BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007510
         (601 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1129

 Score =  987 bits (2551), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/593 (76%), Positives = 522/593 (88%)

Query: 1    MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
            +QD   N+ +FPYPNG H+      +EQ+H YNRL+R GR++EC+DLLEDMER+GLLDM 
Sbjct: 415  IQDEHTNLPEFPYPNGVHSTNKDHKAEQVHGYNRLLRDGRLAECVDLLEDMERRGLLDMS 474

Query: 61   KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
            K+YHA+FF +CK QKA+KEAFRF KLVPNP+LSTFNMLMSVC+SS+DS+GAF+VLRL Q 
Sbjct: 475  KIYHAKFFKICKIQKAVKEAFRFCKLVPNPSLSTFNMLMSVCSSSQDSDGAFEVLRLAQG 534

Query: 121  AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
            AGLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYG+LIDGCAKAGQ+AK
Sbjct: 535  AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAK 594

Query: 181  AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
            AFGAYGI+RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GAL
Sbjct: 595  AFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGAL 654

Query: 241  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
            MKACA AGQVDRA+EVY M+HKYNIKGTPEVYTIA+N CSQTGDWEFA SVYDDMT+KGV
Sbjct: 655  MKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTIAVNFCSQTGDWEFARSVYDDMTRKGV 714

Query: 301  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
             PDE+FLSAL+D AGHAG V+ AFE LQEA+ QG  +GI+ YSSLMGACSNAKNWQKALE
Sbjct: 715  APDEMFLSALVDVAGHAGLVDIAFETLQEARTQGTQLGIVPYSSLMGACSNAKNWQKALE 774

Query: 361  LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
            LYE +K+IKLKPTVSTMNAL+TALCDGDQL K +E LS+MKS GLCPN +TYSILLVA E
Sbjct: 775  LYEDIKAIKLKPTVSTMNALMTALCDGDQLQKALETLSEMKSFGLCPNIVTYSILLVASE 834

Query: 421  RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
            RKDD++ G MLLSQAKED + P  +M+KCIIGMC RRY+KA +L E +LSF+SGRPQI+N
Sbjct: 835  RKDDLDAGDMLLSQAKEDCITPTFLMYKCIIGMCLRRYKKACSLGESILSFDSGRPQIKN 894

Query: 481  KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 540
            +WTS AL VYRE I AG  PT+EVVS+VLGCLQLP +A ++ RLVENLGV+AD  K SNL
Sbjct: 895  EWTSRALTVYRETIAAGEKPTMEVVSQVLGCLQLPCDASLKGRLVENLGVTADPSKFSNL 954

Query: 541  CSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
            C+L+DGFGEYDPRAFSLLEEAAS G VPC SFKE P+V+DA+ L+ H A+V L
Sbjct: 955  CALVDGFGEYDPRAFSLLEEAASLGTVPCASFKESPIVMDAKLLQSHIAEVYL 1007


>gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Vitis vinifera]
          Length = 1115

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/588 (76%), Positives = 517/588 (87%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
           +N+ QFP  NG      +  SE+  +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 406 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 465

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 466 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 525

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 526 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 585

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE  P+DPDHIT+GAL+KAC 
Sbjct: 586 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 645

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           NAGQVDRAREVYKMI +YNIKGTPEVYTIA++  SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 646 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 705

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY  +
Sbjct: 706 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 765

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK  GLCPNTITYSILLVA E+KDD+
Sbjct: 766 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 825

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
           +VGLM+LSQA++D V PNLVM +C++GMC RR+EKA  L E VLSFNSGRPQI+NKWTS 
Sbjct: 826 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 885

Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
           ALMVYRE + AG IPT+E++S+VLGCLQ P +  +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 886 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 945

Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
           GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I  A+V L
Sbjct: 946 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYL 993


>gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera]
          Length = 1550

 Score =  962 bits (2487), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/588 (76%), Positives = 517/588 (87%)

Query: 6    KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
            +N+ QFP  NG      +  SE+  +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 841  RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 900

Query: 66   RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 901  KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 960

Query: 126  DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
            DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 961  DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 1020

Query: 186  GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
            GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE  P+DPDHIT+GAL+KAC 
Sbjct: 1021 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 1080

Query: 246  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            NAGQVDRAREVYKMI +YNIKGTPEVYTIA++  SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 1081 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 1140

Query: 306  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
            FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY  +
Sbjct: 1141 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 1200

Query: 366  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
            KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK  GLCPNTITYSILLVA E+KDD+
Sbjct: 1201 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 1260

Query: 426  EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
            +VGLM+LSQA++D V PNLVM +C++GMC RR+EKA  L E VLSFNSGRPQI+NKWTS 
Sbjct: 1261 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 1320

Query: 486  ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
            ALMVYRE + AG IPT+E++S+VLGCLQ P +  +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 1321 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 1380

Query: 546  GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
            GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I  A+V L
Sbjct: 1381 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYL 1428


>gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa]
 gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/541 (78%), Positives = 484/541 (89%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110
           MER+GLLDM+KVYH +FF +C+SQKA+KEAFRF KLV NPTLSTFNMLMSVCA+S++S G
Sbjct: 1   MERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTFNMLMSVCATSQNSAG 60

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           AF+VL+L +  GLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYGALID
Sbjct: 61  AFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALID 120

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           GCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM  E  P+
Sbjct: 121 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPI 180

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
           DPDHIT+GAL+KAC NAGQVDRA+EVY M+HKYNIKGTPEVYTIAIN CSQ GDWEFAC 
Sbjct: 181 DPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACK 240

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V+DDMT+KGV+PDE+FLSALID AGHAGK++AAFEI+QEAK +G  +GII YSSLMGAC 
Sbjct: 241 VFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACC 300

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
           NAKNWQK LELYE +KS+K+KPTV+TMNALITALCDGDQLPK +EVLS+MK+ GL PNTI
Sbjct: 301 NAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAWGLRPNTI 360

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
           TYSIL VA ERKDD+E GLMLLSQAK+D V P L+M KCII MC R++E A TL E VLS
Sbjct: 361 TYSILSVASERKDDLEAGLMLLSQAKKDCVAPTLIMSKCIISMCLRKFESACTLGEAVLS 420

Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 530
           FNSGR QIENKWTS+ALMVYR  + AG  PT+E+VS+VLGCLQ+P +A ++ RLVENLGV
Sbjct: 421 FNSGRAQIENKWTSVALMVYRGTMAAGEKPTIELVSQVLGCLQIPCDATLKNRLVENLGV 480

Query: 531 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
           +A + + SNLCSL+DGFGEYDPRAFSLLEEAA+ GIVPCVSFKE P+ +DA++L+IH A+
Sbjct: 481 TAVSSRYSNLCSLVDGFGEYDPRAFSLLEEAAALGIVPCVSFKESPITMDAKQLQIHIAE 540

Query: 591 V 591
           V
Sbjct: 541 V 541


>gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Glycine max]
          Length = 1092

 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/554 (73%), Positives = 487/554 (87%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
           R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 408 RLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 467

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
           SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFEVFH+MVN+G+E
Sbjct: 468 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 527

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PNVHTYGALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALI AC QSGA+DRAFDV
Sbjct: 528 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGALDRAFDV 587

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           LAEM AE  P+DPDH+TIGAL+KAC  AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 588 LAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEVYTIAINSC 647

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
           SQTGDWEFA +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA+  GI +GI
Sbjct: 648 SQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGILIGI 707

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           +SYSSLMGACSNA+NWQKALELYE++KS+KL  TVST+NAL+TALCDGDQ  K +EVL +
Sbjct: 708 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 767

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           MK LGL PN+IT+SIL+VA E+KDD+E   MLLS AK+DGV+PNL+M +CIIGMC RR+E
Sbjct: 768 MKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSLAKKDGVVPNLIMCRCIIGMCQRRFE 827

Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
           KA  + E VLSF+SGRPQ++NKWTSLALMVYRE I AG  PT E++S++LGCLQLPY+  
Sbjct: 828 KACFVGEPVLSFDSGRPQVDNKWTSLALMVYRETIEAGEKPTSEILSQILGCLQLPYDTS 887

Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
           ++ RLVENLGVS +  + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VS K  PVV+
Sbjct: 888 VKNRLVENLGVSMETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSLKVSPVVI 947

Query: 580 DARKLEIHTAKVSL 593
           DA++L   TA+V L
Sbjct: 948 DAKELNASTAEVYL 961


>gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Cucumis sativus]
          Length = 1108

 Score =  885 bits (2287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/589 (70%), Positives = 507/589 (86%)

Query: 5   GKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
           GK +   P+PNGKH +Y +   +Q  SYN+ ++ GR+ +CI +L+DME++G+LDM+K+YH
Sbjct: 398 GKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYH 457

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            +FFN+CKS+KA++EAF++  L+ NPTLSTFNMLMSVCASS+DSE AFQV+RLVQEAG+K
Sbjct: 458 GKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMK 517

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
           ADCKLYTTLI+TC KSGKVDAMFEVFH MVNAG+EPNVHTYGALIDGCA+A QVAKAFG 
Sbjct: 518 ADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGV 577

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
           YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE+HP++PDHITIGALMKAC
Sbjct: 578 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKAC 637

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
           ANAGQVDRAREVYKMIH Y IKGTPEVYTIA+NCCSQ+ DW+FA ++Y DMT+KGV PDE
Sbjct: 638 ANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDE 697

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           +FLSALID AGHAGK++AAFE+L EAK  GI VGI+SYSSLMGACSNAKNWQKAL LYE 
Sbjct: 698 IFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYED 757

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           +KS+KL+ TVST+NALITAL DG+QL   M++L++MK LGL PN ITYSIL  A +R +D
Sbjct: 758 LKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASDRNND 817

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 484
           +E+ LMLLSQAKEDG++P L M++CIIGMC RR     +L+  ++S +S  PQ+++KWT+
Sbjct: 818 LEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIADPSSLDRPLMSLDSTLPQVDSKWTA 877

Query: 485 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 544
            AL VYRE I AG +P+++V+S+VLGCLQ+P++  ++ RL+EN+GVSAD+ + S+LCSLI
Sbjct: 878 QALKVYREIIEAGIVPSIDVLSQVLGCLQIPHDPALKSRLIENIGVSADSSRSSSLCSLI 937

Query: 545 DGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
           DGFGEYDPRAFSL EEAAS G+ P VS K  P+VVDA++L+IHTA+V L
Sbjct: 938 DGFGEYDPRAFSLFEEAASLGVAPFVSLKGNPIVVDAKELQIHTAEVYL 986


>gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g34830, chloroplastic; Flags: Precursor
 gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1089

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/588 (69%), Positives = 492/588 (83%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
           ++M QFP  N +  N      E   +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            FF  CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA  VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC 
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           F SALID AGHA  ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD 
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
           EV   LLSQAK DGV PNL+M +CI  +C RR+EKA    E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860

Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
           ALMVYRE I  GT+PT EVVS+VLGCLQLP++A +R+RL+  LG++  + K+ N+  L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920

Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
           GFGEYDPRAFSLLEEA S G++P VSF +IP+  D  +L  + A+V L
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYL 968


>gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1089

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/588 (69%), Positives = 492/588 (83%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
           ++M QFP  N +  N      E   +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            FF  CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA  VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC 
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           F SALID AGHA  ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD 
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
           EV   LLSQAK DGV PNL+M +CI  +C RR+EKA    E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860

Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
           ALMVYRE I  GT+PT EVVS+VLGCLQLP++A +R+RL+  LG++  + K+ N+  L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920

Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
           GFGEYDPRAFSLLEEA S G++P VSF +IP+  D  +L  + A+V L
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYL 968


>gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1089

 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/588 (69%), Positives = 492/588 (83%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
           ++M QFP  N +  N      E   +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            FF  CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA  VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC 
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           F SALID AGHA  ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD 
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
           EV   LLSQAK DGV PNL+M +CI  +C RR+EKA    E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860

Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
           ALMVYRE I  GT+PT EVVS+VLGCLQLP++A +R+RL+  LG++  + K+ N+  L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920

Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
           GFGEYDPRAFSLLEEA S G++P VSF +IP+  D  +L  + A+V L
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYL 968


>gi|356544435|ref|XP_003540656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Glycine max]
          Length = 1071

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/552 (73%), Positives = 482/552 (87%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
           R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 387 RLHECVELLKDMETKGLLDMSKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 446

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
           SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFEVFH+MVN+G+E
Sbjct: 447 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 506

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PNVHTYGALI GCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALI AC QSGAVDRAFDV
Sbjct: 507 PNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDV 566

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           LAEM AE  P+DPDH+TIGAL+KAC  AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 567 LAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCPEVYTIAINSC 626

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
           SQTGDWE+A +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA   GI +GI
Sbjct: 627 SQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEAHKGGIQIGI 686

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           +SYSSLMGACSNA+NWQKALELYE++KS+KL  TVST+NAL+TALCDGDQ  K +EVL +
Sbjct: 687 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 746

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           MK LGL PN+IT+SIL+VA E+KDD+E   M+LS AK+DGV PNL+M +CIIGMC RRYE
Sbjct: 747 MKGLGLSPNSITFSILIVASEKKDDMEAAQMILSLAKKDGVAPNLIMCRCIIGMCQRRYE 806

Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
           KA  + E VLSF+SGRP ++NKWTSLALMVYRE I AG  PT E++ ++LGCLQLPY+  
Sbjct: 807 KACFVGEPVLSFDSGRPLVDNKWTSLALMVYRETIEAGGKPTSEILPQILGCLQLPYDTS 866

Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
           ++ RLVENLGV A+  + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VSFK  P+V+
Sbjct: 867 VKNRLVENLGVRAETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSFKVSPIVI 926

Query: 580 DARKLEIHTAKV 591
           DA++L   TA+V
Sbjct: 927 DAKELHASTAEV 938


>gi|357473771|ref|XP_003607170.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508225|gb|AES89367.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1173

 Score =  875 bits (2260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/554 (72%), Positives = 484/554 (87%)

Query: 40   RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
            R+ EC++LL+DME KGLLDM KVYHA+FFN+CK QKA+ EAF + +L+PNPTLSTFNMLM
Sbjct: 498  RLCECVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVNEAFDYVRLIPNPTLSTFNMLM 557

Query: 100  SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
            SVCASS+DSEGAFQV++L+++A L  DCKLYTTLI+TC K GKVD MFEVFH+MVN+G+E
Sbjct: 558  SVCASSQDSEGAFQVIQLLKDARLDPDCKLYTTLISTCGKCGKVDLMFEVFHKMVNSGVE 617

Query: 160  PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
            PNVHTYGALIDGCA+AGQVAKAFGAYGIMRSKNVK DRVVFNALI AC QSGA+ RAFDV
Sbjct: 618  PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDV 677

Query: 220  LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
            +AEM AE+ P+ PDH+T G LMKACA AGQV+RAREVYKMI +YNIKG+ EVYTIAIN C
Sbjct: 678  IAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSC 737

Query: 280  SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            SQTGDWEFA SVYDDMT+KGV+PDE+F+SALID AGHA K+EAAF+ILQ+A+ +G+ +GI
Sbjct: 738  SQTGDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGVQIGI 797

Query: 340  ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            ++YSSLMGACS AKNWQ+ALELYE++KS+KL  TVST+NAL+TALCDGDQ  K +EVLS+
Sbjct: 798  MTYSSLMGACSKAKNWQRALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSE 857

Query: 400  MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
            MK LGLCPN+IT+SIL+VA E+KDD+E   MLLSQAK+DG  P L+M +CIIGMC RR+E
Sbjct: 858  MKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGAAPTLIMCRCIIGMCLRRFE 917

Query: 460  KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
            KA  + E VLSF+SGRPQ+ N+WTSLALMVYRE I AG  PT +++S+VLGCL+ PY+  
Sbjct: 918  KACLVGETVLSFDSGRPQVNNEWTSLALMVYRETIGAGEKPTSQILSQVLGCLKFPYDTY 977

Query: 520  IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 579
            +R RLVENLGV+A++ K SNLCSLIDGFGEYDPRAFS+LEEAAS+G+VP VS K  P+V+
Sbjct: 978  VRNRLVENLGVTAESSKTSNLCSLIDGFGEYDPRAFSILEEAASYGVVPSVSLKMNPIVI 1037

Query: 580  DARKLEIHTAKVSL 593
            DA++L+  TA+V L
Sbjct: 1038 DAKELDAFTAEVYL 1051


>gi|297798436|ref|XP_002867102.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312938|gb|EFH43361.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1094

 Score =  873 bits (2256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/588 (68%), Positives = 490/588 (83%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
           ++M QF   N +  N      E   +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 386 ESMPQFHARNFELHNSNGRSPESNDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 445

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            FF  CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA  VLRLVQE+G+ A
Sbjct: 446 SFFKTCKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 505

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 506 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 565

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHITIGALMKAC 
Sbjct: 566 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITIGALMKACC 625

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 626 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 685

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           F SALID AGHA  ++ AF ILQ+AK+QGI +G +SYSSLMGAC NAK+W+KALELYE +
Sbjct: 686 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTVSYSSLMGACCNAKDWKKALELYEKI 745

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           K IKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD 
Sbjct: 746 KLIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 805

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
           EV   LLSQAKEDG+ PN +M +CI  +C RR+EKA    E V+SF SGRPQIENKWTS+
Sbjct: 806 EVSFKLLSQAKEDGISPNFIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 865

Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
           ALMVYRE I  GT+PT EVVS+VLGCLQLP++A +R+RL+ NL ++  + K+ N+  L+D
Sbjct: 866 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISNLSINISSQKQHNIFPLVD 925

Query: 546 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
           GFGEYDPRAFSLLEEA S G++P VSF +IP+  D  +L  + A+V L
Sbjct: 926 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYL 973


>gi|115481316|ref|NP_001064251.1| Os10g0181200 [Oryza sativa Japonica Group]
 gi|113638860|dbj|BAF26165.1| Os10g0181200, partial [Oryza sativa Japonica Group]
          Length = 1021

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/599 (61%), Positives = 461/599 (76%), Gaps = 12/599 (2%)

Query: 7   NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 302 NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 361

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 362 KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 421

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           AGLK DCKLYTTLI+TCAK GKVDAMFEVFHEMV+AGIEPNV+TY ALIDGCAKAGQVAK
Sbjct: 422 AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 481

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 234
           AFGAYGIM SK VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 482 AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 541

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 542 VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 601

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 602 MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 661

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 662 WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 721

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
           L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 722 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 781

Query: 475 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 534
           +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 782 KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 841

Query: 535 LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
               N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+VS+
Sbjct: 842 PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSV 900


>gi|110288710|gb|AAP52447.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215694798|dbj|BAG89989.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 735

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/599 (61%), Positives = 461/599 (76%), Gaps = 12/599 (2%)

Query: 7   NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 16  NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 75

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 76  KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 135

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           AGLK DCKLYTTLI+TCAK GKVDAMFEVFHEMV+AGIEPNV+TY ALIDGCAKAGQVAK
Sbjct: 136 AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 195

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 234
           AFGAYGIM SK VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 196 AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 255

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 256 VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 315

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 316 MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 375

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 376 WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 435

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
           L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 436 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 495

Query: 475 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 534
           +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 496 KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 555

Query: 535 LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
               N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+VS+
Sbjct: 556 PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSV 614


>gi|215694797|dbj|BAG89988.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 930

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/599 (61%), Positives = 461/599 (76%), Gaps = 12/599 (2%)

Query: 7   NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 211 NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 270

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 271 KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 330

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           AGLK DCKLYTTLI+TCAK GKVDAMFEVFHEMV+AGIEPNV+TY ALIDGCAKAGQVAK
Sbjct: 331 AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 390

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 234
           AFGAYGIM SK VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 391 AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 450

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 451 VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 510

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 511 MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 570

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 571 WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 630

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
           L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 631 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 690

Query: 475 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 534
           +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 691 KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 750

Query: 535 LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
               N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+VS+
Sbjct: 751 PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSV 809


>gi|18642701|gb|AAL76193.1|AC092173_5 Putative crp1 protein [Oryza sativa Japonica Group]
          Length = 1089

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/599 (61%), Positives = 461/599 (76%), Gaps = 12/599 (2%)

Query: 7   NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 370 NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 429

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 430 KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 489

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           AGLK DCKLYTTLI+TCAK GKVDAMFEVFHEMV+AGIEPNV+TY ALIDGCAKAGQVAK
Sbjct: 490 AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 549

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 234
           AFGAYGIM SK VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 550 AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 609

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 610 VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 669

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 670 MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 729

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 730 WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 789

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
           L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 790 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 849

Query: 475 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 534
           +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 850 KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 909

Query: 535 LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
               N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+VS+
Sbjct: 910 PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSV 968


>gi|222612526|gb|EEE50658.1| hypothetical protein OsJ_30888 [Oryza sativa Japonica Group]
          Length = 869

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/599 (61%), Positives = 461/599 (76%), Gaps = 12/599 (2%)

Query: 7   NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 150 NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 209

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 210 KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 269

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           AGLK DCKLYTTLI+TCAK GKVDAMFEVFHEMV+AGIEPNV+TY ALIDGCAKAGQVAK
Sbjct: 270 AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 329

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 234
           AFGAYGIM SK VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 330 AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 389

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 390 VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 449

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 450 MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 509

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 510 WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 569

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
           L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 570 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 629

Query: 475 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 534
           +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 630 KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 689

Query: 535 LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
               N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+VS+
Sbjct: 690 PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSV 748


>gi|125531299|gb|EAY77864.1| hypothetical protein OsI_32907 [Oryza sativa Indica Group]
          Length = 1089

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/599 (61%), Positives = 461/599 (76%), Gaps = 12/599 (2%)

Query: 7   NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 370 NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 429

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 430 KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 489

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           AGLK DCKLYTTLI+TCAK GKVDAMFEVFHEMV+AGIEPNV+TY ALIDGCAKAGQVAK
Sbjct: 490 AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 549

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 234
           AFGAYGIM SK VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 550 AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 609

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 610 VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 669

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 670 MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 729

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 730 WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 789

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
           L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 790 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 849

Query: 475 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 534
           +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 850 KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 909

Query: 535 LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
               N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+VS+
Sbjct: 910 PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSV 968


>gi|110288709|gb|ABG65945.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|110288711|gb|ABG65946.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 614

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/597 (61%), Positives = 459/597 (76%), Gaps = 12/597 (2%)

Query: 7   NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 16  NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 75

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 76  KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 135

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           AGLK DCKLYTTLI+TCAK GKVDAMFEVFHEMV+AGIEPNV+TY ALIDGCAKAGQVAK
Sbjct: 136 AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 195

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 234
           AFGAYGIM SK VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 196 AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 255

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 256 VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 315

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 316 MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 375

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 376 WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 435

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
           L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 436 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 495

Query: 475 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 534
           +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 496 KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 555

Query: 535 LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKV 591
               N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+V
Sbjct: 556 PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEV 612


>gi|357145938|ref|XP_003573820.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1084

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/580 (59%), Positives = 449/580 (77%), Gaps = 6/580 (1%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           N   D S+ +  YN  +  GR+ +C+DLLE+ME+KGLLDM K++HA F   CK Q+A+ E
Sbjct: 385 NGTVDTSDYIRRYNSSLMDGRLKDCVDLLENMEQKGLLDMKKIHHASFLIACKKQRAVME 444

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           A RF +L+ NP +STFNML+SVCA S+D +GA QV+ L++EAGLK DCKLYTTLI+TCAK
Sbjct: 445 AVRFCRLIANPKMSTFNMLLSVCAHSQDFDGALQVMMLLKEAGLKPDCKLYTTLISTCAK 504

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            GKVDAMFEVFHEMV+AGIEPNV+TYGALIDGCAKAGQVAKAFGAYGIM SK VKPDRVV
Sbjct: 505 CGKVDAMFEVFHEMVSAGIEPNVNTYGALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVV 564

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDHITIGALMKACANAGQVDRA 253
           FNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH+T+GALMK C  AGQ DRA
Sbjct: 565 FNALISACGESGAVARAFDVLSEMTAEPSESKGWKPILPDHVTVGALMKTCIQAGQADRA 624

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           REVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+DM K GVIPDE+FLSAL+D 
Sbjct: 625 REVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVIPDEMFLSALVDV 684

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
           AGHA + +AAFEI+++ + +G  VGI++YSS MGAC NAK+W+KAL+L+E +K  +L PT
Sbjct: 685 AGHARRADAAFEIIKDVRAKGFHVGIMAYSSFMGACCNAKDWKKALQLFEEIKISRLTPT 744

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           V  MNALIT+LCDGDQ+ K++EVL+++K  G+ PN ITYS+L VACER  + E+G+ L  
Sbjct: 745 VPMMNALITSLCDGDQVQKSIEVLNELKEFGVRPNEITYSVLCVACERNGEAELGIDLFE 804

Query: 434 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREA 493
           Q K DG+  N  +  C+ G+C +++    +L   ++ FN G+PQI+NKWT+ A+MV+R+A
Sbjct: 805 QLKVDGIGLNPTIVGCVTGLCLQKFSNDLSLGNIIVRFNLGKPQIDNKWTTSAIMVFRQA 864

Query: 494 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 553
           I AG +P+ +V+S+VLGCL+ P+++ ++   ++N+G+S D     N  SL++GFGEYD R
Sbjct: 865 ITAGLLPSSDVLSQVLGCLRFPHDSSLKSTFIDNMGISCDMPHHPNTYSLLEGFGEYDVR 924

Query: 554 AFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
           AFS+LEEAA  G V   S K   +V+DARK +++TA+VSL
Sbjct: 925 AFSILEEAALLGAVASASTKHSQIVIDARKSKMYTAEVSL 964


>gi|147781878|emb|CAN69936.1| hypothetical protein VITISV_038780 [Vitis vinifera]
          Length = 1206

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/682 (54%), Positives = 458/682 (67%), Gaps = 97/682 (14%)

Query: 6    KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
            +N+ QFP  NG      +  SE+  +YNR + +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 406  RNLSQFPLSNGMTVKEKYHDSEKFSAYNRXLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 465

Query: 66   RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 466  KFFKJCRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 525

Query: 126  DCKLYTTLITTCAKSGKVDAMFEV--FHEMVNA---------------GIEPNVHTYGAL 168
            DCKLYTTLI+TCAKSGKVDAMFE+   H +  A               GI     T   L
Sbjct: 526  DCKLYTTLISTCAKSGKVDAMFELPSIHPLNTAACFICIKIVNIRSXMGISDKDLTLTPL 585

Query: 169  --IDGCAKAGQVAKAFG-AYGIMRSKNVKPDRVVFNAL----ITACG-QSGAVDRAF--D 218
              +      G+V ++ G  + +    ++  D++ F  +    ++  G Q   +  AF   
Sbjct: 586  AYLVDVGMLGKVEESRGFNFRLYWXFSIFLDKICFXLIDFVTLSFFGTQCMYLSFAFIYI 645

Query: 219  VLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY----- 272
            V  EM NAE   V+P+  T GAL+  C  AGQV +A   Y ++    ++    V+     
Sbjct: 646  VFHEMVNAE---VEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALIT 702

Query: 273  -----------------------------------------------TIAINCCSQTGDW 285
                                                           TIA+N  SQ GDW
Sbjct: 703  ACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGSEVYTIAVNSHSQIGDW 762

Query: 286  EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
            EFA SVY DMT+KGV+PDE+FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSL
Sbjct: 763  EFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSL 822

Query: 346  MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC--------------DGDQLP 391
            MGACSNAKNWQKALELY  +KS+KL PTVSTMNALITAL               +G+QL 
Sbjct: 823  MGACSNAKNWQKALELYVDIKSMKLNPTVSTMNALITALSKIGLRNHMNSSTTGEGEQLE 882

Query: 392  KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            K MEVLSDMK  GLCPNTITYSILLVA E+KDD++VGLM+LSQA++D V PNLVM +C++
Sbjct: 883  KAMEVLSDMKRAGLCPNTITYSILLVASEKKDDIDVGLMILSQARKDSVAPNLVMCRCLV 942

Query: 452  GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 511
            GMC RR+EKA  L E VLSFNSGRPQI+NKWTS ALMVYRE + AG IPT+E++S+VLGC
Sbjct: 943  GMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSSALMVYRETVSAGVIPTMELLSQVLGC 1002

Query: 512  LQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571
            LQ P +  +R RL+ENLGVSADA +RSNLCSLIDGFGEYD RAFSLLEEAAS G+V CVS
Sbjct: 1003 LQFPRDVSLRNRLIENLGVSADASRRSNLCSLIDGFGEYDSRAFSLLEEAASLGVVSCVS 1062

Query: 572  FKEIPVVVDARKLEIHTAKVSL 593
            FK+ PV+VD R L+I  A+V L
Sbjct: 1063 FKKSPVIVDTRXLQIRIAEVYL 1084


>gi|5123700|emb|CAB45444.1| putative protein [Arabidopsis thaliana]
 gi|7270434|emb|CAB80200.1| putative protein [Arabidopsis thaliana]
          Length = 749

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 253/348 (72%), Positives = 298/348 (85%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
           ++M QFP  N +  N      E   +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            FF  CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA  VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC 
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           F SALID AGHA  ++ AF ILQ+AK+QGI +G ISYSSLMGAC N K
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNEK 728



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 143/305 (46%), Gaps = 8/305 (2%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           L Q   L  D   + +    C K   V   F     ++N    P + T+  L+  CA + 
Sbjct: 426 LDQRDLLDMDKIYHASFFKACKKQRAVKEAFRFTKLILN----PTMSTFNMLMSVCASSQ 481

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
            +  A G   +++   +  D  ++  LI++C +SG VD  F+V  +M+     V+ +  T
Sbjct: 482 DIEGARGVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMFEVFHQMSNS--GVEANLHT 539

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
            GAL+  CA AGQV +A   Y ++   N+K    V+   I+ C Q+G  + A  V  +M 
Sbjct: 540 FGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 599

Query: 297 KKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
            +   + PD + + AL+    +AG+VE A E+ Q     GI      Y+  + +CS + +
Sbjct: 600 AETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGD 659

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           W  A  +Y+ MK   + P     +ALI        L +   +L D KS G+   TI+YS 
Sbjct: 660 WDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSS 719

Query: 415 LLVAC 419
           L+ AC
Sbjct: 720 LMGAC 724



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 136/310 (43%), Gaps = 15/310 (4%)

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           + +    C K   V +AF    ++    + P    FN L++ C  S  ++ A  VL  + 
Sbjct: 439 HASFFKACKKQRAVKEAFRFTKLI----LNPTMSTFNMLMSVCASSQDIEGARGVLRLVQ 494

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
                 D    T   L+ +CA +G+VD   EV+  +    ++     +   I+ C++ G 
Sbjct: 495 ESGMTADCKLYT--TLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQ 552

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE--AKNQGISVGIISY 342
              A   Y  +  K V PD V  +ALI   G +G V+ AF++L E  A+   I    IS 
Sbjct: 553 VAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISI 612

Query: 343 SSLMGACSNAKNWQKALELYE--HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
            +LM AC NA   ++A E+Y+  H   I+  P V T+ A+ +    GD       +  DM
Sbjct: 613 GALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTI-AVNSCSKSGD-WDFACSIYKDM 670

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 460
           K   + P+ + +S L+        ++    +L  AK  G+    + +  ++G C     +
Sbjct: 671 KEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCN---E 727

Query: 461 ARTLNEHVLS 470
            +   EHV S
Sbjct: 728 KQNFGEHVAS 737



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 6/229 (2%)

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           +D D I   +  KAC     V  A    K+I    +  T   + + ++ C+ + D E A 
Sbjct: 432 LDMDKIYHASFFKACKKQRAVKEAFRFTKLI----LNPTMSTFNMLMSVCASSQDIEGAR 487

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            V   + + G+  D    + LI     +GKV+A FE+  +  N G+   + ++ +L+  C
Sbjct: 488 GVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGC 547

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK--SLGLCP 407
           + A    KA   Y  ++S  +KP     NALI+A      + +  +VL++MK  +  + P
Sbjct: 548 ARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 607

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           + I+   L+ AC     VE    +     + G+     ++   +  CS+
Sbjct: 608 DHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSK 656


>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 978

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 267/569 (46%), Positives = 385/569 (67%), Gaps = 9/569 (1%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-P 90
           Y  +++ GRI +C+ LL +M++ G L   KV H++F+  CK++ ++++AF F KL+    
Sbjct: 234 YASMLKAGRIKDCLKLLGEMDKAGKLARMKVNHSKFYEACKARGSVEDAFAFAKLMREFS 293

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           TL  + ML+SVC  +KD +GA +VL L++  GLKADC  YT+LI+ CAK+GKVD +F++F
Sbjct: 294 TLQHYTMLLSVCCHAKDIDGALRVLALLESRGLKADCMFYTSLISACAKAGKVDLLFQIF 353

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           HEM  AGIE NVHT+GA+IDGCA+AGQ+ KAFGAYGIM SKNVKPDRV+FN LI AC ++
Sbjct: 354 HEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKNVKPDRVIFNTLINACTRA 413

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           GAV RAFDVL +M AE  P+ PDH+T GAL+ ACA AG+VDRA EVY+ + + N+KG+P 
Sbjct: 414 GAVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQNMRESNVKGSPA 473

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            YT  ++ CSQ G+ ++A  VYDD+ K GV PDEVF SAL+D AGHA  +E AF I+   
Sbjct: 474 CYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSALVDAAGHAQDIEKAFSIIANM 533

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K +G+  G + YSSLMG CSN  NW+KALE+Y+ ++S  L+PTVST NAL+TALC+ +Q 
Sbjct: 534 KKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTALCEANQF 593

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            + + +L D+K+ G+ PN I+YSILL ACE++   ++ L L   A  +G+ PN+ +   I
Sbjct: 594 TRALSILQDVKNSGIMPNQISYSILLRACEKEKMADMALDLYMTALSEGIKPNVGICDSI 653

Query: 451 IGMCSRRYEKARTLNEHVLSF-----NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV 505
            G+C ++ +      + + S      +S      ++W++ AL VYR+ I AGT P +E +
Sbjct: 654 TGLCLQQIQSYAAAPQKLWSMLPVPADSNNLSSTDQWSTWALSVYRQTIEAGTPPKIETL 713

Query: 506 SKVLGCLQLPYNADIRERLVENLGVSA--DALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 563
           S++LGCL+    +       ++  + A     + S   +  DGFG YDPRA +L EEA++
Sbjct: 714 SQLLGCLRKLETSTKALTTFDDRTIMAFLGQPQVSKSSTPYDGFGIYDPRALALFEEASA 773

Query: 564 FGIVPCVSFKEI-PVVVDARKLEIHTAKV 591
             IVP +S   + P+V++A  + +  A+V
Sbjct: 774 LKIVPTISSSSVQPIVINAEMMPVFAAEV 802


>gi|302768873|ref|XP_002967856.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
 gi|300164594|gb|EFJ31203.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
          Length = 731

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 264/578 (45%), Positives = 383/578 (66%), Gaps = 34/578 (5%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
           RI E +++LE+ME+KG LDM+KVYHARF+  CK Q A++EAFR+  L+ +PTLST+NML+
Sbjct: 12  RIRESLEVLEEMEKKGTLDMNKVYHARFYQECKRQLAVEEAFRYTGLIKSPTLSTYNMLL 71

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----------- 148
           SVC ++ D  GAF     ++ AG K DC +YTTLI+TC+K+ K D +F+           
Sbjct: 72  SVCCNAGDMNGAFGAFAALKRAGFKPDCMIYTTLISTCSKALKTDLVFQARNPGPILHWT 131

Query: 149 ------VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                 V+ EM + G+E N+ TYGA+IDGCA+ G++AKAFG Y IM SK +KPDRV+FN+
Sbjct: 132 NSVLAQVYREMESVGVEANLLTYGAIIDGCARTGELAKAFGIYRIMLSKKIKPDRVIFNS 191

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI ACG+SGAV RAF+V  E+ +E +P++P+H+T+ +L+ AC+ AG  D A EVY M+ K
Sbjct: 192 LINACGRSGAVKRAFEVFTELKSE-NPINPNHVTMCSLIDACSKAGDGDSAYEVYTMMRK 250

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I G PE YT A++ CS +G+ E A S+YDDM K GV PDE+F SALID AGHA K++ 
Sbjct: 251 RGIGGCPEPYTAAVHACSSSGNLERAFSIYDDMKKDGVKPDEIFFSALIDVAGHASKIDC 310

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           AF++LQE +   +  G + +SSLMG CSN  NW+KA+ LYE+++++ ++P+VST+NAL+T
Sbjct: 311 AFDVLQEVEKYSLVPGPVIFSSLMGVCSNTGNWEKAIFLYENIQAVGIRPSVSTLNALMT 370

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           ALC G Q    ++ L ++K  G+ PN +TYSILL ACE++++  + L L + A  DG++P
Sbjct: 371 ALCRGKQFQNALQSLEELKEAGVSPNQLTYSILLEACEKENEAGIALNLYTHAIADGIVP 430

Query: 443 NLVMFKCIIGMCSRRYEK-------ARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 495
           NL M   IIG+C             A ++N   +  ++ +P    +W S AL  +R+ + 
Sbjct: 431 NLAMCDNIIGICLEGIRSSIGPPKLASSVNPLWMVDDNQKPH--GQWLSWALACFRQTLS 488

Query: 496 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAF 555
            G  PT+ V+S++L CL++P ++   ER    L     +  +     L++GFG YDPRA 
Sbjct: 489 GGAQPTLPVLSRLLACLRIPESS---ERADTGLVFQTSSPNK----HLVEGFGVYDPRAS 541

Query: 556 SLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
           +L EEA+S G+VP       P+V +A  L I+TA+V L
Sbjct: 542 ALYEEASSIGVVPAFKCDGEPIVFEADGLPIYTAEVCL 579


>gi|168024390|ref|XP_001764719.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684013|gb|EDQ70418.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1020

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 265/570 (46%), Positives = 385/570 (67%), Gaps = 10/570 (1%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NP 90
           Y  L++ GRI +C+ LL ++ +   L + KV H++F+ VCK++  +++AF F K++    
Sbjct: 245 YASLLKAGRIKDCLVLLGEINKLDKLSLMKVNHSKFYEVCKTKGTVEDAFTFAKIMRVYS 304

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           TL  + ML+SVC  +KD +GA +VL LV+  G KADC  YTTLI+ C+K+GKVD +F++ 
Sbjct: 305 TLQHYTMLLSVCCHAKDIDGALRVLALVESRGFKADCVFYTTLISACSKAGKVDLLFQIL 364

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           HEM  AG+E NVHT+GA+IDGCA+AGQ+ KAFGAYGIM SK+VKPDRV+FN LI AC + 
Sbjct: 365 HEMDVAGVEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKDVKPDRVIFNTLINACSRV 424

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           GAV RAFDVLA+M +E  PV PDH+T GAL+ ACA  G+V RA EVY+ + + ++KG   
Sbjct: 425 GAVQRAFDVLADMKSEATPVKPDHVTYGALISACAKGGEVGRALEVYQSMRENDVKGFLA 484

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            YT A++ CSQ GD ++A ++YDD+ K GV PDEVF SAL+D AGH+G V+ AF IL   
Sbjct: 485 CYTAAVHACSQKGDLDYALAIYDDLLKDGVKPDEVFFSALVDAAGHSGDVDKAFSILDIM 544

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           +  G+  G + YSSLMG CSN   W+K LE+YE ++S KL+PTVST NAL+TALC+  Q 
Sbjct: 545 RKSGMKPGAVVYSSLMGVCSNLGEWEKGLEVYEGIRSSKLRPTVSTYNALMTALCEAKQF 604

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            + + VL+D+K  G  PN ++YSILL ACER+   ++ L L + A+ +G+ PNLV+   I
Sbjct: 605 DRALSVLNDLKDAGRTPNQVSYSILLKACEREGKADMALDLYTTARAEGIKPNLVICDSI 664

Query: 451 IGMCSRRYEKARTLNEHVLSFNSGRP------QIENKWTSLALMVYREAIVAGTIPTVEV 504
           IG+C ++ +   ++   ++S++   P        + +W + AL +YR+ I AG +PTVE+
Sbjct: 665 IGLCLQQIQT--SVAAPLVSWSILPPADNSNISSQQQWVTWALTIYRQTIEAGVLPTVEI 722

Query: 505 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASF 564
           +S++LGCL+ P  +     + ++   +     +    +  DGFG YDPRA +L EEAA+ 
Sbjct: 723 LSQLLGCLRKPEASTTPVSIFDDKAAAFLGQSQPATSTSFDGFGIYDPRALALFEEAAAL 782

Query: 565 GIVPCVSFKEI-PVVVDARKLEIHTAKVSL 593
            I P  S+  + P+V++A  + +  A+V L
Sbjct: 783 KIAPMFSYNTLQPIVINAEAMPVFAAEVCL 812


>gi|302799808|ref|XP_002981662.1| hypothetical protein SELMODRAFT_115078 [Selaginella moellendorffii]
 gi|300150494|gb|EFJ17144.1| hypothetical protein SELMODRAFT_115078 [Selaginella moellendorffii]
          Length = 585

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/577 (45%), Positives = 379/577 (65%), Gaps = 36/577 (6%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
           RI E +++LE+ME+KG LDM+KVYHARF+  CK Q A++EAFR+  L+ +PTLST+NML+
Sbjct: 5   RIRESLEVLEEMEKKGTLDMNKVYHARFYQECKRQLAVEEAFRYTGLIKSPTLSTYNMLL 64

Query: 100 SVCASSKDSEGAFQVLRL-VQEAGLKADCKLYTTLITTCAKSGKVDAMFE------VFHE 152
           SVC +++D+          ++ AG K DC +YTTLI+TC+K+ K D +F+      V+ E
Sbjct: 65  SVCCNARDTNAGAFGAFAALKRAGFKPDCMIYTTLISTCSKALKTDLVFQARNPAQVYRE 124

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M + G+E N+ TYGA+IDGCA+ G++AKAFG Y IM SK +KPDRV+FN+LI ACG+SGA
Sbjct: 125 MESVGVEANLLTYGAIIDGCARTGELAKAFGIYRIMLSKKIKPDRVIFNSLINACGRSGA 184

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V RAF+V  E+ +E   ++P+H+T+ +L+ AC+ AG  D A EVY M+ K  I G PE Y
Sbjct: 185 VKRAFEVFTELKSE-SLINPNHVTMCSLIDACSKAGDGDSAYEVYTMMRKRGIGGCPEPY 243

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T A++ CS +G+ E A S+YDDM K GV  DE+F SALID AGHAGK+  AF++LQE + 
Sbjct: 244 TAAVHACSSSGNLERAFSIYDDMKKDGVKADEIFFSALIDVAGHAGKINCAFDVLQEVEK 303

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
             +  G + +SSLMG CSN +NW+KA+ LYE+++++ ++P+VST+NAL+TALC G Q   
Sbjct: 304 YSLVPGPVIFSSLMGVCSNVRNWEKAIFLYENIQAVGIRPSVSTLNALMTALCRGKQFQN 363

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            ++ L ++K  G+ PN +TYSILL ACE++++  + L L + A  DG++PNL M   IIG
Sbjct: 364 ALQSLEELKEAGVSPNQLTYSILLEACEKENEAGIALNLYTHAIADGIVPNLAMCDNIIG 423

Query: 453 M--------------CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 498
           M              C++ +      +   L   S  P++     S AL  +R+ +  G 
Sbjct: 424 MLLADALEICIEPMLCTKVF--VWKASRAPLDLRSLLPRL-----SWALACFRQTLSGGA 476

Query: 499 IPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLL 558
            PT+ V+S++L CL++P ++   ER    L     +  +     L++GFG YDPRA +L 
Sbjct: 477 QPTLPVLSRLLACLRIPESS---ERADTGLVFQTSSPNK----HLVEGFGVYDPRASALY 529

Query: 559 EEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSLSF 595
           EEA+S G+VP       P+V +A  L I+TA+VS  F
Sbjct: 530 EEASSIGVVPAFKCDGEPIVFEADGLPIYTAEVSSHF 566


>gi|110288708|gb|ABG65944.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 377

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/363 (58%), Positives = 277/363 (76%)

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
           P+ PDH+T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA
Sbjct: 13  PILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFA 72

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             +Y+DM K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGA
Sbjct: 73  LKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGA 132

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
           C NAK+W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN
Sbjct: 133 CCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPN 192

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
            ITYS+L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V
Sbjct: 193 MITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIV 252

Query: 469 LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
           ++FN G+PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+
Sbjct: 253 VTFNLGKPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENM 312

Query: 529 GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHT 588
           G+S D     N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+T
Sbjct: 313 GISCDIPHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYT 372

Query: 589 AKV 591
           A+V
Sbjct: 373 AEV 375



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 7/230 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I P+  T GAL+  C +AGQ  +A   Y +++  N+K    V+   + +C  +G +  A 
Sbjct: 14  ILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFAL 73

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            +  +MN     V PD + + AL+    +A + D A E+ K       +     Y+  + 
Sbjct: 74  KIYEDMNK--IGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMG 131

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
            C    DW+ A  +++++    ++P    ++ALI       +V  +FE+L E K  G+  
Sbjct: 132 ACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCP 191

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMK--SIKLKPTVSTMNALITALC 385
            +I+YS L  AC      Q  L+L+E +K  SI L PT+      +T LC
Sbjct: 192 NMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIV---GCLTGLC 238



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/299 (19%), Positives = 128/299 (42%), Gaps = 22/299 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T   LM  C  +  ++ A +V +++QE  +K   ++YT  + +C+ +G +    ++
Sbjct: 16  PDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKI 75

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM---RSKNVKPDRVVFNALITA 206
           + +M   G++P+     AL+D    AG   +A  A+ IM   R+K  +   + +++L+ A
Sbjct: 76  YEDMNKIGVQPDEMFLSALVD---VAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGA 132

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           C  +    +A  +  E+ +    + P    + AL+ A  +  QV ++ EV   + +  + 
Sbjct: 133 CCNAKDWKKALQLFEEIKS--IKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVC 190

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y++    C +  + +    +++ +    +  +   +  L                
Sbjct: 191 PNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLC------------ 238

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNW-QKALELYEHMKSIKLKPTVSTMNALITAL 384
           LQ   N  +S+G I  +  +G       W   A+++Y    S  L P+   ++ ++  L
Sbjct: 239 LQMFDND-LSLGNIVVTFNLGKPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCL 296



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/228 (19%), Positives = 94/228 (41%), Gaps = 16/228 (7%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K+   P     + L+ V   ++ ++ AF++++  +  G +     Y++L+  C  +    
Sbjct: 81  KIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWK 140

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++F E+ +  + P V    ALI       QV K+F     M+   V P+ + ++ L 
Sbjct: 141 KALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLF 200

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            AC ++       D+  ++  ++  +D +   +G L   C      D    +  ++  +N
Sbjct: 201 VACERNAEAQLGLDLFEQL--KIDSIDLNPTIVGCLTGLCLQ--MFDNDLSLGNIVVTFN 256

Query: 265 IKGTPEVYTIAINCCSQTGDW-EFACSVYDDMTKKGVIPDEVFLSALI 311
           + G P++             W   A  VY +    G++P    LS ++
Sbjct: 257 L-GKPQI----------ENKWTSSAIKVYREAISTGLLPSSDVLSQVL 293


>gi|414868247|tpg|DAA46804.1| TPA: hypothetical protein ZEAMMB73_186781 [Zea mays]
          Length = 498

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 208/365 (56%), Positives = 281/365 (76%)

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
           P+ PDH+T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA
Sbjct: 13  PIVPDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFA 72

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             +Y+DM + GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G+ VG I+YSSLMGA
Sbjct: 73  LKIYEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSSLMGA 132

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
           C NA +W+KAL+LYE +KSIKL P+VS MNALIT+LCDGDQ+ K +++L++M  LG+ PN
Sbjct: 133 CCNADDWKKALQLYEEIKSIKLTPSVSMMNALITSLCDGDQVLKAVDILNEMNILGVHPN 192

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
            ITYS+L VACER  + ++GL L  Q K DG+  N  +   + G+C + +    +L   +
Sbjct: 193 EITYSVLFVACERNGEAQLGLDLFEQLKMDGIDINPTIIGSLTGLCLQMFNIDFSLGNII 252

Query: 469 LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
           ++F+SG+PQI+NKWTS A+MVYREA+ AG +P+ +V+S+VLGCL+LP+ + ++   +EN+
Sbjct: 253 VNFSSGKPQIDNKWTSSAVMVYREAVSAGLLPSSDVLSQVLGCLRLPHGSSLKSTFIENM 312

Query: 529 GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHT 588
           GVS D  +  N+ SL +GFGEYD RAFS+LEEAAS G V  +S KE  +V+DARKL+I T
Sbjct: 313 GVSCDIPQYPNINSLFEGFGEYDIRAFSILEEAASLGAVASISIKETRIVIDARKLKIFT 372

Query: 589 AKVSL 593
           A+VSL
Sbjct: 373 AEVSL 377



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 7/230 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I P+  T GAL+  C  AGQ  +A   Y +++  N+K    V+   + +C  +G +  A 
Sbjct: 14  IVPDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFAL 73

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            +  +MN     V PD + + AL+    +A + D A E+ K      +      Y+  + 
Sbjct: 74  KIYEDMNR--IGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSSLMG 131

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
            C    DW+ A  +Y+++    + P    ++ALI       +V  A +IL E    G+  
Sbjct: 132 ACCNADDWKKALQLYEEIKSIKLTPSVSMMNALITSLCDGDQVLKAVDILNEMNILGVHP 191

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMK--SIKLKPTVSTMNALITALC 385
             I+YS L  AC      Q  L+L+E +K   I + PT+      +T LC
Sbjct: 192 NEITYSVLFVACERNGEAQLGLDLFEQLKMDGIDINPTII---GSLTGLC 238



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 119/316 (37%), Gaps = 67/316 (21%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T   LM  C  +  ++ A +V +++QE  +K   ++YT  + +C+ +G +    ++
Sbjct: 16  PDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKI 75

Query: 150 FHEMVNAGIEPNVHTYGALID-----------------------------------GCAK 174
           + +M   G++P+     AL+D                                    C  
Sbjct: 76  YEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSSLMGACCN 135

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
           A    KA   Y  ++S  + P   + NALIT+      V +A D+L EMN  +  V P+ 
Sbjct: 136 ADDWKKALQLYEEIKSIKLTPSVSMMNALITSLCDGDQVLKAVDILNEMN--ILGVHPNE 193

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF------- 287
           IT   L  AC   G+     ++++ +    I   P +       C Q  + +F       
Sbjct: 194 ITYSVLFVACERNGEAQLGLDLFEQLKMDGIDINPTIIGSLTGLCLQMFNIDFSLGNIIV 253

Query: 288 ----------------ACSVYDDMTKKGVIPDEVFLSALID--FAGHAGKVEAAFEILQE 329
                           A  VY +    G++P    LS ++      H   +++ F     
Sbjct: 254 NFSSGKPQIDNKWTSSAVMVYREAVSAGLLPSSDVLSQVLGCLRLPHGSSLKSTF----- 308

Query: 330 AKNQGISVGIISYSSL 345
            +N G+S  I  Y ++
Sbjct: 309 IENMGVSCDIPQYPNI 324



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 298 KGVIPDEVFLSALID---FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           K ++PD V + AL+     AG A +    +++LQE   +G       Y+  + +CS   +
Sbjct: 12  KPIVPDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPE---VYTIALRSCSLTGD 68

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
              AL++YE M  I +KP    ++AL+       +     E++ D ++ GL   TI YS 
Sbjct: 69  LGFALKIYEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSS 128

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L+ AC   DD +  L L  + K   + P++ M   +I
Sbjct: 129 LMGACCNADDWKKALQLYEEIKSIKLTPSVSMMNALI 165



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/370 (18%), Positives = 139/370 (37%), Gaps = 29/370 (7%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST---- 94
           G +   + + EDM R G+   D+++ +   +V    +    AF   K      L      
Sbjct: 67  GDLGFALKIYEDMNRIGV-KPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIA 125

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           ++ LM  C ++ D + A Q+   ++   L     +   LIT+     +V    ++ +EM 
Sbjct: 126 YSSLMGACCNADDWKKALQLYEEIKSIKLTPSVSMMNALITSLCDGDQVLKAVDILNEMN 185

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+ PN  TY  L   C + G+       +  ++   +  +  +  +L   C Q   +D
Sbjct: 186 ILGVHPNEITYSVLFVACERNGEAQLGLDLFEQLKMDGIDINPTIIGSLTGLCLQMFNID 245

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            +   +    +   P   +  T  A+M              VY+      +  + +V + 
Sbjct: 246 FSLGNIIVNFSSGKPQIDNKWTSSAVM--------------VYREAVSAGLLPSSDVLSQ 291

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            + C           +  ++M     IP    +++L  F G       AF IL+EA + G
Sbjct: 292 VLGCLRLPHGSSLKSTFIENMGVSCDIPQYPNINSL--FEGFGEYDIRAFSILEEAASLG 349

Query: 335 ISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLK-------PTVSTMNALITALCD 386
               I I  + ++      K +   + L   ++S+K +       P V+ +        D
Sbjct: 350 AVASISIKETRIVIDARKLKIFTAEVSLLRTLRSLKHRLAAGSRLPNVTILLPTEKKQVD 409

Query: 387 GDQLPKTMEV 396
            D+  KT+++
Sbjct: 410 IDEKEKTLKL 419


>gi|167998422|ref|XP_001751917.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162697015|gb|EDQ83352.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1216

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/577 (39%), Positives = 335/577 (58%), Gaps = 19/577 (3%)

Query: 23   HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
             D +  L  Y + +  GR+ +C+ +LE M+   +L+M KV    F++ CK ++A+KEAF+
Sbjct: 520  RDPAVYLFLYEKFLEAGRLRDCVAVLESMDEHLILNMKKVNSYEFYSACKKRRALKEAFK 579

Query: 83   FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            F +LV   +L  FNML+SVCA ++D+  A +VL +V+ AGL+ADC  YTTLI+ CAK+ +
Sbjct: 580  FSRLVRRKSLRNFNMLLSVCAHAQDASSACRVLDMVKMAGLQADCIFYTTLISACAKASR 639

Query: 143  VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            +D MF+ F+EM   GIE NV T+GA+IDGCA+AG V KAFG Y  M ++ V+PDRV+FN 
Sbjct: 640  IDLMFKFFNEMEIQGIEANVQTFGAMIDGCARAGDVPKAFGIYKKMLNQEVEPDRVIFNT 699

Query: 203  LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
            LITACG++GA  RAF+VLA+M     P+  DHIT GAL+ AC+ AG+V+RA EVYK +  
Sbjct: 700  LITACGRAGAFLRAFEVLADMRDAPQPIALDHITYGALIAACSRAGEVERALEVYKRMRS 759

Query: 263  YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              + GT E YT A++ CS  G    A S+YDDM + GV PDEVF  A++D AGHAGK++ 
Sbjct: 760  SKVSGTTECYTAAVHACSHKGYLNIALSIYDDMREDGVQPDEVFFCAMMDVAGHAGKIDV 819

Query: 323  AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
            AF ILQE KN G     ++Y++LM ACS   + + A+ +YE +K++ L+P +      + 
Sbjct: 820  AFAILQEMKNIGTKPSPVTYNTLMVACSKVDDAENAMRVYEEIKALGLRPIL-----FLL 874

Query: 383  ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
             L          E+ +  K      +       L    R D   + L L +Q K   +  
Sbjct: 875  GLSSQRWSGAGRELDNAFKDFCFAISD------LAEFPRDDQANLALELYNQIKGYSIEF 928

Query: 443  NLVMFKCIIGMCSRRYE-KARTLNE-HVLSFNSGRPQIE--NKWTSLALMVYREAIVAGT 498
               M   I+G+C  R E  A  L +  +L   +    ++    WT+  L+VY E + AG 
Sbjct: 929  TQQMCDSILGLCVSRVECGAPPLQDPKLLCIKTIEDDLDLHQFWTNQGLVVYDELLSAGL 988

Query: 499  IPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN--LCSLIDGFGEYDPRAFS 556
             PT+E V++VLGC+++         L+ + G S       N    ++ +    Y PRA +
Sbjct: 989  TPTLETVNRVLGCMRVSKRNS--RFLLSDEGCSNSRRHNKNRIFFNVEEACSVYLPRALT 1046

Query: 557  LLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSL 593
            L EEA S G++  V +   P+ VD R   I+  +V +
Sbjct: 1047 LYEEARSLGVIQEVDYAVAPIFVDMRTFPIYAVEVGV 1083


>gi|449489787|ref|XP_004158415.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Cucumis sativus]
          Length = 542

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 132/187 (70%), Positives = 163/187 (87%)

Query: 5   GKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
           GK +   P+PNGKH +Y +   +Q  SYN+ ++ GR+ +CI +L+DME++G+LDM+K+YH
Sbjct: 355 GKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYH 414

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            +FFN+CKS+KA++EAF++  L+ NPTLSTFNMLMSVCASS+DSE AFQV+RLVQEAG+K
Sbjct: 415 GKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMK 474

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
           ADCKLYTTLI+TC KSGKVDAMFEVFH MVNAG+EPNVHTYGALIDGCA+A QVAKAFG 
Sbjct: 475 ADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGV 534

Query: 185 YGIMRSK 191
           YGIMRSK
Sbjct: 535 YGIMRSK 541



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 5/161 (3%)

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           C + G +     +L +M  E   +D + I  G     C +   V  A +   +I      
Sbjct: 385 CLKGGRLHDCIRILQDMEKE-GILDMNKIYHGKFFNICKSKKAVQEAFQYTALIQN---- 439

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            T   + + ++ C+ + D E A  V   + + G+  D    + LI   G +GKV+A FE+
Sbjct: 440 PTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEV 499

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
                N G+   + +Y +L+  C+ A    KA  +Y  M+S
Sbjct: 500 FHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGVYGIMRS 540



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           +++        C    AV  AF   A +       +P   T   LM  CA++   +RA +
Sbjct: 410 NKIYHGKFFNICKSKKAVQEAFQYTALIQ------NPTLSTFNMLMSVCASSQDSERAFQ 463

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           V +++ +  +K   ++YT  I+ C ++G  +    V+  M   GV P+     ALID   
Sbjct: 464 VVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCA 523

Query: 316 HAGKVEAAFEI 326
            A +V  AF +
Sbjct: 524 RAAQVAKAFGV 534



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 7/163 (4%)

Query: 137 CAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
           C K G++     +  +M   GI + N   +G   + C     V +AF    ++++    P
Sbjct: 385 CLKGGRLHDCIRILQDMEKEGILDMNKIYHGKFFNICKSKKAVQEAFQYTALIQN----P 440

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
               FN L++ C  S   +RAF V+  +       D    T   L+  C  +G+VD   E
Sbjct: 441 TLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYT--TLISTCGKSGKVDAMFE 498

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           V+  +    ++     Y   I+ C++      A  VY  M  K
Sbjct: 499 VFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGVYGIMRSK 541



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 66/149 (44%), Gaps = 5/149 (3%)

Query: 317 AGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            G++     ILQ+ + +GI  +  I +      C + K  Q+A +    +++    PT+S
Sbjct: 388 GGRLHDCIRILQDMEKEGILDMNKIYHGKFFNICKSKKAVQEAFQYTALIQN----PTLS 443

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N L++         +  +V+  ++  G+  +   Y+ L+  C +   V+    +  + 
Sbjct: 444 TFNMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRM 503

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
              GV PN+  +  +I  C+R  + A+  
Sbjct: 504 VNAGVEPNVHTYGALIDGCARAAQVAKAF 532


>gi|149391327|gb|ABR25681.1| unknown [Oryza sativa Indica Group]
          Length = 222

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 135/219 (61%), Positives = 170/219 (77%)

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           MK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+DM K GV
Sbjct: 1   MKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGV 60

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+W+KAL+
Sbjct: 61  QPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQ 120

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+L VACE
Sbjct: 121 LFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACE 180

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           R  + ++GL L  Q K D +  N  +  C+ G+C + ++
Sbjct: 181 RNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFD 219



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 95/200 (47%), Gaps = 8/200 (4%)

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           M  C  +  ++ A +V +++QE  +K   ++YT  + +C+ +G +    +++ +M   G+
Sbjct: 1   MKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGV 60

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIM---RSKNVKPDRVVFNALITACGQSGAVDR 215
           +P+     AL+D    AG   +A  A+ IM   R+K  +   + +++L+ AC  +    +
Sbjct: 61  QPDEMFLSALVD---VAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKK 117

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  +  E+ +    + P    + AL+ A  +  QV ++ EV   + +  +      Y++ 
Sbjct: 118 ALQLFEEIKS--IKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVL 175

Query: 276 INCCSQTGDWEFACSVYDDM 295
              C +  + +    +++ +
Sbjct: 176 FVACERNAEAQLGLDLFEQL 195



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 2/194 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T   + + +  C+ + D   A ++   + + G++ D    + L+     + + DA FE+ 
Sbjct: 28  TPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIM 87

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +    G +     Y +L+  C  A    KA   +  ++S  + P   + NALITA    
Sbjct: 88  KDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDG 147

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             V ++F+VL+EM      V P+ IT   L  AC    +     ++++ +   +I   P 
Sbjct: 148 DQVLKSFEVLSEMKR--LGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPT 205

Query: 271 VYTIAINCCSQTGD 284
           +       C Q  D
Sbjct: 206 IVGCLTGLCLQMFD 219



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 70/160 (43%), Gaps = 2/160 (1%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K+   P     + L+ V   ++ ++ AF++++  +  G +     Y++L+  C  +    
Sbjct: 57  KIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWK 116

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++F E+ +  + P V    ALI       QV K+F     M+   V P+ + ++ L 
Sbjct: 117 KALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLF 176

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
            AC ++       D+  ++  ++  +D +   +G L   C
Sbjct: 177 VACERNAEAQLGLDLFEQL--KIDSIDLNPTIVGCLTGLC 214


>gi|5123699|emb|CAB45443.1| putative protein [Arabidopsis thaliana]
 gi|7270433|emb|CAB80199.1| putative protein [Arabidopsis thaliana]
          Length = 283

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 123/200 (61%), Positives = 155/200 (77%)

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           ME L ++K+LGL PNTITYS+L++A ERKDD EV   LLSQAK DGV PNL+M +CI  +
Sbjct: 1   MEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLLSQAKGDGVSPNLIMCRCITSL 60

Query: 454 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQ 513
           C RR+EKA    E V+SF SGRPQIENKWTS+ALMVYRE I  GT+PT EVVS+VLGCLQ
Sbjct: 61  CKRRFEKACAGGEPVVSFKSGRPQIENKWTSMALMVYRETISGGTVPTTEVVSQVLGCLQ 120

Query: 514 LPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFK 573
           LP++A +R+RL+  LG++  + K+ N+  L+DGFGEYDPRAFSLLEEA S G++P VSF 
Sbjct: 121 LPHDAALRDRLISTLGINISSQKQHNIFPLVDGFGEYDPRAFSLLEEATSLGVLPSVSFN 180

Query: 574 EIPVVVDARKLEIHTAKVSL 593
           +IP+  D  +L  + A+V L
Sbjct: 181 KIPLFFDTTELPKNVAEVYL 200


>gi|45773928|gb|AAS76768.1| At4g34820 [Arabidopsis thaliana]
          Length = 321

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 123/200 (61%), Positives = 155/200 (77%)

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           ME L ++K+LGL PNTITYS+L++A ERKDD EV   LLSQAK DGV PNL+M +CI  +
Sbjct: 1   MEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLLSQAKGDGVSPNLIMCRCITSL 60

Query: 454 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQ 513
           C RR+EKA    E V+SF SGRPQIENKWTS+ALMVYRE I  GT+PT EVVS+VLGCLQ
Sbjct: 61  CKRRFEKACAGGEPVVSFKSGRPQIENKWTSMALMVYRETISGGTVPTTEVVSQVLGCLQ 120

Query: 514 LPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFK 573
           LP++A +R+RL+  LG++  + K+ N+  L+DGFGEYDPRAFSLLEEA S G++P VSF 
Sbjct: 121 LPHDAALRDRLISTLGINISSQKQHNIFPLVDGFGEYDPRAFSLLEEATSLGVLPSVSFN 180

Query: 574 EIPVVVDARKLEIHTAKVSL 593
           +IP+  D  +L  + A+V L
Sbjct: 181 KIPLFFDTTELPKNVAEVYL 200


>gi|326532656|dbj|BAJ89173.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 558

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 141/168 (83%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           D S+ +  Y   +  GR+ +C+DLLE ME+KGLLDM K++HA F + CK Q+A+ EA RF
Sbjct: 391 DTSDYMRRYKSSLMDGRLKDCVDLLESMEQKGLLDMQKLHHASFLSACKKQRAVMEAVRF 450

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +L+ NP +STFNML+SVCA+SKD EGA QV+ L++EAGLK DCKLYTTLI+TCAK GKV
Sbjct: 451 CRLIENPKMSTFNMLLSVCANSKDFEGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKV 510

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           DAMFEVFHEMV+AGIEPNV+TYGALIDGCAKAGQVAKAFGAYGIM SK
Sbjct: 511 DAMFEVFHEMVSAGIEPNVNTYGALIDGCAKAGQVAKAFGAYGIMSSK 558



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%)

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            + + ++ C+ + D+E A  V   + + G+ PD    + LI      GKV+A FE+  E 
Sbjct: 461 TFNMLLSVCANSKDFEGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 520

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
            + GI   + +Y +L+  C+ A    KA   Y  M S
Sbjct: 521 VSAGIEPNVNTYGALIDGCAKAGQVAKAFGAYGIMSS 557



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%)

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +++ L+  C+N+K+++ AL++   +K   LKP       LI+      ++    EV  +M
Sbjct: 461 TFNMLLSVCANSKDFEGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 520

Query: 401 KSLGLCPNTITYSILLVACERKDDV 425
            S G+ PN  TY  L+  C +   V
Sbjct: 521 VSAGIEPNVNTYGALIDGCAKAGQV 545


>gi|255073535|ref|XP_002500442.1| predicted protein [Micromonas sp. RCC299]
 gi|226515705|gb|ACO61700.1| predicted protein [Micromonas sp. RCC299]
          Length = 800

 Score =  240 bits (613), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 185/604 (30%), Positives = 289/604 (47%), Gaps = 42/604 (6%)

Query: 28  QLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKL 86
            L  Y  L+  GR+   ++LL  ++  GL  +  +V +  F   C  + A+  AF F   
Sbjct: 7   HLQLYETLVDCGRLHNALELLRALKTAGLNTVGGRVSNKAFLRQCARRSAVAVAFDFVSF 66

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           V  P +  +NML+SVCAS+ DS  AF    ++ + G++ D   YTTLI+ CAK+G+++  
Sbjct: 67  VDYPDVRLYNMLLSVCASAADSRSAFAAFVMMYDNGVQPDVMAYTTLISACAKAGELEKA 126

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAK--AGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           FE F  M   G+E NV TYGAL+D  ++  A  + + F     M    V PD  + N ++
Sbjct: 127 FETFRRMEMDGLEGNVVTYGALMDALSRRVAATLRRCFDLREEMDDAGVAPDGTMINTIL 186

Query: 205 TACGQSG--------AVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           +ACG++         A+ +AFD+  EM +++   + PD  T  AL+KAC NAGQ  R   
Sbjct: 187 SACGRAAEVRALSADALQKAFDLYDEMESSDEADLAPDAYTYSALIKACVNAGQSMRGLS 246

Query: 256 VYK--MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           +Y   M     I+ +  V+  A+  CS   D   A ++++DM  + V PD +  + LI  
Sbjct: 247 LYDRAMDPSAGIEPSIMVFQEAMIACSHLADLGKAWAIWEDMRVERVAPDAMLYATLIAV 306

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
           AG AGK E A  ++ E +  G++     ++SL G  + A +          + S  L   
Sbjct: 307 AGRAGKREEAERVVFEMERAGVAPTPEVFASLAGIAARAGDGAGVESAIAEVASRGLAVP 366

Query: 374 VSTMNALITALC---DGDQLPKTM-EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           +   NAL+TA     D D   + M E  ++M++ GL P+  T+  LL +C R  D  +  
Sbjct: 367 LEMYNALVTAAARRGDVDAAQEAMFEAEAEMRAAGLEPDEQTWCELLSSCARHGDASLTW 426

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN-------------SGRP 476
               ++++ G  P+ V    +IG+      K R L +     N             +GR 
Sbjct: 427 DTYKRSRKAGQPPSEVALNILIGVT---LLKIRALTDPDDRRNIKRMSQWDQDDDSAGRK 483

Query: 477 QIENKWTSL---ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL-GVSA 532
           + E +WT     A+  Y EA VAG  P +   S +L CL+ P    +R    E   G  A
Sbjct: 484 KEEPEWTEWADRAIAAYHEATVAGVRPRLATFSAMLACLRPPTLPSLRAVDRETRPGSKA 543

Query: 533 DALKRS---NLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTA 589
           ++L R+      S  D    Y  RA  + EEA + G+VP  +  E   V D RK     A
Sbjct: 544 ESLARAVSHEDSSHEDARKYYPLRALIMYEEAQAIGVVPKFA-TETDSVYDIRKFPPAAA 602

Query: 590 KVSL 593
           +V++
Sbjct: 603 EVAV 606


>gi|414868246|tpg|DAA46803.1| TPA: hypothetical protein ZEAMMB73_186781 [Zea mays]
          Length = 175

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/157 (66%), Positives = 130/157 (82%)

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
           P+ PDH+T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA
Sbjct: 13  PIVPDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFA 72

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             +Y+DM + GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G+ VG I+YSSLMGA
Sbjct: 73  LKIYEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSSLMGA 132

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           C NA +W+KAL+LYE +KSIKL P+VS MNALIT+LC
Sbjct: 133 CCNADDWKKALQLYEEIKSIKLTPSVSMMNALITSLC 169



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 298 KGVIPDEVFLSALID---FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           K ++PD V + AL+     AG A +    +++LQE   +G       Y+  + +CS   +
Sbjct: 12  KPIVPDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPE---VYTIALRSCSLTGD 68

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
              AL++YE M  I +KP    ++AL+       +     E++ D ++ GL   TI YS 
Sbjct: 69  LGFALKIYEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSS 128

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L+ AC   DD +  L L  + K   + P++ M   +I
Sbjct: 129 LMGACCNADDWKKALQLYEEIKSIKLTPSVSMMNALI 165



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 2/154 (1%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I P+  T GAL+  C  AGQ  +A   Y +++  N+K    V+   + +C  +G +  A 
Sbjct: 14  IVPDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFAL 73

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            +  +MN     V PD + + AL+    +A + D A E+ K      +      Y+  + 
Sbjct: 74  KIYEDMNR--IGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSSLMG 131

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            C    DW+ A  +Y+++    + P    ++ALI
Sbjct: 132 ACCNADDWKKALQLYEEIKSIKLTPSVSMMNALI 165



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 4/139 (2%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+ TC  +G+ D   EV+  +    I+     Y   +  C+  G +  A   Y  M    
Sbjct: 24  LMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNRIG 83

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           VKPD +  +AL+   G +   D AF+++ +  A+   V    I   +LM AC NA    +
Sbjct: 84  VKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGT--IAYSSLMGACCNADDWKK 141

Query: 253 AREVYKMIHKYNIKGTPEV 271
           A ++Y+ I   +IK TP V
Sbjct: 142 ALQLYEEIK--SIKLTPSV 158



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T   LM  C  +  ++ A +V +++QE  +K   ++YT  + +C+ +G +    ++
Sbjct: 16  PDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKI 75

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM---RSKNVKPDRVVFNALITA 206
           + +M   G++P+     AL+D    AG   +A  A+ IM   R+K +    + +++L+ A
Sbjct: 76  YEDMNRIGVKPDEMFLSALVD---VAGHARRADAAFEIMKDARAKGLLVGTIAYSSLMGA 132

Query: 207 CGQSGAVDRAFDVLAEMNA 225
           C  +    +A  +  E+ +
Sbjct: 133 CCNADDWKKALQLYEEIKS 151



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 50/116 (43%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T   + + +  C+ + D   A ++   +   G+K D    + L+     + + DA FE+ 
Sbjct: 52  TPEVYTIALRSCSLTGDLGFALKIYEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIM 111

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            +    G+      Y +L+  C  A    KA   Y  ++S  + P   + NALIT+
Sbjct: 112 KDARAKGLLVGTIAYSSLMGACCNADDWKKALQLYEEIKSIKLTPSVSMMNALITS 167


>gi|307109972|gb|EFN58209.1| hypothetical protein CHLNCDRAFT_142073 [Chlorella variabilis]
          Length = 903

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 157/608 (25%), Positives = 274/608 (45%), Gaps = 71/608 (11%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN- 89
           Y  L    ++ E + ++++  R    D + ++ H RF     + +A+K+A RF +L+P  
Sbjct: 245 YEALCDGRQLDEALAVIKECIRASRTDVLGRLKHYRFLRPAATLRAVKQALRFVQLLPRQ 304

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
                T+NML+ VCA + D   A  V  ++Q AGL+ D  LYTTLI+ CA +G  +  F+
Sbjct: 305 YADARTYNMLLRVCAEAGDLRNALHVADMLQAAGLRMDSILYTTLISACAAAGDAEKAFQ 364

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQ-------------VAKAFGAYGIMRSKNVKP 195
           ++ +M   G+  +   Y +++  CA+                + +AF     M+   +  
Sbjct: 365 LYGQMRADGVPADKMVYSSVVKACAQQIDRLPQSERRQQLVLLERAFSLVEDMKGAKIPT 424

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAR 254
           D  V+NAL+TA G++  + RAF+VL +M   +H    P+  T  +L+ ACA AG    A 
Sbjct: 425 DAAVWNALVTAAGRAAQLQRAFNVLEDM---IHFGTRPNDRTYASLIDACARAGDKGLAL 481

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDW---EFACSVYDDMTKKGVIPDEVFLSALI 311
            VY+   +     T  VY+ A++ C Q  D    E    +Y DM +  V PD      L+
Sbjct: 482 RVYRKAQREGCARTLMVYSAAVHACIQAHDGCDSEAVMGIYGDMQRSHVAPDNQLFGMLM 541

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
             AG +G ++   ++  E + +G+     + S+LM          +A  +Y  +++    
Sbjct: 542 KAAGASGNLQLVLDLHDEMEREGLRPCTGTESALMAVHIRNGQVPEAQAVYRSLRAAGQW 601

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P     NAL+ A  +  +L   + ++ DM   GL P+  T+S +  AC+R D+ E+ L +
Sbjct: 602 PHAYATNALLNAYANNFRLGDVVSLVCDMAQGGLRPDGFTFSAIFNACQRADEAELALDV 661

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSRRYEKA-------------------------RTLNE 466
               K  GV  +      ++  C  R  ++                           L E
Sbjct: 662 ARLMKLRGVRMDETHAVILLRTCYNRLRQSWVPGGYPPHRADAGAGGGPLLGSRRSQLRE 721

Query: 467 HVL-SFNSGRPQIENK------WTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
            +L +    R Q+E +      W + A  +YREA+ AG  P++ +++++L CL++ +   
Sbjct: 722 RLLEALTPRRRQVELREPVDVAWVAQAFGIYREAVAAGVKPSMHMLNRMLMCLRVAWEGK 781

Query: 520 IRERLVENLGVSADALKRSNLCSLIDGF--------------GEYDPRAFSLLEEAASFG 565
                  ++    +AL   +L   + G               G Y  +A S++EEA    
Sbjct: 782 QAAAGEGHIVGGPEALLPHSLPGALGGGVAPAIPRQEKIGVEGVYHVQAVSIMEEAIISN 841

Query: 566 IVPCVSFK 573
           +VP  SFK
Sbjct: 842 VVP--SFK 847


>gi|145347434|ref|XP_001418171.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578400|gb|ABO96464.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 889

 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 168/686 (24%), Positives = 282/686 (41%), Gaps = 119/686 (17%)

Query: 15  NGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKS 73
           +G  AN     SE  + +  L+R  R+ + +DLL+ M+ +G+ ++ + V H  FF+ C+S
Sbjct: 18  DGTRANE----SEYFYIFRELVRCKRLHDSVDLLKHMKERGVKELGRRVSHRDFFSACRS 73

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            + +   F F  ++ +  +  +NML+  CA++ D + A   +  ++ AG + D + YTTL
Sbjct: 74  LRVVSVGFEFVDVIESGDIRPYNMLVHACATAGDLQAATLAIEKMKNAGFEPDLQAYTTL 133

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK------------------- 174
           +  C+K G V+  FEV+ E+  AG EPN  TYG++ID  ++                   
Sbjct: 134 LGACSKCGDVERAFEVYAELKRAGFEPNEKTYGSMIDAISRDLATSLKGSRKRRVDSEHV 193

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP----- 229
              +   F  +  +++ N+K D++V N+L+T C ++  V        E  A VH      
Sbjct: 194 RSTLQSCFMIFEEIKTTNMKLDKIVMNSLLTVCARAAVVPSVRKEACEKVAMVHDEMIER 253

Query: 230 -VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
             + D     AL+          RA E +  +H   I GT EVYT+ I    + G  + A
Sbjct: 254 GFELDSYAYQALICCALAEKNYTRAFEYFDEMHDAGINGTTEVYTVMIRAYGKLGKADKA 313

Query: 289 CSVYDDMTKKGVIPDEV-----------------------------------FLSALIDF 313
             ++  M +  +IPD++                                     S L   
Sbjct: 314 KLIWYAMLEDNIIPDQMSYATMMRLALLDEDDDFCDELMTSMRRNRVRPGPELYSTLTGV 373

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGI---------------------------------- 339
           A   G      EI+Q AK +G+   I                                  
Sbjct: 374 AARQGDASQVEEIMQNAKKRGVVAPIECYNSLIAAHARADRPDLAVEAAGKLEAAGYELD 433

Query: 340 -ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
            ISY  L+ A + A++ ++A  ++E +    ++PT  T N L+ A      + +   ++S
Sbjct: 434 AISYEGLIFAYAFARDVEEASNMFERLLESGIRPTFPTFNCLVAAHARSGDMDEACRLVS 493

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-----------VIPNLVMF 447
            MK  G   ++IT+  LL+   +  D+E    +  +++  G           +   LV  
Sbjct: 494 VMKQHGYVEDSITWRELLLGSVQSGDIEAAWKMYKESRASGNADSERALNTILGQTLVHI 553

Query: 448 KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 507
           + +  M +R   K         SF+     I  +WT  A+  + EA +AG  P VE +S 
Sbjct: 554 RSLTDMKNRSNGKPNEFG----SFDDEGDYIAQEWTERAVAAFHEATLAGIKPRVETLST 609

Query: 508 VLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIV 567
           +L CL+ P      E+        A A+      S  D    Y  +A  + EEA   GIV
Sbjct: 610 MLACLRPP---STDEQNAAEYSEVARAVSHET-SSHEDAARYYPSQALIMYEEAQGLGIV 665

Query: 568 PCVSFKEIPVVVDARKLEIHTAKVSL 593
           P  S  +   V D R+     A+V L
Sbjct: 666 PKFSRDDEDFVYDIREFPPAAAEVML 691


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/446 (29%), Positives = 208/446 (46%), Gaps = 17/446 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN  I    R G+    I LL +M   GL   D + +      C  +   KEA      
Sbjct: 217 SYNSAIKACGRGGQWERVIGLLREMPSVGLTP-DAITYNSVITGCGKEGQWKEALSVLTE 275

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   ++NM +  C  S   + A +VLR ++  G+  D   Y   I  C   G+
Sbjct: 276 MSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQ 335

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            +   ++  EM   G+ PN   + + I  C K GQ  KA      + +  + PD   FN+
Sbjct: 336 WETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNS 395

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
            I AC +SG    A ++L EM A+   + PD I+  + ++AC   GQ + A E+ + +  
Sbjct: 396 AIAACTKSGRWKEALELLKEMPAKR--LKPDAISYNSAIEACGKGGQWEMALELRRQMPT 453

Query: 263 YNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             +  TP V +  IAI  C + G W+    +   M  +G+ P+ +  ++ I   G  G+ 
Sbjct: 454 KGL--TPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQW 511

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E A ++L + K   ++   I+Y+S + ACS    W++A+ L   M    L P V +  A 
Sbjct: 512 EKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAA 571

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I A     Q  + +E+L  M + GL PN ITY+ ++ AC R  + E  L LL + KE  V
Sbjct: 572 IDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAV 631

Query: 441 IPNLVMFKCIIGMCSR--RYEKARTL 464
            P+L+ +   I  C +  R+E+A  L
Sbjct: 632 APDLMSYNLAISACGKRGRWEEALDL 657



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 202/424 (47%), Gaps = 9/424 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-----NPTLS 93
           G+  E + +L++M+  G++       A     C  Q   ++A    + +P     +P + 
Sbjct: 124 GKWREALGILDEMKEGGVVCAHSYTTA--ITTCGRQGQWEKALELLREIPEQEGVSPNVF 181

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
            +N  +  C S    E A  +LR + +  +  D   Y + I  C + G+ + +  +  EM
Sbjct: 182 CYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREM 241

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            + G+ P+  TY ++I GC K GQ  +A      M +K + P+ + +N  I ACG+SG  
Sbjct: 242 PSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRW 301

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A +VL +M  E   V PD I+  A +KAC   GQ + + ++   +    +      + 
Sbjct: 302 KEAVEVLRQM--ESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFN 359

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
            AI  C + G WE A  +  ++T  G+ PD    ++ I     +G+ + A E+L+E   +
Sbjct: 360 SAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAK 419

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            +    ISY+S + AC     W+ ALEL   M +  L P V + N  I A  +  +  + 
Sbjct: 420 RLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEG 479

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           +E+L  M + GL PN ITY+  +  C +    E  L LL++ KE  + P+ + +   I  
Sbjct: 480 LELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAA 539

Query: 454 CSRR 457
           CS+R
Sbjct: 540 CSKR 543



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 213/450 (47%), Gaps = 13/450 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  ++ +  SYN  IR     GR  E +++L  ME +G+   D + +      C      
Sbjct: 278 AKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTP-DVISYDAAIKACGGGGQW 336

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + +      +      P    FN  +  C      E A ++LR V   GL  D   + + 
Sbjct: 337 ETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSA 396

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I  C KSG+     E+  EM    ++P+  +Y + I+ C K GQ   A      M +K +
Sbjct: 397 IAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGL 456

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+ +  N  I ACG+ G      ++L +M A+   + P+ IT  + +K C   GQ ++A
Sbjct: 457 TPNVISSNIAIRACGERGRWQEGLELLRQMPAQ--GLTPNVITYNSAIKTCGKGGQWEKA 514

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            ++   + +  +      Y  AI  CS+ G W+ A ++  +M  +G+ PD +  +A ID 
Sbjct: 515 LDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDA 574

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
            G  G+ E A E+L++   +G++  +I+Y+S++ AC     W+KAL+L + +K   + P 
Sbjct: 575 YGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPD 634

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + + N  I+A     +  + +++L +M + GL P+ I+Y+  + AC  + + E  L LL+
Sbjct: 635 LMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALGLLN 694

Query: 434 QAKEDGVIPNLVMFKCIIGMCSR--RYEKA 461
                GV P    +   I  C +  R E+A
Sbjct: 695 LMGAHGVSPTATSYSLAIEACGKGGRREEA 724



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 188/376 (50%), Gaps = 9/376 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           ++   ++ C      E A ++LR + E  G+  +   Y + I  C    + +    +  E
Sbjct: 146 SYTTAITTCGRQGQWEKALELLREIPEQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLRE 205

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M +  + P+  +Y + I  C + GQ  +  G    M S  + PD + +N++IT CG+ G 
Sbjct: 206 MADREVVPDEISYNSAIKACGRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQ 265

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV- 271
              A  VL EM+A+   + P+ I+    ++AC  +G+   A EV + +    +  TP+V 
Sbjct: 266 WKEALSVLTEMSAK--GLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGV--TPDVI 321

Query: 272 -YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y  AI  C   G WE +  + D+M  +GV P+ +  ++ I   G  G+ E A E+L+E 
Sbjct: 322 SYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREV 381

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
              G++    S++S + AC+ +  W++ALEL + M + +LKP   + N+ I A   G Q 
Sbjct: 382 TALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQW 441

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              +E+   M + GL PN I+ +I + AC  +   + GL LL Q    G+ PN++ +   
Sbjct: 442 EMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSA 501

Query: 451 IGMCSR--RYEKARTL 464
           I  C +  ++EKA  L
Sbjct: 502 IKTCGKGGQWEKALDL 517



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 207/429 (48%), Gaps = 15/429 (3%)

Query: 22  AHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---Q 74
           +  V+  + SY+  I+     G+    +DLL++M  +G+      +++      K    +
Sbjct: 313 SQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWE 372

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           KA++       L   P  ++FN  ++ C  S   + A ++L+ +    LK D   Y + I
Sbjct: 373 KAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAI 432

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
             C K G+ +   E+  +M   G+ PNV +    I  C + G+  +       M ++ + 
Sbjct: 433 EACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLT 492

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ + +N+ I  CG+ G  ++A D+LA+M      + PD IT  + + AC+  G   R +
Sbjct: 493 PNVITYNSAIKTCGKGGQWEKALDLLAKMKELA--MTPDSITYNSAIAACSKRG---RWK 547

Query: 255 EVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           E   ++ +   +G TP+V  YT AI+   + G WE A  +   M  KG+ P+ +  +++I
Sbjct: 548 EAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVI 607

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
              G  G+ E A ++L+E K   ++  ++SY+  + AC     W++AL+L   M +  L 
Sbjct: 608 KACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLT 667

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P V +  + I A     +  K + +L+ M + G+ P   +YS+ + AC +    E  + L
Sbjct: 668 PDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEAVCL 727

Query: 432 LSQAKEDGV 440
           + +  + G+
Sbjct: 728 VREMAQRGL 736



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 176/388 (45%), Gaps = 11/388 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           + G+  + ++LL ++   GL   D          C      KEA    K +P     P  
Sbjct: 367 KGGQWEKAVELLREVTALGLTP-DATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDA 425

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            ++N  +  C      E A ++ R +   GL  +       I  C + G+     E+  +
Sbjct: 426 ISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQ 485

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G+ PNV TY + I  C K GQ  KA      M+   + PD + +N+ I AC + G 
Sbjct: 486 MPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGR 545

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV- 271
              A  +L EM  +   + PD I+  A + A    GQ +RA E+ + +    +  TP V 
Sbjct: 546 WKEAVALLREMPGQ--GLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGL--TPNVI 601

Query: 272 -YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   I  C + G+WE A  +  ++ +  V PD +  +  I   G  G+ E A ++L+E 
Sbjct: 602 TYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREM 661

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +G++  +ISY+S + AC+    W+KAL L   M +  + PT ++ +  I A   G + 
Sbjct: 662 PAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRR 721

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVA 418
            + + ++ +M   GL    I+ S+++ A
Sbjct: 722 EEAVCLVREMAQRGLSHRNISNSLIVEA 749



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 138/284 (48%), Gaps = 9/284 (3%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPTLST 94
           +GR  E ++LL  M  +GL      Y++      K    +KA+    +  +L   P   T
Sbjct: 473 RGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSIT 532

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N  ++ C+     + A  +LR +   GL  D   YT  I    K+G+ +   E+  +M 
Sbjct: 533 YNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMP 592

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+ PNV TY ++I  C + G+  KA      ++   V PD + +N  I+ACG+ G  +
Sbjct: 593 TKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWE 652

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A D+L EM AE   + PD I+  + ++AC   G+ ++A  +  ++  + +  T   Y++
Sbjct: 653 EALDLLREMPAE--GLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSL 710

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGV----IPDEVFLSALIDFA 314
           AI  C + G  E A  +  +M ++G+    I + + + AL D A
Sbjct: 711 AIEACGKGGRREEAVCLVREMAQRGLSHRNISNSLIVEALGDDA 754



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 132/299 (44%), Gaps = 31/299 (10%)

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ- 333
           A+   + TG W  A  + D+M + GV+    + +A I   G  G+ E A E+L+E   Q 
Sbjct: 116 ALREAATTGKWREALGILDEMKEGGVVCAHSYTTA-ITTCGRQGQWEKALELLREIPEQE 174

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+S  +  Y+S + AC +   W+ A+ L   M   ++ P   + N+ I A   G Q  + 
Sbjct: 175 GVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERV 234

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           + +L +M S+GL P+ ITY+ ++  C ++   +  L +L++    G+ P  + +   I  
Sbjct: 235 IGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRA 294

Query: 454 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV----EVVSKVL 509
           C R                SGR      W   A+ V R+    G  P V      +    
Sbjct: 295 CGR----------------SGR------WKE-AVEVLRQMESQGVTPDVISYDAAIKACG 331

Query: 510 GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
           G  Q   + D+ + +    GV+ + +  ++        G+++ +A  LL E  + G+ P
Sbjct: 332 GGGQWETSVDLLDEMA-GRGVAPNTIHFNSAIVACGKGGQWE-KAVELLREVTALGLTP 388


>gi|308804848|ref|XP_003079736.1| putative crp1 protein (ISS) [Ostreococcus tauri]
 gi|116058193|emb|CAL53382.1| putative crp1 protein (ISS) [Ostreococcus tauri]
          Length = 900

 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 171/675 (25%), Positives = 278/675 (41%), Gaps = 117/675 (17%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFF 84
           SE  H+Y  L+R  R+ + +DLL  M   G+ ++  +V H  FF  C+S K +   F F 
Sbjct: 38  SEYFHTYRALVRCRRLHDAVDLLRHMRGAGVRNLGARVSHRDFFRACRSLKVVSVGFEFL 97

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +++ +  +  +NML+  CA + D + A    + +  AG + D   YTTLI+ C+K G V+
Sbjct: 98  EVIESTDIRPYNMLVHACAQAGDIKAALLASKTMWNAGFRPDLHAYTTLISACSKGGDVE 157

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA-------------------FGAY 185
             FEVF EM   G+EPN  TY +LID   +   V  A                   F  Y
Sbjct: 158 RAFEVFEEMKKTGLEPNAQTYASLIDAIKREISVTVAGSKKRRIDDDSVRASLDRCFEVY 217

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAV--------DRAFDVLAEMNAEVHPVDPDHITI 237
             M+  +VK D  + N+L+ AC +  A         +RA  V A++ A+   +  D    
Sbjct: 218 EDMKKNSVKADIAMMNSLLNACSRVAAAPNLRKISCERAEAVRADIVAQ--GLKLDSYAY 275

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            +L+     +    +A E+Y  +    +  T EVYT+ I      G+ +    +++ M +
Sbjct: 276 ASLICCAVASENYIKAFELYDDMLDSGVSATAEVYTVMIRAYGILGEVQKTKDLWEKMLE 335

Query: 298 KGVIPDEVFLSALI---------DFA-----------------------------GHAGK 319
            GV PD++  + ++         DFA                             G A K
Sbjct: 336 SGVKPDQMAYATMMRIALLDNDEDFADDLMASMRMNRVRPGAELYVILTGVAARQGDATK 395

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNA--------------------------- 352
           +E   EIL  AK +GI+  I  Y+SL+ A + A                           
Sbjct: 396 IE---EILLTAKKRGITPPIECYNSLVAAHARADRPDLAIKAVEKLEKAGFEPDAITYEG 452

Query: 353 --------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
                   +++++A  ++E +    ++PT  TMN L+          +   ++  M   G
Sbjct: 453 LIFAHAWSRDYEEAKRIFERLVETGMRPTFPTMNCLVACEARRGHFDEVQSIIDMMHEYG 512

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
              + +T   LLV   R  D+E    +  +++  G + +      I+G           L
Sbjct: 513 YEDDEMTLRELLVGYARAGDIESAWRVYKESRAVGKVNSERALNTILGQTLVHIRSLTKL 572

Query: 465 NE------HVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 518
           N        + S++ G   +  +W   A+  + EA VAG +P VE  S +L CL+ P   
Sbjct: 573 NRGSQSRAELGSYDEGGNYVAQEWAERAVSAFHEATVAGIVPRVETFSTMLACLRPP--- 629

Query: 519 DIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVV 578
              E+   +    A A+    + S  D    Y  +A  + EEA S GIV   S  E   V
Sbjct: 630 STNEQNASDYSEVARAVSH-EMSSHEDAARYYPSQALIMYEEAQSLGIVAPFSRTE-DFV 687

Query: 579 VDARKLEIHTAKVSL 593
            D R+     A+V L
Sbjct: 688 YDIREFPPAAAEVML 702


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 206/418 (49%), Gaps = 13/418 (3%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS 100
           ++LL  M  +G    D + ++     C      KEA    + +      P +  ++  +S
Sbjct: 206 VELLASMAARGT-PPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAIS 264

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
            C      E A  +L+ +   GL  D   Y+T+I  CAK G+ +  F +  EM   G+  
Sbjct: 265 ACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVA 324

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           N+ TY  +I  CAK GQ  +A      M+   V PD + +++ I+AC + G  + A  +L
Sbjct: 325 NIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLL 384

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAIN 277
            EM  E   V P+ I+ G ++ ACA  G   R RE   ++ +    G P     Y+ AI+
Sbjct: 385 REMPME--GVTPNAISYGIVISACAKRG---RWREAIDLLQEMQAHGVPPDVINYSAAID 439

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
            C+Q   WE A  +  +M   G+ P+ +  ++ ID     G+ + A E+L+E    G++ 
Sbjct: 440 ACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAP 499

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
            +I+YS+++ +C+  + W++AL+L+  M+   + P V + N  I A   G    + ++VL
Sbjct: 500 DVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVL 559

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
            +M ++GL P+ I+Y   + AC + D  +  + LL +    G+ P+ + ++  +  CS
Sbjct: 560 GEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACS 617



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 239/485 (49%), Gaps = 30/485 (6%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           D   A  VL  +QE G+K D + Y++ I  C  + + +   E+   M   G  P+V TY 
Sbjct: 166 DWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYS 225

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           + I  CAK  +  +A G    M+ + VKP+ +V++A I+AC + G  + A D+L EM A 
Sbjct: 226 SAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAV 285

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTG 283
              + PD IT   ++ ACA  GQ + A   ++++ +   KG       Y+I I  C++ G
Sbjct: 286 --GLAPDVITYSTVIDACAKRGQWEPA---FRLLMEMPTKGVVANIITYSIVIGACAKWG 340

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
            WE A ++  +M + GV PD +  S+ I      G+ E A  +L+E   +G++   ISY 
Sbjct: 341 QWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYG 400

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            ++ AC+    W++A++L + M++  + P V   +A I A     +  + + +L +M + 
Sbjct: 401 IVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPAT 460

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKA 461
           GL PN I+Y+  + AC +    ++ + LL +    G+ P+++ +  +I  C+  R++E+A
Sbjct: 461 GLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEA 520

Query: 462 ---------RTLNEHVLSFNSG-RPQIENKWTSLALMVYREAIVAGTIP-TVEVVSKVLG 510
                    + +   V+S N+      +  W   AL V  E    G +P  +   + +  
Sbjct: 521 LDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDA 580

Query: 511 CLQLPYNADIRERLVE--NLGVSADALKRS---NLCSLIDGFGEYDPRAFSLLEEAASFG 565
           C +     +I + L E   +G++ DA+      + CS +DG  +    A  LL +  + G
Sbjct: 581 CAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACS-VDGLWK---EALVLLRDMLAVG 636

Query: 566 IVPCV 570
           + P V
Sbjct: 637 LSPDV 641



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 213/463 (46%), Gaps = 42/463 (9%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + G+    +DLL++M   GL   D + ++   + C  +   + AFR    +P       +
Sbjct: 268 KGGQWETAVDLLKEMPAVGLAP-DVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANI 326

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+++++  CA     E A  +LR +QE G+  D   Y++ I+ CAK G+ +    +  E
Sbjct: 327 ITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLRE 386

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G+ PN  +YG +I  CAK G+  +A      M++  V PD + ++A I AC Q+  
Sbjct: 387 MPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASR 446

Query: 213 VDRAFDVLAEMNA---------------------------------EVHPVDPDHITIGA 239
            ++A  +L EM A                                   H + PD IT  A
Sbjct: 447 WEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSA 506

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTK 297
           ++ +CA   Q + A ++++ + +  I  TP+V +   AIN C+Q G WE A  V  +M  
Sbjct: 507 VIASCAMGRQWEEALDLFREMQRQGI--TPDVVSCNTAINACAQGGWWEEALDVLGEMPT 564

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G++PD +     ID      + +   ++L+E    G++   ISY   M ACS    W++
Sbjct: 565 MGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKE 624

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           AL L   M ++ L P V T N+ I A   G +  +   +L  M + GL P+  +++  + 
Sbjct: 625 ALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAID 684

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 460
           AC   D     + +L + +  GV PN   +   +  C R  EK
Sbjct: 685 ACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYACKRCGEK 727



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 202/426 (47%), Gaps = 43/426 (10%)

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G   KA      M+ + VKPD   +++ I ACG +   +RA ++LA M A   P  PD +
Sbjct: 165 GDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTP--PDVL 222

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T  + + ACA   +   A  + + +    +K    VY+ AI+ C + G WE A  +  +M
Sbjct: 223 TYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEM 282

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
              G+ PD +  S +ID     G+ E AF +L E   +G+   II+YS ++GAC+    W
Sbjct: 283 PAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQW 342

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           ++A+ L   M+   + P V T ++ I+A     Q  + + +L +M   G+ PN I+Y I+
Sbjct: 343 EEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIV 402

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEK---------ARTL 464
           + AC ++      + LL + +  GV P+++ +   I  C++  R+E+         A  L
Sbjct: 403 ISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGL 462

Query: 465 NEHVLSFNS--------GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 516
             +V+S+NS        GR +I       A+ + RE    G  P V   S V+    +  
Sbjct: 463 TPNVISYNSAIDACAKTGRSKI-------AVELLREMPAHGLAPDVITYSAVIASCAMGR 515

Query: 517 NAD-----IRERLVENLGVSADALKRS---NLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
             +      RE  ++  G++ D +  +   N C+     G +   A  +L E  + G+VP
Sbjct: 516 QWEEALDLFRE--MQRQGITPDVVSCNTAINACAQ----GGWWEEALDVLGEMPTMGLVP 569

Query: 569 -CVSFK 573
             +S++
Sbjct: 570 DAISYR 575



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 102/186 (54%), Gaps = 2/186 (1%)

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           Q GDW  A  V D M ++GV PD    S+ I   G+A + E A E+L     +G    ++
Sbjct: 163 QYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVL 222

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +YSS + AC+    W++A+ L   MK   +KP V   +A I+A   G Q    +++L +M
Sbjct: 223 TYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEM 282

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RY 458
            ++GL P+ ITYS ++ AC ++   E    LL +    GV+ N++ +  +IG C++  ++
Sbjct: 283 PAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQW 342

Query: 459 EKARTL 464
           E+A  L
Sbjct: 343 EEAVAL 348



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 110/225 (48%), Gaps = 2/225 (0%)

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           A ++     G   +A +V   + +  +K   + Y+ AI  C     WE A  +   M  +
Sbjct: 156 ATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAAR 215

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G  PD +  S+ I       + + A  +L+  K QG+   +I YS+ + AC     W+ A
Sbjct: 216 GTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETA 275

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           ++L + M ++ L P V T + +I A     Q      +L +M + G+  N ITYSI++ A
Sbjct: 276 VDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGA 335

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKA 461
           C +    E  + LL + +E+GV P+++ +   I  C+++  +E+A
Sbjct: 336 CAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEA 380



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 29/266 (10%)

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           L A +  A   G    A ++L   + QG+     +YSS + AC NA+ W++A+EL   M 
Sbjct: 154 LKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMA 213

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +    P V T ++ I A     +  + + +L  MK  G+ PN I YS  + AC +    E
Sbjct: 214 ARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWE 273

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLA 486
             + LL +    G+ P+++ +  +I  C++R                       +W   A
Sbjct: 274 TAVDLLKEMPAVGLAPDVITYSTVIDACAKR----------------------GQWEP-A 310

Query: 487 LMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCS 542
             +  E    G +  +   S V+G      Q      +   + EN GV+ D +  S+  S
Sbjct: 311 FRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQEN-GVAPDVITYSSTIS 369

Query: 543 LIDGFGEYDPRAFSLLEEAASFGIVP 568
                G+++  A  LL E    G+ P
Sbjct: 370 ACAKKGQWE-EAVGLLREMPMEGVTP 394



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 5/186 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   + G   E +D+L +M   GL+  D + +    + C      KE     + +     
Sbjct: 544 NACAQGGWWEEALDVLGEMPTMGLVP-DAISYRTAIDACAKGDRWKEIIDLLREMSTVGL 602

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   ++   MS C+     + A  +LR +   GL  D   Y + I  CAK G+      
Sbjct: 603 TPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATV 662

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M   G+ P+V+++ A ID C    Q   A      MR+  V P+   +   + AC 
Sbjct: 663 LLRQMPTFGLAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNEATYLTAMYACK 722

Query: 209 QSGAVD 214
           + G  D
Sbjct: 723 RCGEKD 728


>gi|384251863|gb|EIE25340.1| hypothetical protein COCSUDRAFT_40616 [Coccomyxa subellipsoidea
           C-169]
          Length = 852

 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 150/556 (26%), Positives = 250/556 (44%), Gaps = 85/556 (15%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVC-------KSQKAIKEA 80
           L+ Y+ L  +GR+   ++++E   R    D + +V H  F  +          Q+A K A
Sbjct: 43  LNLYSDLAHEGRLEAALEIVEAAVRAKRDDILGRVRHNHFLRMAADQACGPNKQQATKLA 102

Query: 81  FRFFKLVPNP--TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
            RF +++P       T+NML+SVC  +KD   A     +++  G K D  LYT LI+ CA
Sbjct: 103 MRFVQVLPRKFTDARTYNMLVSVCVKAKDLTQALHAADMLKSTGRKLDTILYTNLISVCA 162

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK-------AGQ------VAKAFGAY 185
             G  DA FE++  M    ++     Y ALI  C++       A +      + +A G  
Sbjct: 163 AVGNADAAFELYAAMKAEAVKTEAQVYTALISACSREILDTPPANRRVQLVLLERARGVL 222

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           G +R+  ++PD +++NALITA G++G         +   A+ H       T  +L+ ACA
Sbjct: 223 GEVRANGLRPDAILWNALITAAGRAGQG-------SGCKADAH-------TYASLVDACA 268

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC--SQTGDWEFACSVYDDMTKKGVIPD 303
            AG+ D A  VY    +     +  VY  AI  C  ++  D   A  +Y DM + GV PD
Sbjct: 269 RAGRADLAIRVYHKALRERCDASLLVYASAIAACRTAKPVDLTTAMDIYGDMQRNGVDPD 328

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
           E   + L+  AG AG +E AF +  E    G+    ++ S+L+ AC +    ++A +LY 
Sbjct: 329 ERLYATLMGVAGAAGNLELAFSLQDEMVMDGLRPSKLTQSALIQACIDCGALERARQLYA 388

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M+     P++  +N LI A     +L   + ++ D+ + G+ P+  T++ +L AC+R +
Sbjct: 389 AMQEQGRAPSLQALNNLINAHGRACRLGDVVSLVQDLAAAGMRPDAFTFAAILNACQRAN 448

Query: 424 DVEVGLMLLSQA-------------------KEDGVIPNLVMFKCIIGMCSRRYE----- 459
           + E+   +  +A                   K+ G + +  +   ++ +C  R       
Sbjct: 449 EAELAFDVYRRAPPLHILNRSCVACLSYGILKQRGHLVDEAVCFILVRLCYNRLRDAWYP 508

Query: 460 -----KARTLNEHVLSFNSGRPQI-----------------ENKWTSLALMVYREAIVAG 497
                K  ++    L  N   P +                 E  W   A+ VYREA+ AG
Sbjct: 509 GGYPPKKSSVTASRLGRNPAGPALLRALGSVGNEHVGGSVGEAVWAQRAVDVYREALSAG 568

Query: 498 TIPTVEVVSKVLGCLQ 513
             P   V+ +VL CL+
Sbjct: 569 YRPRHHVLERVLACLR 584


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score =  191 bits (485), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 138/475 (29%), Positives = 229/475 (48%), Gaps = 44/475 (9%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G   D K Y   IT C + G+ +    +  EM   G  P++  Y A+ID CAK GQ   A
Sbjct: 28  GWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMA 87

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
                 M +K + PD   + A I AC + G    A D+L EM A    V P+ I   + +
Sbjct: 88  VFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLREMLA--RDVTPNVIIYNSAI 145

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKG 299
            +CA AGQ + A  + K +    +   P+V  Y+ AI+ C + G WE A  +++DM   G
Sbjct: 146 NSCAKAGQWEIAVSLVKEMATVGL--APDVISYSSAISACGRGGRWEEALELFEDMRTSG 203

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           V PD +   + I    + G+ + A  +L++    G++  +ISYSS++ AC+    W+ AL
Sbjct: 204 VAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIAL 263

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           +L   MK+++L P + T NA I A   G +  + +++L +M ++GL P+ ++YS ++ AC
Sbjct: 264 DLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDAC 323

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL---------NEHV 468
            + D  +  + +L +    G+ PN + +   I  C++  ++++A+ L          + V
Sbjct: 324 SKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRV 383

Query: 469 LSFNSGRPQIEN--KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE 526
           + +NS         +W   AL + RE      +PTV + + V       Y++ I      
Sbjct: 384 IGYNSAIAACAKGEQWKE-ALALLRE------MPTVGLHTTVFS-----YSSAIDACGKG 431

Query: 527 NLGVSADALKR---------SNLC--SLID--GFGEYDPRAFSLLEEAASFGIVP 568
           NL + A  L R         + +C  S ID  G G+    A  LL E  + G+ P
Sbjct: 432 NLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSP 486



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 208/439 (47%), Gaps = 7/439 (1%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A DV     + +   R GR  E ++L EDM   G+   D + +      C +    KEA 
Sbjct: 170 APDVISYSSAISACGRGGRWEEALELFEDMRTSGVAP-DVITYGSAIAACANGGRWKEAV 228

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              + +P     P + +++ +++ CA     + A  +LR ++   L  +   Y   I  C
Sbjct: 229 SLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDAC 288

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
           AK G+     ++  EM   G+ P+V +Y ++ID C+K  +  +A      M +  + P+ 
Sbjct: 289 AKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNA 348

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           + +N+ I AC + G    A  +L EM      V    I   + + ACA   Q   A  + 
Sbjct: 349 ISYNSAIDACAKGGQWKEAKGLLREM--PTAGVTQRVIGYNSAIAACAKGEQWKEALALL 406

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + +    +  T   Y+ AI+ C +   W  A  +  +M   G+ P+EV  ++ ID  G  
Sbjct: 407 REMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRG 466

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            + E A ++L+E    G+S  + SYSS + AC+    W++AL + + M +  L P +   
Sbjct: 467 DQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICY 526

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N+ I A   G +    + +L +M++ GL PN I+YS  + AC R    + G+ LL + + 
Sbjct: 527 NSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRG 586

Query: 438 DGVIPNLVMFKCIIGMCSR 456
            GV+P+++ +  ++  C++
Sbjct: 587 SGVVPDVITYHALMVTCAK 605



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 214/439 (48%), Gaps = 17/439 (3%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +Y+ +I    + G+    +  L +M  KG+    + Y A   N C      K A    
Sbjct: 68  LSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGA-AINACARGGRWKIALDLL 126

Query: 85  KLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +      P +  +N  ++ CA +   E A  +++ +   GL  D   Y++ I+ C + 
Sbjct: 127 REMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRG 186

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+ +   E+F +M  +G+ P+V TYG+ I  CA  G+  +A      + +  + P+ + +
Sbjct: 187 GRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISY 246

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +++ITAC + G    A D+L EM A    + P+ IT  A + ACA  G   R +E   ++
Sbjct: 247 SSVITACAKEGQWKIALDLLREMKA--MRLAPNIITYNAAIDACAKGG---RWKEAIDLL 301

Query: 261 HKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            +    G P     Y+  I+ CS+   W+ A  +  +M   G+ P+ +  ++ ID     
Sbjct: 302 REMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKG 361

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+ + A  +L+E    G++  +I Y+S + AC+  + W++AL L   M ++ L  TV + 
Sbjct: 362 GQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSY 421

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           ++ I A   G+   K  E+L +M ++GL PN + Y+  + AC R D  E  + LL +   
Sbjct: 422 SSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPT 481

Query: 438 DGVIPNLVMFKCIIGMCSR 456
            G+ P++  +   I  C++
Sbjct: 482 VGLSPDVFSYSSAIAACAK 500



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 186/363 (51%), Gaps = 2/363 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++ M ++ C      E A ++LR +   G   D   Y+ +I  CAK G+         EM
Sbjct: 35  SYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEM 94

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              GI P+  +YGA I+ CA+ G+   A      M +++V P+ +++N+ I +C ++G  
Sbjct: 95  PTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQW 154

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + A  ++ EM A V  + PD I+  + + AC   G+ + A E+++ +    +      Y 
Sbjct: 155 EIAVSLVKEM-ATVG-LAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYG 212

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
            AI  C+  G W+ A S+   +   G+ P+ +  S++I      G+ + A ++L+E K  
Sbjct: 213 SAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAM 272

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            ++  II+Y++ + AC+    W++A++L   M ++ L P V + +++I A   GD+  + 
Sbjct: 273 RLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEA 332

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           +++L +M ++GL PN I+Y+  + AC +    +    LL +    GV   ++ +   I  
Sbjct: 333 IDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAA 392

Query: 454 CSR 456
           C++
Sbjct: 393 CAK 395



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 110/244 (45%), Gaps = 15/244 (6%)

Query: 280 SQTGDWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
           S++GDW  A    D M K  G + D+      I   G  G+ E A  +L+E   +G +  
Sbjct: 8   SRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPD 67

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           + +YS+++ AC+    W+ A+     M +  + P   +  A I A   G +    +++L 
Sbjct: 68  LSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLR 127

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-- 456
           +M +  + PN I Y+  + +C +    E+ + L+ +    G+ P+++ +   I  C R  
Sbjct: 128 EMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGG 187

Query: 457 RYEKARTLNE---------HVLSFNSGRPQIEN--KWTSLALMVYREAIVAGTIPTVEVV 505
           R+E+A  L E          V+++ S      N  +W   A+ + R+    G  P V   
Sbjct: 188 RWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKE-AVSLLRKIPTVGLTPNVISY 246

Query: 506 SKVL 509
           S V+
Sbjct: 247 SSVI 250


>gi|303279733|ref|XP_003059159.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458995|gb|EEH56291.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1169

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 167/691 (24%), Positives = 271/691 (39%), Gaps = 135/691 (19%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNV 70
           P P+    N ++     L  Y+ L+  GR+   ++LL  M+  GL  +  ++ H  F   
Sbjct: 187 PLPHSTDINLSN-CKAHLALYDVLLDAGRLHNALELLRAMKAAGLNTVGGRISHKAFMRE 245

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
              ++A+  AF F   V  P +  +NML+SVCA++ D+   F    L+ +AG++ DCK Y
Sbjct: 246 AAKKRAVAVAFDFVAFVDYPDVRLYNMLLSVCAAAGDARSGFAAFVLMYDAGVRPDCKAY 305

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID-------------------- 170
           TTLI+ CAK+G V+  FE F  M   G+ P V TYGAL+D                    
Sbjct: 306 TTLISACAKAGDVEKAFETFRRMKEDGVAPTVVTYGALMDALSRRVKELTHGQSSSSGAN 365

Query: 171 --------------------GCAKAGQ--VAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
                               GCA   +  + + F     M    + PD  V N+L++ACG
Sbjct: 366 AGAAATTTAKAKHCDVDNTNGCADDVESLLDRCFELKADMLDDGIVPDACVLNSLLSACG 425

Query: 209 Q--------SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +        S A+ RAF+V  E  A    +  D  T  +L++ACANAG+ +R   +Y+ +
Sbjct: 426 RAAVVKPLASEALRRAFEVYDEFEASAGVLRCDAYTYASLIQACANAGEPERGLALYERM 485

Query: 261 HKYNIKGTPEVYTIAINCCS---------QTGDWEFACSVYDDMTKKG--VIPDEVFLSA 309
               ++ T EVY  AI+ C+         +  D   A  V+DDM +      PD +  + 
Sbjct: 486 AGEKVRRTKEVYAAAIHACAGSRRAASGGRAADLRRALRVWDDMRRSADRTTPDAMLYAT 545

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA----------------- 352
           L+D A  AG+   A E++ E +  G++     ++++ G  +                   
Sbjct: 546 LMDVAARAGERGVAAEVMDEMERDGVAPTTEVFATMAGIAAREGDVAGVEKVLDEMTERG 605

Query: 353 ------------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
                              +   A +  E + +  L   V+T   LI             
Sbjct: 606 SPPPISAFNALIAAAARRGDVAAATDACERLAAAGLSKDVNTHENLIRTAAHARDASAAW 665

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
               D  +  + P    ++ L+ A  R  D++     +   K  G +P+   ++ ++  C
Sbjct: 666 AFYDDALAAEMEPTRPMFNALVYASGRGGDLKRTFEAVDAMKARGHVPDETTWRELLSSC 725

Query: 455 SRRYEKARTLNEHVLSFNSGRPQIE---------------------------------NK 481
           +R  + A   + +  S  +G    E                                  +
Sbjct: 726 ARHGDAALAWDTYKASRKAGTEPSEVALNIIIGVTLMKIRELTDPTRGGGAKEGDREWKE 785

Query: 482 WTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLP----YNADIRERLVENLGVSADALKR 537
           W   A+ VY EA VAG  P +   S +L CL+ P      A  R+    +   +      
Sbjct: 786 WADRAVAVYHEATVAGVRPRLATFSAMLACLRPPTIPALQAVDRDAGSGSAAAALAHAVS 845

Query: 538 SNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
               S  D    Y  RA  L EEA + G+VP
Sbjct: 846 HEDTSHEDARKYYPLRALILYEEAQALGVVP 876


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 214/461 (46%), Gaps = 26/461 (5%)

Query: 16  GKHANYAHDVSEQL---------HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV 62
           G+    A D+ E++          +YN +I    + GR  E +DLL  M    +   D +
Sbjct: 230 GRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDI-PADVI 288

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            ++     C   +  KEA    + +     +P + ++N  +  CA     + A  +LR +
Sbjct: 289 SYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREM 348

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
              GL      Y +    CA +G+     E+  EM   GI PN  +Y + +D CAK GQ 
Sbjct: 349 TTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQW 408

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            KA      M +    PD + FN+ I ACG+    + A ++L EM      + P+ IT  
Sbjct: 409 EKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREM--PTAGLTPNVITYN 466

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDM 295
           + ++AC   G+  R +E   +  +   +G +P V  Y   I+ C++   WE A  +   M
Sbjct: 467 SAIEAC---GRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGM 523

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             +GV PD +  ++ I+  G   + E A ++L+    +G    IISY+S + AC+ +  W
Sbjct: 524 PARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRW 583

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           ++AL L + M ++ L P   +  A I A   G+Q    + +L +M++ G  PN ITYS  
Sbjct: 584 REALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLITYSAA 643

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           + AC ++   +  + LL+  +  G+ P+   +  +I    R
Sbjct: 644 IDACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISAFQR 684



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 218/453 (48%), Gaps = 19/453 (4%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V   L +YN  I    +  R  E +DLLE++  +G     + Y+    + C      
Sbjct: 210 AQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNP-VIDACAKGGRW 268

Query: 78  KEAFRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            EA           +P   +S ++ +++ C   +  + A  +L  ++  G+  +   Y +
Sbjct: 269 LEAMDLLGQMLTNDIPADVIS-YSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNS 327

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
            I  CAK  +     ++  EM   G+ P V +Y +    CA  G+  +A      M ++ 
Sbjct: 328 AIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQG 387

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + P+ + +N+ + AC + G  ++A  +L  M+      DPD I+  + + AC    Q + 
Sbjct: 388 IAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGS--DPDIISFNSAIDACGRGQQWET 445

Query: 253 AREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           A E+ + +    +  TP V  Y  AI  C ++  W+ A  ++ +M  +G+ P+ V  +++
Sbjct: 446 AVELLREMPTAGL--TPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSM 503

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID      + E A ++L     +G++  +ISY+S + AC   + W+ AL+L + M +   
Sbjct: 504 IDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGP 563

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           KP + + N+ +TA     +  + + +L DM ++GL PNT++Y   + AC + +  +V + 
Sbjct: 564 KPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVR 623

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 461
           +L + +  G  PNL+ +   I  C++  R+++A
Sbjct: 624 ILKEMQTHGATPNLITYSAAIDACAKQGRWKEA 656



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 215/467 (46%), Gaps = 30/467 (6%)

Query: 31  SYNRLI---RQGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN  I     GR  +  + LL +M  +G+   D V +      C      KEA      
Sbjct: 112 SYNIAIAACSNGRQWATAVRLLREMPTEGVTP-DVVTYNSAIAACSKGGRWKEAMDLLTQ 170

Query: 87  VPNPT------LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  PT      + T+N  ++ C++    + A  +L  +   G+  +   Y + I  CAK 
Sbjct: 171 MVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKG 230

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            + +   ++  E++  G  P+  TY  +ID CAK G+  +A    G M + ++  D + +
Sbjct: 231 RRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISY 290

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +++I ACG+      A D+L +M      V P+ I+  + + ACA     DR +E   ++
Sbjct: 291 SSVIAACGRGRRWKEAMDLLEQM--RTQGVSPNVISYNSAIDACAKG---DRWKEALDLL 345

Query: 261 HKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            +    G  P V  Y  A   C+  G W  A  +  +M  +G+ P+ +  ++ +D     
Sbjct: 346 REMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKG 405

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+ E A ++L+     G    IIS++S + AC   + W+ A+EL   M +  L P V T 
Sbjct: 406 GQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITY 465

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N+ I A     +  + M +  +M + GL PN +TY+ ++ AC + +  E+ + LL+    
Sbjct: 466 NSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPA 525

Query: 438 DGVIPNLVMFKCIIGMCSR--RYEKA---------RTLNEHVLSFNS 473
            GV P+++ +   I  C +  ++E A         R     ++S+NS
Sbjct: 526 RGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNS 572



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 199/429 (46%), Gaps = 50/429 (11%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +++N+ ++ C++ +    A ++LR +   G+  D   Y + I  C+K G+     ++  +
Sbjct: 111 TSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQ 170

Query: 153 MV--NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           MV    GI P+V TY + I  C+  G+  +A      M ++ V P+ + +N+ I AC + 
Sbjct: 171 MVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKG 230

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-------------------- 250
              + A D+L E+  +  P  P   T   ++ ACA  G+                     
Sbjct: 231 RRWEEAMDLLEEVIEQGFP--PSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVI 288

Query: 251 ------------DRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDM 295
                        R +E   ++ +   +G +P V  Y  AI+ C++   W+ A  +  +M
Sbjct: 289 SYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREM 348

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
           T  G++P  +  ++        G+   A E+L+E   QGI+   ISY+S + AC+    W
Sbjct: 349 TTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQW 408

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           +KA++L   M ++   P + + N+ I A   G Q    +E+L +M + GL PN ITY+  
Sbjct: 409 EKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSA 468

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYE---------KARTL 464
           + AC R    +  + L  +    G+ PN+V +  +I  C++  ++E          AR +
Sbjct: 469 IEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGV 528

Query: 465 NEHVLSFNS 473
              V+S+NS
Sbjct: 529 APDVISYNS 537



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 194/418 (46%), Gaps = 24/418 (5%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
           A  +D   A   L   + +G   D   Y   I  C+   +      +  EM   G+ P+V
Sbjct: 86  AKGRDWRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDV 145

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIM--RSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
            TY + I  C+K G+  +A      M   ++ + PD V +N+ I AC   G    A D+L
Sbjct: 146 VTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLL 205

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
            +M A+  P  P+ IT  + + ACA   + + A ++ + + +     +   Y   I+ C+
Sbjct: 206 EQMVAQGVP--PNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACA 263

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           + G W  A  +   M    +  D +  S++I   G   + + A ++L++ + QG+S  +I
Sbjct: 264 KGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVI 323

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           SY+S + AC+    W++AL+L   M ++ L PTV + N+   A     +  + +E+L +M
Sbjct: 324 SYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEM 383

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RY 458
            + G+ PNTI+Y+  L AC +    E  + LL      G  P+++ F   I  C R  ++
Sbjct: 384 PAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQW 443

Query: 459 EKA---------RTLNEHVLSFNS-----GRPQIENKWTSLALMVYREAIVAGTIPTV 502
           E A           L  +V+++NS     GR     +W   A+ ++RE    G  P V
Sbjct: 444 ETAVELLREMPTAGLTPNVITYNSAIEACGR---SARWQE-AMGLFREMPTRGLSPNV 497



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 121/269 (44%), Gaps = 26/269 (9%)

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A   L E K  G S+   SY+  + ACSN + W  A+ L   M +  + P V T N+ I 
Sbjct: 94  ALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIA 153

Query: 383 ALCDGDQLPKTMEVLSDM--KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           A   G +  + M++L+ M   + G+ P+ +TY+  + AC      +  + LL Q    GV
Sbjct: 154 ACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGV 213

Query: 441 IPNLVMFKCIIGMCS--RRYEKARTLNEHVL------SFNSGRPQIE-----NKWTS--- 484
            PNL+ +   IG C+  RR+E+A  L E V+      S  +  P I+      +W     
Sbjct: 214 PPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMD 273

Query: 485 -LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSL 543
            L  M+  + I A  I    V++      +     D+ E++    GVS + +  +   S 
Sbjct: 274 LLGQMLTND-IPADVISYSSVIAACGRGRRWKEAMDLLEQM-RTQGVSPNVISYN---SA 328

Query: 544 IDGFGEYD--PRAFSLLEEAASFGIVPCV 570
           ID   + D    A  LL E  + G+VP V
Sbjct: 329 IDACAKGDRWKEALDLLREMTTVGLVPTV 357



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 108/239 (45%), Gaps = 20/239 (8%)

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
           +  ++W+ AL   +  K        ++ N  I A  +G Q    + +L +M + G+ P+ 
Sbjct: 86  AKGRDWRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDV 145

Query: 410 ITYSILLVACERKDDVEVGLMLLSQ--AKEDGVIPNLVMFKCIIGMCSR--RYEKARTLN 465
           +TY+  + AC +    +  + LL+Q  A  +G+ P++V +   I  CS   R+++A  L 
Sbjct: 146 VTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLL 205

Query: 466 E---------HVLSFNS--GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQ 513
           E         +++++NS  G      +W   A+ +  E I  G  P+    + V+  C +
Sbjct: 206 EQMVAQGVPPNLITYNSAIGACAKGRRWEE-AMDLLEEVIEQGFPPSTRTYNPVIDACAK 264

Query: 514 LPYNADIRERLVENL--GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
                +  + L + L   + AD +  S++ +   G G     A  LLE+  + G+ P V
Sbjct: 265 GGRWLEAMDLLGQMLTNDIPADVISYSSVIAAC-GRGRRWKEAMDLLEQMRTQGVSPNV 322


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 205/429 (47%), Gaps = 10/429 (2%)

Query: 34  RLIRQGRISECIDLLEDM--ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT 91
           +++ QGR+ + +DLL  +  E  GL  +D+         C  ++   +  R   ++  P 
Sbjct: 165 QVVAQGRLGKAVDLLVSLSEEEDGLHAIDRALVNFVLYNCMRRR---DWTRALTVLDAPL 221

Query: 92  LST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +      F M +  C  ++    A  VLR +Q  GL+ D   + T +    K+G+ D   
Sbjct: 222 IEVDVVGFTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLAL 281

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E+F E+ + G  PN+ +Y   I  C +AG V +A      M+  +V+PD V +N ++ A 
Sbjct: 282 ELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAF 341

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +      A ++LAEM  E   VDPD I+    M  CA AG+ +RA E+        ++ 
Sbjct: 342 AKKNQWKAALELLAEMK-EAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQP 400

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   ++ C + G++  A  ++  M + GV PD V  +  +     A K +AA +IL
Sbjct: 401 DVVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQIL 460

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E + + I+  + SY+  + AC  A  W++ALEL E M+   +   V T  A + A C G
Sbjct: 461 REMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRG 520

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             + + + +L +M   G+ PN ++Y+I + A  R    +    +L Q  + G+  + V +
Sbjct: 521 GAVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAVLEQMVQRGLRLDSVSY 580

Query: 448 KCIIGMCSR 456
           +  +    R
Sbjct: 581 RTALSTAGR 589


>gi|253761756|ref|XP_002489253.1| hypothetical protein SORBIDRAFT_0012s017740 [Sorghum bicolor]
 gi|241947113|gb|EES20258.1| hypothetical protein SORBIDRAFT_0012s017740 [Sorghum bicolor]
          Length = 656

 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/221 (47%), Positives = 133/221 (60%), Gaps = 31/221 (14%)

Query: 118 VQEAGLKA------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171
           V+  GLK       DC     L+ +  ++G +D M +VFHEMV AGIEPNV+TY ALIDG
Sbjct: 387 VKRGGLKGTKETLKDC---MDLLESMEQNGLLD-MKKVFHEMVGAGIEPNVNTYSALIDG 442

Query: 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE----- 226
           CA+AGQVAKAFGAYGIM SK VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE     
Sbjct: 443 CARAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAESSESK 502

Query: 227 -VHPVDPDHITIGALMKACAN------------AGQVDRAREVYKMIHKYNIKG---TPE 270
              P+ PDH+T+GALMK C              AG   RA   ++++     KG      
Sbjct: 503 GSKPIIPDHVTVGALMKTCIQACQMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTI 562

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            Y+  +  C    DW+ A  +Y+++    + P    ++ALI
Sbjct: 563 AYSSLMGACCNAEDWKKALQLYEEIKSIKLTPSVSMMNALI 603



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 103/239 (43%), Gaps = 49/239 (20%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100
           + +C+DLLE ME+ GLLDM KV+H                         P ++T++ L+ 
Sbjct: 399 LKDCMDLLESMEQNGLLDMKKVFH-----------------EMVGAGIEPNVNTYSALID 441

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE- 159
            CA +     AF    ++    +K D  ++  LI+ C +SG V   F+V  EM     E 
Sbjct: 442 GCARAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAESSES 501

Query: 160 -------PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
                  P+  T GAL+  C +A Q                    +  +AL+   G +  
Sbjct: 502 KGSKPIIPDHVTVGALMKTCIQACQ--------------------MFLSALVDVAGHARR 541

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            D AF+++ +  A+   V    I   +LM AC NA    +A ++Y+ I   +IK TP V
Sbjct: 542 ADAAFEIMKDARAKGLLVGT--IAYSSLMGACCNAEDWKKALQLYEEIK--SIKLTPSV 596



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 95/228 (41%), Gaps = 63/228 (27%)

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+++    G +D  +  ++M+    I+     Y+  I+ C++ G    A   Y  M+ K 
Sbjct: 405 LLESMEQNGLLDMKKVFHEMV-GAGIEPNVNTYSALIDGCARAGQVAKAFGAYGIMSSKK 463

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQE-----AKNQG--------ISVGIIS----- 341
           V PD V  +ALI   G +G V  AF++L E     ++++G        ++VG +      
Sbjct: 464 VKPDRVVFNALISACGESGAVARAFDVLSEMTAESSESKGSKPIIPDHVTVGALMKTCIQ 523

Query: 342 -----YSSLMGACSNAKNWQKALE-----------------------------------L 361
                 S+L+    +A+    A E                                   L
Sbjct: 524 ACQMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSSLMGACCNAEDWKKALQL 583

Query: 362 YEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGL 405
           YE +KSIKL P+VS MNALIT+LC+      ++ KT  +L      GL
Sbjct: 584 YEEIKSIKLTPSVSMMNALITSLCNVWSGSSEIDKTTNILKRKTIRGL 631



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 29/174 (16%)

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++  E    GI   + +YS+L+  C+ A    KA   Y  M S K+KP     NALI+A 
Sbjct: 419 KVFHEMVGAGIEPNVNTYSALIDGCARAGQVAKAFGAYGIMSSKKVKPDRVVFNALISAC 478

Query: 385 CDGDQLPKTMEVLSDMK--------SLGLCPNTITYSILLVAC----------------- 419
            +   + +  +VLS+M         S  + P+ +T   L+  C                 
Sbjct: 479 GESGAVARAFDVLSEMTAESSESKGSKPIIPDHVTVGALMKTCIQACQMFLSALVDVAGH 538

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSF 471
            R+ D    +M  ++AK  G++   + +  ++G C  +  ++KA  L E + S 
Sbjct: 539 ARRADAAFEIMKDARAK--GLLVGTIAYSSLMGACCNAEDWKKALQLYEEIKSI 590


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 188/389 (48%), Gaps = 4/389 (1%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K  P+P + T+N L++  A +   E A  +   ++ A    D   Y+ LI +  ++GK 
Sbjct: 1   MKGFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKW 60

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +A  EV  EM   G +PN+ TY  L+D   KAGQ  +A      MR     PD   +N L
Sbjct: 61  EAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCL 120

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I+  G++G +  AF + AEM        PD  T  +L+      G+  +A E+ + + ++
Sbjct: 121 ISTLGKAGRLSEAFTLFAEMRE--RGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERH 178

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                   Y+  I    + G+   A  ++ +M ++G  PD +  +AL+D  G AG+V+ A
Sbjct: 179 GCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDA 238

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E+L E K +G+  G+++Y++L+       +  +A  L + MK    KP V T + LIT 
Sbjct: 239 LELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITG 298

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L    QL +  +VL  M+  G  P+TITY+ L+    +   +     L  + K  G  P+
Sbjct: 299 LIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPD 358

Query: 444 LVMFKCIIGMCSR--RYEKARTLNEHVLS 470
           +V +  +I    +  R E A  L E + S
Sbjct: 359 VVTYSTLITALGKAARVESACVLFEEMES 387



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 197/426 (46%), Gaps = 11/426 (2%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A      L +YN L+    + G+  E + LL +M   G +   + Y+     + K+ + +
Sbjct: 72  AKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGR-L 130

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EAF  F  +      P   T+N L+        S+ A ++L  ++  G   D   Y++L
Sbjct: 131 SEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSL 190

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           IT   K G+    F++F EM   G +P+  T+ AL+D   KAG+V  A      M+ + V
Sbjct: 191 ITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGV 250

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KP  V +NALI   G+ G +  A+++L EM    +   PD +T   L+     A Q+D A
Sbjct: 251 KPGVVTYNALIAGFGKVGDLVEAYNLLDEMKR--NGCKPDVVTYSCLITGLIKASQLDEA 308

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            +V K + K         Y   IN   + G    A  ++D M  KG  PD V  S LI  
Sbjct: 309 CQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITA 368

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
            G A +VE+A  + +E ++ GI   + +Y S++     A     A  L+  M+   L P 
Sbjct: 369 LGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPD 428

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           V T NA + +L  G +  +  ++  DMK  GL P+  TY  LL+   +  +V+    LL 
Sbjct: 429 VITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLK 488

Query: 434 QAKEDG 439
           +  E G
Sbjct: 489 ELIEQG 494



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 143/568 (25%), Positives = 242/568 (42%), Gaps = 67/568 (11%)

Query: 10  QFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN 69
           Q  +   K A +  DV       N L R G+    ++++ +M+ KG              
Sbjct: 29  QLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKG-------------- 74

Query: 70  VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            CK                 P L T+N L+     +   + A ++L  +++ G   D + 
Sbjct: 75  -CK-----------------PNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRT 116

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  LI+T  K+G++   F +F EM   G  P+  TY +LI G  K G+  KA      M 
Sbjct: 117 YNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEME 176

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
                PD + +++LIT  G+ G   +AF +  EM        PD IT  ALM A   AG+
Sbjct: 177 RHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRK--PDSITFTALMDALGKAGR 234

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           VD A E+   + +  +K     Y   I    + GD   A ++ D+M + G  PD V  S 
Sbjct: 235 VDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSC 294

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     A +++ A ++L++ + +G     I+Y++L+     A     A  L++ MKS  
Sbjct: 295 LITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKG 354

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P V T + LITAL    ++     +  +M+S+G+ P+  TY  ++    +   V+   
Sbjct: 355 CNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDAD 414

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLAL 487
            L S+ +  G+ P+++ +   +    R  R+++AR                         
Sbjct: 415 RLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARK------------------------ 450

Query: 488 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD----IRERLVENLGVSADALKRSNLCSL 543
            ++ +   +G +P V     +L  L      D    + + L+E  G + D+LK      +
Sbjct: 451 -IFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQ-GCAFDSLKFDECLEI 508

Query: 544 IDGFGEYDPRAFSLLEEAASFGIVPCVS 571
           +  +G  D  A  LL+ A S G+ P  S
Sbjct: 509 LTSWGNVD-EAHELLQFANSKGLWPGAS 535



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 212/458 (46%), Gaps = 10/458 (2%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN---VCKSQKAIKEAF 81
           + +YN LI    + GR+SE   L  +M  +G +     Y++  +    V +SQKA++   
Sbjct: 114 VRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLE 173

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              +    P + T++ L++      ++  AF++ + ++  G K D   +T L+    K+G
Sbjct: 174 EMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAG 233

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +VD   E+  EM   G++P V TY ALI G  K G + +A+     M+    KPD V ++
Sbjct: 234 RVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYS 293

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LIT   ++  +D A  VL +M  E  P  PD IT   L+     AG ++ A  ++  + 
Sbjct: 294 CLITGLIKASQLDEACQVLKKMEKEGCP--PDTITYNTLINGLGKAGLLNDAGRLFDRMK 351

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                     Y+  I    +    E AC ++++M   G+ PD     ++I   G AG+V+
Sbjct: 352 SKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVD 411

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +  E + +G+S  +I+Y++ + +      +++A +++E MK   L P V+T +AL+
Sbjct: 412 DADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALL 471

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             L    ++     +L ++   G   +++ +   L       +V+    LL  A   G+ 
Sbjct: 472 LGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLW 531

Query: 442 PNLVMFKCIIGMCSRRYEKARTLNE-HVLSFNSGRPQI 478
           P    +  +I   ++    +   N    L    G+P I
Sbjct: 532 PGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDI 569



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/426 (25%), Positives = 193/426 (45%), Gaps = 11/426 (2%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H     + +Y+ LI    + G   +   L ++M+R+G    D +      +       + 
Sbjct: 178 HGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGR-KPDSITFTALMDALGKAGRVD 236

Query: 79  EAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A      +      P + T+N L++      D   A+ +L  ++  G K D   Y+ LI
Sbjct: 237 DALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLI 296

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           T   K+ ++D   +V  +M   G  P+  TY  LI+G  KAG +  A   +  M+SK   
Sbjct: 297 TGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCN 356

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V ++ LITA G++  V+ A  +  EM  E   + PD  T  +++     AGQVD A 
Sbjct: 357 PDVVTYSTLITALGKAARVESACVLFEEM--ESVGIQPDLFTYCSIITVLGKAGQVDDAD 414

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            ++  +    +      Y   +N   + G ++ A  +++DM + G++PD     AL+   
Sbjct: 415 RLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGL 474

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               +V+ A  +L+E   QG +   + +   +   ++  N  +A EL +   S  L P  
Sbjct: 475 SKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGA 534

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           S+ NALI AL    ++ +    L D+K  G  P+ ++YS L+ A  +   ++    LL +
Sbjct: 535 SSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEE 594

Query: 435 AKEDGV 440
             + G+
Sbjct: 595 MSKRGL 600



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 188/386 (48%), Gaps = 7/386 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + GR+ + ++LL++M+ +G+      Y+A      K    + EA+     +      P
Sbjct: 229 LGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLV-EAYNLLDEMKRNGCKP 287

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T++ L++    +   + A QVL+ +++ G   D   Y TLI    K+G ++    +F
Sbjct: 288 DVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLF 347

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M + G  P+V TY  LI    KA +V  A   +  M S  ++PD   + ++IT  G++
Sbjct: 348 DRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKA 407

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G VD A  + +EM  +   + PD IT  A + +    G+   AR++++ + +  +     
Sbjct: 408 GQVDDADRLFSEMRGK--GLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVA 465

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   +   S+T + + AC +  ++ ++G   D +     ++     G V+ A E+LQ A
Sbjct: 466 TYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFA 525

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            ++G+  G  SY++L+ A + A    +A    E +K    KP + + ++LI+AL    Q+
Sbjct: 526 NSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQI 585

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILL 416
               E+L +M   GL  +  +YS L+
Sbjct: 586 DTAFELLEEMSKRGLKLSPRSYSNLV 611



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 166/364 (45%), Gaps = 11/364 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G + E  +LL++M+R G       Y      + K+ + + EA +  K 
Sbjct: 256 TYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQ-LDEACQVLKK 314

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+N L++    +     A ++   ++  G   D   Y+TLIT   K+ +
Sbjct: 315 MEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAAR 374

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           V++   +F EM + GI+P++ TY ++I    KAGQV  A   +  MR K + PD + +NA
Sbjct: 375 VESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNA 434

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
            + + G+ G    A  +  +M      + PD  T  AL+   +   +VD A  + K + +
Sbjct: 435 FLNSLGRGGRFKEARKIFEDMKE--SGLLPDVATYDALLLGLSKTKEVDDACGLLKELIE 492

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                    +   +   +  G+ + A  +      KG+ P     +ALID    AG+V  
Sbjct: 493 QGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSE 552

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           AF  L++ K QG    I+SYSSL+ A         A EL E M    LK +  + + L+ 
Sbjct: 553 AFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVR 612

Query: 383 ALCD 386
            L D
Sbjct: 613 KLQD 616



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 5/184 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L R GR  E   + EDM+  GLL     Y A    + K+ K + +A    K +     
Sbjct: 437 NSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKT-KEVDDACGLLKELIEQGC 495

Query: 93  S----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +     F+  + +  S  + + A ++L+     GL      Y  LI   AK+G+V   F 
Sbjct: 496 AFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFN 555

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              ++   G +P++ +Y +LI    + GQ+  AF     M  + +K     ++ L+    
Sbjct: 556 TLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLVRKLQ 615

Query: 209 QSGA 212
             GA
Sbjct: 616 DWGA 619


>gi|298705285|emb|CBJ48975.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 674

 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 232/522 (44%), Gaps = 65/522 (12%)

Query: 69  NVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKA 125
           +V  +  A +E   +   VP   P + ++N +++ CA++K  + A  + R + +E G++ 
Sbjct: 84  SVTSTSAAEEEKEEWPLAVPAVEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRP 143

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           +   Y  LI+ CAK G  +       +M  +G+ PN   Y  +I  C ++ Q  KA    
Sbjct: 144 NVFTYGALISACAKRGNWEDSVNYLEQMRQSGLAPNAVIYSTVISACERSDQWQKAVKLL 203

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             MR   + P  V +N +I+ACG+SG    A  +L EM+    P  P  +T  + M AC 
Sbjct: 204 RTMRRDGILPVTVTYNTVISACGKSGQWSLAVSLLDEMSDMGCP--PGPVTFASAMLACE 261

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            A Q      +   + +  +      YT AI+   Q G W       D+M   GV  D V
Sbjct: 262 RARQWHHVLRIMDQMQEDEVWVDKYAYTTAIHAAGQLGKWARCVRYLDEMDSNGVAKDVV 321

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM------------------- 346
            +S  I      G+   A ++L++  + G++  +I+Y+SLM                   
Sbjct: 322 TVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQHERAIKILDLM 381

Query: 347 ----------------GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
                            AC++AK W++AL L + M+   + P   + N  I A  D  QL
Sbjct: 382 RSKGVMPNVRTYSVAIAACADAKEWRRALALLKEMEREGVSPNEISYNTAIRACGDAGQL 441

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            + ++++ +M+S G+  + +TY   + AC+R  D ++ L LL+  + + + PN +++  I
Sbjct: 442 SEALDLMDEMESRGVKASVVTYGTAVAACQRAADWKMALELLAAMRREQIEPNEIVYGGI 501

Query: 451 IGMC------SRRYEKARTLNEHVLSFN-------------SGRPQI-----ENKWTSLA 486
           I  C      S+    A  + E +  FN             S  P +     E +W   A
Sbjct: 502 IKACCAAGQASKALVDADQIEEAIQLFNKLQARRNCSVTIHSYTPLVDALTRELRWQE-A 560

Query: 487 LMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
           +M+++E      +PTV+  + V+   +     D+  RL++++
Sbjct: 561 IMLFQEMEDRKIMPTVQCYTSVVRACERSGQYDVALRLLDDM 602



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 175/417 (41%), Gaps = 57/417 (13%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R  +  + + LL  M R G+L +   Y+    + C        A      + +    P  
Sbjct: 192 RSDQWQKAVKLLRTMRRDGILPVTVTYNT-VISACGKSGQWSLAVSLLDEMSDMGCPPGP 250

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI------------------ 134
            TF   M  C  ++      +++  +QE  +  D   YTT I                  
Sbjct: 251 VTFASAMLACERARQWHHVLRIMDQMQEDEVWVDKYAYTTAIHAAGQLGKWARCVRYLDE 310

Query: 135 -----------------TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
                            + CA  G+     ++  +M++ G+ PNV TY +L+    + GQ
Sbjct: 311 MDSNGVAKDVVTVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQ 370

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
             +A     +MRSK V P+   ++  I AC  +    RA  +L EM  E   V P+ I+ 
Sbjct: 371 HERAIKILDLMRSKGVMPNVRTYSVAIAACADAKEWRRALALLKEMERE--GVSPNEISY 428

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
              ++AC +AGQ+  A ++   +    +K +   Y  A+  C +  DW+ A  +   M +
Sbjct: 429 NTAIRACGDAGQLSEALDLMDEMESRGVKASVVTYGTAVAACQRAADWKMALELLAAMRR 488

Query: 298 KGVIPDEVFLSALIDF---AGHAGK-------VEAAFEI---LQEAKNQGISVGIISYSS 344
           + + P+E+    +I     AG A K       +E A ++   LQ  +N   SV I SY+ 
Sbjct: 489 EQIEPNEIVYGGIIKACCAAGQASKALVDADQIEEAIQLFNKLQARRN--CSVTIHSYTP 546

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           L+ A +    WQ+A+ L++ M+  K+ PTV    +++ A     Q    + +L DM+
Sbjct: 547 LVDALTRELRWQEAIMLFQEMEDRKIMPTVQCYTSVVRACERSGQYDVALRLLDDMR 603



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 141/345 (40%), Gaps = 68/345 (19%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
            YA+  +  +H+  +L   G+ + C+  L++M+  G+   D V  +   + C  +    +
Sbjct: 285 KYAYTTA--IHAAGQL---GKWARCVRYLDEMDSNGVAK-DVVTVSVAISACADKGQWAQ 338

Query: 80  AFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           A +  +      L PN  + T+  LM V       E A ++L L++  G+  + + Y+  
Sbjct: 339 AEKLLEDMLDDGLTPN--VITYTSLMVVLRRGGQHERAIKILDLMRSKGVMPNVRTYSVA 396

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I  CA + +      +  EM   G+ PN  +Y   I  C  AGQ+++A      M S+ V
Sbjct: 397 IAACADAKEWRRALALLKEMEREGVSPNEISYNTAIRACGDAGQLSEALDLMDEMESRGV 456

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           K   V +   + AC ++     A ++LA M  E   ++P+ I  G ++KAC  AGQ  +A
Sbjct: 457 KASVVTYGTAVAACQRAADWKMALELLAAMRRE--QIEPNEIVYGGIIKACCAAGQASKA 514

Query: 254 --------------------REVYKMIHKYN--------------------------IKG 267
                               R     IH Y                           I  
Sbjct: 515 LVDADQIEEAIQLFNKLQARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQEMEDRKIMP 574

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV------IPDEVF 306
           T + YT  +  C ++G ++ A  + DDM KK +      I DE+F
Sbjct: 575 TVQCYTSVVRACERSGQYDVALRLLDDMRKKRMRFYDIGILDELF 619


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 172/354 (48%), Gaps = 10/354 (2%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A     L +E G+  D   Y+ L++  A+SG+ + +  +   M + G+ P+   +GA ++
Sbjct: 53  ALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVN 112

Query: 171 GCAKAGQVAKAFGAY--------GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            CAK GQ  +A            G M +  + P+   F++ + ACG +G  +RA  +L +
Sbjct: 113 ACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQ 172

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  E  P  P+  T  A + AC  AGQ   A  + + +   N     + YT AI+ C + 
Sbjct: 173 MAEEGVP--PNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKA 230

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G+W  A  +  +M +KGV P+ +  ++ I   G+ G+ + A  +L++  + G+   + SY
Sbjct: 231 GEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSY 290

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           ++ + AC +   W +AL ++E M+S  ++    +  A I A   G      + +L +M+ 
Sbjct: 291 TAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRD 350

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            G+ P   ++S  + AC +       + LL + +E GV PN V F   I  C R
Sbjct: 351 EGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGR 404



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 204/436 (46%), Gaps = 29/436 (6%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----------- 73
           +++Y+ L+    R GR  E + LL+ M  +G+   D        N C             
Sbjct: 69  VYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAP-DHFAFGAAVNACAKGGQWERAVALL 127

Query: 74  -QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            Q+A++       +  +P ++TF+  ++ C ++   E A  +L  + E G+  +   ++ 
Sbjct: 128 DQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSA 187

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
            ++ C K+G+      +   M  A   PNV TY A ID C KAG+   A G    MR K 
Sbjct: 188 AVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKG 247

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           V P+ + FN+ I+A G  G    A ++L +M +    V P+  +  A + AC +  +  R
Sbjct: 248 VAPNVITFNSAISALGNGGQWQEALNLLRDMPS--MGVQPNMWSYTAAVTACGDNNRWAR 305

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A  V++ +    I+G    +T AI+ C+Q G WE A ++ D+M  +G+ P     S  I 
Sbjct: 306 ALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAIS 365

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
             G   +   A  +L+E +  G+S   +S+++ + AC  A  W+ AL L + M S  +  
Sbjct: 366 ACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPR 425

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDM-----KSLG-LCP----NTITYSILLVACERK 422
              T NA+I A   G +  + + VL +M     K+ G + P    + ++YS  + AC R 
Sbjct: 426 GTITYNAVIAACGKGKEWARAVSVLREMLAGQAKTDGDMAPVPMADVVSYSAAIDACVRA 485

Query: 423 DDVEVGLMLLSQAKED 438
            + E  + L+   + D
Sbjct: 486 GEWEEAISLVELLRRD 501



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 181/397 (45%), Gaps = 22/397 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAF-----QVLRLVQE---AGLKADCKLYTTLITTCAKSG 141
           P    F   ++ CA     E A      + LRL+ E    GL  +   +++ +  C  +G
Sbjct: 102 PDHFAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAG 161

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           + +    +  +M   G+ PN  T+ A +  C KAGQ   A      MR+ N  P+   + 
Sbjct: 162 QWERALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYT 221

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           A I ACG++G    A  +LAEM  +   V P+ IT  + + A  N GQ   A  + + + 
Sbjct: 222 AAIDACGKAGEWRLAQGLLAEMREK--GVAPNVITFNSAISALGNGGQWQEALNLLRDMP 279

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              ++     YT A+  C     W  A +V++ M  +G+  DEV  +A ID     G  E
Sbjct: 280 SMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWE 339

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +L E +++GI   + S+S+ + AC   + W +A+ L   M+ + + P   + NA I
Sbjct: 340 MALALLDEMRDEGIPPTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAI 399

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL-----MLLSQAK 436
            A     Q    + +L  M S G+   TITY+ ++ AC +  +    +     ML  QAK
Sbjct: 400 DACGRAGQWRAALSLLDKMSSAGVPRGTITYNAVIAACGKGKEWARAVSVLREMLAGQAK 459

Query: 437 EDG-----VIPNLVMFKCIIGMCSR--RYEKARTLNE 466
            DG      + ++V +   I  C R   +E+A +L E
Sbjct: 460 TDGDMAPVPMADVVSYSAAIDACVRAGEWEEAISLVE 496



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 178/380 (46%), Gaps = 10/380 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--------A 145
           T+++LMS  A S   E    +L +++  G+  D   +   +  CAK G+ +         
Sbjct: 71  TYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQR 130

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              +  EM   G+ PNV T+ + +  C  AGQ  +A G    M  + V P+   F+A ++
Sbjct: 131 ALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAAVS 190

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           ACG++G    A  +L  M A   P  P+  T  A + AC  AG+   A+ +   + +  +
Sbjct: 191 ACGKAGQWRPALTILRRMRAANCP--PNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGV 248

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 +  AI+     G W+ A ++  DM   GV P+    +A +   G   +   A  
Sbjct: 249 APNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALA 308

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + ++ +++GI    +S+++ + AC+    W+ AL L + M+   + PTV + +  I+A  
Sbjct: 309 VHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACG 368

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
            G Q  + + +L +M+ +G+ PN ++++  + AC R       L LL +    GV    +
Sbjct: 369 KGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPRGTI 428

Query: 446 MFKCIIGMCSRRYEKARTLN 465
            +  +I  C +  E AR ++
Sbjct: 429 TYNAVIAACGKGKEWARAVS 448



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 156/316 (49%), Gaps = 10/316 (3%)

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G+  +V+TY  L+   A++G+  +      +MRS+ V PD   F A + AC + G  +RA
Sbjct: 64  GVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERA 123

Query: 217 --------FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                     +L EM A    + P+  T  + + AC NAGQ +RA  +   + +  +   
Sbjct: 124 VALLDQRALRLLGEMAA--VGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPN 181

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              ++ A++ C + G W  A ++   M      P+    +A ID  G AG+   A  +L 
Sbjct: 182 EFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLA 241

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E + +G++  +I+++S + A  N   WQ+AL L   M S+ ++P + +  A +TA  D +
Sbjct: 242 EMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNN 301

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  + + V   M+S G+  + ++++  + AC +    E+ L LL + +++G+ P +  F 
Sbjct: 302 RWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFS 361

Query: 449 CIIGMCSRRYEKARTL 464
             I  C +  +  R +
Sbjct: 362 TAISACGKGQQWGRAV 377



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 164/416 (39%), Gaps = 61/416 (14%)

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           + GQ  +A  A  + R   V  D   ++ L++A  +SG  +    +L  M +E   V PD
Sbjct: 46  RKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSE--GVAPD 103

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
           H   GA                                   A+N C++ G WE A ++ D
Sbjct: 104 HFAFGA-----------------------------------AVNACAKGGQWERAVALLD 128

Query: 294 --------DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
                   +M   G+ P+    S+ +   G+AG+ E A  +L +   +G+     ++S+ 
Sbjct: 129 QRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSAA 188

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           + AC  A  W+ AL +   M++    P V T  A I A     +      +L++M+  G+
Sbjct: 189 VSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGV 248

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
            PN IT++  + A       +  L LL      GV PN+  +   +  C      AR L 
Sbjct: 249 APNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALA 308

Query: 466 EHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVL---G 510
            H    + G    E  +T+            +AL +  E    G  PTV   S  +   G
Sbjct: 309 VHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACG 368

Query: 511 CLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGI 566
             Q    A    R +E +GVS + +  +         G++   A SLL++ +S G+
Sbjct: 369 KGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRA-ALSLLDKMSSAGV 423



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 131/319 (41%), Gaps = 36/319 (11%)

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           + G W+ A +  +   + GV+ D    S L+     +G+ E    +L   +++G++    
Sbjct: 46  RKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHF 105

Query: 341 SYSSLMGACSNAKNW--------QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           ++ + + AC+    W        Q+AL L   M ++ L P V+T ++ + A  +  Q  +
Sbjct: 106 AFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWER 165

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            + +L  M   G+ PN  T+S  + AC +       L +L + +     PN+  +   I 
Sbjct: 166 ALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAID 225

Query: 453 MCSRRYE-----------KARTLNEHVLSFNSGRPQIEN--KWTSLALMVYREAIVAGTI 499
            C +  E           + + +  +V++FNS    + N  +W   AL + R+    G  
Sbjct: 226 ACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQE-ALNLLRDMPSMGVQ 284

Query: 500 PTV-EVVSKVLGC-------LQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 551
           P +    + V  C         L  +  +R R     G+  D +  +         G ++
Sbjct: 285 PNMWSYTAAVTACGDNNRWARALAVHEQMRSR-----GIRGDEVSFTAAIDACAQGGAWE 339

Query: 552 PRAFSLLEEAASFGIVPCV 570
             A +LL+E    GI P V
Sbjct: 340 -MALALLDEMRDEGIPPTV 357



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 109/270 (40%), Gaps = 45/270 (16%)

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
           G  G+ + A      A+  G+   + +YS LM A + +  W++ L L + M+S  + P  
Sbjct: 45  GRKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDH 104

Query: 375 STMNALITALCDGDQLP--------KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
               A + A   G Q          + + +L +M ++GL PN  T+S  + AC      E
Sbjct: 105 FAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWE 164

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLA 486
             L LL Q  E+GV PN   F   +  C +                  RP         A
Sbjct: 165 RALGLLDQMAEEGVPPNEFTFSAAVSACGK--------------AGQWRP---------A 201

Query: 487 LMVYREAIVAGTIPTVEVVSKVL------GCLQLPYN--ADIRERLVENLGVSADALKRS 538
           L + R    A   P V+  +  +      G  +L     A++RE+     GV+ + +  +
Sbjct: 202 LTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREK-----GVAPNVITFN 256

Query: 539 NLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
           +  S +   G++   A +LL +  S G+ P
Sbjct: 257 SAISALGNGGQWQ-EALNLLRDMPSMGVQP 285


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 184/356 (51%), Gaps = 2/356 (0%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           ++  A Q+L+ ++   +  D  +Y  +I +  K   V   ++++ EM+   I P+V T+ 
Sbjct: 179 ETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFN 238

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           +LI G    GQ+ +AFG +  M  KN+ PD   F+ L+ A  + G + RA ++LA M  +
Sbjct: 239 SLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQ 298

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V PD +T  +LM       +V++A+ V+  + +  +      Y I IN   +    +
Sbjct: 299 --GVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVD 356

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A S++ +M  KG+ PD V  ++LID     G++  A++++ E  N GI   I++Y+SL+
Sbjct: 357 EALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLI 416

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                  +  KA+ L + +K   ++P++ T N LI  LC G +L    +V  D+   G  
Sbjct: 417 DVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYS 476

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
            N  TY+I++    ++       +LLS+ + +G+IP+ V ++ II    R+ E  +
Sbjct: 477 VNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEK 532



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/414 (21%), Positives = 179/414 (43%), Gaps = 46/414 (11%)

Query: 82  RFFKLVPNPTLSTFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           R  ++ P P++  FN ++   V A++     A  +   ++  G+      +  L+     
Sbjct: 47  RMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCH 106

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHT----------------------------------- 164
            G++   F +F +++  G  P   T                                   
Sbjct: 107 LGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVS 166

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y  LI+G  K G+   A      +  K V  D V++N +I +  +  AV  A+ + +EM 
Sbjct: 167 YRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMI 226

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQ 281
            +   + PD +T  +L+      GQ+   +E + + H+  +K   P+VYT  I ++   +
Sbjct: 227 TK--RISPDVVTFNSLILGFCVVGQL---KEAFGLFHEMVLKNINPDVYTFSILVDALCK 281

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
            G+   A ++   M K+GVIPD V  S+L+D      +V  A  +       G++    S
Sbjct: 282 DGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHS 341

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           Y+ ++      K   +AL L++ M    + P   T N+LI  LC   ++    +++ +M 
Sbjct: 342 YNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMH 401

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           + G+  + +TY+ L+    +   ++  + L+ + K+ G+ P++  +  +I G+C
Sbjct: 402 NNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLC 455



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 148/337 (43%), Gaps = 7/337 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L +   +S+   L  +M  K +      +++     C   + +KEAF  F  +     
Sbjct: 207 NSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQ-LKEAFGLFHEMVLKNI 265

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP + TF++L+       +   A  +L ++ + G+  D   Y++L+       +V+    
Sbjct: 266 NPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKH 325

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF  M   G+ P+ H+Y  +I+G  K   V +A   +  M  K + PD V +N+LI    
Sbjct: 326 VFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLC 385

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  A+ ++ EM+    P D   +T  +L+        +D+A  + K I    I+ +
Sbjct: 386 KLGRISYAWQLVDEMHNNGIPADI--LTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPS 443

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I I+   + G  + A  V+ D+  KG   +    + +I+     G    A  +L 
Sbjct: 444 MYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLS 503

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           + +N GI    ++Y +++ A       +KA +L   M
Sbjct: 504 KMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREM 540



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 170/392 (43%), Gaps = 22/392 (5%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P  V FN ++ +  ++        +      E+  + P  +T   L+    + G++  A 
Sbjct: 55  PSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAF 114

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            ++  I K     T   +   IN     G  + A   +D +   G   D+V    LI+  
Sbjct: 115 SIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGL 174

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G+  AA ++L++ + + ++  ++ Y+ ++ +    K    A +LY  M + ++ P V
Sbjct: 175 CKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDV 234

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N+LI   C   QL +   +  +M    + P+  T+SIL+ A  +  ++     +L+ 
Sbjct: 235 VTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAV 294

Query: 435 AKEDGVIPNLVMFK------CIIGMCSRRYEKARTLNE-----HVLSFN---SGRPQIEN 480
             + GVIP++V +       C++   ++      T++      H  S+N   +G  +I  
Sbjct: 295 MMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKI-- 352

Query: 481 KWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQL---PYNADIRERLVENLGVSADALK 536
           K    AL +++E    G  P TV   S + G  +L    Y   + + +  N G+ AD L 
Sbjct: 353 KMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNN-GIPADILT 411

Query: 537 RSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
            ++L  ++      D +A +L+++    GI P
Sbjct: 412 YNSLIDVLCKNHHID-KAIALVKKIKDQGIQP 442


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 181/370 (48%), Gaps = 4/370 (1%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           ++++S        E A  V    Q+AG   +   Y+ +++   +SG+     +VF  M  
Sbjct: 204 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 263

Query: 156 AGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           AG +PN+ TY  +ID C K G  + +A   +  M+ + V+PDR+ FN+LI  C + G  +
Sbjct: 264 AGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWE 323

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            +  V AEM  +   ++ D  T   L+ A    GQ++ A  +   +   NI      Y+ 
Sbjct: 324 DSQRVFAEM--QRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYST 381

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   + G +E A S+Y DM + GV PD V  + LID     G+ + A    ++ +  G
Sbjct: 382 MIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVG 441

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +   +++Y++L+ A      ++ A  L++ MK   L P V T +ALI +           
Sbjct: 442 LKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVS 501

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
            V ++ K  GL P+ + YS L+ +C +   VE  ++LL +  + G+ PN+V +  +I   
Sbjct: 502 NVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAY 561

Query: 455 SRRYEKARTL 464
             RY +A  L
Sbjct: 562 G-RYGQADKL 570



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 208/457 (45%), Gaps = 28/457 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R G++   +D+    ++ G  +    Y A      +S +  +EA + F+ +      P
Sbjct: 210 LGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRC-REALKVFQAMKKAGCKP 268

Query: 91  TLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            L T+N ++  C     D + A  +   +Q+ G++ D   + +LI  C++ G  +    V
Sbjct: 269 NLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRV 328

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   GIE ++ T+  LID   K GQ+  A      MR KN+ P+ V ++ +I   G+
Sbjct: 329 FAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGK 388

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  + A  +  +M      V PD ++   L+   A  G+ D A    K + +  +K   
Sbjct: 389 LGCFEEAISLYHDMKES--GVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADV 446

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I+   + G ++ A  ++D M  +G++P+ +  SALID    AG  +    +  E
Sbjct: 447 VTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTE 506

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G+   ++ YSSL+ +C      + A+ L + M    ++P + T N+LI A     Q
Sbjct: 507 FKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQ 566

Query: 390 LPKTMEVLSDMKSLGLCPNTIT----YSILLV----ACERKDDVEVGLM----LLSQAKE 437
             K   V ++M      PN++      S+ +V      ++      G++    +  + ++
Sbjct: 567 ADKLEAVKANM------PNSVQKIGERSMEVVRKPPPSQQNASDHTGVLAAVSVFHEMQQ 620

Query: 438 DGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472
            G+ PN+V F  I+  CSR    ++A  L E +  F+
Sbjct: 621 FGLKPNVVTFSAILNACSRCASLQEASVLLEQMRFFD 657



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 141/323 (43%), Gaps = 27/323 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN LI    + GR  + +   +DMER GL   D V +    +    Q   K+A   F  
Sbjct: 413 SYNTLIDIYAKLGRFDDALIACKDMERVGL-KADVVTYNALIDAYGKQGKYKDAACLFDK 471

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN  + T++ L+   + +   +    V    + AGLK D  LY++LI +C K 
Sbjct: 472 MKGEGLVPN--VLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKC 529

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PDRVV 199
           G V+    +  EM  AGI+PN+ TY +LID   + GQ  K       M +   K  +R +
Sbjct: 530 GLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSM 589

Query: 200 FNALITACGQSGAVDR-----AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
                    Q  A D      A  V  EM  +   + P+ +T  A++ AC+    +  A 
Sbjct: 590 EVVRKPPPSQQNASDHTGVLAAVSVFHEM--QQFGLKPNVVTFSAILNACSRCASLQEAS 647

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALID 312
            + + +  ++      VY IA        +  W  A  ++D++++        F +AL D
Sbjct: 648 VLLEQMRFFD----GWVYGIAHGLLMGLREQVWVEAQRLFDEISRMDYATGAAFYNALTD 703

Query: 313 FAGHAGKVEAAFEILQEAKNQGI 335
              H G+ + A E++  AK + +
Sbjct: 704 VLWHFGQRQGAQEVVVAAKRRQV 726



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 79/186 (42%), Gaps = 49/186 (26%)

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVSTM------------------ 377
           VG+  +  L+    N   W++AL+ YE M + + L+   S +                  
Sbjct: 161 VGLEDFPYLLRELGNRGEWERALQGYEWMVQQVHLRSEWSKLASIMISTLGRLGKVEIAL 220

Query: 378 ------------------NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
                             +A+++A     +  + ++V   MK  G  PN ITY+ ++ AC
Sbjct: 221 DVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDAC 280

Query: 420 ERKD-DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKA---------RTLNEH 467
            +   D++  L +  + +++GV P+ + F  +I +CSR   +E +         R + + 
Sbjct: 281 GKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQD 340

Query: 468 VLSFNS 473
           + +FN+
Sbjct: 341 IFTFNT 346


>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 903

 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 122/516 (23%), Positives = 222/516 (43%), Gaps = 45/516 (8%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAFRFFKLVP-NPTLS 93
           R G+  E   LL +M+  G+     VY A F  F      +A     R     P  P + 
Sbjct: 242 RCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVF 301

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            +N+ +  C    + E A  +L  ++E  G++ D   Y  ++  C K+G+ +   E+F E
Sbjct: 302 NYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQGEKAIEIFRE 361

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   GI+P+V ++   I  C   G   +A   +  M    V+P+ +  NA+++AC  +G 
Sbjct: 362 MSEVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMSACIAAGQ 421

Query: 213 VDRAFDVLAEMNAEVHPVD--------------PDHITIGALMKACANAGQVDRAREVYK 258
            + A D   E+       +               D  +    + AC    Q  RA  + +
Sbjct: 422 WEEALDFFTEVVDGSGAANGGGGGGPPPDPVEVADACSYNTALSACEVGEQWGRALSLLR 481

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + K  +K     Y   I+ C + G+ + A ++  +M ++G++PD +  ++ I    ++G
Sbjct: 482 DMPKRGVKPVVISYNTVISACGKCGEGDQALALLREMPERGLMPDVITFNSAIAALSNSG 541

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           + + A  +++E    G++   I+YSS +   ++A  W++AL L   M+   + PTV    
Sbjct: 542 RPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGAGVSPTVICYT 601

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           A I A  +  +  + + +L +M + G+ PN  +YS  + AC +    E GL LL++    
Sbjct: 602 AAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSATISACGKDGRWEQGLALLNEMPAL 661

Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 498
           G+ PN   +   I  C                       I  +W   A+  +R  I +G 
Sbjct: 662 GLTPNEFCYTAAITGCG----------------------IGGQWER-AVATFRSMIASGI 698

Query: 499 IPTV----EVVSKVLGCLQLPYNADIRERLVENLGV 530
            PTV      VS +  C ++    ++   + E  G+
Sbjct: 699 QPTVVGYTSAVSALAHCGEVDLALELLSEMKEEAGI 734



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 202/422 (47%), Gaps = 16/422 (3%)

Query: 31  SYNRLIRQGRISE----CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN  +    + E     + LL DM ++G+  +   Y+    + C       +A    + 
Sbjct: 459 SYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVISYNT-VISACGKCGEGDQALALLRE 517

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +P     P + TFN  ++  ++S   + A +++R +  AG+ AD   Y++ +T  A +G+
Sbjct: 518 MPERGLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGR 577

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            +    +  EM  AG+ P V  Y A I  C +AG+  +A      M +  V P+   ++A
Sbjct: 578 WEQALSLLREMQGAGVSPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSA 637

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
            I+ACG+ G  ++   +L EM A    + P+     A +  C   GQ +RA   ++ +  
Sbjct: 638 TISACGKDGRWEQGLALLNEMPA--LGLTPNEFCYTAAITGCGIGGQWERAVATFRSMIA 695

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVE 321
             I+ T   YT A++  +  G+ + A  +  +M ++ G+ P+E   +A+I   G+ G+  
Sbjct: 696 SGIQPTVVGYTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGH 755

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
              ++ ++  + GI+  +  Y S + A     NW +A  L   M++  + PTVS  NA I
Sbjct: 756 LVAQVQRDMASAGITPRLTGYLSAIRASGECGNWSEATSLLGEMEAAGVPPTVSCYNAAI 815

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER--KDDVEVGLM--LLSQAKE 437
           TA     +  + +++L +M   GL  ++ T S  + AC++  +     GL+  +L  A+E
Sbjct: 816 TACGKSGKWQEALDLLDEMPGKGLVRDSGTLSAAISACQKAGRGVKAAGLVEEMLEMARE 875

Query: 438 DG 439
            G
Sbjct: 876 KG 877



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 180/419 (42%), Gaps = 9/419 (2%)

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVL 115
           D   +    + C+  +    A    + +P     P + ++N ++S C    + + A  +L
Sbjct: 456 DACSYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVISYNTVISACGKCGEGDQALALL 515

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           R + E GL  D   + + I   + SG+ D    +  EM  AG+  +  TY + + G A A
Sbjct: 516 REMPERGLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHA 575

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G+  +A      M+   V P  + + A I ACG++G  D A  +L EM      V P+  
Sbjct: 576 GRWEQALSLLREMQGAGVSPTVICYTAAIRACGEAGKGDEALLLLREM--PTAGVTPNLF 633

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           +  A + AC   G+ ++   +   +    +      YT AI  C   G WE A + +  M
Sbjct: 634 SYSATISACGKDGRWEQGLALLNEMPALGLTPNEFCYTAAITGCGIGGQWERAVATFRSM 693

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKN 354
              G+ P  V  ++ +    H G+V+ A E+L E K + GI     +Y++++ AC N   
Sbjct: 694 IASGIQPTVVGYTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQ 753

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
                ++   M S  + P ++   + I A  +     +   +L +M++ G+ P    Y+ 
Sbjct: 754 GHLVAQVQRDMASAGITPRLTGYLSAIRASGECGNWSEATSLLGEMEAAGVPPTVSCYNA 813

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSF 471
            + AC +    +  L LL +    G++ +       I  C +  R  KA  L E +L  
Sbjct: 814 AITACGKSGKWQEALDLLDEMPGKGLVRDSGTLSAAISACQKAGRGVKAAGLVEEMLEM 872



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 122/497 (24%), Positives = 206/497 (41%), Gaps = 80/497 (16%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y+  I+  AK  +     ++   M   G  PN +   A +D C KAG+V +A G     
Sbjct: 126 VYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDA 185

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           R+  ++ D V +N  I AC   G  + A  ++ EM AE + + P+HIT  A +K C   G
Sbjct: 186 RASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAE-YGIKPNHITYQAAIKVCGRCG 244

Query: 249 QVDRA---------------REVY--------------------KMIHKYNIKGTPEVYT 273
           + D A                 VY                    + IH + +K     Y 
Sbjct: 245 KADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYN 304

Query: 274 IAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +AI  C+  G+WE A  +   M +  GV PD V  + ++   G AG+ E A EI +E   
Sbjct: 305 LAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQGEKAIEIFREMSE 364

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            GI   +IS+++ + AC +    ++AL ++  M+   ++P + T NA+++A     Q  +
Sbjct: 365 VGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMSACIAAGQWEE 424

Query: 393 TMEVLSDMKSLGL----------------CPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            ++  +++                       +  +Y+  L ACE  +     L LL    
Sbjct: 425 ALDFFTEVVDGSGAANGGGGGGPPPDPVEVADACSYNTALSACEVGEQWGRALSLLRDMP 484

Query: 437 EDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 496
           + GV P ++ +  +I  C +  E  +                       AL + RE    
Sbjct: 485 KRGVKPVVISYNTVISACGKCGEGDQ-----------------------ALALLREMPER 521

Query: 497 GTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGEYDPR 553
           G +P V   +  +  L      D   RL+  +   GV+ADA+  S+  + +   G ++ +
Sbjct: 522 GLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWE-Q 580

Query: 554 AFSLLEEAASFGIVPCV 570
           A SLL E    G+ P V
Sbjct: 581 ALSLLREMQGAGVSPTV 597



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 120/505 (23%), Positives = 218/505 (43%), Gaps = 39/505 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           +R+ +  R  E +D+L  M   G +      +A   + C     ++EA    +      +
Sbjct: 132 SRMAKCFRWGEALDILARMAELGAMPNSYCVNA-ALDACGKAGRVQEALGLMRDARASGI 190

Query: 93  S----TFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMF 147
                ++N  +  C +  D E A  ++R ++ E G+K +   Y   I  C + GK D   
Sbjct: 191 ELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAA 250

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +  EM + G+      Y A+ +   +      A      +    VKP+   +N  I  C
Sbjct: 251 SLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTC 310

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
              G  + A D+L  M  EV  V+PD +T   ++ AC  AGQ ++A E+++ + +  IK 
Sbjct: 311 TDCGEWEEALDLLHFMR-EVGGVEPDVVTYNIVVAACGKAGQGEKAIEIFREMSEVGIK- 368

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P+V  +T AI+ C   G  E A S++ +M + GV P+ +  +A++     AG+ E A +
Sbjct: 369 -PDVISFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMSACIAAGQWEEALD 427

Query: 326 ILQE---------------AKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIK 369
              E                    + V    SY++ + AC   + W +AL L   M    
Sbjct: 428 FFTEVVDGSGAANGGGGGGPPPDPVEVADACSYNTALSACEVGEQWGRALSLLRDMPKRG 487

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           +KP V + N +I+A     +  + + +L +M   GL P+ IT++  + A       +  +
Sbjct: 488 VKPVVISYNTVISACGKCGEGDQALALLREMPERGLMPDVITFNSAIAALSNSGRPDDAV 547

Query: 430 MLLSQAKEDGVIPNLVMF-KCIIGMC-SRRYEKARTL---------NEHVLSFNSG-RPQ 477
            L+ +    GV  + + +   + G+  + R+E+A +L         +  V+ + +  R  
Sbjct: 548 RLMREMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGAGVSPTVICYTAAIRAC 607

Query: 478 IENKWTSLALMVYREAIVAGTIPTV 502
            E      AL++ RE   AG  P +
Sbjct: 608 GEAGKGDEALLLLREMPTAGVTPNL 632



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 11/252 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  L SY+  I    + GR  + + LL +M   GL   +  Y A         +  +  
Sbjct: 628 VTPNLFSYSATISACGKDGRWEQGLALLNEMPALGLTPNEFCYTAAITGCGIGGQWERAV 687

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITT 136
             F  ++ +   PT+  +   +S  A   + + A ++L  + +EAG++ + + Y  +I  
Sbjct: 688 ATFRSMIASGIQPTVVGYTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILA 747

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
           C   G+   + +V  +M +AGI P +  Y + I    + G  ++A    G M +  V P 
Sbjct: 748 CGNGGQGHLVAQVQRDMASAGITPRLTGYLSAIRASGECGNWSEATSLLGEMEAAGVPPT 807

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-VDRARE 255
              +NA ITACG+SG    A D+L EM  +   +  D  T+ A + AC  AG+ V  A  
Sbjct: 808 VSCYNAAITACGKSGKWQEALDLLDEMPGK--GLVRDSGTLSAAISACQKAGRGVKAAGL 865

Query: 256 VYKMIHKYNIKG 267
           V +M+     KG
Sbjct: 866 VEEMLEMAREKG 877



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
           AK    +V    YS  +   +    W +AL++   M  +   P    +NA + A     +
Sbjct: 115 AKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGR 174

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFK 448
           + + + ++ D ++ G+  + ++Y+  + AC    D E+ L ++ + + E G+ PN + ++
Sbjct: 175 VQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQ 234

Query: 449 CIIGMCSR 456
             I +C R
Sbjct: 235 AAIKVCGR 242


>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
           CCMP2712]
          Length = 363

 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 168/346 (48%), Gaps = 14/346 (4%)

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS---------KNVK 194
           +A  EV   +   G+ P   +Y A +    + G+  +A   +  + S         ++++
Sbjct: 1   EAALEVLKSIEKEGLTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLR 60

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V F+  I+AC + G   RA ++  EM  E   ++P+  T  AL+ AC   GQV +A 
Sbjct: 61  PDTVTFSTAISACAKGGEWQRAMNMYHEM--EAQGIEPNEFTFAALITACEKGGQVSKAF 118

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           EV++ +    I G    +T AI+ C + GDW+ A  + ++M  KG+ P+    SA I   
Sbjct: 119 EVFERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISAC 178

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             A +   A  +L+   N+ I   II YS++M AC  A  W+ A  +++ MK   L P V
Sbjct: 179 EKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDV 238

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
              + LI A     +  + +EV   M+  G+ PN I Y+  + AC +  +    L LL +
Sbjct: 239 VAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLER 298

Query: 435 AKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI 478
            K D + P+ V +  +I   SR  +++   TL + +L  +  +P I
Sbjct: 299 MKADKLRPDAVAYNFVISALSRGGQWDAGLTLLQ-MLEEDEAQPNI 343



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 179/364 (49%), Gaps = 13/364 (3%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF---------HEMVNAGIE 159
           E A +VL+ +++ GL      Y   ++   ++G+      +F         +++    + 
Sbjct: 1   EAALEVLKSIEKEGLTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLR 60

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P+  T+   I  CAK G+  +A   Y  M ++ ++P+   F ALITAC + G V +AF+V
Sbjct: 61  PDTVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEV 120

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
              M A    +  +  T  A + +C   G   RA ++ + +    I+   + Y+ AI+ C
Sbjct: 121 FERMQA--RGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISAC 178

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            +  +   A  + + MT + + PD +  SA++   G AG  E A  I Q+ K +G++  +
Sbjct: 179 EKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDV 238

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++YS+L+ A   A  W +ALE+++ M+   ++P V      I A     +  +++ +L  
Sbjct: 239 VAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLER 298

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRR 457
           MK+  L P+ + Y+ ++ A  R    + GL LL   +ED   PN+  +  +I  C  + +
Sbjct: 299 MKADKLRPDAVAYNFVISALSRGGQWDAGLTLLQMLEEDEAQPNISTYCTVIKACGDNGQ 358

Query: 458 YEKA 461
           +EKA
Sbjct: 359 WEKA 362



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 173/388 (44%), Gaps = 51/388 (13%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-------------PT 91
           +++L+ +E++GL      Y+A    + ++ +  +EA   F  V +             P 
Sbjct: 4   LEVLKSIEKEGLTPTRVSYNAAMSALTRNGR-WREALSMFDSVFSQTERNKVAARSLRPD 62

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             TF+  +S CA   + + A  +   ++  G++ +   +  LIT C K G+V   FEVF 
Sbjct: 63  TVTFSTAISACAKGGEWQRAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFE 122

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   GI  NV+T+ A I  C K G   +A      M +K ++P+   ++A I+AC ++ 
Sbjct: 123 RMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAA 182

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
               A  +L  M  E   + PD I   A+M AC  AG                       
Sbjct: 183 EARPALGLLERMTNE--KIKPDIIVYSAVMAACGKAGL---------------------- 218

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
                        WE A  ++  M ++G+ PD V  S LI     AG+   A E+ Q  +
Sbjct: 219 -------------WEPAARIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLME 265

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+   +I+Y+  + AC+ A  W+++L L E MK+ KL+P     N +I+AL  G Q  
Sbjct: 266 KAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERMKADKLRPDAVAYNFVISALSRGGQWD 325

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVAC 419
             + +L  ++     PN  TY  ++ AC
Sbjct: 326 AGLTLLQMLEEDEAQPNISTYCTVIKAC 353



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 160/345 (46%), Gaps = 18/345 (5%)

Query: 31  SYNR----LIRQGRISECIDLLEDM----ERKGL----LDMDKVYHARFFNVCKSQKAIK 78
           SYN     L R GR  E + + + +    ER  +    L  D V  +   + C      +
Sbjct: 21  SYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLRPDTVTFSTAISACAKGGEWQ 80

Query: 79  EAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            A   +  +      P   TF  L++ C        AF+V   +Q  G+  +   +T  I
Sbjct: 81  RAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFERMQARGIVGNVYTFTAAI 140

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           ++C K G      ++  EM+  GI+PN+  Y A I  C KA +   A G    M ++ +K
Sbjct: 141 SSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEARPALGLLERMTNEKIK 200

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD +V++A++ ACG++G  + A  +  +M  E   + PD +    L++A   AG+  RA 
Sbjct: 201 PDIIVYSAVMAACGKAGLWEPAARIFQKMKRE--GLTPDVVAYSTLIQAYQRAGEWSRAL 258

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           EV++++ K  ++     YT AI  C++ G+W  +  + + M    + PD V  + +I   
Sbjct: 259 EVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLERMKADKLRPDAVAYNFVISAL 318

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
              G+ +A   +LQ  +       I +Y +++ AC +   W+KAL
Sbjct: 319 SRGGQWDAGLTLLQMLEEDEAQPNISTYCTVIKACGDNGQWEKAL 363


>gi|428179078|gb|EKX47950.1| hypothetical protein GUITHDRAFT_136922 [Guillardia theta CCMP2712]
          Length = 714

 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 193/410 (47%), Gaps = 46/410 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L+ V       + ++ +L  +++  +  D   Y+TLI+T AK+ K     E+
Sbjct: 269 PDIVTYNSLLGVYMEMGKWKESYDILFEIEDQHVITDVITYSTLISTFAKTRKYSLAIEM 328

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           + +M+   + PNV TY +LI  C +A   ++AF  +  M+++ + P+ V ++ +I +C  
Sbjct: 329 YEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASCRS 388

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
                 AFD+  EM  +  P  PD +T  AL+  C ++ Q ++A +V + +    I+   
Sbjct: 389 KDNWVTAFDLFLEMIRKEIP--PDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNI 446

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +Y+  ++ C Q G  + A  + D+  + G+ P+ +  +ALI     A  ++ AF +L+ 
Sbjct: 447 RMYSAVVHVCGQAGRLDDAFRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVLEL 506

Query: 330 AKNQGISVGIISYSSLMGACSNAKN----------------------------------- 354
            K   ++  +++++ L+G C    N                                   
Sbjct: 507 MKEDHVTPNLVTFNVLLGTCEVVGNSTCAFQVVGLLQEYGFRANLQTFNTLIKTCVRSHE 566

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM---------KSLGL 405
           WQKA E+Y  M+  +++P++ST NAL  A  +G    + ++V+ DM         +  G 
Sbjct: 567 WQKAFEVYSQMQLQRIRPSLSTFNALSMAAEEGGDWRRAIDVMVDMRIKTEKILIRMAGH 626

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
            P+   Y+ L+ AC +  + +    +    K  GV  N+V +  II + S
Sbjct: 627 TPSVQAYNSLISACVKSSNYQKAFDVYKGMKTSGVRANIVTYNLIISILS 676



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 191/400 (47%), Gaps = 41/400 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN LI    R    S+     +DM+ +G+   + V ++     C+S+     AF  F  
Sbjct: 343 TYNSLIFACLRANNFSQAFAFFDDMQAQGI-SPNVVTYSTMIASCRSKDNWVTAFDLFLE 401

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               ++ P+P   TF+ L+SVC  SK  E A  VL  +Q+AG++ + ++Y+ ++  C ++
Sbjct: 402 MIRKEIPPDPM--TFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQA 459

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G++D  F +  E    GI+PNV  + ALI  C  A  + +AF    +M+  +V P+ V F
Sbjct: 460 GRLDDAFRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVLELMKEDHVTPNLVTF 519

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N L+  C   G    AF V+  +    +    +  T   L+K C  + +  +A EVY  +
Sbjct: 520 NVLLGTCEVVGNSTCAFQVVGLLQE--YGFRANLQTFNTLIKTCVRSHEWQKAFEVYSQM 577

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               I+ +   +        + GDW  A  V  DM  K           LI  AGH   V
Sbjct: 578 QLQRIRPSLSTFNALSMAAEEGGDWRRAIDVMVDMRIKTE-------KILIRMAGHTPSV 630

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           +A                   Y+SL+ AC  + N+QKA ++Y+ MK+  ++  + T N +
Sbjct: 631 QA-------------------YNSLISACVKSSNYQKAFDVYKGMKTSGVRANIVTYNLI 671

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           I+ L    +L + ++V+++MK   + P++ T ++++ A +
Sbjct: 672 ISILSGQRKLSEVLKVINEMKQEEVTPDSETIALMIDAVQ 711



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 202/434 (46%), Gaps = 17/434 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L R G   E + +L  ME+ G+ + D V +    +  +    I+  F   K +    +P 
Sbjct: 96  LERMGDWREAVAILNIMEKDGV-EPDIVSYNTVLSALRHSPDIQNVFVMLKRMREKVSPD 154

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + +FN  ++ C    D E    +L ++ E  ++ D   ++TLI+ C + GK D  F +  
Sbjct: 155 IVSFNTALAACQRQCDWESGVAILEMMSEDQIERDVFTFSTLISLCDRCGKYDEAFALKE 214

Query: 152 EMVNAGIEPNVHTYGALIDGCA-----------KAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           EM    + PN++T+ ALI  C            +   +  A   +   ++  ++PD V +
Sbjct: 215 EMDAKNVSPNIYTFNALIAVCKNSLATSLMSRKRQNTLTIAQILFAEAKAAGLRPDIVTY 274

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N+L+    + G    ++D+L E+  E   V  D IT   L+   A   +   A E+Y+ +
Sbjct: 275 NSLLGVYMEMGKWKESYDILFEI--EDQHVITDVITYSTLISTFAKTRKYSLAIEMYEKM 332

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            +  +      Y   I  C +  ++  A + +DDM  +G+ P+ V  S +I         
Sbjct: 333 MERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASCRSKDNW 392

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             AF++  E   + I    +++S+L+  C ++K W++A+++ E M+   ++  +   +A+
Sbjct: 393 VTAFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAV 452

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +       +L     +L + K  G+ PN I ++ L+ AC+   D++    +L   KED V
Sbjct: 453 VHVCGQAGRLDDAFRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVLELMKEDHV 512

Query: 441 IPNLVMFKCIIGMC 454
            PNLV F  ++G C
Sbjct: 513 TPNLVTFNVLLGTC 526



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 173/405 (42%), Gaps = 47/405 (11%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------- 147
           FN  +       D   A  +L ++++ G++ D   Y T+++    S  +  +F       
Sbjct: 89  FNACIRALERMGDWREAVAILNIMEKDGVEPDIVSYNTVLSALRHSPDIQNVFVMLKRMR 148

Query: 148 ---------------------------EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
                                       +   M    IE +V T+  LI  C + G+  +
Sbjct: 149 EKVSPDIVSFNTALAACQRQCDWESGVAILEMMSEDQIERDVFTFSTLISLCDRCGKYDE 208

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-----------AFDVLAEMNAEVHP 229
           AF     M +KNV P+   FNALI  C  S A              A  + AE  A+   
Sbjct: 209 AFALKEEMDAKNVSPNIYTFNALIAVCKNSLATSLMSRKRQNTLTIAQILFAE--AKAAG 266

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           + PD +T  +L+      G+   + ++   I   ++      Y+  I+  ++T  +  A 
Sbjct: 267 LRPDIVTYNSLLGVYMEMGKWKESYDILFEIEDQHVITDVITYSTLISTFAKTRKYSLAI 326

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            +Y+ M ++ V+P+ +  ++LI     A     AF    + + QGIS  +++YS+++ +C
Sbjct: 327 EMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASC 386

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
            +  NW  A +L+  M   ++ P   T +AL++      Q  + M+VL  M+  G+  N 
Sbjct: 387 RSKDNWVTAFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNI 446

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
             YS ++  C +   ++    +L + K DG+ PN++MF  +I  C
Sbjct: 447 RMYSAVVHVCGQAGRLDDAFRILDECKRDGIKPNVIMFTALIHAC 491



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 112/239 (46%), Gaps = 28/239 (11%)

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEIL----QEAKNQGISVGIISYSSLMGACSNAKN 354
            ++ DE  +S LI   G   K     ++L    +E++ + I +  + +++ + A     +
Sbjct: 42  SMMWDEKLVSRLIVEIGRKHKKMMVADVLRWMREESERRKIKLSSLPFNACIRALERMGD 101

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           W++A+ +   M+   ++P + + N +++AL     +     +L  M+   + P+ ++++ 
Sbjct: 102 WREAVAILNIMEKDGVEPDIVSYNTVLSALRHSPDIQNVFVMLKRMRE-KVSPDIVSFNT 160

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNE------ 466
            L AC+R+ D E G+ +L    ED +  ++  F  +I +C R  +Y++A  L E      
Sbjct: 161 ALAACQRQCDWESGVAILEMMSEDQIERDVFTFSTLISLCDRCGKYDEAFALKEEMDAKN 220

Query: 467 ---HVLSFNSGRPQIENKWT------------SLALMVYREAIVAGTIPTVEVVSKVLG 510
              ++ +FN+     +N               ++A +++ EA  AG  P +   + +LG
Sbjct: 221 VSPNIYTFNALIAVCKNSLATSLMSRKRQNTLTIAQILFAEAKAAGLRPDIVTYNSLLG 279


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 175/362 (48%), Gaps = 3/362 (0%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           ++++S        E A  V    Q+AG   +   Y+ +++   +SG+     +VF  M  
Sbjct: 203 SIMISTLGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKK 262

Query: 156 AGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           AG +PN+ TY  +ID C K G  + KA   +  M+ + V+PDR+ FN+LI  C +    +
Sbjct: 263 AGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWE 322

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            +  V AEM  +   ++ D  T   L+ A    GQ++ A  +   +   NI      Y+ 
Sbjct: 323 DSQRVFAEM--QRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYST 380

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   + G +E A  +Y DM + GV PD V  + LID     G+ + A    ++ +  G
Sbjct: 381 MIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVG 440

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +   +++Y++L+ A      ++ A  L++ MK+  L P V T +ALI A           
Sbjct: 441 LKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDAT 500

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
            +  + K  GL P+ + YS L+ +C +   VE  ++LL +  + G+ PN+V +  +I   
Sbjct: 501 SIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAY 560

Query: 455 SR 456
            R
Sbjct: 561 GR 562



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 176/366 (48%), Gaps = 5/366 (1%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADC-KLYTTLITTCAKSGKVDAMFEV 149
           L  F  L+    +  + E A Q    +VQ+  L+++  KL + +I+T  + GKV+   +V
Sbjct: 162 LEDFPYLLRELGNRGEWERALQGYEWMVQQGHLRSEWSKLASIMISTLGRLGKVEIALDV 221

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+    AG   NV+ Y A++    ++G+  +A   +  M+    KP+ + +N +I ACG+
Sbjct: 222 FNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGK 281

Query: 210 SGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G  + +A D+  EM  E   V+PD IT  +L+  C+     + ++ V+  + +  I+  
Sbjct: 282 GGVDLKKALDIFEEMQKE--GVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQD 339

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I+   + G  E A S+   M  K + P+ V  S +ID  G  G  E A  +  
Sbjct: 340 IFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYH 399

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + K  G+    +SY++L+   +    +  AL   + M+ + LK  V T NALI A     
Sbjct: 400 DMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQG 459

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +      +   MK+ GL PN +TYS L+ A  +    +    +  + K  G+ P++V++ 
Sbjct: 460 KYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYS 519

Query: 449 CIIGMC 454
            +I  C
Sbjct: 520 SLIDSC 525



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 201/453 (44%), Gaps = 17/453 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R G++   +D+    ++ G  +    Y A      +S +  +EA + F+ +      P
Sbjct: 209 LGRLGKVEIALDVFNRAQKAGFGNNVYAYSAMVSAYGRSGRC-REALKVFQAMKKAGCKP 267

Query: 91  TLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            L T+N ++  C     D + A  +   +Q+ G++ D   + +LI  C++    +    V
Sbjct: 268 NLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRV 327

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   GIE ++ TY  LID   K GQ+  A      MR KN+ P+ V ++ +I   G+
Sbjct: 328 FAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGK 387

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  + A  +  +M      V PD ++   L+   A  G+ D A    K + +  +K   
Sbjct: 388 LGCFEEAIGLYHDMKES--GVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADV 445

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I+   + G ++ A  ++D M  +G++P+ +  SALID    AG  + A  I  E
Sbjct: 446 VTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVE 505

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G+   ++ YSSL+ +C      + A+ L + M    ++P + T N+LI A     Q
Sbjct: 506 FKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQ 565

Query: 390 LPKTMEVLSDM-----KSLGLCPNTITYSILLVACERKDDVEV--GLMLLSQAKEDGVIP 442
           +        +M       +G     I    L       D   V   + +  + ++ G+ P
Sbjct: 566 VDNVEAAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKP 625

Query: 443 NLVMFKCIIGMCSR--RYEKARTLNEHVLSFNS 473
           N+V F  I+  CSR    ++A  L E +  F+S
Sbjct: 626 NVVTFSAILNACSRCSSLQEASVLLEQMRFFDS 658



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 142/324 (43%), Gaps = 28/324 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN LI    + GR  + +   +DMER GL   D V +    +    Q   K+A   F  
Sbjct: 412 SYNTLIDIYAKLGRFDDALTACKDMERVGL-KADVVTYNALIDAYGKQGKYKDAAGLFDK 470

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN  + T++ L+   + +   + A  +    + AGLK D  LY++LI +C K 
Sbjct: 471 MKAEGLVPN--VLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKC 528

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRV 198
           G V+    +  EM  AGI+PN+ TY +LID   + GQV     A G M     N   DR 
Sbjct: 529 GLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRS 588

Query: 199 VFNALITACGQSGAVDR-----AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
                 T   Q  A D      A  V  EM  +   + P+ +T  A++ AC+    +  A
Sbjct: 589 TEIICKTLTSQQNANDHTGVLAAVSVFHEM--QQFGLKPNVVTFSAILNACSRCSSLQEA 646

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALI 311
             + + +  ++      VY IA        +  W  A  ++D++ +        F +AL 
Sbjct: 647 SVLLEQMRFFD----SWVYGIAHGLLMGLREHVWVEAQRLFDEIARMDYATGAAFYNALT 702

Query: 312 DFAGHAGKVEAAFEILQEAKNQGI 335
           D   H G+ + A E++  AK + +
Sbjct: 703 DVLWHFGQRQGAQEVVVAAKRRQV 726



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 38/158 (24%)

Query: 337 VGIISYSSLMGACSNAKNWQKALELYE------HMKSIKLKPT---VSTM---------- 377
           VG+  +  L+    N   W++AL+ YE      H++S   K     +ST+          
Sbjct: 160 VGLEDFPYLLRELGNRGEWERALQGYEWMVQQGHLRSEWSKLASIMISTLGRLGKVEIAL 219

Query: 378 ------------------NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
                             +A+++A     +  + ++V   MK  G  PN ITY+ ++ AC
Sbjct: 220 DVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDAC 279

Query: 420 ERKD-DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            +   D++  L +  + +++GV P+ + F  +I +CSR
Sbjct: 280 GKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSR 317


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 196/406 (48%), Gaps = 13/406 (3%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LIR     G++   +++  +M+ KG  + D+  +    N       ++EA  FF  
Sbjct: 102 AYNVLIRYFGRSGQLDSAMEMFREMKIKGS-EPDEYTYGFLVNALGKAGRVQEARSFFDA 160

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N+LM         + A  +   ++  G +     Y  L+     +G+
Sbjct: 161 MLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGR 220

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           V A  ++FH+M   G  P+ +TY  L++G  K+G+V +A   +  M  + V  D V +N+
Sbjct: 221 VGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNS 280

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L+    ++G +DR + ++ EM+ +     PD  +   +M A   A + D AREV+  + +
Sbjct: 281 LLATLAKAGNMDRVWKLMKEMSRK--GFHPDAFSFNTIMDALGKANKPDAAREVFARMVE 338

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              K     Y I I+  ++ GD   A  + ++M + G IP+    ++LI +    G+V+ 
Sbjct: 339 SGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDE 398

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           AF +L+E +  G    +++Y+ LM         Q+A  L++ MK   ++P   +    I 
Sbjct: 399 AFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRID 458

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEV 427
            L   D+L + + +  DMK++G CP +   Y IL+ A  R  D E+
Sbjct: 459 GLAFDDRLDEALVLFKDMKAVG-CPVDKAMYRILIRAAHRAGDTEL 503



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 183/377 (48%), Gaps = 8/377 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +PT+  F  L+ +  +S + E A  V + + + G + D   Y  LI    +SG++D+  E
Sbjct: 62  SPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAME 121

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM   G EP+ +TYG L++   KAG+V +A   +  M  + + P+   +N L+ A  
Sbjct: 122 MFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFR 181

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
           + G +D A  + AEM        P  +T   L+ A  +AG+V  AR   K+ HK    G 
Sbjct: 182 KVGQLDMALGLFAEMKR--RGFQPSVVTYNILLDALCSAGRVGAAR---KLFHKMTGDGC 236

Query: 268 TPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           +P+ YT +  +N   ++G  E A  V+ +M  +GV  D V  ++L+     AG ++  ++
Sbjct: 237 SPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWK 296

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +++E   +G      S++++M A   A     A E++  M     KP + + N LI +  
Sbjct: 297 LMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYA 356

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
                 +  ++L +M   G  P T TY+ L+        V+    +L + +  G  P++V
Sbjct: 357 RFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVV 416

Query: 446 MFKCIIGMCSRRYEKAR 462
            +  ++ M  +R E  R
Sbjct: 417 TYNRLMDMLGKRGENQR 433



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 122/270 (45%), Gaps = 4/270 (1%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           +   + ++P+ +V   LITA G+      AFD+  +  AE     P       L+    N
Sbjct: 22  VAEGRPLRPNTLV--KLITAYGRGNKSGDAFDLFNQ--AESFACSPTVHAFTKLIDILVN 77

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           +G+ +RA  VYK + +   +     Y + I    ++G  + A  ++ +M  KG  PDE  
Sbjct: 78  SGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYT 137

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
              L++  G AG+V+ A         +G++  I +Y+ LM A         AL L+  MK
Sbjct: 138 YGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMK 197

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
               +P+V T N L+ ALC   ++    ++   M   G  P++ TYS L+    +   VE
Sbjct: 198 RRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVE 257

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
               +  +  + GV  +LV +  ++   ++
Sbjct: 258 EAHKVFREMVDRGVAVDLVNYNSLLATLAK 287



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 161/362 (44%), Gaps = 9/362 (2%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + +YN L+    + G++   + L  +M+R+G       Y+     +C + +     
Sbjct: 166 LTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAAR 225

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F K+  +   P   T++ L++    S   E A +V R + + G+  D   Y +L+ T 
Sbjct: 226 KLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATL 285

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
           AK+G +D ++++  EM   G  P+  ++  ++D   KA +   A   +  M     KPD 
Sbjct: 286 AKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDL 345

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           + +N LI +  + G   +A  +L EM  E   + P+  T  +L+   A  GQVD A  V 
Sbjct: 346 ISYNILIDSYARFGDAAQARQMLEEM-VEAGFI-PETKTYNSLIHWLATDGQVDEAFAVL 403

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + +     +     Y   ++   + G+ + A  ++  M  KGV PD +  +  ID     
Sbjct: 404 EEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFD 463

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            +++ A  + ++ K  G  V    Y  L+ A   A + +   +L    + + ++  +++ 
Sbjct: 464 DRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKHESQFMPVESRLTSQ 523

Query: 378 NA 379
            A
Sbjct: 524 KA 525


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 200/399 (50%), Gaps = 14/399 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++ +L++      ++  A ++LR +++   + D  +Y+T+I    K   VD  ++++ EM
Sbjct: 117 SYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEM 176

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              GI P+V TY  LI G   AGQ+ +AFG    M  KN+ P+   +N LI    + G V
Sbjct: 177 NARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKV 236

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             + ++LA M  +   V PD +    LM      G+V +A++++ ++ +  +      Y 
Sbjct: 237 KESKNLLAVMTKK--GVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYN 294

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I IN   +    + A ++  +M  K +IPD V  S+LID     G++    ++ +E  ++
Sbjct: 295 IIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHR 354

Query: 334 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           G    +++Y+SL+ G C N +N  KA+ L+  MK   ++P   T  ALI  LC G +L K
Sbjct: 355 GQPANLVTYNSLLDGLCKN-QNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKK 413

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
              +   +   G C +  TY++++    ++   +  L + S+ +++G IPN V F+ II 
Sbjct: 414 GQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIR 473

Query: 453 MCSRRYE--KARTLNEHVLS--------FNSGRPQIENK 481
               + E  KA  L   +++        F+S R  + NK
Sbjct: 474 SLLEKDENDKAEKLLHEMIAKGLLPFRNFHSERSSVTNK 512



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 177/382 (46%), Gaps = 4/382 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T ++L++          +F VL  + + G + +  +  TL+      G+V      
Sbjct: 43  PDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHF 102

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             ++V  G + +  +YG L++G  K G+   A      +  ++ +PD V+++ +I    +
Sbjct: 103 HDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCK 162

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              VD A+D+ +EMNA    + PD IT   L+     AGQ+  A  +   +   NI    
Sbjct: 163 DKLVDEAYDLYSEMNAR--GIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNI 220

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I+   + G  + + ++   MTKKGV PD V  S L+D     G+V+ A +I   
Sbjct: 221 YTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLV 280

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G++  + SY+ ++      K   +A+ L   M    + P   T ++LI  LC   +
Sbjct: 281 MVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGR 340

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +   +++  +M   G   N +TY+ LL    +  +++  + L  + KE G+ PN   +  
Sbjct: 341 ITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTA 400

Query: 450 II-GMC-SRRYEKARTLNEHVL 469
           +I G+C   R +K + L +H+L
Sbjct: 401 LIDGLCKGGRLKKGQALFQHLL 422



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 160/378 (42%), Gaps = 44/378 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L +   + E  DL  +M  +G+      Y       C + + + EAF     +     NP
Sbjct: 160 LCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLM-EAFGLLNEMILKNINP 218

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            + T+N L+ ++C   K  E    +L ++ + G+K D  +Y+ L+      G+V    ++
Sbjct: 219 NIYTYNTLIDTLCKEGKVKESK-NLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQI 277

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  MV  G+ P+V++Y  +I+G  K  +V +A      M  KN+ PD V +++LI    +
Sbjct: 278 FLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCK 337

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +    D+  EM+    P +   +T  +L+        +D+                 
Sbjct: 338 LGRITTILDLTKEMHHRGQPANL--VTYNSLLDGLCKNQNLDK----------------- 378

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
                             A +++  M ++G+ P++   +ALID     G+++    + Q 
Sbjct: 379 ------------------AIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQH 420

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G  + + +Y+ ++        + +AL +   M+     P   T   +I +L + D+
Sbjct: 421 LLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDE 480

Query: 390 LPKTMEVLSDMKSLGLCP 407
             K  ++L +M + GL P
Sbjct: 481 NDKAEKLLHEMIAKGLLP 498



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 161/375 (42%), Gaps = 45/375 (12%)

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M   GI P++ T   LI+     GQ+A +F   G +     +P+ ++ N L+      G
Sbjct: 35  QMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKG 94

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V ++     ++ A+   +D   ++ G L+      G+   A ++ + I   + +    +
Sbjct: 95  EVKKSLHFHDKVVAQGFQMD--QVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVM 152

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y+  I+   +    + A  +Y +M  +G+ PD +  + LI     AG++  AF +L E  
Sbjct: 153 YSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMI 212

Query: 332 NQGISVGIISYSSLM------GACSNAKNW-----------------------------Q 356
            + I+  I +Y++L+      G    +KN                              Q
Sbjct: 213 LKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQ 272

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           KA +++  M    + P V + N +I  LC G ++ + M +L +M    + P+T+TYS L+
Sbjct: 273 KAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLI 332

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGR 475
               +   +   L L  +    G   NLV +  ++ G+C     K + L++ +  F   +
Sbjct: 333 DGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLC-----KNQNLDKAIALFMKMK 387

Query: 476 PQ--IENKWTSLALM 488
            +    NK+T  AL+
Sbjct: 388 ERGIQPNKYTYTALI 402



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 134/315 (42%), Gaps = 4/315 (1%)

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P +  +G ++    K             M +K + PD V  + LI      G +  +F V
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L ++    +   P+ I +  LMK     G+V ++   +  +     +     Y I +N  
Sbjct: 68  LGKILKLGY--QPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGL 125

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            + G+   A  +   +  +   PD V  S +ID       V+ A+++  E   +GI   +
Sbjct: 126 CKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDV 185

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           I+Y++L+     A    +A  L   M    + P + T N LI  LC   ++ ++  +L+ 
Sbjct: 186 ITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAV 245

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRR 457
           M   G+ P+ + YSIL+       +V+    +     + GV P++  +  II G+C  +R
Sbjct: 246 MTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKR 305

Query: 458 YEKARTLNEHVLSFN 472
            ++A  L   +L  N
Sbjct: 306 VDEAMNLLREMLHKN 320



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 32/209 (15%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           H N   D        + L + GRI+  +DL ++M  +G                  Q A 
Sbjct: 318 HKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRG------------------QPA- 358

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                         L T+N L+     +++ + A  +   ++E G++ +   YT LI   
Sbjct: 359 -------------NLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGL 405

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G++     +F  ++  G   +V TY  +I G  K G   +A      M      P+ 
Sbjct: 406 CKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNA 465

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAE 226
           V F  +I +  +    D+A  +L EM A+
Sbjct: 466 VTFEIIIRSLLEKDENDKAEKLLHEMIAK 494


>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 821

 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 195/408 (47%), Gaps = 15/408 (3%)

Query: 81  FRFFKLVPN--PTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKA---DCKLYTTL 133
           FR    + N  P   T+N ++ + +  K  D  G  + + L++E   K    D   Y TL
Sbjct: 370 FRRMSRIDNIAPNTVTYNAVIKIVSRCKRNDCGGITRAMSLLREMATKGCIPDVVTYATL 429

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I   +K  + +   ++F EM  A ++PN + Y +LI    +AG V +A   +  M  + +
Sbjct: 430 IDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAIFEEMTHERI 489

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            PD   FNALI   G+   VD+AF++   M      + PD IT  AL+ A   A    RA
Sbjct: 490 VPDVFAFNALIDGFGKLRQVDKAFEIYDRMRK--LQIQPDRITFNALISASGKAKNSIRA 547

Query: 254 REVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
            E    M   Y +      Y   I+ C ++GD+  A  V+++M  KG+ P  V  +ALI 
Sbjct: 548 LEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIY 607

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
            A  +  + A+F+I+     +G++    + ++L+ AC+  ++   A E+ E  K + + P
Sbjct: 608 GASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHP 667

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T N  I A+   D   K  E+LS+M+S G+ P+ +T + ++  C R+  +++     
Sbjct: 668 DNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLMERGF 727

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF-NSGRPQIE 479
               E  + P+ V F  +I      Y     L++ V+++ N  R Q+E
Sbjct: 728 HMFHEKRLEPDSVTFSLLI----ENYVSHHLLDKAVIAYHNCKRQQLE 771



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 174/378 (46%), Gaps = 36/378 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  L+   +   + E A ++ + ++EA +K +   Y++LI+   ++G V+    +
Sbjct: 421 PDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAI 480

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM +  I P+V  + ALIDG  K  QV KAF  Y  MR   ++PDR+ FNALI+A G+
Sbjct: 481 FEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGK 540

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-- 267
           +    RA + + +M  E++ + PD  +  AL+ AC  +G   +A EV++ +    I+   
Sbjct: 541 AKNSIRALEAMGDM-TEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCT 599

Query: 268 -------------------------------TPEVYTIA--INCCSQTGDWEFACSVYDD 294
                                           P+ YT+   I+ C++  D   A  V + 
Sbjct: 600 VTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEK 659

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
             + GV PD V  +  ID  G     E  FE+L E +++GIS   ++ ++++G C     
Sbjct: 660 FKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGK 719

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
                  +      +L+P   T + LI        L K +    + K   L  N+     
Sbjct: 720 IDLMERGFHMFHEKRLEPDSVTFSLLIENYVSHHLLDKAVIAYHNCKRQQLELNSNVVMH 779

Query: 415 LLVACERKDDVEVGLMLL 432
           LL +  RKD++EV  ++L
Sbjct: 780 LLESLIRKDEIEVAKLIL 797



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 195/442 (44%), Gaps = 40/442 (9%)

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K GK     ++F  M +  ++ +V ++   I    +  + ++A  +   MR ++++P+  
Sbjct: 289 KGGKARECLDMFLSMPSNEVKRDVASWSIYITALGRLERYSEAERSLIWMREEHIQPNIY 348

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-----NAGQVDRA 253
            ++ALI   G+ G   RA      M + +  + P+ +T  A++K  +     + G + RA
Sbjct: 349 TYSALIETLGKGGLCVRALSQFRRM-SRIDNIAPNTVTYNAVIKIVSRCKRNDCGGITRA 407

Query: 254 REVYKMIHKYNIKG-TPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
                ++ +   KG  P+V T A  I+  S+  + E A  ++ +M +  V P+    S+L
Sbjct: 408 ---MSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSL 464

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I     AG VE A  I +E  ++ I   + ++++L+      +   KA E+Y+ M+ +++
Sbjct: 465 ISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQI 524

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACERKDDVEVGL 429
           +P   T NALI+A        + +E + DM  + GL P+  +Y+ L+ AC +  D     
Sbjct: 525 QPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAY 584

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG-RPQIENKWTSLALM 488
            +  + +  G+ P  V F  +I   SR ++ A +     L    G  P      T ++  
Sbjct: 585 EVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISAC 644

Query: 489 VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFG 548
             R+ +        EV+ K                  + LGV  D +      + ID  G
Sbjct: 645 NRRQDLSTA----FEVLEK-----------------FKQLGVHPDNV---TFNTFIDAVG 680

Query: 549 EYDP--RAFSLLEEAASFGIVP 568
           + D   + F LL E  S GI P
Sbjct: 681 KLDSSEKMFELLSEMESRGISP 702



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 44/231 (19%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           HSYN LI    + G  ++  ++ E+M  KG+                             
Sbjct: 565 HSYNALIDACGKSGDFTKAYEVFEEMRTKGI----------------------------- 595

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P   TFN L+   + S D   +F+++ L+ + GL  D     TLI+ C +   +  
Sbjct: 596 ---RPCTVTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLST 652

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            FEV  +    G+ P+  T+   ID   K     K F     M S+ + P +V  N ++ 
Sbjct: 653 AFEVLEKFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVG 712

Query: 206 ACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            CG+ G +D   R F +  E   E     PD +T   L++   +   +D+A
Sbjct: 713 CCGRRGKIDLMERGFHMFHEKRLE-----PDSVTFSLLIENYVSHHLLDKA 758


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 219/452 (48%), Gaps = 11/452 (2%)

Query: 3   DGGKNMLQFPYPNG-KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK 61
           D  + + Q    NG K  NY ++    +H Y   +  G+  E + +LE+M  +GL     
Sbjct: 251 DRAEGVFQQMIDNGFKPNNYTYNC--LIHGY---LSIGKWKEVVQMLEEMSARGLKPDCY 305

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            Y +    +CK+ +  +  F F  ++     P +ST+ +L+   A+          L L+
Sbjct: 306 TYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLM 365

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
            E GL  D  ++    +  AK G +D   ++F++M   G+ PNV  YGALID   K G+V
Sbjct: 366 VENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRV 425

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
             A   +  M ++ V P+ VVFN+L+         +RA +++ EM  +   + P+ +   
Sbjct: 426 DDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQ--GICPNAVFFN 483

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+    N G+V   R +  ++    ++     YT  I+    TG  + A  V+D M   
Sbjct: 484 TLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSI 543

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ P EV  + L+     A +++ A+ + +E   +G++ G+++Y++++      K + +A
Sbjct: 544 GLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEA 603

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            ELY +M +   K  + T N ++  LC  + + +  ++   + S GL  N IT++I++ A
Sbjct: 604 KELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGA 663

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
             +    E  + L +    +G++PN+V ++ +
Sbjct: 664 LLKGGRKEDAMDLFAAIPANGLVPNVVTYRLV 695



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 194/447 (43%), Gaps = 44/447 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N    +G++ +  +L  +M  +G+      Y      +CK+Q   +    F +++ N   
Sbjct: 207 NGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFK 266

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+N L+    S    +   Q+L  +   GLK DC  Y +L+    K+G+       
Sbjct: 267 PNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFF 326

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M+  GI+P V TYG LI G A  G +++      +M    + PD  +FN   +A  +
Sbjct: 327 FDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAK 386

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D+A D+  +M    H + P+ +  GAL+ A    G+VD A EV     K+N     
Sbjct: 387 CGMIDKAMDIFNKMRQ--HGLSPNVVNYGALIDALCKLGRVDDA-EV-----KFN----- 433

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
                                    M  +GV P+ V  ++L+       K E A E++ E
Sbjct: 434 ------------------------QMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYE 469

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             +QGI    + +++L+    N     +   L + M+ + ++P   +   LI+  C   +
Sbjct: 470 MLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGR 529

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             +  +V   M S+GL P  +TY+ LL        ++    L  +    GV P +V +  
Sbjct: 530 TDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNT 589

Query: 450 IIG--MCSRRYEKARTLNEHVLSFNSG 474
           I+     ++R+ +A+ L  +++  NSG
Sbjct: 590 ILHGLFQTKRFSEAKELYLNMI--NSG 614



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 137/324 (42%), Gaps = 10/324 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + PN+ TY  LI    + G +   F A+G++     + D +  N L+        V  A 
Sbjct: 86  VAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAM 145

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEV--YTI 274
           DVL +   E+  + PD ++   L+K   N  + + A E+  M+   +  +  P V  Y+I
Sbjct: 146 DVLLQRMPELGCM-PDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSI 204

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            IN     G  +   +++ +M  +G+ PD V  + +ID    A   + A  + Q+  + G
Sbjct: 205 VINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNG 264

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
                 +Y+ L+    +   W++ +++ E M +  LKP   T  +L+  LC   +  +  
Sbjct: 265 FKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREAR 324

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII--- 451
                M   G+ P   TY IL+     K  +      L    E+G+ P+  +F       
Sbjct: 325 FFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAY 384

Query: 452 ---GMCSRRYEKARTLNEHVLSFN 472
              GM  +  +    + +H LS N
Sbjct: 385 AKCGMIDKAMDIFNKMRQHGLSPN 408



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 156/386 (40%), Gaps = 50/386 (12%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQK 75
           H +S  + +Y  LI    + GR+ +       M  +G+     V+++  + +C   K ++
Sbjct: 403 HGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWER 462

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           A +  +        P    FN L+ ++C   +  EG  +++ L++  G++ D   YT LI
Sbjct: 463 AEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGR-RLIDLMEHVGVRPDAFSYTPLI 521

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +    +G+ D   +VF  MV+ G+ P   TY  L+ G   A ++  A+  +  M  K V 
Sbjct: 522 SGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVT 581

Query: 195 PDRVVFNALI-----------------------TACG------------QSGAVDRAFDV 219
           P  V +N ++                       T C             +S  VD AF +
Sbjct: 582 PGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKM 641

Query: 220 LAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
              + ++   ++     I IGAL+K     G+ + A +++  I    +      Y +   
Sbjct: 642 FQSLCSKGLQLNIITFTIMIGALLKG----GRKEDAMDLFAAIPANGLVPNVVTYRLVAE 697

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
              + G  E   S++  M K G  P+   L+AL+    H G +  A   L +   +  SV
Sbjct: 698 NLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSV 757

Query: 338 GIISYSSLMGACSNAKNWQKALELYE 363
              + S LM   ++ +    A  L E
Sbjct: 758 EASTTSLLMSIFTSDEYQHHAKSLPE 783


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 178/357 (49%), Gaps = 4/357 (1%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           D+ GA ++LR +     K + ++Y+T+I    K   V   + +F EM   GI  +V TY 
Sbjct: 427 DTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYS 486

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI G    G++ +A G    M  K + PD   +  L+ A G+ G V  A  VLA M   
Sbjct: 487 TLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKA 546

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V PD  T   LM       +V +A+ V+  +    +      YTI IN   ++   +
Sbjct: 547 C--VKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVD 604

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A +++ +M +K ++PD V  S+L+D    +G++   ++++ E +++G    +I+Y+SL+
Sbjct: 605 EALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLI 664

Query: 347 -GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
            G C N  +  KA+ L+  MK   ++P   T   L+  LC G +L    EV  D+ + G 
Sbjct: 665 DGLCKNG-HLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY 723

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
             +   Y++++    ++  +E  L +LS+ +E+G IPN V F  II    ++ E  +
Sbjct: 724 HLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDK 780



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/430 (23%), Positives = 177/430 (41%), Gaps = 57/430 (13%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEA 80
           V E LH +++L+ QG                   +++V +A   N VC+   ++ AIK  
Sbjct: 79  VKEALHFHDKLLAQG-----------------FQLNQVSYATLINGVCRIGDTRAAIKFL 121

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +    +  P +  +N ++      +    A+ +   +   G+ A+   Y+TLI      
Sbjct: 122 RKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIV 181

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK+     + + MV   I PNV TY  L+D   K G+V +A     +M    VK + + +
Sbjct: 182 GKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITY 241

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-- 258
           + L+        V +A  V   M+  +  V PD  +   ++       +VD+A  ++K  
Sbjct: 242 STLMDGYFLVYEVKKAQHVFNAMS--LMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEM 299

Query: 259 -----------------------------MIHKYNIKGT-PEVYT--IAINCCSQTGDWE 286
                                        + H+  +KG  P+++T  I INC    G   
Sbjct: 300 ILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQIT 359

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
           F  SV   + K+G  P  V L+ LI      G+V+ A     +   QG  +  +SY++L+
Sbjct: 360 FGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLI 419

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                  + + A++L   +     KP V   + +I ALC    + +   + S+M   G+ 
Sbjct: 420 NGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGIS 479

Query: 407 PNTITYSILL 416
            + +TYS L+
Sbjct: 480 ADVVTYSTLI 489



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 117/502 (23%), Positives = 203/502 (40%), Gaps = 83/502 (16%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I    +   +SE   L  +M  KG+      Y    +  C   K +KEA     ++
Sbjct: 136 YNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGK-LKEALGLLNVM 194

Query: 88  P----NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                NP + T+N+L+ ++C   K  E A  VL ++ +A +K++   Y+TL+       +
Sbjct: 195 VLKTINPNVCTYNILVDALCKEGKVKE-AKSVLAVMLKACVKSNVITYSTLMDGYFLVYE 253

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM-------------- 188
           V     VF+ M   G+ P+VH+Y  +I+G  K  +V KA   +  M              
Sbjct: 254 VKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKI 313

Query: 189 --------------------RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
                                 K ++PD    N LI      G +   F VLA++    +
Sbjct: 314 LDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGY 373

Query: 229 PVDPDHITIGALMKACANAGQVDRA--------------------------------REV 256
           P  P  +T+  L+K     GQV +A                                R  
Sbjct: 374 P--PSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGA 431

Query: 257 YKMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            K++ K +    K   E+Y+  I+   +      A  ++ +MT KG+  D V  S LI  
Sbjct: 432 IKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYG 491

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               GK++ A  +L E   + I+  + +Y+ L+ A       ++A  +   M    +KP 
Sbjct: 492 FCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPD 551

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           V T N L+       ++ K   V + M  +G+ P+  TY+IL+    +   V+  L L  
Sbjct: 552 VFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFK 611

Query: 434 QAKEDGVIPNLVMFKCII-GMC 454
           +  +  ++P+ V +  ++ G+C
Sbjct: 612 EMHQKNMVPDTVTYSSLVDGLC 633



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 161/400 (40%), Gaps = 39/400 (9%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           D+  A + LR +     K + ++Y T+I    K   V   + +F EM   GI  NV TY 
Sbjct: 113 DTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYS 172

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI G    G++ +A G   +M  K + P+   +N L+ A  + G V  A  VLA M   
Sbjct: 173 TLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKA 232

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKM---------IHKYNI------------ 265
              V  + IT   LM       +V +A+ V+           +H YNI            
Sbjct: 233 C--VKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVD 290

Query: 266 ------------KGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
                       +  P + +   ++  ++   +  A S+   +  KG+ PD   L+ LI+
Sbjct: 291 KALNLFKEMILSRFPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILIN 350

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
              H G++   F +L +   +G     ++ ++L+         +KAL  ++ + +   + 
Sbjct: 351 CFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQL 410

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              +   LI  +C        +++L  +      PN   YS ++ A  +   V     L 
Sbjct: 411 NQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLF 470

Query: 433 SQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHVL 469
           S+    G+  ++V +  +I G C   +  E    LNE VL
Sbjct: 471 SEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVL 510



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 77/382 (20%), Positives = 151/382 (39%), Gaps = 35/382 (9%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           D   +  VL  + + G   D     TLI      G+V        +++  G + N  +Y 
Sbjct: 43  DDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYA 102

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI+G  + G    A      +  +  KP+  ++N +I A  +   V  A+ + +EM  +
Sbjct: 103 TLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVK 162

Query: 227 ---------------------------------VHPVDPDHITIGALMKACANAGQVDRA 253
                                            +  ++P+  T   L+ A    G+V  A
Sbjct: 163 GISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEA 222

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           + V  ++ K  +K     Y+  ++      + + A  V++ M+  GV PD    + +I+ 
Sbjct: 223 KSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMING 282

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
                +V+ A  + +E         II ++ ++ + +  K++  A+ L   ++   ++P 
Sbjct: 283 FCKIKRVDKALNLFKEMILSRFP-PIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPD 341

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + T+N LI   C   Q+     VL+ +   G  P+T+T + L+     K  V+  L    
Sbjct: 342 LFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHD 401

Query: 434 QAKEDGVIPNLVMFKCII-GMC 454
           +    G   N V +  +I G+C
Sbjct: 402 KLLAQGFQLNQVSYATLINGVC 423



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 7/259 (2%)

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           +  VL ++    +P  PD +T+  L+K     GQV  A   +  +     +     Y   
Sbjct: 47  SLSVLTKILKRGYP--PDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATL 104

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           IN   + GD   A      +  +   P+    + +ID       V  A+ +  E   +GI
Sbjct: 105 INGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGI 164

Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           S  +++YS+L+ G C   K  ++AL L   M    + P V T N L+ ALC   ++ +  
Sbjct: 165 SANVVTYSTLIYGFCIVGK-LKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAK 223

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
            VL+ M    +  N ITYS L+       +V+    + +     GV P++  +  +I G 
Sbjct: 224 SVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGF 283

Query: 454 CS-RRYEKARTL-NEHVLS 470
           C  +R +KA  L  E +LS
Sbjct: 284 CKIKRVDKALNLFKEMILS 302



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%)

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           Q  D   + SV   + K+G  PD V L+ LI      G+V+ A     +   QG  +  +
Sbjct: 40  QNVDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQV 99

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           SY++L+       + + A++    +     KP V   N +I ALC    + +   + S+M
Sbjct: 100 SYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEM 159

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              G+  N +TYS L+        ++  L LL+      + PN+  +  ++
Sbjct: 160 TVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILV 210


>gi|299471552|emb|CBN80038.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 192/435 (44%), Gaps = 45/435 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           R G   + +  L+ M+R     + +  H      C      ++A +  + +P    +P +
Sbjct: 6   RGGDRRKALRALDGMKRLPRELLHQKSHCMVITACGRGGQWEQAVKLLREMPTAGLSPNV 65

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+N + + CA  +  +GA  +L+ +   GL  D   Y++ +  CAK  +      +  E
Sbjct: 66  ITYNAVFAACAKGEQWKGALALLKEMTAVGLTPDVITYSSAVDACAKGEQWKGALALLKE 125

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G+ P+V TY + +D CAK  Q  +A      M +  + P+ + +N L         
Sbjct: 126 MTAVGLTPDVITYSSAVDACAKGEQWKEALALLKEMTAVGLTPNVISYNGL--------- 176

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV- 271
                           P      T  + +  C+  GQ      + K +    +  TP V 
Sbjct: 177 ----------------PSMSPWCTYNSAIDGCSKGGQWKETLALLKEMAAVGL--TPNVI 218

Query: 272 -YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE--------- 321
            Y  AI+ CS+ G W+ A ++  +MT  G+ PD +  S+ ID        +         
Sbjct: 219 TYNSAIDACSKGGQWKEALALLKEMTAVGLTPDVISYSSAIDACSKGATAQLFPCAKGEQ 278

Query: 322 --AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
              A  +L+E    G++  ++SYS+ + AC+    W+ AL L + M ++ L P V T N+
Sbjct: 279 WKGALALLKEMTVVGLTPNVVSYSAAI-ACAKGDQWKVALALLKKMTAVGLTPDVITCNS 337

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
            I A   G Q    + +L +M ++GL P+ + Y+  + AC R    + G+ LL + +E G
Sbjct: 338 AIDACSKGGQWETALALLKEMAAVGLTPSVVGYNSAIDACARGGRWKEGVDLLEEMRELG 397

Query: 440 VIPNLVMFKCIIGMC 454
           V+P+++ +  ++  C
Sbjct: 398 VVPDVITYHALMVTC 412



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 171/368 (46%), Gaps = 32/368 (8%)

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
           K +  +IT C + G+ +   ++  EM  AG+ PNV TY A+   CAK  Q   A      
Sbjct: 31  KSHCMVITACGRGGQWEQAVKLLREMPTAGLSPNVITYNAVFAACAKGEQWKGALALLKE 90

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M +  + PD + +++ + AC +      A  +L EM A    + PD IT  + + ACA  
Sbjct: 91  MTAVGLTPDVITYSSAVDACAKGEQWKGALALLKEMTA--VGLTPDVITYSSAVDACAKG 148

Query: 248 GQVDRAREVYKMIHKYNIKGTPEV--------------YTIAINCCSQTGDWEFACSVYD 293
            Q   A  + K +    +  TP V              Y  AI+ CS+ G W+   ++  
Sbjct: 149 EQWKEALALLKEMTAVGL--TPNVISYNGLPSMSPWCTYNSAIDGCSKGGQWKETLALLK 206

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA- 352
           +M   G+ P+ +  ++ ID     G+ + A  +L+E    G++  +ISYSS + ACS   
Sbjct: 207 EMAAVGLTPNVITYNSAIDACSKGGQWKEALALLKEMTAVGLTPDVISYSSAIDACSKGA 266

Query: 353 ----------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
                     + W+ AL L + M  + L P V + +A I A   GDQ    + +L  M +
Sbjct: 267 TAQLFPCAKGEQWKGALALLKEMTVVGLTPNVVSYSAAI-ACAKGDQWKVALALLKKMTA 325

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEK 460
           +GL P+ IT +  + AC +    E  L LL +    G+ P++V +   I  C+R  R+++
Sbjct: 326 VGLTPDVITCNSAIDACSKGGQWETALALLKEMAAVGLTPSVVGYNSAIDACARGGRWKE 385

Query: 461 ARTLNEHV 468
              L E +
Sbjct: 386 GVDLLEEM 393



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 157/346 (45%), Gaps = 29/346 (8%)

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           ++ AC   GQ ++A ++ + +    +      Y      C++   W+ A ++  +MT  G
Sbjct: 36  VITACGRGGQWEQAVKLLREMPTAGLSPNVITYNAVFAACAKGEQWKGALALLKEMTAVG 95

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + PD +  S+ +D      + + A  +L+E    G++  +I+YSS + AC+  + W++AL
Sbjct: 96  LTPDVITYSSAVDACAKGEQWKGALALLKEMTAVGLTPDVITYSSAVDACAKGEQWKEAL 155

Query: 360 ELYEHMKSIKLKPTVSTMNAL------------ITALCDGDQLPKTMEVLSDMKSLGLCP 407
            L + M ++ L P V + N L            I     G Q  +T+ +L +M ++GL P
Sbjct: 156 ALLKEMTAVGLTPNVISYNGLPSMSPWCTYNSAIDGCSKGGQWKETLALLKEMAAVGLTP 215

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 467
           N ITY+  + AC +    +  L LL +    G+ P+++ +   I  CS      +     
Sbjct: 216 NVITYNSAIDACSKGGQWKEALALLKEMTAVGLTPDVISYSSAIDACS------KGATAQ 269

Query: 468 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL---QLPYNADIRERL 524
           +     G      +W   AL + +E  V G  P V   S  + C    Q      + +++
Sbjct: 270 LFPCAKGE-----QWKG-ALALLKEMTVVGLTPNVVSYSAAIACAKGDQWKVALALLKKM 323

Query: 525 VENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
              +G++ D +  ++        G+++  A +LL+E A+ G+ P V
Sbjct: 324 TA-VGLTPDVITCNSAIDACSKGGQWE-TALALLKEMAAVGLTPSV 367



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 115/252 (45%), Gaps = 33/252 (13%)

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSA----LIDFAGHAGKVEAAFEILQEAKNQGI 335
           S+ GD   A    D M +   +P E+        +I   G  G+ E A ++L+E    G+
Sbjct: 5   SRGGDRRKALRALDGMKR---LPRELLHQKSHCMVITACGRGGQWEQAVKLLREMPTAGL 61

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           S  +I+Y+++  AC+  + W+ AL L + M ++ L P V T ++ + A   G+Q    + 
Sbjct: 62  SPNVITYNAVFAACAKGEQWKGALALLKEMTAVGLTPDVITYSSAVDACAKGEQWKGALA 121

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM-- 453
           +L +M ++GL P+ ITYS  + AC + +  +  L LL +    G+ PN++ +  +  M  
Sbjct: 122 LLKEMTAVGLTPDVITYSSAVDACAKGEQWKEALALLKEMTAVGLTPNVISYNGLPSMSP 181

Query: 454 ----------CSRRYEKART-----------LNEHVLSFNSGRPQIE--NKWTSLALMVY 490
                     CS+  +   T           L  +V+++NS         +W   AL + 
Sbjct: 182 WCTYNSAIDGCSKGGQWKETLALLKEMAAVGLTPNVITYNSAIDACSKGGQWKE-ALALL 240

Query: 491 REAIVAGTIPTV 502
           +E    G  P V
Sbjct: 241 KEMTAVGLTPDV 252


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 183/366 (50%), Gaps = 7/366 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TFN+LM+    +K  +  +++   +Q      +   Y+ LI    K G V+   +V
Sbjct: 122 PDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKV 181

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M + G  PN+ TY ++IDG  K+G V KAF  +  M S+ +   RVV+N+LI   G+
Sbjct: 182 FLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGR 241

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           SG  D A  +  EM ++   + PDH+T  +L+     AG+   AR +++           
Sbjct: 242 SGRADAAAKLFREMLSK--GLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDV 299

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +Y + I+   ++   + A  ++ ++ + G++PD    +AL+D    +G++  AF +L +
Sbjct: 300 NLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGD 359

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G +  +  Y++L+     +   ++A +L   M+S+  +P V T N LI   C G +
Sbjct: 360 MKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGR 419

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE---DGVI-PNLV 445
           +   + +  ++ + G   NT+TY+ +L        V+    L +  K+   DGVI P+ V
Sbjct: 420 IEDALRLFEEISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFV 478

Query: 446 MFKCII 451
            +  ++
Sbjct: 479 TYTTLL 484



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 165/341 (48%), Gaps = 4/341 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y +LI    K+G       V+  M  +G+ P+ +T+  L++   KA +V   +  +  M+
Sbjct: 92  YNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQ 151

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           ++N  P+ + ++ LI A  + G V++A  V  +M +      P+  T  +++     +G 
Sbjct: 152 NQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKS--RGCRPNIFTYTSMIDGLGKSGH 209

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           VD+A  +++ +    +  T  VY   I+   ++G  + A  ++ +M  KG+ PD V  ++
Sbjct: 210 VDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTS 269

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           L+   G AG+   A  I QEA++ G ++ +  Y+ L+     +K   +A E++  ++   
Sbjct: 270 LVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDG 329

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           L P V T NAL+  LC   ++     +L DMK  G  P+   Y+ L+    +   VE   
Sbjct: 330 LVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAG 389

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468
            LL + +  G  P++V +  +I    +  R E A  L E +
Sbjct: 390 QLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEI 430



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 143/296 (48%), Gaps = 10/296 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L + G + +   L E+M  +GL+    VY++    + +S +A   A  F +++     P 
Sbjct: 204 LGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPD 263

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             TF  L+     +  +  A ++ +  ++ G   D  LY  LI T  KS ++D  +E+F 
Sbjct: 264 HVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFG 323

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           E+   G+ P+V+T+ AL+DG  K+G++  AF   G M+     PD  V+N LI    +SG
Sbjct: 324 ELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSG 383

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V+ A  +L EM +  +  +PD +T   L+      G+++ A  +++ I       T   
Sbjct: 384 RVEEAGQLLLEMQSLGY--EPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFANTV-T 440

Query: 272 YTIAINCCSQTGDWEFACSVYDDM---TKKGVI-PDEVFLSALIDFAGHAGKVEAA 323
           Y   +N     G  + A  +++ M   T  GVI PD V  + L++ A  AG  E A
Sbjct: 441 YNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAGLSELA 496



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 46/96 (47%)

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           +K++E  + M+  +   T S  N+LI A        K + V   M   GL P+T T+++L
Sbjct: 71  EKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVL 130

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + A ++   V+    L  + +     PN++ +  +I
Sbjct: 131 MNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILI 166


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 180/358 (50%), Gaps = 2/358 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++  L++      ++  A ++LR++++   + +  +Y T+I    K   V+  ++++ EM
Sbjct: 117 SYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEM 176

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              GI P+  TY  LI G    GQ+  AF     M  KN+ P   ++N LI A  + G V
Sbjct: 177 DARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNV 236

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++LA M  E   + P  +T   LM      G+V  A++++  + +  +      Y 
Sbjct: 237 KEAKNLLAVMTKE--GIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYN 294

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I IN   +    + A ++  +M  K ++PD V  ++LID    +G++ +A  ++ E  ++
Sbjct: 295 IMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHR 354

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G    +++Y+SL+ A    +N  KA  L+  MK   ++PT+ T  ALI  LC G +L   
Sbjct: 355 GQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNA 414

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            E+   +   G C +  TY++++    ++   +  L + S+ +++G IPN V F+ II
Sbjct: 415 QELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIII 472



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 177/378 (46%), Gaps = 4/378 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T N+L++          +F VL  + + G + D     TL+      G+V        ++
Sbjct: 47  TLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKV 106

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           V  G + +  +YG L++G  K G+   A     ++  ++ +P+ V++N +I    +   V
Sbjct: 107 VAQGFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLV 166

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + A+D+ +EM+A    + PD IT   L+      GQ+  A  +   +   NI     +Y 
Sbjct: 167 NEAYDLYSEMDAR--GIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYN 224

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I IN   + G+ + A ++   MTK+G+ P  V  S L+D     G+V+ A +I       
Sbjct: 225 ILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQM 284

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G++  + SY+ ++      K   +A+ L   M    + P   T N+LI  LC   ++   
Sbjct: 285 GVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSA 344

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
           + ++++M   G   + +TY+ LL A  +  +++    L  + KE G+ P +  +  +I G
Sbjct: 345 LNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDG 404

Query: 453 MC-SRRYEKARTLNEHVL 469
           +C   R + A+ L +H+L
Sbjct: 405 LCKGGRLKNAQELFQHLL 422



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 166/385 (43%), Gaps = 52/385 (13%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I    +   ++E  DL  +M+ +G+      Y    +  C     + +    F L+
Sbjct: 153 YNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFC----LLGQLMGAFSLL 208

Query: 88  P-------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                   NP +  +N+L++      + + A  +L ++ + G+K     Y+TL+      
Sbjct: 209 DEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLV 268

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+V    ++FH MV  G+ PNV++Y  +I+G  K  +V +A      M  KN+ PD V +
Sbjct: 269 GEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTY 328

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N+LI    +SG +  A +++ EM+    P D   +T  +L+ A      +D+A       
Sbjct: 329 NSLIDGLCKSGRITSALNLMNEMHHRGQPADV--VTYTSLLDALCKNQNLDKAT------ 380

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                                        +++  M ++G+ P     +ALID     G++
Sbjct: 381 -----------------------------ALFMKMKERGIQPTMYTYTALIDGLCKGGRL 411

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A E+ Q    +G  + + +Y+ ++        + +AL +   M+     P   T   +
Sbjct: 412 KNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEII 471

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGL 405
           I +L + D+  K  ++L +M + GL
Sbjct: 472 IRSLFEKDENDKAEKLLHEMIAKGL 496



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 158/361 (43%), Gaps = 12/361 (3%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  ++ + AK  +      +  +M   GI  N  T   LI+     GQ+A +F   G + 
Sbjct: 13  FNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSVLGKIL 72

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               +PD +  N L+      G V ++     ++ A+      DH++ G L+      G+
Sbjct: 73  KLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQ--GFQMDHVSYGTLLNGLCKIGE 130

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
              A ++ +MI   + +    +Y   I+   +      A  +Y +M  +G+ PD +  + 
Sbjct: 131 TRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTT 190

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI      G++  AF +L E   + I+ G+  Y+ L+ A     N ++A  L   M    
Sbjct: 191 LIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEG 250

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVE 426
           +KP V T + L+   C   ++    ++   M  +G+ PN  +Y+I+   L  C+R D+  
Sbjct: 251 IKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDE-- 308

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTS 484
             + LL +     ++P+ V +  +I G+C S R   A  L   +   + G+P     +TS
Sbjct: 309 -AMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEM--HHRGQPADVVTYTS 365

Query: 485 L 485
           L
Sbjct: 366 L 366



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 80/185 (43%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P  I    ++ + A   Q   A  + K +    I+       I INC    G   F+ SV
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
              + K G  PD + L+ L+      G+V+ +     +   QG  +  +SY +L+     
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCK 127

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
               + A++L   ++    +P V   N +I  LC    + +  ++ S+M + G+ P+ IT
Sbjct: 128 IGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAIT 187

Query: 412 YSILL 416
           Y+ L+
Sbjct: 188 YTTLI 192



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 36/200 (18%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + GRI+  ++L+ +M  +G       Y +    +CK+Q   K    F K+
Sbjct: 327 TYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKM 386

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
                                           +E G++     YT LI    K G++   
Sbjct: 387 --------------------------------KERGIQPTMYTYTALIDGLCKGGRLKNA 414

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E+F  ++  G   +V TY  +I G  K G   +A      M      P+ V F  +I +
Sbjct: 415 QELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRS 474

Query: 207 CGQSGAVDRAFDVLAEMNAE 226
             +    D+A  +L EM A+
Sbjct: 475 LFEKDENDKAEKLLHEMIAK 494


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 195/386 (50%), Gaps = 14/386 (3%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           ++  A ++LR++++   + D  +Y T+I    K   V+  ++ + EM + GI P+V TY 
Sbjct: 252 ETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYS 311

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI G   AGQ+  AF     M  KN+ PD   +  LI A  + G +  A ++L  M  E
Sbjct: 312 TLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKE 371

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V P+ +T   LM      G+V  A++++  + +  +  +   Y I IN   +    +
Sbjct: 372 --GVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVD 429

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A ++  +M  K V+P+ V  ++LID    +G++ +A ++++E  ++G    +I+Y+SL+
Sbjct: 430 EAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLL 489

Query: 347 -GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
            G C N +N  KA+ L+  MK   ++P   T  ALI  LC G +L    ++   +   G 
Sbjct: 490 DGLCKN-QNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGC 548

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK---AR 462
           C +  TY++++    ++  ++  L + S+ +++G IP+ V F+ II     + E     +
Sbjct: 549 CIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEK 608

Query: 463 TLNE-------HVLSFNSGRPQIENK 481
            L+E       H  +F+  R  + NK
Sbjct: 609 LLHEMIAKGLLHFRNFHGERSPVTNK 634



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 179/382 (46%), Gaps = 4/382 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T ++L++          +F VL  + + G + +  + TTL+      G+V      
Sbjct: 165 PDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHF 224

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             ++V  G + N  +YG L++G  K G+   A     ++  ++ +PD V++N +I    +
Sbjct: 225 HDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCK 284

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              V+ A+D   EMN+    + PD IT   L+     AGQ+  A  +   +   NI    
Sbjct: 285 DKLVNEAYDFYTEMNSR--GIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDV 342

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YTI I+   + G  + A ++   MTK+GV P+ V  S L+D     G+V  A +I   
Sbjct: 343 YTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHA 402

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                ++  + SY+ ++      K+  +A+ L   M    + P   T N+LI  LC   +
Sbjct: 403 MVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGR 462

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +   ++++ ++   G   + ITY+ LL    +  +++  + L  + KE G+ PN   +  
Sbjct: 463 ITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTA 522

Query: 450 II-GMC-SRRYEKARTLNEHVL 469
           +I G+C   R + A+ L +H+L
Sbjct: 523 LIDGLCKGARLKNAQKLFQHIL 544



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 164/383 (42%), Gaps = 48/383 (12%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I    +   ++E  D   +M  +G+      Y       C + + +  AF     +
Sbjct: 275 YNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMG-AFSLLNEM 333

Query: 88  P----NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                NP + T+ +L+ ++C   K  E A  +L ++ + G+K +   Y+TL+      G+
Sbjct: 334 TLKNINPDVYTYTILIDALCKEGKLKE-AKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGE 392

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           V    ++FH MV   + P+V +Y  +I+G  K   V +A      M  KNV P+ V +N+
Sbjct: 393 VHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNS 452

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    +SG +  A D++ E++    P D   IT  +L+        +D+          
Sbjct: 453 LIDGLCKSGRITSALDLMKELHHRGQPADV--ITYTSLLDGLCKNQNLDK---------- 500

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                                    A +++  M ++G+ P++   +ALID      +++ 
Sbjct: 501 -------------------------AIALFMKMKERGIQPNKYTYTALIDGLCKGARLKN 535

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A ++ Q    +G  + + +Y+ ++G         +AL +   M+     P   T   +I 
Sbjct: 536 AQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIR 595

Query: 383 ALCDGDQLPKTMEVLSDMKSLGL 405
           +L + D+  K  ++L +M + GL
Sbjct: 596 SLFEKDENDKAEKLLHEMIAKGL 618



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 110/267 (41%), Gaps = 2/267 (0%)

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+ M+     P++  +G ++    K      A      M  K ++PD V  + LI     
Sbjct: 120 FNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCH 179

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +  +F VL ++    +   P+ I +  LMK     G+V ++   +  +     +   
Sbjct: 180 LGQMAFSFSVLGKILKLGY--QPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQ 237

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +N   + G+   A  +   +  +   PD V  + +ID       V  A++   E
Sbjct: 238 VSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTE 297

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             ++GI   +I+YS+L+     A     A  L   M    + P V T   LI ALC   +
Sbjct: 298 MNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGK 357

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
           L +   +L  M   G+ PN +TYS L+
Sbjct: 358 LKEAKNLLGVMTKEGVKPNVVTYSTLM 384



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 122/270 (45%), Gaps = 4/270 (1%)

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           G++  +N  P  + F  ++ +  +      A  +  +M  EV  ++PD +T+  L+    
Sbjct: 122 GMLLMRNT-PSIIEFGKILGSLVKMKHFPTAISLSKQM--EVKGIEPDLVTLSILINCFC 178

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           + GQ+  +  V   I K   +    + T  +      G+ + +   +D +  +G   ++V
Sbjct: 179 HLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQV 238

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
               L++     G+   A ++L+  +++     ++ Y++++      K   +A + Y  M
Sbjct: 239 SYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEM 298

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
            S  + P V T + LI   C   QL     +L++M    + P+  TY+IL+ A  ++  +
Sbjct: 299 NSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKL 358

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +    LL    ++GV PN+V +  ++ G C
Sbjct: 359 KEAKNLLGVMTKEGVKPNVVTYSTLMDGYC 388


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 174/344 (50%), Gaps = 2/344 (0%)

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           +  A Q+LR V    ++ +  +Y T+I +  K   V+  F+++ EMV+ GI P+V TY A
Sbjct: 177 TSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSA 236

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           LI G    G++  A G +  M S+ + PD   F+ L+    + G V  A +VLA M  + 
Sbjct: 237 LISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQ- 295

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD +T  +LM       QV++A+ ++  + +  +    + Y I IN   +    + 
Sbjct: 296 -GIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDE 354

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A +++ +M  K +IPD V  ++LID    +GK+  A +++ E  ++G+    I+Y+S++ 
Sbjct: 355 AMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILD 414

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           A        KA+ L   MK   ++P + T   LI  LC G +L     +  D+   G   
Sbjct: 415 ALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNI 474

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              TY++++      D  +  L LLS+ +++G IPN   ++ II
Sbjct: 475 TVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIII 518



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/378 (20%), Positives = 156/378 (41%), Gaps = 2/378 (0%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R   + P P +  F  ++         + A  + R ++  G+ +D   +  LI   ++ G
Sbjct: 46  RILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLG 105

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
                F VF  ++  G EPN  T   LI G    GQ+ +A   +  + +     ++V + 
Sbjct: 106 HTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYG 165

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    + G    A  +L  ++ ++  V P+ +    ++ +      V+ A ++Y  + 
Sbjct: 166 TLINGLCKVGQTSAALQLLRRVDGKL--VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMV 223

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              I      Y+  I+     G    A  +++ M  + + PD    S L+D     G+V+
Sbjct: 224 SKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVK 283

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +L     QGI   +++Y SLM      K   KA  ++  M    +   V + N +I
Sbjct: 284 EAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMI 343

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
              C   ++ + M +  +M    + P+ +TY+ L+    +   +   L L+ +  + GV 
Sbjct: 344 NGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVP 403

Query: 442 PNLVMFKCIIGMCSRRYE 459
            + + +  I+    + ++
Sbjct: 404 HDKITYNSILDALCKNHQ 421



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 4/317 (1%)

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+ ++N    P +  +G ++    K      A   +  M    +  D V FN LI    Q
Sbjct: 44  FNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQ 103

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G    +F V A +  + +  +P+ IT+  L+K     GQ+ +A   +  +         
Sbjct: 104 LGHTHFSFSVFANILKKGY--EPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNK 161

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   IN   + G    A  +   +  K V P+ V  + +ID       V  AF++  E
Sbjct: 162 VCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSE 221

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             ++GIS  +++YS+L+           A+ L+  M S ++ P V T + L+   C   +
Sbjct: 222 MVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGR 281

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +   VL+ M   G+ P+ +TY  L+        V     + +   + GV  N+  +  
Sbjct: 282 VKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNI 341

Query: 450 II-GMCS-RRYEKARTL 464
           +I G C  ++ ++A  L
Sbjct: 342 MINGFCKIKKVDEAMNL 358



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 116/251 (46%), Gaps = 6/251 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  LM      K    A  +   + + G+ A+ + Y  +I    K  KVD    +
Sbjct: 299 PDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNL 358

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM    I P+V TY +LIDG  K+G+++ A      M  + V  D++ +N+++ A  +
Sbjct: 359 FKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCK 418

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK--MIHKYNIKG 267
           +  VD+A  +L +M  E   + PD  T   L+      G++  A+ +++  ++  YNI  
Sbjct: 419 NHQVDKAIALLTKMKDE--GIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNI-- 474

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   YT+ I        ++ A ++   M   G IP+      +I       + + A ++L
Sbjct: 475 TVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLL 534

Query: 328 QEAKNQGISVG 338
           +E   +G+  G
Sbjct: 535 REMIARGLLFG 545


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 179/358 (50%), Gaps = 2/358 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+ +L++       +  A QVLR ++   +  +  +Y+T+I    K   V   + ++ EM
Sbjct: 160 TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEM 219

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +   I P V T+ +LI G    G+   AF  +  M  KN+ PD   FN L+ A  + G +
Sbjct: 220 IVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKI 279

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A +V+A M  E   V+P  +T   LM       +V +A+ V  +I +  +      Y 
Sbjct: 280 KEAKNVIAVMMKE--GVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYN 337

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I IN   +    + A  ++ +M  +G+ P +V  ++LID    AG++  A+E++ E  N 
Sbjct: 338 IMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNN 397

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            I   I++Y+SL+      ++  KA+ L + +K   ++P + T N LI  LC G QL   
Sbjct: 398 CIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNA 457

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +V  D+   G   N  TY+I++    ++   +   +LLS+ +++G+IP+ V ++ II
Sbjct: 458 QDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETII 515



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 139/305 (45%), Gaps = 11/305 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G+  +   L  +M  K +      ++     +CK  K IKEA     ++      PT+ T
Sbjct: 242 GKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGK-IKEAKNVIAVMMKEGVEPTVVT 300

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N LM       +   A  VL ++    +  + + Y  +I    K   VD    +FHEM 
Sbjct: 301 YNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMC 360

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             GI P+  TY +LIDG  KAG++  A+     M +  +  D V +N+LI    ++  VD
Sbjct: 361 CRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVD 420

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK--MIHKYNIKGTPEVY 272
           +A  ++ ++    H + P+  T   L+      GQ+  A++V++  +I  YN+      Y
Sbjct: 421 KAIALVKKIKE--HGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAW--TY 476

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
            I IN   + G ++ A  +   M   G+IPD V    +I    H  + E A ++L+E   
Sbjct: 477 NIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVI 536

Query: 333 QGISV 337
           +G+ V
Sbjct: 537 KGVVV 541



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 172/414 (41%), Gaps = 47/414 (11%)

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA-EMNAEVHPVDPDHIT 236
           V  A  ++  MR     P  V FN ++T   ++   +    VL+     E   V PD  T
Sbjct: 47  VDNAVLSFNRMRQIRQTPSIVEFNKILTYLIKTK--NHYPTVLSLSTQMESKGVKPDLFT 104

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           +  L+    + GQ+  A  V+  I K  +            C +  G    A   +D + 
Sbjct: 105 LSILINCYCHLGQMTFAFSVFAKILKMGL------------CLN--GKVNEALLFHDHVL 150

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
             G   + V    LI+     G+  AA ++L++ + + ++  ++ YS+++      K   
Sbjct: 151 ALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVT 210

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            A  LY  M   ++ PTV T ++LI   C   +      + ++M    + P+  T++IL+
Sbjct: 211 DAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILV 270

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSG 474
            A  ++  ++    +++   ++GV P +V +  ++ G C      KA+    HVLS  S 
Sbjct: 271 DALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAK----HVLSIISR 326

Query: 475 RPQIEN--------------KWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPY 516
                N              K    AL ++ E    G  P     + ++  L    ++PY
Sbjct: 327 MRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPY 386

Query: 517 NADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVP 568
             ++ + +  N  + AD +  +   SLID F   ++  +A +L+++    GI P
Sbjct: 387 AWELVDEMHNNC-IPADIVTYN---SLIDVFCKNQHVDKAIALVKKIKEHGIQP 436


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 176/346 (50%), Gaps = 4/346 (1%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           D+ GA ++LR +     K + ++Y+T+I    K   V   + +F EM   GI  +V TY 
Sbjct: 179 DTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYS 238

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI G    G++ +A G    M  K + P+   +N L+ A  + G V  A  VLA M   
Sbjct: 239 TLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKA 298

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V PD IT   LM       +V +A+ V+  +    +      YTI IN   +    +
Sbjct: 299 C--VKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVD 356

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A +++ +M +K ++P  V  S+LID    +G++   ++++ E +++G    +I+YSSL+
Sbjct: 357 EALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLI 416

Query: 347 -GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
            G C N  +  +A+ L+  MK  +++P + T   L+  LC G +L    EV  D+ + G 
Sbjct: 417 DGLCKNG-HLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY 475

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             N  TY++++    ++  +E  L +LS+ +++G IPN   F+ II
Sbjct: 476 HLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETII 521



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 180/437 (41%), Gaps = 41/437 (9%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD     F+ M+     P +  +  ++D  AK    + A      +  K ++PD +  N 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI      G +   F VLA++    +P  PD +T+  L+K     GQV +A   +  +  
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYP--PDTVTLNTLIKGLCLKGQVKKALHFHDKLLA 157

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              +     Y   IN   + GD   A  +   +  +   P+    S +ID       V  
Sbjct: 158 QGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSE 217

Query: 323 AFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           A+ +  E   +GIS  +++YS+L+ G C   K  ++A+ L   M    + P V T N L+
Sbjct: 218 AYGLFSEMTVKGISADVVTYSTLIYGFCIEGK-LKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            ALC   ++ +   VL+ M    + P+ ITYS L+       +V+    + +     GV 
Sbjct: 277 DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVT 336

Query: 442 PNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 500
           P++  +  +I G C                        +NK    AL +++E      +P
Sbjct: 337 PDVHTYTILINGFC------------------------KNKMVDEALNLFKEMHQKNMVP 372

Query: 501 TVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPR 553
            +   S ++  L    ++PY  D+ + +  + G  AD +  S   SLIDG    G  D R
Sbjct: 373 GIVTYSSLIDGLCKSGRIPYVWDLIDEM-RDRGQPADVITYS---SLIDGLCKNGHLD-R 427

Query: 554 AFSLLEEAASFGIVPCV 570
           A +L  +     I P +
Sbjct: 428 AIALFNKMKDQEIRPNI 444


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 134/505 (26%), Positives = 223/505 (44%), Gaps = 62/505 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN +I    ++G + E  DL++ M   G +     Y+     +CKS + ++EA   F  
Sbjct: 82  TYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSR-VEEALLLFNE 140

Query: 85  --KLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             +L   P   + N +++ +C  SK  + A QV   ++   +  D   Y  LI   AK+G
Sbjct: 141 MERLGCTPNRRSHNTIILGLCQQSKIDQ-ACQVFHEMEAKDIPPDSWSYGILIDGLAKAG 199

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K++  +++F  M+++GI P+  TY  +I G   A  + +A   +  MRSK  +P R  FN
Sbjct: 200 KLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFN 259

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI A  + G +D AF +L  M  + H   PD +T   L+    +  +VD AR +     
Sbjct: 260 ILIDAHCKRGKLDEAFRLLKRMTDDGHV--PDVVTYSTLISGLCSIARVDDARHLL---- 313

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                                          +DM K+   P  V  + LI     AG+++
Sbjct: 314 -------------------------------EDMVKRQCKPTVVTQNTLIHGLCKAGRIK 342

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E+L    + G S  +++Y++L+     A   ++A EL   M +  L P V T  AL+
Sbjct: 343 EAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALV 402

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           + LC  ++LP+   V + MKS G  PN  TY+ L++       V+ GL L  +    G+ 
Sbjct: 403 SGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGIS 462

Query: 442 PNLVMFK------CIIGMCSRRYEKARTLNEHVLSFNSGRP--------QIENKWTSLAL 487
           P+ V++       C  G  +R  E  R   E + S   G           +E     +AL
Sbjct: 463 PDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMAL 522

Query: 488 MVYREAIVAGTIPTVEVVSKVLGCL 512
              R+ +  G +P  E  + ++  L
Sbjct: 523 GFVRDMVRGGQLPAPERCASLVAGL 547



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/442 (23%), Positives = 197/442 (44%), Gaps = 12/442 (2%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            +VS    SY  LI    + G++++  +L + +   G+      Y +    +C +  +  
Sbjct: 4   RNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMAN-SFD 62

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A   F  +      P+  T+N+++         E A  +++ + E G   D   Y T++
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               KS +V+    +F+EM   G  PN  ++  +I G  +  ++ +A   +  M +K++ 
Sbjct: 123 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIP 182

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD   +  LI    ++G ++ A+ +   M      + P  +T   ++     A  +D A 
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFQRMLDS--GITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E++K +     + +   + I I+   + G  + A  +   MT  G +PD V  S LI   
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               +V+ A  +L++   +     +++ ++L+     A   ++A E+ + M S    P V
Sbjct: 301 CSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDV 360

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N L+   C   Q  +  E+LSDM + GL PN +TY+ L+    + + +     + +Q
Sbjct: 361 VTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQ 420

Query: 435 AKEDGVIPNLVMFKC-IIGMCS 455
            K  G  PNL  +   I+G CS
Sbjct: 421 MKSSGCAPNLFTYTALILGFCS 442



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 156/317 (49%), Gaps = 10/317 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + P+  +YG LIDG AKAG++  A   +  +    V P  V + +LI     + + D A 
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE-VYKMIHKYNIKGTPEV--YTI 274
           ++ A+MN    P  P  +T   ++ A    G ++ A + + KMI   ++   P+V  Y  
Sbjct: 66  ELFADMNRRGCP--PSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHV---PDVVTYNT 120

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            ++   ++   E A  ++++M + G  P+    + +I       K++ A ++  E + + 
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I     SY  L+   + A    +A +L++ M    + P+  T N +I  +C    L + +
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           E+   M+S G  P+  T++IL+ A  ++  ++    LL +  +DG +P++V +  +I G+
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 454 CS-RRYEKARTLNEHVL 469
           CS  R + AR L E ++
Sbjct: 301 CSIARVDDARHLLEDMV 317



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 121/249 (48%), Gaps = 6/249 (2%)

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           V PD  + G L+   A AG+++ AR +++ +    +  +   YT  I+       ++ A 
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            ++ DM ++G  P  V  + +ID +   G +E A +++++    G    +++Y+++M   
Sbjct: 66  ELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 125

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
             +   ++AL L+  M+ +   P   + N +I  LC   ++ +  +V  +M++  + P++
Sbjct: 126 CKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDS 185

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHV 468
            +Y IL+    +   +     L  +  + G+ P+ V +  +I GMC      A TL+E +
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMC-----LAYTLDEAL 240

Query: 469 LSFNSGRPQ 477
             F S R +
Sbjct: 241 ELFKSMRSK 249


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/444 (27%), Positives = 217/444 (48%), Gaps = 19/444 (4%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVP 88
            L + G++    D+L+ M   G+      Y+A    +CKS + I+EA +F +       VP
Sbjct: 612  LCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGR-IEEACQFLEEMVSSGCVP 670

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            + +++  +++ ++C +S+ ++ A Q++  ++  G   D   Y  L+    KSG+ +    
Sbjct: 671  D-SITYGSLVYALCRASR-TDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAIT 728

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK---PDRVVFNALIT 205
            V  EMV  G  P+V TY  LID   KAG + +A   +G M S+  +   P+ V ++ LI 
Sbjct: 729  VLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLIN 788

Query: 206  ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
               + G +D A +++ EM  +   V P+ IT  + +        +  A E+ + +   ++
Sbjct: 789  GLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSL 848

Query: 266  KGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            + +P+  T +  I+   + G  + AC+V+DDM   G +P+ V  + L++      K+E A
Sbjct: 849  RVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERA 908

Query: 324  FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
              +++   ++G++  +I+YS L+ A   A +  +ALEL   M S    P V T N++I  
Sbjct: 909  HAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDG 968

Query: 384  LCDGDQLPKTMEVLSDMK-SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC  DQ  +  ++  DM    GL P+ ITY  L+    R        +LL    +    P
Sbjct: 969  LCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD----P 1024

Query: 443  NLVMFKCIIGMCSRRYEKARTLNE 466
            +   F C I   S+  + +R L+ 
Sbjct: 1025 DTYAFNCCINGLSKLGDVSRALHR 1048



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 222/458 (48%), Gaps = 26/458 (5%)

Query: 24  DVSEQLHSYNR----LIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFN-VCKSQKA 76
           DV   + +YN     L +Q   +E  +L+  + R G L +  D V  +   + +CK  + 
Sbjct: 318 DVLPNIITYNSFLDGLCKQSMTAEACELMRSL-RDGSLRVSPDTVTFSTLIDGLCKCGQ- 375

Query: 77  IKEAFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           I EA   F        VPN  + T+N L++    +   E A  ++  + + G+  D   Y
Sbjct: 376 IDEACSVFDDMIAGGYVPN--VITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITY 433

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           + L+    K+ +VD   E+ H M + G  PNV T+ ++IDG  K+ +  +AF  +  M  
Sbjct: 434 SVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMAL 493

Query: 191 KN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           K+ + PD++ +  LI    ++G   +A  +L  M       DPD       +   +  G 
Sbjct: 494 KHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMP------DPDTYAFNCCINGLSKLGD 547

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           V RA +VY  + +  +      + I I    + G++E A +++++M  K + PD +   A
Sbjct: 548 VSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGA 607

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LID    AG+VEAA +IL    N G+   +++Y++L+     +   ++A +  E M S  
Sbjct: 608 LIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG 667

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P   T  +L+ ALC   +    ++++S++KS G  P+T+TY+IL+    +    E  +
Sbjct: 668 CVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAI 727

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLN 465
            +L +    G  P++V +  +I  +C +   E+AR L+
Sbjct: 728 TVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLH 765



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 144/579 (24%), Positives = 256/579 (44%), Gaps = 37/579 (6%)

Query: 14  PNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           P  KH  ++ +        N L++ G  ++ IDL               Y        K+
Sbjct: 105 PGFKHTIFSFN-----KYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKA 159

Query: 74  QKAIKEAFRFFKLVPNPT--LSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLY 130
              ++    FF+ + + +  ++ +N+++     + ++  A ++ R  +   G+      Y
Sbjct: 160 GGDVERTLGFFRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTY 219

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            T+I    KS ++ A  E+F E+V  G  P+V TY  LID   KAG + +A   +G M S
Sbjct: 220 NTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSS 279

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           ++  P+ V ++ LI    + G +D A +++ EM  +   V P+ IT  + +         
Sbjct: 280 RSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMT 339

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
             A E+ + +   +++ +P+  T +  I+   + G  + ACSV+DDM   G +P+ +  +
Sbjct: 340 AEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYN 399

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           AL++    A K+E A  +++   ++G++  +I+YS L+ A   A    +ALEL   M S 
Sbjct: 400 ALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASR 459

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLCPNTITYSILLVACERKDDVEV 427
              P V T N++I  LC  D+  +  ++  DM    GL P+ ITY  L+    R      
Sbjct: 460 GCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQ 519

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH-----------VLSFN---S 473
              LL    +    P+   F C I   S+  + +R L  +            ++FN   +
Sbjct: 520 AEALLDAMPD----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIA 575

Query: 474 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLG 529
           G  +  N   + AL  + E +     P V     ++  L    Q+    DI + L+ NLG
Sbjct: 576 GACKAGNFEQASAL--FEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILD-LMGNLG 632

Query: 530 VSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
           V  + +  + L   +   G  +  A   LEE  S G VP
Sbjct: 633 VPPNVVTYNALVHGLCKSGRIE-EACQFLEEMVSSGCVP 670



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 139/574 (24%), Positives = 252/574 (43%), Gaps = 42/574 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L +  ++     ++E M  KG+      Y       CK+ + + EA      + +   
Sbjct: 403 NGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR-VDEALELLHGMASRGC 461

Query: 90  -PTLSTFNMLM-SVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            P + TFN ++  +C S +  E AFQ+   +  + GL  D   Y TLI    ++G+    
Sbjct: 462 TPNVVTFNSIIDGLCKSDRSGE-AFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQA 520

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
                 +++A  +P+ + +   I+G +K G V++A   Y  M    + PD+V FN LI  
Sbjct: 521 ----EALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAG 576

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             ++G  ++A  +  EM A+   + PD +T GAL+     AGQV+ AR++  ++    + 
Sbjct: 577 ACKAGNFEQASALFEEMVAK--NLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVP 634

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y   ++   ++G  E AC   ++M   G +PD +   +L+     A + + A ++
Sbjct: 635 PNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQL 694

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           + E K+ G     ++Y+ L+     +   ++A+ + E M      P V T N LI +LC 
Sbjct: 695 VSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCK 754

Query: 387 GDQLPKTMEVLSDMKS-LGLC--PNTITYSILLVACERKDDVEVGLMLLSQA--KEDGVI 441
              L +   +  DM S +  C  PN +TYS+L+    +   ++    L+ +   K   V+
Sbjct: 755 AGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVL 814

Query: 442 PNLVMFKCII-GMCSRRY-----EKARTLNEHVLSFNSGRPQIEN--------KWTSLAL 487
           PN++ +   + G+C +       E  R+L +  L  +                  T  A 
Sbjct: 815 PNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEAC 874

Query: 488 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLI 544
            V+ + I  G +P V   + ++  L      +    ++E++   GV+ D +  S    L+
Sbjct: 875 NVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYS---VLV 931

Query: 545 DGF--GEYDPRAFSLLEEAASFGIVP-CVSFKEI 575
           D F    +   A  LL   AS G  P  V+F  I
Sbjct: 932 DAFCKASHVDEALELLHGMASRGCTPNVVTFNSI 965



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 183/488 (37%), Gaps = 119/488 (24%)

Query: 25   VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AI 77
            V   + +YN L+    + GRI E    LE+M   G +     Y +  + +C++ +   A+
Sbjct: 633  VPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDAL 692

Query: 78   KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            +          +P   T+N+L+     S  +E A  VL  +   G   D   Y TLI + 
Sbjct: 693  QLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSL 752

Query: 138  AKSG--------------------------------------KVDAMFEVFHEMVNAGIE 159
             K+G                                      ++D   E+  EM+    +
Sbjct: 753  CKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCD 812

Query: 160  --PNVHTYGALIDGCAKAGQVAKAFGAYGIMR--SKNVKPDRVVFNALITACGQSGAVDR 215
              PN+ TY + +DG  K   +A+A      +R  S  V PD V F+ LI    + G  D 
Sbjct: 813  VLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDE 872

Query: 216  AFDVLAEMNA------------------------EVHP---------VDPDHITIGALMK 242
            A +V  +M A                          H          V PD IT   L+ 
Sbjct: 873  ACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVD 932

Query: 243  ACANAGQVDRAREVYKMIHKYNIKG-TPEVYT---IAINCCSQTGDWEFACSVYDDMT-K 297
            A   A  VD A E   ++H    +G TP V T   I    C      E A  ++DDMT K
Sbjct: 933  AFCKASHVDEALE---LLHGMASRGCTPNVVTFNSIIDGLCKSDQSGE-AFQMFDDMTLK 988

Query: 298  KGVIPDEVFLSALID---FAGHAGKVEAAFEILQEAKNQGISVGI--------------- 339
             G+ PD++    LID     G AG+ E   + + +      +  I               
Sbjct: 989  HGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHR 1048

Query: 340  ----------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                      ++++ L+     A N+++A  L+E M +  L+P V T  ALI  LC   Q
Sbjct: 1049 MLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQ 1108

Query: 390  LPKTMEVL 397
            +  T +++
Sbjct: 1109 VEATWDIM 1116


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 207/412 (50%), Gaps = 14/412 (3%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SV 101
           + ++M  KG    +  Y      +C  ++ I EA   F  + +    PT+ T+ +L+ ++
Sbjct: 275 VFKEMPLKGCRRNEVAYTHLIHGLC-VERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKAL 333

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
           C S + SE A  +++ ++E G+K +   YT LI +     K++   E+  +M+  G+ PN
Sbjct: 334 CGSERKSE-ALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPN 392

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSGAVDRAFDVL 220
           V TY ALI+G  K G +  A     +M S+N++P+   +N LI   C ++  V +A  VL
Sbjct: 393 VITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN--VHKAMGVL 450

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
            +M      V PD +T  +L+     +G  D A  +  +++   +   P  YT  I+   
Sbjct: 451 NKMLE--RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLC 508

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           ++   E AC ++D + +K VIP+ V  +ALID    AGKV  A  +L++  ++      +
Sbjct: 509 KSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSL 568

Query: 341 SYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++++L+ G C++ K  ++A  L E M  I L+PTVST   LI  L               
Sbjct: 569 TFNALIHGLCTDGK-LKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQ 627

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           M S G  P+  TY+  +    R+  ++    ++++ KE+GV P+L  +  +I
Sbjct: 628 MLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLI 679



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 127/511 (24%), Positives = 219/511 (42%), Gaps = 72/511 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--QKAIKEAFRFF 84
           +YN LI    ++G I + +D++E ME + L    + Y+      CK    KA+    +  
Sbjct: 395 TYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKML 454

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +    P + T+N L+     S + + A+++L L+ + GL  D   YT++I +  KS +V+
Sbjct: 455 ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVE 514

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++F  +    + PNV  Y ALIDG  KAG+V +A      M SKN  P+ + FNALI
Sbjct: 515 EACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALI 574

Query: 205 TACGQSGAVDRAFDVLAEM-NAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
                 G +  A  +  +M   ++ P V  D I I  L+K     G  D A   ++ +  
Sbjct: 575 HGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKD----GDFDHAYRRFQQMLS 630

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              K     YT  I    + G  + A  +   M + GV PD    S+LI   G  G+  +
Sbjct: 631 SGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNS 690

Query: 323 AFEILQE-------------------------AKNQGISVGIISYSSLM----------- 346
           AF +L+                           K +G   G+   S++M           
Sbjct: 691 AFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEK 750

Query: 347 ----GACSNAKNWQK-------------ALELYEHMKSIK-LKPTVSTMNALITALCDGD 388
               G   NAK+++K             A ++++HM+  + + P+    NAL++  C  +
Sbjct: 751 MVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLE 810

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  +  +V+ DM  +G  P   +  IL+    +K + E G  +     + G   + + +K
Sbjct: 811 KHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWK 870

Query: 449 CII------GMCSRRYEKARTLNEHVLSFNS 473
            II      G+    YE    + ++  +F+S
Sbjct: 871 IIIDGVGKQGLVEAFYELFNVMEKNGCTFSS 901



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/460 (22%), Positives = 208/460 (45%), Gaps = 33/460 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +   +H+Y  LI     Q ++ +  +LL  M  KGL+     Y+A     CK +  I++A
Sbjct: 354 IKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCK-RGMIEDA 412

Query: 81  FRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               +L+ +    P   T+N L+   C   ++   A  VL  + E  +  D   Y +LI 
Sbjct: 413 LDVVELMESRNLRPNTRTYNELIKGYC--KRNVHKAMGVLNKMLERKVLPDVVTYNSLID 470

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              +SG  D+ + +   M + G+ P+  TY ++ID   K+ +V +A   +  +  K+V P
Sbjct: 471 GQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIP 530

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + V++ ALI    ++G V+ A  +L +M ++     P+ +T  AL+      G++  A  
Sbjct: 531 NVVMYTALIDGYCKAGKVNEAHLMLEKMLSK--NCLPNSLTFNALIHGLCTDGKLKEATL 588

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + + + K +++ T    TI I+   + GD++ A   +  M   G  PD    +  I    
Sbjct: 589 LEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYC 648

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+++ A +++ + K  G+S  + +YSSL+    +      A  + + M     +P+  
Sbjct: 649 REGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQH 708

Query: 376 TMNALITALCD--------GD----------QLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           T  +LI  L +        G+          +    +E+L  M   G+ PN  +Y  L++
Sbjct: 709 TFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLML 768

Query: 418 ACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSR 456
                 ++ V   +    ++ +G+ P+ ++F  ++  C +
Sbjct: 769 GICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCK 808



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 111/498 (22%), Positives = 211/498 (42%), Gaps = 27/498 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N +++      + E A Q + ++ EAGL  D   YT+LI    +   +D+ F+V
Sbjct: 216 PNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   G   N   Y  LI G     ++ +A   +  M+  +  P    +  LI A   
Sbjct: 276 FKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCG 335

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           S     A +++ EM  E   + P+  T   L+ +  +  ++++ARE+   + +  +    
Sbjct: 336 SERKSEALNLVKEM--EEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNV 393

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQ 328
             Y   IN   + G  E A  V + M  + + P+    + LI   G+  + V  A  +L 
Sbjct: 394 ITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELI--KGYCKRNVHKAMGVLN 451

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +   + +   +++Y+SL+     + N+  A  L   M    L P   T  ++I +LC   
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSK 511

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ +  ++   ++   + PN + Y+ L+    +   V    ++L +      +PN + F 
Sbjct: 512 RVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFN 571

Query: 449 CII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV-----------YREAIVA 496
            +I G+C+    K  TL E  +     +P +      +  ++           +++ + +
Sbjct: 572 ALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSS 631

Query: 497 GTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEY-- 550
           GT P     +  +       +L    D+  ++ EN GVS D    S   SLI G+G+   
Sbjct: 632 GTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKEN-GVSPDLFTYS---SLIKGYGDLGR 687

Query: 551 DPRAFSLLEEAASFGIVP 568
              AF +L+     G  P
Sbjct: 688 TNSAFVVLKRMHDTGCEP 705



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 152/385 (39%), Gaps = 65/385 (16%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           DV   +  Y  LI    + G+++E   +LE M  K  L     ++A    +C   K +KE
Sbjct: 527 DVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGK-LKE 585

Query: 80  AF----RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A     +  K+   PT+ST  +L+       D + A++  + +  +G K D   YTT I 
Sbjct: 586 ATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQ 645

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
           T  + G++    ++  +M   G+ P++ TY +LI G    G+   AF     M     +P
Sbjct: 646 TYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEP 705

Query: 196 DRVVFNALIT----------------ACGQSGAVDRAFDVLAEMNAEV--HPVDPDHITI 237
            +  F +LI                  C  S  ++  FD++ E+  ++  H V P+  + 
Sbjct: 706 SQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMME--FDIVVELLEKMVEHGVTPNAKSY 763

Query: 238 GALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             LM      G +  A +V+  M  K  I  +  V+   ++CC +      A  V DDM 
Sbjct: 764 EKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMI 823

Query: 297 KKGVIP-----------------------------------DEVFLSALIDFAGHAGKVE 321
             G +P                                   DE+    +ID  G  G VE
Sbjct: 824 CVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVE 883

Query: 322 AAFEILQEAKNQGISVGIISYSSLM 346
           A +E+    +  G +    +YS L+
Sbjct: 884 AFYELFNVMEKNGCTFSSQTYSLLI 908



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 144/333 (43%), Gaps = 13/333 (3%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y +L+T    +G V  +F++   M+ +    +V     ++D C K  +       Y ++ 
Sbjct: 126 YASLLTLLINNGYVGVVFKIRLLMIKSC--DSVADTLFVLDLCRKMNKDESFELKYKLII 183

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
                     +N L+ +  + G VD    V  EM  +   V P+  T   ++      G 
Sbjct: 184 G--------CYNTLLNSLARFGLVDEMKQVYMEMLED--KVCPNIYTYNKMVNGYCKVGN 233

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           V+ A +   MI +  +      YT  I    Q  D + A  V+ +M  KG   +EV  + 
Sbjct: 234 VEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTH 293

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI       +++ A ++  + K+      + +Y+ L+ A   ++   +AL L + M+   
Sbjct: 294 LIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKG 353

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           +KP + T   LI +LC   +L K  E+L  M   GL PN ITY+ L+    ++  +E  L
Sbjct: 354 IKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAL 413

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKA 461
            ++   +   + PN   +  +I G C R   KA
Sbjct: 414 DVVELMESRNLRPNTRTYNELIKGYCKRNVHKA 446



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 136/308 (44%), Gaps = 23/308 (7%)

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           N   + +V++Y +L+      G V   F    +M               I +C       
Sbjct: 116 NPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLM---------------IKSCDSVADTL 160

Query: 215 RAFDVLAEMNAEVHPVDPDHITIG---ALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
              D+  +MN +        + IG    L+ + A  G VD  ++VY  +     K  P +
Sbjct: 161 FVLDLCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVY--MEMLEDKVCPNI 218

Query: 272 YTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           YT    +N   + G+ E A      + + G+ PD    ++LI        +++AF++ +E
Sbjct: 219 YTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKE 278

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G     ++Y+ L+      +   +A++L+  MK     PTV T   LI ALC  ++
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSER 338

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             + + ++ +M+  G+ PN  TY++L+ +   +  +E    LL Q  E G++PN++ +  
Sbjct: 339 KSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNA 398

Query: 450 II-GMCSR 456
           +I G C R
Sbjct: 399 LINGYCKR 406


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 176/345 (51%), Gaps = 2/345 (0%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           ++  A Q+LR +    +K +  +Y T+I +  K   V   +E++ +M+   I P+V T+ 
Sbjct: 188 ETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFS 247

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           ALI G    GQ+ +AFG +  M  KN+ PD   FN L+ A  + G +  A ++L  M  E
Sbjct: 248 ALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKE 307

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V P+ +T  +LM       QV++A+ V   I +         Y   IN   +    +
Sbjct: 308 --GVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVD 365

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A S+++DM  KG+ PD+V  ++LID    +G++  A+E++ E  + G    I +Y+ L+
Sbjct: 366 EALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLI 425

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A     +  +A+ L + +K   ++P + T N LI  LC   +L    +V  D+ S G  
Sbjct: 426 DALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYS 485

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            N  TY+I++    ++   +    LLS+  ++G+IP+ V ++ +I
Sbjct: 486 VNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLI 530



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/435 (22%), Positives = 188/435 (43%), Gaps = 45/435 (10%)

Query: 88  PNPTLSTFNMLMSVCASSKDSE--GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           P  ++  FN ++     S ++    A  + R ++  G+  D   +  LI       +++ 
Sbjct: 62  PTSSIIEFNKILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNF 121

Query: 146 MFEVFHEMVNAGIEPNVHT-----------------------------------YGALID 170
            F +  +++  G EP+  T                                   YG LI+
Sbjct: 122 AFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLIN 181

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G  K G+   A      +  K VK + V++N +I +  +   V  A+++ ++M A+   +
Sbjct: 182 GLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAK--KI 239

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD +T  AL+      GQ++ A  +++ +   NI      + I ++   + G+ + A +
Sbjct: 240 SPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKN 299

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +   M K+GV+P+ V  S+L+D      +V  A  +L      G +    SY +++    
Sbjct: 300 MLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFC 359

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
             K   +AL L+  M+   + P   T N+LI  LC   ++    E++ +M   G   N  
Sbjct: 360 KIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIF 419

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHV 468
           TY+ L+ A  +   V+  + L+ + K+ G+ P++  F  +I G+C   R + A+ + + +
Sbjct: 420 TYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDL 479

Query: 469 LSFNSGRPQIENKWT 483
           LS    +    N WT
Sbjct: 480 LS----KGYSVNAWT 490



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 139/295 (47%), Gaps = 10/295 (3%)

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           ++EAF  F+ +     NP   TFN+L+       + +GA  +L ++ + G+  +   Y++
Sbjct: 259 LEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSS 318

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+       +V+    V + +   G  PN H+Y  +I+G  K   V +A   +  M+ K 
Sbjct: 319 LMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKG 378

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + PD+V +N+LI    +SG +  A++++ EM+    P +    T   L+ A      VD+
Sbjct: 379 IAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANI--FTYNCLIDALCKNHHVDQ 436

Query: 253 AREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           A  + K I    I+  P++YT  I I    + G  + A  V+ D+  KG   +    + +
Sbjct: 437 AIALVKKIKDQGIQ--PDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIM 494

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           ++     G  + A  +L +  + GI    ++Y +L+ A  +    +KA +L   M
Sbjct: 495 VNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREM 549



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 9/205 (4%)

Query: 30  HSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           HSY    N   +   + E + L  DM+ KG+      Y++    +CKS + I  A+    
Sbjct: 349 HSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGR-ISYAWELVD 407

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + +      + T+N L+     +   + A  +++ +++ G++ D   +  LI    K G
Sbjct: 408 EMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVG 467

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++    +VF ++++ G   N  TY  +++G  K G   +A      M    + PD V + 
Sbjct: 468 RLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYE 527

Query: 202 ALITACGQSGAVDRAFDVLAEMNAE 226
            LI A       ++A  +L EM A 
Sbjct: 528 TLIQALFHKDENEKAEKLLREMIAR 552


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 186/394 (47%), Gaps = 11/394 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   TF +L+     S   E A Q+L  ++E G   D  +Y  LI+  +K+      F+
Sbjct: 7   QPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFK 66

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EMV     P V TY  ++DG  KAG+   A      MR K   P+   +N ++    
Sbjct: 67  FLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLC 126

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +D A  +L EM   V    PD +T  + +K      +VD AR   K + +  +  T
Sbjct: 127 EERKLDEAKKMLEEM--AVRGYFPDVVTYNSFIKGLCKCDRVDEAR---KFLARMPV--T 179

Query: 269 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+V  YT  IN   ++GD + A  + D MT +G  PD V  S+LID     G+VE A  +
Sbjct: 180 PDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGL 239

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L      G    +++Y+SL+GA     +  KA ++   M+     P V + NA I  LC 
Sbjct: 240 LDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCK 299

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
            +++ K   V   M   G  PN  +YS+L+    +K +++  + L+ QA+E   I ++++
Sbjct: 300 AERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILL 359

Query: 447 FKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI 478
           +  ++ G+C   R+++A  L   VL      P +
Sbjct: 360 YTVLLDGLCKGGRFDEACALFSKVLDEKICEPDV 393



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 155/322 (48%), Gaps = 13/322 (4%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M++   +P+  T+  L+ G  ++ Q+ KA    G M+     PD  ++NALI+   ++  
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV 271
             +AF  LAEM  + H + P  +T   ++     AG   R ++  K++ +   KG +P +
Sbjct: 61  FGQAFKFLAEM-VKNHCL-PTVVTYTNIVDGLCKAG---RTKDAVKLLDEMRDKGCSPNI 115

Query: 272 YT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           YT  + +    +    + A  + ++M  +G  PD V  ++ I       +V+ A + L  
Sbjct: 116 YTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLAR 175

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                ++  ++SY++++     + +   A  + + M +    P V T ++LI   C G +
Sbjct: 176 MP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGE 232

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK- 448
           + + M +L  M  LG  PN + Y+ LL A  R   +     +L + +  G  P++V +  
Sbjct: 233 VERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNA 292

Query: 449 CIIGMC-SRRYEKARTLNEHVL 469
           CI G+C + R +KA+ + + ++
Sbjct: 293 CIDGLCKAERVKKAKAVFDRMV 314



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/442 (20%), Positives = 183/442 (41%), Gaps = 65/442 (14%)

Query: 26  SEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  +++YN ++     + ++ E   +LE+M  +G       Y++    +CK  + + EA 
Sbjct: 112 SPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDR-VDEAR 170

Query: 82  RFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +F   +P  P + ++  +++    S D + A ++L  +   G   D   Y++LI    K 
Sbjct: 171 KFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKG 230

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+V+    +   M+  G  PN+  Y +L+    + G + KA      M  +   PD V +
Sbjct: 231 GEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSY 290

Query: 201 NALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD------ 251
           NA I    ++  V +A   FD + E         P+  +   L++      ++D      
Sbjct: 291 NACIDGLCKAERVKKAKAVFDRMVERGCT-----PNASSYSMLVEELCKKKELDDAITLV 345

Query: 252 -RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSA 309
            +ARE Y+++          +YT+ ++   + G ++ AC+++  +  + +  PD  F + 
Sbjct: 346 EQAREKYQIVDIL-------LYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNV 398

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           ++D      +++ A +I ++   +               C N   W              
Sbjct: 399 MLDSHCKRRQIDKALQIHKQMLERN--------------CCNVVTW-------------- 430

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
                   N L+  LC  D+L     +L  M   G  P+ +TY  L+ A  +       L
Sbjct: 431 --------NILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAAL 482

Query: 430 MLLSQAKEDGVIPNLVMFKCII 451
            L  +A + G +P++V +  +I
Sbjct: 483 ELFEEAVKGGCVPDVVTYSALI 504



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 136/376 (36%), Gaps = 79/376 (21%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G I +  D+L +MER+G       Y+A    +CK+++  K    F ++
Sbjct: 254 AYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRM 313

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V     P  S+++ML+      K+ + A  ++   +E     D  LYT L+    K G+ 
Sbjct: 314 VERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRF 373

Query: 144 DAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN---------- 192
           D    +F ++++  I EP+V  Y  ++D   K  Q+ KA   +  M  +N          
Sbjct: 374 DEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNIL 433

Query: 193 ------------------------VKPDRVVFNALITA---CGQSGAVDRAFDVLAEMNA 225
                                     PD V +  L+ A   CG+S A    F+      A
Sbjct: 434 VHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFE-----EA 488

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYK---------MIHKYNIKGT-------- 268
                 PD +T  AL+    +    + A  ++          MI  Y   G+        
Sbjct: 489 VKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLGLKLF 548

Query: 269 ---------PEVYTIAINCCSQTGDWEF---ACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
                    P   T       +    E    A  ++D   K G  PD    + LID    
Sbjct: 549 VELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAK 608

Query: 317 AGKVEAAFEILQEAKN 332
            G +E A  I    K 
Sbjct: 609 CGDLEEARRIFYSMKQ 624


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 172/346 (49%), Gaps = 4/346 (1%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           D+  A + LR +     K D  +Y T+I    K   V   + +F EM   GI  +V TY 
Sbjct: 179 DTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYN 238

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI G    G++ +A G    M  K + P+   +N L+ A  + G V  A  VLA M   
Sbjct: 239 TLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKA 298

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V PD IT   LM       +V +A+ V+  +    +      YTI IN   +    +
Sbjct: 299 C--VKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVD 356

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A +++ +M +K ++P  V  S+LID    +G++   ++++ E +++G    +I+YSSL+
Sbjct: 357 EALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLI 416

Query: 347 -GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
            G C N  +  +A+ L+  MK  +++P + T   L+  LC G +L    EV  D+ + G 
Sbjct: 417 DGLCKNG-HLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGY 475

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             N  TY++++    ++  +E  L +LS+ +++G IPN   F+ II
Sbjct: 476 HLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETII 521



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 179/437 (40%), Gaps = 41/437 (9%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD     F+ M+     P +  +  ++D  AK    + A      +  K ++PD +  N 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI      G +   F VLA++    +P  PD +T+  L+K     GQV +A   +  +  
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYP--PDTVTLNTLIKGLCLKGQVKKALHFHDKLLA 157

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              +     Y   IN   + GD   A      +  +   PD V  + +ID       V  
Sbjct: 158 QGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSE 217

Query: 323 AFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           A+ +  E   +GIS  +++Y++L+ G C   K  ++A+ L   M    + P V T N L+
Sbjct: 218 AYGLFSEMAVKGISADVVTYNTLIYGFCIVGK-LKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            ALC   ++ +   VL+ M    + P+ ITYS L+       +V+    + +     GV 
Sbjct: 277 DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVT 336

Query: 442 PNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 500
           P++  +  +I G C                        +NK    AL +++E      +P
Sbjct: 337 PDVHTYTILINGFC------------------------KNKMVDEALNLFKEMHQKNMVP 372

Query: 501 TVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPR 553
            +   S ++  L    ++ Y  D+ + +  + G  AD +  S   SLIDG    G  D R
Sbjct: 373 GIVTYSSLIDGLCKSGRISYVWDLIDEM-RDRGQPADVITYS---SLIDGLCKNGHLD-R 427

Query: 554 AFSLLEEAASFGIVPCV 570
           A +L  +     I P +
Sbjct: 428 AIALFNKMKDQEIRPNI 444


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 193/431 (44%), Gaps = 13/431 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L + GRI   + + + ME +GL   + VY A    +CK++K   A++   +  K    P 
Sbjct: 136 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 195

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM-FEVF 150
             T+N+L+     S D E A      + EAG K D   Y  LI+   K+G  DA    + 
Sbjct: 196 TITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLA 255

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            E    G   ++HTY A++D  AK  ++ +A      + +    P    +NAL+    + 
Sbjct: 256 QETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKM 315

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP- 269
           G ++ A D+L ++    +   PD +T  +L+      G+  R+ E YK+  +  ++G   
Sbjct: 316 GRLEEAIDLLRKIVD--NGCTPDVVTYTSLIDG---LGKEKRSFEAYKLFKEMALRGLAL 370

Query: 270 --EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  I    QTG    A SVY  MT  G +PD V LS +ID    AG++ AA  I 
Sbjct: 371 DTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIF 430

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +  + +G++   + YS+L+     A+    ALE+   MK     P   T N LI  LC  
Sbjct: 431 KSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 490

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             +        +M   G  P+  TY+IL+    +  + +    +           N+V +
Sbjct: 491 GDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTY 550

Query: 448 KCII-GMCSRR 457
             +I G+C RR
Sbjct: 551 GALISGLCKRR 561



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 203/461 (44%), Gaps = 48/461 (10%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTF 95
           +I E + L+E +   G       Y+A    +CK  + ++EA     K+V N   P + T+
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGR-LEEAIDLLRKIVDNGCTPDVVTY 59

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
             L+      K S  A+++ + +   GL  D   YT LI    ++GK+     V+  M +
Sbjct: 60  TSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTS 119

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G  P+V T   +IDG +KAG++  A   +  M ++ + P+ VV++ALI    ++  +D 
Sbjct: 120 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDC 179

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT-- 273
           A ++LA+M        PD IT   L+     +G V+ AR  +  + +   K  P+VYT  
Sbjct: 180 ALEMLAQMKKAF--CTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCK--PDVYTYN 235

Query: 274 ----------------------IAINCC-------SQTGDW-------EFACSVYDDMTK 297
                                   IN C       +   DW       E A ++ + +T 
Sbjct: 236 ILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITA 295

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G  P     +AL++     G++E A ++L++  + G +  +++Y+SL+      K   +
Sbjct: 296 NGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFE 355

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A +L++ M    L        ALI  L    ++P+   V   M S G  P+ +T S ++ 
Sbjct: 356 AYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMID 415

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
              +   +   + +    +  G+ PN V++  +I G+C  R
Sbjct: 416 GLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 456



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 162/382 (42%), Gaps = 42/382 (10%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P    +NAL+    + G ++ A D+L ++    +   PD +T  +L+      G+  R+ 
Sbjct: 19  PTIATYNALLNGLCKMGRLEEAIDLLRKIVD--NGCTPDVVTYTSLIDG---LGKEKRSF 73

Query: 255 EVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           E YK+  +  ++G       YT  I    QTG    A SVY  MT  G +PD V LS +I
Sbjct: 74  EAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI 133

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D    AG++ AA  I +  + +G++   + YS+L+     A+    ALE+   MK     
Sbjct: 134 DGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT 193

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P   T N LI  LC    +        +M   G  P+  TY+IL+    +  + +     
Sbjct: 194 PDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHS 253

Query: 432 LSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 490
           L+Q    +G   ++  +  I+   ++                       NK    A+ + 
Sbjct: 254 LAQETTINGCTIDIHTYTAIVDWLAK-----------------------NKKIEEAVALM 290

Query: 491 REAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDG 546
            +    G  PT+   + +L  L    +L    D+  ++V+N G + D +  +   SLIDG
Sbjct: 291 EKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN-GCTPDVVTYT---SLIDG 346

Query: 547 FGEYDP--RAFSLLEEAASFGI 566
            G+      A+ L +E A  G+
Sbjct: 347 LGKEKRSFEAYKLFKEMALRGL 368


>gi|299473414|emb|CBN77812.2| conserved unknown protein (Partial) [Ectocarpus siliculosus]
          Length = 1130

 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 172/364 (47%), Gaps = 15/364 (4%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P+L T+N L+ VC  +K+ + AF++L  + E  +K D   +   I+ C K  +      +
Sbjct: 717  PSLDTYNRLLGVCEKNKEWDRAFKILDEMSELAIKPDIVSFGAAISACGKGLEWRRALAL 776

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
               M + GIEPN+  +  +I G   AG+  +A     ++    + PD   +N++  A   
Sbjct: 777  LVRMQHDGIEPNLQCFNNVIHGLGLAGEWKRAEAMMEVIHKTGLVPDSYTYNSMAMAYAS 836

Query: 210  SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            +G  D A DVL  M  E + V PD +T G LMKAC   G     R +   + +  I  T 
Sbjct: 837  AGESDMALDVLDTM--EKNGVQPDKVTYGTLMKACDGEGAFSIMRSLMDEMEQRGIPMTV 894

Query: 270  EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
              YT  I+  ++         ++  M  KGV P+    SA+I  A     V  A  +L+E
Sbjct: 895  HHYTTCIDAANRMEGTGMGWELWRQMGVKGVEPNNYAYSAIITTAAIDRDVRTALRLLEE 954

Query: 330  AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             K +GIS+ ++SY+S + AC    +W  AL++ E M    + P + +  A + A   G++
Sbjct: 955  MKTKGISIDVVSYTSAICAC--GPDWLLALDVLEEMDKDGVAPNLLSFTAAMGACFKGEE 1012

Query: 390  LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD-----------VEVGLMLLSQAKED 438
              + + V + MK+ G+ P+   Y++ ++A +  ++            E GL L  +  E 
Sbjct: 1013 PREVINVFNRMKAAGVAPDLRAYNLAIMAHDADENHYGRASLEAELTEAGLSLQDKEWET 1072

Query: 439  GVIP 442
              +P
Sbjct: 1073 AWVP 1076



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 177/382 (46%), Gaps = 10/382 (2%)

Query: 90   PTLSTFNMLMSVCASSKDSE-GA-----FQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            PT   +  ++ + + S+D+E GA      ++LR  QE  L      + T++T    +G+V
Sbjct: 641  PTAGEYRSMLHILSHSRDAERGANWERSMELLREAQENELPISESSFQTVMTDLGFAGEV 700

Query: 144  DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
            D  F ++ +M  AGI P++ TY  L+  C K  +  +AF     M    +KPD V F A 
Sbjct: 701  DLAFSIYDDMRMAGIPPSLDTYNRLLGVCEKNKEWDRAFKILDEMSELAIKPDIVSFGAA 760

Query: 204  ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
            I+ACG+     RA  +L  M  +   ++P+      ++     AG+  RA  + ++IHK 
Sbjct: 761  ISACGKGLEWRRALALLVRMQHD--GIEPNLQCFNNVIHGLGLAGEWKRAEAMMEVIHKT 818

Query: 264  NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             +      Y       +  G+ + A  V D M K GV PD+V    L+      G     
Sbjct: 819  GLVPDSYTYNSMAMAYASAGESDMALDVLDTMEKNGVQPDKVTYGTLMKACDGEGAFSIM 878

Query: 324  FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
              ++ E + +GI + +  Y++ + A +  +      EL+  M    ++P     +A+IT 
Sbjct: 879  RSLMDEMEQRGIPMTVHHYTTCIDAANRMEGTGMGWELWRQMGVKGVEPNNYAYSAIITT 938

Query: 384  LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
                  +   + +L +MK+ G+  + ++Y+  + AC    D  + L +L +  +DGV PN
Sbjct: 939  AAIDRDVRTALRLLEEMKTKGISIDVVSYTSAICAC--GPDWLLALDVLEEMDKDGVAPN 996

Query: 444  LVMFKCIIGMCSRRYEKARTLN 465
            L+ F   +G C +  E    +N
Sbjct: 997  LLSFTAAMGACFKGEEPREVIN 1018



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/355 (19%), Positives = 142/355 (40%), Gaps = 25/355 (7%)

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           +R+ ++L E      P+     +   +M     AG+VD A  +Y  +    I  + + Y 
Sbjct: 666 ERSMELLREAQENELPIS--ESSFQTVMTDLGFAGEVDLAFSIYDDMRMAGIPPSLDTYN 723

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             +  C +  +W+ A  + D+M++  + PD V   A I   G   +   A  +L   ++ 
Sbjct: 724 RLLGVCEKNKEWDRAFKILDEMSELAIKPDIVSFGAAISACGKGLEWRRALALLVRMQHD 783

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI   +  +++++     A  W++A  + E +    L P   T N++  A     +    
Sbjct: 784 GIEPNLQCFNNVIHGLGLAGEWKRAEAMMEVIHKTGLVPDSYTYNSMAMAYASAGESDMA 843

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           ++VL  M+  G+ P+ +TY  L+ AC+ +    +   L+ + ++ G+   +  +   I  
Sbjct: 844 LDVLDTMEKNGVQPDKVTYGTLMKACDGEGAFSIMRSLMDEMEQRGIPMTVHHYTTCIDA 903

Query: 454 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQ 513
            +R                     +E   T +   ++R+  V G  P     S ++    
Sbjct: 904 ANR---------------------MEG--TGMGWELWRQMGVKGVEPNNYAYSAIITTAA 940

Query: 514 LPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
           +  +     RL+E +     ++   +  S I   G     A  +LEE    G+ P
Sbjct: 941 IDRDVRTALRLLEEMKTKGISIDVVSYTSAICACGPDWLLALDVLEEMDKDGVAP 995


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 223/505 (44%), Gaps = 62/505 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN +I    ++G + E  DL++ M   G +     Y+     +CKS + ++EA   F  
Sbjct: 82  TYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGR-VEEALLLFNE 140

Query: 85  --KLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             +L   P   + N +++ +C  SK  + A QV   ++   +  D   Y  LI   AK+G
Sbjct: 141 MERLGCTPNRRSHNTIILGLCQQSKIDQ-ACQVFHEMEARDIPPDSWSYGILIDGLAKAG 199

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K++  +++F  M+++GI P+  TY  +I G   A  + +A   +  MRSK  +P R  FN
Sbjct: 200 KLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFN 259

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI A  + G +D AF +L  M  + H   PD +T   L+    +  +VD AR +     
Sbjct: 260 ILIDAHCKRGKMDEAFRLLKRMTDDGHV--PDVVTYSTLISGLCSIARVDDARHLL---- 313

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                                          +DM K+   P  V  + LI     AG+++
Sbjct: 314 -------------------------------EDMVKRQCKPTVVTQNTLIHGLCKAGRIK 342

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E+L    + G S  +++Y++L+     A   ++A EL   M +  L P V T  AL+
Sbjct: 343 EAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALV 402

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           + LC  ++LP+   V + MKS G  PN  TY+ L++       V+ GL L  +    G+ 
Sbjct: 403 SGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGIS 462

Query: 442 PNLVMFK------CIIGMCSRRYEKARTLNEHVLSFNSGRP--------QIENKWTSLAL 487
           P+ V++       C  G  +R  E  R   E + S   G           ++     +AL
Sbjct: 463 PDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMAL 522

Query: 488 MVYREAIVAGTIPTVEVVSKVLGCL 512
              R+ +  G +P  E  + ++  L
Sbjct: 523 GFVRDMVRGGQLPAPERCASLVAGL 547



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 198/442 (44%), Gaps = 12/442 (2%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            +VS    SY  LI    + G++++  DL + +   G+      Y +    +C +  +  
Sbjct: 4   RNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMAN-SFD 62

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A   F  +      P+  T+N+++         E A  +++ + E G   D   Y T++
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               KSG+V+    +F+EM   G  PN  ++  +I G  +  ++ +A   +  M ++++ 
Sbjct: 123 DGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIP 182

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD   +  LI    ++G ++ A+ +   M      + P  +T   ++     A  +D A 
Sbjct: 183 PDSWSYGILIDGLAKAGKLNEAYKLFRRMLDS--GITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E++K +     + +   + I I+   + G  + A  +   MT  G +PD V  S LI   
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               +V+ A  +L++   +     +++ ++L+     A   ++A E+ + M S    P V
Sbjct: 301 CSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDV 360

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N L+   C   Q  +  E+LSDM + GL PN +TY+ L+    + + +     + +Q
Sbjct: 361 VTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQ 420

Query: 435 AKEDGVIPNLVMFKC-IIGMCS 455
            K  G  PNL  +   I+G CS
Sbjct: 421 MKSSGCAPNLFTYTALILGFCS 442



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 156/317 (49%), Gaps = 10/317 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + P+  +YG LIDG AKAG++  A   +  +    V P  V + +LI     + + D A 
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE-VYKMIHKYNIKGTPEV--YTI 274
           ++ A+MN    P  P  +T   ++ A    G ++ A + + KMI   ++   P+V  Y  
Sbjct: 66  ELFADMNRRGCP--PSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHV---PDVVTYNT 120

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            ++   ++G  E A  ++++M + G  P+    + +I       K++ A ++  E + + 
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD 180

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I     SY  L+   + A    +A +L+  M    + P+  T N +I  +C    L + +
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           E+   M+S G  P+  T++IL+ A  ++  ++    LL +  +DG +P++V +  +I G+
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 454 CS-RRYEKARTLNEHVL 469
           CS  R + AR L E ++
Sbjct: 301 CSIARVDDARHLLEDMV 317



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 138/310 (44%), Gaps = 15/310 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI    ++G++ E   LL+ M   G +     Y      +C   +          +
Sbjct: 257 TFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDM 316

Query: 87  VPN---PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           V     PT+ T N L+  +C + +  E A +VL  +  +G   D   Y TL+    ++G+
Sbjct: 317 VKRQCKPTVVTQNTLIHGLCKAGRIKE-AREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQ 375

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            +   E+  +MV  G+ PNV TY AL+ G  KA ++ +A G +  M+S    P+   + A
Sbjct: 376 TERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTA 435

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI     +G VD    +  EM      + PDH+  G L      +G+  RA E+ +   +
Sbjct: 436 LILGFCSAGQVDGGLKLFGEMVCA--GISPDHVVYGTLAAELCKSGRSARALEILRE-GR 492

Query: 263 YNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
            +++      EVY  A++     G  E A     DM + G +P     ++L+     +G+
Sbjct: 493 ESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQ 552

Query: 320 VEAAFEILQE 329
              A  +L+E
Sbjct: 553 GGEARAVLEE 562



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 122/249 (48%), Gaps = 6/249 (2%)

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           V PD  + G L+   A AG+++ AR++++ +    +  +   YT  I+       ++ A 
Sbjct: 6   VSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 65

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            ++ DM ++G  P  V  + +ID +   G +E A +++++    G    +++Y+++M   
Sbjct: 66  ELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGL 125

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
             +   ++AL L+  M+ +   P   + N +I  LC   ++ +  +V  +M++  + P++
Sbjct: 126 CKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDS 185

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHV 468
            +Y IL+    +   +     L  +  + G+ P+ V +  +I GMC      A TL+E +
Sbjct: 186 WSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMC-----LAYTLDEAL 240

Query: 469 LSFNSGRPQ 477
             F S R +
Sbjct: 241 ELFKSMRSK 249


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/499 (23%), Positives = 218/499 (43%), Gaps = 36/499 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKLVP 88
            +++G+ +E  D+L++M   G+     +Y      +CK      + K +KE     K+  
Sbjct: 358 FMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKE---MIKVGL 414

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+N LM       D +GAF++L  ++ +G+  +   Y  +I    ++G+      
Sbjct: 415 RPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGN 474

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM++ G++PN   Y  LI G +K G ++ A  A   M   NV PD   +N+LI    
Sbjct: 475 LLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLS 534

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G ++ A +  A++  +   + PD  T   L+      G +++A ++ + +    +K  
Sbjct: 535 TVGRMEEAEEYYAQV--QKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPN 592

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            + YT  +    ++ D+E   S+   M   G  PD      +I     +  +E AF +L 
Sbjct: 593 ADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLT 652

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E +  G+   +  YSSL+       + +KA+ L + M    L+P +   NALI   C   
Sbjct: 653 EVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSG 712

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            + +   V   + + GL PN +TY+ L+    +  D+     L  +  + G+ P+  ++ 
Sbjct: 713 DISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYN 772

Query: 449 CIIGMCSR--RYEKARTLNEHVLSFNSG----------------RPQIENKWTSLALMVY 490
            +   CS     E+A  L E +  FN G                R +++     L +M+ 
Sbjct: 773 VLATGCSDAADLEQALFLTEEM--FNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMD 830

Query: 491 REAIVAGTIPTVEVVSKVL 509
           RE      +P  + V KV+
Sbjct: 831 RE-----IVPNAQTVEKVV 844



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 188/430 (43%), Gaps = 41/430 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    R G + E     E+M   GL                              
Sbjct: 280 TYNVMISGLCRSGAVEEAFGFKEEMVDYGL------------------------------ 309

Query: 87  VPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
             +P   T+  LM+ +C  S+  E A  +L  +  +GLK +  +Y TL+    K GK   
Sbjct: 310 --SPDAFTYGALMNGLCKGSRLKE-AKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAE 366

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            F++  EM++AG++PN   Y  LI G  K GQ+ +A      M    ++PD   +N L+ 
Sbjct: 367 AFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQ 426

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              Q    D AF++L EM      + P+  + G ++      G+   A  + + +    +
Sbjct: 427 GHFQQHDKDGAFELLNEMRNS--GILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGL 484

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K    +Y   I   S+ G+   AC   + MTK  V PD    ++LI      G++E A E
Sbjct: 485 KPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEE 544

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
              + + +G+     +YS L+       N +KA +L   M +  LKP   T   L+    
Sbjct: 545 YYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYF 604

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             +   K   +L  M   G  P+   Y I++    R +++EV  M+L++ +++G++P+L 
Sbjct: 605 KSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLH 664

Query: 446 MFKCII-GMC 454
           ++  +I G+C
Sbjct: 665 IYSSLISGLC 674



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 184/385 (47%), Gaps = 12/385 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQKAIKEAFRFFKL 86
           N L + G   E  +LLE+M  +GL     +Y      H++  N+  + +A++   +  K 
Sbjct: 461 NGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALE---KMTKA 517

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             +P L  +N L+   ++    E A +    VQ+ GL  D   Y+ LI    K+G ++  
Sbjct: 518 NVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKA 577

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  +M+N+G++PN  TY  L++G  K+    K       M     KPD  ++  +I  
Sbjct: 578 DQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRN 637

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +S  ++ AF VL E+  E + + PD     +L+        +++A  +   + K  ++
Sbjct: 638 LSRSENMEVAFMVLTEV--EKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLE 695

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y   I+   ++GD   A +V+D +  KG++P+ V  +ALID     G +  AF++
Sbjct: 696 PGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDL 755

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            +E  ++GI+     Y+ L   CS+A + ++AL L E M + +    VS  N L+   C 
Sbjct: 756 YKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFN-RGYANVSLFNTLVHGFCK 814

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTIT 411
             +L +T ++L  M    + PN  T
Sbjct: 815 RGKLQETEKLLHVMMDREIVPNAQT 839



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 164/364 (45%), Gaps = 2/364 (0%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P+P+ +  ++L+     +     A QV+ ++ + GL    +    L+    ++  ++ ++
Sbjct: 169 PSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLW 228

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++   M  AGI P+V+TY   I+   KA     A   +  MR ++   + V +N +I+  
Sbjct: 229 KLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGL 288

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +SGAV+ AF    EM    + + PD  T GALM       ++  A+ +   +    +K 
Sbjct: 289 CRSGAVEEAFGFKEEMVD--YGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKP 346

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
              VY   ++   + G    A  +  +M   GV P+++    LI      G++  A ++L
Sbjct: 347 NIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLL 406

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E    G+     +Y+ LM       +   A EL   M++  + P V +   +I  LC  
Sbjct: 407 KEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQN 466

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +  +   +L +M S GL PN   Y+ L++   ++ ++ +    L +  +  V P+L  +
Sbjct: 467 GESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCY 526

Query: 448 KCII 451
             +I
Sbjct: 527 NSLI 530



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 125/541 (23%), Positives = 221/541 (40%), Gaps = 103/541 (19%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL----YTTLITTCAKSGKVDA 145
           P + T++  +     ++D + A +V   ++    + DC +    Y  +I+   +SG V+ 
Sbjct: 241 PDVYTYSTFIEAHCKARDFDAAKKVFEEMR----RRDCAMNEVTYNVMISGLCRSGAVEE 296

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            F    EMV+ G+ P+  TYGAL++G  K  ++ +A      M    +KP+ VV+  L+ 
Sbjct: 297 AFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVD 356

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G    AFD+L EM +    V P+ I    L++     GQ+ RA ++ K       
Sbjct: 357 GFMKEGKTAEAFDILKEMISA--GVQPNKIMYDNLIRGLCKIGQLGRASKLLK------- 407

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                                       +M K G+ PD    + L+         + AFE
Sbjct: 408 ----------------------------EMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFE 439

Query: 326 ILQEAKNQGISVGIISYSSLM-GACSNAK------------------------------- 353
           +L E +N GI   + SY  ++ G C N +                               
Sbjct: 440 LLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHS 499

Query: 354 ---NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
              N   A E  E M    + P +   N+LI  L    ++ +  E  + ++  GL P+  
Sbjct: 500 KEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEF 559

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHV 468
           TYS L+    +  ++E    LL Q    G+ PN   +  ++     S  YEK  ++ + +
Sbjct: 560 TYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSM 619

Query: 469 LSFNSGRPQ-------IENKWTS----LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517
           L  +  +P        I N   S    +A MV  E    G +P + + S ++  L    +
Sbjct: 620 LG-SGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIAD 678

Query: 518 ADIRERLVENLGVSADALKRSNLC--SLIDGF---GEYDPRAFSLLEEAASFGIVP-CVS 571
            +    L++ +  + + L+   +C  +LIDGF   G+   RA ++ +   + G+VP CV+
Sbjct: 679 MEKAVGLLDEM--AKEGLEPGIVCYNALIDGFCRSGDIS-RARNVFDSILAKGLVPNCVT 735

Query: 572 F 572
           +
Sbjct: 736 Y 736



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 152/365 (41%), Gaps = 45/365 (12%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +V   L  YN LI+     GR+ E  +    ++++GL+  +  Y       CK+   +++
Sbjct: 518 NVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGN-LEK 576

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A +  + + N    P   T+  L+     S D E    +L+ +  +G K D  +Y  +I 
Sbjct: 577 ADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIR 636

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
             ++S  ++  F V  E+   G+ P++H Y +LI G  K   + KA G    M  + ++P
Sbjct: 637 NLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEP 696

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
             V +NALI    +SG + RA +V   + A+   + P+ +T  AL+      G +  A +
Sbjct: 697 GIVCYNALIDGFCRSGDISRARNVFDSILAK--GLVPNCVTYTALIDGNCKNGDITDAFD 754

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---------------- 299
           +YK +    I     VY +    CS   D E A  + ++M  +G                
Sbjct: 755 LYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCK 814

Query: 300 ------------------VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
                             ++P+   +  ++   G AGK+  A  +  E + +  S     
Sbjct: 815 RGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQKKASQSATD 874

Query: 342 YSSLM 346
             SL+
Sbjct: 875 RFSLL 879



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 141/313 (45%), Gaps = 4/313 (1%)

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P+      L+D   K G V  A     +M    + P R   N L+    ++ A++  + +
Sbjct: 171 PSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKL 230

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
              M  E   + PD  T    ++A   A   D A++V++ + + +       Y + I+  
Sbjct: 231 KGFM--EGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGL 288

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            ++G  E A    ++M   G+ PD     AL++      +++ A  +L E    G+   I
Sbjct: 289 CRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNI 348

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           + Y +L+          +A ++ + M S  ++P     + LI  LC   QL +  ++L +
Sbjct: 349 VVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKE 408

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY 458
           M  +GL P+T TY+ L+    ++ D +    LL++ +  G++PN+  +  +I G+C    
Sbjct: 409 MIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGE 468

Query: 459 EK-ARTLNEHVLS 470
            K A  L E ++S
Sbjct: 469 SKEAGNLLEEMIS 481


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 165/376 (43%), Gaps = 47/376 (12%)

Query: 85  KLVPNPTLS--TFNML---MSVCASSKDSEGAFQVLRLVQE-AGLKADCKLY--TTLITT 136
           KL PN  L    F  L   +S     + +   F  LR   E + L+A C +Y  T  I+ 
Sbjct: 94  KLQPNEPLPEVIFRALHHDLSRLGKDRRAMELFDWLRSANERSPLRALCDVYSYTATISL 153

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
           C     VD   E+  EM +  IE NVHTY AL++ C K G++  A   Y  MR+ N  P+
Sbjct: 154 CIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPN 213

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRARE 255
            V +N L+   G+ G  +RA  VL  M  E V PV                         
Sbjct: 214 VVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPV------------------------- 248

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
               +  YN         IA N C+Q  +   A +VY  +   G  P+    +ALI   G
Sbjct: 249 ----LRTYN------TLIIACNMCNQPRE---ALAVYQRLLSDGFTPNSTTYNALISAYG 295

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
              ++  A E+ QE   Q +   +I+YSSL+ AC  A  W+ AL ++  M+  K  P   
Sbjct: 296 KTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQDKCVPNTV 355

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N+L+TA   G Q  K  EV   M + G  P+ +TY+ L+ A ER    +  L    + 
Sbjct: 356 TYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQKALQAFHKM 415

Query: 436 KEDGVIPNLVMFKCII 451
              G  P+ +++  II
Sbjct: 416 CVQGCKPDAIVYNAII 431



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 198 VVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDR 252
           V+F AL     + G   RA   FD L   N E  P+    D  +  A +  C +   VDR
Sbjct: 104 VIFRALHHDLSRLGKDRRAMELFDWLRSAN-ERSPLRALCDVYSYTATISLCIHGQDVDR 162

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A E+ + +   NI+     YT  +N C + G    A  +Y+ M     +P+ V  + L+D
Sbjct: 163 ALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVD 222

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
             G  G+ E A  +L   K++G+   + +Y++L+ AC+     ++AL +Y+ + S    P
Sbjct: 223 VYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTP 282

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
             +T NALI+A     QL K +EV  +M    +  + ITYS L+ ACE+    E  L + 
Sbjct: 283 NSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIF 342

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468
           ++ ++D  +PN V +  ++  C++  ++EKA  + E +
Sbjct: 343 NEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQM 380



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/305 (27%), Positives = 144/305 (47%), Gaps = 18/305 (5%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKA-----IKEAFRFFKLVPNPTLST 94
           +   ++L+++M  + +      Y A   NVC K  K      I  + R    +PN  + T
Sbjct: 160 VDRALELMQEMRSRNIERNVHTYTA-LMNVCIKCGKLPLALDIYNSMRAVNCMPN--VVT 216

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N L+ V       E A  VL +++  G++   + Y TLI  C    +      V+  ++
Sbjct: 217 YNTLVDVYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLL 276

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           + G  PN  TY ALI    K  Q+ KA   Y  M  +N+    + +++LI+AC ++G  +
Sbjct: 277 SDGFTPNSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWE 336

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--Y 272
            A  +  EM  +     P+ +T  +L+ ACA  GQ ++A EV++ ++ +    TP+V  Y
Sbjct: 337 TALRIFNEMQQD--KCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGC--TPDVVTY 392

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA---AFEILQE 329
           T  I+   + G W+ A   +  M  +G  PD +  +A+ID     G + A   A ++   
Sbjct: 393 TALISAYERGGQWQKALQAFHKMCVQGCKPDAIVYNAIIDTLWETGIIWAQGKALQLFMT 452

Query: 330 AKNQG 334
           A  QG
Sbjct: 453 AVQQG 457



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 125/273 (45%), Gaps = 17/273 (6%)

Query: 22  AHDVSEQLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           + ++   +H+Y  L    I+ G++   +D+   M     +  + V +    +V       
Sbjct: 172 SRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMP-NVVTYNTLVDVYGKLGQW 230

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + A     ++ +    P L T+N L+  C        A  V + +   G   +   Y  L
Sbjct: 231 ERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTYNAL 290

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I+   K+ ++    EV+ EM+   ++ +V TY +LI  C KAGQ   A   +  M+    
Sbjct: 291 ISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQDKC 350

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+ V +N+L+TAC Q G  ++A +V  +MNA  H   PD +T  AL+ A    GQ  +A
Sbjct: 351 VPNTVTYNSLVTACAQGGQWEKAAEVFEQMNA--HGCTPDVVTYTALISAYERGGQWQKA 408

Query: 254 REVYKMIHKYNIKG-TPE--VYTIAINCCSQTG 283
            + +   HK  ++G  P+  VY   I+   +TG
Sbjct: 409 LQAF---HKMCVQGCKPDAIVYNAIIDTLWETG 438



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 136/305 (44%), Gaps = 10/305 (3%)

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVK-PDRVV-----FNALITACGQSGAVDRAFD 218
           + AL    ++ G+  +A   +  +RS N + P R +     + A I+ C     VDRA +
Sbjct: 106 FRALHHDLSRLGKDRRAMELFDWLRSANERSPLRALCDVYSYTATISLCIHGQDVDRALE 165

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           ++ EM +    ++ +  T  ALM  C   G++  A ++Y  +   N       Y   ++ 
Sbjct: 166 LMQEMRSR--NIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVDV 223

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             + G WE A  V D M  +GV P     + LI       +   A  + Q   + G +  
Sbjct: 224 YGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTPN 283

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
             +Y++L+ A        KALE+Y+ M    +  +V T ++LI+A     Q    + + +
Sbjct: 284 STTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIFN 343

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-- 456
           +M+     PNT+TY+ L+ AC +    E    +  Q    G  P++V +  +I    R  
Sbjct: 344 EMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGG 403

Query: 457 RYEKA 461
           +++KA
Sbjct: 404 QWQKA 408


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 192/415 (46%), Gaps = 10/415 (2%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           FFN  +  KA      F ++  +P + T+N ++     +++ + A  V + + E G+K +
Sbjct: 203 FFNEGQVDKAYS---LFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPN 259

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y T+I    K+ +VD    VF +MV+ G++P+  TY  +IDG  KA  V +A G + 
Sbjct: 260 NVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQ 319

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M  + VKPD V +N +I    ++ A+D+A  V  +M  +   V PD++T   ++     
Sbjct: 320 QMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDK--GVKPDNLTYTIIIDGLCK 377

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           A  VDRA  V++ +    +K     Y   I+    TG WE       +M+   + PD   
Sbjct: 378 AQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFT 437

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
              L+D+    GK   A  +      +GI   +  Y  ++          +  +L   M 
Sbjct: 438 YGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMV 497

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +  + P     N +I A      + + M +   MK  GL PN +TY  L+ A  +   V+
Sbjct: 498 ANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVD 557

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSG-RPQI 478
             ++  +Q   +GV PN V+F  ++ G+C+  ++EK   L   +L  N G RP I
Sbjct: 558 DAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEML--NQGIRPDI 610



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/514 (23%), Positives = 232/514 (45%), Gaps = 35/514 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  + +YN +I    +   +    D+ + M  KG+   +  Y+     +CK+Q+     
Sbjct: 221 VSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAE 280

Query: 81  FRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F K+V     P+  T+N ++     ++  + A  V + + + G+K D   Y T+I   
Sbjct: 281 GVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGL 340

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K+  +D    VF +M++ G++P+  TY  +IDG  KA  V +A G +  M  K VKP+ 
Sbjct: 341 CKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNN 400

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             +N LI     +G  +     + EM+A  H ++PD  T G L+      G+ + AR ++
Sbjct: 401 GTYNCLIHGYLSTGQWEEVVQRIKEMSA--HDLEPDVFTYGLLLDYLCKNGKCNEARSLF 458

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             + +  IK +  +Y I ++   + G       + + M   G+ P+    + +I      
Sbjct: 459 DSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKR 518

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
             ++    I  + K QG+S  +++Y +L+ A         A+  +  M +  + P     
Sbjct: 519 AMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVF 578

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N+L+  LC  D+  K  E+  +M + G+ P+ + ++ +L    ++  V     L+     
Sbjct: 579 NSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVC 638

Query: 438 DGVIPNLVMFKCII-GMC--SRRYEKARTLN--------EHVLSFNS--------GRPQI 478
            G+ P+++ +  +I G C  SR  E  + L+         +++S+N+        GR  I
Sbjct: 639 MGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGR--I 696

Query: 479 ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
           +N +      ++RE +  G  P VE  + +L  L
Sbjct: 697 DNAYC-----LFREMLRKGVTPGVETYNTILNGL 725



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 177/419 (42%), Gaps = 49/419 (11%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-- 134
           +K  +R   +V N       +L  +C + +  E    +LR + E G +     Y TL+  
Sbjct: 111 LKTGWRVDDIVVN------QLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKG 164

Query: 135 ----------------------TTCA--------------KSGKVDAMFEVFHEMVNAGI 158
                                 ++C+                G+VD  + +F EM   G+
Sbjct: 165 LCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GV 221

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
            P+V TY  +IDG  KA +V +A   +  M  K VKP+ V +N +I    ++  VD A  
Sbjct: 222 SPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEG 281

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           V  +M  +   V P ++T   ++     A  VDRA  V++ +    +K     Y   I+ 
Sbjct: 282 VFQKMVDK--GVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDG 339

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             +    + A  V+  M  KGV PD +  + +ID    A  V+ A  + Q+  ++G+   
Sbjct: 340 LCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPN 399

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
             +Y+ L+    +   W++ ++  + M +  L+P V T   L+  LC   +  +   +  
Sbjct: 400 NGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFD 459

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
            M   G+ P+   Y I+L    +K  +     LL+    +G+ PN  +F  +I   ++R
Sbjct: 460 SMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKR 518



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/433 (20%), Positives = 190/433 (43%), Gaps = 38/433 (8%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AHD+   + +Y  L+    + G+ +E   L + M RKG+                     
Sbjct: 428 AHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGI--------------------- 466

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P+++ + +++              +L L+   G+  + +++ T+I   
Sbjct: 467 -----------KPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAY 515

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
           AK   +D +  +F +M   G+ PNV TYG LID   K G+V  A   +  M ++ V P+ 
Sbjct: 516 AKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNN 575

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           VVFN+L+         ++  ++  EM  +   + PD +    ++      G+V  AR + 
Sbjct: 576 VVFNSLVYGLCTVDKWEKVEELFLEMLNQ--GIRPDIVFFNTVLCNLCKEGRVMEARRLI 633

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             +    +K     Y   I+        + A  + D M   G+ P+ V  + L+     A
Sbjct: 634 DSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKA 693

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+++ A+ + +E   +G++ G+ +Y++++     +  + +A ELY +M   +   ++ T 
Sbjct: 694 GRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTY 753

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           + ++   C  +   +  ++   + S+ L  + IT++I++    +    E  + L +    
Sbjct: 754 SIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPA 813

Query: 438 DGVIPNLVMFKCI 450
           +G++P++V ++ I
Sbjct: 814 NGLVPSVVTYRLI 826



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 134/331 (40%), Gaps = 40/331 (12%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + P+  TY  +I    + G++   F A+G++     + D +V N L+     +  V  A 
Sbjct: 80  VAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAM 139

Query: 218 DVLAEMNAEV-------------------------------------HPVDPDHITIGAL 240
            VL     EV                                         PD ++   +
Sbjct: 140 HVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIV 199

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           +    N GQVD+A   Y +  +  +      Y   I+   +  + + A  V+  M +KGV
Sbjct: 200 INGFFNEGQVDKA---YSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGV 256

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            P+ V  + +ID    A +V+ A  + Q+  ++G+    ++Y++++     A+   +A  
Sbjct: 257 KPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEG 316

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           +++ M    +KP   T N +I  LC    + K   V   M   G+ P+ +TY+I++    
Sbjct: 317 VFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLC 376

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   V+    +  Q  + GV PN   + C+I
Sbjct: 377 KAQSVDRAEGVFQQMIDKGVKPNNGTYNCLI 407


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 173/367 (47%), Gaps = 7/367 (1%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K VP+ T  TFN+L+   A +   E A  V   + +  +  D   YT LI +    G++D
Sbjct: 95  KFVPDHT--TFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRID 152

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           A+ ++F  M   G +PN+ TY +++     AG+V +A   +  M  K ++PD V +N LI
Sbjct: 153 AVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILI 212

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            A G++G ++RAFD + +  +  + V     T  +L+ +    G +    E++  +    
Sbjct: 213 DAFGKTGQLERAFDFVGKSRSFTNEV-----TYNSLLSSLGRKGDIQGLMELFGQMKAKG 267

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +      Y I I      G  E    +Y +M    +  D V ++ ++D    AG+VEAAF
Sbjct: 268 LVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAF 327

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+ Q+ K +G++   ++Y+ L+     A     A  L   M+     P + T N LI++ 
Sbjct: 328 ELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSY 387

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
                L     +  +MK  G+ PN ++YS L+    +    +  + L  + K +G  PN 
Sbjct: 388 GKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNH 447

Query: 445 VMFKCII 451
           V +  +I
Sbjct: 448 VTYNLLI 454



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 179/378 (47%), Gaps = 5/378 (1%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +KA++    F K    PT  T++ ++ V     D +    + + + +A    D   +  L
Sbjct: 47  EKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNIL 106

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I + AK+ +V+    VF +M    + P+V+TY  LI      G++      +  M ++  
Sbjct: 107 IDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGC 166

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           +P+   +++++ A G +G VD A D+  +M  +   + PD +T   L+ A    GQ++RA
Sbjct: 167 QPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQK--GLQPDAVTYNILIDAFGKTGQLERA 224

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
              +  + K         Y   ++   + GD +    ++  M  KG++ +E+  + LI+ 
Sbjct: 225 ---FDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIER 281

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
            G AG+VE  +++  E  +  I   I++ ++++   S A   + A EL++ MK   L   
Sbjct: 282 LGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNAD 341

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
             T N LI  L    +L     +L +M+  G  PN ITY+ L+ +  +  ++     L  
Sbjct: 342 TVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFL 401

Query: 434 QAKEDGVIPNLVMFKCII 451
           + KE GV PN+V +  +I
Sbjct: 402 EMKERGVAPNVVSYSSLI 419



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 196/437 (44%), Gaps = 31/437 (7%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           FN L+ +   +   E A Q L    + G +     Y+++I    K G V     ++ +M+
Sbjct: 33  FNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQML 92

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            A   P+  T+  LID  AKA QV +A   +G M   NV PD   +  LI + G  G +D
Sbjct: 93  KAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRID 152

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
               +   M A+     P+  T  ++M A  +AG+VD A ++++ + +  ++     Y I
Sbjct: 153 AVMKLFESMTAQ--GCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNI 210

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   +TG  E A   +D + K     +EV  ++L+   G  G ++   E+  + K +G
Sbjct: 211 LIDAFGKTGQLERA---FDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKG 267

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +    ++Y+ L+     A   +   +LY  M    +K  + T+N ++  L    ++    
Sbjct: 268 LVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAF 327

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           E+  DMK  GL  +T+TY+IL+    R   ++    LL + +E+G  PN++ +  +I   
Sbjct: 328 ELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSY 387

Query: 455 SRRYE-----------KARTLNEHVLSFNS--------GRPQIENKWTSLALMVYREAIV 495
            +              K R +  +V+S++S        GR       T  A+ ++RE   
Sbjct: 388 GKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGR-------TDAAISLFREMKA 440

Query: 496 AGTIPTVEVVSKVLGCL 512
            G  P     + ++ CL
Sbjct: 441 EGCPPNHVTYNLLIDCL 457



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 151/309 (48%), Gaps = 4/309 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS-TFNM 97
           GR+ E  D+ + M +KG L  D V +    +       ++ AF F     + T   T+N 
Sbjct: 184 GRVDEACDIFQQMVQKG-LQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSFTNEVTYNS 242

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L+S      D +G  ++   ++  GL ++   Y  LI     +G+V+ +++++ EMV+  
Sbjct: 243 LLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDND 302

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I+ ++ T   ++D  +KAG+V  AF  +  M+ K +  D V +N LI   G++G +D A 
Sbjct: 303 IKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAG 362

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            +L EM  E +   P+ IT   L+ +      +  A  ++  + +  +      Y+  I 
Sbjct: 363 ALLLEM--EENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLIE 420

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
              + G  + A S++ +M  +G  P+ V  + LID    AG+  AA E L+E ++ G  +
Sbjct: 421 GFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQM 480

Query: 338 GIISYSSLM 346
           G ++ S L+
Sbjct: 481 GKVTKSLLV 489



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 164/386 (42%), Gaps = 32/386 (8%)

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M+    K D  +FN LI   G++  +++A   LA    E     P   T  ++++     
Sbjct: 21  MQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGR--PTAYTYSSMIQVFMKG 78

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G V     +YK + K         + I I+  ++    E AC+V+ DM K  V PD    
Sbjct: 79  GDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTY 138

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + LI   G  G+++A  ++ +    QG    + +Y S+M A  +A    +A ++++ M  
Sbjct: 139 TILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQ 198

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             L+P   T N LI A     QL +  + +   +S     N +TY+ LL +  RK D++ 
Sbjct: 199 KGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSF---TNEVTYNSLLSSLGRKGDIQG 255

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 487
            + L  Q K  G++ N + +  +I                     +GR  +E+ W     
Sbjct: 256 LMELFGQMKAKGLVSNELTYAILIERLGW----------------AGR--VEDVWQ---- 293

Query: 488 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLI 544
            +Y E +       +  ++ VL CL      +    L +++   G++AD +  + L + +
Sbjct: 294 -LYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGL 352

Query: 545 DGFGEYDPRAFSLLEEAASFGIVPCV 570
              G+ D  A +LL E    G  P +
Sbjct: 353 GRAGKLDA-AGALLLEMEENGCAPNI 377



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 14/250 (5%)

Query: 16  GKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           GK  ++ ++V+     YN L+    R+G I   ++L   M+ KGL+  +  Y      + 
Sbjct: 229 GKSRSFTNEVT-----YNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLG 283

Query: 72  KSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
            + +       + ++V N     + T N ++   + +   E AF++ + ++  GL AD  
Sbjct: 284 WAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTV 343

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            Y  LI    ++GK+DA   +  EM   G  PN+ TY  LI    K   ++ A   +  M
Sbjct: 344 TYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEM 403

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           + + V P+ V +++LI   G++G  D A  +  EM AE  P  P+H+T   L+     AG
Sbjct: 404 KERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCP--PNHVTYNLLIDCLIRAG 461

Query: 249 QVDRAREVYK 258
           +   A E  +
Sbjct: 462 RFGAAMEYLR 471



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 82/189 (43%), Gaps = 32/189 (16%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L + GR+    +L +DM+ KGL                                N    T
Sbjct: 317 LSKAGRVEAAFELFQDMKFKGL--------------------------------NADTVT 344

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N+L++    +   + A  +L  ++E G   +   Y TLI++  K   + A   +F EM 
Sbjct: 345 YNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMK 404

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+ PNV +Y +LI+G  KAG+   A   +  M+++   P+ V +N LI    ++G   
Sbjct: 405 ERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFG 464

Query: 215 RAFDVLAEM 223
            A + L EM
Sbjct: 465 AAMEYLREM 473



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 7/171 (4%)

Query: 288 ACSVYDD-------MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           A   YDD       M K     D    + LI   G A  +E A + L     +G      
Sbjct: 7   AARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAY 66

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +YSS++       + Q  L +Y+ M   K  P  +T N LI +L   DQ+ +   V  DM
Sbjct: 67  TYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDM 126

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             L + P+  TY+IL+ +      ++  + L       G  PNL  +  ++
Sbjct: 127 FKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVM 177


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/483 (23%), Positives = 219/483 (45%), Gaps = 38/483 (7%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           +QF    G+   Y HDV    H  + L++ G       + +D+   G       +     
Sbjct: 11  IQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIR 70

Query: 69  NVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
             CK+ +A++ A  F + +      P +  FN+L+       + + A ++   ++ + +K
Sbjct: 71  GNCKAGQAMR-ALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVK 129

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAF 182
            +   Y T+I+   KSG ++   E+  EM+  G +  P++ TY  LI+   +A ++ +A 
Sbjct: 130 PEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREAC 189

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM------------NAEVHPV 230
                M++  + PD +  N L++   + G V+ A ++L  M            N+ +H +
Sbjct: 190 AFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHAL 249

Query: 231 ------------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
                              PD +T   L+     AG + RA EV + + + NI      Y
Sbjct: 250 CVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITY 309

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           TI +N   + G  + A  + +++ ++G IPD +  ++L+D    +G++E A ++++E   
Sbjct: 310 TILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSV 369

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G   G++ YSSL+     A N  KA E+   M SI + P + T N ++  L     + K
Sbjct: 370 RGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISK 429

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
            + ++SD+ + G  P+ +TY+ L+    + + V     L  +    G  PN V    ++ 
Sbjct: 430 AVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVF 489

Query: 452 GMC 454
           G+C
Sbjct: 490 GLC 492



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 169/350 (48%), Gaps = 9/350 (2%)

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           ++ G K D   Y  L+    KSG      +V+ +++++G  PN+ T+  LI G  KAGQ 
Sbjct: 19  EQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQA 78

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            +A      +   +V PD  +FN LI    + G  D+A  +   M  E   V P+ +T  
Sbjct: 79  MRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENM--ESSRVKPEIVTYN 136

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMT 296
            ++     +G +++ARE+ + + +   K  P++  Y   IN   +      AC+  + M 
Sbjct: 137 TVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMK 196

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
             G+ PD +  + L+      G VE A EIL   K  G    +I+Y+S++ A   A    
Sbjct: 197 AAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAG--- 253

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           K +E  E +K++   P + T N L+   C    LP+ +EVL +M    + P+ ITY+IL+
Sbjct: 254 KVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILV 313

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
               R   V+V   LL +    G IP+++ +  ++ G+C S   E+A  L
Sbjct: 314 NGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKL 363



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 117/500 (23%), Positives = 203/500 (40%), Gaps = 55/500 (11%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDM-DKVYHARFFNVCKSQKAIKE 79
           V  ++ +YN +I    + G + +  +LLE+M RKG     D V +    N       I+E
Sbjct: 128 VKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIRE 187

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI- 134
           A  F + +     NP + T N+L+S      D E A ++L  ++ AG   D   Y ++I 
Sbjct: 188 ACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIH 247

Query: 135 -----------------TTCA--------------KSGKVDAMFEVFHEMVNAGIEPNVH 163
                             +C+              K+G +    EV  EM    I P+V 
Sbjct: 248 ALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVI 307

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           TY  L++G  + GQV  AF     +  +   PD + + +L+    +SG ++ A  ++ EM
Sbjct: 308 TYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEM 367

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
           +  V       +   +L+     AG V +ARE+   +   N+      Y I +    + G
Sbjct: 368 S--VRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDG 425

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
               A S+  D+  +G +PD V  + LID    A +V  A ++  E  ++G     ++  
Sbjct: 426 SISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLG 485

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           S++           A  L   M   +  P V    +LI  LC  D++     VL  M+  
Sbjct: 486 SVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQ 545

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 463
           G+  +   Y  L+V+      V   + +  +    G +P+        G  S+  E+A  
Sbjct: 546 GVALDDFAYRKLIVSMSHGGRVAEAMAMYDEMVARGFLPD--------GSTSKTLEEA-A 596

Query: 464 LNEHVLSFNSGRPQIENKWT 483
           ++  V  + +     EN W+
Sbjct: 597 MSNSVFEWTNLE---ENAWS 613


>gi|299469655|emb|CBN76509.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 787

 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 126/476 (26%), Positives = 198/476 (41%), Gaps = 50/476 (10%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVC----KSQKAIKEAFRFFKLVPNPTLST 94
           G  +E + LL +M+  G+ + + + +      C    +S+ A+        L   P   T
Sbjct: 298 GMGAEAVGLLREMQAAGI-EPNVICYNTAIAACGTGGQSEVAVDLLEEMNALGVRPNTQT 356

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
               +         E A  VLR + EAG+ A+ K Y   I  C +  +     E+  EM 
Sbjct: 357 CLAAVRAAGDRDRGEQAVSVLRSMSEAGVAAEAKCYAVTIKACGRGRRWARALELLREME 416

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+EP V  Y A I  C    Q  +A      M +  V P  V ++  I ACGQS    
Sbjct: 417 KNGVEPIVMGYDACIAACGDGKQWEQAVALLREMPTVGVTPTVVSYSHAIAACGQSYQWK 476

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALM--------------------------------- 241
            A ++L EM  E   ++PD +     M                                 
Sbjct: 477 PALELLREMPQEAG-INPDAVCYNNCMTALGRGLQWEMALTLLREMPSVGLPIKAQSYTV 535

Query: 242 --KACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTK 297
             KAC +AG+   A  + + +    +   P V  YT AI  C +   W+ A  +  +M  
Sbjct: 536 AIKACGDAGEGKPAVALLREMQA-ELSVPPNVISYTAAIAACGKGDQWKQALELLREMAS 594

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            GV P++   +A I   G++GK E A  +L+E    G    I SY++ + AC N   W++
Sbjct: 595 MGVSPNDRTYTAAITACGNSGKWEEALSLLREMPTMGADPNIASYTATIKACGNGGQWER 654

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILL 416
           A+EL+  + S  +   V   NA + A  +   + + +E+L +M  + GL PN  TY+  L
Sbjct: 655 AVELFRELPSAGITADVQAYNACVQACGNSGAVDQAVELLREMAPAAGLEPNVFTYNAAL 714

Query: 417 VACERKDDVEVG--LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
           +AC   D    G  L LL +    G+ PN V  +  +  C    E+ R   + VL+
Sbjct: 715 MACSCPDGGRWGKALELLEEMAWRGIAPNAVTHESALAACG---ERGRDEADRVLA 767



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 141/533 (26%), Positives = 228/533 (42%), Gaps = 68/533 (12%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N +++  A+    +   +V+R ++EAGL  D   YT  I  C K  +      +  EM  
Sbjct: 218 NAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGKGREWRRSVALLKEMSA 277

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G+E N   Y   +  C  +G  A+A G    M++  ++P+ + +N  I ACG  G  + 
Sbjct: 278 HGVELNSIHYVCAMTACKISGMGAEAVGLLREMQAAGIEPNVICYNTAIAACGTGGQSEV 337

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A D+L EMNA    V P+  T  A ++A  +  + ++A  V + + +  +    + Y + 
Sbjct: 338 AVDLLEEMNA--LGVRPNTQTCLAAVRAAGDRDRGEQAVSVLRSMSEAGVAAEAKCYAVT 395

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I  C +   W  A  +  +M K GV P  +   A I   G   + E A  +L+E    G+
Sbjct: 396 IKACGRGRRWARALELLREMEKNGVEPIVMGYDACIAACGDGKQWEQAVALLREMPTVGV 455

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +  ++SYS  + AC  +  W+ ALEL   M +   + P     N  +TAL  G Q    +
Sbjct: 456 TPTVVSYSHAIAACGQSYQWKPALELLREMPQEAGINPDAVCYNNCMTALGRGLQWEMAL 515

Query: 395 EVLSDMKSLGL-------------C-----------------------PNTITYSILLVA 418
            +L +M S+GL             C                       PN I+Y+  + A
Sbjct: 516 TLLREMPSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQAELSVPPNVISYTAAIAA 575

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTL---------NEH 467
           C + D  +  L LL +    GV PN   +   I  C  S ++E+A +L         + +
Sbjct: 576 CGKGDQWKQALELLREMASMGVSPNDRTYTAAITACGNSGKWEEALSLLREMPTMGADPN 635

Query: 468 VLSFNSGRPQIEN--KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 525
           + S+ +      N  +W   A+ ++RE   AG    V+  +    C+Q   N+   ++ V
Sbjct: 636 IASYTATIKACGNGGQWER-AVELFRELPSAGITADVQAYN---ACVQACGNSGAVDQAV 691

Query: 526 ENLGVSADALK-RSNL---------CSLIDGFGEYDPRAFSLLEEAASFGIVP 568
           E L   A A     N+         CS  DG G +  +A  LLEE A  GI P
Sbjct: 692 ELLREMAPAAGLEPNVFTYNAALMACSCPDG-GRWG-KALELLEEMAWRGIAP 742



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 197/458 (43%), Gaps = 45/458 (9%)

Query: 115 LRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           +R +Q+AG++ DC     ++    +  G VD +      M NA           +++  A
Sbjct: 183 MRRLQQAGMRRDCDEAERVLRQALECPGVVDTV------MCNA-----------VLNTFA 225

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
             G+          MR   + PD + +   I ACG+     R+  +L EM+A  H V+ +
Sbjct: 226 ADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGKGREWRRSVALLKEMSA--HGVELN 283

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            I     M AC  +G    A  + + +    I+     Y  AI  C   G  E A  + +
Sbjct: 284 SIHYVCAMTACKISGMGAEAVGLLREMQAAGIEPNVICYNTAIAACGTGGQSEVAVDLLE 343

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +M   GV P+     A +  AG   + E A  +L+     G++     Y+  + AC   +
Sbjct: 344 EMNALGVRPNTQTCLAAVRAAGDRDRGEQAVSVLRSMSEAGVAAEAKCYAVTIKACGRGR 403

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
            W +ALEL   M+   ++P V   +A I A  DG Q  + + +L +M ++G+ P  ++YS
Sbjct: 404 RWARALELLREMEKNGVEPIVMGYDACIAACGDGKQWEQAVALLREMPTVGVTPTVVSYS 463

Query: 414 ILLVACERKDDVEVGLMLLSQ-AKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLS 470
             + AC +    +  L LL +  +E G+ P+ V +   +    R  ++E A TL   + S
Sbjct: 464 HAIAACGQSYQWKPALELLREMPQEAGINPDAVCYNNCMTALGRGLQWEMALTLLREMPS 523

Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 530
              G P I+ +  ++A+    +A      P V ++ ++   L +P N      +     +
Sbjct: 524 V--GLP-IKAQSYTVAIKACGDA--GEGKPAVALLREMQAELSVPPNV-----ISYTAAI 573

Query: 531 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
           +A        C    G G+   +A  LL E AS G+ P
Sbjct: 574 AA--------C----GKGDQWKQALELLREMASMGVSP 599



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS 100
           + LL +M+ +  +  + + +      C      K+A    + + +    P   T+   ++
Sbjct: 550 VALLREMQAELSVPPNVISYTAAIAACGKGDQWKQALELLREMASMGVSPNDRTYTAAIT 609

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
            C +S   E A  +LR +   G   +   YT  I  C   G+ +   E+F E+ +AGI  
Sbjct: 610 ACGNSGKWEEALSLLREMPTMGADPNIASYTATIKACGNGGQWERAVELFRELPSAGITA 669

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMR-SKNVKPDRVVFNALITACG--QSGAVDRAF 217
           +V  Y A +  C  +G V +A      M  +  ++P+   +NA + AC     G   +A 
Sbjct: 670 DVQAYNACVQACGNSGAVDQAVELLREMAPAAGLEPNVFTYNAALMACSCPDGGRWGKAL 729

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           ++L EM      + P+ +T  + + AC   G+ +  R +  M
Sbjct: 730 ELLEEM--AWRGIAPNAVTHESALAACGERGRDEADRVLADM 769


>gi|159466206|ref|XP_001691300.1| protein with PPR repeats [Chlamydomonas reinhardtii]
 gi|158279272|gb|EDP05033.1| protein with PPR repeats [Chlamydomonas reinhardtii]
          Length = 1156

 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 200/423 (47%), Gaps = 28/423 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFF--NVCKSQKAIKEAFRFFKL----VP 88
           L ++G     + LL+++ +  L  + K +H   F   VC + KA K A  F K+    V 
Sbjct: 154 LSKRGEFDTLLRLLQELNKPMLEVVCKRWHYSSFIEEVCLTMKA-KPAVVFAKIAAPYVS 212

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P  + F  ++  CA  +D +    V+ L +++G+  D ++ TTLI  C   G VD  + 
Sbjct: 213 KPA-ALFMAVLKACARCRDLDAGMTVVELARKSGVTVDVQMMTTLIKVCKAVGNVDKAYR 271

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQ---------------VAKAFGAYGIMRSKNV 193
           V+ EM  A +  + H YGALI  CA+A +               + +AF       +  V
Sbjct: 272 VYLEMRAAQLRIDSHVYGALIATCAEAMKRDLTVVHERKDQYVLLERAFQYVADAEAAGV 331

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
                V+N+L+   G+SG ++RAF+VL  M  +   +     T G+L+++C  A Q ++A
Sbjct: 332 TLQAPVWNSLMVCAGRSGELNRAFEVLTMM--QQRGIGASATTYGSLIESCVCARQPEKA 389

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCC--SQTGDWEFACSVYDDMTK-KGVIPDEVFLSAL 310
             V+++      +   ++YT A++ C     G W+ A ++Y  + +   V PD+ F +  
Sbjct: 390 LRVFEVALHKGFESEVKLYTQALSACMLPFPGAWDRAQAIYSALQRCTSVRPDKKFFACF 449

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           +  AG  G++E  FE+L E   +GI     S S ++ AC +  N   A  +Y+      +
Sbjct: 450 MAVAGRCGRMEVVFELLTEMAAEGIRPSSTSVSGIIHACLDQGNVALARRVYDLCAKQSV 509

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P  S  N ++       +  + + +L DM + G  PN  TY I++ ACE  D   +   
Sbjct: 510 YPVPSQFNRMMDVYASEFRFGEVVSLLCDMVAAGRQPNLNTYRIIINACEVTDQAGLAFQ 569

Query: 431 LLS 433
           + +
Sbjct: 570 VFA 572



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 35/199 (17%), Positives = 75/199 (37%), Gaps = 15/199 (7%)

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           ++   +  C++  D +   +V +   K GV  D   ++ LI      G V+ A+ +  E 
Sbjct: 217 LFMAVLKACARCRDLDAGMTVVELARKSGVTVDVQMMTTLIKVCKAVGNVDKAYRVYLEM 276

Query: 331 KNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPTVS 375
           +   + +    Y +L+  C+ A                  ++A +     ++  +     
Sbjct: 277 RAAQLRIDSHVYGALIATCAEAMKRDLTVVHERKDQYVLLERAFQYVADAEAAGVTLQAP 336

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
             N+L+       +L +  EVL+ M+  G+  +  TY  L+ +C      E  L +   A
Sbjct: 337 VWNSLMVCAGRSGELNRAFEVLTMMQQRGIGASATTYGSLIESCVCARQPEKALRVFEVA 396

Query: 436 KEDGVIPNLVMFKCIIGMC 454
              G    + ++   +  C
Sbjct: 397 LHKGFESEVKLYTQALSAC 415


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 190/379 (50%), Gaps = 6/379 (1%)

Query: 77  IKEAFRFFK--LVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           +KEA RF    L     LS  ++ +L++      ++  A ++LR ++   ++ +  +Y+ 
Sbjct: 144 VKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSM 203

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           +I    K   VD  ++++ EMV  GI P+V TY  L+ G    GQ+ +A      M  +N
Sbjct: 204 IIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLEN 263

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + PD   +  L+ A  + G V  A +VLA M      V+ D +    LM       +V+ 
Sbjct: 264 INPDIYTYTILVDALCKEGKVKEAENVLAVMVKAC--VNLDVVVYSTLMDGYCLVNEVNN 321

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A+ V+  + +  +      Y+I IN   +    + A ++++++ +K ++PD V  ++LID
Sbjct: 322 AKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLID 381

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               +G++   +++  E  ++G    +I+Y++L+ A     +  +A+ L+  MK   ++P
Sbjct: 382 CLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRP 441

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V T   L+  LC   +L   +E   D+ + G C N  TY++++    ++  ++  L L 
Sbjct: 442 NVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQ 501

Query: 433 SQAKEDGVIPNLVMFKCII 451
           S+ +++G I + V F+ +I
Sbjct: 502 SRMEDNGCISDAVTFEIMI 520



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 160/366 (43%), Gaps = 3/366 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T N++++          AF  +  + + G + +     TL+      GKV      
Sbjct: 91  PDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRF 150

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +++  G   +  +YG LI+G  K G+   A      +   +++P+ V+++ +I    +
Sbjct: 151 HDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCK 210

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              VD A+D+  EM  +   + PD +T   L+      GQ++RA ++   +   NI    
Sbjct: 211 DTLVDEAYDLYTEMVGK--GISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDI 268

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YTI ++   + G  + A +V   M K  V  D V  S L+D      +V  A  +   
Sbjct: 269 YTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYT 328

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G++  +  YS ++      K   +AL L+E +    + P   T  +LI  LC   +
Sbjct: 329 MTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGR 388

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +    ++  +M   G  P+ ITY+ L+ A  +   ++  + L ++ K+  + PN+  F  
Sbjct: 389 ISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTI 448

Query: 450 II-GMC 454
           ++ G+C
Sbjct: 449 LLDGLC 454



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/423 (20%), Positives = 171/423 (40%), Gaps = 27/423 (6%)

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+ M +    P+   +  ++       +   A   Y  M    V+PD    N +I     
Sbjct: 46  FNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCH 105

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V  AF  ++++    +   P+ IT+  LMK     G+V  A   +  +     + + 
Sbjct: 106 FGQVVLAFSGVSKILKLGY--QPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSG 163

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN   + G+   A  +   + +  + P+ V  S +ID       V+ A+++  E
Sbjct: 164 ISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTE 223

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +GIS  +++YS L+          +A++L   M    + P + T   L+ ALC   +
Sbjct: 224 MVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGK 283

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +   VL+ M    +  + + YS L+      ++V     +     + GV P++  +  
Sbjct: 284 VKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSI 343

Query: 450 II-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 507
           +I G+C  +R ++A  L E                      ++++ +V  T+    ++  
Sbjct: 344 MINGLCKIKRVDEALNLFEE---------------------IHQKNMVPDTVTYTSLIDC 382

Query: 508 VLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIV 567
           +    ++ Y  D+ + +++  G   D +  +NL   +   G  D RA +L  +     I 
Sbjct: 383 LCKSGRISYVWDLFDEMLDR-GQPPDVITYNNLIDALCKNGHLD-RAIALFNKMKDQAIR 440

Query: 568 PCV 570
           P V
Sbjct: 441 PNV 443


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 212/449 (47%), Gaps = 14/449 (3%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDM--ERKGLLDMDKVYHAR----FFNVCKSQKAI 77
            + SYN L++    + R  E ++LL  M  +R G    D V +      FF    S KA 
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+N +++    ++  + A +VL  + + G+  DC  Y +++   
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
             SG+         +M + G+EP+V TY  L+D   K G+  +A   +  M  + +KP+ 
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             +  L+      GA+     +L  M    + + PDH     L+ A AN G+VD+A  V+
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHYVFSILICAYANQGKVDQAMLVF 394

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             + +  +      Y   I    ++G  E A   ++ M  +G+ P  +  ++LI      
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 454

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            K E A E++ E  ++GI +  I ++S++ +        ++ +L+E M  I +KP V T 
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N LI   C   ++ + M++LS M S+GL PNT+TYS L+    +   +E  L+L  + + 
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574

Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTL 464
            GV P+++ +  I+ G+  +RR   A+ L
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKEL 603



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 191/425 (44%), Gaps = 12/425 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFF--- 84
           LH Y      G+  E I  L+ M   G+ + D V ++   + +CK+ + + EA + F   
Sbjct: 273 LHGY---CSSGQPKEAIGFLKKMRSDGV-EPDVVTYSLLMDYLCKNGRCM-EARKIFDSM 327

Query: 85  -KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K    P ++T+  L+   A+         +L L+   G+  D  +++ LI   A  GKV
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKV 387

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D    VF +M   G+ PN  TYGA+I    K+G+V  A   +  M  + + P  +V+N+L
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I         +RA +++ EM      +  + I   +++ +    G+V  + ++++++ + 
Sbjct: 448 IHGLCTCNKWERAEELILEMLD--RGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRI 505

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            +K     Y   IN     G  + A  +   M   G+ P+ V  S LI+      ++E A
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             + +E ++ G+S  II+Y+ ++      +    A ELY  +     +  +ST N ++  
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC        +++  ++  + L     T++I++ A  +    +    L      +G++PN
Sbjct: 626 LCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685

Query: 444 LVMFK 448
              ++
Sbjct: 686 YWTYR 690



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 162/386 (41%), Gaps = 43/386 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM---RSKNVKPDRVVFNALIT 205
           V   M   G  PNV +Y  L+ G     +  +A     +M   R     PD V +  +I 
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G  D+A+    EM      + PD +T  +++ A   A  +D+A EV         
Sbjct: 205 GFFKEGDSDKAYSTYHEMLD--RGILPDVVTYNSIIAALCKAQAMDKAMEVL-------- 254

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                                      + M K GV+PD +  ++++     +G+ + A  
Sbjct: 255 ---------------------------NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 287

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            L++ ++ G+   +++YS LM          +A ++++ M    LKP ++T   L+    
Sbjct: 288 FLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYA 347

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L +   +L  M   G+ P+   +SIL+ A   +  V+  +++ S+ ++ G+ PN V
Sbjct: 348 TKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAV 407

Query: 446 MFKCIIGMC--SRRYEKARTLNEHVL 469
            +  +IG+   S R E A    E ++
Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQMI 433



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 154/335 (45%), Gaps = 13/335 (3%)

Query: 150 FHEMVNAG---IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           ++ M  AG   + P++ TYG LI  C +AG++   F A G +  K  + D + F  L+  
Sbjct: 72  YNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 131

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                    A D++     E+  + P+  +   L+K   +  +   A E+  M+      
Sbjct: 132 LCADKRTSDAMDIVLRRMTELGCI-PNVFSYNILLKGLCDENRSQEALELLHMMADDRGG 190

Query: 267 GTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G+P     YT  IN   + GD + A S Y +M  +G++PD V  +++I     A  ++ A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250

Query: 324 FEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
            E+L      G+    ++Y+S++ G CS+ +  ++A+   + M+S  ++P V T + L+ 
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP-KEAIGFLKKMRSDGVEPDVVTYSLLMD 309

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC   +  +  ++   M   GL P   TY  LL     K  +     LL     +G+ P
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 369

Query: 443 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477
           +  +F  +I  C+  Y     +++ +L F+  R Q
Sbjct: 370 DHYVFSILI--CA--YANQGKVDQAMLVFSKMRQQ 400


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 203/400 (50%), Gaps = 17/400 (4%)

Query: 54  KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113
           KGL    +V+ A +F+     K + + F+  ++       ++  L++      +++ A Q
Sbjct: 136 KGLCLKGEVHKALYFH----DKVVAQGFQLDQV-------SYGTLINGLCRVGETKAAVQ 184

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           +LR V    ++ +  +Y+T+I +  K   V+  F+++ EMV+  I P+V TY +LI G  
Sbjct: 185 LLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFC 244

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
             G++  A   +  M S N+ P+   F+ LI    + G V  A +VLA M  +   V  D
Sbjct: 245 VVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKK--NVKLD 302

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSV 291
            +T  +LM       QV++A+ ++ ++ +  +  TP+V  Y+I IN   +    + A  +
Sbjct: 303 VVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGV--TPDVWSYSIMINGFCKIKMVDEAMKL 360

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           +++M  K + P+ V  ++L+D    +G+   A E++ E  ++G    II+Y+S++ A   
Sbjct: 361 FEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICK 420

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
             +  KA+ L   +K   ++P + T   LI  LC   +L    +V  D+   G  PN  T
Sbjct: 421 NNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYT 480

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           Y+ L+     K   + GL +LS+ K++G IPN + ++ +I
Sbjct: 481 YTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILI 520



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 184/382 (48%), Gaps = 4/382 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T N+LM+  +     + +F V   + + G   D   +T LI      G+V      
Sbjct: 91  PDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYF 150

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             ++V  G + +  +YG LI+G  + G+   A      +  K V+P+ V+++ +I +  +
Sbjct: 151 HDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCK 210

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              V+ AFD+  EM ++   + PD +T  +L+      G++  A +++  +   NI    
Sbjct: 211 DKLVNDAFDLYCEMVSK--RISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNV 268

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             ++I I+   + G    A +V   M KK V  D V  ++L+D      +V  A  +   
Sbjct: 269 YTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNV 328

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G++  + SYS ++      K   +A++L+E M   ++ P V T N+L+  LC   +
Sbjct: 329 MAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGR 388

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
               +E++ +M   G   N ITY+ +L A  + + V+  ++LL++ KE G+ P++  +  
Sbjct: 389 TSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTV 448

Query: 450 II-GMCS-RRYEKARTLNEHVL 469
           +I G+C   R + A+ + E +L
Sbjct: 449 LINGLCKVGRLDDAQKVFEDLL 470



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 127/280 (45%), Gaps = 4/280 (1%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           ++   N  P  + F  ++ +  ++     A  +  +M  E + + PD IT   LM   + 
Sbjct: 48  LLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQM--EFNGIKPDFITCNLLMNCFSQ 105

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G +  +  V+  I K         +TI I      G+   A   +D +  +G   D+V 
Sbjct: 106 LGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVS 165

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
              LI+     G+ +AA ++L+    + +   ++ YS+++ +    K    A +LY  M 
Sbjct: 166 YGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMV 225

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           S ++ P V T ++LI+  C   +L   +++ + M S  + PN  T+SIL+    ++  V 
Sbjct: 226 SKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVR 285

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
               +L+   +  V  ++V +  ++ G C  ++  KA++L
Sbjct: 286 EAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSL 325


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 192/414 (46%), Gaps = 20/414 (4%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQ----GRISECID----LLEDMERKGLLDMDKVYHARF 67
           G+   +A D  ++   Y RL +Q    GR     D       +M  + LL++ +    R 
Sbjct: 80  GRQNTHAGDPRQKNQGYRRLWQQVTQVGRGQRLGDHEGSAFSEMTVEDLLEVVR----RL 135

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKAD 126
                + KAI +   +F    +  L+     ++     + ++  F  LR + ++  L   
Sbjct: 136 PPEASAVKAIGQGLYYFD---SGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPL 192

Query: 127 CKL--YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
           C    YTT+I+ C    ++    E+  EM + GI+ NVHTY AL++ C K  ++  A   
Sbjct: 193 CNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDV 252

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
           Y  M ++   P+ V +N LI   G++GA + A  VL  +  E   +DP+  T   ++ AC
Sbjct: 253 YRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDAL--ERQGIDPEIRTYNTVIIAC 310

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
             +GQ   A  +Y+ +     + T   YT  I+   + G  + A  ++ DM ++G   + 
Sbjct: 311 NMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNV 370

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           +  S+LI     AG+ E A E+ +E   +G    +++Y+SL+ AC+    W+KA E++E 
Sbjct: 371 ITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQ 430

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           M+    KP   T   LI A        + +     MK+    P+++ Y+ ++ A
Sbjct: 431 MQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGA 484



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 141/280 (50%), Gaps = 8/280 (2%)

Query: 196 DRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQV 250
           D     AL+    +SG V RA   FD L  ++ + H + P  + +T   ++  C    Q+
Sbjct: 153 DSGALAALLKELNKSGHVRRAQELFDWLRGLD-DSHDLYPLCNTMTYTTMISQCGTQQQL 211

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
            RA E+   +    I+     Y+  +N C +  + + A  VY  M  +G  P+ V  + L
Sbjct: 212 RRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTL 271

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID  G  G  E A  +L   + QGI   I +Y++++ AC+ +   Q+AL +YE M +   
Sbjct: 272 IDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGA 331

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           +PT +T  ALI+A     QL + +++  DM   G   N ITYS L+ ACE+    E+ L 
Sbjct: 332 QPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALE 391

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468
           L  +   +G  PN+V +  +I  C++  ++EKA+ + E +
Sbjct: 392 LFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQM 431



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 134/289 (46%), Gaps = 7/289 (2%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLS 93
           Q ++   ++L+ +M  +G+      Y A   NVC     +  A   ++ +      P L 
Sbjct: 208 QQQLRRALELVAEMRSRGIQCNVHTYSA-LMNVCIKGNELDLALDVYRQMLAEGCTPNLV 266

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+N L+ V   +   E A +VL  ++  G+  + + Y T+I  C  SG+      ++  M
Sbjct: 267 TYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERM 326

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           + AG +P   TY ALI    K GQ+ +A   +  M  +  + + + +++LI+AC ++G  
Sbjct: 327 LAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRW 386

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + A ++  EM+ E     P+ +T  +L+ ACA   Q ++A+E+++ +     K     + 
Sbjct: 387 ELALELFREMHTEG--CRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFG 444

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I    + G W  A + ++ M      PD V  + ++      G V A
Sbjct: 445 GLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGLVWA 493



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 143/355 (40%), Gaps = 45/355 (12%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMV----NAGIEP--NVHTYGALIDGCAKAGQVA 179
           D      L+    KSG V    E+F  +     +  + P  N  TY  +I  C    Q+ 
Sbjct: 153 DSGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLR 212

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           +A      MRS+ ++ +   ++AL+  C +   +D A DV  +M AE     P+ +T   
Sbjct: 213 RALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEG--CTPNLVTYNT 270

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+      G  + A  V   + +  I      Y   I  C+ +G  + A  +Y+ M   G
Sbjct: 271 LIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAG 330

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
             P     +ALI   G  G+++ A +I Q+   +G    +I+YSSL+ AC  A  W+ AL
Sbjct: 331 AQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELAL 390

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           EL+                                    +M + G  PN +TY+ L+ AC
Sbjct: 391 ELFR-----------------------------------EMHTEGCRPNVVTYNSLIAAC 415

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472
            +    E    +  Q +  G  P+ V F  +I    R   + +A T  E + + N
Sbjct: 416 AQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHN 470



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 126/262 (48%), Gaps = 9/262 (3%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLD---MDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +H+Y+ L+        +DL  D+ R+ L +    + V +    +V     A +EA R   
Sbjct: 230 VHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLD 289

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +     +P + T+N ++  C  S  ++ A ++   +  AG +     YT LI+   K+G
Sbjct: 290 ALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNG 349

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++D   ++F +MV  G E NV TY +LI  C KAG+   A   +  M ++  +P+ V +N
Sbjct: 350 QLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYN 409

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +LI AC Q    ++A ++  +M  +     PD +T G L+ A   AG   RA   ++ + 
Sbjct: 410 SLIAACAQGAQWEKAQEMFEQM--QHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMK 467

Query: 262 KYNIKGTPEVYTIAINCCSQTG 283
            +N +    VY   +    +TG
Sbjct: 468 AHNCRPDSVVYNTIVGALWKTG 489



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 44/235 (18%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A   +  L +YN LI    + G   E I +L+ +ER+G+    + Y+      C      
Sbjct: 258 AEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVII-ACNMSGQA 316

Query: 78  KEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +EA R ++ +      PT +T+  L+S    +   + A Q+ + +   G + +   Y++L
Sbjct: 317 QEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSL 376

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA-------------------- 173
           I+ C K+G+ +   E+F EM   G  PNV TY +LI  CA                    
Sbjct: 377 ISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGC 436

Query: 174 ---------------KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                          +AG   +A  A+  M++ N +PD VV+N ++ A  ++G V
Sbjct: 437 KPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGALWKTGLV 491



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 118/278 (42%), Gaps = 35/278 (12%)

Query: 303 DEVFLSALI---DFAGHAGKVEAAFEILQ---EAKNQGISVGIISYSSLMGACSNAKNWQ 356
           D   L+AL+   + +GH  + +  F+ L+   ++ +       ++Y++++  C   +  +
Sbjct: 153 DSGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLR 212

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +ALEL   M+S  ++  V T +AL+     G++L   ++V   M + G  PN +TY+ L+
Sbjct: 213 RALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLI 272

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 476
               +    E  + +L   +  G+ P +  +  +I  C+                 SG+ 
Sbjct: 273 DVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNM----------------SGQA 316

Query: 477 QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSA 532
           Q        AL +Y   + AG  PT    + ++       QL     I + +V   G   
Sbjct: 317 QE-------ALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRR-GCER 368

Query: 533 DALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
           + +  S+L S  +  G ++  A  L  E  + G  P V
Sbjct: 369 NVITYSSLISACEKAGRWE-LALELFREMHTEGCRPNV 405


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 178/345 (51%), Gaps = 2/345 (0%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           ++  A ++LR++++   + +  +Y T+I    K   V+  ++++ EM   GI PNV TY 
Sbjct: 130 ETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYS 189

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI G   AGQ+ +AFG    M  KN+ P+   +  L+ A  + G V  A ++LA M  E
Sbjct: 190 TLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKE 249

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V P+ ++   LM      G+V  A++++  + +  +      Y I I+   ++   +
Sbjct: 250 --GVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVD 307

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A ++  ++  K ++P+ V  S+LID     G++ +A ++L+E  ++G    +++Y+SL+
Sbjct: 308 EAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLL 367

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A    +N  KA  L+  MK   ++P   T  ALI  LC G +     ++   +   G  
Sbjct: 368 DALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCR 427

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            N  TY++++    ++  ++  L + S+ +E+G IP+ V F+ II
Sbjct: 428 INVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIII 472



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 181/382 (47%), Gaps = 4/382 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T N+L++          +F VL  + + G + +     TL+      G+V      
Sbjct: 43  PDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHF 102

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             ++V  G + +  +Y  L++G  K G+   A     ++  ++ +P+ V++N +I    +
Sbjct: 103 HDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCK 162

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              V+ A+D+ +EM+A    + P+ IT   L+     AGQ+  A  +   +   NI    
Sbjct: 163 DKLVNEAYDLYSEMDAR--GIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNV 220

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YTI ++   + G  + A ++   MTK+GV P+ V  + L+D     G+V+ A ++   
Sbjct: 221 YTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHT 280

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G++  + SY+ ++     +K   +A+ L   +    + P   T ++LI   C   +
Sbjct: 281 MVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGR 340

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +   +++L +M   G   + +TY+ LL A  +  +++    L  + KE G+ PN   +  
Sbjct: 341 ITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTA 400

Query: 450 II-GMCS-RRYEKARTLNEHVL 469
           +I G+C   R++ A+ L +H+L
Sbjct: 401 LIDGLCKGGRHKNAQKLFQHLL 422



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 165/378 (43%), Gaps = 48/378 (12%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I    +   ++E  DL  +M+ +G+      Y    +  C + + + EAF     +
Sbjct: 153 YNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLM-EAFGLLNEM 211

Query: 88  P----NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                NP + T+ +LM ++C   K  E A  +L ++ + G+K +   Y TL+      G+
Sbjct: 212 ILKNINPNVYTYTILMDALCKEGKVKE-AKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGE 270

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           V    ++FH MV  G+ PNV++Y  +ID   K+ +V +A      +  KN+ P+ V +++
Sbjct: 271 VQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSS 330

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    + G +  A D+L EM     P D   +T  +L+ A      +D+A         
Sbjct: 331 LIDGFCKLGRITSALDLLKEMYHRGQPADV--VTYTSLLDALCKNQNLDKA--------- 379

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                                      +++  M ++G+ P++   +ALID     G+ + 
Sbjct: 380 --------------------------TALFMKMKERGIQPNKYTYTALIDGLCKGGRHKN 413

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A ++ Q    +G  + + +Y+ ++          +AL +   M+     P   T   +I 
Sbjct: 414 AQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIR 473

Query: 383 ALCDGDQLPKTMEVLSDM 400
           +L + DQ  K  ++L +M
Sbjct: 474 SLFEKDQNDKAEKLLHEM 491



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 133/315 (42%), Gaps = 4/315 (1%)

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P +  +  ++    K      A   +  M+ K ++PD    N LI      G +  +F V
Sbjct: 8   PPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTV 67

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L ++    +   P+ IT+  LMK     G+V ++   +  +     +     Y   +N  
Sbjct: 68  LGKILKLGY--QPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGL 125

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            + G+   A  +   +  +   P+ V  + +ID       V  A+++  E   +GI   +
Sbjct: 126 CKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNV 185

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           I+YS+L+     A    +A  L   M    + P V T   L+ ALC   ++ +   +L+ 
Sbjct: 186 ITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAV 245

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRR 457
           M   G+ PN ++Y+ L+       +V+    +     + GV PN+  +  +I  +C S+R
Sbjct: 246 MTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKR 305

Query: 458 YEKARTLNEHVLSFN 472
            ++A  L   VL  N
Sbjct: 306 VDEAMNLLREVLHKN 320



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 9/217 (4%)

Query: 18  HANYAHDVSEQLHSYN----RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H      V+  ++SYN    RL +  R+ E ++LL ++  K ++     Y +     CK 
Sbjct: 279 HTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKL 338

Query: 74  QKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            + I  A    K + +      + T+  L+     +++ + A  +   ++E G++ +   
Sbjct: 339 GR-ITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           YT LI    K G+     ++F  ++  G   NV TY  +I G  K G + +A      M 
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKME 457

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
                PD V F  +I +  +    D+A  +L EM A+
Sbjct: 458 ENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAK 494


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 234/518 (45%), Gaps = 40/518 (7%)

Query: 31   SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            +YN L    I  G + E + LLE M++   +     Y      + K+ + + EA    + 
Sbjct: 530  TYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGR-LDEAVSLLRE 588

Query: 87   VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +      P++ T++ LM+        E +  +   +   G  AD   Y+ +I    KS  
Sbjct: 589  MEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDD 648

Query: 143  VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            VD   +VF  M   G+EP +  Y  L+    K  ++  A   +  ++  ++ PD  V+N 
Sbjct: 649  VDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNI 708

Query: 203  LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
            ++    +S  VD A  ++  M  +   + PD  T  +L+     +G   R  E + M  K
Sbjct: 709  MVNGLVKSNRVDEACKLVDSMKNQ--NILPDLFTYTSLLDGLGKSG---RLEEAFNMFTK 763

Query: 263  YNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
               +G  P+V  YT  ++   + G    A  ++  M KK  +PD V  S+LID  G  G+
Sbjct: 764  MTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGR 823

Query: 320  VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
            VE A+   + + ++G +  +  YSSL+ +        +ALEL+E M+  +  P + T N 
Sbjct: 824  VEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNN 883

Query: 380  LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
            L++ L    +L    ++L +M+ +G  P+ +TY+IL+    +   V+       + KE G
Sbjct: 884  LLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKG 943

Query: 440  VIPNLVMFKCII---GMCSRRYE--------KARTLNEHVLSFNS-----GRPQIENKWT 483
            ++P+++ F  +I   G   +  E        +    N  V+++N      GR    ++  
Sbjct: 944  IVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHE-- 1001

Query: 484  SLALMVYREAIVAGTIP---TVEVVSKVLGCLQLPYNA 518
              A M++ E  V G +P   T+ ++ ++L   +  ++A
Sbjct: 1002 --AAMIFHEMKVKGCMPDGITIGIMKRILSVREQQFHA 1037



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 214/470 (45%), Gaps = 40/470 (8%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
            L + GR+ E + LL +ME++G       Y +   +  K  +  +    F ++V       
Sbjct: 573  LGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVAD 632

Query: 92   LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
            +ST++++++    S D + A  V   ++E G++     Y TL+++  K  K+D   ++F+
Sbjct: 633  VSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFN 692

Query: 152  EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            E+  + + P+   Y  +++G  K+ +V +A      M+++N+ PD   + +L+   G+SG
Sbjct: 693  ELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSG 752

Query: 212  AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             ++ AF++  +M  E H  +PD +   +LM      G++  A  +++ + K         
Sbjct: 753  RLEEAFNMFTKMTEEGH--EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVT 810

Query: 272  YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
            Y+  I+   + G  E A   +++   KG  P+    S+LID  G  G V+ A E+ +E +
Sbjct: 811  YSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQ 870

Query: 332  NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----------------------- 368
             +     I++Y++L+   + A     A +L E M+ +                       
Sbjct: 871  RRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVD 930

Query: 369  -------KLK-----PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
                   ++K     P V T  +LI +L   D+L +  E+   M+  G  P+ +TY++L+
Sbjct: 931  EAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLI 990

Query: 417  VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 466
                R   V    M+  + K  G +P+ +    +  + S R ++   L E
Sbjct: 991  DILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILSVREQQFHALEE 1040



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 135/610 (22%), Positives = 251/610 (41%), Gaps = 64/610 (10%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHA-RFFNVCKS 73
           G+   Y+H V        RL         + +L  M ++G  + M  +    R F    +
Sbjct: 173 GQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNN 232

Query: 74  QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
                E F   K    NP+ + +N ++ +         A  V   + +  ++ D + +  
Sbjct: 233 VSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRI 292

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
            + +  +SG++D   E   EM+ +GI+P VHT+  LID   K+G + +A   +  M++  
Sbjct: 293 FVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLR 352

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
             P+ V +  L+    ++G ++ A +V  EM    +   PD I    L+     AG+ D 
Sbjct: 353 CSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKE--NNCSPDAIAYNTLIDGLGKAGEADM 410

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A  ++K +    +      Y I I+   + G    A  ++ D+ ++G +PD    + LID
Sbjct: 411 ACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLID 470

Query: 313 FAGHAGKVEAAFEILQEAKNQG-------------------------------ISVGIIS 341
             G  G+++    I++E   +G                                S+G I+
Sbjct: 471 VLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEIT 530

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           Y++LM A  +  +  +A++L E MK  +  PTV T   L+  L    +L + + +L +M+
Sbjct: 531 YNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREME 590

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 461
             G  P+ +TYS L+ +  ++D  E  L L  +    G + ++  +  +I    +  +  
Sbjct: 591 KQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVD 650

Query: 462 RTLNEHVLSFNSG-RPQIENKWTSL-----------ALMVYREAIVAGTIPTVEVVSKVL 509
           + L+        G  P + N  T L           AL ++ E   +  +P   V + ++
Sbjct: 651 QALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMV 710

Query: 510 GCLQLPYNADIRERLVENLGVSADALKRSNL-------CSLIDGFGEYD--PRAFSLLEE 560
             L      D   +LV       D++K  N+        SL+DG G+      AF++  +
Sbjct: 711 NGLVKSNRVDEACKLV-------DSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTK 763

Query: 561 AASFGIVPCV 570
               G  P V
Sbjct: 764 MTEEGHEPDV 773



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/579 (21%), Positives = 238/579 (41%), Gaps = 51/579 (8%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +HS+NR    GR+    + +++M + G+      +      + KS   I EA +FF  + 
Sbjct: 294 VHSFNR---SGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGN-IDEACKFFNGMK 349

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           N    P + T+  L++  A +   E A +V   ++E     D   Y TLI    K+G+ D
Sbjct: 350 NLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEAD 409

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +F EM + G+ PN+ TY  +I    KAG+  +A+  +  ++ +   PD   +N LI
Sbjct: 410 MACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLI 469

Query: 205 TACGQSGAVDRAFDVLAEM-----------------NAEVHPVDPD------------HI 235
              G+ G +D+   ++ EM                    +   D               I
Sbjct: 470 DVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLGEI 529

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   LM A  + G VD A ++ +++ K+    T   YT  ++   + G  + A S+  +M
Sbjct: 530 TYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREM 589

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            K+G  P  V  S+L+       + E +  +  E   +G    + +YS ++     + + 
Sbjct: 590 EKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDV 649

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +AL+++  MK   ++P +     L+++L   +++   +++ ++++   L P+T  Y+I+
Sbjct: 650 DQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIM 709

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 475
           +    + + V+    L+   K   ++P+L  +  ++    +        N        G 
Sbjct: 710 VNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGH 769

Query: 476 PQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER 523
                 +TSL            AL+++R       +P V   S ++  L      +    
Sbjct: 770 EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYY 829

Query: 524 LVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEE 560
             EN              SLID FG+     RA  L EE
Sbjct: 830 FFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEE 868


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 165/328 (50%), Gaps = 3/328 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIM 188
           ++ LI+   +SG  D   +VF  M ++G++PN+ TY A+ID C K G    +A   +  M
Sbjct: 223 FSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEM 282

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               V+PDR+ FN+L+  CG+ G  + A ++ +EM      ++ D  T   L+ A    G
Sbjct: 283 LRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEM--LYRGIEQDIFTYNTLLDAVCKGG 340

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           Q+D A ++   + + +I      Y+  I+  ++ G  + A +++++M    +  D V  +
Sbjct: 341 QMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYN 400

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            L+      G+ E A  + +E ++ GI    ++Y++L+G       +++   ++E MK+ 
Sbjct: 401 TLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAE 460

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
           ++ P + T + LI     G    + MEV  + K  GL  + + YS L+ A  +   VE  
Sbjct: 461 RIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESA 520

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           +  L +  ++G+ PN+V +  II    R
Sbjct: 521 VSFLDEMTKEGIRPNVVTYNSIIDAFGR 548



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 165/337 (48%), Gaps = 3/337 (0%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEV 149
           T+  F+ L+S    S   + A +V   ++ +GLK +   Y  +I  C K G   +   E+
Sbjct: 219 TVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEI 278

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM+  G++P+  T+ +L+  C + G    A   +  M  + ++ D   +N L+ A  +
Sbjct: 279 FDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCK 338

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D AF +++EM  +   + P+ +T   ++   A AG++D A  ++  +   +I    
Sbjct: 339 GGQMDLAFQIMSEMPRK--HIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDR 396

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   ++  ++ G +E A +V  +M   G+  D V  +AL+   G  GK E    + +E
Sbjct: 397 VSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEE 456

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K + I   +++YS+L+   S    +Q+A+E++   K   LK  V   +ALI ALC    
Sbjct: 457 MKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGL 516

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +   +  L +M   G+ PN +TY+ ++ A  R    E
Sbjct: 517 VESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAE 553



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 198/456 (43%), Gaps = 40/456 (8%)

Query: 15  NGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           N  + N  +  S  + +Y R    G   E I + E M+  GL      Y+A      K  
Sbjct: 213 NEGYGNTVYAFSALISAYGR---SGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGG 269

Query: 75  KAIKEAFRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
                A   F +++ N   P   TFN L++VC      E A  +   +   G++ D   Y
Sbjct: 270 VDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTY 329

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            TL+    K G++D  F++  EM    I PNV TY  +IDG AKAG++ +A   +  M+ 
Sbjct: 330 NTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKF 389

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
            ++  DRV +N L++   + G  + A +V  EM  E   +  D +T  AL+      G+ 
Sbjct: 390 ASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEM--ESSGIKKDAVTYNALLGGYGKQGKY 447

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           +  + V++ +    I      Y+  I+  S+ G ++ A  V+ +  K G+  D V  SAL
Sbjct: 448 EEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSAL 507

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE-LYE----HM 365
           ID     G VE+A   L E   +GI   +++Y+S++ A   + + +  ++  YE     M
Sbjct: 508 IDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKM 567

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPK-------------------------TMEVLSDM 400
            S  LK       + +    D +Q+ K                          + V   M
Sbjct: 568 SSSSLKVVEDATESEVGDKED-NQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKM 626

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
             L + PN +T+S +L AC R +  E   MLL + +
Sbjct: 627 HELDIKPNVVTFSAILNACSRCNSFEDASMLLEELR 662



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 108/226 (47%), Gaps = 3/226 (1%)

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           A++      GQV+ A+ V++         T   ++  I+   ++G  + A  V++ M   
Sbjct: 190 AMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSS 249

Query: 299 GVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           G+ P+ V  +A+ID  G  G     A EI  E    G+    I+++SL+  C     W+ 
Sbjct: 250 GLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEA 309

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A  L+  M    ++  + T N L+ A+C G Q+    +++S+M    + PN +TYS ++ 
Sbjct: 310 ARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVID 369

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 461
              +   ++  L L ++ K   +  + V +  ++ + ++  R+E+A
Sbjct: 370 GYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEA 415



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 150/352 (42%), Gaps = 42/352 (11%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+    + GR  E +++ ++ME  G+   D V +         Q   +E  R F+ 
Sbjct: 398 SYNTLLSIYAKLGRFEEALNVCKEMESSGI-KKDAVTYNALLGGYGKQGKYEEVKRVFEE 456

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P L T++ L+ V +     + A +V R  ++AGLKAD  LY+ LI    K+G 
Sbjct: 457 MKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGL 516

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPD-RVVF 200
           V++      EM   GI PNV TY ++ID   ++G         Y    SK      +VV 
Sbjct: 517 VESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLKVVE 576

Query: 201 NALITACG--QSGAVDRAFDVLAEMNA---------------------EVHPVD--PDHI 235
           +A  +  G  +   + + F  LA                         ++H +D  P+ +
Sbjct: 577 DATESEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVV 636

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSVYD 293
           T  A++ AC+     + A  + + +  ++     +VY +A       GD  W  A S++D
Sbjct: 637 TFSAILNACSRCNSFEDASMLLEELRLFD----NQVYGVAHGLLMGYGDNVWVQAQSLFD 692

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           ++ +        F +AL D   H G+   A  ++ E K + +   + S S L
Sbjct: 693 EVKQMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEGKRRHVWENMWSNSCL 744


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 162/328 (49%), Gaps = 3/328 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIM 188
           ++ LI+   +SG  +   +VF  M + G+ PN+ TY A+ID C K G +  K    +  M
Sbjct: 228 FSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGM 287

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
            S  V+PDR+ FN+L+  C + G  + A  + + M  +   +D D  T   L+ A    G
Sbjct: 288 LSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDK--GIDQDIFTYNTLLDAVCKGG 345

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           Q+D A E+   +   NI      Y+  I+  ++ G  + A +++++M   GV  D V  +
Sbjct: 346 QMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYN 405

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            L+      G+ E A ++ +E +N GI   +++Y++L+        + +   ++E MK  
Sbjct: 406 TLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRG 465

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
           ++ P + T + LI     G    + MEV  + K  GL  + + YS L+ A  +   VE  
Sbjct: 466 RVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESS 525

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           + LL +  ++G+ PN+V +  II    R
Sbjct: 526 VTLLDEMTKEGIRPNVVTYNSIIDAFGR 553



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 196/432 (45%), Gaps = 35/432 (8%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN---PTL 92
           R G  +E I + + M+  GL+     Y+A      K     K+    F  ++ N   P  
Sbjct: 237 RSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDR 296

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            TFN L++VC+     E A ++   + + G+  D   Y TL+    K G++D  FE+  E
Sbjct: 297 ITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSE 356

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M    I PNV TY  +IDG AK G++  A   +  M+   V  DRV +N L++   + G 
Sbjct: 357 MPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGR 416

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
            ++A DV  EM  E   +  D +T  AL+       + D  R V++ + +  +      Y
Sbjct: 417 FEQALDVCKEM--ENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTY 474

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +  I+  S+ G ++ A  V+ +  + G+  D V  SALID     G VE++  +L E   
Sbjct: 475 STLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTK 534

Query: 333 QGISVGIISYSSLMGACSNAKNWQ---------KALELYEHMKSIKLKPTVSTM------ 377
           +GI   +++Y+S++ A   + + Q          AL++ E + SI ++  + +       
Sbjct: 535 EGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQV-ESLSSIVVQEAIESQAADKED 593

Query: 378 NALITAL--------CDGDQLPKT-----MEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           N +I           C+     K      + V   M  L + PN +T+S +L AC R D 
Sbjct: 594 NRIIEIFGKLAAEKACEAKNSGKQEILCILGVFQKMHELKIKPNVVTFSAILNACSRCDS 653

Query: 425 VEVGLMLLSQAK 436
            E   MLL + +
Sbjct: 654 FEDASMLLEELR 665


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 177/364 (48%), Gaps = 4/364 (1%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           ++  A  +LR V    ++ +  +Y+T+I    K   V+  F+++ EMV+ GI PNV TY 
Sbjct: 177 ETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYS 236

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           ALI G    GQ+  A   +  M  +N+KPD   FN L+    + G +     V A M  +
Sbjct: 237 ALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQ 296

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              + P+ +T  +LM       +V++A+ +   + +  +    + Y I I+   +    +
Sbjct: 297 --GIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVD 354

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A +++ +M  K +IPD V  ++LID     GK+  A +++ E  ++G+   II+YSS++
Sbjct: 355 EAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSIL 414

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A        KA+ L   +K   ++P + T   LI  LC G +L     +  D+   G  
Sbjct: 415 DALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYN 474

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTL 464
               TY++++     K   +  L LLS+ K++  IP+ V ++ II     + E  KA  L
Sbjct: 475 ITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKL 534

Query: 465 NEHV 468
            E +
Sbjct: 535 REMI 538



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 192/409 (46%), Gaps = 26/409 (6%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSK------------DSEGAFQVLRLVQEA----GLKA 125
           R  +  P P    FN ++     SK            + EG   VL   Q      G   
Sbjct: 66  RLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHFQHPHQLMGYHP 125

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGA 184
           +   +TTLI      G++     +FH+ V A G + +   YG LI G  K G+   A   
Sbjct: 126 NTITFTTLIKGLCLKGQIHQAL-LFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAALDL 184

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
              +    V+P+ V+++ +I    +   V+ AFD+ +EM ++   + P+ +T  AL+   
Sbjct: 185 LRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSK--GISPNVVTYSALISGF 242

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIP 302
              GQ+  A +++  +   NIK  P+VYT  I ++   + G  +   +V+  M K+G+ P
Sbjct: 243 FTVGQLKDAIDLFNKMILENIK--PDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKP 300

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           + V   +L+D      +V  A  IL     +G++  I SY+ L+      K   +A+ L+
Sbjct: 301 NVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLF 360

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           + M    + P V T N+LI  LC   ++   ++++ +M   G+ P+ ITYS +L A  + 
Sbjct: 361 KEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKN 420

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 469
             V+  + LL++ K+ G+ PN+  +  +I G+C   R E A  + E +L
Sbjct: 421 HQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLL 469



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 108/226 (47%), Gaps = 9/226 (3%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF 95
            +++   +L  M ++G+    + Y+      CK +K + EA   FK + +    P + T+
Sbjct: 317 EVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKK-VDEAMNLFKEMHHKHIIPDVVTY 375

Query: 96  NMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           N L+  +C   K S  A +++  + + G+  D   Y++++    K+ +VD    +  ++ 
Sbjct: 376 NSLIDGLCKLGKISY-ALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLK 434

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           + GI PN++TY  LIDG  K G++  A   +  +  K        +  +I      G  D
Sbjct: 435 DQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFD 494

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
            A  +L++M    +   PD +T   ++++  +  + D+A ++ +MI
Sbjct: 495 EALALLSKMKD--NSCIPDAVTYEIIIRSLFDKDENDKAEKLREMI 538



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 41/228 (17%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP + ++N+L+      K  + A  + + +    +  D   Y +LI    K GK+    +
Sbjct: 334 NPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALK 393

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM + G+ P++ TY +++D   K  QV KA      ++ + ++P+   +  LI    
Sbjct: 394 LVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLC 453

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G ++ A ++  ++                                   ++  YNI  T
Sbjct: 454 KGGRLEDAHNIFEDL-----------------------------------LVKGYNI--T 476

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALID 312
              YT+ I+     G ++ A ++   M     IPD    E+ + +L D
Sbjct: 477 VNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFD 524


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 154/334 (46%), Gaps = 12/334 (3%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--------NVHTYGALIDGCAKAGQ 177
           D      L+   AK G +    E+F  + N  +EP        +++TY  +I  C    Q
Sbjct: 234 DSSAMAALLKELAKQGYLKRAVEIFDWLRN--LEPSHELSSLCDLYTYTTMISQCGSHQQ 291

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           + +A      MRS+ +  +   ++AL+  C ++  +D A DV  +M  E     P+ +T 
Sbjct: 292 LRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEE--GCSPNLVTY 349

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+       Q + A +V   + K  I+     Y   I+ C+++G  E A  VY+ M  
Sbjct: 350 NILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLA 409

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            GV P     +ALI   G  G+VE A EI ++   +G    +I+YSSL+ AC  A  W+ 
Sbjct: 410 AGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEM 469

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           ALEL+  M     KP V T N+LI A   G    K  E+   M++ G  P++ITY  L+ 
Sbjct: 470 ALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLIT 529

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           A ER       L    Q +  G  P+  +F  ++
Sbjct: 530 AYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLM 563



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 12/345 (3%)

Query: 50  DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PT--------LSTFNMLM 99
           D  ++GL  +D    A        Q  +K A   F  + N  P+        L T+  ++
Sbjct: 224 DAIKQGLYYLDSSAMAALLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMI 283

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
           S C S +    A +++  ++  G+  +   Y+ L+  C K+ ++D   +V+ +M+  G  
Sbjct: 284 SQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCS 343

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PN+ TY  LID   K  Q  +A      +  + ++ +   +N +I+AC +SG  ++A  V
Sbjct: 344 PNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKV 403

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
             +M A    V P   T  AL+ A    GQV++A E+++ + +   +     Y+  I+ C
Sbjct: 404 YEKMLAA--GVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISAC 461

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            + G WE A  ++  M K+   P+ V  ++LI    H G  E A E+ ++ + QG     
Sbjct: 462 EKAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDS 521

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           I+Y  L+ A      W++AL+ +E M++    P  +  N+L+  L
Sbjct: 522 ITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVL 566



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 136/280 (48%), Gaps = 8/280 (2%)

Query: 196 DRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQV 250
           D     AL+    + G + RA   FD L  +    H +    D  T   ++  C +  Q+
Sbjct: 234 DSSAMAALLKELAKQGYLKRAVEIFDWLRNLEPS-HELSSLCDLYTYTTMISQCGSHQQL 292

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
            RA E+   +    I      Y+  +N C +  + + A  VY  M ++G  P+ V  + L
Sbjct: 293 RRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNIL 352

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID      + E A ++L   + Q I   + +Y++++ AC+ +   ++AL++YE M +  +
Sbjct: 353 IDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGV 412

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           KP+ +T  ALI+A     Q+ K +E+  DM   G   N ITYS L+ ACE+    E+ L 
Sbjct: 413 KPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALE 472

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468
           L S+  ++   PN+V F  +I  CS    +EKA  L E +
Sbjct: 473 LFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQM 512



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 124/266 (46%), Gaps = 17/266 (6%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLD-----------MDKVYHARFFNVCKSQKAI 77
           +H+Y+ L+     +  +DL +D+ ++ L +           +  VY  R    C+ ++A+
Sbjct: 311 VHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKR----CQWEEAV 366

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           K      K      + T+N ++S C  S   E A +V   +  AG+K     YT LI+  
Sbjct: 367 KVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAY 426

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G+V+   E+F +M+  G E NV TY +LI  C KAG+   A   +  M  +N KP+ 
Sbjct: 427 GKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNV 486

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V FN+LI AC   G  ++A ++  +M  +     PD IT   L+ A    GQ  RA + +
Sbjct: 487 VTFNSLIAACSHGGHWEKASELFEQM--QTQGCKPDSITYCGLITAYERGGQWRRALKAF 544

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTG 283
           + +          V+   +    Q+G
Sbjct: 545 EQMQTQGCHPDAAVFNSLMEVLWQSG 570



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 42/230 (18%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIK 78
           S  L +YN LI    ++ +  E + +L+ +E++ +    + Y+       KS   ++A+K
Sbjct: 343 SPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALK 402

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
              +       P+ +T+  L+S        E A ++ R +   G + +   Y++LI+ C 
Sbjct: 403 VYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACE 462

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA------------------------- 173
           K+G+ +   E+F +M     +PNV T+ +LI  C+                         
Sbjct: 463 KAGRWEMALELFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSI 522

Query: 174 ----------KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                     + GQ  +A  A+  M+++   PD  VFN+L+    QSG +
Sbjct: 523 TYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSGVL 572


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 199/414 (48%), Gaps = 10/414 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMS-V 101
           + E+M R+     +  Y+     +C+S  A++EAF F + + +  LS    T+  LM+ +
Sbjct: 267 VFEEMRRRDCAMNEVTYNVMISGLCRS-GAVEEAFGFKEEMVDYGLSPDAFTYGALMNGL 325

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
           C   +  E A  +L  +  +GLK +  +Y TL+    K GK    F++ +EM++AG++PN
Sbjct: 326 CKGGRLKE-AKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPN 384

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
              Y  LI G  K GQ+ +A      M     +PD   ++ L+    Q    D AF++L 
Sbjct: 385 KIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLN 444

Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
           EM      + P+  T G ++      G+   A  + + +    +K    +Y   I   S+
Sbjct: 445 EMRNS--GILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSK 502

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
            G    AC   ++MTK  V+PD    ++LI      G++E A E   + + +G+     +
Sbjct: 503 EGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFT 562

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           YS L+      +N +KA +L + M +  LKP   T   L+      +   K   +L  M 
Sbjct: 563 YSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSML 622

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
             G  P+   Y I++    R +++EV  M+L++ +++G++P+L ++  +I G+C
Sbjct: 623 GSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLC 676



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 116/500 (23%), Positives = 214/500 (42%), Gaps = 14/500 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPNPT 91
            +++G+ +E  D+L +M   G+     +Y      +CK     +A K      K+   P 
Sbjct: 360 FMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPD 419

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T++ LM       D +GAF++L  ++ +G+  +   Y  +I    ++G+      +  
Sbjct: 420 TFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLE 479

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM++ G++PN   Y  LI G +K G ++ A  +   M   NV PD   +N+LI      G
Sbjct: 480 EMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVG 539

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A +  A++  +   + PD  T   L+        +++A ++ + +    +K   + 
Sbjct: 540 RIEEAEEYYAQV--QKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADT 597

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           YT  +    ++ D E   S+   M   G  PD      +I     +  +E AF +L E +
Sbjct: 598 YTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVE 657

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+   +  YSSL+       + +KA+ L + M    L+P +   NALI   C    + 
Sbjct: 658 KNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDIS 717

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   V   + + GL PN +TY+ L+    +  D+     L     + G+ P+  ++  + 
Sbjct: 718 RARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLA 777

Query: 452 GMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
             CS     E+A  L E +  FN G   +     SL   + R     G +   E +  V+
Sbjct: 778 TGCSDAADLEQALFLTEEM--FNRGYAHV-----SLFSTLVRGFCKRGRLQETEKLLHVM 830

Query: 510 GCLQLPYNADIRERLVENLG 529
              ++  NA   E ++   G
Sbjct: 831 MDREIVPNAQTVENVITEFG 850



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 151/341 (44%), Gaps = 2/341 (0%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A QV+ ++ + GL    +    L+    ++  ++ ++++   M  AGI P+V+TY   ++
Sbjct: 194 AAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLE 253

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
              KA     A   +  MR ++   + V +N +I+   +SGAV+ AF    EM    + +
Sbjct: 254 AHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVD--YGL 311

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD  T GALM      G++  A+ +   +    +K    VY   ++   + G    A  
Sbjct: 312 SPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFD 371

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           + ++M   GV P+++    LI      G++  A ++L E    G      +Y  LM    
Sbjct: 372 ILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHF 431

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
              +   A EL   M++  + P   T   +I  LC   +  +   +L +M S GL PN  
Sbjct: 432 QHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAF 491

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            Y+ L++   ++  + +    L    +  V+P+L  +  +I
Sbjct: 492 MYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLI 532



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 182/388 (46%), Gaps = 18/388 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVY------HARFFNV---CKSQKAIKEAFRF 83
           N L + G   E  +LLE+M  +GL     +Y      H++  ++   C+S + + +A   
Sbjct: 463 NGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVL 522

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P L  +N L+   ++    E A +    VQ+ GL  D   Y+ LI    K+  +
Sbjct: 523 ------PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNL 576

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +   ++  +M+N+G++PN  TY  L++G  K+    K       M     KPD  ++  +
Sbjct: 577 EKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIV 636

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    +S  ++ AF VL E+  E + + PD     +L+        +++A  +   + K 
Sbjct: 637 IRNLSRSENMEVAFMVLTEV--EKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKE 694

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            ++     Y   I+   ++GD   A +V+D +  KG++P+ V  +ALID     G +  A
Sbjct: 695 GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDA 754

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           F++ ++  ++GI+     Y+ L   CS+A + ++AL L E M + +    VS  + L+  
Sbjct: 755 FDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFN-RGYAHVSLFSTLVRG 813

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
            C   +L +T ++L  M    + PN  T
Sbjct: 814 FCKRGRLQETEKLLHVMMDREIVPNAQT 841



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 4/305 (1%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+D   K G V  A     +M    + P R   N L+    ++ A++  + +   M    
Sbjct: 181 LVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAG 240

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
            P  PD  T    ++A   A   D A++V++ + + +       Y + I+   ++G  E 
Sbjct: 241 IP--PDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEE 298

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A    ++M   G+ PD     AL++     G+++ A  +L E    G+   ++ Y++L+ 
Sbjct: 299 AFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVD 358

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                    +A ++   M S  ++P     + LI  LC   QL +  ++L++M  +G  P
Sbjct: 359 GFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRP 418

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEK-ARTLN 465
           +T TY  L+    +  D +    LL++ +  G++PN   +  +I G+C     K A  L 
Sbjct: 419 DTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLL 478

Query: 466 EHVLS 470
           E ++S
Sbjct: 479 EEMIS 483



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 89/202 (44%), Gaps = 8/202 (3%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           LH Y+ LI    +   + + + LL++M ++GL      Y+A     C+S    +    F 
Sbjct: 665 LHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFD 724

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            ++     P   T+  L+     + D   AF + + + + G+  D  +Y  L T C+ + 
Sbjct: 725 SILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAA 784

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            ++    +  EM N G   +V  +  L+ G  K G++ +      +M  + + P+     
Sbjct: 785 DLEQALFLTEEMFNRGY-AHVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVE 843

Query: 202 ALITACGQSGAVDRAFDVLAEM 223
            +IT  G++G +  A  V AE+
Sbjct: 844 NVITEFGKAGKLCEAHRVFAEL 865



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 77/181 (42%)

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           V  + ++   + G    A  V   M   G+ P     + L+     A  +E  +++    
Sbjct: 177 VLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFM 236

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           +  GI   + +YS+ + A   A+++  A +++E M+         T N +I+ LC    +
Sbjct: 237 EGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAV 296

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            +      +M   GL P+  TY  L+    +   ++    LL +    G+ PN+V++  +
Sbjct: 297 EEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATL 356

Query: 451 I 451
           +
Sbjct: 357 V 357


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 204/425 (48%), Gaps = 13/425 (3%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK----- 78
            ++ YN +I    ++G + E + +LE+M+  G+      Y       CK     K     
Sbjct: 324 NVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLI 383

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           E  ++  +   P+L +++ L       + S+ +  + R +  AG K D   Y+ LI    
Sbjct: 384 EEMKYSNM--EPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFC 441

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
             G +D+  ++  EMV   + P+   + +L+ G  K G    A   + +M    + P   
Sbjct: 442 MQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIA 501

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
             N +I A  + G V+ A +++ EM  +   + P+  T  A++       + +RA E++ 
Sbjct: 502 TCNVIIDAHCREGRVEEALNLMNEM--QTQGIFPNLFTYNAVINRLCKERKSERALELFP 559

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
           ++ K N+  +  VY+  I+  ++  + + A  +Y  M K GV PD V  + LI+   H  
Sbjct: 560 LMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRS 619

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           ++  A+ + ++    G++   ISY+S++       + +KA  L+  M      PTV T  
Sbjct: 620 RMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYT 679

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           +L+   C  +++     ++ +MK  G+ P+ +TY++L+ A  R+ +++  L +L++ KE+
Sbjct: 680 SLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKEN 739

Query: 439 GVIPN 443
           GV+P+
Sbjct: 740 GVLPD 744



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 119/554 (21%), Positives = 235/554 (42%), Gaps = 66/554 (11%)

Query: 43  ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102
           +  ++LE+MER G                                 +PT+ T++  +   
Sbjct: 273 QATEILEEMERNG--------------------------------ESPTVVTYSTYIYGL 300

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
                 E A   +R +  A    +   Y  +I    K G++D   +V  EM + GI P+V
Sbjct: 301 CRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDV 360

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
           +TY  LI G  K G V K       M+  N++P  V +++L     +    D + D+  +
Sbjct: 361 YTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRD 420

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           + A  +  D    +I  L+K     G +D A ++ + + + N+   P  +   ++   + 
Sbjct: 421 LGAAGYKYDQTAYSI--LIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKM 478

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G W  A   ++ M + G++P     + +ID     G+VE A  ++ E + QGI   + +Y
Sbjct: 479 GLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTY 538

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           ++++      +  ++ALEL+  M    + P+V   + LI          K + + + M  
Sbjct: 539 NAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLK 598

Query: 403 LGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEK 460
           +G+ P+ + Y+IL+ + C R    E    L  +  E+G+ P+ + +  +I G C      
Sbjct: 599 IGVTPDMVAYTILINILCHRSRMCE-AYNLFKKMTENGMTPDKISYTSVIAGFC------ 651

Query: 461 ARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADI 520
                           +I +   + AL  + E +  G +PTV   + ++         DI
Sbjct: 652 ----------------RIGDMRKAWAL--FNEMLQRGHLPTVVTYTSLVDGYCKMNRIDI 693

Query: 521 RERLVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP-CVSFKEIP 576
            + L++ +   G++ D +  + L +     G  D +A  +L E    G++P  +++  + 
Sbjct: 694 ADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLD-KALEMLNEMKENGVLPDHMTYMMLE 752

Query: 577 VVVDARKLEIHTAK 590
            ++ A+KL+   +K
Sbjct: 753 WLLKAKKLKTRRSK 766



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 155/356 (43%), Gaps = 35/356 (9%)

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           I    L+K  A    ++ A +V+    K  ++ +       + C ++    EF  S++++
Sbjct: 180 IVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEE 239

Query: 295 MTKKGVIPDEVFLSALIDF--AGHAGKVE----AAFEILQEAKNQGISVGIISYSSLMGA 348
           M   G  P+    + +++F   G+ G+ +     A EIL+E +  G S  +++YS+ +  
Sbjct: 240 MKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYG 299

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
                  + AL+    + S      V   NA+I  LC   +L + ++VL +MKS G+ P+
Sbjct: 300 LCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPD 359

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEH 467
             TYSIL+    ++ DVE GL L+ + K   + P+LV +  +  G+C +R          
Sbjct: 360 VYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKR---------- 409

Query: 468 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 527
                          + ++L ++R+   AG        S ++    +  + D   +L+E 
Sbjct: 410 --------------LSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEE 455

Query: 528 LGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCVSFKEIPVVVDA 581
           +  +  A   SN  SL+ GF +      A          GI+P  S     V++DA
Sbjct: 456 MVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILP--SIATCNVIIDA 509


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 197/442 (44%), Gaps = 7/442 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTL 92
           R+  + +   L E+M RKG+L       A    +CK  +   EA+  F    K+   P  
Sbjct: 256 RRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGR-FSEAYALFREMEKIGAAPNH 314

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+ ML+   A ++    +  +L  V   G+  D  +YT L+    K GK+D   ++F  
Sbjct: 315 VTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRH 374

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            ++    PN  TY  LID   KAG V  A      M  K++ P+ V F+++I    + G 
Sbjct: 375 ALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGW 434

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V +A D + EM      +DP+ +T G ++         + A +VY  +    ++    + 
Sbjct: 435 VGKATDYMREMKE--RGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIV 492

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              +N   + G  E A +++ +M ++GV+ D V  + LID     G + AAF++ QE   
Sbjct: 493 DSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTE 552

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           + +    + Y+  +         ++A    E M+S  LKP   T N +I A     +  K
Sbjct: 553 KNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAK 612

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            +++L+ MK   + PN ITYS L+V       VE    LL++    G  P  +  + ++ 
Sbjct: 613 ALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQ 672

Query: 453 MCSRRYEKARTLNEHVLSFNSG 474
            CS+       L  H    N+G
Sbjct: 673 ACSQGRRSDLILEIHEWMMNAG 694



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 125/509 (24%), Positives = 208/509 (40%), Gaps = 80/509 (15%)

Query: 35  LIRQGRISECIDLLEDMERKG----------LLD------------------------MD 60
           L + GR SE   L  +ME+ G          L+D                        MD
Sbjct: 289 LCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMD 348

Query: 61  KVYHARFFN-VCKSQKAIKEAFRFFK--LVPN--PTLSTFNMLMSVCASSKDSEGAFQVL 115
            + +    + +CK  K I EA   F+  L  N  P   T+ +L+     + + +GA QVL
Sbjct: 349 LIMYTALMDWLCKEGK-IDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVL 407

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
             ++E  +  +   ++++I    K G V    +   EM   GI+PNV TYG +IDG  K 
Sbjct: 408 SEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKC 467

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
                A   Y  M  + V+ ++ + ++L+    ++G +++A  +  EMN     V  DH+
Sbjct: 468 LGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNE--RGVLLDHV 525

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
               L+      G +  A +V + + + N+     VY + INC    G  + A S  ++M
Sbjct: 526 NYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEM 585

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL---------- 345
              G+ PD+V  + +I      GK   A ++L   K   I   +I+YS+L          
Sbjct: 586 QSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAV 645

Query: 346 -------------------------MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
                                    + ACS  +     LE++E M +  L   ++  N L
Sbjct: 646 EKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTL 705

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +  LC      K M VL +M   G+ P+TIT++ L++   +   ++       Q    G+
Sbjct: 706 VRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGI 765

Query: 441 IPNLVMFKCIIG---MCSRRYEKARTLNE 466
            PN+  F  ++G      R  E    LNE
Sbjct: 766 SPNVATFNTLLGGLESAGRIGESDMVLNE 794



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 190/424 (44%), Gaps = 9/424 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN---VCKSQKAIKEAFRFFKLVPN 89
           N L+++G + +  D + +M+ +G+ D + V +    +    C  Q+A  + +    L   
Sbjct: 427 NGLVKRGWVGKATDYMREMKERGI-DPNVVTYGTVIDGSFKCLGQEAALDVYHEM-LCEG 484

Query: 90  PTLSTF--NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             ++ F  + L++    +   E A  + R + E G+  D   YTTLI    K+G + A F
Sbjct: 485 VEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAF 544

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +V  E+    + P+   Y   I+     G+  +A      M+S  +KPD+V +N +I A 
Sbjct: 545 KVGQELTEKNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQ 604

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G   +A  +L  M      + P+ IT   L+     AG V++A+ +   +       
Sbjct: 605 SREGKTAKALKLLNGMKRS--SIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSP 662

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   +   +  CSQ    +    +++ M   G+  D    + L+    + G    A  +L
Sbjct: 663 TSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVL 722

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E   +GI+   I++++L+     + +   A   Y+ M    + P V+T N L+  L   
Sbjct: 723 EEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESA 782

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++ ++  VL++MK  G+ P+ +TY IL+    ++ +    + L  +    G +P +  +
Sbjct: 783 GRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTY 842

Query: 448 KCII 451
             +I
Sbjct: 843 NALI 846



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 176/387 (45%), Gaps = 15/387 (3%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCK 128
           ++ ++++ A    +   +    ++N++MS        +G      L+ E    G+  D  
Sbjct: 83  RALRSLRPALALLRSSESVDTVSYNVVMS----GFSEQGGLAPEALLAEMCKRGVPFDAV 138

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAFGAYG 186
              T++    + G+VD    +   MV  G    +   G  +L+DG  K G +  AF    
Sbjct: 139 TVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAE 198

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M+++ V  D V +N+L+    ++G VD A D++  M  +   V+P+ +T    +     
Sbjct: 199 RMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRD--GVEPNVVTYTMFIVEYCR 256

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDE 304
              VD A  +Y+ + +  +   P+V T++  +    + G +  A +++ +M K G  P+ 
Sbjct: 257 RNAVDDAFSLYEEMVRKGV--LPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNH 314

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V    LID    A +   +  +L E  ++G+ + +I Y++LM          +A +++ H
Sbjct: 315 VTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRH 374

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
             S    P   T   LI ALC    +    +VLS+M+   + PN +T+S ++    ++  
Sbjct: 375 ALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGW 434

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII 451
           V      + + KE G+ PN+V +  +I
Sbjct: 435 VGKATDYMREMKERGIDPNVVTYGTVI 461



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 148/349 (42%), Gaps = 5/349 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           G+  E    LE+M+  GL      Y+   A      K+ KA+K      +    P L T+
Sbjct: 573 GKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITY 632

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           + L+     +   E A  +L  +  +G       +  ++  C++  + D + E+   M+N
Sbjct: 633 STLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMN 692

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           AG+  ++  Y  L+      G   KA      M  + + PD + FNALI    +SG +D 
Sbjct: 693 AGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDN 752

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           AF    +M    H + P+  T   L+    +AG++  +  V   + K  I+ +   Y I 
Sbjct: 753 AFSTYDQM--LYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDIL 810

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           +    +  +   A  +Y +M  KG +P     +ALI      G +  A E+  E +N+G+
Sbjct: 811 VTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGV 870

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
                +Y  L+   S  +N  +  +  + MK     P+  T++++  A 
Sbjct: 871 LPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAF 919



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/423 (23%), Positives = 169/423 (39%), Gaps = 48/423 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------L 86
           N L + G+I +   L  +M  +G+L +D V +    +       +  AF+  +      L
Sbjct: 497 NGLKKNGKIEKAEALFREMNERGVL-LDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNL 555

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +P+  +  +N+ ++       S+ A   L  +Q  GLK D   Y T+I   ++ GK    
Sbjct: 556 LPDAVV--YNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKA 613

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP----------- 195
            ++ + M  + I+PN+ TY  LI G  +AG V KA      M S    P           
Sbjct: 614 LKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQA 673

Query: 196 ------------------------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
                                   D  V+N L+     +G   +A  VL EM+     + 
Sbjct: 674 CSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSG--RGIA 731

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           PD IT  AL+     +G +D A   Y  +  + I      +   +      G    +  V
Sbjct: 732 PDTITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMV 791

Query: 292 YDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
            ++M K+G+ P  +    L+  +   + KVEA   +  E   +G    + +Y++L+   S
Sbjct: 792 LNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAV-RLYCEMVGKGFLPKVSTYNALISDFS 850

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
                 +A EL+  M++  + PT  T + L++         +  + L DMK  G  P+  
Sbjct: 851 KVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKG 910

Query: 411 TYS 413
           T S
Sbjct: 911 TLS 913



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 139/293 (47%), Gaps = 8/293 (2%)

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
           A  ++RS     D V +N +++   + G +     +LAEM     P D   +T+  ++  
Sbjct: 91  ALALLRSSE-SVDTVSYNVVMSGFSEQGGLAPE-ALLAEMCKRGVPFDA--VTVNTVLVG 146

Query: 244 CANAGQVDRAREVYK-MIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
               G+VDRA  + + M+    I G   V +   ++   + GD E A +V + M  +GV 
Sbjct: 147 LCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVG 206

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
            D V  ++L+     AG+V+AA +++   K  G+   +++Y+  +           A  L
Sbjct: 207 VDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSL 266

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           YE M    + P V T++AL+  LC   +  +   +  +M+ +G  PN +TY +L+    +
Sbjct: 267 YEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAK 326

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTLNEHVLSFN 472
                  L LL +    GV+ +L+M+  ++  +C   + ++A+ +  H LS N
Sbjct: 327 AQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDN 379


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/484 (24%), Positives = 220/484 (45%), Gaps = 16/484 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFF--NVCKSQKAIKEAFRFFK-LVPNPT 91
           L+++G I E + L + M   G  +   V         +C S   + +A R F  L P+ T
Sbjct: 160 LVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLC-SDGRVSDAERVFAALGPSAT 218

Query: 92  LSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           + T+N M+   C + +  +      RL+       D   +  LI      G++     VF
Sbjct: 219 VVTYNTMVNGYCRAGRIEDAR----RLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVF 274

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M++ G  P+V TY  L+D   K     +A      MR+K  +PD V +N LI A    
Sbjct: 275 DDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNE 334

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G VD A ++L+  N   H   PD +T   ++K+   + +     E+   +   N      
Sbjct: 335 GDVDEALNILS--NLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEV 392

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            +   +    Q G  + A  V D M++ G + D V  S+++D     G+V+ A E+L   
Sbjct: 393 TFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRL 452

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K+ G     I+Y++++    + + W++A EL   M      P   T N ++ +LC    +
Sbjct: 453 KSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLV 512

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            + + V+  M   G  P+ +TY+ ++     +  ++  + LLS  +  G  P++V F  +
Sbjct: 513 DRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTL 572

Query: 451 I-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 508
           + G+C   R+E A  L  +++  N   P  E  + ++   + ++ ++   I T++++++ 
Sbjct: 573 LKGLCGVDRWEDAEQLMANMMRSNC--PPDELTFNTVITSLCQKGLLTQAIETLKIMAEN 630

Query: 509 LGCL 512
            GC+
Sbjct: 631 -GCV 633



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 179/425 (42%), Gaps = 38/425 (8%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LIR    +GRI + + + +DM  +G                               
Sbjct: 253 TFNPLIRALCVRGRIPDALAVFDDMLHRGC------------------------------ 282

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             +P++ T+++L+           A  +L  ++  G + D   Y  LI      G VD  
Sbjct: 283 --SPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEA 340

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +   + + G +P+  TY  ++     + +  +       M S N  PD V FN ++T+
Sbjct: 341 LNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTS 400

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             Q G VDRA +V+  M+   H    D +T  +++    + G+VD A E+   +  Y  K
Sbjct: 401 LCQQGLVDRAIEVVDHMSE--HGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCK 458

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                YT  +     T  WE A  +  +M      PDEV  + ++      G V+ A  +
Sbjct: 459 PDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRV 518

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +++    G S  I++Y+ ++    N      A+EL   ++S   KP + T N L+  LC 
Sbjct: 519 VEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCG 578

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
            D+     +++++M      P+ +T++ ++ +  +K  +   +  L    E+G +PN   
Sbjct: 579 VDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSST 638

Query: 447 FKCII 451
           +  ++
Sbjct: 639 YSIVV 643



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 194/449 (43%), Gaps = 13/449 (2%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI     +G + E +++L ++   G       Y     ++C S++  +      ++
Sbjct: 323 TYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEM 382

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             N   P   TFN +++        + A +V+  + E G  AD   Y++++      G+V
Sbjct: 383 TSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRV 442

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   E+   + + G +P+   Y  ++ G     Q  +A      M   +  PD V FN +
Sbjct: 443 DDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTV 502

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           + +  Q G VDRA  V+ +M+   +   PD +T   ++    N   +D A E+   +   
Sbjct: 503 VASLCQKGLVDRAIRVVEQMSE--NGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSC 560

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             K     +   +        WE A  +  +M +    PDE+  + +I      G +  A
Sbjct: 561 GCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQA 620

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E L+     G      +YS ++ A   A   Q ALEL   M +    P + T N +I+ 
Sbjct: 621 IETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGT--PDLITYNTVISN 678

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L    ++ + +++L  M S GLCP+T TY  L     R+D  +  + +L + ++ G+ P+
Sbjct: 679 LTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPD 738

Query: 444 LVMFK-CIIGMC-SRRYEKARTLNEHVLS 470
              +   ++G C  RR + A     H++S
Sbjct: 739 TTFYNDVLLGFCRDRRTDLAIDCFAHMVS 767



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 162/391 (41%), Gaps = 15/391 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRFFKLVPNPT 91
           L +QG +   I++++ M   G +     Y +    +C   +   A++   R       P 
Sbjct: 401 LCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPD 460

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
              +  ++    S++  E A +++  +  +    D   + T++ +  + G VD    V  
Sbjct: 461 TIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVE 520

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQS 210
           +M   G  P++ TY  +IDG      +  A      ++S   KPD V FN L+   CG  
Sbjct: 521 QMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCG-- 578

Query: 211 GAVDRAFD---VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
             VDR  D   ++A M     P  PD +T   ++ +    G + +A E  K++ +     
Sbjct: 579 --VDRWEDAEQLMANMMRSNCP--PDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVP 634

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y+I ++   + G  + A  +   MT     PD +  + +I     AGK+E A ++L
Sbjct: 635 NSSTYSIVVDALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTKAGKMEEALDLL 692

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +   + G+     +Y SL           +A+ +   ++   L P  +  N ++   C  
Sbjct: 693 RVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRD 752

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            +    ++  + M S G  P+  TY ILL A
Sbjct: 753 RRTDLAIDCFAHMVSSGCMPDESTYVILLEA 783



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 159/373 (42%), Gaps = 13/373 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           GR+ + ++LL  ++  G       Y      +C +++  +      +++ +   P   TF
Sbjct: 440 GRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTF 499

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N +++        + A +V+  + E G   D   Y  +I        +D   E+  ++ +
Sbjct: 500 NTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQS 559

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G +P++ T+  L+ G     +   A      M   N  PD + FN +IT+  Q G + +
Sbjct: 560 CGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQ 619

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YT 273
           A + L  M AE   V P+  T   ++ A   AG+   A E+   +      GTP++  Y 
Sbjct: 620 AIETLKIM-AENGCV-PNSSTYSIVVDALLKAGKAQAALELLSGM----TNGTPDLITYN 673

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+  ++ G  E A  +   M   G+ PD     +L          + A  +L+  ++ 
Sbjct: 674 TVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDT 733

Query: 334 GISVGIISYSS-LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           G+S     Y+  L+G C + +    A++ + HM S    P  ST   L+ AL  G  L +
Sbjct: 734 GLSPDTTFYNDVLLGFCRDRRT-DLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDE 792

Query: 393 TMEVLSDMKSLGL 405
              +L+ + SLG+
Sbjct: 793 AKRLLASLCSLGV 805


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 210/463 (45%), Gaps = 37/463 (7%)

Query: 15  NGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           +G + N  +  S  + +Y R    G   E I +   M+  GL      Y+A      K  
Sbjct: 261 SGGYGNTVYAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGG 317

Query: 75  KAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
              K+  +FF  +      P   TFN L++VC+     E A  +   +    ++ D   Y
Sbjct: 318 MEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSY 377

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            TL+    K G++D  FE+  +M    I PNV +Y  +IDG AKAG+  +A   +G MR 
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
            N+  DRV +N L++   + G  + A D+L EM A V  +  D +T  AL+      G+ 
Sbjct: 438 LNIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVG-IKKDVVTYNALLGGYGKQGKY 495

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D  ++V+  + + ++      Y+  I+  S+ G ++ A  V+ +    G+  D V  SAL
Sbjct: 496 DEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSAL 555

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID     G V +A  ++ E   +GIS  +++Y+S++ A   +   +++ + Y +  S+  
Sbjct: 556 IDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSAD-YSNGGSLPF 614

Query: 371 KPT--------------------VSTMNALITALC-DGDQ-LPKTMEVLSDMKSLGLCPN 408
             +                     S  N  +T  C +G Q L   +EV   M  L + PN
Sbjct: 615 SSSALSELTETEGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMHQLEIKPN 674

Query: 409 TITYSILLVACERKDDVEVGLMLLSQ-----AKEDGVIPNLVM 446
            +T+S +L AC R +  E   MLL +      K  GV+  L+M
Sbjct: 675 VVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 164/338 (48%), Gaps = 9/338 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAY 185
           ++ LI+   +SG  +    VF+ M   G+ PN+ TY A+ID C K G    QVAK F   
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE- 329

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M+   V+PDR+ FN+L+  C + G  + A ++  EM+     ++ D  +   L+ A  
Sbjct: 330 --MQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSN--RRIEQDVFSYNTLLDAIC 385

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
             GQ+D A E+   +    I      Y+  I+  ++ G ++ A +++ +M    +  D V
Sbjct: 386 KGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRV 445

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + L+      G+ E A +IL+E  + GI   +++Y++L+G       + +  +++  M
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEM 505

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           K   + P + T + LI     G    + MEV  + KS GL  + + YS L+ A  +   V
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLV 565

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 463
              + L+ +  ++G+ PN+V +  II    R     R+
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERS 603



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 192/442 (43%), Gaps = 61/442 (13%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEV 149
           T+  F+ L+S    S   E A  V   ++E GL+ +   Y  +I  C K G +   + + 
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM    ++P+  T+ +L+  C++ G    A   +  M ++ ++ D   +N L+ A  +
Sbjct: 327 FDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICK 386

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D AF++LA+M A+   + P+ ++   ++   A AG+ D A  ++  +   NI    
Sbjct: 387 GGQMDLAFEILAQMPAK--RIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDR 444

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   ++  ++ G  E A  +  +M   G+  D V  +AL+   G  GK +   ++  E
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAE 504

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K + +   +++YS+L+   S    +++A+E++   KS  L+  V   +ALI ALC    
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGL 564

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVA------CERKDDVEVG--------------- 428
           +   + ++ +M   G+ PN +TY+ ++ A       ER  D   G               
Sbjct: 565 VGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSADYSNGGSLPFSSSALSELTE 624

Query: 429 ------LMLLSQAKEDG-----------------------------VIPNLVMFKCIIGM 453
                 + L  Q   +G                             + PN+V F  I+  
Sbjct: 625 TEGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNA 684

Query: 454 CSR--RYEKARTLNEHVLSFNS 473
           CSR   +E A  L E +  F++
Sbjct: 685 CSRCNSFEDASMLLEELRLFDN 706



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 156/326 (47%), Gaps = 5/326 (1%)

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
           KL + +I+T  + GKV     +F    + G    V+ + ALI    ++G   +A   +  
Sbjct: 234 KLASAMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNS 293

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGALMKACA 245
           M+   ++P+ V +NA+I ACG+ G     F  +A+   E+    V PD IT  +L+  C+
Sbjct: 294 MKEYGLRPNLVTYNAVIDACGKGGM---EFKQVAKFFDEMQRNCVQPDRITFNSLLAVCS 350

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
             G  + AR ++  +    I+     Y   ++   + G  + A  +   M  K ++P+ V
Sbjct: 351 RGGLWEAARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVV 410

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             S +ID    AG+ + A  +  E +   I++  +SY++L+   +     ++AL++   M
Sbjct: 411 SYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREM 470

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
            S+ +K  V T NAL+       +  +  +V ++MK   + PN +TYS L+    +    
Sbjct: 471 ASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLY 530

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  + +  + K  G+  ++V++  +I
Sbjct: 531 KEAMEVFREFKSAGLRADVVLYSALI 556


>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
 gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
          Length = 630

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 145/327 (44%), Gaps = 39/327 (11%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   YT  I+ C  S  VD   E+ +EM    IE NVHT+ AL++ C K G++  A   Y
Sbjct: 67  DVYSYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIY 126

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKAC 244
             MR+ N  P+ V +N L+   G+ G  +RA  VL  M  E V PV              
Sbjct: 127 NNMRAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPV-------------- 172

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
                          +  YN         IA N C+Q  +   A +VY  +   G  P+ 
Sbjct: 173 ---------------LRTYN------TLIIACNMCNQPRE---ALAVYQRLLSDGYTPNS 208

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
              +ALI   G   ++  A E+ QE   Q +   +I+YSSL+ AC  A  W+ AL ++  
Sbjct: 209 TTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNE 268

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M+     P   T N+L+TA   G Q  K  EV   M + G  P+ +TY+ L+ A ER   
Sbjct: 269 MQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQ 328

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +  L    +    G  P+ +++  II
Sbjct: 329 WQKALQAFGKMCMQGCKPDAIVYNAII 355



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 147/293 (50%), Gaps = 2/293 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++   +S+C  S+D + A +++  +++  ++ +   +T L+  C K GK+    E+++ M
Sbjct: 70  SYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNM 129

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
             A   PNV TY  L+D   K G+  +A     +M+ + V+P    +N LI AC      
Sbjct: 130 RAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQP 189

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A  V   + ++ +   P+  T  AL+ A     Q+ +A EVY+ + + N++ +   Y+
Sbjct: 190 REALAVYQRLLSDGYT--PNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYS 247

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+ C + G WE A  ++++M +   +P+ V  ++L+      G+ E A E+ ++    
Sbjct: 248 SLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAH 307

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           G +  +++Y++L+ A      WQKAL+ +  M     KP     NA+I  L +
Sbjct: 308 GCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAIIDTLWE 360



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 130/256 (50%), Gaps = 5/256 (1%)

Query: 217 FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           FD L   N E  P+    D  +  A +  C  +  VDRA E+   + + NI+     +T 
Sbjct: 50  FDWLRSAN-ERSPLRQLCDVYSYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTA 108

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            +N C + G    A  +Y++M     +P+ V  + L+D  G  G+ E A  +L   K +G
Sbjct: 109 LMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEG 168

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +   + +Y++L+ AC+     ++AL +Y+ + S    P  +T NALI+A     QL K +
Sbjct: 169 VEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKAL 228

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           EV  +M    +  + ITYS L+ ACE+    E  L + ++ ++D  +PN V +  ++  C
Sbjct: 229 EVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTAC 288

Query: 455 SR--RYEKARTLNEHV 468
           ++  ++EKA  + E +
Sbjct: 289 AQGGQWEKATEVFEQM 304



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 142/303 (46%), Gaps = 14/303 (4%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           +   ++L+ +M ++ +      + A   NVC     +  A   +  +      P + T+N
Sbjct: 84  VDRAMELMNEMRQRNIERNVHTFTA-LMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYN 142

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
            L+ V       E A  VL L+++ G++   + Y TLI  C    +      V+  +++ 
Sbjct: 143 TLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSD 202

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G  PN  TY ALI    K  Q+ KA   Y  M  +N++   + +++LI+AC ++G  + A
Sbjct: 203 GYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETA 262

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTI 274
             +  EM  +     P+ +T  +L+ ACA  GQ ++A EV++ +  +    TP+V  YT 
Sbjct: 263 LRIFNEMQQD--NCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGC--TPDVVTYTA 318

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA---AFEILQEAK 331
            I+   + G W+ A   +  M  +G  PD +  +A+ID     G + A   A ++   A 
Sbjct: 319 LISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAIIDTLWETGIIWAQGRALQLFLTAV 378

Query: 332 NQG 334
            QG
Sbjct: 379 QQG 381



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 135/302 (44%), Gaps = 10/302 (3%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKP------DRVVFNALITACGQSGAVDRAFDVLA 221
           L+   ++ G+  +A   +  +RS N +       D   + A I+ C  S  VDRA +++ 
Sbjct: 33  LLKDLSRLGKDRRAMELFDWLRSANERSPLRQLCDVYSYTATISLCIYSQDVDRAMELMN 92

Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
           EM      ++ +  T  ALM  C   G++  A E+Y  +   N       Y   ++   +
Sbjct: 93  EMRQ--RNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLVDVYGK 150

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
            G WE A  V D M ++GV P     + LI       +   A  + Q   + G +    +
Sbjct: 151 LGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTT 210

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           Y++L+ A        KALE+Y+ M    ++ +V T ++LI+A     Q    + + ++M+
Sbjct: 211 YNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQ 270

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYE 459
                PNT+TY+ L+ AC +    E    +  Q    G  P++V +  +I    R  +++
Sbjct: 271 QDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQWQ 330

Query: 460 KA 461
           KA
Sbjct: 331 KA 332



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 15/220 (6%)

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           +A I    ++  V+ A E++ E + + I   + ++++LM  C        ALE+Y +M++
Sbjct: 72  TATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRA 131

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
               P V T N L+       +  + + VL  MK  G+ P   TY+ L++AC   +    
Sbjct: 132 ANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPRE 191

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHVLSFNSGRPQIE------ 479
            L +  +   DG  PN   +  +I    +  +  KA  + + +L  N  R  I       
Sbjct: 192 ALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLIS 251

Query: 480 -----NKWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQ 513
                 +W + AL ++ E      +P TV   S V  C Q
Sbjct: 252 ACEKAGQWET-ALRIFNEMQQDNCVPNTVTYNSLVTACAQ 290


>gi|298714808|emb|CBJ25707.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1273

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 175/371 (47%), Gaps = 6/371 (1%)

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             P +  FN  M+ CA + + E A +VL  +Q  GL A+   Y   +   AK+G  +   E
Sbjct: 642  GPDVVCFNYAMTACAKAGECELAHRVLSRIQACGLAANLVSYGICMDAYAKAGLWEKALE 701

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            +  E  + G+ PN+ T+   + G A      KA     +M+S+ +KP+ V +  LI+ CG
Sbjct: 702  LLAEARSQGLSPNIVTFTTAVRGLA-CNDWDKAEEILSMMKSRAIKPNEVTYTELISICG 760

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
            +SG V +A   L    A  + + P+ I   A +  CA  G+VDRA  + + +        
Sbjct: 761  RSGDVHQALAQLE--RARRNGLSPNLINYNACVDVCAKTGEVDRALALLEQMQTSGDPAL 818

Query: 268  TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            TP++ T    IN C++ GDW     ++ ++   G+  D    +A +D        EAA  
Sbjct: 819  TPDLVTFNSVINACAKAGDWALTLWLFSEIKAAGLKADIQSFNAALDACTKGSNPEAALA 878

Query: 326  ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            +L+  K+QG+    ISY S + AC    +   A+ L   M+   L+P  +  N +I  + 
Sbjct: 879  LLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRDMEQQGLEPRDADYNLVIETVG 938

Query: 386  DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
                    +E+L  MK+ G+  +  TY   + AC +  + ++   LL + K+ G+ P   
Sbjct: 939  REGDWAGALELLKSMKAEGIAADAYTYGAAVGACAKGRNPDLARALLEEMKDLGLTPTRF 998

Query: 446  MFKCIIGMCSR 456
             +  II + SR
Sbjct: 999  CWNSIISVHSR 1009



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 127/527 (24%), Positives = 226/527 (42%), Gaps = 39/527 (7%)

Query: 60   DKVYHARFFNVCKSQKAIKEAF----RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL 115
            ++V +    ++C     + +A     R  +   +P L  +N  + VCA + + + A  +L
Sbjct: 748  NEVTYTELISICGRSGDVHQALAQLERARRNGLSPNLINYNACVDVCAKTGEVDRALALL 807

Query: 116  RLVQEAG---LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
              +Q +G   L  D   + ++I  CAK+G       +F E+  AG++ ++ ++ A +D C
Sbjct: 808  EQMQTSGDPALTPDLVTFNSVINACAKAGDWALTLWLFSEIKAAGLKADIQSFNAALDAC 867

Query: 173  AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVD 231
             K      A      M+S+ ++PD + + + I AC   G    A  +L +M  + + P D
Sbjct: 868  TKGSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRDMEQQGLEPRD 927

Query: 232  PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
             D+  +   ++     G    A E+ K +    I      Y  A+  C++  + + A ++
Sbjct: 928  ADYNLV---IETVGREGDWAGALELLKSMKAEGIAADAYTYGAAVGACAKGRNPDLARAL 984

Query: 292  YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
             ++M   G+ P     +++I      G   AA  ++ E K Q +     ++S++M  C+ 
Sbjct: 985  LEEMKDLGLTPTRFCWNSIISVHSRTGNTTAAMTLMDEMK-QSMPCDETTFSAMMHGCAQ 1043

Query: 352  AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
             ++W  A  L E M +  LKP  +    L+ A C   +L     ++  M+  G  P+  +
Sbjct: 1044 TRDWDAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLIKGMRKDGAAPDLYS 1103

Query: 412  YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLS 470
            Y+ L  AC R  D  + L L+   K DG+     ++   +  C R   E A  L E + S
Sbjct: 1104 YTTLSAACGRFHDWRMALRLIESMKIDGIPATKKIYAAALAACGRGEAEIAEILLEMMRS 1163

Query: 471  FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER-LVENLG 529
                  ++++   S AL+ +      G  P   +V             DIRE+    NL 
Sbjct: 1164 QGV---ELDDVGRSHALVAFGR----GGRPDKALV----------LMDDIREKGPPPNLQ 1206

Query: 530  VSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP-CVSFKEI 575
                A++   L   IDG         SLL E    GIVP  VSF+ +
Sbjct: 1207 CFNGAIEACALADDIDG-------GISLLAEMGRAGIVPNGVSFRSL 1246



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/507 (22%), Positives = 202/507 (39%), Gaps = 84/507 (16%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            +Y  LI    R G + + +  LE   R GL      Y+A   +VC     +  A    + 
Sbjct: 751  TYTELISICGRSGDVHQALAQLERARRNGLSPNLINYNA-CVDVCAKTGEVDRALALLEQ 809

Query: 87   VPN-------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            +         P L TFN +++ CA + D      +   ++ AGLKAD + +   +  C K
Sbjct: 810  MQTSGDPALTPDLVTFNSVINACAKAGDWALTLWLFSEIKAAGLKADIQSFNAALDACTK 869

Query: 140  SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
                +A   +   M + G+EP+  +Y + I  C   G  A A      M  + ++P    
Sbjct: 870  GSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRDMEQQGLEPRDAD 929

Query: 200  FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
            +N +I   G+ G    A ++L  M AE   +  D  T GA + ACA     D AR + + 
Sbjct: 930  YNLVIETVGREGDWAGALELLKSMKAE--GIAADAYTYGAAVGACAKGRNPDLARALLEE 987

Query: 260  IHKYNIKGT----------------------------------PEVYTIAINCCSQTGDW 285
            +    +  T                                     ++  ++ C+QT DW
Sbjct: 988  MKDLGLTPTRFCWNSIISVHSRTGNTTAAMTLMDEMKQSMPCDETTFSAMMHGCAQTRDW 1047

Query: 286  EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
            + A  + ++M   G+ P++     L+  A  AG++  A  +++  +  G +  + SY++L
Sbjct: 1048 DAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLIKGMRKDGAAPDLYSYTTL 1107

Query: 346  MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD------------------- 386
              AC    +W+ AL L E MK I   P    + A   A C                    
Sbjct: 1108 SAACGRFHDWRMALRLIESMK-IDGIPATKKIYAAALAACGRGEAEIAEILLEMMRSQGV 1166

Query: 387  ----------------GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
                            G +  K + ++ D++  G  PN   ++  + AC   DD++ G+ 
Sbjct: 1167 ELDDVGRSHALVAFGRGGRPDKALVLMDDIREKGPPPNLQCFNGAIEACALADDIDGGIS 1226

Query: 431  LLSQAKEDGVIPNLVMFKCIIGMCSRR 457
            LL++    G++PN V F+ ++  C R+
Sbjct: 1227 LLAEMGRAGIVPNGVSFRSLVSACERK 1253



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 180/408 (44%), Gaps = 40/408 (9%)

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            +P + TF   +   A + D + A ++L +++   +K +   YT LI+ C +SG V     
Sbjct: 712  SPNIVTFTTAVRGLACN-DWDKAEEILSMMKSRAIKPNEVTYTELISICGRSGDVHQALA 770

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN---VKPDRVVFNALIT 205
                    G+ PN+  Y A +D CAK G+V +A      M++     + PD V FN++I 
Sbjct: 771  QLERARRNGLSPNLINYNACVDVCAKTGEVDRALALLEQMQTSGDPALTPDLVTFNSVIN 830

Query: 206  ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
            AC ++G       + +E+ A    +  D  +  A + AC      + A  + K +    +
Sbjct: 831  ACAKAGDWALTLWLFSEIKA--AGLKADIQSFNAALDACTKGSNPEAALALLKRMKSQGL 888

Query: 266  KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            +     Y  AI  C   GD   A  +  DM ++G+ P +   + +I+  G  G    A E
Sbjct: 889  EPDAISYQSAILACRAGGDGASAVMLLRDMEQQGLEPRDADYNLVIETVGREGDWAGALE 948

Query: 326  ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT--- 382
            +L+  K +GI+    +Y + +GAC+  +N   A  L E MK + L PT    N++I+   
Sbjct: 949  LLKSMKAEGIAADAYTYGAAVGACAKGRNPDLARALLEEMKDLGLTPTRFCWNSIISVHS 1008

Query: 383  -------ALCDGDQLPKTM------------------------EVLSDMKSLGLCPNTIT 411
                   A+   D++ ++M                         +L +M + GL PN   
Sbjct: 1009 RTGNTTAAMTLMDEMKQSMPCDETTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDAC 1068

Query: 412  YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
            Y  LLVA  R  ++ +   L+   ++DG  P+L  +  +   C R ++
Sbjct: 1069 YYTLLVAACRAGELRLAEGLIKGMRKDGAAPDLYSYTTLSAACGRFHD 1116



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/444 (22%), Positives = 196/444 (44%), Gaps = 23/444 (5%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK----------EAFRFFKLVP 88
           G   + ++LLE+ + KG+   +  Y        K+   +K          E      L P
Sbjct: 509 GEPGKALELLEEAKSKGVKPTEVTYATAIGACAKATTNVKANARKAVLLLEEMEAAGLEP 568

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P        ++V A+S+    A  +L  ++E G +     Y+  + + A+ G       
Sbjct: 569 YP--PAHQAALTVLAASEGHRAAMDLLAKMRENGTRLTSASYSPALKSAAQVGDWRNAIA 626

Query: 149 VFHEMVNAGIE-----PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +   M  A +      P+V  +   +  CAKAG+   A      +++  +  + V +   
Sbjct: 627 LIDVMTRASVTDKDAGPDVVCFNYAMTACAKAGECELAHRVLSRIQACGLAANLVSYGIC 686

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           + A  ++G  ++A ++LAE  A    + P+ +T    ++  A     D+A E+  M+   
Sbjct: 687 MDAYAKAGLWEKALELLAE--ARSQGLSPNIVTFTTAVRGLA-CNDWDKAEEILSMMKSR 743

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            IK     YT  I+ C ++GD   A +  +   + G+ P+ +  +A +D     G+V+ A
Sbjct: 744 AIKPNEVTYTELISICGRSGDVHQALAQLERARRNGLSPNLINYNACVDVCAKTGEVDRA 803

Query: 324 FEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             +L++ +  G   ++  +++++S++ AC+ A +W   L L+  +K+  LK  + + NA 
Sbjct: 804 LALLEQMQTSGDPALTPDLVTFNSVINACAKAGDWALTLWLFSEIKAAGLKADIQSFNAA 863

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           + A   G      + +L  MKS GL P+ I+Y   ++AC    D    +MLL   ++ G+
Sbjct: 864 LDACTKGSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRDMEQQGL 923

Query: 441 IPNLVMFKCIIGMCSRRYEKARTL 464
            P    +  +I    R  + A  L
Sbjct: 924 EPRDADYNLVIETVGREGDWAGAL 947



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 169/382 (44%), Gaps = 11/382 (2%)

Query: 47   LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVC 102
            LL+ M+ +GL + D + +      C++      A    + +      P  + +N+++   
Sbjct: 879  LLKRMKSQGL-EPDAISYQSAILACRAGGDGASAVMLLRDMEQQGLEPRDADYNLVIETV 937

Query: 103  ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
                D  GA ++L+ ++  G+ AD   Y   +  CAK    D    +  EM + G+ P  
Sbjct: 938  GREGDWAGALELLKSMKAEGIAADAYTYGAAVGACAKGRNPDLARALLEEMKDLGLTPTR 997

Query: 163  HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
              + ++I   ++ G    A      M+ +++  D   F+A++  C Q+   D A  +L E
Sbjct: 998  FCWNSIISVHSRTGNTTAAMTLMDEMK-QSMPCDETTFSAMMHGCAQTRDWDAAGRLLEE 1056

Query: 223  MNAE-VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
            MNA  + P D  + T+  L+ AC  AG++  A  + K + K         YT     C +
Sbjct: 1057 MNAAGLKPNDACYYTL--LVAAC-RAGELRLAEGLIKGMRKDGAAPDLYSYTTLSAACGR 1113

Query: 282  TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
              DW  A  + + M   G+   +   +A +   G  G+ E A  +L+  ++QG+ +  + 
Sbjct: 1114 FHDWRMALRLIESMKIDGIPATKKIYAAALAACGR-GEAEIAEILLEMMRSQGVELDDVG 1172

Query: 342  YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
             S  + A        KAL L + ++     P +   N  I A    D +   + +L++M 
Sbjct: 1173 RSHALVAFGRGGRPDKALVLMDDIREKGPPPNLQCFNGAIEACALADDIDGGISLLAEMG 1232

Query: 402  SLGLCPNTITYSILLVACERKD 423
              G+ PN +++  L+ ACERKD
Sbjct: 1233 RAGIVPNGVSFRSLVSACERKD 1254



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 151/350 (43%), Gaps = 15/350 (4%)

Query: 32   YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAFR 82
            YN +I    R+G  +  ++LL+ M+ +G+      Y A      K +     +A+ E  +
Sbjct: 930  YNLVIETVGREGDWAGALELLKSMKAEGIAADAYTYGAAVGACAKGRNPDLARALLEEMK 989

Query: 83   FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
               L P  T   +N ++SV + + ++  A  ++  ++++ +  D   ++ ++  CA++  
Sbjct: 990  DLGLTP--TRFCWNSIISVHSRTGNTTAAMTLMDEMKQS-MPCDETTFSAMMHGCAQTRD 1046

Query: 143  VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
             DA   +  EM  AG++PN   Y  L+    +AG++  A G    MR     PD   +  
Sbjct: 1047 WDAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLIKGMRKDGAAPDLYSYTT 1106

Query: 203  LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
            L  ACG+      A  ++  M  +  P         A + AC   G+ + A  + +M+  
Sbjct: 1107 LSAACGRFHDWRMALRLIESMKIDGIPATKK--IYAAALAACGR-GEAEIAEILLEMMRS 1163

Query: 263  YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              ++      + A+    + G  + A  + DD+ +KG  P+    +  I+    A  ++ 
Sbjct: 1164 QGVELDDVGRSHALVAFGRGGRPDKALVLMDDIREKGPPPNLQCFNGAIEACALADDIDG 1223

Query: 323  AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               +L E    GI    +S+ SL+ AC          +L E M  + LKP
Sbjct: 1224 GISLLAEMGRAGIVPNGVSFRSLVSACERKDKPDLKKDLREAMSRLGLKP 1273



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 82/391 (20%), Positives = 163/391 (41%), Gaps = 25/391 (6%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-GK-VD 144
           +P+    ++N L+S  A   D++     +  +   G  AD   Y+       KS G+   
Sbjct: 277 LPDLDRLSYNWLVSAHAQLGDAKAVLATIEDMGRNGHPADADTYSLAFKAFVKSRGRHWG 336

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV---VFN 201
           A  +VF  M ++  E      G    GC   G+     G   +  S  V  + +   V+ 
Sbjct: 337 AALDVFRAMQSSSAETTPRRVG----GCVVEGE---GVGVAEVEASAEVSSELLSTDVWC 389

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGALMKACANA-GQVDRAREVYK 258
             +T   Q     +       +  E     V+ D  T  A++ A   A G+ ++   +++
Sbjct: 390 KTVTTVAQGSPPRKTLSAALSLMEEAQQAGVEVDAATTDAVLTALGKAKGKDEKLLALFR 449

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
              +  ++   + Y  A+    + G  + A       +++G++   V  +A +  A   G
Sbjct: 450 QAEERGLRLKRQSYAWAVVAYKRCGKAKEALDSALSFSERGIVMPVVGWNAAMHAASVTG 509

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NWQKALELYEHMKSIKLKPT 373
           +   A E+L+EAK++G+    ++Y++ +GAC+ A      N +KA+ L E M++  L+P 
Sbjct: 510 EPGKALELLEEAKSKGVKPTEVTYATAIGACAKATTNVKANARKAVLLLEEMEAAGLEPY 569

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE-----VG 428
                A +T L   +     M++L+ M+  G    + +YS  L +  +  D       + 
Sbjct: 570 PPAHQAALTVLAASEGHRAAMDLLAKMRENGTRLTSASYSPALKSAAQVGDWRNAIALID 629

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           +M  +   +    P++V F   +  C++  E
Sbjct: 630 VMTRASVTDKDAGPDVVCFNYAMTACAKAGE 660



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 151/363 (41%), Gaps = 30/363 (8%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  E+  AG+ P   TY  +I  C K+G++ +A      M SK  KP + V N ++  C 
Sbjct: 122 LMSEVEEAGMVPGEDTYSGVIRDCCKSGRIEEATRMLDAMISKGYKPPQGVVNTVLDTCT 181

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM-IHKYNI-- 265
                 +   VL  M A+   +D D  T    MKACA A    +   V+++ + K  +  
Sbjct: 182 TRKNTRKVTKVLLAMRAQ--GLDVDDATYRKAMKACAMANDPTQVVGVWELFVGKGRVVT 239

Query: 266 -KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHA--GKV 320
                EV  +A       GDW+    +    +    G +PD   LS     + HA  G  
Sbjct: 240 DVAAAEVSRVA-RAMGSLGDWKGIIGLLGTKSTAGGGALPDLDRLSYNWLVSAHAQLGDA 298

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGAC--SNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +A    +++    G      +YS    A   S  ++W  AL+++  M+S   + T   + 
Sbjct: 299 KAVLATIEDMGRNGHPADADTYSLAFKAFVKSRGRHWGAALDVFRAMQSSSAETTPRRVG 358

Query: 379 ALITALCDGD-----QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
             +    +G+     ++  + EV S++ S  +   T+T ++   +  RK  +   L L+ 
Sbjct: 359 GCVV---EGEGVGVAEVEASAEVSSELLSTDVWCKTVT-TVAQGSPPRK-TLSAALSLME 413

Query: 434 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREA 493
           +A++ GV  +      ++        KA+  +E +L+      Q E +   L    Y  A
Sbjct: 414 EAQQAGVEVDAATTDAVLTALG----KAKGKDEKLLALFR---QAEERGLRLKRQSYAWA 466

Query: 494 IVA 496
           +VA
Sbjct: 467 VVA 469



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 95/491 (19%), Positives = 176/491 (35%), Gaps = 88/491 (17%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G  +E I+ LE  ER G          R      + +   EA      V      P   T
Sbjct: 79  GEWTEAIEQLEK-ERGGGQTPSLGAFERAIQALGAGRKWAEAVGLMSEVEEAGMVPGEDT 137

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           ++ ++  C  S   E A ++L  +   G K    +  T++ TC        + +V   M 
Sbjct: 138 YSGVIRDCCKSGRIEEATRMLDAMISKGYKPPQGVVNTVLDTCTTRKNTRKVTKVLLAMR 197

Query: 155 NAGIEPNVHTYGALIDGCAKA----------------------------GQVAKAFGAY- 185
             G++ +  TY   +  CA A                             +VA+A G+  
Sbjct: 198 AQGLDVDDATYRKAMKACAMANDPTQVVGVWELFVGKGRVVTDVAAAEVSRVARAMGSLG 257

Query: 186 ------GIMRSKNVKP-------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
                 G++ +K+          DR+ +N L++A  Q G        + +M    HP D 
Sbjct: 258 DWKGIIGLLGTKSTAGGGALPDLDRLSYNWLVSAHAQLGDAKAVLATIEDMGRNGHPADA 317

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP----------------------- 269
           D  ++       +       A +V++ +   + + TP                       
Sbjct: 318 DTYSLAFKAFVKSRGRHWGAALDVFRAMQSSSAETTPRRVGGCVVEGEGVGVAEVEASAE 377

Query: 270 ---EVYTIAINCCSQTG---------DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
              E+ +  + C + T              A S+ ++  + GV  D     A++   G A
Sbjct: 378 VSSELLSTDVWCKTVTTVAQGSPPRKTLSAALSLMEEAQQAGVEVDAATTDAVLTALGKA 437

Query: 318 -GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            GK E    + ++A+ +G+ +   SY+  + A       ++AL+         +   V  
Sbjct: 438 KGKDEKLLALFRQAEERGLRLKRQSYAWAVVAYKRCGKAKEALDSALSFSERGIVMPVVG 497

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-----KDDVEVGLML 431
            NA + A     +  K +E+L + KS G+ P  +TY+  + AC +     K +    ++L
Sbjct: 498 WNAAMHAASVTGEPGKALELLEEAKSKGVKPTEVTYATAIGACAKATTNVKANARKAVLL 557

Query: 432 LSQAKEDGVIP 442
           L + +  G+ P
Sbjct: 558 LEEMEAAGLEP 568


>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
          Length = 1420

 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 196/427 (45%), Gaps = 54/427 (12%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P   +FN ++  CA  K  + AF++  L++   LK +   Y +LI  C +  ++++ +++
Sbjct: 582  PDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQL 641

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQ----------VAKAFGAYGIMRSKN--VKPDR 197
              EM    I P+  TY  LI G     Q          + KAF     M+  N  VKPD 
Sbjct: 642  LSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDE 701

Query: 198  VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
            +++N LI AC +   V+RA  V  EM  +   + P  +T G L+KA  +A Q+D A  V+
Sbjct: 702  ILYNCLIDACVRFHDVNRAVAVFQEM--QFSNIKPSSVTYGILIKAYGSANQLDNAFFVF 759

Query: 258  KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            K +    +      Y   I+ C +    E A  V++ M + GV  + +  + LI     +
Sbjct: 760  KKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKS 819

Query: 318  GKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--IKLKPTV 374
             K++ A E+ Q  K +  I    ++++SL+  C    + +KA+E++E MK      KP +
Sbjct: 820  FKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDL 879

Query: 375  STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM---- 430
             T + +I   C    + + + +L+DM+   +  + + Y+ LL  C + +++E+ L     
Sbjct: 880  ITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKN 939

Query: 431  -------------------------------LLSQAKEDGVIPNLVMFKCIIGMC--SRR 457
                                           +L + K+DG+ P L+++ C++  C  SR+
Sbjct: 940  MEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRPGLIVYTCLLQTCIKSRQ 999

Query: 458  YEKARTL 464
             + A  L
Sbjct: 1000 LKTAEQL 1006



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 191/438 (43%), Gaps = 56/438 (12%)

Query: 71   CKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
            C  +K ++ AF  F L+      P   T+N L+  C        A+Q+L  +Q+  +  D
Sbjct: 594  CAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQLLSEMQQNNIVPD 653

Query: 127  CKLYTTLIT-----TCAKSGKVDAM-----FEVFHEM--VNAGIEPNVHTYGALIDGCAK 174
               Y+TLI        +++G  + M     F +  +M   N G++P+   Y  LID C +
Sbjct: 654  NFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDEILYNCLIDACVR 713

Query: 175  AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
               V +A   +  M+  N+KP  V +  LI A G +  +D AF V  +M      + P+ 
Sbjct: 714  FHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNC--LIPNS 771

Query: 235  ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
            +T G L+ AC    Q++RA EV++ + +  ++    ++T  I   +++   + A  VY  
Sbjct: 772  VTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQI 831

Query: 295  MTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKN--------------------- 332
            M     I P+ V  ++LID       ++ A EI +E K                      
Sbjct: 832  MKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLITYSTMIKGFCR 891

Query: 333  ----------------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
                              I    + Y+SL+  C  A   + AL++Y++M+ +K+KP+  T
Sbjct: 892  EKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILKIKPSNVT 951

Query: 377  MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
             + LI        LPK + VL +MK  G+ P  I Y+ LL  C +   ++    L    +
Sbjct: 952  YSILIKIYGKQRNLPKALGVLEEMKKDGIRPGLIVYTCLLQTCIKSRQLKTAEQLFHDMR 1011

Query: 437  EDGVIPNLVMFKCIIGMC 454
              G+  + + ++ +I  C
Sbjct: 1012 IQGIRGDQLTYQTMINGC 1029



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 210/462 (45%), Gaps = 60/462 (12%)

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFN-MLMSVCASSKDSEGAFQVLR 116
           +D +  A  F   ++++   + F   K  PN   + TF+ M+   C + +  + A  VL 
Sbjct: 334 LDSLLKAELFE--EAEQIYNKVFTLSKDQPNCMDMMTFSCMIKGYCRAQRLPQ-ALNVLS 390

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           +++E G+K D  LY ++I  C+K+ ++   F ++ EM+  G+ P   T+ +LID C ++G
Sbjct: 391 IMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSG 450

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNAL---ITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
              +A+     M+ K VKPD   ++ L   I +  Q   +++AF VL       +   PD
Sbjct: 451 NQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAF-VLYNQLQNSNDFTPD 509

Query: 234 HITIGALMKACANAGQVDRAREVYKMI-----------------HKYNIKGTPE------ 270
            I    L+ AC N  Q+DRA E++K +                 +  +++ +P+      
Sbjct: 510 EILFNVLLDACINCKQLDRAVELFKQLKPQSQPQIQVSNTDDADNSLSLEDSPDSAKNAP 569

Query: 271 ----------------VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
                            +   I  C+Q    + A  +++ M  + + P++V  ++LID  
Sbjct: 570 AVVNSSNHHFMRPDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDAC 629

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLM----------GACSNAKNWQKALELYEH 364
               ++ +A+++L E +   I     +YS+L+             SN  + +KA  L E 
Sbjct: 630 VRCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQ 689

Query: 365 MKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           MK     +KP     N LI A      + + + V  +M+   + P+++TY IL+ A    
Sbjct: 690 MKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSA 749

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
           + ++    +  + K++ +IPN V + C+I  C +  +  R +
Sbjct: 750 NQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAM 791



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 193/431 (44%), Gaps = 22/431 (5%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNV---CKSQKAI------ 77
            +YN LI    R  R++    LL +M++  ++  +  Y      +    +SQ  I      
Sbjct: 621  TYNSLIDACVRCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDL 680

Query: 78   KEAFRFFKLVPN------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            ++AF   + +        P    +N L+  C    D   A  V + +Q + +K     Y 
Sbjct: 681  EKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYG 740

Query: 132  TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
             LI     + ++D  F VF +M +  + PN  TYG LID C K  Q+ +A   +  M+  
Sbjct: 741  ILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRD 800

Query: 192  NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
             V+ + ++F  LI    +S  +D+A +V   M  +   + P+++T  +L+  C     + 
Sbjct: 801  GVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMD-DKIKPNNVTFNSLIDCCIRCNSIK 859

Query: 252  RAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
            +A E+++ + +      P++  Y+  I    +  + + A  + +DM K  ++ DEV  ++
Sbjct: 860  KAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNS 919

Query: 310  LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
            L+D    A ++E A ++ +  +   I    ++YS L+      +N  KAL + E MK   
Sbjct: 920  LLDGCCKANEIEMALKVYKNMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDG 979

Query: 370  LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
            ++P +     L+       QL    ++  DM+  G+  + +TY  ++  C      +  L
Sbjct: 980  IRPGLIVYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQTMINGCLYSQKFDSIL 1039

Query: 430  MLLSQAKEDGV 440
            +LL  A +  V
Sbjct: 1040 ILLKDASDSKV 1050



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 89/214 (41%), Gaps = 34/214 (15%)

Query: 326 ILQEAKNQGISVGIISYSSL---MGACSNAKNWQKALELYEHMKSI---KLKPTV-STMN 378
           ++QEA +       ++ S+L   +   S     Q AL+ +  ++     +  PT   T+N
Sbjct: 272 LVQEAVHNAKRTDFLASSTLKIFVKYYSRLNQTQTALQYFHQLQQTSQAQNDPTYYQTVN 331

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGL----CPNTITYSILLVACERKDDVEVGLMLLSQ 434
            ++ +L   +   +  ++ + + +L      C + +T+S ++    R   +   L +LS 
Sbjct: 332 QMLDSLLKAELFEEAEQIYNKVFTLSKDQPNCMDMMTFSCMIKGYCRAQRLPQALNVLSI 391

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAI 494
            KE G+ P+ V++  II  CS+  + A+                       A ++Y E +
Sbjct: 392 MKERGIKPDEVLYNSIIDGCSKNNQIAK-----------------------AFLLYDEML 428

Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
             G  PT    + ++ C     N D   R++E +
Sbjct: 429 GEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQM 462


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 212/450 (47%), Gaps = 14/450 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      GR  E   LL  M R+ +   D  ++     +CK  + I EA     +
Sbjct: 232 TYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGR-ILEAQGVLAM 290

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N LM    S ++   A ++   + + GL+ D   Y  LI    K+  
Sbjct: 291 MSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKM 350

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD    +F E+ N  + P + +Y +LIDG   +G+++        M      PD V +N 
Sbjct: 351 VDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNI 410

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI A  + G +  A  VL  M  +   V P+ +T  A+M        V+ A++++  + K
Sbjct: 411 LIDALCKEGRILEALGVLVMMMKK--GVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVK 468

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             ++     Y + IN   +T   + A  ++ +M  K +IPD    ++LID   + G++  
Sbjct: 469 SGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPH 528

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
             E+L E  + G S  +I+Y+ L+ A    + + KA+ L+  +    + P   T +A++ 
Sbjct: 529 VQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVD 587

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC G++L    + L  +   G  PN  TY+IL+ A  +       ++LLS+ +++   P
Sbjct: 588 NLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPP 647

Query: 443 NLVMFKCIIGMCSRRYE--KARTLNEHVLS 470
           + + F+ IIG+  +R E  KA  L E +++
Sbjct: 648 DAITFEIIIGVLLQRNETDKAEKLREEMIA 677



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 112/501 (22%), Positives = 234/501 (46%), Gaps = 31/501 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P+++TF +L++       +  AF +L  + ++G + +   + T+I     +G +    +
Sbjct: 87  SPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALD 146

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
               ++  G   +  TYG LI+G +K GQ+  A      M   +V+P+ V+++ALI    
Sbjct: 147 FCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLC 206

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V  A  + +++      +  D +T  +L+  C + G+     ++   + + N+   
Sbjct: 207 KDGFVSDALGLCSQIGER--GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPD 264

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              + I I+   + G    A  V   M+K+G  PD V  +AL++       V  A E+  
Sbjct: 265 DYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFN 324

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G+   +++Y+ L+      K   +A+ L++ + +  L PT+++ N+LI  LC+  
Sbjct: 325 RMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSG 384

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++    ++L +M      P+ +TY+IL+ A  ++  +   L +L    + GV PN+V + 
Sbjct: 385 RISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYN 444

Query: 449 CII-GMCSR-----------RYEKARTLNEHVLSFN---SGRPQIENKWTSLALMVYREA 493
            ++ G C R           R  K+  L   +L++N   +G  + E      A+++++E 
Sbjct: 445 AMMDGYCLRNNVNVAKDIFNRMVKS-GLEPDILNYNVLINGYCKTE--MVDEAIVLFKEM 501

Query: 494 IVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 549
                IP +   + ++  L    ++P+  ++ + + ++ G S D +  +    L+D F +
Sbjct: 502 RHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDS-GQSPDVITYN---ILLDAFCK 557

Query: 550 YDP--RAFSLLEEAASFGIVP 568
             P  +A SL  +    GI P
Sbjct: 558 TQPFDKAISLFRQIVE-GIWP 577



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 113/278 (40%), Gaps = 8/278 (2%)

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           VD A      M   V P  P  +    L+ A    G    A  ++  +    I  +   +
Sbjct: 36  VDDAVTCFNRM-VRVFPPPPTSV-FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATF 93

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           TI INC        FA S+   + K G  P+ V  + +I+     G +  A +  Q    
Sbjct: 94  TILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLA 153

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           QG      +Y +L+   S     + AL L + M+   ++P +   +ALI  LC    +  
Sbjct: 154 QGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSD 213

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
            + + S +   G+  + +TY+ L+  C      +    LL++   + V P+   F  +I 
Sbjct: 214 ALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILID 273

Query: 452 GMCSRRYEKARTLN-EHVLSFNSGRPQIENKWTSLALM 488
            +C    ++ R L  + VL+  S R +  +  T  ALM
Sbjct: 274 ALC----KEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 181/359 (50%), Gaps = 8/359 (2%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           D+ GA +++R +     K + ++Y T+I    K   V   + +F EM   GI  +V TY 
Sbjct: 179 DTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYT 238

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI G   A ++ +A G    M  K + P+   +N L+ A  + G V  A +VLA M   
Sbjct: 239 TLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKA 298

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGD 284
              V PD IT   LM       ++ +A+ V+  +    +  TP+V  YTI IN   +   
Sbjct: 299 C--VKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGV--TPDVHSYTILINGFCKNKM 354

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            + A +++ +M +K ++P  V  S+LID    +G++   ++++ E +++GI   +I+Y+S
Sbjct: 355 VDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNS 414

Query: 345 LM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           L+ G C N  +  +A+ L+  MK   ++P   T   L+  LC G +L    E   D+ + 
Sbjct: 415 LIDGLCKNG-HLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTK 473

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
           G   +   Y++++    ++  +E  L +LS+ +E+G +PN V F  II    ++ E  +
Sbjct: 474 GYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDK 532



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 178/435 (40%), Gaps = 39/435 (8%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD     F+ M+     P +  +  ++D  AK    + A      +  K ++PD +  N 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI      G +   F VLA++    +   P  IT   L+K     GQV++A   +  +  
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGY--QPHTITFTTLIKGLCLKGQVNKALHFHDKLLA 157

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             IK     Y   IN   + GD   A  +   +  +   P+    + +ID       V  
Sbjct: 158 QGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSE 217

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A+ +  E   +GIS  +++Y++L+     A   ++A+ L   M    + P V T N L+ 
Sbjct: 218 AYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVD 277

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           ALC   ++ +   VL+ M    + P+ ITYS L+       +++    + +     GV P
Sbjct: 278 ALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTP 337

Query: 443 NLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 501
           ++  +  +I G C                        +NK    AL +++E      +P 
Sbjct: 338 DVHSYTILINGFC------------------------KNKMVDEALNLFKEMHQKNMVPG 373

Query: 502 VEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRA 554
           +   S ++  L    ++ Y  D+ + +  + G+ A+ +  +   SLIDG    G  D RA
Sbjct: 374 IVTYSSLIDGLCKSGRISYVWDLIDEM-RDRGIPANVITYN---SLIDGLCKNGHLD-RA 428

Query: 555 FSLLEEAASFGIVPC 569
            +L  +    GI PC
Sbjct: 429 IALFNKMKDQGIRPC 443



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 153/343 (44%), Gaps = 13/343 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I    +   +SE   L  +M  KG+      Y    +  C + K +KEA      +
Sbjct: 202 YNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASK-LKEAIGLLNEM 260

Query: 88  P----NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                NP + T+N+L+ ++C   K  E A  VL ++ +A +K D   Y+TL+       +
Sbjct: 261 VLKTINPNVYTYNILVDALCKEGKVKE-AKNVLAVMLKACVKPDVITYSTLMDGYFLVYE 319

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +     VF+ M   G+ P+VH+Y  LI+G  K   V +A   +  M  KN+ P  V +++
Sbjct: 320 LKKAQHVFNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSS 379

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    +SG +   +D++ EM     P +   IT  +L+      G +DRA  ++  +  
Sbjct: 380 LIDGLCKSGRISYVWDLIDEMRDRGIPANV--ITYNSLIDGLCKNGHLDRAIALFNKMKD 437

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I+     +TI ++   + G  + A   + D+  KG   D    + +I+     G +E 
Sbjct: 438 QGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEE 497

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           A  +L + +  G     +++  ++ A        KA +L   M
Sbjct: 498 ALTMLSKMEENGCVPNAVTFDIIINALFKKDENDKAEKLLRQM 540



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 11/208 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  +HSY  LI    +   + E ++L ++M +K ++     Y +    +CKS + I   
Sbjct: 335 VTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGR-ISYV 393

Query: 81  FRFF-----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           +        + +P   + T+N L+     +   + A  +   +++ G++     +T L+ 
Sbjct: 394 WDLIDEMRDRGIPANVI-TYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLD 452

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K G++    E F +++  G   +V+ Y  +I+G  K G + +A      M      P
Sbjct: 453 GLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVP 512

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEM 223
           + V F+ +I A  +    D+A  +L +M
Sbjct: 513 NAVTFDIIINALFKKDENDKAEKLLRQM 540


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 212/450 (47%), Gaps = 14/450 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      GR  E   LL  M R+ +   D  ++     +CK  + I EA     +
Sbjct: 232 TYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGR-ILEAQGVLAM 290

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N LM    S ++   A ++   + + GL+ D   Y  LI    K+  
Sbjct: 291 MSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKM 350

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD    +F E+ N  + P + +Y +LIDG   +G+++        M      PD V +N 
Sbjct: 351 VDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNI 410

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI A  + G +  A  VL  M  +   V P+ +T  A+M        V+ A++++  + K
Sbjct: 411 LIDALCKEGRILEALGVLVMMMKK--GVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVK 468

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             ++     Y + IN   +T   + A  ++ +M  K +IPD    ++LID   + G++  
Sbjct: 469 SGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPH 528

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
             E+L E  + G S  +I+Y+ L+ A    + + KA+ L+  +    + P   T +A++ 
Sbjct: 529 VQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVD 587

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC G++L    + L  +   G  PN  TY+IL+ A  +       ++LLS+ +++   P
Sbjct: 588 NLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPP 647

Query: 443 NLVMFKCIIGMCSRRYE--KARTLNEHVLS 470
           + + F+ IIG+  +R E  KA  L E +++
Sbjct: 648 DAITFEIIIGVLLQRNETDKAEKLREEMIA 677



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 112/501 (22%), Positives = 234/501 (46%), Gaps = 31/501 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P+++TF +L++       +  AF +L  + ++G + +   + T+I     +G +    +
Sbjct: 87  SPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALD 146

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
               ++  G   +  TYG LI+G +K GQ+  A      M   +V+P+ V+++ALI    
Sbjct: 147 FCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLC 206

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V  A  + +++      +  D +T  +L+  C + G+     ++   + + N+   
Sbjct: 207 KDGFVSDALGLCSQIGER--GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPD 264

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              + I I+   + G    A  V   M+K+G  PD V  +AL++       V  A E+  
Sbjct: 265 DYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFN 324

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G+   +++Y+ L+      K   +A+ L++ + +  L PT+++ N+LI  LC+  
Sbjct: 325 RMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSG 384

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++    ++L +M      P+ +TY+IL+ A  ++  +   L +L    + GV PN+V + 
Sbjct: 385 RISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYN 444

Query: 449 CII-GMCSR-----------RYEKARTLNEHVLSFN---SGRPQIENKWTSLALMVYREA 493
            ++ G C R           R  K+  L   +L++N   +G  + E      A+++++E 
Sbjct: 445 AMMDGYCLRNNVNVAKDIFNRMVKS-GLEPDILNYNVLINGYCKTE--MVDEAIVLFKEM 501

Query: 494 IVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 549
                IP +   + ++  L    ++P+  ++ + + ++ G S D +  +    L+D F +
Sbjct: 502 RHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDS-GQSPDVITYN---ILLDAFCK 557

Query: 550 YDP--RAFSLLEEAASFGIVP 568
             P  +A SL  +    GI P
Sbjct: 558 TQPFDKAISLFRQIVE-GIWP 577



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 113/278 (40%), Gaps = 8/278 (2%)

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           VD A      M   V P  P  +    L+ A    G    A  ++  +    I  +   +
Sbjct: 36  VDDAVTCFNRM-VRVFPPPPTSV-FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATF 93

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           TI INC        FA S+   + K G  P+ V  + +I+     G +  A +  Q    
Sbjct: 94  TILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLA 153

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           QG      +Y +L+   S     + AL L + M+   ++P +   +ALI  LC    +  
Sbjct: 154 QGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSD 213

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
            + + S +   G+  + +TY+ L+  C      +    LL++   + V P+   F  +I 
Sbjct: 214 ALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILID 273

Query: 452 GMCSRRYEKARTLN-EHVLSFNSGRPQIENKWTSLALM 488
            +C    ++ R L  + VL+  S R +  +  T  ALM
Sbjct: 274 ALC----KEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 75/179 (41%), Gaps = 3/179 (1%)

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
           NC  +  D    C  ++ M +    P       L+      G    A  +  + +++GIS
Sbjct: 30  NCRFRNVDDAVTC--FNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGIS 87

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             I +++ L+    +  +   A  L   +     +P + T N +I   C    + K ++ 
Sbjct: 88  PSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDF 147

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
             ++ + G   +  TY  L+    +   ++  L LL + ++  V PNLVM+  +I G+C
Sbjct: 148 CQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLC 206


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 211/449 (46%), Gaps = 14/449 (3%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDM--ERKGLLDMDKVYHAR----FFNVCKSQKAI 77
            + SYN L++    + R  E ++LL  M  +R G    D V +      FF    S KA 
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+N +++    ++  + A +VL  + + G+  DC  Y +++   
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
             SG+         +M + G+EP+V TY  L+D   K G+  +A   +  M  + +KP+ 
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             +  L+      GA+     +L  M    + + PDH     L+ A A  G+VD+A  V+
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHYVFSILICAYAKQGKVDQAMLVF 394

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             + +  +      Y   I    ++G  E A   ++ M  +G+ P  +  ++LI      
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 454

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            K E A E++ E  ++GI +  I ++S++ +        ++ +L+E M  I +KP V T 
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N LI   C   ++ + M++LS M S+GL PNT+TYS L+    +   +E  L+L  + + 
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574

Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTL 464
            GV P+++ +  I+ G+  +RR   A+ L
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKEL 603



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 192/425 (45%), Gaps = 12/425 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFF--- 84
           LH Y      G+  E I  L+ M   G+ + D V ++   + +CK+ + + EA + F   
Sbjct: 273 LHGY---CSSGQPKEAIGFLKKMRSDGV-EPDVVTYSLLMDYLCKNGRCM-EARKIFDSM 327

Query: 85  -KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K    P ++T+  L+   A+         +L L+   G+  D  +++ LI   AK GKV
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKV 387

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D    VF +M   G+ PN  TYGA+I    K+G+V  A   +  M  + + P  +V+N+L
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I         +RA +++ EM      +  + I   +++ +    G+V  + ++++++ + 
Sbjct: 448 IHGLCTCNKWERAEELILEMLD--RGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRI 505

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            +K     Y   IN     G  + A  +   M   G+ P+ V  S LI+      ++E A
Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             + +E ++ G+S  II+Y+ ++      +    A ELY  +     +  +ST N ++  
Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC        +++  ++  + L     T++I++ A  +    +    L      +G++PN
Sbjct: 626 LCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685

Query: 444 LVMFK 448
              ++
Sbjct: 686 YWTYR 690



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 163/386 (42%), Gaps = 43/386 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM---RSKNVKPDRVVFNALIT 205
           V   M   G  PNV +Y  L+ G     +  +A     +M   R     PD V +  +I 
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G  D+A+    EM      + PD +T  +++ A   A  +D+A EV         
Sbjct: 205 GFFKEGDSDKAYSTYHEMLD--RGILPDVVTYNSIIAALCKAQAMDKAMEVL-------- 254

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                                      + M K GV+PD +  ++++     +G+ + A  
Sbjct: 255 ---------------------------NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 287

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            L++ ++ G+   +++YS LM          +A ++++ M    LKP ++T   L+    
Sbjct: 288 FLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYA 347

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L +   +L  M   G+ P+   +SIL+ A  ++  V+  +++ S+ ++ G+ PN V
Sbjct: 348 TKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAV 407

Query: 446 MFKCIIGMC--SRRYEKARTLNEHVL 469
            +  +IG+   S R E A    E ++
Sbjct: 408 TYGAVIGILCKSGRVEDAMLYFEQMI 433



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 155/335 (46%), Gaps = 13/335 (3%)

Query: 150 FHEMVNAG---IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           ++ M  AG   + P++ TYG LI  C +AG++   F A G +  K  + D + F  L+  
Sbjct: 72  YNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 131

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                    A D++     E+  + P+  +   L+K   +  +   A E+  M+      
Sbjct: 132 LCADKRTSDAMDIVLRRMTELGCI-PNVFSYNILLKGLCDENRSQEALELLHMMADDRGG 190

Query: 267 GTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G+P     YT  IN   + GD + A S Y +M  +G++PD V  +++I     A  ++ A
Sbjct: 191 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKA 250

Query: 324 FEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
            E+L      G+    ++Y+S++ G CS+ +  ++A+   + M+S  ++P V T + L+ 
Sbjct: 251 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQP-KEAIGFLKKMRSDGVEPDVVTYSLLMD 309

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC   +  +  ++   M   GL P   TY  LL     K  +     LL     +G+ P
Sbjct: 310 YLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHP 369

Query: 443 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477
           +  +F  +I  C+  Y K   +++ +L F+  R Q
Sbjct: 370 DHYVFSILI--CA--YAKQGKVDQAMLVFSKMRQQ 400


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 184/413 (44%), Gaps = 41/413 (9%)

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           KEA + +K + +    P++ T++ LM      +D+     +L  ++  GL+ +   YT  
Sbjct: 209 KEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTIC 268

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA------------ 181
           I    ++G++D  + +   M + G  P+V TY  LID    AG++ KA            
Sbjct: 269 IRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSH 328

Query: 182 -------------FGAYGI----------MRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
                        FG YG           M +    PD V +  L+ A  +SG VD+AFD
Sbjct: 329 KPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFD 388

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           +L  M   V  + P+  T   L+    N  ++D A E++  +    +  T   Y + I+ 
Sbjct: 389 MLDVM--RVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDY 446

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             + GD E A   ++ M K+G++P     +A +      G++  A +I  +  N G+S  
Sbjct: 447 YGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPD 506

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
            ++Y+ +M   S A    KA +L   M S   +P +  +N+LI  L    ++ +  ++  
Sbjct: 507 SVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFG 566

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +K L L P  +TY+IL+    ++  +   L L    KE G  PN V F  ++
Sbjct: 567 RLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALL 619



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 196/426 (46%), Gaps = 9/426 (2%)

Query: 35   LIRQGRISECIDL-LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPNPTL 92
            +++ GR+ + I + +E + + GL   ++V+          +  I+EA  F + LV N   
Sbjct: 691  VVKDGRVEDAIKIVMEFVHQSGLQTSNQVW-GELMECILIEAEIEEAISFAEGLVCNSIC 749

Query: 93   STFNMLMSV----CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
               N+++ +    C   K  +      +  +  G     + Y  L+         +A  +
Sbjct: 750  QDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALK 809

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            +F EM NAG  PN+ TY  L+D   K+ ++ + F  Y  M  +  KP+ +  N +I+A  
Sbjct: 810  LFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALV 869

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +S ++++A D+  E+ +      P   T G L+     AG+ + A ++++ +  Y  K  
Sbjct: 870  KSNSINKALDLYYEIIS--GDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPN 927

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +Y I IN   + G+   AC ++  M K+G+ PD    + L++     G+V+ A    +
Sbjct: 928  CAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFE 987

Query: 329  EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            E K  G+    +SY+ ++     ++  ++AL L+  MK+  + P + T NALI    +  
Sbjct: 988  ELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAG 1047

Query: 389  QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
             + +  ++  +++ +GL PN  TY+ L+    +  + +    +  +    G  PN   F 
Sbjct: 1048 MVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFA 1107

Query: 449  CIIGMC 454
             +   C
Sbjct: 1108 QLPNKC 1113



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 118/506 (23%), Positives = 203/506 (40%), Gaps = 78/506 (15%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERK--------------GLLDMDKVYHA- 65
           YA DV         L + G++ +  D+L+ M  +              GLL++ ++  A 
Sbjct: 363 YAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEAL 422

Query: 66  RFFNVCKSQKAIKEAFRFFKLV--------PNPTLSTFNML--------MSVCASSKDS- 108
             FN  +S      A+ +   +        P   L TF  +        ++ C +S  S 
Sbjct: 423 ELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSL 482

Query: 109 ------EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
                   A  +   +   GL  D   Y  ++   +K+G++D   ++  EM++ G EP++
Sbjct: 483 AEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDI 542

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
               +LID   KAG+V +A+  +G ++   + P  V +N LIT  G+ G + +A D+   
Sbjct: 543 IVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGS 602

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M     P  P+ +T  AL+        VD A +++  +   N       Y   I    + 
Sbjct: 603 MKESGCP--PNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKE 660

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIIS 341
           G   +A   Y  M KK + PD V L  L+      G+VE A +I+ E  +Q G+      
Sbjct: 661 GRAGYAFWFYHQM-KKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQV 719

Query: 342 YSSLM-----------------GACSNA------------------KNWQKALELYEHM- 365
           +  LM                 G   N+                  K    A +L++   
Sbjct: 720 WGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFT 779

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           KS+   PT  + N L+  L   +     +++  +MK+ G CPN  TY++LL A  +   +
Sbjct: 780 KSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRI 839

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII 451
           +    L ++    G  PN++    II
Sbjct: 840 DELFELYNEMLCRGCKPNIITHNIII 865



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 126/576 (21%), Positives = 217/576 (37%), Gaps = 68/576 (11%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPT 91
            L   GRI E  D+  D+   GL      Y+       K+    KA K           P 
Sbjct: 482  LAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPD 541

Query: 92   LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
            +   N L+     +   + A+Q+   +++  L      Y  LIT   K GK+    ++F 
Sbjct: 542  IIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFG 601

Query: 152  EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
             M  +G  PN  T+ AL+D   K   V  A   +  M   N  PD + +N +I    + G
Sbjct: 602  SMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEG 661

Query: 212  AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVYKMIHKYNIKGTPE 270
                AF    +M      + PDH+T+  L+      G+V+ A + V + +H+  ++ + +
Sbjct: 662  RAGYAFWFYHQMKKF---LSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQ 718

Query: 271  VYTIAINCCSQTGDWEFACS-----------------------------------VYDDM 295
            V+   + C     + E A S                                   ++D  
Sbjct: 719  VWGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKF 778

Query: 296  TKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
            TK  G  P     + L+D        EAA ++  E KN G    I +Y+ L+ A   +K 
Sbjct: 779  TKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKR 838

Query: 355  WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
              +  ELY  M     KP + T N +I+AL   + + K +++  ++ S    P   TY  
Sbjct: 839  IDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGP 898

Query: 415  LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
            L+    +    E  + +  +  +    PN  ++  +I      + KA  +N         
Sbjct: 899  LIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILI----NGFGKAGNVN--------- 945

Query: 475  RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 534
                      +A  +++  I  G  P ++  + ++ CL +    D      E L ++   
Sbjct: 946  ----------IACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLD 995

Query: 535  LKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 568
                +   +I+G G+      A SL  E  + GI P
Sbjct: 996  PDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISP 1031



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/455 (21%), Positives = 188/455 (41%), Gaps = 77/455 (16%)

Query: 72  KSQKAIKEAFRFFKLV---PN--PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           KS      A  +FK+V   PN   T  T N ++         E    V  L+Q+  +  +
Sbjct: 97  KSISDPNSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRN 156

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y T+    +  G +        +M  AG   N ++Y  LI    + G   +A   Y 
Sbjct: 157 PNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYK 216

Query: 187 IMRSKNVKPDRVVFNALITA-----------------------------------CGQSG 211
            M S+ +KP    ++AL+ A                                    G++G
Sbjct: 217 RMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAG 276

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +D A+ +L  M  E     PD +T   L+ A   AG++D+A+E+Y  +   + K     
Sbjct: 277 RIDDAYGILKTMEDE--GCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVT 334

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   ++     GD E     + +M   G  PD V  + L++    +GKV+ AF++L   +
Sbjct: 335 YITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMR 394

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT------------------ 373
            +GI   + +Y++L+    N +   +ALEL+ +M+S+ + PT                  
Sbjct: 395 VRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPE 454

Query: 374 -----------------VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
                            ++  NA + +L +  ++ +  ++ +D+ + GL P+++TY++++
Sbjct: 455 KALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMM 514

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               +   ++    LL++   +G  P++++   +I
Sbjct: 515 KCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLI 549



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 144/331 (43%), Gaps = 6/331 (1%)

Query: 137  CAKSGKVDA--MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            C +   +DA  +F+ F +  + G  P   +Y  L+DG         A   +  M++    
Sbjct: 763  CKQKKALDAKKLFDKFTK--SLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCC 820

Query: 195  PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
            P+   +N L+ A G+S  +D  F++  EM        P+ IT   ++ A   +  +++A 
Sbjct: 821  PNIFTYNLLLDAHGKSKRIDELFELYNEM--LCRGCKPNIITHNIIISALVKSNSINKAL 878

Query: 255  EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            ++Y  I   +   TP  Y   I    + G  E A  ++++M      P+    + LI+  
Sbjct: 879  DLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGF 938

Query: 315  GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
            G AG V  A ++ +    +GI   + SY+ L+           A+  +E +K   L P  
Sbjct: 939  GKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDT 998

Query: 375  STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
             + N +I  L    +L + + + S+MK+ G+ P   TY+ L++       V+    +  +
Sbjct: 999  VSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEE 1058

Query: 435  AKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
             +  G+ PN+  +  +I   S+   K R  +
Sbjct: 1059 LQFMGLEPNVFTYNALIRGHSKSGNKDRAFS 1089



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 181/445 (40%), Gaps = 57/445 (12%)

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+V+ M  VF  M    I  N +TY  +    +  G + +A  A G MR      +   +
Sbjct: 136 GRVEDMAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSY 195

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N LI    Q G    A  V   M +E   + P   T  ALM A      + R R+   ++
Sbjct: 196 NGLIYFLLQPGFCKEALKVYKRMISE--GLKPSMKTYSALMVA------LGRRRDTGTIM 247

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                                         + ++M   G+ P+    +  I   G AG++
Sbjct: 248 -----------------------------DLLEEMETLGLRPNIYTYTICIRVLGRAGRI 278

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A+ IL+  +++G    +++Y+ L+ A   A    KA ELY  M++   KP + T   L
Sbjct: 279 DDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITL 338

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           ++   +   L       S+M++ G  P+ +TY+IL+ A  +   V+    +L   +  G+
Sbjct: 339 MSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGI 398

Query: 441 IPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIE-----NKWTSL-----ALM 488
           +PNL  +  +I G+ + RR ++A  L  ++ S              + +  L     AL 
Sbjct: 399 VPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALD 458

Query: 489 VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE-----RLVENLGVSADALKRSNLCSL 543
            + +    G +P++   +  L    L     IRE       + N G+S D++  + +   
Sbjct: 459 TFEKMKKRGIMPSIAACNASL--YSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKC 516

Query: 544 IDGFGEYDPRAFSLLEEAASFGIVP 568
               G+ D +A  LL E  S G  P
Sbjct: 517 YSKAGQID-KATKLLTEMLSEGCEP 540


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 173/345 (50%), Gaps = 2/345 (0%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           ++  A  +L+ V    ++ +  +Y T+I +  K   V+  F++F EMV+ GI P+V TY 
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYS 264

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           ALI G    G++  A   +  M  +N+KPD   FN L+ A  + G +     V   M  +
Sbjct: 265 ALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ 324

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              + P+ +T  +LM       +V++A+ ++  + +  +    + Y+I IN   +   ++
Sbjct: 325 --GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD 382

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A +++ +M +K +IPD V  S+LID    +G++  A +++ +  ++G+   I +Y+S++
Sbjct: 383 EAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSIL 442

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A        KA+ L    K    +P +ST + LI  LC   +L    +V  D+   G  
Sbjct: 443 DALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYN 502

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +   Y+I++     +      L LLS+ +++G IP+   ++ II
Sbjct: 503 LDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIII 547



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 218/457 (47%), Gaps = 25/457 (5%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           H+N  +DV + +  +NRL+R+       +  + +   G L   K YH   +    SQK  
Sbjct: 61  HSN--NDVDDAVSLFNRLLRRNTTPPAFEFNKIL---GSLVKSKHYHTVLY---LSQKM- 111

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              FR  K    P L   N+L++          AF V   + + G   D   +TTL    
Sbjct: 112 --EFRGIK----PNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGL 165

Query: 138 AKSGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
              G++   F +FH+ V A G   +  +YG LI G  K G+   A      +    V+P+
Sbjct: 166 CLKGQIQQAF-LFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V++N +I +  +   V+ AFD+ +EM ++   + PD +T  AL+      G++  A ++
Sbjct: 225 VVMYNTIIDSMCKVKLVNEAFDLFSEMVSK--GISPDVVTYSALISGFCILGKLKDAIDL 282

Query: 257 YKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           +  +   NIK  P+VYT  I +N   + G  +   +V+D M K+G+ P+ V  ++L+D  
Sbjct: 283 FNKMILENIK--PDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY 340

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               +V  A  I       G++  I SYS ++      K + +A+ L++ M    + P V
Sbjct: 341 CLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDV 400

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T ++LI  L    ++   ++++  M   G+ PN  TY+ +L A  +   V+  + LL++
Sbjct: 401 VTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTK 460

Query: 435 AKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 469
            K+ G  P++  +  +I G+C S + E AR + E +L
Sbjct: 461 FKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLL 497



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 94/216 (43%), Gaps = 11/216 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  + SY+ +I    +  +  E ++L ++M RK ++  D V ++   +       I  A
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIP-DVVTYSSLIDGLSKSGRISYA 419

Query: 81  FRFF-----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            +       + VP P + T+N ++     +   + A  +L   ++ G + D   Y+ LI 
Sbjct: 420 LQLVDQMHDRGVP-PNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIK 478

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              +SGK++   +VF +++  G   +V+ Y  +I G    G   +A      M      P
Sbjct: 479 GLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIP 538

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
           D   +  +I +  +    D A  +L EM A   P++
Sbjct: 539 DAKTYEIIILSLFKKDENDMAEKLLREMIARGLPLN 574


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 163/328 (49%), Gaps = 3/328 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIM 188
           ++ +I+   +SG  +   ++F+ M + G++PN+ TY A+ID C K G +  +    +  M
Sbjct: 115 FSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEM 174

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               ++PDR+ FN+L+  C + G  + A  +  EM      +D D  T   L+ A    G
Sbjct: 175 LRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVN--RGIDQDIFTYNTLLDAVCKGG 232

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           Q+D A E+   +   NI      Y+  I+  ++ G  + A +++++M   G+  D V  +
Sbjct: 233 QLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYN 292

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            L+      G+ E A ++ +E +N GI   +++Y++L+G       +    +++E MK+ 
Sbjct: 293 TLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKAR 352

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            + P + T + LI     G    + M+V  + K  GL  + + YS L+ A  +   VE  
Sbjct: 353 HVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESA 412

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           + LL +  ++G+ PN+V +  II    R
Sbjct: 413 VSLLDEMTKEGIRPNVVTYNSIIDAFGR 440



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 206/482 (42%), Gaps = 36/482 (7%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           + N  +  S  + +Y R    G  +E I +   M+  GL      Y+A      K     
Sbjct: 108 YGNTVYAFSAIISAYGR---SGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEF 164

Query: 78  KEAFRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           K     F +++ N   P   TFN L++VC+     E A  +   +   G+  D   Y TL
Sbjct: 165 KRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTL 224

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    K G++D  FE+  EM    I PNV TY  +IDG AKAG++  A   +  M+   +
Sbjct: 225 LDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGI 284

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
             DRV +N L++   + G  + A DV  EM  E   +  D +T  AL+       + D  
Sbjct: 285 SLDRVSYNTLLSIYAKLGRFEEAMDVCREM--ENSGIRKDVVTYNALLGGYGKQYKYDVV 342

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           R+V++ +   ++      Y+  I+  S+ G +  A  V+ +  K G+  D V  SALID 
Sbjct: 343 RKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDA 402

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL-------ELY---- 362
               G VE+A  +L E   +GI   +++Y+S++ A       +  +       EL     
Sbjct: 403 LCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTSELQIDSL 462

Query: 363 ----------------EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                           E  + IK+   ++   A       G ++   + V   M  L + 
Sbjct: 463 SSSAVEKATKSLVADREDNRIIKIFGQLAAEKAGQAKNSGGQEMMCILGVFHKMHELEIK 522

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 466
           PN +T+S +L AC R +  E   MLL + +        V    ++G     +E+A++L +
Sbjct: 523 PNVVTFSAILNACSRCNSFEEASMLLEELRLFDNQVYGVAHGLLMGYRENVWEQAQSLFD 582

Query: 467 HV 468
            V
Sbjct: 583 EV 584



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 136/301 (45%), Gaps = 14/301 (4%)

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
           + + R +       + +A+I+  G+ G V+ A  V      E +          A++ A 
Sbjct: 65  FAVKRERKKNEQGKLASAMISTLGRLGKVEMAKTVFKAALTEGYG--NTVYAFSAIISAY 122

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPD 303
             +G  + A +++  +  Y +K     Y   I+ C + G +++    ++D+M + G+ PD
Sbjct: 123 GRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPD 182

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            +  ++L+      G  EAA  +  E  N+GI   I +Y++L+ A         A E+  
Sbjct: 183 RITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMS 242

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M +  + P V T + +I       +L     + ++MK LG+  + ++Y+ LL    +  
Sbjct: 243 EMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLG 302

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE-----------KARTLNEHVLSFN 472
             E  + +  + +  G+  ++V +  ++G   ++Y+           KAR ++ ++L+++
Sbjct: 303 RFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYS 362

Query: 473 S 473
           +
Sbjct: 363 T 363



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 157/375 (41%), Gaps = 29/375 (7%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++   + +Y+ +I    + GR+ +  +L  +M+  G+  +D+V +    ++       
Sbjct: 246 AKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGI-SLDRVSYNTLLSIYAKLGRF 304

Query: 78  KEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +EA    + + N  +     T+N L+         +   +V   ++   +  +   Y+TL
Sbjct: 305 EEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTL 364

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I   +K G      +VF E   AG++ +V  Y ALID   K G V  A      M  + +
Sbjct: 365 IDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 424

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           +P+ V +N++I A G+    +   D   + +     +  D ++  A+ KA  +       
Sbjct: 425 RPNVVTYNSIIDAFGRPATTESVVDDAGQTS----ELQIDSLSSSAVEKATKSLVADRED 480

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC--SVYDDMTKKGVIPDEVFLSALI 311
             + K+  +   +   +           +G  E  C   V+  M +  + P+ V  SA++
Sbjct: 481 NRIIKIFGQLAAEKAGQ--------AKNSGGQEMMCILGVFHKMHELEIKPNVVTFSAIL 532

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           +        E A  +L+E +     V  +++  LMG   N   W++A  L++ +K +   
Sbjct: 533 NACSRCNSFEEASMLLEELRLFDNQVYGVAHGLLMGYRENV--WEQAQSLFDEVKLMD-- 588

Query: 372 PTVSTMNALITALCD 386
              ST +A   AL D
Sbjct: 589 --SSTASAFYNALTD 601


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  151 bits (382), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 213/443 (48%), Gaps = 26/443 (5%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARF-FNV-----CKS 73
           + S  + +YN L+    R G++   + L ++M       +D+  H    FN+     C++
Sbjct: 40  ECSPSMVTYNTLLDGLFRTGKLERAMALFQEM-------LDRRSHDVISFNILVTGLCRA 92

Query: 74  QKAIKEAFRFFKLVPN---PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            K I+ A  FF+ + +   P + T+++L+  +C +++ S+ A ++L  ++  G   D   
Sbjct: 93  GK-IETALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQ-AVELLESMKARGCSPDVIT 150

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           YT L+    K  KV A +EV  EM++AG  PN+ TY +L+ G  +A +V+ A      M 
Sbjct: 151 YTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMT 210

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            +   P+ V +  LI    + G V  A  +LA+M  +     PD +    L+     A Q
Sbjct: 211 CRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGT--PDLMIYNMLINGLCKADQ 268

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           VD +  + +      IK     Y+  I    ++   + AC +   +  +G  PD +  S 
Sbjct: 269 VDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYST 328

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LID    AGKV+ AF++ +     G    +++YS+L+     A    +A  L   M  + 
Sbjct: 329 LIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 388

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE-VG 428
             P+  T N+LI  LCD + L + +E++ +M+     P+ +TY+IL+    R + V+   
Sbjct: 389 TPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAA 448

Query: 429 LMLLSQAKEDGVIPNLVMFKCII 451
           L    +  ++GVIP+ + +  ++
Sbjct: 449 LDYFQEMIDNGVIPDHITYSILL 471



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 158/323 (48%), Gaps = 12/323 (3%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M + G EPNV TY +LIDG  K  +  +A   +  M+S    P  V +N L+    ++G 
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 213 VDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           ++RA  +  EM +   H V    I+   L+     AG+++ A E ++   K + + +P V
Sbjct: 61  LERAMALFQEMLDRRSHDV----ISFNILVTGLCRAGKIETALEFFR---KMDDRCSPNV 113

Query: 272 --YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y++ I+   +      A  + + M  +G  PD +  + L+D      KV AA+E+L+E
Sbjct: 114 ITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLRE 173

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             + G    +++Y+SL+     A+    AL L   M      P V T   LI  LC   +
Sbjct: 174 MLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGR 233

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +     +L+DM   G  P+ + Y++L+    + D V+  + LL +A   G+ P++V +  
Sbjct: 234 VKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSS 293

Query: 450 II-GMC-SRRYEKARTLNEHVLS 470
           +I G+C S R ++A  L  +V S
Sbjct: 294 VIYGLCRSNRLDEACRLLLYVKS 316



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 199/461 (43%), Gaps = 56/461 (12%)

Query: 90  PTLSTFNMLMS-VCASSKDS-------------------------EGAFQVLRLVQEAGL 123
           P + T+N L+  +C +++                           +G F+  +L +   L
Sbjct: 8   PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 67

Query: 124 --------KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
                     D   +  L+T   ++GK++   E F +M +    PNV TY  LIDG  KA
Sbjct: 68  FQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKM-DDRCSPNVITYSVLIDGLCKA 126

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            +V++A      M+++   PD + +  L+    +   V  A++VL EM  +   V P+ +
Sbjct: 127 NRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREM-LDAGCV-PNLV 184

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVY 292
           T  +L+     A +V  A     ++     +G TP V  Y   I+   + G  + AC++ 
Sbjct: 185 TYNSLLHGLCRARRVSDA---LALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAML 241

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            DM  KG  PD +  + LI+    A +V+ +  +L+ A + GI   +++YSS++     +
Sbjct: 242 ADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRS 301

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
               +A  L  ++KS    P V   + LI  LC   ++ +  ++   M   G   + +TY
Sbjct: 302 NRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTY 361

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKARTLNEHVLS 470
           S L+    +   V+   +LL++    G  P+ + +  +I G+C   + ++A  L E +  
Sbjct: 362 STLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMER 421

Query: 471 FNSGRPQIE-----------NKWTSLALMVYREAIVAGTIP 500
            N     +             +  S AL  ++E I  G IP
Sbjct: 422 SNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIP 462



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 8/147 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAF----RFFKLVPN 89
           L + G++ E  DL E M   G  D D V ++   + +CK+ + + EA     R  ++   
Sbjct: 333 LCKAGKVDEAFDLYEVMTGDGC-DADVVTYSTLIDGLCKAGR-VDEAHLLLARMVRMGTP 390

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFE 148
           P+  T+N L+         + A +++  ++ +        Y  LI    +  +VD A  +
Sbjct: 391 PSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALD 450

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKA 175
            F EM++ G+ P+  TY  L++G  K+
Sbjct: 451 YFQEMIDNGVIPDHITYSILLEGLKKS 477


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 202/411 (49%), Gaps = 12/411 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SV 101
           +  +M  KG    +  Y      +C +++ I EA   F  + +    PT+ T+ +L+ S+
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
           C S + SE A  +++ ++E G+K +   YT LI +     K +   E+  +M+  G+ PN
Sbjct: 334 CGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
           V TY ALI+G  K G +  A     +M S+ + P+   +N LI    +S  V +A  VL 
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLN 451

Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
           +M      V PD +T  +L+     +G  D A  +  +++   +      YT  I+   +
Sbjct: 452 KMLE--RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
           +   E AC ++D + +KGV P+ V  +ALID    AGKV+ A  +L++  ++      ++
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLT 569

Query: 342 YSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +++L+ G C++ K  ++A  L E M  I L+PTVST   LI  L               M
Sbjct: 570 FNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            S G  P+  TY+  +    R+  +     ++++ +E+GV P+L  +  +I
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 130/505 (25%), Positives = 215/505 (42%), Gaps = 33/505 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--QKAIKEAFRFF 84
           +YN LI    ++G I + +D++E ME + L    + Y+      CKS   KA+    +  
Sbjct: 395 TYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKML 454

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +    P + T+N L+     S + + A+++L L+ + GL  D   YT++I +  KS +V+
Sbjct: 455 ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVE 514

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++F  +   G+ PNV  Y ALIDG  KAG+V +A      M SKN  P+ + FNALI
Sbjct: 515 EACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALI 574

Query: 205 TACGQSGAVDRAFDVLAEMNAEV--HP-VDPDHITIGALMKACANAGQVDRAREVYKMIH 261
                 G +  A  +L E   ++   P V  D I I  L+K     G  D A   ++ + 
Sbjct: 575 HGLCADGKLKEA-TLLEEKMVKIGLQPTVSTDTILIHRLLK----DGDFDHAYSRFQQML 629

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
               K     YT  I    + G    A  +   M + GV PD    S+LI   G  G+  
Sbjct: 630 SSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTN 689

Query: 322 AAFEILQEAKNQGISVGIISYSSLMG------------------ACSNAKNWQKALELYE 363
            AF++L+  ++ G      ++ SL+                   A SN   +   +EL E
Sbjct: 690 FAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLE 749

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACERK 422
            M    + P   +   LI  +C+   L    +V   M ++ G+ P+ + ++ LL  C + 
Sbjct: 750 KMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKL 809

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
                   ++      G +P L   K +I    ++ EK R  +        G  + E  W
Sbjct: 810 KKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAW 869

Query: 483 TSLALMVYREAIVAGTIPTVEVVSK 507
             +   V ++ +V        V+ K
Sbjct: 870 KIIIDGVGKQGLVEAFYELFNVMEK 894



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 112/498 (22%), Positives = 211/498 (42%), Gaps = 27/498 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N +++      + E A Q +  + EAGL  D   YT+LI    +   +D+ F+V
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+EM   G   N   Y  LI G   A ++ +A   +  M+     P    +  LI +   
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCG 335

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           S     A +++ EM  E   + P+  T   L+ +  +  + ++ARE+   + +  +    
Sbjct: 336 SERKSEALNLVKEM--EETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVEAAFEILQ 328
             Y   IN   + G  E A  V + M  + + P+    + LI   G+    V  A  +L 
Sbjct: 394 ITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELI--KGYCKSNVHKAMGVLN 451

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +   + +   +++Y+SL+     + N+  A  L   M    L P   T  ++I +LC   
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSK 511

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ +  ++   ++  G+ PN + Y+ L+    +   V+   ++L +      +PN + F 
Sbjct: 512 RVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFN 571

Query: 449 CII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV-----------YREAIVA 496
            +I G+C+    K  TL E  +     +P +      +  ++           +++ + +
Sbjct: 572 ALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS 631

Query: 497 GTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP 552
           GT P     +  +       +L    D+  ++ EN GVS D    S   SLI G+G+   
Sbjct: 632 GTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMREN-GVSPDLFTYS---SLIKGYGDLGQ 687

Query: 553 R--AFSLLEEAASFGIVP 568
              AF +L+     G  P
Sbjct: 688 TNFAFDVLKRMRDTGCEP 705



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 137/308 (44%), Gaps = 23/308 (7%)

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           N   + +V++Y +L+      G V   F    +M               I +C   G   
Sbjct: 116 NPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLM---------------IKSCDSVGDAL 160

Query: 215 RAFDVLAEMNAEVHPVDPDHITIG---ALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
              D+  +MN +        + IG    L+ + A  G VD  ++VY  +     K  P +
Sbjct: 161 YVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVY--MEMLEDKVCPNI 218

Query: 272 YTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           YT    +N   + G+ E A      + + G+ PD    ++LI        +++AF++  E
Sbjct: 219 YTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNE 278

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G     ++Y+ L+     A+   +A++L+  MK  +  PTV T   LI +LC  ++
Sbjct: 279 MPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSER 338

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             + + ++ +M+  G+ PN  TY++L+ +   +   E    LL Q  E G++PN++ +  
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNA 398

Query: 450 II-GMCSR 456
           +I G C R
Sbjct: 399 LINGYCKR 406



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 143/368 (38%), Gaps = 61/368 (16%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF----RFFKLVPNPTL 92
           + G++ E   +LE M  K  L     ++A    +C   K +KEA     +  K+   PT+
Sbjct: 544 KAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGK-LKEATLLEEKMVKIGLQPTV 602

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           ST  +L+       D + A+   + +  +G K D   YTT I T  + G++    ++  +
Sbjct: 603 STDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAK 662

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT------- 205
           M   G+ P++ TY +LI G    GQ   AF     MR    +P +  F +LI        
Sbjct: 663 MRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKY 722

Query: 206 ---------ACGQSGAVDRAFDVLAEMNAEV--HPVDPDHITIGALMKACANAGQVDRAR 254
                     C  S  ++  FD + E+  ++  H V P+  +   L+      G +  A 
Sbjct: 723 GKQKGSEPELCAMSNMME--FDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAE 780

Query: 255 EVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP----------- 302
           +V+  + +   I  +  V+   ++CC +      A  V DDM   G +P           
Sbjct: 781 KVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICG 840

Query: 303 ------------------------DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
                                   DE+    +ID  G  G VEA +E+    +  G    
Sbjct: 841 LYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFS 900

Query: 339 IISYSSLM 346
             +YS L+
Sbjct: 901 SQTYSLLI 908



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 165/395 (41%), Gaps = 52/395 (13%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y +L+T    +G V  +F++   M+ +        Y  ++D C K  +  +    Y ++ 
Sbjct: 126 YASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALY--VLDLCRKMNKDERFELKYKLII 183

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
                     +N L+ +  + G VD    V  EM  +   V P+  T   ++      G 
Sbjct: 184 G--------CYNTLLNSLARFGLVDEMKQVYMEMLED--KVCPNIYTYNKMVNGYCKLGN 233

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           V+ A +    I +  +      YT  I    Q  D + A  V+++M  KG   +EV  + 
Sbjct: 234 VEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTH 293

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     A +++ A ++  + K+      + +Y+ L+ +   ++   +AL L + M+   
Sbjct: 294 LIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETG 353

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER------- 421
           +KP + T   LI +LC   +  K  E+L  M   GL PN ITY+ L+   C+R       
Sbjct: 354 IKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAV 413

Query: 422 --------------------------KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
                                     K +V   + +L++  E  V+P++V +  +I G C
Sbjct: 414 DVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQC 473

Query: 455 -SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 488
            S  ++ A  L    LS  + R  + ++WT  +++
Sbjct: 474 RSGNFDSAYRL----LSLMNDRGLVPDQWTYTSMI 504


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 180/379 (47%), Gaps = 39/379 (10%)

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           +K +  +Y+ +I    ++G VD  FE ++EM+  G+ PN  TYG+LI G    G+  + F
Sbjct: 181 VKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGF 240

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
           G    M  + +     VF  LI    ++G +  A ++  EM    +  +P+ +T  ALM 
Sbjct: 241 GLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGY--EPNIVTCTALMG 298

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
                G VD ARE++  I ++  K     Y + I+   + G    A  V+D+M ++GV+P
Sbjct: 299 GYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVP 358

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII---------------------- 340
           + V  ++LID    AG+V  A+EI++     G++  I+                      
Sbjct: 359 NIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLF 418

Query: 341 -------------SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                        SY+ L+  C  ++   +A+ L   M    L P + T + LI  LC  
Sbjct: 419 NQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRS 478

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++     +L++M   G  P+TITYSILL A  +K  ++  + L +Q  + G+ P+++ +
Sbjct: 479 GRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCY 538

Query: 448 KCII-GMC-SRRYEKARTL 464
             +I G C S R ++A  L
Sbjct: 539 TIMIDGYCKSERIDEAINL 557



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 191/436 (43%), Gaps = 56/436 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVY-------HARFFNVCKSQKAIKEAFRFFK 85
           N L   GR++E ++LL  +E++   + D  +       ++   +       + E F F+ 
Sbjct: 150 NGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYN 209

Query: 86  ------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                 + PN   +  +++  +C   K  EG   V  +++  GL     ++T LI    K
Sbjct: 210 EMMGNGVCPNE-FTYGSLIRGLCGVGKFLEGFGLVDEMIRR-GLDVSVYVFTVLIDGLCK 267

Query: 140 SGKVDAMFEVFHEMVNAGIEPN-----------------------------------VHT 164
           +G +    E+F EMVN G EPN                                   V T
Sbjct: 268 NGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWT 327

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y   I G  K G+V  A   +  M  + V P+ V +N+LI    ++G V  A++++  M+
Sbjct: 328 YNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMH 387

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQT 282
                + PD +T   L+     + ++D+A  ++  + +  +  TP+V  YTI I+ C  +
Sbjct: 388 RS--GLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGL--TPDVWSYTILIHGCCTS 443

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
                A ++  DM  K ++P  V  S LID    +G++  A+ +L E   +G     I+Y
Sbjct: 444 RRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITY 503

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           S L+ A    ++  +A+ L+  M    L+P V     +I   C  +++ + + +  +M  
Sbjct: 504 SILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHM 563

Query: 403 LGLCPNTITYSILLVA 418
             L P+ +TY+IL  A
Sbjct: 564 KNLVPDIVTYTILFNA 579



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 112/490 (22%), Positives = 207/490 (42%), Gaps = 44/490 (8%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           +F +   + + G   D     T++     +G V    E   E+VN G   N  +YG LI+
Sbjct: 91  SFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILIN 150

Query: 171 GCAKAGQVAKAFGAYGIMRSKN--------VKPDRVVFNALITACGQSGAVDRAFDVLAE 222
           G  + G+V +A     ++  +         VK + V+++ +I    ++G VD  F+   E
Sbjct: 151 GLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNE 210

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M    + V P+  T G+L++     G+      +   + +  +  +  V+T+ I+   + 
Sbjct: 211 MMG--NGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKN 268

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G    A  ++D+M  +G  P+ V  +AL+      G V+ A E+       G    + +Y
Sbjct: 269 GMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTY 328

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           +  +         + A+ +++ M    + P + T N+LI  LC   ++    E++  M  
Sbjct: 329 NVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHR 388

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEK 460
            GL P+ +T  ILL    +   ++  ++L +Q  E G+ P++  +  +I  C  SRR  +
Sbjct: 389 SGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGE 448

Query: 461 A---------RTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAGTIPTVE 503
           A         + L  H+++++        SGR  I N W  L      E  V G +P   
Sbjct: 449 AMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGR--ISNAWRLL-----NEMHVKGPLPDTI 501

Query: 504 VVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGF--GEYDPRAFSLL 558
             S +L  L    + D    L   +   G+  D +  +    +IDG+   E    A +L 
Sbjct: 502 TYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYT---IMIDGYCKSERIDEAINLF 558

Query: 559 EEAASFGIVP 568
            E     +VP
Sbjct: 559 REMHMKNLVP 568



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 170/403 (42%), Gaps = 15/403 (3%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LIR     G+  E   L+++M R+GL     V+      +CK+   ++    F ++
Sbjct: 222 TYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEM 281

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V     P + T   LM       + + A ++   + E G K D   Y   I    K G+V
Sbjct: 282 VNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRV 341

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                VF EM   G+ PN+ TY +LID   KAG+V+ A+     M    + PD V    L
Sbjct: 342 RDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCIL 401

Query: 204 ITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +    +S  +D+A   F+ L E       + PD  +   L+  C  + ++  A  + + +
Sbjct: 402 LDGLCKSKRLDQAILLFNQLVESG-----LTPDVWSYTILIHGCCTSRRMGEAMNLLRDM 456

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
           H  N+      Y+  I+   ++G    A  + ++M  KG +PD +  S L+D       +
Sbjct: 457 HLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHL 516

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A  +  +   +G+   ++ Y+ ++     ++   +A+ L+  M    L P + T   L
Sbjct: 517 DEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTIL 576

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
             A+          + ++ ++ +   P  + Y   L   E  D
Sbjct: 577 FNAVFKSGSNSYEWKFVNVIRDINPPPRVLKYLAALCKSEHLD 619



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 11/187 (5%)

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
           C    G   F+ S++  + K+G   D V L+ ++      G V  A E   E  N G S+
Sbjct: 81  CFFHLGHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSL 140

Query: 338 GIISYSSLM-GACSNAKNWQKALELYEHMKSIK--------LKPTVSTMNALITALCDGD 388
             +SY  L+ G C N +   +A+ L   ++  K        +K  V   + +I  LC   
Sbjct: 141 NEVSYGILINGLCENGRV-NEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNG 199

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            + +  E  ++M   G+CPN  TY  L+           G  L+ +    G+  ++ +F 
Sbjct: 200 FVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFT 259

Query: 449 CII-GMC 454
            +I G+C
Sbjct: 260 VLIDGLC 266


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 177/359 (49%), Gaps = 4/359 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++  L++      D+  A ++L+ +     K +  +Y+T+I    K   V   + +F EM
Sbjct: 166 SYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEM 225

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              GI  +V TY  LI G    G++ +A G    M  K + P+   +N L+ A  + G V
Sbjct: 226 TVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKV 285

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A  VLA M      V PD IT   LM       +V +A+ V+  +    +      YT
Sbjct: 286 KEAKSVLAVMLKAC--VKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYT 343

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I IN   +    + A +++ +M +K ++P  V  S+LID    +G++   ++++ E  ++
Sbjct: 344 ILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDR 403

Query: 334 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           G    +I+YSSL+ G C N  +  +A+ L+  MK   ++P   T   L+  LC G +L  
Sbjct: 404 GQPANVITYSSLIDGLCKNG-HLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKD 462

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             EV  D+ + G   N  TY++++    ++  +E  L +LS+ +++G IP+ V F+ II
Sbjct: 463 AQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIII 521



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 181/435 (41%), Gaps = 41/435 (9%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD     F+ M+     P +  +  ++D  AK    + A      +  K ++PD +  N 
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI      G +   F VLA++    +P  PD +T+  L+K     GQV +A   +  +  
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYP--PDTVTLNTLIKGLCLKGQVKKALHFHDKLLA 157

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              +     Y   IN   + GD   A  +   +  +   P+ V  S +ID       V  
Sbjct: 158 QGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSE 217

Query: 323 AFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           A+ +  E   +GIS  +++YS+L+ G C   K  ++A+ L   M    + P V T N L+
Sbjct: 218 AYGLFSEMTVKGISADVVTYSTLIYGFCIEGK-LKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            ALC   ++ +   VL+ M    + P+ ITYS L+       +V+    + +     GV 
Sbjct: 277 DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVT 336

Query: 442 PNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 500
           P++  +  +I G C                        +NK    AL +++E      +P
Sbjct: 337 PDVHTYTILINGFC------------------------KNKMVDEALNLFKEMHQKNMVP 372

Query: 501 TVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPR 553
            +   S ++  L    ++PY  D+ + +  + G  A+ +  S   SLIDG    G  D R
Sbjct: 373 GIVTYSSLIDGLCKSGRIPYVWDLIDEM-HDRGQPANVITYS---SLIDGLCKNGHLD-R 427

Query: 554 AFSLLEEAASFGIVP 568
           A +L  +    GI P
Sbjct: 428 AIALFNKMKDQGIRP 442



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/431 (22%), Positives = 180/431 (41%), Gaps = 44/431 (10%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           +H++  ++     A+ +  R   +   P +  FN ++   A  K    A  +   ++  G
Sbjct: 30  FHSQPPSIQNVDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKG 89

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           ++ D      LI      G++   F V  +++  G  P+  T   LI G    GQV KA 
Sbjct: 90  IQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKAL 149

Query: 183 G---------------AYGIM--------------------RSKNVKPDRVVFNALITAC 207
                           +YG +                      +  KP+ V+++ +I A 
Sbjct: 150 HFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDAL 209

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +   V  A+ + +EM   V  +  D +T   L+      G++   +E   ++++  +K 
Sbjct: 210 CKYQLVSEAYGLFSEMT--VKGISADVVTYSTLIYGFCIEGKL---KEAIGLLNEMVLKT 264

Query: 268 -TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P VYT  I ++   + G  + A SV   M K  V PD +  S L+D      +V+ A 
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQ 324

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +       G++  + +Y+ L+      K   +AL L++ M    + P + T ++LI  L
Sbjct: 325 HVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGL 384

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++P   +++ +M   G   N ITYS L+    +   ++  + L ++ K+ G+ PN 
Sbjct: 385 CKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNT 444

Query: 445 VMFKCII-GMC 454
             F  ++ G+C
Sbjct: 445 FTFTILLDGLC 455



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 6/237 (2%)

Query: 191  KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
            K ++PD    N LI      G +   F +LA++    +   PD IT   L+      GQV
Sbjct: 955  KGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGY--HPDTITFTTLINGLCLKGQV 1012

Query: 251  DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
            ++A   +  +     +     Y   IN   + GD   A  +   +  +   PD V  + +
Sbjct: 1013 NKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTI 1072

Query: 311  IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIK 369
            ID       V  A+ +  E   +GIS  +++Y++L+ G C   K  ++A+ L   M    
Sbjct: 1073 IDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGK-LKEAIGLLNKMVLKT 1131

Query: 370  LKPTVSTMNALITALCD--GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
            + P V T N L+ ALC    D L +++ +LS M+  G   N +T+ I++ A   KD+
Sbjct: 1132 INPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDE 1188



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 2/228 (0%)

Query: 226  EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
            E+  + PD  T+  L+    + GQ+     +   I K         +T  IN     G  
Sbjct: 953  ELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQV 1012

Query: 286  EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
              A   +D +  +G   ++V    LI+     G   AA ++L++   +     ++ Y+++
Sbjct: 1013 NKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTI 1072

Query: 346  MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
            + A    +   KA  L+  M    +   V T N LI   C   +L + + +L+ M    +
Sbjct: 1073 IDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTI 1132

Query: 406  CPNTITYSILLVAC--ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             PN  TY+IL+ A   E KD ++  L +LS+ +++G   N V F+ II
Sbjct: 1133 NPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIII 1180



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 8/229 (3%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P L T N+L++           F +L  + + G   D   +TTLI      G+V+     
Sbjct: 959  PDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALHF 1018

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              +++  G + N  +YG LI+G  K G    A      +  +  KPD V++N +I A  +
Sbjct: 1019 HDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCK 1078

Query: 210  SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
               V +A+ +  EMN  V  +  D +T   L+      G++  A  +   +    I    
Sbjct: 1079 HQLVSKAYGLFFEMN--VKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNV 1136

Query: 270  EVYTIAINCCSQTG------DWEFACSVYDDMTKKGVIPDEVFLSALID 312
              Y I ++   + G             + D+  K   +  E+ +SAL +
Sbjct: 1137 RTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFE 1185



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 7/200 (3%)

Query: 33   NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEAFRFFKLVP 88
            N L  +G++++ +   + +  +G   +++V +    N VCK   ++ AIK   +    + 
Sbjct: 1004 NGLCLKGQVNKALHFHDKLLAQGF-QLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLT 1062

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             P +  +N ++      +    A+ +   +   G+ AD   Y TLI      GK+     
Sbjct: 1063 KPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIG 1122

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            + ++MV   I PNV TY  L+D   K G+  + ++      M     K + V F  +I+A
Sbjct: 1123 LLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISA 1182

Query: 207  CGQSGAVDRAFDVLAEMNAE 226
              +    D+   +L EM A 
Sbjct: 1183 LFEKDENDKVEKLLHEMIAR 1202



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/286 (20%), Positives = 115/286 (40%), Gaps = 39/286 (13%)

Query: 122  GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
            G++ D      LI      G++   F +  +++  G  P+  T+  LI+G    GQV KA
Sbjct: 956  GIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKA 1015

Query: 182  FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
               +  + ++  + ++V +  LI    + G    A  +L +++  +    PD +    ++
Sbjct: 1016 LHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRL--TKPDVVMYNTII 1073

Query: 242  KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
             A      V +A                                     ++ +M  KG+ 
Sbjct: 1074 DALCKHQLVSKAY-----------------------------------GLFFEMNVKGIS 1098

Query: 302  PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN-WQKAL 359
             D V  + LI      GK++ A  +L +   + I+  + +Y+ L+ A C   K+   ++L
Sbjct: 1099 ADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESL 1158

Query: 360  ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
             +   M+    K    T   +I+AL + D+  K  ++L +M + GL
Sbjct: 1159 SMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 79/188 (42%), Gaps = 3/188 (1%)

Query: 285  WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            +  A S+   +  KG+ PD   L+ LI+   H G++   F IL +   +G     I++++
Sbjct: 942  YSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTT 1001

Query: 345  LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
            L+          KAL  ++ + +   +    +   LI  +C        +++L  +    
Sbjct: 1002 LINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRL 1061

Query: 405  LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKA 461
              P+ + Y+ ++ A  +   V     L  +    G+  ++V +  +I G C   +  E  
Sbjct: 1062 TKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAI 1121

Query: 462  RTLNEHVL 469
              LN+ VL
Sbjct: 1122 GLLNKMVL 1129



 Score = 39.3 bits (90), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 353  KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            K++  A+ L   ++   ++P + T+N LI   C   Q+     +L+ +   G  P+TIT+
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 413  SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            + L+     K  V   L    +    G   N V +  +I G+C
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVC 1042


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 206/427 (48%), Gaps = 12/427 (2%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLL---DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +  L+  G + E   L + +   G+L   D   ++ AR  N   S   I+ AFR F+   
Sbjct: 188 FQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSN---SFDGIRTAFRVFREYS 244

Query: 89  NPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              +     ++N+++ +       + A  +L  ++  G   D   Y+ ++    +  ++ 
Sbjct: 245 EVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLG 304

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
            + ++  E+   G++PN +TY ++I    K G+V +A     +M+++ + PD VV+  LI
Sbjct: 305 KVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLI 364

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
           +  G+SG V   + +  EM  +   + PD +T  +++     AG+V  AR+++  +    
Sbjct: 365 SGFGKSGNVSVEYKLFDEMKRK--KIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKG 422

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +K     YT  I+   + G+ + A S+++ M +KG+ P+ V  +AL+D     G+V+ A 
Sbjct: 423 LKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIAN 482

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+L E   +G+   + +Y++L+       N ++A++L E M      P   T   ++ A 
Sbjct: 483 ELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAY 542

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++ K  E+L  M   GL P  +T+++L+        +E G  L+    + G++PN 
Sbjct: 543 CKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNA 602

Query: 445 VMFKCII 451
             F  ++
Sbjct: 603 TTFNSLM 609



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 200/456 (43%), Gaps = 50/456 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRF 83
           SYN ++    + G++ E   LL  ME +G +     Y       C+ +   K +K     
Sbjct: 254 SYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEEL 313

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P   T+N ++S    +     A QVLR+++   +  D  +YTTLI+   KSG V
Sbjct: 314 QRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNV 373

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
              +++F EM    I P+  TY ++I G  +AG+V +A   +  M SK +KPD V + AL
Sbjct: 374 SVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTAL 433

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    ++G +  AF +  +M  +   + P+ +T  AL+      G+VD A E   ++H+ 
Sbjct: 434 IDGYCKAGEMKEAFSLHNQMVEK--GLTPNVVTYTALVDGLCKCGEVDIANE---LLHEM 488

Query: 264 NIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
           + KG  P V  Y   IN   + G+ E A  + ++M   G  PD +  + ++D     G++
Sbjct: 489 SEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEM 548

Query: 321 EAAFEILQEAKNQGISVGIISYSSLM----------------------GACSNA------ 352
             A E+L+   ++G+   I++++ LM                      G   NA      
Sbjct: 549 AKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSL 608

Query: 353 -------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
                   N +  +E+Y+ M +  + P  +T N LI   C    + +   +  +M   G 
Sbjct: 609 MKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGF 668

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
                +Y+ L+    ++   E    L  + +  G I
Sbjct: 669 SLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFI 704



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/418 (24%), Positives = 192/418 (45%), Gaps = 15/418 (3%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
           ++YN +I    + GR+ E   +L  M+ + +   + VY        KS     E ++ F 
Sbjct: 323 YTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVE-YKLFD 381

Query: 85  -----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                K+VP+    T +M+  +C + K  E A ++   +   GLK D   YT LI    K
Sbjct: 382 EMKRKKIVPDFVTYT-SMIHGLCQAGKVVE-ARKLFSEMLSKGLKPDEVTYTALIDGYCK 439

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +G++   F + ++MV  G+ PNV TY AL+DG  K G+V  A      M  K ++P+   
Sbjct: 440 AGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCT 499

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +NALI    + G +++A  ++ EM  ++    PD IT   +M A    G++ +A E+ ++
Sbjct: 500 YNALINGLCKVGNIEQAVKLMEEM--DLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRI 557

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +    ++ T   + + +N    +G  E    +   M  KG++P+    ++L+        
Sbjct: 558 MLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNN 617

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           + A  EI +    QG+     +Y+ L+     A+N ++A  L++ M       T ++ N+
Sbjct: 618 MRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNS 677

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           LI       +  +  ++  +M++ G       Y I +     + + E  L L  +A E
Sbjct: 678 LIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIE 735



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/401 (22%), Positives = 175/401 (43%), Gaps = 42/401 (10%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDS-EGAFQVLRLVQEA 121
           FF V      + EA + F  + N     ++ + N+ ++  ++S D    AF+V R   E 
Sbjct: 187 FFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFREYSEV 246

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G+  +   Y  ++    + GKV     +  +M   G  P+V +Y  ++DG  +  Q+ K 
Sbjct: 247 GVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKV 306

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
                 ++ K +KP++  +N++I+   ++                               
Sbjct: 307 LKLMEELQRKGLKPNQYTYNSIISFLCKT------------------------------- 335

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
                 G+V  A +V +++    I     VYT  I+   ++G+      ++D+M +K ++
Sbjct: 336 ------GRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIV 389

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD V  +++I     AGKV  A ++  E  ++G+    ++Y++L+     A   ++A  L
Sbjct: 390 PDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSL 449

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           +  M    L P V T  AL+  LC   ++    E+L +M   GL PN  TY+ L+    +
Sbjct: 450 HNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCK 509

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
             ++E  + L+ +    G  P+ + +  I+    +  E A+
Sbjct: 510 VGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAK 550



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 117/272 (43%), Gaps = 9/272 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIK--EAFRFFKLVPN 89
           L + G +    +LL +M  KGL      Y+A    +CK    ++A+K  E        P+
Sbjct: 472 LCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPD 531

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
               T+  +M       +   A ++LR++ + GL+     +  L+     SG ++    +
Sbjct: 532 TI--TYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERL 589

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M++ GI PN  T+ +L+        +      Y  M ++ V PD   +N LI    +
Sbjct: 590 IKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCK 649

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +  A+ +  EM  +   +     +  +L+K      + + AR++++ +  +      
Sbjct: 650 ARNMKEAWFLHKEMVEKGFSLTA--ASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEK 707

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
           E+Y I ++   + G+WE    + D+  +K ++
Sbjct: 708 EIYDIFVDVNYEEGNWENTLELCDEAIEKCLV 739


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 210/489 (42%), Gaps = 47/489 (9%)

Query: 1   MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           +++G  + +   +     A YA D          L +  +I +   +L+  + +G     
Sbjct: 136 LENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEV 195

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
            VY       CK+ + +K+A   F+ +P+P    +N ++       D +GA + L+ + E
Sbjct: 196 SVYTILTRAFCKTGR-LKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNE 254

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
             +  D   Y  LI    K+ K D   E+ HEMV+ G+ P+  T+ +++DG  KAG+  +
Sbjct: 255 RKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFER 314

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A     +M  +N +P    +N LI+   +   VDRA D++ E  +      PD +T   L
Sbjct: 315 AHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSS--GFVPDVVTYSIL 372

Query: 241 MKACANAGQVDRAREVYKMIH---------KYN--IKG---------------------- 267
                  G++D A E+ K +           YN  I G                      
Sbjct: 373 ADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGF 432

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P+V  YTI ++   + G  + A  + + M K+G  P  +  +AL++     G+V+ A  
Sbjct: 433 VPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHH 492

Query: 326 ILQEAKNQGISVGIISYSSLM-GAC--SNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           I +E  ++  +   ++Y SL+ G C  S  K  QK ++       I+  P +   NAL+ 
Sbjct: 493 IFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD------GIRGTPYIDVYNALMD 546

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
             C   +L +   V  DM   G  PN  TY+I++    +   V+     L      G +P
Sbjct: 547 GYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVP 606

Query: 443 NLVMFKCII 451
           ++V +  II
Sbjct: 607 DVVSYNIII 615



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/471 (21%), Positives = 203/471 (43%), Gaps = 52/471 (11%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  + +YN LI    +  +  +  ++L +M  +G+      +++    +CK+ K  + A
Sbjct: 257 VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK-FERA 315

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
                ++      P+  T+N L+S     ++ + A  ++     +G   D   Y+ L   
Sbjct: 316 HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADG 375

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G++D  FE+  EM   G  PN+ TY  LIDG  KA +  KA+     + S    PD
Sbjct: 376 LCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPD 435

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +  ++    + G +D+A  ++  M        P  IT  ALM+     G+VD A  +
Sbjct: 436 VVTYTIIVDGLCKEGRLDKALKMVEGMLK--RGCTPSVITYTALMEGLCRTGRVDEAHHI 493

Query: 257 YK----------------MIHKY--------------NIKGTP--EVYTIAINCCSQTGD 284
           +K                +++ Y               I+GTP  +VY   ++   + G 
Sbjct: 494 FKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGR 553

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            +   +V++DM  +G +P+    + ++D     GKV+ AF  L+   + G    ++SY+ 
Sbjct: 554 LDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNI 613

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           ++     A   ++A ++ + M    + P   T N L+   C  ++    + +L +M   G
Sbjct: 614 IIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAG 673

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           + P+ +TY+ L+    + + +     L+ +   +G         C++  C+
Sbjct: 674 VDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNG---------CVVSACT 715



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 157/366 (42%), Gaps = 8/366 (2%)

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
           KD + A        + G K         + T  ++G  D +  +F  M++AG  P+ +TY
Sbjct: 104 KDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTY 163

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
             +I    +  Q+ KAF      + +  KP+  V+  L  A  ++G +  A ++   + +
Sbjct: 164 HLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS 223

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
                 PD I   A++         D A E  K +++  +      Y I I+   +    
Sbjct: 224 ------PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKT 277

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A  +  +M  +GV PD V  ++++D    AGK E A  +L     +       +Y++L
Sbjct: 278 DKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTL 337

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +      +N  +A +L +   S    P V T + L   LC   ++ +  E++ +M   G 
Sbjct: 338 ISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGC 397

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKART 463
            PN +TY+ L+    +    E    LL      G +P++V +  I+ G+C   R +KA  
Sbjct: 398 TPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALK 457

Query: 464 LNEHVL 469
           + E +L
Sbjct: 458 MVEGML 463



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 199/461 (43%), Gaps = 21/461 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPNPTLS 93
           L R GR+ E   + ++M  K        Y +     CKS +  KEA +    +   P + 
Sbjct: 481 LCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRT-KEAQKVVDGIRGTPYID 539

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
            +N LM         +    V   +   G   + K Y  ++    K GKVD  F     M
Sbjct: 540 VYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESM 599

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            +AG  P+V +Y  +IDG  KA +  +A      M    + PD V +N L+    +    
Sbjct: 600 HSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERF 659

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG----TP 269
           D A  +L  M      VDPD++T   L+   +   Q +R  + Y+++H+    G      
Sbjct: 660 DDAVGILKNMIKA--GVDPDNVTYNTLI---SGLSQTNRLGDAYELMHEMLRNGCVVSAC 714

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I+   + G  + A  + D MT  GV  + V  +  ID     G+++ A  +L E
Sbjct: 715 TTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSE 774

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALCDGD 388
                  V   SY++++     A+   +A +L   M ++K L  T  T N LI A     
Sbjct: 775 MDTLRDEV---SYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTK 831

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L + + +L  M   G  P+ ITY++++    + D V+    L  +    G++ + V + 
Sbjct: 832 RLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYT 891

Query: 449 CII-GMCSR-RYEKARTLNEHVLSFNSGRPQIEN-KWTSLA 486
            +I G+C + R ++A  + E + S +    +I++ KW  +A
Sbjct: 892 VLIYGLCGQGRGKEALQVLEEMASSDC---EIDDLKWEDVA 929



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 130/315 (41%), Gaps = 24/315 (7%)

Query: 273 TIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           T   NC  QT    G  +   ++++ M   G  PD      +I       +++ AF +L 
Sbjct: 125 TFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLD 184

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +AK +G    +  Y+ L  A       + ALE++ ++ S    P     NA+I   C  +
Sbjct: 185 KAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----PDAIAYNAIIHGHCRKN 240

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
                +E L +M    + P+  TY+IL+    +    +    +L +  + GV P+ V F 
Sbjct: 241 DCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFN 300

Query: 449 CII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR-----------EAIV 495
            I+ G+C + ++E+A +L   V++  + RP      T ++ +  +           E + 
Sbjct: 301 SIMDGLCKAGKFERAHSLLA-VMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVS 359

Query: 496 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPR 553
           +G +P V   S +   L      D    LV+ +             +LIDG        +
Sbjct: 360 SGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEK 419

Query: 554 AFSLLEEAASFGIVP 568
           A+ LLE   S G VP
Sbjct: 420 AYELLESLVSSGFVP 434


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 187/382 (48%), Gaps = 9/382 (2%)

Query: 77  IKEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYT 131
           +KEA  F   V          ++  L++    S ++  A Q+LR ++   L + D  +YT
Sbjct: 139 VKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYT 198

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            +I +  K   V   ++++ EM+   I PNV T+ +LI G    GQ+ +A G    M   
Sbjct: 199 AIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLN 258

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           NV P+   FN LI    + G V +A  VL+ M  +   V+P+ +T  +LM       +V+
Sbjct: 259 NVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQ--GVEPNVVTYTSLMDGYFLVKEVN 316

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +A+ V+  I    +      Y++ IN   +    + A  ++ +M  K + P+ V  S+LI
Sbjct: 317 KAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLI 376

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKL 370
           D    +G++   ++++ E  N+G    II+Y+SL+ G C N +   KA+ L   MK   +
Sbjct: 377 DGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQ-VDKAIALLTKMKDEGI 435

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           +P +ST   L+  LC   +L     +  D+   G   N   Y++++    ++   +  L 
Sbjct: 436 QPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALS 495

Query: 431 LLSQAKEDGVIPNLVMFKCIIG 452
           LLSQ +++G +P+ V ++ +I 
Sbjct: 496 LLSQMEDNGCMPDAVTYETLIS 517



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 190/423 (44%), Gaps = 50/423 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  FN ++S        + A    + ++  G++ +   +  LI   +   +++  F +
Sbjct: 51  PPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILINCFSHLCQLNFAFSM 110

Query: 150 FHEMVNAGIEP----------------------NVH-------------TYGALIDGCAK 174
             +++  G +P                      N H             +YG LI+G  K
Sbjct: 111 VAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCK 170

Query: 175 AGQVAKAFGAY----GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           +G+   A        G++    V+PD +++ A+I +  +   V  A+D+ +EM   V  +
Sbjct: 171 SGETRAALQLLRKIEGLLL---VRPDVIMYTAIIDSFCKDKLVIDAYDLYSEM--IVKKI 225

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFA 288
            P+ +T  +L+      GQ+  A  +   +   N+   P VYT  I I+   + G+ + A
Sbjct: 226 YPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNV--NPNVYTFNILIDGLCKEGEVKKA 283

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
            SV   M K+GV P+ V  ++L+D      +V  A  +      +G++  + SYS ++  
Sbjct: 284 TSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMING 343

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
               K   +A++L++ M    + P   T ++LI  LC   ++    +++ ++ + G   N
Sbjct: 344 LCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPAN 403

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNE 466
            ITY+ LL    +   V+  + LL++ K++G+ P++  +  ++ G+C   R + A+ + +
Sbjct: 404 IITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQ 463

Query: 467 HVL 469
            +L
Sbjct: 464 DLL 466



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 176/401 (43%), Gaps = 32/401 (7%)

Query: 21  YAHDVSEQLH----SYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVC 71
           + H + ++ H    SY  LI    + G     + LL  +E   L+  D + Y A   + C
Sbjct: 146 HDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFC 205

Query: 72  KSQKAIKEAFRFF------KLVPNPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAG 122
           K  K + +A+  +      K+ PN  + TFN L+    +    K++ G    + L     
Sbjct: 206 KD-KLVIDAYDLYSEMIVKKIYPN--VVTFNSLIYGFCIVGQLKEAVGLLNEMSL---NN 259

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           +  +   +  LI    K G+V     V   M+  G+EPNV TY +L+DG     +V KA 
Sbjct: 260 VNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAK 319

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
             +  +  + V P+   ++ +I    ++  VD A  +  EM+  +  + P+ +T  +L+ 
Sbjct: 320 HVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMH--LKNMTPNTVTYSSLID 377

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKG 299
               +G   R  +V+ +I + N +G P     Y   +N   +    + A ++   M  +G
Sbjct: 378 GLCKSG---RISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEG 434

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + PD    + L+D     G+++ A  I Q+   +G  + I  Y+ ++        + +AL
Sbjct: 435 IQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEAL 494

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
            L   M+     P   T   LI+AL   ++  K +++L +M
Sbjct: 495 SLLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 9/210 (4%)

Query: 25  VSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  +HSY    N L +   + E + L ++M  K +      Y +    +CKS + I + 
Sbjct: 330 VTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGR-ISDV 388

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +     + N      + T+N L++    +   + A  +L  +++ G++ D   YTTL+  
Sbjct: 389 WDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDG 448

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K+G++     ++ +++  G   N+  Y  +I+G  K G   +A      M      PD
Sbjct: 449 LCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPD 508

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            V +  LI+A  ++    +A  +L EM A 
Sbjct: 509 AVTYETLISALFKNNKNGKAVKLLREMIAR 538


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 175/389 (44%), Gaps = 38/389 (9%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP  STF  ++S   +   +E A  +   ++E GLK   K +  L+   A+ G +     
Sbjct: 313 NPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAES 372

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM  +G+ P+ HTYG L+D  A  G+   A      M ++NV+P+  +F+ ++ +  
Sbjct: 373 IISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYR 432

Query: 209 QSGAVDRAFDVLAEM-NAEVHP--------------------------------VDPDHI 235
             G   + F+VL EM N+ V P                                ++PD +
Sbjct: 433 DRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVV 492

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+      G  DRA E+++ + +      P  Y I IN   +   W+    +   M
Sbjct: 493 TWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKM 552

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             +G++P+ V  + L+D  GH+G+   A + L+  K+ G+      Y++L+ A +     
Sbjct: 553 QSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLS 612

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           ++A+  Y  M S  L+P++  +N+LI A  +  +  +   +L  MK   + P+ +TY+ L
Sbjct: 613 EQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTL 672

Query: 416 LVACERKDDVE-----VGLMLLSQAKEDG 439
           + A  R D  +        M+LS    DG
Sbjct: 673 MKALIRVDKFDKVPAVYEEMILSGCTPDG 701



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 173/411 (42%), Gaps = 16/411 (3%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
           A + D   A   L +VQ +GL      +  +I+     G+ +    +F EM   G++P +
Sbjct: 292 AKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRI 351

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
             + AL+ G A+ G + +A      M    + PD   +  L+ A    G  + A  +L +
Sbjct: 352 KAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQ 411

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  E   V P+      ++ +  + G+  +  EV + +   N+K     Y + I+   + 
Sbjct: 412 M--EARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKF 469

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
              + A   YD M  +G+ PD V  + LID     G  + A E+ +E + +G      +Y
Sbjct: 470 NCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTY 529

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           + ++ +    + W +   L   M+S  L P V T   L+       +    ++ L  MKS
Sbjct: 530 NIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKS 589

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEK 460
            GL P+   Y+ L+ A  ++   E  +        DG+ P+L+    +I      RR  +
Sbjct: 590 AGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIE 649

Query: 461 ARTLNEHVLSFNSGRPQIENKWTSLALM-----------VYREAIVAGTIP 500
           A ++ +++   N  +P +    T +  +           VY E I++G  P
Sbjct: 650 AFSILQYMKE-NDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEMILSGCTP 699



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 160/362 (44%), Gaps = 41/362 (11%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MFEVFH 151
           T+N L+  CA + D E A  ++  +++ G ++D   Y+ +I +  ++ K+D   + +++ 
Sbjct: 211 TYNALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYE 270

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           E+ +  IE +      +I G AKAG   +A                + F +++ A G   
Sbjct: 271 EIESDKIELDGLLLNDIILGFAKAGDPNRA----------------LYFLSMVQASG--- 311

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
                             ++P   T  A++ A  N G+ + A  +++ + +  +K   + 
Sbjct: 312 ------------------LNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKA 353

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   +   ++ G  + A S+  +M K G+ PDE     L+D   + G+ E+A  +L++ +
Sbjct: 354 FNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQME 413

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            + +      +S ++ +  +   WQK  E+   MK+  +KP     N +I      + L 
Sbjct: 414 ARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLD 473

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLSQAKEDGVIPNLVMFKCI 450
             ME    M S G+ P+ +T++  L+ C RK    +    L  + +E G +P    +  +
Sbjct: 474 HAMETYDRMLSEGIEPDVVTWNT-LIDCHRKHGYHDRAAELFEEMQERGYLPCPTTYNIM 532

Query: 451 IG 452
           I 
Sbjct: 533 IN 534



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 153/332 (46%), Gaps = 10/332 (3%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           LY+ LI    +S K   ++E F       + P   TY ALI  CA+   + KA      M
Sbjct: 181 LYSILIHALGRSEK---LYEAFILSQKQTLTP--LTYNALIGACARNNDLEKALNLMSRM 235

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGALMKACAN 246
           R    + D + ++ +I +  ++  +D    +L ++  E+    ++ D + +  ++   A 
Sbjct: 236 RQDGFQSDFINYSLIIQSLTRTNKID--IPLLQKLYEEIESDKIELDGLLLNDIILGFAK 293

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           AG  +RA     M+    +      +   I+     G  E A +++++M + G+ P    
Sbjct: 294 AGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKA 353

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            +AL+      G ++ A  I+ E +  G+S    +Y  L+ A +N   W+ A  L + M+
Sbjct: 354 FNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQME 413

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +  ++P     + ++ +  D  +  KT EVL +MK+  + P+   Y++++    + + ++
Sbjct: 414 ARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKFNCLD 473

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 458
             +    +   +G+ P++V +  +I  C R++
Sbjct: 474 HAMETYDRMLSEGIEPDVVTWNTLID-CHRKH 504



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 153/378 (40%), Gaps = 38/378 (10%)

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           ++++ LI A G+S  +  AF +L++       + P  +T  AL+ ACA    +++A  + 
Sbjct: 180 LLYSILIHALGRSEKLYEAF-ILSQKQT----LTP--LTYNALIGACARNNDLEKALNLM 232

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
             + +   +     Y++ I   ++T   D      +Y+++    +  D + L+ +I    
Sbjct: 233 SRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFA 292

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            AG    A   L   +  G++    ++ +++ A  N    ++A  ++E MK   LKP + 
Sbjct: 293 KAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIK 352

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
             NAL+        L +   ++S+M+  GL P+  TY +L+ A       E    LL Q 
Sbjct: 353 AFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQM 412

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 495
           +   V PN  +F  I+     R E  +T                         V RE   
Sbjct: 413 EARNVQPNTFIFSRILASYRDRGEWQKTFE-----------------------VLREMKN 449

Query: 496 AGTIPT---VEVVSKVLGCLQ-LPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 551
           +   P      V+    G    L +  +  +R++   G+  D +  + L       G +D
Sbjct: 450 SNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSE-GIEPDVVTWNTLIDCHRKHGYHD 508

Query: 552 PRAFSLLEEAASFGIVPC 569
            RA  L EE    G +PC
Sbjct: 509 -RAAELFEEMQERGYLPC 525



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           GR ++ ID LE M+  GL     +Y+A   N    +   ++A   ++++ +    P+L  
Sbjct: 575 GRFNDAIDCLEAMKSAGLKPSATMYNA-LINAFAQRGLSEQAVNAYRVMISDGLRPSLLA 633

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
            N L++     +    AF +L+ ++E  +K D   YTTL+    +  K D +  V+ EM+
Sbjct: 634 LNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEMI 693

Query: 155 NAGIEPN 161
            +G  P+
Sbjct: 694 LSGCTPD 700


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 190/389 (48%), Gaps = 27/389 (6%)

Query: 70  VCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           VC + K +KE   F   V          ++  L+     + ++  A QVLR +    ++ 
Sbjct: 59  VCLNDK-VKETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQP 117

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           +  +Y+T+I +  K   V   F+++ +M+   I P+V TY  L+ GC   G++ +A G +
Sbjct: 118 NVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLF 177

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M  KN+KPD   FN L+    + G + +A +VLA M  +   VDPD IT  +LM    
Sbjct: 178 NQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQ--SVDPDVITYNSLMDGYF 235

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
              Q ++A  V+  + +  +  TP+V  Y++ IN   +T   + A ++  +M  K + P+
Sbjct: 236 LVKQENKATFVFNTMARRGV--TPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPN 293

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V  S+LID    +G++  A++++ E  N+G    +I+Y+SL+ A        KA+ L  
Sbjct: 294 TVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLT 353

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            +K   ++P + T   L+  LC   +L    EV               Y ILL+     D
Sbjct: 354 KIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEV---------------YQILLIKGYHLD 398

Query: 424 DV-EVGLMLLSQAKEDGVIPNLVMFKCII 451
            + +  L LLS+ +++G  PN V F+ +I
Sbjct: 399 SLFDKALSLLSKMEDNGCTPNPVTFEILI 427



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 160/385 (41%), Gaps = 45/385 (11%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---D 144
           P PT+  F  + +             +   ++  G++ D      L+      G+V   D
Sbjct: 4   PTPTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLND 63

Query: 145 AMFEVFH---EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            + E  H   +++  G + N  +YG LIDG  KAG+   A      +    V+P+ V+++
Sbjct: 64  KVKETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYS 123

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I +  +   V  AFD+ ++M   +  + PD IT   LM  C   G   R +E      
Sbjct: 124 TIIYSLCKDKLVIDAFDLYSQM--LLKRISPDVITYNTLMYGCLIVG---RLKE------ 172

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                                     A  +++ M  K + PD    + L+D     G+++
Sbjct: 173 --------------------------AVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMK 206

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +L     Q +   +I+Y+SLM      K   KA  ++  M    + P V + + +I
Sbjct: 207 KARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMI 266

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC    + + + +L +M S  + PNT+TYS L+    +   +     L+++    G  
Sbjct: 267 NGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQP 326

Query: 442 PNLVMFKCII-GMC-SRRYEKARTL 464
            +++ +  ++  +C + + +KA TL
Sbjct: 327 ADVITYNSLLDALCKNHQVDKAITL 351



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 27/320 (8%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAI 77
           +S  + +YN L+      GR+ E + L   M  K +      ++     +CK    +KA 
Sbjct: 150 ISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKAR 209

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                  K   +P + T+N LM      K    A  V   +   G+  D   Y+ +I   
Sbjct: 210 NVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGL 269

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K+  VD    +  EM +  + PN  TY +LIDG  K+G++  A+     M ++    D 
Sbjct: 270 CKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADV 329

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           + +N+L+ A  ++  VD+A  +L ++  +   + PD  T   L+      G++  A+EVY
Sbjct: 330 ITYNSLLDALCKNHQVDKAITLLTKIKDQ--GIQPDIYTYTILVDGLCKNGRLKDAQEVY 387

Query: 258 K--MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +  +I  Y++                   ++ A S+   M   G  P+ V    LI    
Sbjct: 388 QILLIKGYHLDSL----------------FDKALSLLSKMEDNGCTPNPVTFEILIRALF 431

Query: 316 HAGKVEAAFEILQEAKNQGI 335
                + A E+L+E   +G+
Sbjct: 432 ENDMNDKAVELLREMIARGL 451



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 118/285 (41%), Gaps = 26/285 (9%)

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG------KVEAAFEILQEAKNQGISVG 338
           +    S+   M  +G+  D V L+ L++   H G      KV+       +   +G  + 
Sbjct: 24  FHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKVKETLHFHDDVIAKGFQLN 83

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
            +SY +L+     A   + A+++  ++  + ++P V   + +I +LC    +    ++ S
Sbjct: 84  QVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYS 143

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR- 456
            M    + P+ ITY+ L+  C     ++  + L +Q     + P++  F  ++ G+C   
Sbjct: 144 QMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEG 203

Query: 457 RYEKAR---------TLNEHVLSFNSGRP-----QIENKWTSLALMVYREAIVAGTIPTV 502
             +KAR         +++  V+++NS        + ENK T     V+      G  P V
Sbjct: 204 EMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKAT----FVFNTMARRGVTPDV 259

Query: 503 EVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
              S ++  L      D    L++ +   + A       SLIDG 
Sbjct: 260 HSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGL 304


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 207/461 (44%), Gaps = 35/461 (7%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           G + N  +  S  + +Y R    G   E I +   M+  GL      Y+A      K   
Sbjct: 262 GGYGNTVYAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGM 318

Query: 76  AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
             K+  +FF  +      P   TFN L++VC+     E A  +   +    ++ D   Y 
Sbjct: 319 EFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           TL+    K G++D  FE+  +M    I PNV +Y  +IDG AKAG+  +A   +G MR  
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            +  DRV +N L++   + G  + A D+L EM A V  +  D +T  AL+      G+ D
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVG-IKKDVVTYNALLGGYGKQGKYD 496

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
             ++V+  + + ++      Y+  I+  S+ G ++ A  ++ +    G+  D V  SALI
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-------------- 357
           D     G V +A  ++ E   +GIS  +++Y+S++ A   +    +              
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSS 616

Query: 358 ----ALELYEHMKSIKLKPTVST-MNALITALCDG--DQLPKTMEVLSDMKSLGLCPNTI 410
               AL   E  + I+L   ++T  N   T  C+    +L   +EV   M  L + PN +
Sbjct: 617 SALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVV 676

Query: 411 TYSILLVACERKDDVEVGLMLLSQ-----AKEDGVIPNLVM 446
           T+S +L AC R +  E   MLL +      K  GV+  L+M
Sbjct: 677 TFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 162/331 (48%), Gaps = 9/331 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAY 185
           ++ LI+   +SG  +    VF+ M   G+ PN+ TY A+ID C K G    QVAK F   
Sbjct: 271 FSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE- 329

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M+   V+PDR+ FN+L+  C + G  + A ++  EM      ++ D  +   L+ A  
Sbjct: 330 --MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNR--RIEQDVFSYNTLLDAIC 385

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
             GQ+D A E+   +    I      Y+  I+  ++ G ++ A +++ +M   G+  D V
Sbjct: 386 KGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRV 445

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + L+      G+ E A +IL+E  + GI   +++Y++L+G       + +  +++  M
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           K   + P + T + LI     G    + ME+  + KS GL  + + YS L+ A  +   V
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLV 565

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
              + L+ +  ++G+ PN+V +  II    R
Sbjct: 566 GSAVSLIDEMTKEGISPNVVTYNSIIDAFGR 596



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 158/328 (48%), Gaps = 9/328 (2%)

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
           KL + +I+T  + GKV     +F      G    V+ + ALI    ++G   +A   +  
Sbjct: 234 KLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNS 293

Query: 188 MRSKNVKPDRVVFNALITACGQSG----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
           M+   ++P+ V +NA+I ACG+ G     V + FD   EM  + + V PD IT  +L+  
Sbjct: 294 MKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFD---EM--QRNGVQPDRITFNSLLAV 348

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
           C+  G  + AR ++  +    I+     Y   ++   + G  + A  +   M  K ++P+
Sbjct: 349 CSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPN 408

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V  S +ID    AG+ + A  +  E +  GI++  +SY++L+   +     ++AL++  
Sbjct: 409 VVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILR 468

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M S+ +K  V T NAL+       +  +  +V ++MK   + PN +TYS L+    +  
Sbjct: 469 EMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGG 528

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             +  + +  + K  G+  ++V++  +I
Sbjct: 529 LYKEAMEIFREFKSAGLRADVVLYSALI 556



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 193/442 (43%), Gaps = 61/442 (13%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEV 149
           T+  F+ L+S    S   E A  V   ++E GL+ +   Y  +I  C K G +   + + 
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   G++P+  T+ +L+  C++ G    A   +  M ++ ++ D   +N L+ A  +
Sbjct: 327 FDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICK 386

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D AF++LA+M   V  + P+ ++   ++   A AG+ D A  ++  +    I    
Sbjct: 387 GGQMDLAFEILAQM--PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   ++  ++ G  E A  +  +M   G+  D V  +AL+   G  GK +   ++  E
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K + +   +++YS+L+   S    +++A+E++   KS  L+  V   +ALI ALC    
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGL 564

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVA------CERKDDVEVG---------LMLLSQ 434
           +   + ++ +M   G+ PN +TY+ ++ A       +R  D   G         L  L++
Sbjct: 565 VGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTE 624

Query: 435 AKEDGVI-----------------------------------------PNLVMFKCIIGM 453
            + + VI                                         PN+V F  I+  
Sbjct: 625 TEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNA 684

Query: 454 CSR--RYEKARTLNEHVLSFNS 473
           CSR   +E A  L E +  F++
Sbjct: 685 CSRCNSFEDASMLLEELRLFDN 706


>gi|387219047|gb|AFJ69232.1| hypothetical protein NGATSA_2004410 [Nannochloropsis gaditana
           CCMP526]
 gi|422293010|gb|EKU20311.1| hypothetical protein NGA_2004410 [Nannochloropsis gaditana CCMP526]
 gi|422293947|gb|EKU21247.1| hypothetical protein NGA_2004420 [Nannochloropsis gaditana CCMP526]
          Length = 1057

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/472 (26%), Positives = 207/472 (43%), Gaps = 67/472 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY-HARFFNVCKSQKAIKEAFRFFK 85
           SYN  I    ++GR  E + +L  M+   + D +K   H    +  K +       R  +
Sbjct: 383 SYNTAIEACAKRGRFEEALAILRSMQ---VPDTEKAGGHVPLPSASKKRNGASHHRRHQR 439

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVD 144
           LVP P L T++  +  C  +   E A  +L  V+ A  ++ +   Y   I  CAKSG+ +
Sbjct: 440 LVPEPDLVTYHSAIKACGHAGQWEHALSLLAEVRAARWIELEPSTYNAAIAACAKSGRFN 499

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV------ 198
              ++  E  +A    NV TY + +  C+  G+   AF    +M++  V+PD V      
Sbjct: 500 EALDLLKECGDAS---NVVTYNSAMQACSSGGRPDLAFQLLQVMKANGVEPDVVSYTTVM 556

Query: 199 -------------------------VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
                                     +NAL+ AC + G    +  +L EM+ +   V P+
Sbjct: 557 QRSSVDVATSVLNRMRAAGVSVGVMTYNALLNACAREGDWRTSLAMLEEMDHQS--VAPN 614

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACS 290
            +T    M+AC   GQ   A EV   +++  ++G P   +    AI+ C++  DW  A S
Sbjct: 615 VVTYTLAMEACGRGGQWQAALEV---LNEMTVRGVPLDSKACQTAIDVCAKVQDWNKALS 671

Query: 291 VYDDMTKKGV--IPD---------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
           +  D++ +G   I D         E++  A+  F G AG+ E    +L+        V  
Sbjct: 672 LLRDVSAQGRDGIGDQGSGKGGTKELYEKAMAAF-GRAGEWEKVLWLLEGMDRPDQKVTN 730

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++    M AC+ A  W++A+ L ++M S  + P   + N  I A        K +++L +
Sbjct: 731 LA----MRACAQAGRWEEAVGLLQNMTSKGIAPDQWSYNTAIHACAQAGNAEKALKLLKE 786

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           M   G+ P+ ++Y+  + AC    DVE  L LL +  + GV PN   F  I+
Sbjct: 787 MGQEGVVPDVVSYTTAMDACASVGDVETSLRLLEEMVKKGVHPNHRSFNAIM 838



 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 191/438 (43%), Gaps = 48/438 (10%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNM 97
           G+    + LL ++     ++++   +      C       EA    K   + + + T+N 
Sbjct: 460 GQWEHALSLLAEVRAARWIELEPSTYNAAIAACAKSGRFNEALDLLKECGDASNVVTYNS 519

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
            M  C+S    + AFQ+L++++  G++ D   YTT++    +   VD    V + M  AG
Sbjct: 520 AMQACSSGGRPDLAFQLLQVMKANGVEPDVVSYTTVM----QRSSVDVATSVLNRMRAAG 575

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           +   V TY AL++ CA+ G    +      M  ++V P+ V +   + ACG+ G    A 
Sbjct: 576 VSVGVMTYNALLNACAREGDWRTSLAMLEEMDHQSVAPNVVTYTLAMEACGRGGQWQAAL 635

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA------------------------ 253
           +VL EM     P+D         +  CA     ++A                        
Sbjct: 636 EVLNEMTVRGVPLDSKACQTA--IDVCAKVQDWNKALSLLRDVSAQGRDGIGDQGSGKGG 693

Query: 254 -REVY-KMIHKYNIKGTPE---------------VYTIAINCCSQTGDWEFACSVYDDMT 296
            +E+Y K +  +   G  E               V  +A+  C+Q G WE A  +  +MT
Sbjct: 694 TKELYEKAMAAFGRAGEWEKVLWLLEGMDRPDQKVTNLAMRACAQAGRWEEAVGLLQNMT 753

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            KG+ PD+   +  I     AG  E A ++L+E   +G+   ++SY++ M AC++  + +
Sbjct: 754 SKGIAPDQWSYNTAIHACAQAGNAEKALKLLKEMGQEGVVPDVVSYTTAMDACASVGDVE 813

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            +L L E M    + P   + NA+++A  +  Q  + + VL  M   GL P+  +Y++ +
Sbjct: 814 TSLRLLEEMVKKGVHPNHRSFNAIMSAHGNAGQATEAIAVLGLMTEHGLTPDVKSYTLAM 873

Query: 417 VACERKDDVEVGLMLLSQ 434
             C R+   +V L ++ +
Sbjct: 874 DICLRQGLWQVALKIVER 891



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 174/435 (40%), Gaps = 68/435 (15%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
             +C  Q+   EA R  + +      P L  +  +M  CA +   E A  ++  ++EAG+
Sbjct: 215 IQICARQERWFEAVRLLRDMRTRGAPPDLVAYTAVMDCCAKAGQWEAALTLIPEMKEAGV 274

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
           + D   Y T I  CAK G+     E    M     EPN+ +Y + +D CAK G+  +A G
Sbjct: 275 RPDRITYNTAIDACAKGGQWQRALEFLRGME----EPNLISYNSALDSCAKTGRWKEAVG 330

Query: 184 AYGIMRS-------------------------------------KNVKPDRVVFNALITA 206
               MR                                       +++P+ + +N  I A
Sbjct: 331 LLEEMRQAGRRKDGRGSTVSDQTQEVGANQGNTTNTIPGNRGSKPSIRPNIISYNTAIEA 390

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           C + G  + A  +L  M          H+ + +  K    A             H+ + +
Sbjct: 391 CAKRGRFEEALAILRSMQVPDTEKAGGHVPLPSASKKRNGASH-----------HRRHQR 439

Query: 267 GTPE----VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-VFLSALIDFAGHAGKVE 321
             PE     Y  AI  C   G WE A S+  ++     I  E    +A I     +G+  
Sbjct: 440 LVPEPDLVTYHSAIKACGHAGQWEHALSLLAEVRAARWIELEPSTYNAAIAACAKSGRFN 499

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A ++L+E    G +  +++Y+S M ACS+      A +L + MK+  ++P V +     
Sbjct: 500 EALDLLKEC---GDASNVVTYNSAMQACSSGGRPDLAFQLLQVMKANGVEPDVVS----Y 552

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           T +     +     VL+ M++ G+    +TY+ LL AC R+ D    L +L +     V 
Sbjct: 553 TTVMQRSSVDVATSVLNRMRAAGVSVGVMTYNALLNACAREGDWRTSLAMLEEMDHQSVA 612

Query: 442 PNLVMFKCIIGMCSR 456
           PN+V +   +  C R
Sbjct: 613 PNVVTYTLAMEACGR 627



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 182/418 (43%), Gaps = 29/418 (6%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A+ V   + SY  ++++  +     +L  M   G+      Y+A   N C  +   + + 
Sbjct: 542 ANGVEPDVVSYTTVMQRSSVDVATSVLNRMRAAGVSVGVMTYNA-LLNACAREGDWRTSL 600

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              + + +    P + T+ + M  C      + A +VL  +   G+  D K   T I  C
Sbjct: 601 AMLEEMDHQSVAPNVVTYTLAMEACGRGGQWQAALEVLNEMTVRGVPLDSKACQTAIDVC 660

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ---VAKAFGAYG-------- 186
           AK    +    +  ++   G +      G    G  K G      KA  A+G        
Sbjct: 661 AKVQDWNKALSLLRDVSAQGRD------GIGDQGSGKGGTKELYEKAMAAFGRAGEWEKV 714

Query: 187 -IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             +     +PD+ V N  + AC Q+G  + A  +L  M ++   + PD  +    + ACA
Sbjct: 715 LWLLEGMDRPDQKVTNLAMRACAQAGRWEEAVGLLQNMTSK--GIAPDQWSYNTAIHACA 772

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
            AG  ++A ++ K + +  +   P+V  YT A++ C+  GD E +  + ++M KKGV P+
Sbjct: 773 QAGNAEKALKLLKEMGQEGV--VPDVVSYTTAMDACASVGDVETSLRLLEEMVKKGVHPN 830

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
               +A++   G+AG+   A  +L      G++  + SY+  M  C     WQ AL++ E
Sbjct: 831 HRSFNAIMSAHGNAGQATEAIAVLGLMTEHGLTPDVKSYTLAMDICLRQGLWQVALKIVE 890

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            M + +++    +    I A   G+Q    +  L +M   G  P+  +Y++++ AC R
Sbjct: 891 RMHATRVRFDAISYGKAIHAAHLGEQWEVAVGFLDEMVESGWLPSHKSYTLVVEACRR 948



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 184/439 (41%), Gaps = 49/439 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           + G+    + L+ +M+  G+   D++ +    + C      + A  F + +  P L ++N
Sbjct: 255 KAGQWEAALTLIPEMKEAGVRP-DRITYNTAIDACAKGGQWQRALEFLRGMEEPNLISYN 313

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEM 153
             +  CA +   + A  +L  +++AG + D +  T    T    A  G         +  
Sbjct: 314 SALDSCAKTGRWKEAVGLLEEMRQAGRRKDGRGSTVSDQTQEVGANQGNTTNTIP-GNRG 372

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-------------------- 193
               I PN+ +Y   I+ CAK G+  +A     I+RS  V                    
Sbjct: 373 SKPSIRPNIISYNTAIEACAKRGRFEEAL---AILRSMQVPDTEKAGGHVPLPSASKKRN 429

Query: 194 -------------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
                        +PD V +++ I ACG +G  + A  +LAE+ A    ++ +  T  A 
Sbjct: 430 GASHHRRHQRLVPEPDLVTYHSAIKACGHAGQWEHALSLLAEVRA-ARWIELEPSTYNAA 488

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           + ACA +G+ + A ++ K     +   T   Y  A+  CS  G  + A  +   M   GV
Sbjct: 489 IAACAKSGRFNEALDLLKECGDASNVVT---YNSAMQACSSGGRPDLAFQLLQVMKANGV 545

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            PD V  + ++  +     V+ A  +L   +  G+SVG+++Y++L+ AC+   +W+ +L 
Sbjct: 546 EPDVVSYTTVMQRS----SVDVATSVLNRMRAAGVSVGVMTYNALLNACAREGDWRTSLA 601

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           + E M    + P V T    + A   G Q    +EVL++M   G+  ++      +  C 
Sbjct: 602 MLEEMDHQSVAPNVVTYTLAMEACGRGGQWQAALEVLNEMTVRGVPLDSKACQTAIDVCA 661

Query: 421 RKDDVEVGLMLLSQAKEDG 439
           +  D    L LL      G
Sbjct: 662 KVQDWNKALSLLRDVSAQG 680



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 6/245 (2%)

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
           G ++ +  + E   + D K+    +  CA++G+ +    +   M + GI P+  +Y   I
Sbjct: 709 GEWEKVLWLLEGMDRPDQKVTNLAMRACAQAGRWEEAVGLLQNMTSKGIAPDQWSYNTAI 768

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
             CA+AG   KA      M  + V PD V +   + AC   G V+ +  +L EM  +   
Sbjct: 769 HACAQAGNAEKALKLLKEMGQEGVVPDVVSYTTAMDACASVGDVETSLRLLEEMVKK--G 826

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEF 287
           V P+H +  A+M A  NAGQ   A  V  ++ ++ +  TP+V  YT+A++ C + G W+ 
Sbjct: 827 VHPNHRSFNAIMSAHGNAGQATEAIAVLGLMTEHGL--TPDVKSYTLAMDICLRQGLWQV 884

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  + + M    V  D +     I  A    + E A   L E    G      SY+ ++ 
Sbjct: 885 ALKIVERMHATRVRFDAISYGKAIHAAHLGEQWEVAVGFLDEMVESGWLPSHKSYTLVVE 944

Query: 348 ACSNA 352
           AC  A
Sbjct: 945 ACRRA 949



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 126/266 (47%), Gaps = 21/266 (7%)

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           A+++   + G + +A  +L+ + A      P  + +  L+ AC NA  +  A  V KM H
Sbjct: 150 AIVSKLAKEGYLKQAVKLLSNLKA------PSPLLVRTLLMACVNAESLPLALAVVKMPH 203

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              +  + + YT+ I  C++   W  A  +  DM  +G  PD V  +A++D    AG+ E
Sbjct: 204 ---VHPSVQQYTLVIQICARQERWFEAVRLLRDMRTRGAPPDLVAYTAVMDCCAKAGQWE 260

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           AA  ++ E K  G+    I+Y++ + AC+    WQ+ALE    M+    +P + + N+ +
Sbjct: 261 AALTLIPEMKEAGVRPDRITYNTAIDACAKGGQWQRALEFLRGME----EPNLISYNSAL 316

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERKDDVEVGLMLLSQAKE 437
            +     +  + + +L +M+  G   +    T++     V   + +      +  ++  +
Sbjct: 317 DSCAKTGRWKEAVGLLEEMRQAGRRKDGRGSTVSDQTQEVGANQGNTTNT--IPGNRGSK 374

Query: 438 DGVIPNLVMFKCIIGMCSR--RYEKA 461
             + PN++ +   I  C++  R+E+A
Sbjct: 375 PSIRPNIISYNTAIEACAKRGRFEEA 400



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 9/189 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           SYN  I    + G   + + LL++M ++G++  D V +    + C S   ++ + R    
Sbjct: 763 SYNTAIHACAQAGNAEKALKLLKEMGQEGVVP-DVVSYTTAMDACASVGDVETSLRLLEE 821

Query: 85  --KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             K   +P   +FN +MS   ++  +  A  VL L+ E GL  D K YT  +  C + G 
Sbjct: 822 MVKKGVHPNHRSFNAIMSAHGNAGQATEAIAVLGLMTEHGLTPDVKSYTLAMDICLRQGL 881

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                ++   M    +  +  +YG  I       Q   A G    M      P    +  
Sbjct: 882 WQVALKIVERMHATRVRFDAISYGKAIHAAHLGEQWEVAVGFLDEMVESGWLPSHKSYTL 941

Query: 203 LITACGQSG 211
           ++ AC ++G
Sbjct: 942 VVEACRRAG 950



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 72/137 (52%), Gaps = 10/137 (7%)

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +L+ AC NA++   AL +   +K   + P+V     +I      ++  + + +L DM++ 
Sbjct: 181 TLLMACVNAESLPLALAV---VKMPHVHPSVQQYTLVIQICARQERWFEAVRLLRDMRTR 237

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 461
           G  P+ + Y+ ++  C +    E  L L+ + KE GV P+ + +   I  C++  ++++A
Sbjct: 238 GAPPDLVAYTAVMDCCAKAGQWEAALTLIPEMKEAGVRPDRITYNTAIDACAKGGQWQRA 297

Query: 462 ----RTLNE-HVLSFNS 473
               R + E +++S+NS
Sbjct: 298 LEFLRGMEEPNLISYNS 314


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 196/418 (46%), Gaps = 7/418 (1%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPNPTLS 93
            +I+ G+I +   + ED   +   ++D+ +         ++   ++A  F  +LV      
Sbjct: 693  VIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICK 752

Query: 94   TFNMLMSV----CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
              ++L+ +    C   K S      ++  +E G+K   K+Y  LI    +   V+  + +
Sbjct: 753  DDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNL 812

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            F EM +AG  P+  TY +LID   K+G++ + F  Y  M ++  KP+ + +N +I+   +
Sbjct: 813  FEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVK 872

Query: 210  SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            S  +D+A D+    N       P   T G L+     +G++D A E++  +  Y  +   
Sbjct: 873  SNRLDKAMDLY--YNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNS 930

Query: 270  EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             +Y I +N   + G  + AC  +  M K+G+ PD    + L+D    AG+V+ A    ++
Sbjct: 931  AIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEK 990

Query: 330  AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             K  G+   +++Y+ ++     ++  ++AL L+  M++  + P + T N+LI  L     
Sbjct: 991  LKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGM 1050

Query: 390  LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            + +  ++  +++ +GL PN  TY+ L+       + E+   +  +    G  PN   F
Sbjct: 1051 IEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTF 1108



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 111/501 (22%), Positives = 209/501 (41%), Gaps = 53/501 (10%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
            +V   L  +  L  +G + +    LE M   G +     Y+     + +S    KEA  
Sbjct: 157 RNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQS-GFCKEALE 215

Query: 83  FFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
            ++ + +    P+L TF+ LM      ++ +    +L  ++  GL+ +   YT  I    
Sbjct: 216 VYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLG 275

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           + GK+D  + +   M + G  P+V TY  LID    A ++  A   +  M+S + KPD+V
Sbjct: 276 RDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKV 335

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +  L+      G +D+   +  EM A+ +   PD +T   L+ A   AG+++ A ++  
Sbjct: 336 TYVTLLDKFSDCGHLDKVEKIWTEMEADGYA--PDVVTFTILVNALCKAGRINEAFDLLD 393

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF---AG 315
            + K  +      Y   I+   +    + A  ++ +M   GV P       LID+   +G
Sbjct: 394 TMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSG 453

Query: 316 HAGKVEAAFE--------------------------------ILQEAKNQGISVGIISYS 343
           H GK    FE                                +  E K+ G++   ++Y+
Sbjct: 454 HPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYN 513

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            +M   S      +A++L   M  ++ +P V  +N+LI  L    ++ +  ++   M+ +
Sbjct: 514 MMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEM 573

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI---------IGMC 454
            L P  +TY+ILL    ++  ++  + L       G  PN + F  +         + + 
Sbjct: 574 NLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLA 633

Query: 455 SRRYEKARTLN--EHVLSFNS 473
            + + K  T+N    VL+FN+
Sbjct: 634 LKMFYKMTTMNCRPDVLTFNT 654



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 196/420 (46%), Gaps = 9/420 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVY-HARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           ++  I   + LLE+ME  GL     +Y +     V      I EA+R  K + +    P 
Sbjct: 241 KRRNIKTVMGLLEEMESMGL--RPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPD 298

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+ +L+    +++  + A  +   ++ +  K D   Y TL+   +  G +D + +++ 
Sbjct: 299 VVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWT 358

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   G  P+V T+  L++   KAG++ +AF     MR + V P+   +N LI+   ++ 
Sbjct: 359 EMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRAN 418

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +D A D+ + M  E   V+P   T   L+     +G   +A E ++ +    I      
Sbjct: 419 RLDDALDLFSNM--ESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVA 476

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
              ++   ++ G    A ++++++   G+ PD V  + ++      G+V+ A ++L E  
Sbjct: 477 CNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMS 536

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
                  +I  +SL+     A   ++A +++  M+ + L PTV T N L+  L    Q+ 
Sbjct: 537 KVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQ 596

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           K +++   M   G  PNTIT++ LL    + D+V++ L +  +       P+++ F  II
Sbjct: 597 KAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTII 656



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 186/406 (45%), Gaps = 5/406 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L R G+I E   +++ M+  G       Y      +C ++K       F K+  +   P 
Sbjct: 274 LGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPD 333

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+  L+   +     +   ++   ++  G   D   +T L+    K+G+++  F++  
Sbjct: 334 KVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLD 393

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G+ PN+HTY  LI G  +A ++  A   +  M S  V+P    +  LI   G+SG
Sbjct: 394 TMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSG 453

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
              +A +   +M A    + P+ +   A + + A  G++  A+ ++  +    +      
Sbjct: 454 HPGKALETFEKMKAR--GIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVT 511

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + + C S+ G  + A  +  +M+K    PD + +++LID    AG+VE A+++    +
Sbjct: 512 YNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCRME 571

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
              ++  +++Y+ L+         QKA++L+E M      P   T N L+  LC  D++ 
Sbjct: 572 EMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVD 631

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             +++   M ++   P+ +T++ ++    +++ ++  + L  Q K+
Sbjct: 632 LALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKK 677



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 115/529 (21%), Positives = 220/529 (41%), Gaps = 65/529 (12%)

Query: 31   SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
            +YN +++     G++ E I LL +M  K   + D +      +       ++EA++ F  
Sbjct: 511  TYNMMMKCYSKVGQVDEAIKLLSEMS-KVQCEPDVIVINSLIDTLYKAGRVEEAWQMFCR 569

Query: 85   --KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
              ++   PT+ T+N+L++        + A Q+   +   G   +   + TL+    K+ +
Sbjct: 570  MEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDE 629

Query: 143  VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            VD   ++F++M      P+V T+  +I G  K  Q+  A   +  M+ K ++PD V    
Sbjct: 630  VDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMK-KLLRPDHVTLCT 688

Query: 203  LITACGQSGAVDRAFDVLAEMNAEV----------------------------------H 228
            L+    +SG ++ AF +  +   +V                                   
Sbjct: 689  LLPGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCR 748

Query: 229  PVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             +  D   +  ++K      +   AR V+ K   +  +K T +VY + I+   +  + E 
Sbjct: 749  AICKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEV 808

Query: 288  ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
            A +++++M   G  PD    ++LID  G +GK+   F++  E   +G     I+Y+ ++ 
Sbjct: 809  AWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVIS 868

Query: 348  ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                +    KA++LY ++ S    PT  T   LI  L    +L    E+   M   G  P
Sbjct: 869  NLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRP 928

Query: 408  NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCS---RRY 458
            N+  Y+IL+    +   V+       +  ++G+ P+L  +       CI G        +
Sbjct: 929  NSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYF 988

Query: 459  EKART--LNEHVLSFN-----SGRPQIENKWTSLALMVYREAIVAGTIP 500
            EK +   L+  ++++N      GR Q     T  AL ++ E    G +P
Sbjct: 989  EKLKQAGLDPDLVAYNLMINGLGRSQ----RTEEALSLFHEMQNRGIVP 1033



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 162/380 (42%), Gaps = 35/380 (9%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           YA DV       N L + GRI+E  DLL+ M ++G+L                       
Sbjct: 365 YAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVL----------------------- 401

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P L T+N L+S    +   + A  +   ++  G++     Y  LI    KS
Sbjct: 402 ---------PNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKS 452

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G      E F +M   GI PN+    A +   A+ G++ +A   +  ++S  + PD V +
Sbjct: 453 GHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTY 512

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N ++    + G VD A  +L+EM+      +PD I I +L+     AG+V+ A +++  +
Sbjct: 513 NMMMKCYSKVGQVDEAIKLLSEMSKV--QCEPDVIVINSLIDTLYKAGRVEEAWQMFCRM 570

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            + N+  T   Y I +    + G  + A  +++ M   G  P+ +  + L+D      +V
Sbjct: 571 EEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEV 630

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A ++  +         ++++++++         + A+ L+  MK + L+P   T+  L
Sbjct: 631 DLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTL 689

Query: 381 ITALCDGDQLPKTMEVLSDM 400
           +  +    Q+     +  D 
Sbjct: 690 LPGVIKSGQIEDAFRITEDF 709



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 150/350 (42%), Gaps = 41/350 (11%)

Query: 70   VCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +CK +K       F K        PTL  +N+L+       + E A+ +   ++ AG   
Sbjct: 764  LCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAP 823

Query: 126  DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY-------------------- 165
            D   Y +LI    KSGK++ +F+++ EM+  G +PN  TY                    
Sbjct: 824  DTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLY 883

Query: 166  ---------------GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
                           G LIDG  K+G++  A   +  M     +P+  ++N L+   G+ 
Sbjct: 884  YNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKL 943

Query: 211  GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
            G VD A +    M  E   + PD  +   L+     AG+VD A   ++ + +  +     
Sbjct: 944  GHVDTACEFFKRMVKE--GIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLV 1001

Query: 271  VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
             Y + IN   ++   E A S++ +M  +G++PD    ++LI   G  G +E A +I +E 
Sbjct: 1002 AYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEEL 1061

Query: 331  KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            +  G+   + +Y++L+   + + N + A  +Y+ M      P   T   L
Sbjct: 1062 QFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 110/493 (22%), Positives = 200/493 (40%), Gaps = 59/493 (11%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-----FFKLVPN 89
             I+Q +I   I L   M++  LL  D V              I++AFR     F+++  N
Sbjct: 659  FIKQNQIKNAIWLFHQMKK--LLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFFYQVGSN 716

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQV-LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
               S +  +M    +   +E A     RLV  A  K D  L   +   C K  K      
Sbjct: 717  IDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLC-KHKKTSVARN 775

Query: 149  VFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            VF +     G++P +  Y  LIDG  +   V  A+  +  M+S    PD   +N+LI A 
Sbjct: 776  VFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAH 835

Query: 208  GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            G+SG ++  FD+  EM        P+ IT   ++     + ++D+A ++Y  +   +   
Sbjct: 836  GKSGKINELFDLYDEM--LTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSP 893

Query: 268  TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
            TP  +   I+   ++G  + A  ++D M   G  P+    + L++  G  G V+ A E  
Sbjct: 894  TPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFF 953

Query: 328  QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            +    +GI                                   +P + +   L+  LC  
Sbjct: 954  KRMVKEGI-----------------------------------RPDLKSYTILVDILCIA 978

Query: 388  DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             ++   +     +K  GL P+ + Y++++    R    E  L L  + +  G++P+L  +
Sbjct: 979  GRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTY 1038

Query: 448  KC------IIGM---CSRRYEKAR--TLNEHVLSFNSG-RPQIENKWTSLALMVYREAIV 495
                    I+GM     + YE+ +   L  +V ++N+  R    +  + LA  +Y++ +V
Sbjct: 1039 NSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMV 1098

Query: 496  AGTIPTVEVVSKV 508
             G  P     +++
Sbjct: 1099 GGCDPNTGTFAQL 1111



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 165/375 (44%), Gaps = 13/375 (3%)

Query: 79  EAFRFFKLV---PN--PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            A  +FK V   PN   T  T N ++ +    +  E    V  L+Q   ++ +   Y  +
Sbjct: 106 HALFYFKSVGELPNVVHTTETCNHMLEILRVHRRVEDMAFVFDLMQRQIIRRNVDTYLII 165

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
             +    G +        +M  AG   N ++Y  LI    ++G   +A   Y  M S+ +
Sbjct: 166 FKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGL 225

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KP    F+AL+ A G+   +     +L EM  E   + P+  T    ++     G++D  
Sbjct: 226 KPSLKTFSALMVASGKRRNIKTVMGLLEEM--ESMGLRPNIYTYTICIRVLGRDGKID-- 281

Query: 254 REVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
            E Y+++ + +  G  P+V  YT+ I+        + A  ++  M      PD+V    L
Sbjct: 282 -EAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTL 340

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           +D     G ++   +I  E +  G +  +++++ L+ A   A    +A +L + M+   +
Sbjct: 341 LDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGV 400

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P + T N LI+ L   ++L   +++ S+M+SLG+ P   TY +L+    +       L 
Sbjct: 401 LPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALE 460

Query: 431 LLSQAKEDGVIPNLV 445
              + K  G+ PN+V
Sbjct: 461 TFEKMKARGIAPNIV 475



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 9/180 (5%)

Query: 32   YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
            YN L+    + G +    +  + M ++G+    K Y      +C + + + +A  +F+ +
Sbjct: 933  YNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGR-VDDALHYFEKL 991

Query: 88   P----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 +P L  +N++++    S+ +E A  +   +Q  G+  D   Y +LI      G +
Sbjct: 992  KQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMI 1051

Query: 144  DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
            +   +++ E+   G++PNV TY ALI G   +G    A+G Y  M      P+   F  L
Sbjct: 1052 EEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 215/449 (47%), Gaps = 16/449 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-L 86
           YN L+    R G++     +L+ M+  G+      Y       C++ K ++EAF  ++ +
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRT-KGVEEAFDLYEGM 265

Query: 87  VPNPTL---STFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           V N  L    T + L++ +C   + SE A+ + R + + G   +   Y TLI + AK+G+
Sbjct: 266 VRNGVLLDVVTLSALVAGLCRDGRFSE-AYALFREMDKVGAAPNHVTYCTLIDSLAKAGR 324

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
              +  +  EMV+ G+  ++ TY AL+D   K G+  +         S N+ P+ V +  
Sbjct: 325 GKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTV 384

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI A  ++  VD A  VL EM  E   + P+ +T  +++      G +D+A E  +M+ +
Sbjct: 385 LIDALCKAHNVDEAEQVLLEM--EEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKE 442

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I      Y   I+   +    + A  VY DM  +GV  ++  + +L++     GK+E 
Sbjct: 443 RGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEE 502

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  + ++A   G+S+  ++Y++L+     A +   A +  + +    + P     N  I 
Sbjct: 503 AMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFIN 562

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC   +  +    L++M+++GL P+  TY+ ++V+  RK +    L LL + K   + P
Sbjct: 563 CLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKP 622

Query: 443 NLVMFKCIIG--MCSRRYEKAR-TLNEHV 468
           NL+ +  ++     +   EKA+  LNE V
Sbjct: 623 NLITYNTLVAGLFGTGAVEKAKYLLNEMV 651



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 195/461 (42%), Gaps = 46/461 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFF---KL 86
           + L + GR  E + LL +M  +G++ MD V +    +    Q     +K+  RF     L
Sbjct: 317 DSLAKAGRGKELLSLLGEMVSRGVV-MDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL 375

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            PN    T+ +L+     + + + A QVL  ++E  +  +   ++++I    K G +D  
Sbjct: 376 SPNGV--TYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E    M   GI PNV TYG LIDG  K      A   Y  M  + VK ++ + ++L+  
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG 493

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             Q+G ++ A  +  +  A    +  DH+    L+     AG +  A +  + +   N+ 
Sbjct: 494 LRQNGKIEEAMALFKD--ASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNML 551

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
               VY + INC    G ++ A S   +M   G+ PD+   + +I      G+   A ++
Sbjct: 552 PDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611

Query: 327 LQEAKNQGISVGIISYSSLMG-----------------------------------ACSN 351
           L E K   I   +I+Y++L+                                    ACS 
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQ 671

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           ++     L+++E M +  L   ++  N L+  LC      K   VL +M   G+ P+TIT
Sbjct: 672 SRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTIT 731

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           ++ L++   +   ++      +Q     + PN+  F  ++G
Sbjct: 732 FNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 167/394 (42%), Gaps = 19/394 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G+I E + L +D    GL  +D V +    +       +  AF+F + + +   
Sbjct: 492 NGLRQNGKIEEAMALFKDASGSGL-SLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNM 550

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P    +N+ ++ +C   K  E A   L  ++  GLK D   Y T+I +  + G+     
Sbjct: 551 LPDAVVYNVFINCLCMLGKFKE-AKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++ HEM  + I+PN+ TY  L+ G    G V KA      M S    P  +    ++ AC
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQAC 669

Query: 208 GQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            QS  +D   D+   M NA +H    D      L++     G   +A  V + +    I 
Sbjct: 670 SQSRRLDVILDIHEWMMNAGLHA---DITVYNTLLQVLCYHGMTRKATVVLEEMLGSGI- 725

Query: 267 GTPEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             P+  T    I  +C S   D  FA   Y  M  + + P+    + L+      G++  
Sbjct: 726 -APDTITFNALILGHCKSSHLDNAFA--TYAQMLHQNISPNIATFNTLLGGLESVGRIGE 782

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  +L E +  G+    ++Y  L        N  +A+ LY  M      P VST NALI+
Sbjct: 783 AGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALIS 842

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
                  + +  E+  DM+  G+ P + TY IL+
Sbjct: 843 DFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILV 876



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 150/343 (43%), Gaps = 2/343 (0%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E A  + +    +GL  D   YTTLI    K+G +   F+   E+++  + P+   Y   
Sbjct: 501 EEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVF 560

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I+     G+  +A      MR+  +KPD+  +N +I +  + G   +A  +L EM  ++ 
Sbjct: 561 INCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEM--KMS 618

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + P+ IT   L+      G V++A+ +   +       +   +   +  CSQ+   +  
Sbjct: 619 SIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVI 678

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             +++ M   G+  D    + L+    + G    A  +L+E    GI+   I++++L+  
Sbjct: 679 LDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILG 738

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              + +   A   Y  M    + P ++T N L+  L    ++ +   VL +M+  GL PN
Sbjct: 739 HCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPN 798

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +TY IL     ++ +    + L  +    G +P +  +  +I
Sbjct: 799 NLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 137/322 (42%), Gaps = 37/322 (11%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N L++      D+  A  V   +   GL  D   Y TL+    ++G+VDA   V   M 
Sbjct: 172 WNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMK 231

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            AG++PNV TY   I    +   V +AF  Y  M    V  D V  +AL+    + G   
Sbjct: 232 EAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFS 291

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A+ +  EM+       P+H+T   L+ + A AG   R +E+                  
Sbjct: 292 EAYALFREMDKV--GAAPNHVTYCTLIDSLAKAG---RGKEL------------------ 328

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
                          S+  +M  +GV+ D V  +AL+D+ G  GK +   + L+ A +  
Sbjct: 329 --------------LSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDN 374

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +S   ++Y+ L+ A   A N  +A ++   M+   + P V T +++I        L K  
Sbjct: 375 LSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKAT 434

Query: 395 EVLSDMKSLGLCPNTITYSILL 416
           E    MK  G+ PN +TY  L+
Sbjct: 435 EYKRMMKERGINPNVVTYGTLI 456



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 190/439 (43%), Gaps = 27/439 (6%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITAC 207
           V  EM   G+  +  T   L+ G  + GQV  A  A    R   +   D + +N LI   
Sbjct: 122 VLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAA--AALADRGGGIHALDVIGWNTLIAGY 179

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G    A  V   M A+  P+D   +    L+     AGQVD AR V  M+ +  +  
Sbjct: 180 CRVGDTPAALSVADRMTAQGLPMDV--VGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDP 237

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  I    +T   E A  +Y+ M + GV+ D V LSAL+      G+   A+ + 
Sbjct: 238 NVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALF 297

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E    G +   ++Y +L+ + + A   ++ L L   M S  +   + T  AL+  L   
Sbjct: 298 REMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQ 357

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +  +  + L    S  L PN +TY++L+ A  +  +V+    +L + +E  + PN+V F
Sbjct: 358 GKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTF 417

Query: 448 KCII-GMCSR----------RYEKARTLNEHVLSFNS---GRPQIENKWTSLALMVYREA 493
             +I G   R          R  K R +N +V+++ +   G  + + +    AL VY + 
Sbjct: 418 SSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQ--DAALEVYHDM 475

Query: 494 IVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENLGVSADALKRSNLCSLIDG-FGEY 550
           +  G      +V  ++  L+   N  I E   L ++   S  +L   N  +LIDG F   
Sbjct: 476 LCEGVKVNKFIVDSLVNGLR--QNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAG 533

Query: 551 D-PRAFSLLEEAASFGIVP 568
           D P AF   +E     ++P
Sbjct: 534 DMPTAFKFGQELMDRNMLP 552



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 132/298 (44%), Gaps = 19/298 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    R+G  ++ + LL +M+   +      Y+     +  +    K  +   ++
Sbjct: 591 TYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEM 650

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V    +P+  T   ++  C+ S+  +    +   +  AGL AD  +Y TL+      G  
Sbjct: 651 VSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMT 710

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                V  EM+ +GI P+  T+ ALI G  K+  +  AF  Y  M  +N+ P+   FN L
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTL 770

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQVDRAREVYKMIHK 262
           +      G +  A  VL EM  E   ++P+++T   L       + +V+  R   +M+ K
Sbjct: 771 LGGLESVGRIGEAGTVLIEM--EKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGK 828

Query: 263 YNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFA 314
             +   P+V  Y   I+  ++ G    A  ++ DM K+GV P     ++ +S   D A
Sbjct: 829 GFV---PKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWYDLA 883



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 6/196 (3%)

Query: 273 TIAIN-CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           T+A N   +   D   A +V  +M K+GV  D V ++ L+      G+V+AA  +    +
Sbjct: 103 TVAYNILLAALSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD--R 160

Query: 332 NQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             GI ++ +I +++L+       +   AL + + M +  L   V   N L+   C   Q+
Sbjct: 161 GGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQV 220

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                VL  MK  G+ PN  TY+  +V   R   VE    L      +GV+ ++V    +
Sbjct: 221 DAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSAL 280

Query: 451 I-GMCSR-RYEKARTL 464
           + G+C   R+ +A  L
Sbjct: 281 VAGLCRDGRFSEAYAL 296


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 178/402 (44%), Gaps = 37/402 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P++ T++ LM       D+     +L  ++  GL+ +   YT  I    ++ ++D  + +
Sbjct: 233 PSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGI 292

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM + G  P+V TY  LID    AG++ KA   Y  MR+ +  PDRV +  L+   G+
Sbjct: 293 FKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGK 352

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA---------REVYKMI 260
            G ++       EM  EV    PD +T   L++A   +G VDRA         + ++  +
Sbjct: 353 VGDLETVKRFWNEM--EVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNL 410

Query: 261 HKYN--------------------------IKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           H YN                          +K T   Y + I+   ++GD   A   ++ 
Sbjct: 411 HTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFET 470

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K+G++P     +A +      G++  A +I  +    G+S   ++Y+ LM   S A  
Sbjct: 471 MKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQ 530

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             KA +L   M S   +P V  +N+LI  L    ++    ++   +K+L L P  +TY+I
Sbjct: 531 IDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNI 590

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           LL    ++  +   L L     E G  PN + F  ++   S+
Sbjct: 591 LLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSK 632



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 182/385 (47%), Gaps = 6/385 (1%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            ++ +  I E I   E +    +   D V       +CK +KA+     F K   N    P
Sbjct: 735  ILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHP 794

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            TL ++N LM     S  +E A ++   ++ AG   +   Y  L+    KS +++ +++++
Sbjct: 795  TLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLY 854

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             EM + G EPN  T+  +I    K+  + KA   Y  + S +  P    +  LI    ++
Sbjct: 855  SEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKA 914

Query: 211  GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
            G  ++A  +  EM    +   P+ +    L+     +G++D A E++K + K  I+   +
Sbjct: 915  GRSEQAMKIFEEMLD--YGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLK 972

Query: 271  VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
             YTI + C   TG  + A   ++++   G+ PD V  + +I+  G + +++ A  +  E 
Sbjct: 973  SYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEM 1032

Query: 331  KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            KN+GIS  + +Y++L+     A     A+++YE ++ + L+P+V T NALI         
Sbjct: 1033 KNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNK 1092

Query: 391  PKTMEVLSDMKSLGLCPNTITYSIL 415
             +   V   M  +G  PNT T++ L
Sbjct: 1093 DQAFSVFKKMMVVGCSPNTETFAQL 1117



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 190/389 (48%), Gaps = 11/389 (2%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPNPTLS 93
            ++R GR+ + I ++ +   +  L  +  +         ++  I+EA  F + LV N    
Sbjct: 699  VVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSVCQ 758

Query: 94   TFNMLMSV----CASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
              ++++ +    C   K  D++  F   +  +  G+    + Y  L+     S   +   
Sbjct: 759  DDHVMLPLIKVLCKRKKALDAQNVFD--KFTKNLGIHPTLESYNCLMDGLLGSNFTEKAL 816

Query: 148  EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            E+F +M +AG  PN  TY  L+D   K+ ++ K +  Y  MRS+  +P+ +  N +I+A 
Sbjct: 817  ELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISAL 876

Query: 208  GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
             +S  +++A D+  E+ +      P   T G L+     AG+ ++A ++++ +  Y    
Sbjct: 877  VKSNNLNKALDLYYELMS--GDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGP 934

Query: 268  TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               +Y I IN   ++G+ +FAC ++  M K+G+ PD    + L++     G+++ A +  
Sbjct: 935  NSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYF 994

Query: 328  QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            +E K  G+    +SY+ ++     ++   +AL L+  MK+  + P + T NALI  L   
Sbjct: 995  EELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIA 1054

Query: 388  DQLPKTMEVLSDMKSLGLCPNTITYSILL 416
             ++   +++  +++ +GL P+  TY+ L+
Sbjct: 1055 GKVDVAVKMYEELQLVGLEPSVFTYNALI 1083



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 175/406 (43%), Gaps = 5/406 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L R  RI +   + ++M+ +G       Y      +C + K  K    + K+  +   P 
Sbjct: 280 LGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPD 339

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+  LM       D E   +    ++  G   D   YT LI    KSG VD  F++  
Sbjct: 340 RVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLD 399

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   GI PN+HTY  +I G  KA ++ +A      M S  VKP    +   I   G+SG
Sbjct: 400 VMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSG 459

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
              +A D    M      + P      A +   A  G++  A +++  +HK  +      
Sbjct: 460 DPAKAIDTFETMKKR--GIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVT 517

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + + C S+ G  + A  +  +M  KG  PD + +++LI+    AG+V+AA+++    K
Sbjct: 518 YNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLK 577

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N  ++  +++Y+ L+          KALEL+  M      P   T N+L+  L   D + 
Sbjct: 578 NLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVD 637

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             +++   M  +   P+ +TY+ ++    R+  ++       Q K+
Sbjct: 638 LALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKK 683



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 128/554 (23%), Positives = 235/554 (42%), Gaps = 24/554 (4%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            L   GRISE  D+  D+ + GL   D V +            I +A +    + +    P
Sbjct: 490  LAETGRISEAEDIFNDLHKCGL-SPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEP 548

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
             +   N L++    +   + A+++   ++   L      Y  L+T   K GK+    E+F
Sbjct: 549  DVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELF 608

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
              M  +G  PN  T+ +L+D  +K   V  A   +  M   N  PD + +N +I    + 
Sbjct: 609  GSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIRE 668

Query: 211  GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVYKMIHKYNIKGTP 269
            G +D AF    +M      + PD++T+  L+      G+V+ A + V + +H+  ++   
Sbjct: 669  GRIDYAFWFFHQMKKF---LSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNS 725

Query: 270  EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            + +   + C     + E A S  + +    V  D+  +  LI       K   A  +  +
Sbjct: 726  QFWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDK 785

Query: 330  -AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
              KN GI   + SY+ LM     +   +KALEL+E MKS    P   T N L+ A     
Sbjct: 786  FTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSK 845

Query: 389  QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            ++ K  ++ S+M+S G  PN IT++I++ A  + +++   L L  +       P    + 
Sbjct: 846  RINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYG 905

Query: 449  CIIG--MCSRRYEKARTLNEHVLSFNSGRPQI----------ENKWTSLALMVYREAIVA 496
             +I   + + R E+A  + E +L +  G   +          ++     A  ++++ +  
Sbjct: 906  PLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKE 965

Query: 497  GTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRA 554
            G  P ++  + ++ CL +    D   +  E L ++       +   +I+G G+      A
Sbjct: 966  GIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEA 1025

Query: 555  FSLLEEAASFGIVP 568
             SL  E  + GI P
Sbjct: 1026 LSLFSEMKNRGISP 1039



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 131/623 (21%), Positives = 249/623 (39%), Gaps = 71/623 (11%)

Query: 22   AHDVSEQLH---------SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFF 68
            A D+   LH         +YN L++     G+I +   LL +M  KG  + D +      
Sbjct: 499  AEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGC-EPDVMIINSLI 557

Query: 69   NVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            N       +  A++ F  + N    PT+ T+N+L++          A ++   + E+G  
Sbjct: 558  NTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCP 617

Query: 125  ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
             +   + +L+   +K+  VD   ++F  M      P+V TY  +I G  + G++  AF  
Sbjct: 618  PNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWF 677

Query: 185  YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM--------------------- 223
            +  M+ K + PD V    LI    + G V+ A  V+ E                      
Sbjct: 678  FHQMK-KFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECIL 736

Query: 224  -NAEVHPV-------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              AE+                  DH+ +  +   C     +D      K      I  T 
Sbjct: 737  TEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTL 796

Query: 270  EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            E Y   ++    +   E A  +++DM   G  P+    + L+D  G + ++   +++  E
Sbjct: 797  ESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSE 856

Query: 330  AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             +++G     I+++ ++ A   + N  KAL+LY  + S    PT  T   LI  L    +
Sbjct: 857  MRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGR 916

Query: 390  LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK- 448
              + M++  +M   G  PN++ Y+IL+    +  +++    L  +  ++G+ P+L  +  
Sbjct: 917  SEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTI 976

Query: 449  -----CIIGMCSRRYE-----KARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAG 497
                 CI G      +     K   L+   +S+N     + +++    AL ++ E    G
Sbjct: 977  LVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRG 1036

Query: 498  TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRA 554
              P +   + ++  L +    D+  ++ E L +           +LI G    G  D +A
Sbjct: 1037 ISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKD-QA 1095

Query: 555  FSLLEEAASFGIVPCV-SFKEIP 576
            FS+ ++    G  P   +F ++P
Sbjct: 1096 FSVFKKMMVVGCSPNTETFAQLP 1118



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 111/507 (21%), Positives = 196/507 (38%), Gaps = 80/507 (15%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           YA DV         L + G +    D+L+ M  KG+      Y+     + K+++ + EA
Sbjct: 371 YAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARR-LDEA 429

Query: 81  FRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ----------------- 119
               +    L   PT  ++ + +     S D   A      ++                 
Sbjct: 430 LELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYT 489

Query: 120 ------------------EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
                             + GL  D   Y  L+   +K+G++D   ++  EM++ G EP+
Sbjct: 490 LAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPD 549

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
           V    +LI+   KAG+V  A+  +G +++  + P  V +N L+T  G+ G + +A ++  
Sbjct: 550 VMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFG 609

Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
            M     P  P+ IT  +L+   +    VD A +++  +   N       Y   I    +
Sbjct: 610 SMTESGCP--PNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIR 667

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGII 340
            G  ++A   +  M KK + PD V L  LI      G+VE A +++ E  +Q  +     
Sbjct: 668 EGRIDYAFWFFHQM-KKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQ 726

Query: 341 SYSSLMGACSNAKNWQKALELYEHM----------------------------------- 365
            +  LM         ++A+   E +                                   
Sbjct: 727 FWGELMECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKF 786

Query: 366 -KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
            K++ + PT+ + N L+  L   +   K +E+  DMKS G  PN  TY++LL A  +   
Sbjct: 787 TKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKR 846

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +     L S+ +  G  PN +    II
Sbjct: 847 INKLYDLYSEMRSRGCEPNAITHNIII 873



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 139/301 (46%), Gaps = 9/301 (2%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            +YN L+    +  RI++  DL  +M  +G       ++     + KS    K    +++L
Sbjct: 833  TYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYEL 892

Query: 87   VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    +PT  T+  L+     +  SE A ++   + + G   +  +Y  LI    KSG++
Sbjct: 893  MSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEI 952

Query: 144  DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
            D   E+F +MV  GI P++ +Y  L++     G++ +A   +  ++   + PD V +N +
Sbjct: 953  DFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFI 1012

Query: 204  ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
            I   G+S  +D A  + +EM      + PD  T  AL+     AG+VD A ++Y+ +   
Sbjct: 1013 INGLGKSRRLDEALSLFSEMKNR--GISPDLYTYNALILHLGIAGKVDVAVKMYEELQLV 1070

Query: 264  NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             ++ +   Y   I   S +G+ + A SV+  M   G  P+    + L +    AG V   
Sbjct: 1071 GLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLVHNP 1130

Query: 324  F 324
            F
Sbjct: 1131 F 1131



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 145/369 (39%), Gaps = 4/369 (1%)

Query: 98  LMSVCASSKDSEGAFQVLRLV-QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           +M++  S  D   AF   ++V Q             ++    +  +++ M  VF  M   
Sbjct: 101 VMTILKSISDPNSAFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDLMQKK 160

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
            I  N+ TY  +    +  G + +A  A   M       +   +N LI      G  + A
Sbjct: 161 VIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLL-LPGFCNEA 219

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             V   M +E   + P   T  ALM A    G   +   + + +    ++     YTI I
Sbjct: 220 LKVYKRMISE--GMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICI 277

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
               +    + A  ++ +M  +G  PD +  + LID    AGK++ A E+  + +    S
Sbjct: 278 RALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHS 337

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
              ++Y +LM       + +     +  M+     P V T   LI ALC    + +  ++
Sbjct: 338 PDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDM 397

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L  M + G+ PN  TY+ ++    +   ++  L LL   +  GV P    +   I    +
Sbjct: 398 LDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGK 457

Query: 457 RYEKARTLN 465
             + A+ ++
Sbjct: 458 SGDPAKAID 466



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 9/168 (5%)

Query: 25   VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
            +   L SY  L+      GRI E +   E+++  GL D D V +    N     + + EA
Sbjct: 967  IRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGL-DPDTVSYNFIINGLGKSRRLDEA 1025

Query: 81   FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
               F  + N    P L T+N L+     +   + A ++   +Q  GL+     Y  LI  
Sbjct: 1026 LSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRG 1085

Query: 137  CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
             + SG  D  F VF +M+  G  PN  T+  L +   +AG V   FGA
Sbjct: 1086 HSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLVHNPFGA 1133


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 168/345 (48%), Gaps = 2/345 (0%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           ++  A ++LR V    ++ D  +Y+T+I +  K   V+  F+++ EMV+  I  N+ TY 
Sbjct: 190 ETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYS 249

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           ALI G    G++  A G +  M S+N+ PD   FN L+ A  + G V  A + LA M  +
Sbjct: 250 ALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQ 309

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              + PD +T  +LM       +V+ A+ +   +    +  T   Y I IN   +    +
Sbjct: 310 --GIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVD 367

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  ++ +M  K + P+ +  ++LID    +G++  A E++    ++G    II+YSS++
Sbjct: 368 QAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSIL 427

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A        KA+ L   +K   ++P + T   LI  LC G +L     +  D+   G  
Sbjct: 428 DALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYN 487

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               TY++++         +  L LLS+ K++  IP+ + ++ II
Sbjct: 488 LTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIII 532



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 211/474 (44%), Gaps = 31/474 (6%)

Query: 11  FPYPNGKHANYAHD--VSEQLHSYNRLIRQGRISECI----DLLEDMERK---GLLDMDK 61
           F +P   H  + H    S   H+ N ++    +  C+        DME     G L   K
Sbjct: 25  FQFPENTHFYFIHSFSTSTTFHNNNDVVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSK 84

Query: 62  VYHA--RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
            YH     F         K  +R  K    P    FN+L++          AF VL  + 
Sbjct: 85  HYHTVLSLFQ--------KMEYRGIK----PNFVNFNILINCFCQLGLIPFAFSVLAKIL 132

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           + G + D     T I      G++        ++V  G   +  +YG LI+G  K G+  
Sbjct: 133 KMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETR 192

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            A      +  K V+ D V+++ +I +  +   V+ AFD+ +EM +    +  + +T  A
Sbjct: 193 AALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSR--RISSNIVTYSA 250

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTK 297
           L+      G++  A  ++  +   NI   P+VYT  I ++   + G  + A +    M K
Sbjct: 251 LISGFCIVGKLKDAIGLFNKMTSENI--NPDVYTFNILVDAFCKEGRVKEAKNGLAMMMK 308

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           +G+ PD V  ++L+D      +V  A  IL    ++G++  + SY+ ++      K   +
Sbjct: 309 QGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQ 368

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A++L++ M   ++ P V T N+LI  LC   ++   +E++  M   G  P+ ITYS +L 
Sbjct: 369 AMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILD 428

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 469
           A  +   V+  + LL + K+ G+ PN+  +  +I G+C   R E AR + E +L
Sbjct: 429 ALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLL 482



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 162/370 (43%), Gaps = 51/370 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N LM       +   A  +L  +   G+ A  + Y  +I    K   VD   ++
Sbjct: 313 PDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKL 372

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM +  I PNV TY +LIDG  K+G+++ A     +M  +  +PD + +++++ A  +
Sbjct: 373 FKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCK 432

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK--MIHKYNIKG 267
           +  VD+A  +L ++  +   + P+  T   L+      G+++ AR +++  ++  YN+  
Sbjct: 433 NHLVDKAIALLIKLKDQ--GIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNL-- 488

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   YT+ I      G ++ A S+   M     IPD +    +I       + + A ++L
Sbjct: 489 TVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLL 548

Query: 328 QEAKNQGISVGIISYS----SLMGA-----------CSNAK---NWQKAL--ELY----- 362
           +E   +G+    + Y     S M A           C++++   NW K L   +Y     
Sbjct: 549 REMITRGLLYSFLEYGSWSLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERIYCDCVL 608

Query: 363 --EHMK-------SIKLKPT-----------VSTMNALITALCDGDQLPKTMEVLSDMKS 402
              +M+       S+ +  T           V+T   +I   C      +++ +LS M+ 
Sbjct: 609 TKSNMRDKDVECPSVIIYSTCDWSKQGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEV 668

Query: 403 LGLCPNTITY 412
            G  P+ +TY
Sbjct: 669 NGCIPDAVTY 678


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 229/489 (46%), Gaps = 34/489 (6%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F++L+ VC   + ++ AF+   +++E G+    +    +++   K  +++  + ++ EM 
Sbjct: 182 FDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMF 241

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
              I   V+T+  +++   K G++ KA    G M     KP+ V +N +I      G ++
Sbjct: 242 RLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIE 301

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A  +L  M   V  ++PD  T G+L+      G+++ A  ++  + +  +      Y  
Sbjct: 302 GARRILDAM--RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 359

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+     GD E A S  D+M KKG++P     + L+      G++  A ++++E + +G
Sbjct: 360 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKG 419

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I    I+Y+ L+   S   N +KA +L+  M S  ++PT  T  +LI  L   +++ +  
Sbjct: 420 IIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEAD 479

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           ++   +   G+ P+ I ++ ++       +VE   MLL +     V P+ V F  ++ G 
Sbjct: 480 DLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGR 539

Query: 454 CSR-RYEKARTLNEHV---------LSFNS------GRPQIENKWTSLALMVYREAIVAG 497
           C   + E+AR L + +         +S+N+       R  I++     A  V  E +  G
Sbjct: 540 CREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKD-----AFRVRDEMLSIG 594

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVE---NLGVSADALKRSNLCSLIDGFGEYDPRA 554
             PT+   + ++ CL      D+ E L++   N G+S D    S   SLI+G G  D   
Sbjct: 595 FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDD---STYLSLIEGMGNVD--- 648

Query: 555 FSLLEEAAS 563
            +L+E+ AS
Sbjct: 649 -TLVEDNAS 656



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 38/290 (13%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+     +GR+ E  D++++M +KG++                             
Sbjct: 391 TYNLLVHALFMEGRMGEADDMIKEMRKKGII----------------------------- 421

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P   T+N+L++  +   +++ AF +   +   G++     YT+LI   ++  ++   
Sbjct: 422 ---PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEA 478

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++F ++++ G+ P+V  + A++DG    G V +AF     M  K+V PD V FN L+  
Sbjct: 479 DDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 538

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G V+ A  +L EM  +   + PDHI+   L+      G +  A  V   +      
Sbjct: 539 RCREGKVEEARMLLDEM--KRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFN 596

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            T   Y   I C  +  + + A  +  +M  KG+ PD+    +LI+  G+
Sbjct: 597 PTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGN 646



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/217 (19%), Positives = 97/217 (44%)

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           I    L++ C    + D A + + M+ +  I    E     ++   +    E A  +Y +
Sbjct: 180 IVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAE 239

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M +  +       + +++     GK++ A E +   +  G    ++SY++++   S+  N
Sbjct: 240 MFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN 299

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            + A  + + M+   ++P   T  +LI+ +C   +L +   +   M  +GL PN +TY+ 
Sbjct: 300 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 359

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L+     K D+E       +  + G++P++  +  ++
Sbjct: 360 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLV 396



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 21/282 (7%)

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           + + AF+     K +GI   I + + ++         + A  LY  M  +++  TV T N
Sbjct: 194 RADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFN 253

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            ++  LC   +L K  E +  M+ LG  PN ++Y+ ++     + ++E    +L   +  
Sbjct: 254 IMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK 313

Query: 439 GVIPNLVMFKCII-GMCSR-RYEKARTLNE---------HVLSFNSGRPQIENKWTSLAL 487
           G+ P+   +  +I GMC   R E+A  L +         + +++N+      NK      
Sbjct: 314 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 373

Query: 488 MVYREAIV-AGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSL 543
             YR+ +V  G +P+V   + ++  L +       + +++ +   G+  DA+  +    L
Sbjct: 374 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYN---IL 430

Query: 544 IDGFGE--YDPRAFSLLEEAASFGIVPC-VSFKEIPVVVDAR 582
           I+G+       +AF L  E  S GI P  V++  +  V+  R
Sbjct: 431 INGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRR 472


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 182/380 (47%), Gaps = 6/380 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P L++++ L++   +++D   A  + RL+   +E+ L+ D  L++ LI+  A++   DA 
Sbjct: 188 PDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAA 247

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALIT 205
            E+       G+ P  +   ALI     AG+VA+A   +     +  +KP    +NAL+ 
Sbjct: 248 LELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLK 307

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G++  A  VL EM+     V PD  T   L+ A   AG+ + AR + K +    +
Sbjct: 308 GYVRIGSLKNAEQVLDEMSQ--CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGV 365

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K +  V++  +      GDW+ A +V  +M   GV PD  F + +ID  G    +  A +
Sbjct: 366 KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMD 425

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
              + + +GI   ++++++L+ A        +A EL+E M+     P  +T N +I  L 
Sbjct: 426 AFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLG 485

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           + +       +LS+MK  GL PN ITY+ L+    R    +  +  +   K DG+ P+  
Sbjct: 486 EQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPT 545

Query: 446 MFKCIIGMCSRRYEKARTLN 465
           M+  ++   ++R      LN
Sbjct: 546 MYHALVNAYAQRGLADHALN 565



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 165/342 (48%), Gaps = 5/342 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P    +N L+         + A QVL  + + G+  D   Y+ L+    ++G+ ++   
Sbjct: 296 KPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARI 355

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G++P+ + +  ++ G    G   KAF     M++  V+PDR  +N +I   G
Sbjct: 356 LLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFG 415

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +  A D   +M  E   ++PD +T   L+ A    G+ DRA E+++ + + N    
Sbjct: 416 KYNCLGHAMDAFNKMREEG--IEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPG 473

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I IN   +   WE   ++  +M ++G++P+ +  + L+D  G +G+ + A + ++
Sbjct: 474 TTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIE 533

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             K  G+      Y +L+ A +       AL + + MK+  L+ ++  +N+LI A  +  
Sbjct: 534 AMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDR 593

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEV 427
           ++ +   VL  M+  GL P+ ITY+ L   L+  E+ D V V
Sbjct: 594 RVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPV 635



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS--- 93
           R GR  E ID +E M+  GL     +YHA   N    +     A    K +    L    
Sbjct: 521 RSGRYKEAIDCIEAMKADGLKPSPTMYHA-LVNAYAQRGLADHALNVVKAMKADGLEVSI 579

Query: 94  -TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
              N L++     +    AF VL+ ++E GL+ D   YTTL+    +  + D +  ++ E
Sbjct: 580 LVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEE 639

Query: 153 MVNAGIEPNVHTYGALIDG 171
           M+ +G  P+      L  G
Sbjct: 640 MITSGCAPDRKARAMLRSG 658


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/489 (24%), Positives = 229/489 (46%), Gaps = 34/489 (6%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F++L+ VC   + ++ AF+   +++E G+    +    +++   K  +++  + ++ EM 
Sbjct: 160 FDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMF 219

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
              I   V+T+  +++   K G++ KA    G M     KP+ V +N +I      G ++
Sbjct: 220 RLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIE 279

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A  +L  M   V  ++PD  T G+L+      G+++ A  ++  + +  +      Y  
Sbjct: 280 GARRILDAM--RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 337

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+     GD E A S  D+M KKG++P     + L+      G++  A ++++E + +G
Sbjct: 338 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKG 397

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I    I+Y+ L+   S   N +KA +L+  M S  ++PT  T  +LI  L   +++ +  
Sbjct: 398 IIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEAD 457

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           ++   +   G+ P+ I ++ ++       +VE   MLL +     V P+ V F  ++ G 
Sbjct: 458 DLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGR 517

Query: 454 CSR-RYEKARTLNEHV---------LSFNS------GRPQIENKWTSLALMVYREAIVAG 497
           C   + E+AR L + +         +S+N+       R  I++     A  V  E +  G
Sbjct: 518 CREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKD-----AFRVRDEMLSIG 572

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVE---NLGVSADALKRSNLCSLIDGFGEYDPRA 554
             PT+   + ++ CL      D+ E L++   N G+S D    S   SLI+G G  D   
Sbjct: 573 FNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDD---STYLSLIEGMGNVD--- 626

Query: 555 FSLLEEAAS 563
            +L+E+ AS
Sbjct: 627 -TLVEDNAS 634



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 128/290 (44%), Gaps = 38/290 (13%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+     +GR+ E  D++++M +KG++                             
Sbjct: 369 TYNLLVHALFMEGRMGEADDMIKEMRKKGII----------------------------- 399

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P   T+N+L++  +   +++ AF +   +   G++     YT+LI   ++  ++   
Sbjct: 400 ---PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEA 456

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++F ++++ G+ P+V  + A++DG    G V +AF     M  K+V PD V FN L+  
Sbjct: 457 DDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 516

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G V+ A  +L EM      + PDHI+   L+      G +  A  V   +      
Sbjct: 517 RCREGKVEEARMLLDEMKR--RGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFN 574

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            T   Y   I C  +  + + A  +  +M  KG+ PD+    +LI+  G+
Sbjct: 575 PTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGN 624



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/217 (19%), Positives = 97/217 (44%)

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           I    L++ C    + D A + + M+ +  I    E     ++   +    E A  +Y +
Sbjct: 158 IVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAE 217

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M +  +       + +++     GK++ A E +   +  G    ++SY++++   S+  N
Sbjct: 218 MFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGN 277

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            + A  + + M+   ++P   T  +LI+ +C   +L +   +   M  +GL PN +TY+ 
Sbjct: 278 IEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNT 337

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L+     K D+E       +  + G++P++  +  ++
Sbjct: 338 LIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLV 374



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 21/282 (7%)

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           + + AF+     K +GI   I + + ++         + A  LY  M  +++  TV T N
Sbjct: 172 RADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFN 231

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            ++  LC   +L K  E +  M+ LG  PN ++Y+ ++     + ++E    +L   +  
Sbjct: 232 IMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK 291

Query: 439 GVIPNLVMFKCII-GMCSR-RYEKARTLNE---------HVLSFNSGRPQIENKWTSLAL 487
           G+ P+   +  +I GMC   R E+A  L +         + +++N+      NK      
Sbjct: 292 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 351

Query: 488 MVYREAIV-AGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSL 543
             YR+ +V  G +P+V   + ++  L +       + +++ +   G+  DA+  +    L
Sbjct: 352 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYN---IL 408

Query: 544 IDGFGE--YDPRAFSLLEEAASFGIVPC-VSFKEIPVVVDAR 582
           I+G+       +AF L  E  S GI P  V++  +  V+  R
Sbjct: 409 INGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRR 450


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 215/449 (47%), Gaps = 16/449 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-L 86
           YN L+    R G++     +L+ M+  G+      Y       C++ K ++EAF  ++ +
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRT-KGVEEAFDLYEGM 265

Query: 87  VPNPTL---STFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           V N  L    T + L++ +C   + SE A+ + R + + G   +   Y TLI + AK+G+
Sbjct: 266 VRNGVLLDVVTLSALVAGLCRDGRFSE-AYALFREMDKVGAAPNHVTYCTLIDSLAKAGR 324

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
              +  +  EMV+ G+  ++ TY AL+D   K G+  +         S N+ P+ V +  
Sbjct: 325 GKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTV 384

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI A  ++  VD A  VL EM  E   + P+ +T  +++      G +D+A E  +M+ +
Sbjct: 385 LIDALCKAHNVDEAEQVLLEM--EEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKE 442

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I      Y   I+   +    + A  VY DM  +GV  ++  + +L++     GK+E 
Sbjct: 443 RGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEE 502

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  + ++A   G+S+  ++Y++L+     A +   A +  + +    + P     N  I 
Sbjct: 503 AMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFIN 562

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC   +  +    L++M+++GL P+  TY+ ++V+  RK +    L LL + K   + P
Sbjct: 563 CLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKP 622

Query: 443 NLVMFKCIIG--MCSRRYEKAR-TLNEHV 468
           NL+ +  ++     +   EKA+  LNE V
Sbjct: 623 NLITYNTLVAGLFGTGAVEKAKYLLNEMV 651



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 195/461 (42%), Gaps = 46/461 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFF---KL 86
           + L + GR  E + LL +M  +G++ MD V +    +    Q     +K+  RF     L
Sbjct: 317 DSLAKAGRGKELLSLLGEMVSRGVV-MDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL 375

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            PN    T+ +L+     + + + A QVL  ++E  +  +   ++++I    K G +D  
Sbjct: 376 SPNGV--TYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E    M   GI PNV TYG LIDG  K      A   Y  M  + VK ++ + ++L+  
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG 493

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             Q+G ++ A  +  +  A    +  DH+    L+     AG +  A +  + +   N+ 
Sbjct: 494 LRQNGKIEEAMALFKD--ASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNML 551

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
               VY + INC    G ++ A S   +M   G+ PD+   + +I      G+   A ++
Sbjct: 552 PDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611

Query: 327 LQEAKNQGISVGIISYSSLMG-----------------------------------ACSN 351
           L E K   I   +I+Y++L+                                    ACS 
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQ 671

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           ++     L+++E M +  L   ++  N L+  LC      K   VL +M   G+ P+TIT
Sbjct: 672 SRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTIT 731

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           ++ L++   +   ++      +Q     + PN+  F  ++G
Sbjct: 732 FNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 178/422 (42%), Gaps = 21/422 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G+I E + L +D    GL  +D V +    +       +  AF+F + + +   
Sbjct: 492 NGLRQNGKIEEAMALFKDASGSGL-SLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNM 550

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P    +N+ ++ +C   K  E A   L  ++  GLK D   Y T+I +  + G+     
Sbjct: 551 LPDAVVYNVFINCLCMLGKFKE-AKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++ HEM  + I+PN+ TY  L+ G    G V KA      M S    P  +    ++ AC
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQAC 669

Query: 208 GQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            QS  +D   D+   M NA +H    D      L++     G   +A  V + +    I 
Sbjct: 670 SQSRRLDVILDIHEWMMNAGLHA---DITVYNTLLQVLCYHGMTRKATVVLEEMLGSGI- 725

Query: 267 GTPEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             P+  T    I  +C S   D  FA   Y  M  + + P+    + L+      G++  
Sbjct: 726 -APDTITFNALILGHCKSSHLDNAFA--TYAQMLHQNISPNIATFNTLLGGLESVGRIGE 782

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  +L E +  G+    ++Y  L        N  +A+ LY  M      P VST NALI+
Sbjct: 783 AGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALIS 842

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVI 441
                  + +  E+  DM+  G+ P + TY IL+    R ++  EV    L   KE G  
Sbjct: 843 DFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVK-KCLKDMKEKGFS 901

Query: 442 PN 443
           P+
Sbjct: 902 PS 903



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 150/343 (43%), Gaps = 2/343 (0%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E A  + +    +GL  D   YTTLI    K+G +   F+   E+++  + P+   Y   
Sbjct: 501 EEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVF 560

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I+     G+  +A      MR+  +KPD+  +N +I +  + G   +A  +L EM  ++ 
Sbjct: 561 INCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEM--KMS 618

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + P+ IT   L+      G V++A+ +   +       +   +   +  CSQ+   +  
Sbjct: 619 SIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVI 678

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             +++ M   G+  D    + L+    + G    A  +L+E    GI+   I++++L+  
Sbjct: 679 LDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILG 738

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              + +   A   Y  M    + P ++T N L+  L    ++ +   VL +M+  GL PN
Sbjct: 739 HCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPN 798

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +TY IL     ++ +    + L  +    G +P +  +  +I
Sbjct: 799 NLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 137/322 (42%), Gaps = 37/322 (11%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N L++      D+  A  V   +   GL  D   Y TL+    ++G+VDA   V   M 
Sbjct: 172 WNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMK 231

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            AG++PNV TY   I    +   V +AF  Y  M    V  D V  +AL+    + G   
Sbjct: 232 EAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFS 291

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A+ +  EM+       P+H+T   L+ + A AG   R +E+                  
Sbjct: 292 EAYALFREMDKV--GAAPNHVTYCTLIDSLAKAG---RGKEL------------------ 328

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
                          S+  +M  +GV+ D V  +AL+D+ G  GK +   + L+ A +  
Sbjct: 329 --------------LSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDN 374

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +S   ++Y+ L+ A   A N  +A ++   M+   + P V T +++I        L K  
Sbjct: 375 LSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKAT 434

Query: 395 EVLSDMKSLGLCPNTITYSILL 416
           E    MK  G+ PN +TY  L+
Sbjct: 435 EYKRMMKERGINPNVVTYGTLI 456



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 190/439 (43%), Gaps = 27/439 (6%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITAC 207
           V  EM   G+  +  T   L+ G  + GQV  A  A    R   +   D + +N LI   
Sbjct: 122 VLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAA--AALADRGGGIHALDVIGWNTLIAGY 179

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G    A  V   M A+  P+D   +    L+     AGQVD AR V  M+ +  +  
Sbjct: 180 CRVGDTPAALSVADRMTAQGLPMDV--VGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDP 237

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  I    +T   E A  +Y+ M + GV+ D V LSAL+      G+   A+ + 
Sbjct: 238 NVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALF 297

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E    G +   ++Y +L+ + + A   ++ L L   M S  +   + T  AL+  L   
Sbjct: 298 REMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQ 357

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +  +  + L    S  L PN +TY++L+ A  +  +V+    +L + +E  + PN+V F
Sbjct: 358 GKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTF 417

Query: 448 KCII-GMCSR----------RYEKARTLNEHVLSFNS---GRPQIENKWTSLALMVYREA 493
             +I G   R          R  K R +N +V+++ +   G  + + +    AL VY + 
Sbjct: 418 SSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQ--DAALEVYHDM 475

Query: 494 IVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENLGVSADALKRSNLCSLIDG-FGEY 550
           +  G      +V  ++  L+   N  I E   L ++   S  +L   N  +LIDG F   
Sbjct: 476 LCEGVKVNKFIVDSLVNGLR--QNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAG 533

Query: 551 D-PRAFSLLEEAASFGIVP 568
           D P AF   +E     ++P
Sbjct: 534 DMPTAFKFGQELMDRNMLP 552



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 148/361 (40%), Gaps = 44/361 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    R+G  ++ + LL +M+   +      Y+     +  +    K  +   ++
Sbjct: 591 TYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEM 650

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V    +P+  T   ++  C+ S+  +    +   +  AGL AD  +Y TL+      G  
Sbjct: 651 VSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMT 710

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                V  EM+ +GI P+  T+ ALI G  K+  +  AF  Y  M  +N+ P+   FN L
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTL 770

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +      G +  A  VL EM  E   ++P+++T                          Y
Sbjct: 771 LGGLESVGRIGEAGTVLIEM--EKSGLEPNNLT--------------------------Y 802

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           +I        +A     Q+   E A  +Y +M  KG +P     +ALI     AG +  A
Sbjct: 803 DI--------LATGHGKQSNKVE-AMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQA 853

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E+ ++ + +G+     +Y  L+   S  +N  +  +  + MK     P+  T++ +  A
Sbjct: 854 KELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRA 913

Query: 384 L 384
            
Sbjct: 914 F 914



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 6/196 (3%)

Query: 273 TIAIN-CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           T+A N   +   D   A +V  +M K+GV  D V ++ L+      G+V+AA  +    +
Sbjct: 103 TVAYNILLAALSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD--R 160

Query: 332 NQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             GI ++ +I +++L+       +   AL + + M +  L   V   N L+   C   Q+
Sbjct: 161 GGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQV 220

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                VL  MK  G+ PN  TY+  +V   R   VE    L      +GV+ ++V    +
Sbjct: 221 DAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSAL 280

Query: 451 I-GMCSR-RYEKARTL 464
           + G+C   R+ +A  L
Sbjct: 281 VAGLCRDGRFSEAYAL 296


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 202/438 (46%), Gaps = 10/438 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF---FNVCKSQKAIKEAFRFFKLVPNPTLS 93
           + G+++E     ++M   GL+  + +Y       F      +A+    R   L   P + 
Sbjct: 555 KTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQ 614

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T +  +     +   + A +V   ++E GL  D   Y++LI+   K G+V+  FE+  EM
Sbjct: 615 TCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM 674

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              GI PN+  Y AL+DG  K+G + +A   +  M  K ++PD V ++ +I    +S  V
Sbjct: 675 CLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENV 734

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             AF +  EM ++   V P      AL+  C   G +++A  +++ + +     T    T
Sbjct: 735 AEAFSLFHEMPSK--GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNT 792

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           +    C      E A  ++ +M  K ++PD V  + +ID+   AGK+E A  + +E + +
Sbjct: 793 LIDGYCKSCKIQE-ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQER 851

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            + V  ++Y+SLM   +      +   L+E M +  +KP   T   +I A C  D L + 
Sbjct: 852 NLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEA 911

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
            ++  ++   G+      + +L+ A  +++D+     LL +  E G+ P+L     ++  
Sbjct: 912 FKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLV-- 969

Query: 454 CSRRYEKARTLNEHVLSF 471
             R + +A  ++E    F
Sbjct: 970 --RSFHEAGKMDEATRVF 985



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 181/381 (47%), Gaps = 8/381 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L++ GR+ E + +  +++ KGL+     Y +     CK Q  +++AF     +      P
Sbjct: 623 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK-QGEVEKAFELHDEMCLKGIAP 681

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            +  +N L+     S D + A ++   + E GL+ D   Y+T+I    KS  V   F +F
Sbjct: 682 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 741

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           HEM + G++P+   Y AL+ GC K G + KA   +  M  K      + FN LI    +S
Sbjct: 742 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKS 800

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             +  A  +  EM A+   + PDH+T   ++     AG+++ A  ++K + + N+     
Sbjct: 801 CKIQEASQLFQEMIAK--QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTV 858

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            YT  +   ++ G      ++++ M  KGV PDEV    +I        +  AF++  E 
Sbjct: 859 TYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEV 918

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +G+      +  L+ A    ++  +A +L + M  + LKP+++  N L+ +  +  ++
Sbjct: 919 VGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKM 978

Query: 391 PKTMEVLSDMKSLGLCPNTIT 411
            +   V   +KSLGL P+T T
Sbjct: 979 DEATRVFEGVKSLGLVPDTTT 999



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 192/434 (44%), Gaps = 5/434 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
            +R+G I E + + + M   G+      Y+     +CK  K  K A     +V     P 
Sbjct: 343 FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPN 402

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             TF +L+       +   A ++L  +++  L      Y  +I        +    ++  
Sbjct: 403 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 462

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M  +G++PNV  Y  LI   A  G++ +A      M    V PD   +NA+I+   ++G
Sbjct: 463 KMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAG 522

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A   L E+      + PD +T GA +   +  G++  A + +  +  + +     +
Sbjct: 523 KMEEASTYLLEIQG--RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 580

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           YT+ IN   + G+   A S++  +   GV+PD    SA I      G+V+ A ++  E K
Sbjct: 581 YTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 640

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   + +YSSL+         +KA EL++ M    + P +   NAL+  LC    + 
Sbjct: 641 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQ 700

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  ++   M   GL P+++TYS ++    + ++V     L  +    GV P+  ++  ++
Sbjct: 701 RARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 760

Query: 452 GMCSRRYEKARTLN 465
             C +  +  + +N
Sbjct: 761 HGCCKEGDMEKAMN 774



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 188/384 (48%), Gaps = 7/384 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+  ++  +++     KD   A ++L  +  +GLK +  +Y+ LI   A  G+++    +
Sbjct: 436 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRL 495

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M  +G+ P++  Y A+I   +KAG++ +A      ++ + +KPD V F A I    +
Sbjct: 496 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSK 555

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +  A     EM    H + P++     L+     AG +  A  +++ +H   +   P
Sbjct: 556 TGKMTEAAKYFDEMLD--HGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGV--LP 611

Query: 270 EVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +V T +  I+   + G  + A  V+ ++ +KG++PD    S+LI      G+VE AFE+ 
Sbjct: 612 DVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELH 671

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E   +GI+  I  Y++L+     + + Q+A +L++ M    L+P   T + +I   C  
Sbjct: 672 DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKS 731

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           + + +   +  +M S G+ P++  Y+ L+  C ++ D+E  + L  +  + G    L   
Sbjct: 732 ENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 791

Query: 448 KCIIGMC-SRRYEKARTLNEHVLS 470
             I G C S + ++A  L + +++
Sbjct: 792 TLIDGYCKSCKIQEASQLFQEMIA 815



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 191/431 (44%), Gaps = 7/431 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           G I E ++L   M  KGL+     Y      +C++++  +    F ++      P  +  
Sbjct: 277 GDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNAC 336

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           + L+       D +   ++  ++   G+  +   Y  LI    K GK++   E+   MV 
Sbjct: 337 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVT 396

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G +PN  T+  LI+G  +   + +A      M  +N+ P  V + A+I        +  
Sbjct: 397 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL 456

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  +L +M      + P+ +    L+ A A+ G+++ AR +   +    +      Y   
Sbjct: 457 ANKLLEKMT--FSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAI 514

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+C S+ G  E A +   ++  +G+ PD V   A I      GK+  A +   E  + G+
Sbjct: 515 ISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL 574

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
                 Y+ L+     A N  +AL ++  + ++ + P V T +A I  L    ++ + ++
Sbjct: 575 MPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALK 634

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           V S++K  GL P+  TYS L+    ++ +VE    L  +    G+ PN+ ++  ++ G+C
Sbjct: 635 VFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLC 694

Query: 455 -SRRYEKARTL 464
            S   ++AR L
Sbjct: 695 KSGDIQRARKL 705



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 150/334 (44%), Gaps = 4/334 (1%)

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           +L+    K G ++  ++V++ M++A +  +V+TY  L+    K G +  A      M  K
Sbjct: 198 SLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEK 257

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + P+  +++ +I    Q G +D A ++   M  +   + P+  T   +      A +++
Sbjct: 258 GLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEK--GLVPNTYTYTIITAGLCRAKRMN 315

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A+  ++ + K  +K      +  I+   + GD +    + D M   G+  + +  + LI
Sbjct: 316 EAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLI 375

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                 GK+E A EIL+     G      ++  L+       N  +ALEL + M+   L 
Sbjct: 376 HGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLV 435

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P+  +  A+I  LC    L    ++L  M   GL PN + YSIL++A   +  +E    L
Sbjct: 436 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRL 495

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSR--RYEKART 463
           L      GV P++  +  II   S+  + E+A T
Sbjct: 496 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAST 529



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 108/482 (22%), Positives = 193/482 (40%), Gaps = 34/482 (7%)

Query: 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171
           ++V   + +A +  D   YT L+    K+G +     V  EM   G+ PN   Y  +I+G
Sbjct: 213 WKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEG 272

Query: 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
             + G + +A      M  K + P+   +  +     ++  ++ A     EM      + 
Sbjct: 273 MCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKT--GLK 330

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           PD+    AL+      G +D    +  ++    I      Y + I+   + G  E A  +
Sbjct: 331 PDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEI 390

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
              M   G  P+      LI+       +  A E+L E + + +    +SY +++    +
Sbjct: 391 LKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCH 450

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
            K+   A +L E M    LKP V   + LI A     ++ +   +L  M   G+ P+   
Sbjct: 451 CKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFC 510

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE-- 466
           Y+ ++    +   +E     L + +  G+ P+ V F   I       +  E A+  +E  
Sbjct: 511 YNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEML 570

Query: 467 -HVLSFN--------SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPY 516
            H L  N        +G  +  N   +L+  ++R     G +P V+  S  + G L+   
Sbjct: 571 DHGLMPNNPLYTVLINGHFKAGNLMEALS--IFRRLHALGVLPDVQTCSAFIHGLLK--- 625

Query: 517 NADIRERL-----VENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP 568
           N  ++E L     ++  G+  D    S   SLI GF   GE + +AF L +E    GI P
Sbjct: 626 NGRVQEALKVFSELKEKGLVPDVFTYS---SLISGFCKQGEVE-KAFELHDEMCLKGIAP 681

Query: 569 CV 570
            +
Sbjct: 682 NI 683



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 154/351 (43%), Gaps = 16/351 (4%)

Query: 25   VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
            ++  +  YN L+    + G I     L + M  KGL      Y       CKS+  + EA
Sbjct: 679  IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN-VAEA 737

Query: 81   FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            F  F  +P+    P    +N L+  C    D E A  + R + + G  A    + TLI  
Sbjct: 738  FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDG 796

Query: 137  CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
              KS K+    ++F EM+   I P+  TY  +ID   KAG++ +A   +  M+ +N+  D
Sbjct: 797  YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 856

Query: 197  RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRARE 255
             V + +L+    + G     F +  +M A+   V PD +T G ++ A C     V+  + 
Sbjct: 857  TVTYTSLMYGYNKLGQSSEVFALFEKMVAK--GVKPDEVTYGLVIYAHCKEDNLVEAFKL 914

Query: 256  VYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
              +++ K  + KGT  ++ + I    +  D   A  + D+M + G+ P     + L+   
Sbjct: 915  RDEVVGKGMLTKGT--IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSF 972

Query: 315  GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
              AGK++ A  + +  K+ G+     +   L+    N  + + A  L + +
Sbjct: 973  HEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 1023



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 134/318 (42%), Gaps = 40/318 (12%)

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           VVF+ LI +  + G +D A +V     A+   +    I   +L+K     G ++   +VY
Sbjct: 159 VVFDILIDSYKRMGMLDEAANVF--FVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVY 216

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             +    +      YT  +    +TGD   A  V  +M +KG+ P+E   S +I+     
Sbjct: 217 NGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQV 276

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP----- 372
           G ++ A E+ +    +G+     +Y+ +      AK   +A   +E M+   LKP     
Sbjct: 277 GDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNAC 336

Query: 373 ------------------------------TVSTMNALITALCDGDQLPKTMEVLSDMKS 402
                                          + T N LI  LC   ++ K  E+L  M +
Sbjct: 337 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVT 396

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEK 460
           LG  PN+ T+ +L+    R+ ++   L LL + ++  ++P+ V +  +I G+C  +    
Sbjct: 397 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL 456

Query: 461 ARTLNEHVLSFNSGRPQI 478
           A  L E  ++F+  +P +
Sbjct: 457 ANKLLEK-MTFSGLKPNV 473



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 33/176 (18%), Positives = 75/176 (42%)

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +P V+ I I+   + G  + A +V+       ++   +  ++L+      G +E  +++ 
Sbjct: 157 SPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVY 216

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
               +  +   + +Y+ L+GA     + + A  +   M    L P     + +I  +C  
Sbjct: 217 NGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQV 276

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
             + + +E+   M   GL PNT TY+I+     R   +    +   + ++ G+ P+
Sbjct: 277 GDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPD 332


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 182/406 (44%), Gaps = 5/406 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L R G+I E  ++   M+ +G       Y      +C + +       F K+  N   P 
Sbjct: 272 LGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPD 331

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
              +  L+       D +   +    ++  G   D   +T L+    K+   D  F  F 
Sbjct: 332 QVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFD 391

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   GI PN+HTY  LI G  +AG++  A    G M S  V+P    +N  I   G+SG
Sbjct: 392 VMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSG 451

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
              +A +   +M A+   + P+ +   A + + A  G++  A+ ++  + +  +      
Sbjct: 452 ETGKAVETFEKMKAK--GIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVT 509

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + + C S+ G  + A ++  +M + G  PD + +++LID    AG+V+ A+++    K
Sbjct: 510 YNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMK 569

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +  +S  +++Y++L+         QKA+EL+E M   K  P   + N L+   C  D++ 
Sbjct: 570 DMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVE 629

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             +++ S M  +   P+ +TY+ ++    +++ V        Q K+
Sbjct: 630 LALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK 675



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 203/452 (44%), Gaps = 34/452 (7%)

Query: 27  EQLHSYNRLIRQG------------------RISECID-LLEDMERKGLLDMDKVYHARF 67
           E L  Y R++ +G                  R SE +  LL++ME  GL     VY    
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGL--RPNVYT--- 264

Query: 68  FNVC----KSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           F +C         I EA+  F+ + +    P L T+ +L+    ++   E A ++   ++
Sbjct: 265 FTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMK 324

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
             G K D  +Y TL+      G +D   E + +M   G  P+V T+  L+D   KA    
Sbjct: 325 ANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFD 384

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           +AF  + +MR + + P+   +N LI    ++G ++ A  +L  M  E   V P   T   
Sbjct: 385 EAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTM--ESVGVQPTAYTYNI 442

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
            +     +G+  +A E ++ +    I         ++   ++ G    A ++++ + + G
Sbjct: 443 FIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENG 502

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + PD V  + ++      G+V+ A  +L E    G    +I  +SL+ +   A    +A 
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAW 562

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           ++++ MK +KL PTV T N L++ L    ++ K +E+   M      PNTI+++ LL   
Sbjct: 563 QMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCF 622

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            + D+VE+ L + S+       P+++ +  +I
Sbjct: 623 CKNDEVELALKMFSKMTVMDCKPDVLTYNTVI 654



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 164/348 (47%), Gaps = 3/348 (0%)

Query: 98   LMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
            L+ V    K    A+Q+  +  ++ G+      Y  LI    +    +  +++F +M N 
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 157  GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
            G  P+  T+  L+    K+G++ + F  Y  M S+  KPD + +N +I++  +S  +D+A
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877

Query: 217  FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             D   ++ +      P   T G L+   A  G+++ A  +++ +  Y  K    ++ I I
Sbjct: 878  LDFFYDLVSS--DFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILI 935

Query: 277  NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
            N   + GD E AC ++  M  +G+ PD    + L+D    AG+V+ A     E K+ G+ 
Sbjct: 936  NGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLD 995

Query: 337  VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
               I+Y+ ++     ++  ++AL LY  M++  + P + T N+L+  L     + +   +
Sbjct: 996  PDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055

Query: 397  LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
              +++  GL P+  TY+ L+      ++ E    +      DG  PN+
Sbjct: 1056 YEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNI 1103



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 167/351 (47%), Gaps = 8/351 (2%)

Query: 70   VCKSQKAIKEAFRFF-----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            +CK ++ +  A++ F     KL  +PTL+++N L+        +E A+ + + ++  G  
Sbjct: 762  LCKHKRELY-AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCA 820

Query: 125  ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
             D   +  L+    KSGK+  +FE++ EM++   +P+  TY  +I   AK+  + KA   
Sbjct: 821  PDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDF 880

Query: 185  YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
            +  + S + +P    +  LI    + G ++ A  +  EM+   +   P+      L+   
Sbjct: 881  FYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSD--YGCKPNCAIFNILINGY 938

Query: 245  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
               G  + A +++K +    I+   + YTI ++C    G  + A   ++++   G+ PD 
Sbjct: 939  GKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDF 998

Query: 305  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
            +  + +I+  G + ++E A  +  E +N+GI   + +Y+SLM     A   ++A  +YE 
Sbjct: 999  IAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEE 1058

Query: 365  MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            ++   L+P V T NALI      +       V  +M   G  PN  TY+ L
Sbjct: 1059 LQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 158/355 (44%), Gaps = 6/355 (1%)

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           VL  +++AG   +   Y  LI    +SG      EV+  MV+ G++P++ TY AL+    
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALG 238

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           K             M    ++P+   F   I   G++G +D A+++   M+ E     PD
Sbjct: 239 KKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE--GCGPD 296

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +T   L+ A  NAGQ++ A+E++  +     K    +Y   ++  +  GD +     + 
Sbjct: 297 LVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWS 356

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M   G +PD V  + L+D    A   + AF      + QGI   + +Y++L+     A 
Sbjct: 357 QMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAG 416

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             + AL+L   M+S+ ++PT  T N  I       +  K +E    MK+ G+ PN +  +
Sbjct: 417 RIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACN 476

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
             L +      +     + +  +E+G+ P+ V +     M  + Y K   ++E V
Sbjct: 477 ASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTY----NMMMKCYSKVGQVDEAV 527



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 143/306 (46%), Gaps = 3/306 (0%)

Query: 147  FEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            +++F +     GI P + +Y  LI    +     KA+  +  M++    PD   FN L+ 
Sbjct: 772  YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 206  ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              G+SG +   F++  EM +      PD IT   ++ + A +  +D+A + +  +   + 
Sbjct: 832  VHGKSGKITELFELYKEMIS--RRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDF 889

Query: 266  KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            + TP  Y   I+  ++ G  E A  ++++M+  G  P+    + LI+  G  G  E A +
Sbjct: 890  RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 326  ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            + +   N+GI   + SY+ L+     A    +AL  +  +KS  L P     N +I  L 
Sbjct: 950  LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLG 1009

Query: 386  DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               ++ + + + ++M++ G+ P+  TY+ L++       VE    +  + +  G+ P++ 
Sbjct: 1010 KSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVF 1069

Query: 446  MFKCII 451
             +  +I
Sbjct: 1070 TYNALI 1075



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/424 (20%), Positives = 176/424 (41%), Gaps = 45/424 (10%)

Query: 70  VCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +CK+ +   EAF  F ++      P L T+N L+     +   E A ++L  ++  G++ 
Sbjct: 377 LCKA-RDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQP 435

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
               Y   I    KSG+     E F +M   GI PN+    A +   A+ G++ +A   +
Sbjct: 436 TAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMF 495

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             +R   + PD V +N ++    + G VD A ++L+EM    +  +PD I + +L+ +  
Sbjct: 496 NGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIR--NGCEPDVIVVNSLIDSLY 553

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            AG+VD A +++  +    +  T   Y   ++   + G  + A  +++ M +K   P+ +
Sbjct: 554 KAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTI 613

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + L+D      +VE A ++  +         +++Y++++           A   +  +
Sbjct: 614 SFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL 673

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM------------------------- 400
           K   + P   T+  L+  L    Q+   + +  D                          
Sbjct: 674 KK-SMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAE 732

Query: 401 --KSL---------GLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
             K++         G+C  ++    ++ V C+ K ++    +     K+ G+ P L  + 
Sbjct: 733 MDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYN 792

Query: 449 CIIG 452
           C+IG
Sbjct: 793 CLIG 796



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            L +   + + +D   D+         + Y      + K  + ++EA R F+ + +    P
Sbjct: 868  LAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGR-LEEAMRLFEEMSDYGCKP 926

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              + FN+L++      D+E A Q+ + +   G++ D K YT L+     +G+VD     F
Sbjct: 927  NCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +E+ + G++P+   Y  +I+G  K+ ++ +A   Y  MR++ + PD   +N+L+   G +
Sbjct: 987  NELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLA 1046

Query: 211  GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            G V++A  +  E+  ++  ++PD  T  AL++  + +   + A  VYK
Sbjct: 1047 GMVEQAKRMYEEL--QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYK 1092



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 126/323 (39%), Gaps = 2/323 (0%)

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KV+ M  VF  M    I  ++ TY  +    +  G + +       MR      +   +N
Sbjct: 137 KVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYN 196

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    QSG    A +V   M +E   + P   T  ALM A       +    + K + 
Sbjct: 197 GLIHLLIQSGFCGEALEVYRRMVSE--GLKPSLKTYSALMVALGKKRDSEMVMVLLKEME 254

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              ++     +TI I    + G  + A  ++  M  +G  PD V  + LID   +AG++E
Sbjct: 255 DLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLE 314

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E+  + K  G     + Y +L+   ++  +     E +  M++    P V T   L+
Sbjct: 315 NAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILV 374

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC      +       M+  G+ PN  TY+ L+    R   +E  L LL   +  GV 
Sbjct: 375 DVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQ 434

Query: 442 PNLVMFKCIIGMCSRRYEKARTL 464
           P    +   I    +  E  + +
Sbjct: 435 PTAYTYNIFIDYFGKSGETGKAV 457



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 310 LIDFAGHAGKVE---AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           +++F     KVE   A FE +Q+   + I   + +Y ++  A S     ++   +   M+
Sbjct: 128 MLEFLRVHDKVEDMAAVFEFMQK---KIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMR 184

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
                    + N LI  L       + +EV   M S GL P+  TYS L+VA  +K D E
Sbjct: 185 KAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSE 244

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           + ++LL + ++ G+ PN+  F   I +  R
Sbjct: 245 MVMVLLKEMEDLGLRPNVYTFTICIRVLGR 274


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 215/449 (47%), Gaps = 16/449 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-L 86
           YN L+    R G++     +L+ M+  G+      Y       C++ K ++EAF  ++ +
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRT-KGVEEAFDLYEGM 265

Query: 87  VPNPTL---STFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           V N  L    T + L++ +C   + SE A+ + R + + G   +   Y TLI + AK+G+
Sbjct: 266 VRNGVLLDVVTLSALVAGLCRDGRFSE-AYALFREMDKVGAAPNHVTYCTLIDSLAKAGR 324

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
              +  +  EMV+ G+  ++ TY AL+D   K G+  +         S N+ P+ V +  
Sbjct: 325 GKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTV 384

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI A  ++  VD A  VL EM  E   + P+ +T  +++      G +D+A E  +M+ +
Sbjct: 385 LIDALCKAHNVDEAEQVLLEM--EEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKE 442

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I      Y   I+   +    + A  VY DM  +GV  ++  + +L++     GK+E 
Sbjct: 443 RGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEE 502

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  + ++A   G+S+  ++Y++L+     A +   A +  + +    + P     N  I 
Sbjct: 503 AMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFIN 562

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC   +  +    L++M+++GL P+  TY+ ++V+  RK +    L LL + K   + P
Sbjct: 563 CLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKP 622

Query: 443 NLVMFKCIIG--MCSRRYEKAR-TLNEHV 468
           NL+ +  ++     +   EKA+  LNE V
Sbjct: 623 NLITYNTLVAGLFGTGAVEKAKYLLNEMV 651



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 195/461 (42%), Gaps = 46/461 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFF---KL 86
           + L + GR  E + LL +M  +G++ MD V +    +    Q     +K+  RF     L
Sbjct: 317 DSLAKAGRGKELLSLLGEMVSRGVV-MDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL 375

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            PN    T+ +L+     + + + A QVL  ++E  +  +   ++++I    K G +D  
Sbjct: 376 SPNGV--TYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E    M   GI PNV TYG LIDG  K      A   Y  M  + VK ++ + ++L+  
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG 493

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             Q+G ++ A  +  +  A    +  DH+    L+     AG +  A +  + +   N+ 
Sbjct: 494 LRQNGKIEEAMALFKD--ASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNML 551

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
               VY + INC    G ++ A S   +M   G+ PD+   + +I      G+   A ++
Sbjct: 552 PDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611

Query: 327 LQEAKNQGISVGIISYSSLMG-----------------------------------ACSN 351
           L E K   I   +I+Y++L+                                    ACS 
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQ 671

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           ++     L+++E M +  L   ++  N L+  LC      K   VL +M   G+ P+TIT
Sbjct: 672 SRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTIT 731

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           ++ L++   +   ++      +Q     + PN+  F  ++G
Sbjct: 732 FNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 178/422 (42%), Gaps = 21/422 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G+I E + L +D    GL  +D V +    +       +  AF+F + + +   
Sbjct: 492 NGLRQNGKIEEAMALFKDASGSGL-SLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNM 550

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P    +N+ ++ +C   K  E A   L  ++  GLK D   Y T+I +  + G+     
Sbjct: 551 LPDAVVYNVFINCLCMLGKFKE-AKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++ HEM  + I+PN+ TY  L+ G    G V KA      M S    P  +    ++ AC
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQAC 669

Query: 208 GQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            QS  +D   D+   M NA +H    D      L++     G   +A  V + +    I 
Sbjct: 670 SQSRRLDVILDIHEWMMNAGLHA---DITVYNTLLQVLCYHGMTRKATVVLEEMLGSGI- 725

Query: 267 GTPEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             P+  T    I  +C S   D  FA   Y  M  + + P+    + L+      G++  
Sbjct: 726 -APDTITFNALILGHCKSSHLDNAFA--TYAQMLHQNISPNIATFNTLLGGLESVGRIGE 782

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  +L E +  G+    ++Y  L        N  +A+ LY  M      P VST NALI+
Sbjct: 783 AGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALIS 842

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVI 441
                  + +  E+  DM+  G+ P + TY IL+    R ++  EV    L   KE G  
Sbjct: 843 DFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVK-KCLKDMKEKGFS 901

Query: 442 PN 443
           P+
Sbjct: 902 PS 903



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 150/343 (43%), Gaps = 2/343 (0%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E A  + +    +GL  D   YTTLI    K+G +   F+   E+++  + P+   Y   
Sbjct: 501 EEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVF 560

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I+     G+  +A      MR+  +KPD+  +N +I +  + G   +A  +L EM  ++ 
Sbjct: 561 INCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEM--KMS 618

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + P+ IT   L+      G V++A+ +   +       +   +   +  CSQ+   +  
Sbjct: 619 SIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVI 678

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             +++ M   G+  D    + L+    + G    A  +L+E    GI+   I++++L+  
Sbjct: 679 LDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILG 738

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              + +   A   Y  M    + P ++T N L+  L    ++ +   VL +M+  GL PN
Sbjct: 739 HCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPN 798

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +TY IL     ++ +    + L  +    G +P +  +  +I
Sbjct: 799 NLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 133/314 (42%), Gaps = 37/314 (11%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
           A   D+  A  V   +   GL  D   Y TL+    ++G+VDA   V   M  AG++PNV
Sbjct: 180 AGFGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNV 239

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY   I    +   V +AF  Y  M    V  D V  +AL+    + G    A+ +  E
Sbjct: 240 ATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFRE 299

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M+       P+H+T   L+ + A AG   R +E+                          
Sbjct: 300 MDKV--GAAPNHVTYCTLIDSLAKAG---RGKEL-------------------------- 328

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
                  S+  +M  +GV+ D V  +AL+D+ G  GK +   + L+ A +  +S   ++Y
Sbjct: 329 ------LSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTY 382

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           + L+ A   A N  +A ++   M+   + P V T +++I        L K  E    MK 
Sbjct: 383 TVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKE 442

Query: 403 LGLCPNTITYSILL 416
            G+ PN +TY  L+
Sbjct: 443 RGINPNVVTYGTLI 456



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 148/361 (40%), Gaps = 44/361 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    R+G  ++ + LL +M+   +      Y+     +  +    K  +   ++
Sbjct: 591 TYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEM 650

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V    +P+  T   ++  C+ S+  +    +   +  AGL AD  +Y TL+      G  
Sbjct: 651 VSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMT 710

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                V  EM+ +GI P+  T+ ALI G  K+  +  AF  Y  M  +N+ P+   FN L
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTL 770

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +      G +  A  VL EM  E   ++P+++T                          Y
Sbjct: 771 LGGLESVGRIGEAGTVLIEM--EKSGLEPNNLT--------------------------Y 802

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           +I        +A     Q+   E A  +Y +M  KG +P     +ALI     AG +  A
Sbjct: 803 DI--------LATGHGKQSNKVE-AMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQA 853

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E+ ++ + +G+     +Y  L+   S  +N  +  +  + MK     P+  T++ +  A
Sbjct: 854 KELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRA 913

Query: 384 L 384
            
Sbjct: 914 F 914



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 6/196 (3%)

Query: 273 TIAIN-CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           T+A N   +   D   A +V  +M K+GV  D V ++ L+  AG     +         +
Sbjct: 103 TVAYNILLAALSDHAHAPAVLAEMCKRGVPFDGVTVNTLL--AGLCRNGQVDAAAALADR 160

Query: 332 NQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             GI+  + S  +L +   +   +   AL + + M +  L   V   N L+   C   Q+
Sbjct: 161 AGGITPWMSSAGTLSLLDIAGFGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQV 220

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                VL  MK  G+ PN  TY+  +V   R   VE    L      +GV+ ++V    +
Sbjct: 221 DAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSAL 280

Query: 451 I-GMCSR-RYEKARTL 464
           + G+C   R+ +A  L
Sbjct: 281 VAGLCRDGRFSEAYAL 296


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 200/440 (45%), Gaps = 46/440 (10%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFR---------- 82
           G + + + L++DM+ KGL      Y++    +CK      ++K ++E             
Sbjct: 307 GELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVY 366

Query: 83  ------FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ----------------- 119
                 FFKL     + T N       S K S        L+Q                 
Sbjct: 367 TTLIHGFFKL---GHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHE 423

Query: 120 --EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
               GLK D   YTTLI    K+G++   F + +EMV  G+ PN+ TYGALIDG  K G+
Sbjct: 424 MISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           +  A      MR K ++ +  ++N+++    ++G +++A  ++ EM  EV  +DPD IT 
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM--EVAGIDPDAITY 541

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             ++ A    G +D+A ++ + +    ++ T   + + +N     G  E    +   M +
Sbjct: 542 TTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLE 601

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           KG++PD +  + L+        +    +I +  +NQG++    +Y+ L+     A+N ++
Sbjct: 602 KGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKE 661

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A  LY+ M      PTV++ NALI       ++ +  E+  +M+  GL  +   Y+  + 
Sbjct: 662 AWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVD 721

Query: 418 ACERKDDVEVGLMLLSQAKE 437
            C  + DVE+ L L  +A E
Sbjct: 722 MCYEEGDVEITLNLCDEAIE 741



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 223/488 (45%), Gaps = 23/488 (4%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPNP 90
           +  L+  G +SE   LL+ +   GL+      +A    +  + + I+ A + F +   + 
Sbjct: 197 FQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISW 256

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTTLITTCAKSGKVDAM 146
             +++N+++ S+C   K  E      RL+ +   ++   D   Y+T+I      G++   
Sbjct: 257 NTTSYNIIIYSLCRLGKVKEAH----RLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKA 312

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  +M   G++PN +TY ++I    K G+  +A      M S+ + PD VV+  LI  
Sbjct: 313 LKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHG 372

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G V  A     EM ++   + PD+IT   L++     G+V   + ++  +    +K
Sbjct: 373 FFKLGHVRTANKWFDEMLSK--KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLK 430

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                YT  I+   + G+   A S++++M + G+ P+ V   ALID     G+++ A E+
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANEL 490

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L E + +G+ + +  Y+S++     A N ++A++L + M+   + P   T   +I A C 
Sbjct: 491 LDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              + K  ++L +M   GL P  +T+++L+        +E G  LL    E G++P+ + 
Sbjct: 551 LGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAIT 610

Query: 447 FKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAI 494
           +  ++     R     T   +    N G     N +  L            A  +Y+E I
Sbjct: 611 YNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMI 670

Query: 495 VAGTIPTV 502
             G +PTV
Sbjct: 671 EKGYVPTV 678



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 120/268 (44%), Gaps = 7/268 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + G +    +LL++M +KGL     +Y++    +CK+   I++A +  K +     +P
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN-IEQAIKLMKEMEVAGIDP 536

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+  ++       D + A ++L+ + + GL+     +  L+      G ++    + 
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL 596

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M+  GI P+  TY  L+        +      Y  MR++ V PD   +N LI    ++
Sbjct: 597 GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKA 656

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             +  A+ +  EM  + +   P   +  AL+K      ++  ARE+++ +  + +    E
Sbjct: 657 RNLKEAWFLYKEMIEKGYV--PTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGE 714

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298
           +Y   ++ C + GD E   ++ D+  +K
Sbjct: 715 IYNFFVDMCYEEGDVEITLNLCDEAIEK 742


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 193/414 (46%), Gaps = 6/414 (1%)

Query: 41   ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100
            I + + L ++M +KGLL   K Y      +CK++K         K+  N     F   M 
Sbjct: 1032 IPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMI 1091

Query: 101  VCASSKD--SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
            + A  KD  +  A  +   +  AG+  D  +Y++L+    + G++    E F EM   GI
Sbjct: 1092 IDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGI 1151

Query: 159  EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
              +V+TY +LI G ++AG   +      +M  +   PD   F  LI    + G V  A  
Sbjct: 1152 SADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQ 1211

Query: 219  VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
            +L  M  +    +PD +T   LM      GQ++ A ++++ +    IK     Y I IN 
Sbjct: 1212 ILELMRHKGK--EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILING 1269

Query: 279  CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
              +    + A   +++M  KG+ P  V  + LI     +G+V  A ++  E +  G  + 
Sbjct: 1270 YCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLK 1329

Query: 339  IISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
            + +Y  L+ G C N  + ++A++L++ +K  + KP +   + L+  +C   +L +  +  
Sbjct: 1330 LSTYCVLLDGLCKNG-HLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQF 1388

Query: 398  SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             ++   GL P+TI Y+IL+     K  +   + LL Q +E G +P+ + F  II
Sbjct: 1389 DEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVII 1442



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 180/410 (43%), Gaps = 7/410 (1%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
            L + G  +E +D+  +M   G+L    VY +    +C+  + +KEA  FFK +    +S 
Sbjct: 1095 LCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGR-LKEALEFFKEMEGRGISA 1153

Query: 94   ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               T+N L+   + +   +     L L+ + G   D   +T LI    K GKV    ++ 
Sbjct: 1154 DVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQIL 1213

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
              M + G EP++ TY  L++G    GQ+  A   +  +  + +K +   +N LI    + 
Sbjct: 1214 ELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKD 1273

Query: 211  GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
              +D AF    EM  +   + P  +T   L+ A   +G+V  A++++  +          
Sbjct: 1274 QKIDEAFRFFEEMRPK--GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLS 1331

Query: 271  VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
             Y + ++   + G  E A  ++  + K    P+    S L+D    AGK+E A++   E 
Sbjct: 1332 TYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEI 1391

Query: 331  KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
               G+    I+Y+ L+    N     +A++L   M+     P   T N +I  L   +++
Sbjct: 1392 SKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKENEI 1451

Query: 391  PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
             + +++L +M++    P+    S+LL            L+ L  A + GV
Sbjct: 1452 HEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGV 1501



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 174/419 (41%), Gaps = 28/419 (6%)

Query: 130  YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
            +  L+ + AK G    +F ++ ++ + GI+P+++T   LI  C     V   FG +G   
Sbjct: 949  FNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFL 1008

Query: 190  SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
             +  +PD V    L+        +  A  +  EM  +   +  D  T G L+     A +
Sbjct: 1009 KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKK--GLLGDAKTYGILINGLCKARK 1066

Query: 250  VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
               A ++++ + K N KG    Y + I+   + G    A  ++ +M   G++PD V  S+
Sbjct: 1067 TGLAIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSS 1125

Query: 310  LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
            L+D     G+++ A E  +E + +GIS  + +Y+SL+   S A  W++       M    
Sbjct: 1126 LMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRG 1185

Query: 370  LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
              P   T   LI  LC   ++ +  ++L  M+  G  P+ +TY+ L+        +E   
Sbjct: 1186 FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDAT 1245

Query: 430  MLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 488
             L     + G+  N+  +  +I G C     K + ++E    F   RP+           
Sbjct: 1246 KLFESLADRGIKLNVFSYNILINGYC-----KDQKIDEAFRFFEEMRPK----------- 1289

Query: 489  VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
                    G  P+    + ++G L         ++L   +      LK S  C L+DG 
Sbjct: 1290 --------GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGL 1340



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 93/201 (46%), Gaps = 9/201 (4%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            SYN LI    +  +I E     E+M  KGL      Y+     +C+S + ++ A + F  
Sbjct: 1262 SYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGR-VRTAQKLFVE 1320

Query: 87   VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +        LST+ +L+     +   E A  + + +++   K + ++++ L+    ++GK
Sbjct: 1321 MQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGK 1380

Query: 143  VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            ++  ++ F E+   G+EP+   Y  LI+G    G +++A      M  K   PD + FN 
Sbjct: 1381 LEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNV 1440

Query: 203  LITACGQSGAVDRAFDVLAEM 223
            +I    +   +  A  +L EM
Sbjct: 1441 IIQNLLKENEIHEAIQLLEEM 1461



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 5/223 (2%)

Query: 236  TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYD 293
            T   L+ + A  G       +Y+ I+   I+  P++YT  I I+CC           V+ 
Sbjct: 948  TFNHLLASVAKLGYYSTVFPMYRKINDVGIQ--PDLYTLNILIHCCCSLRAVGCGFGVFG 1005

Query: 294  DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
               K+G  PD V ++ L+        +  A ++  E   +G+     +Y  L+     A+
Sbjct: 1006 GFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKAR 1065

Query: 354  NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
                A++L+E MK    K  V T   +I ALC      + +++ S+M   G+ P+ + YS
Sbjct: 1066 KTGLAIKLHEKMKG-NCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYS 1124

Query: 414  ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             L+    R   ++  L    + +  G+  ++  +  +I   SR
Sbjct: 1125 SLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSR 1167


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 218/489 (44%), Gaps = 29/489 (5%)

Query: 5   GKNMLQFPYP------NGKHANYAH--DVSEQLHSYNRLIRQGRISECIDLLEDMERKGL 56
           G  ML  P P      N  H+   H   + + L S+NRL+        +D       K L
Sbjct: 9   GACMLSPPLPFFSSSQNNFHSKSLHFNTLDDALSSFNRLLHMHPPPSIVDF-----AKLL 63

Query: 57  LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
             + K+ H   ++   S     ++F     VP P + T N+L++          AF VL 
Sbjct: 64  TSIAKMKH---YSTVLSLSTQMDSFG----VP-PNVYTLNILINSFCHLNRVGFAFSVLA 115

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
            + + G + D   +TTLI      GK+     +F +M++ G +PNV TYG LI+G  K G
Sbjct: 116 KILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVG 175

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
             + A      M   N +PD V++ ++I +  +   V  AF++ ++M  +   + PD  T
Sbjct: 176 NTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ--GISPDIFT 233

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +L+ A  N  +      +   +    I     +++  ++   + G    A  + D M 
Sbjct: 234 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 293

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           ++GV PD V  + L+D      +++ A ++      +G +  +ISY++L+          
Sbjct: 294 QRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKID 353

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           KA+ L+E M   +  P   T N L+  LC   +L   + +  +M + G  P+ +TYSILL
Sbjct: 354 KAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILL 413

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSG 474
            +  +   +E  + LL   +   + P++ ++  II GMC +   E AR L  + LS    
Sbjct: 414 DSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSN-LSSKGL 472

Query: 475 RPQIENKWT 483
            P +   WT
Sbjct: 473 HPSV---WT 478



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 166/348 (47%), Gaps = 10/348 (2%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K I E F+       P + T+  L++      ++  A ++LR +++   + D  +YT++I
Sbjct: 151 KMIDEGFQ-------PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSII 203

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +  K  +V   F +F +MV  GI P++ TY +L+       +          M +  + 
Sbjct: 204 DSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKIL 263

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V+F+ ++ A  + G V  A +++  M      V+PD +T   LM       ++D A 
Sbjct: 264 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQR--GVEPDVVTYTTLMDGHCLQSEMDEAV 321

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           +V+ M+ +         YT  IN   +    + A  ++++M +K  IPD    + L+   
Sbjct: 322 KVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGL 381

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
            H G+++ A  +  E   +G    +++YS L+ +     + ++A+ L + +++  L P +
Sbjct: 382 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDI 441

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER 421
              N +I  +C   +L    ++ S++ S GL P+  TY+I++   C+R
Sbjct: 442 QVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKR 489



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 159/391 (40%), Gaps = 38/391 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + G  S  I LL  ME+        +Y +   ++CK ++ + EAF  F  +     
Sbjct: 169 NGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQ-VTEAFNLFSQMVGQGI 227

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+  L+    +  + +    +L  +  + +  D  +++T++    K GKV    E
Sbjct: 228 SPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHE 287

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M+  G+EP+V TY  L+DG     ++ +A   + +M  K   PD + +  LI    
Sbjct: 288 IVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYC 347

Query: 209 QSGAVDRAFDVLAEM------------NAEVHPV---------------------DPDHI 235
           +   +D+A  +  EM            N  +H +                      PD +
Sbjct: 348 KIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLV 407

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+ +      ++ A  + K I   N+    +VY I I+   + G+ E A  ++ ++
Sbjct: 408 TYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNL 467

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
           + KG+ P     + +I      G +  A ++  E      S    +Y+++          
Sbjct: 468 SSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNET 527

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCD 386
            +A++L E M +      VST   L+  L D
Sbjct: 528 LRAIQLLEEMLARGFSADVSTTTLLVEMLSD 558



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 3/220 (1%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +A DV       N   +  +I + + L E+M RK  +   K Y+     +C   +     
Sbjct: 332 FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAI 391

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F ++V     P L T+++L+     +   E A  +L+ ++ + L  D ++Y  +I   
Sbjct: 392 ALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGM 451

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            ++G+++A  ++F  + + G+ P+V TY  +I G  K G + +A   +  M   +  PD 
Sbjct: 452 CRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDG 511

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
             +N +     Q+    RA  +L EM A     D    T+
Sbjct: 512 CTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTL 551


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 203/430 (47%), Gaps = 13/430 (3%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           SYN LI      G  +  + + + ME+ G       Y+    ++CK  + + +A  F   
Sbjct: 200 SYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCK-DRLVNDAMDFLSE 258

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              + +P   ++  +++  +C   + +E A ++ + +++ G K D   Y  +I +  K  
Sbjct: 259 MVGRGIPPDAITYNSIVHGLCCLGQLNE-ATRLFKRMEQNGCKPDVVTYNIIIDSLYKDR 317

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            V+   +   EMV+ GI P+V TY  ++ G    GQ+ +A   +  M  K  KPD V +N
Sbjct: 318 LVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYN 377

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I +  +   V+ A + L+EM     P  P+ +T   ++    N GQ+D A +++K + 
Sbjct: 378 TIIDSLCKDRLVNDAMEFLSEMVDRGIP--PNAVTYSTILHGFCNLGQLDEATQLFKEMV 435

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
             N+      ++I ++   Q G    A  V++ MT+KGV P+    +AL++      K+ 
Sbjct: 436 GRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMN 495

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A ++ +    +G +  + SY+ L+    N++   KA  L   M   KL P   T N ++
Sbjct: 496 EARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIM 555

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   +L    E+   M S G+ P  +TYSILL    +   ++  L L    KE  + 
Sbjct: 556 KGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLE 615

Query: 442 PNLVMFKCII 451
           P+++++  +I
Sbjct: 616 PDIILYTILI 625



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 176/378 (46%), Gaps = 4/378 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+ + N+L++        + A  V   + + G++ D   +TTLI      GK+    E++
Sbjct: 127 TVYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELY 186

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           +EMV +G EP+V +Y  LI+G   +G    A   +  M     KP+ V +N +I +  + 
Sbjct: 187 NEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKD 246

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             V+ A D L+EM     P  PD IT  +++      GQ++ A  ++K + +   K    
Sbjct: 247 RLVNDAMDFLSEMVGRGIP--PDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVV 304

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y I I+   +      A     +M  +G+ PD V  + ++    + G++  A  + ++ 
Sbjct: 305 TYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKM 364

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           + +G    +++Y++++ +    +    A+E    M    + P   T + ++   C+  QL
Sbjct: 365 EQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQL 424

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            +  ++  +M    + PNT+T+SIL+    ++  V     +     E GV PN+  +  +
Sbjct: 425 DEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNAL 484

Query: 451 I-GMCSR-RYEKARTLNE 466
           + G C R +  +AR + E
Sbjct: 485 MNGYCLRCKMNEARKVFE 502



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 168/389 (43%), Gaps = 12/389 (3%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + FKL   P + TF  L++   +    + A ++   +  +G + D   Y TLI     SG
Sbjct: 153 KMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSG 212

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
             +    VF +M   G +PNV TY  +ID   K   V  A      M  + + PD + +N
Sbjct: 213 NTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYN 272

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +++      G ++ A  +   M  E +   PD +T   ++ +      V+ A +    + 
Sbjct: 273 SIVHGLCCLGQLNEATRLFKRM--EQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMV 330

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              I      YT  ++     G    A  ++  M +KG  PD V  + +ID       V 
Sbjct: 331 DQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVN 390

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E L E  ++GI    ++YS+++    N     +A +L++ M    + P   T + L+
Sbjct: 391 DAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILV 450

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL----VACERKDDVEVGLMLLSQAKE 437
             LC    + +   V   M   G+ PN  TY+ L+    + C+  +  +V  +++ +   
Sbjct: 451 DGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGK--- 507

Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTL 464
            G  P+L  +  +I G C SRR +KA+ L
Sbjct: 508 -GCAPDLHSYNILINGYCNSRRMDKAKAL 535



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 154/336 (45%), Gaps = 9/336 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVPNPTLS 93
           G+++E I L + ME+KG       Y+    ++CK  + + +A  F      + +P   ++
Sbjct: 352 GQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCK-DRLVNDAMEFLSEMVDRGIPPNAVT 410

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
              +L   C   +  E A Q+ + +    +  +   ++ L+    + G V     VF  M
Sbjct: 411 YSTILHGFCNLGQLDE-ATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETM 469

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G+EPN++TY AL++G     ++ +A   + IM  K   PD   +N LI     S  +
Sbjct: 470 TEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRM 529

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D+A  +L +M+  V  + P+ +T   +MK     G++  A+E++K +    +  T   Y+
Sbjct: 530 DKAKALLTQMS--VKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYS 587

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I +N   + G  + A  ++  M +K + PD +  + LI+     GK+E A  +  +    
Sbjct: 588 ILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSAD 647

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           GI     +Y+ ++          +A EL+   K +K
Sbjct: 648 GIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMMK 683



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 2/240 (0%)

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           +VD A      M A ++P  P  +  G  + + A   Q      +   +  + +  T   
Sbjct: 73  SVDDALASFYRM-ARMNP-RPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYS 130

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
             I INC  +    +FA SV+  M K G+ PD +  + LI+   + GK++ A E+  E  
Sbjct: 131 LNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMV 190

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G    +ISY++L+    N+ N   A+ +++ M+    KP V T N +I +LC    + 
Sbjct: 191 RSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVN 250

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             M+ LS+M   G+ P+ ITY+ ++        +     L  + +++G  P++V +  II
Sbjct: 251 DAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIII 310



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 11/215 (5%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----K 75
           V   +++YN L+     + +++E   + E M  KG       Y+      C S+     K
Sbjct: 474 VEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAK 533

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+       KL PN    T+N +M           A ++ + +  +G+      Y+ L+ 
Sbjct: 534 ALLTQMSVKKLTPNTV--TYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLN 591

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K G +D   ++F  M    +EP++  Y  LI+G    G++  A G +  + +  ++P
Sbjct: 592 GLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQP 651

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
               +N +I    + G  D A+++  +     H V
Sbjct: 652 PGRTYNVMIKGLLKEGLSDEAYELFRKWKMMKHNV 686


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 202/465 (43%), Gaps = 46/465 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN LI    +  ++     LL++M+  GL      Y       C+ Q  +  A++ F+ 
Sbjct: 163 TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR-QTKVDTAYKLFRQ 221

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +V N   P L T+N L+S    +   + A+++L  ++E GL+ D   Y TL+    K+GK
Sbjct: 222 MVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 281

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D   +VF +  N    P+V  Y  LI G  KAG++ +A   +  MR  + +PD V F A
Sbjct: 282 IDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTA 341

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L+    +   +  A  VL  M  E     P+ IT  +L+      GQV  A+EV+K +  
Sbjct: 342 LMDGLCKGDRLQEAQQVLETM--EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIV 399

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I+     Y   I+    T   + A  + ++MT  G +PD +  + LID     G+   
Sbjct: 400 RGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPE 459

Query: 323 AFEILQEAKNQGISVGIISYSSLMGA-CS------------------------------- 350
           A  +  + K +  +  +I+YS L+G  C                                
Sbjct: 460 ANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVE 519

Query: 351 ---NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
              NA     A  L E M +    P V T  +L+   C   ++ +   VL  M   G  P
Sbjct: 520 GYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQP 579

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           N +TY+ L+ A  R     V   LL +   +GV PN++ ++ +IG
Sbjct: 580 NVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIG 624



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 126/560 (22%), Positives = 244/560 (43%), Gaps = 32/560 (5%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYH 64
           L+F +   K   + H+V    ++YNRL    +R  RI E   +L++    G+      Y 
Sbjct: 8   LRFFHWASKQQGFDHNV----YTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYA 63

Query: 65  ARFFNVCKS---QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
                +CKS    KA +      +  P P  + +N ++     ++++  A    R ++  
Sbjct: 64  VVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME-- 121

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
             + +   +T +I    K+ ++      F +M   G  PN  TY  LI+G  K  +V +A
Sbjct: 122 -CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRA 180

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
           +     M+   + P+ V ++ +I    +   VD A+ +  +M    +   P+ +T   L+
Sbjct: 181 YLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE--NGCMPNLVTYNTLL 238

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
                 G +D A E+   + +  ++     Y   +    +TG  + A  V++D +     
Sbjct: 239 SGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCP 298

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD V  S LI     AG+++ A ++ ++ +       ++++++LM         Q+A ++
Sbjct: 299 PDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQV 358

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            E M+     P V T ++LI  LC   Q+    EV   M   G+ PN +TY+ L+     
Sbjct: 359 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCM 418

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYE--------KARTLNEHVLS 470
            + V+  L+L+ +    G +P+++ +  +I G+C   R  E        KA+  N  V++
Sbjct: 419 TNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVIT 478

Query: 471 FN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 527
           ++    G  ++E     +A  ++ + +    +P V   S ++         D  ERL+E 
Sbjct: 479 YSCLIGGFCKLER--IDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEE 536

Query: 528 LGVSADALKRSNLCSLIDGF 547
           +  S  +       SL+DGF
Sbjct: 537 MVASDCSPDVYTYTSLVDGF 556



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 190/422 (45%), Gaps = 17/422 (4%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L +YN L+    R G + E  +LL++M  +GL      Y      +CK+ K I  A + 
Sbjct: 230 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK-IDMALKV 288

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F+   N    P +  ++ L++    +   + A ++   ++E   + D   +T L+    K
Sbjct: 289 FEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 348

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
             ++    +V   M +    PNV TY +LIDG  K GQV  A   +  M  + ++P+ V 
Sbjct: 349 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVT 408

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-K 258
           +N+LI     +  VD A  ++ EM A      PD IT   L+      G+   A  ++  
Sbjct: 409 YNSLIHGFCMTNGVDSALLLMEEMTAT--GCLPDIITYNTLIDGLCKTGRAPEANRLFGD 466

Query: 259 MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           M  K+     P+V  Y+  I    +    + A +++DDM K+ V+PD V  S L++   +
Sbjct: 467 MKAKF---CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCN 523

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           AG V+ A  +L+E      S  + +Y+SL+          +A  + + M     +P V T
Sbjct: 524 AGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVT 583

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
             ALI A C   +      +L +M   G+ PN ITY  L+       D+E    +L + +
Sbjct: 584 YTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLE 643

Query: 437 ED 438
            D
Sbjct: 644 RD 645



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 182/426 (42%), Gaps = 49/426 (11%)

Query: 20  NYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQ 74
           N   D    + +Y+ LI    + GR+ E   L E M R+   + D V + A    +CK  
Sbjct: 292 NSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKM-RENSCEPDVVTFTALMDGLCKGD 350

Query: 75  KAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           + ++EA +  + + +    P + T++ L+     +     A +V + +   G++ +   Y
Sbjct: 351 R-LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTY 409

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            +LI     +  VD+   +  EM   G  P++ TY  LIDG  K G+  +A   +G M++
Sbjct: 410 NSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKA 469

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           K   PD + ++ LI    +   +D A  +  +M  +   V PD +T   L++   NAG V
Sbjct: 470 KFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA--VLPDVVTFSTLVEGYCNAGLV 527

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D A  + + +   +       YT  ++   + G    A  V   M K+G  P+ V  +AL
Sbjct: 528 DDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTAL 587

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA------------ 358
           ID    AGK   A+ +L+E    G+   +I+Y SL+G      + ++A            
Sbjct: 588 IDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDEN 647

Query: 359 ------------------------LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
                                   LEL E +K     P      ALI  LC G +L K M
Sbjct: 648 CKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAM 707

Query: 395 EVLSDM 400
           EVL +M
Sbjct: 708 EVLEEM 713


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 199/440 (45%), Gaps = 46/440 (10%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFR---------- 82
           G + + + L++DM+ KGL      Y++    +CK      ++K ++E             
Sbjct: 307 GELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVY 366

Query: 83  ------FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ----------------- 119
                 FFKL     + T N       S K S        L+Q                 
Sbjct: 367 TTLIHGFFKL---GHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHE 423

Query: 120 --EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
               GLK D   YTTLI    K+G++   F + +EMV  G+ PN+ TYGALIDG  K G+
Sbjct: 424 MISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGE 483

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           +  A      MR K ++ +  ++N+++    ++G +++A  ++ EM  EV  +DPD IT 
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM--EVAGIDPDAITY 541

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             ++ A    G +D+A ++ + +    ++ T   + + +N     G  E    +   M +
Sbjct: 542 TTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLE 601

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           KG++PD +  + L+        +    +I +  +NQG++    +Y+ L+     A+N ++
Sbjct: 602 KGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKE 661

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A  LY+ M      PTV++ NALI       +  +  E+  +M+  GL  +   Y+  + 
Sbjct: 662 AWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVD 721

Query: 418 ACERKDDVEVGLMLLSQAKE 437
            C  + DVE+ L L  +A E
Sbjct: 722 MCYEEGDVEITLNLCDEAIE 741



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/488 (23%), Positives = 223/488 (45%), Gaps = 23/488 (4%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPNP 90
           +  L+  G +SE   LL+ +   GL+      +A    +  + + I+ A + F +   + 
Sbjct: 197 FQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISW 256

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTTLITTCAKSGKVDAM 146
             +++N+++ S+C   K  E      RL+ +   ++   D   Y+T+I      G++   
Sbjct: 257 NTTSYNIIIYSLCRLGKVKEAH----RLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKA 312

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  +M   G++PN +TY ++I    K G+  +A      M S+ + PD VV+  LI  
Sbjct: 313 LKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHG 372

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G V  A     EM ++   + PD+IT   L++     G+V   + ++  +    +K
Sbjct: 373 FFKLGHVRTANKWFDEMLSK--KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLK 430

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                YT  I+   + G+   A S++++M + G+ P+ V   ALID     G+++ A E+
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANEL 490

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L E + +G+ + +  Y+S++     A N ++A++L + M+   + P   T   +I A C 
Sbjct: 491 LDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCR 550

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              + K  ++L +M   GL P  +T+++L+        +E G  LL    E G++P+ + 
Sbjct: 551 LGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAIT 610

Query: 447 FKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAI 494
           +  ++     R     T   +    N G     N +  L            A  +Y+E I
Sbjct: 611 YNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMI 670

Query: 495 VAGTIPTV 502
             G +PTV
Sbjct: 671 EKGYVPTV 678



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 119/268 (44%), Gaps = 7/268 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + G +    +LL++M +KGL     +Y++    +CK+   I++A +  K +     +P
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN-IEQAIKLMKEMEVAGIDP 536

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+  ++       D + A ++L+ + + GL+     +  L+      G ++    + 
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL 596

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M+  GI P+  TY  L+        +      Y  MR++ V PD   +N LI    ++
Sbjct: 597 GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKA 656

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             +  A+ +  EM  + +   P   +  AL+K      +   ARE+++ +  + +    E
Sbjct: 657 RNLKEAWFLYKEMIEKGYV--PTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGE 714

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298
           +Y   ++ C + GD E   ++ D+  +K
Sbjct: 715 IYNFFVDMCYEEGDVEITLNLCDEAIEK 742


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 230/514 (44%), Gaps = 37/514 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  L +Y+ LI    R GR+         + + G    + V +     +C +++ ++EA
Sbjct: 90  VTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKR-LREA 148

Query: 81  F-----RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTT 132
                 R  +L   P + ++N L+    + K +E A ++L ++ ++  ++   +   Y T
Sbjct: 149 MDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAT 208

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           +I      G+VD  + +F EM++ GI+PNV TY  +IDG  KA  V +A G +  M  K 
Sbjct: 209 VINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKG 268

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           VKPD   +N LI      G       +L EM+A  H + PD  T G+L+    N G+   
Sbjct: 269 VKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSA--HGLKPDCYTYGSLLNYLCNNGRCRE 326

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           AR  +  + +  IK    +Y I I+  +  G       + + M + G+ PD    + +  
Sbjct: 327 ARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFT 386

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                  ++ A  I  + K QG+S  ++++ +L+ A         A+  +  M +  + P
Sbjct: 387 AYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAP 446

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            +   N+L+  LC  D+  K  E   +M + G+ P+ + ++ +L     K  V     L+
Sbjct: 447 NIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI 506

Query: 433 SQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM- 488
              +  G  P+++ +  +IG   +  R  E A++L+  V+     +P   ++WT   L+ 
Sbjct: 507 DLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLD--VMLSVGLKP---DEWTYNTLLH 561

Query: 489 -------------VYREAIVAGTIPTVEVVSKVL 509
                        V+RE +  G  P V   S +L
Sbjct: 562 GYCRAGRIDDAYGVFREMLRNGITPGVVTYSTIL 595



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 193/428 (45%), Gaps = 10/428 (2%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G+  E + +LE+M   GL      Y +    +C + +  +  F F  +
Sbjct: 275 TYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSM 334

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +     P ++ + +L+   A+         +L L+ E GL  D  ++  + T  AK   +
Sbjct: 335 IRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMI 394

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D    +F++M   G+ P+V  +GALID   K G+V  A   +  M ++ V P+  VFN+L
Sbjct: 395 DEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSL 454

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +         ++A +   EM  +   + PD +    ++      GQV +A+ +  ++ + 
Sbjct: 455 VYGLCTVDKWEKAKEFYFEMLNQ--GIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERV 512

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             +     YT  I      G  + A    D M   G+ PDE   + L+     AG+++ A
Sbjct: 513 GTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDA 572

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           + + +E    GI+ G+++YS+++      + + +A ELY +M +   +  +   N ++  
Sbjct: 573 YGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNG 632

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L   + + +  ++   + S        T++I++ A  +    E  + L +     G++P+
Sbjct: 633 LSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPD 692

Query: 444 LVMFKCII 451
           +  + C+I
Sbjct: 693 VFTY-CLI 699



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 109/497 (21%), Positives = 197/497 (39%), Gaps = 55/497 (11%)

Query: 22  AHDVSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH +    ++Y    N L   GR  E     + M RKG+     +Y     +   ++ A+
Sbjct: 301 AHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIY-GILIHGYATKGAL 359

Query: 78  KEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            E      L+    LS     FN++ +  A     + A  +   +++ GL  D   +  L
Sbjct: 360 SEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGAL 419

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    K G+VD     F++M+N G+ PN+  + +L+ G     +  KA   Y  M ++ +
Sbjct: 420 IDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGI 479

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           +PD V FN ++      G V +A  ++  M  E     PD I+   L+      G++D A
Sbjct: 480 RPDVVFFNTILCNLCTKGQVMKAQRLIDLM--ERVGTRPDVISYTTLIGGHCLVGRIDEA 537

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312
            +   ++    +K     Y   ++   + G  + A  V+ +M + G+ P  V  S ++  
Sbjct: 538 AKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHG 597

Query: 313 -FAGH--------------AGK-------------------VEAAFEILQEAKNQGISVG 338
            F                 +GK                   V+ AF++ Q   ++   + 
Sbjct: 598 LFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLE 657

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           I +++ ++GA   +   + A+ L+  + S  L P V T   +   L +   L +  ++ S
Sbjct: 658 ITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFS 717

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-R 457
            M+  G  PN+   + L+     + D+      LS+  E            +I + SR  
Sbjct: 718 AMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLISLLSRDE 777

Query: 458 Y--------EKARTLNE 466
           Y        EK R LNE
Sbjct: 778 YHHHATSLPEKYRVLNE 794


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 197/426 (46%), Gaps = 47/426 (11%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++ +N+++     + D+  A ++ R  +   G+      Y T+I    KS  + A  E+F
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            E+V  G  P+V TY  LID   KAG + +A   +G M S+   P+ V ++ LI    + 
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D A +++ EM  +   V P+ IT  + +           A E+ + +   +++ +P+
Sbjct: 121 GRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPD 180

Query: 271 VYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             T +  I+   + G  + ACSV+DDM   G +P+ +  +AL++    A K+E A  +++
Sbjct: 181 TVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIE 240

Query: 329 EAKNQGISVGIISYSSLM-----------------------------------------G 347
              ++G++  +I+YS L+                                         G
Sbjct: 241 SMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAG 300

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           AC  A N+++A  L+E M +  L+P V T  ALI  LC   Q+    ++L  M +LG+ P
Sbjct: 301 AC-KAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPP 359

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLN 465
           N +TY+ L+    +   +E     L +    G +P+ + +  ++  +C + R + A  L 
Sbjct: 360 NVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLV 419

Query: 466 EHVLSF 471
             + SF
Sbjct: 420 SELKSF 425



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 206/469 (43%), Gaps = 53/469 (11%)

Query: 35  LIRQGRISECIDLLE-DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NP 90
           L R G  +  +++   +M R G+      Y+     +CKS         F +LV    +P
Sbjct: 11  LCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHP 70

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T+N L+     + D E A ++   +   G   +   Y+ LI    K G++D   E+ 
Sbjct: 71  DVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELI 130

Query: 151 HEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMR--SKNVKPDRVVFNALITA 206
            EM     +  PN+ TY + +DG  K    A+A      +R  S  V PD V F+ LI  
Sbjct: 131 QEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDG 190

Query: 207 CGQSGAVDRAFDVLAEM------------NAEVHP---------------------VDPD 233
             + G +D A  V  +M            NA V+                      V PD
Sbjct: 191 LCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPD 250

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV-------YTIAINCCSQTGDW 285
            IT   L+ A   A +VD A E   ++H    +G TP V       + I I    + G++
Sbjct: 251 VITYSVLVDAFCKASRVDEALE---LLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNF 307

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           E A +++++M  K + PD +   ALID    AG+VEAA +IL    N G+   +++Y++L
Sbjct: 308 EQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNAL 367

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +     +   ++A +  E M S    P   T  +L+ ALC   +    ++++S++KS G 
Sbjct: 368 VHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGW 427

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF-KCIIGM 453
            P+T+TY+IL+    +    E  + +L +    G  P+   F  C  G+
Sbjct: 428 DPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGL 476


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 204/412 (49%), Gaps = 15/412 (3%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RISE + L++ M   G     +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVAKGCQPDLVTY 224

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            ++++      D++ AF +L  +++  L+    +YTT+I    K+  +D    +F EM  
Sbjct: 225 GVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMET 284

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            GI PNV TY +LI      G+ + A      M  + + PD   F+ALI A  + G +  
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEV--Y 272
           A  +  EM      +DP  +T  +L+       ++D A+++++ M+ K+     P+V  Y
Sbjct: 345 AEKLYDEMVK--RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF---PDVVSY 399

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +  I    +    +    ++ +M+++G++ + V  + LI     AG  + A EI +E  +
Sbjct: 400 STLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVS 459

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            G+   I++Y++L+ G C N K  +KA+ ++E+++  K++PT+ T N +I  +C   ++ 
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
              ++  ++   G+ P+ + Y+ ++    RK   E    L  + KEDG +PN
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 170/369 (46%), Gaps = 5/369 (1%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P   TFN L+  +   +K SE    + R+V + G + D   Y  ++    K G  D  F 
Sbjct: 184 PNTVTFNTLIHGLFLHNKASEAVALIDRMVAK-GCQPDLVTYGVVVNGLCKRGDTDLAFI 242

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           + ++M    +EP V  Y  +IDG  K   +  A   +  M +K ++P+ V +++LI+   
Sbjct: 243 LLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLC 302

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G    A  +L++M      ++PD  T  AL+ A    G++  A ++Y  + K +I  +
Sbjct: 303 NYGRWSDASRLLSDMIE--RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+  IN        + A  +++ M  K   PD V  S LI     A +V+   E+ +
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFR 420

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   +G+    ++Y++L+     A +   A E+++ M S  + P + T N L+  LC   
Sbjct: 421 EMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L K M V   ++   + P   TY+I++    +   VE G  L       GV P++V + 
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYN 540

Query: 449 CII-GMCSR 456
            +I G C +
Sbjct: 541 TMISGFCRK 549



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 171/377 (45%), Gaps = 4/377 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+++L++          A  VL  + + G + +    ++L+     S ++     +  +M
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G +PN  T+  LI G     + ++A      M +K  +PD V +  ++    + G  
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D AF +L +M  E   ++P  +    ++        +D A  ++K +    I+     Y+
Sbjct: 238 DLAFILLNKM--EQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYS 295

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+C    G W  A  +  DM ++ + PD    SALID     GK+  A ++  E   +
Sbjct: 296 SLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 355

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            I   I++YSSL+          +A +++E M S    P V + + LI   C   ++ + 
Sbjct: 356 SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEG 415

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
           ME+  +M   GL  NT+TY+ L+    +  D ++   +  +   DGV PN++ +  ++ G
Sbjct: 416 MELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 475

Query: 453 MCSR-RYEKARTLNEHV 468
           +C   + EKA  + E++
Sbjct: 476 LCKNGKLEKAMVVFEYL 492



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 179/388 (46%), Gaps = 9/388 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G       LL  ME+  L     +Y      +CK+ K + +A   FK +     
Sbjct: 229 NGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKN-KHMDDALNLFKEMETKGI 287

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T++ L+S   +      A ++L  + E  +  D   ++ LI    K GK+    +
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 347

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ EMV   I+P++ TY +LI+G     ++ +A   +  M SK+  PD V ++ LI    
Sbjct: 348 LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFC 407

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++  VD   ++  EM+     +  + +T   L++    AG  D A+E++K +    +   
Sbjct: 408 KAKRVDEGMELFREMSQ--RGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPN 465

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++   + G  E A  V++ + +  + P     + +I+    AGKVE  +++  
Sbjct: 466 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 525

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 387
               +G+   +++Y++++       + ++A  L++ MK     P     N LI A L DG
Sbjct: 526 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 585

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           D+   + E++ +M+S G   +  T  ++
Sbjct: 586 DR-EASAELIKEMRSCGFAGDASTIGLV 612



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 115/272 (42%), Gaps = 13/272 (4%)

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A  +  EM  +  P  P  I    L+ A A   + D    + + +    +      Y
Sbjct: 62  LDDAVALFGEM-VKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTY 119

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +I INC  +      A +V   M K G  P+ V LS+L++   H+ ++  A  ++ +   
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G     +++++L+          +A+ L + M +   +P + T   ++  LC       
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
              +L+ M+   L P  + Y+ ++    +   ++  L L  + +  G+ PN+V +  +I 
Sbjct: 240 AFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299

Query: 453 -MCSR-RYEKA---------RTLNEHVLSFNS 473
            +C+  R+  A         R +N  V +F++
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 102/238 (42%), Gaps = 14/238 (5%)

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A +++ +M K    P  +  S L+       K +    + ++ +N G+     +YS L+ 
Sbjct: 65  AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILIN 124

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                     AL +   M  +  +P + T+++L+   C   ++ + + ++  M   G  P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 456
           NT+T++ L+      +     + L+ +    G  P+LV +  ++ G+C R          
Sbjct: 185 NTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILL 244

Query: 457 -RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
            + E+ + L   VL + +    + +NK    AL +++E    G  P V   S ++ CL
Sbjct: 245 NKMEQGK-LEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 121/468 (25%), Positives = 221/468 (47%), Gaps = 16/468 (3%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++ L  ++R  R G   E + LLE M RKG  + D +   +      + + I +A R  +
Sbjct: 90  TQMLKIFHRSCRSGNYIESLHLLETMVRKG-YNPDVILCTKLIKGFFTLRNIPKAVRVME 148

Query: 86  LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P +  +N L++        + A +VL  ++      D   Y  +I +    GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D   +V +++++   +P V TY  LI+     G V +A      M S+ +KPD   +N 
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I    + G VDRAF+++   N E+   +PD I+   L++A  N G+ +   ++  M   
Sbjct: 269 IIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTKM 324

Query: 263 YNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
           ++ K  P V  Y+I I    + G  E A ++   M +KG+ PD      LI      G++
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           + A E L+   + G    I++Y++++   C N K  Q ALE++  +  +   P  S+ N 
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYNT 443

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           + +AL       + + ++ +M S G+ P+ ITY+ ++    R+  V+    LL   +   
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503

Query: 440 VIPNLVMFKCI-IGMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
             P++V +  + +G C + R E A  + E ++  N  RP  E  +T L
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVL 549



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 154/334 (46%), Gaps = 5/334 (1%)

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           Q  G + D ++      +C +SG       +   MV  G  P+V     LI G      +
Sbjct: 83  QSLGFR-DTQMLKIFHRSC-RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNI 140

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            KA     I+  K  +PD   +NALI    +   +D A  VL  M ++     PD +T  
Sbjct: 141 PKAVRVMEILE-KFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK--DFSPDTVTYN 197

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            ++ +  + G++D A +V   +   N + T   YTI I      G  + A  + D+M  +
Sbjct: 198 IMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSR 257

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD    + +I      G V+ AFE+++  + +G    +ISY+ L+ A  N   W++ 
Sbjct: 258 GLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEG 317

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            +L   M S K  P V T + LIT LC   ++ + M +L  MK  GL P+  +Y  L+ A
Sbjct: 318 EKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAA 377

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             R+  ++V +  L     DG +P++V +  ++ 
Sbjct: 378 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLA 411


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 203/439 (46%), Gaps = 12/439 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK----LVPNPTL 92
           + G+++E     ++M   GL+  + +Y     N       + EA   F+    L   P +
Sbjct: 466 KTGKMTEAAKYFDEMLDHGLMPNNPLYTV-LINGHFKAGNLMEALSIFRHLHALGVLPDV 524

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T +  +     +   + A +V   ++E GL  D   Y++LI+   K G+V+  FE+  E
Sbjct: 525 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDE 584

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   GI PN+  Y AL+DG  K+G + +A   +  M  K ++PD V ++ +I    +S  
Sbjct: 585 MCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN 644

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V  AF +  EM ++   V P      AL+  C   G +++A  +++ + +     T    
Sbjct: 645 VAEAFSLFHEMPSK--GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 702

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T+    C      E A  ++ +M  K ++PD V  + +ID+   AGK+E A  + +E + 
Sbjct: 703 TLIDGYCKSCKIQE-ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQE 761

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           + + V  ++Y+SLM   +      +   L+E M +  +KP   T   +I A C  D L +
Sbjct: 762 RNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVE 821

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             ++  ++   G+      + +L+ A  +++D+     LL +  E G+ P+L     ++ 
Sbjct: 822 AFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLV- 880

Query: 453 MCSRRYEKARTLNEHVLSF 471
              R + +A  ++E    F
Sbjct: 881 ---RSFHEAGKMDEATRVF 896



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 181/381 (47%), Gaps = 8/381 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L++ GR+ E + +  +++ KGL+     Y +     CK Q  +++AF     +      P
Sbjct: 534 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK-QGEVEKAFELHDEMCLKGIAP 592

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            +  +N L+     S D + A ++   + E GL+ D   Y+T+I    KS  V   F +F
Sbjct: 593 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 652

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           HEM + G++P+   Y AL+ GC K G + KA   +  M  K      + FN LI    +S
Sbjct: 653 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKS 711

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             +  A  +  EM A+   + PDH+T   ++     AG+++ A  ++K + + N+     
Sbjct: 712 CKIQEASQLFQEMIAK--QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTV 769

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            YT  +   ++ G      ++++ M  KGV PDEV    +I        +  AF++  E 
Sbjct: 770 TYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEV 829

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +G+      +  L+ A    ++  +A +L + M  + LKP+++  + L+ +  +  ++
Sbjct: 830 VGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKM 889

Query: 391 PKTMEVLSDMKSLGLCPNTIT 411
            +   V   +KSLGL P+T T
Sbjct: 890 DEATRVFEGVKSLGLVPDTTT 910



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 193/434 (44%), Gaps = 5/434 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
            +R+G I E + + + M   G+      Y+     +CK  K  K A     ++     P 
Sbjct: 254 FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPN 313

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             TF +L+       +   A ++L  +++  L      Y  +I        +    ++  
Sbjct: 314 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 373

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M  +G++PNV  Y  LI G A  G++ +A      M    V PD   +NA+I+   ++G
Sbjct: 374 KMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAG 433

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A   L E+      + PD +T GA +   +  G++  A + +  +  + +     +
Sbjct: 434 KMEEASTYLLEIQG--RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 491

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           YT+ IN   + G+   A S++  +   GV+PD    SA I      G+V+ A ++  E K
Sbjct: 492 YTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 551

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   + +YSSL+         +KA EL++ M    + P +   NAL+  LC    + 
Sbjct: 552 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQ 611

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  ++   M   GL P+++TYS ++    + ++V     L  +    GV P+  ++  ++
Sbjct: 612 RARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 671

Query: 452 GMCSRRYEKARTLN 465
             C +  +  + +N
Sbjct: 672 HGCCKEGDMEKAMN 685



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 189/384 (49%), Gaps = 7/384 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+  ++  +++     KD   A ++L  +  +GLK +  +Y+TLI   A  G+++    +
Sbjct: 347 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRL 406

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M  +G+ P++  Y A+I   +KAG++ +A      ++ + +KPD V F A I    +
Sbjct: 407 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSK 466

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +  A     EM    H + P++     L+     AG +  A  +++ +H   +   P
Sbjct: 467 TGKMTEAAKYFDEMLD--HGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV--LP 522

Query: 270 EVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +V T +  I+   + G  + A  V+ ++ +KG++PD    S+LI      G+VE AFE+ 
Sbjct: 523 DVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELH 582

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E   +GI+  I  Y++L+     + + Q+A +L++ M    L+P   T + +I   C  
Sbjct: 583 DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKS 642

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           + + +   +  +M S G+ P++  Y+ L+  C ++ D+E  + L  +  + G    L   
Sbjct: 643 ENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 702

Query: 448 KCIIGMC-SRRYEKARTLNEHVLS 470
             I G C S + ++A  L + +++
Sbjct: 703 TLIDGYCKSCKIQEASQLFQEMIA 726



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 184/429 (42%), Gaps = 41/429 (9%)

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           C S +++ E      LVPN    T+ ++ +    +K    A      +Q+ GLK D    
Sbjct: 194 CNSLRSMGEK----GLVPNTY--TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNAC 247

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           + LI    + G +D +  +   MV+ GI  N+ TY  LI G  K G++ KA      M +
Sbjct: 248 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMIT 307

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEM----------------NAEVHPVD--- 231
              KP+   F  LI    +   + RA ++L EM                N   H  D   
Sbjct: 308 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL 367

Query: 232 --------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
                         P+ +    L+   A+ G+++ AR +   +    +      Y   I+
Sbjct: 368 ANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIIS 427

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
           C S+ G  E A +   ++  +G+ PD V   A I      GK+  A +   E  + G+  
Sbjct: 428 CLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 487

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
               Y+ L+     A N  +AL ++ H+ ++ + P V T +A I  L    ++ + ++V 
Sbjct: 488 NNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVF 547

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-S 455
           S++K  GL P+  TYS L+    ++ +VE    L  +    G+ PN+ ++  ++ G+C S
Sbjct: 548 SELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKS 607

Query: 456 RRYEKARTL 464
              ++AR L
Sbjct: 608 GDIQRARKL 616



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 154/351 (43%), Gaps = 16/351 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  +  YN L+    + G I     L + M  KGL      Y       CKS+  + EA
Sbjct: 590 IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN-VAEA 648

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F  F  +P+    P    +N L+  C    D E A  + R + + G  A    + TLI  
Sbjct: 649 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDG 707

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             KS K+    ++F EM+   I P+  TY  +ID   KAG++ +A   +  M+ +N+  D
Sbjct: 708 YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 767

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRARE 255
            V + +L+    + G     F +  +M A+   V PD +T G ++ A C     V+  + 
Sbjct: 768 TVTYTSLMYGYNKLGQSSEVFALFEKMVAK--GVKPDEVTYGLVIYAHCKEDNLVEAFKL 825

Query: 256 VYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
             +++ K  + KGT  ++ + I    +  D   A  + D+M + G+ P     S L+   
Sbjct: 826 RDEVVGKGMLTKGT--IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSF 883

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             AGK++ A  + +  K+ G+     +   L+    N  + + A  L + +
Sbjct: 884 HEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 934



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 97/444 (21%), Positives = 172/444 (38%), Gaps = 69/444 (15%)

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M   G+ PN +TY  +  G  +A ++ +A   +  M+   +KPD    +ALI    +
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D    +   M +   P++   IT   L+      G++++A E+ K +     K   
Sbjct: 257 EGDIDEVLRIKDVMVSCGIPINL--ITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNS 314

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             + + I    +  +   A  + D+M K+ ++P  V                        
Sbjct: 315 RTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAV------------------------ 350

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                      SY +++    + K+   A +L E M    LKP V   + LI       +
Sbjct: 351 -----------SYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGR 399

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +   +L  M   G+ P+   Y+ ++    +   +E     L + +  G+ P+ V F  
Sbjct: 400 IEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGA 459

Query: 450 II---GMCSRRYEKARTLNE---HVLSFN--------SGRPQIENKWTSLALMVYREAIV 495
            I       +  E A+  +E   H L  N        +G  +  N     AL ++R    
Sbjct: 460 FILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLME--ALSIFRHLHA 517

Query: 496 AGTIPTVEVVSKVL-GCLQLPYNADIRERL-----VENLGVSADALKRSNLCSLIDGF-- 547
            G +P V+  S  + G L+   N  ++E L     ++  G+  D    S   SLI GF  
Sbjct: 518 LGVLPDVQTCSAFIHGLLK---NGRVQEALKVFSELKEKGLVPDVFTYS---SLISGFCK 571

Query: 548 -GEYDPRAFSLLEEAASFGIVPCV 570
            GE + +AF L +E    GI P +
Sbjct: 572 QGEVE-KAFELHDEMCLKGIAPNI 594



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 124/301 (41%), Gaps = 21/301 (6%)

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           +  LID   + G + +A   + + ++ ++    +  N+L  + G+ G V           
Sbjct: 159 FDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSL-RSMGEKGLV----------- 206

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
                  P+  T   +      A +++ A+  ++ + K  +K      +  I+   + GD
Sbjct: 207 -------PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 259

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            +    + D M   G+  + +  + LI      GK+E A EIL+     G      ++  
Sbjct: 260 IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 319

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L+       N  +ALEL + M+   L P+  +  A+I  LC    L    ++L  M   G
Sbjct: 320 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 379

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKAR 462
           L PN + YS L++    +  +E    LL      GV P++  +  II   S+  + E+A 
Sbjct: 380 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 439

Query: 463 T 463
           T
Sbjct: 440 T 440



 Score = 45.4 bits (106), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 77/204 (37%), Gaps = 54/204 (26%)

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII------------------SYSSLM 346
           V    LID     G ++ A  +   AKN  I + +I                  +Y+ + 
Sbjct: 157 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIIT 216

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVS------------------------------- 375
                AK   +A   +E M+   LKP  +                               
Sbjct: 217 AGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIP 276

Query: 376 ----TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
               T N LI  LC   ++ K  E+L  M +LG  PN+ T+ +L+    R+ ++   L L
Sbjct: 277 INLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALEL 336

Query: 432 LSQAKEDGVIPNLVMFKCII-GMC 454
           L + ++  ++P+ V +  +I G+C
Sbjct: 337 LDEMEKRNLVPSAVSYGAMINGLC 360


>gi|412993289|emb|CCO16822.1| predicted protein [Bathycoccus prasinos]
          Length = 1164

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 180/735 (24%), Positives = 295/735 (40%), Gaps = 166/735 (22%)

Query: 17  KHANYA-------HDVSEQLHSYNRLIRQGRISECIDLLE---DMERKGLLDMDKVYHAR 66
           K+ N+A       +D    +  Y+ L+R  R+ + IDLL+   D +   L D     H  
Sbjct: 224 KYPNFADCLGPKKYDSGHFIRLYSDLVRCDRLGDAIDLLQRLSDAKVPCLNDTRIRKHGT 283

Query: 67  --FFNVCK-----SQKAIKEAFRFFKLV--------PNPTLST-FNMLMSVCASSKDSEG 110
             F   C+     S   +  AF F  LV         N  ++T +N L++VC++  D E 
Sbjct: 284 VDFLVSCERSNKLSNSPVTHAFTFTNLVLGAAREELSNAEVATIYNKLLAVCSAHGDCEA 343

Query: 111 AFQVLRLVQE--AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGA 167
           A +    +++   GL  D   +T+LI    K+GKVD  F+ F+ M     IEP + TYGA
Sbjct: 344 AAKAFEQMKQDPKGLTIDVITHTSLIVAYGKAGKVDLAFDQFNTMTKKDKIEPTIVTYGA 403

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKP--------DRV-----------------VFNA 202
           L+D  ++  +V +  G  G  +S N K         DRV                 V N 
Sbjct: 404 LMDALSR--EVGRRSGNGGF-KSNNKKDISYVKDALDRVFNLRSDLQASGLHMDVRVLNC 460

Query: 203 LITACGQSG--------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           L++ACG++         A+DRAFD++AE  +  + + PD IT  +LM  C NAG+  RA 
Sbjct: 461 LVSACGRAAAFEELRTDALDRAFDIVAE--SRRNGLFPDAITYSSLMSGCVNAGEPQRAL 518

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD---------DMTKKGVIPDEV 305
            +Y  +    +  T  VY  AI+ C+   D++ +   Y             K  V+ D V
Sbjct: 519 ALYDEMETKGVARTASVYATAIHACATEYDYDNSAPNYRKAFKIWEEVQQNKPRVVVDPV 578

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIIS---------------------- 341
             + ++  A  AG VE    +++E +  G  +S  ++S                      
Sbjct: 579 LYATILTVASRAGNVEMCANLIREMEMNGSMMSPAVVSNMCGSFARAGDAGAVDRILSDA 638

Query: 342 -----------YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQ 389
                      Y++L+ + +   + + A + Y+ +      P   T   LI A     + 
Sbjct: 639 EKSNEIVPRACYNALINSFARDADLEGATKAYDRLIESGQSPDEITFEGLILAAAKKTET 698

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L +  ++L +   LGL P   TY+ L+    R  D+      +   K  G  P+ + ++ 
Sbjct: 699 LAEAKKLLQEALDLGLRPTLPTYNALVRGFGRAGDLNKTYATVKAMKYAGYTPDEMTWRE 758

Query: 450 IIGMCSRR---------YEKAR---------TLNE------------------------H 467
           ++  C+R          Y+ +R         TLN                         H
Sbjct: 759 LLFSCARHGNCLLAWDAYKSSRAAGIAPCEVTLNTILGAILAHIRTLTDPTRLASDKPGH 818

Query: 468 VLSFNSGRPQIENK-----WTSLA---LMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 519
            L+  +   +I +      W   A     V+ EA   G  P VE  S +L CL+ P + +
Sbjct: 819 GLTDTTTSGEIASSVAQPAWKEWADRATAVFHEATTHGVKPRVETFSSMLACLRPPTDQE 878

Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDP-RAFSLLEEAASFGIVPCVSFKEIPVV 578
           +  +L    G  + A   ++  ++ +    Y P +A  L EEA + GIVP     E    
Sbjct: 879 V--QLASKYGGESLARLVTHQSNVHEDAATYYPTKALILFEEAQAIGIVPQFEMSE-DSE 935

Query: 579 VDARKLEIHTAKVSL 593
            D R      A+V+L
Sbjct: 936 YDMRNFPPAAAEVAL 950


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 183/380 (48%), Gaps = 6/380 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P L++++ L++   +++D   A  + RL+   +E+ L+ D  L++ LI+  A++   DA 
Sbjct: 195 PDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDLISAFARAALPDAA 254

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALIT 205
            ++       G+ P  +   ALI     AG+VA+A   +     +  +KP    +NAL+ 
Sbjct: 255 LDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLK 314

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G++  A  VL EM+     V PD  T   L+ A   AG+ + AR + K +    +
Sbjct: 315 GYVKIGSLKNAEQVLDEMSD--CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGV 372

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K +  V++  +      GDW+ A +V  +M   GV PD  F + +ID  G    +  A +
Sbjct: 373 KPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMD 432

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
                + +GI   ++++++L+ A        +A+EL+E M+     P  +T N +I  L 
Sbjct: 433 AFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLG 492

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           + ++      +LS+MK  GL PN ITY+ L+    R    +  +  +   K DG+ P+  
Sbjct: 493 EQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPT 552

Query: 446 MFKCIIGMCSRRYEKARTLN 465
           M+  ++   ++R      LN
Sbjct: 553 MYHALVNAYAQRGLADHALN 572



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 160/342 (46%), Gaps = 5/342 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P    +N L+         + A QVL  + + G+  D   Y+ L+    ++G+ ++   
Sbjct: 303 KPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARI 362

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G++P+ + +  ++ G    G   KAF     M +  V+PDR  +N +I   G
Sbjct: 363 LLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFG 422

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +  A D    M  E   ++PD +T   L+ A    G+ DRA E+++ + + N    
Sbjct: 423 KYNCLGHAMDAFNRMREE--GIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPG 480

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I IN   +   W    ++  +M ++G++P+ +  + L+D  G +G+ + A E ++
Sbjct: 481 TTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIE 540

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             K  G+      Y +L+ A +       AL + + M++  L+ +   +N+L+ A  +  
Sbjct: 541 VMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLMNAFGEDR 600

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEV 427
           ++ +   VL  MK   L P+ ITY+ L   L+  E+ D V V
Sbjct: 601 RVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQFDKVPV 642



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 135/296 (45%), Gaps = 2/296 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P+   F+ +++      D + AF VLR +  +G++ D   Y  +I T  K   +    +
Sbjct: 373 KPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMD 432

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F+ M   GIEP+V T+  LID   K G+  +A   +  MR  N  P    +N +I   G
Sbjct: 433 AFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLG 492

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +         +L+EM  +   + P+ IT   L+     +G+   A E  +++    +K +
Sbjct: 493 EQERWVGVETMLSEMKEQ--GLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPS 550

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P +Y   +N  +Q G  + A +V   M   G+    V L++L++  G   +V  AF +LQ
Sbjct: 551 PTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQ 610

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
             K   +   +I+Y++LM A    + + K   +YE M +    P       L +AL
Sbjct: 611 FMKENDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGCAPDRKARAMLRSAL 666



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 173/428 (40%), Gaps = 23/428 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    F+ L+S  A +   + A  +L   Q  GL       T LI+    +G+V     +
Sbjct: 233 PDAPLFSDLISAFARAALPDAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEAL 292

Query: 150 FHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           F E   AG I+P    Y AL+ G  K G +  A      M    V PD   ++ L+ A  
Sbjct: 293 FLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYT 352

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G  + A  +L EM A+   V P       ++    + G   +A  V + +H   ++  
Sbjct: 353 RAGRWESARILLKEMEAD--GVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPD 410

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y + I+   +      A   ++ M ++G+ PD V  + LID     G+ + A E+ +
Sbjct: 411 RHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFE 470

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E +      G  +Y+ ++      + W     +   MK   L P + T   L+       
Sbjct: 471 EMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSG 530

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  + +E +  MK+ GL P+   Y  L+ A  ++   +  L ++   + DG+  + V+  
Sbjct: 531 RFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN 590

Query: 449 CIIGMCS--RRYEKARTLNEHVLSF---NSGRPQIENKWTSLALM-----------VYRE 492
            ++      RR  +A +    VL F   N  RP +    T +  +           +Y E
Sbjct: 591 SLMNAFGEDRRVVEAFS----VLQFMKENDLRPDVITYTTLMKALIRIEQFDKVPVIYEE 646

Query: 493 AIVAGTIP 500
            I +G  P
Sbjct: 647 MITSGCAP 654



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS--- 93
           R GR  E I+ +E M+  GL     +YHA   N    +     A    K +    L    
Sbjct: 528 RSGRFKEAIECIEVMKADGLKPSPTMYHA-LVNAYAQRGLADHALNVVKAMRADGLEAST 586

Query: 94  -TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
              N LM+     +    AF VL+ ++E  L+ D   YTTL+    +  + D +  ++ E
Sbjct: 587 VVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQFDKVPVIYEE 646

Query: 153 MVNAGIEPN 161
           M+ +G  P+
Sbjct: 647 MITSGCAPD 655


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 169/345 (48%), Gaps = 2/345 (0%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           +++ A ++LR      ++ D  +Y T+I    K   V+  F+++ E V+  I P+V TY 
Sbjct: 313 ETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYN 372

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           ALI G    G++  A   +  M SKN+ PD   F+ L+    + G +  A +VLA M  +
Sbjct: 373 ALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQ 432

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              + PD +T  +LM       +V++A  ++  +    +    + Y I IN   +    +
Sbjct: 433 --SIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVD 490

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  ++ +M  K + PD +  S+LID    +G++  A E++ E   +G    II+Y+S++
Sbjct: 491 EAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSIL 550

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A     +  KA+ L   +K   ++P ++T   L+  LC   +L    +V  D+   G  
Sbjct: 551 DALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYN 610

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +   Y++++     K   +  L LLS+ +E+G IP+   ++ II
Sbjct: 611 LDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIII 655



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 203/434 (46%), Gaps = 24/434 (5%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
           R+   + +L D +R  L D      +R FNV  S K + E  + F +     L +F + +
Sbjct: 192 RLCWIVLILWDFKRLFLKDF---LQSRLFNVLHSFKILIEYHKTF-IKQKCLLKSFEISI 247

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
                             + + G + D    TT I      G++        +++  G  
Sbjct: 248 EYTPPK------------ILKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFH 295

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
            +  +YG LI+G  K G+   A         K V+PD V++N +I    +   V+ AFD+
Sbjct: 296 LDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDL 355

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAIN 277
            +E  ++   + PD  T  AL+      G++  A +++  +   NI   P+VYT  I ++
Sbjct: 356 YSEKVSK--RIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNI--IPDVYTFSILVD 411

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
              + G+ + A +V   M K+ + PD V  S+L+D      +V  A  I     ++G++ 
Sbjct: 412 GFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTA 471

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
            + SY+ ++      K   +A++L++ M   ++ P V T ++LI  LC   ++   +E++
Sbjct: 472 NVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELV 531

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-S 455
            +M   G  P+ ITY+ +L A  +K  V+  + LL++ K  G+ P++  +  ++ G+C S
Sbjct: 532 DEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQS 591

Query: 456 RRYEKARTLNEHVL 469
            + E AR + E +L
Sbjct: 592 GKLEDARKVFEDLL 605



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 172/380 (45%), Gaps = 31/380 (8%)

Query: 17  KHAN-----YAHDVSEQLH----SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVY 63
           KH N     Y+  VS+++     +YN LI      G++ + IDL   M  K ++     +
Sbjct: 347 KHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTF 406

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
                  CK    IKEA     ++      P + T++ LM       +   A  +   + 
Sbjct: 407 SILVDGFCKDGN-IKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMS 465

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
             G+ A+ + Y  +I    K   VD   ++F EM +  I P+V TY +LIDG  K+G+++
Sbjct: 466 HRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRIS 525

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            A      M  +  +PD + +N+++ A  +   VD+A  +L ++  +   + PD  T   
Sbjct: 526 YALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQ--GIRPDMNTYTI 583

Query: 240 LMKACANAGQVDRAREVYK--MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
           L+K    +G+++ AR+V++  ++  YN+      YT+ I      G ++ A ++   M +
Sbjct: 584 LVKGLCQSGKLEDARKVFEDLLVKGYNLD--VYAYTVMIQGFCDKGLFDEALALLSKMEE 641

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G IPD      +I       + + A ++L+E   +G+ V +     L+ +    + W  
Sbjct: 642 NGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLLVALT--DDLVASILVRRTWCA 699

Query: 358 ALELYEH-----MKSIKLKP 372
            L L+       ++ I+LKP
Sbjct: 700 RLALWVTFISLLLRVIELKP 719


>gi|298706415|emb|CBJ29411.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 176/351 (50%), Gaps = 11/351 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFE 148
           P++ ++++ ++ CA     + A  +LR ++E   +K D   Y+  IT CA  G+      
Sbjct: 8   PSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVA 67

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M N G+ PNV +  A I    +AGQ   A      M    + PD + +N  I+A G
Sbjct: 68  ILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALG 127

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
            +G  ++A ++++EM+     ++P  +T  + + A A  G   + R+   ++   ++ G 
Sbjct: 128 VAGQSEQAQELMSEMSR--LGIEPTVVTYNSAIAAIARGGG-GQWRQAVALVKHMSLAGV 184

Query: 268 TPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           TP+   Y   I  C + G W+ A SV   M K+G+  D +  SA I   G AG+ E +  
Sbjct: 185 TPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVG 244

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L EAK+ GI+  +++Y++ + AC++A    KA  L + M S  ++P  +   +LI AL 
Sbjct: 245 LLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALG 304

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEVGLMLL 432
              Q  + +E+L  M  +G   N + Y+ L+ +       K + E G +LL
Sbjct: 305 HDGQWTQAVEILESMPKMGAPRNAMVYNALITSWANAEVAKGEEEGGALLL 355



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 158/333 (47%), Gaps = 5/333 (1%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV-NAGIEPNVHTYGALIDGCAKAGQVAK 180
           G++   + Y+  +T CAK G+      +  EM  +  I+ +V  Y A I  CA  G+  +
Sbjct: 5   GIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQE 64

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A      M +  V+P+ +  NA I A G++G    A  +L  M+     + PD I+    
Sbjct: 65  AVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSK--AGLSPDAISYNTA 122

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKK 298
           + A   AGQ ++A+E+   + +  I+ T   Y  AI   ++ G   W  A ++   M+  
Sbjct: 123 ISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLA 182

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV PD +  ++LI   G  G+ + A  +L+  K QG+S  II YS+ + AC  A  W+ +
Sbjct: 183 GVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYS 242

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           + L    KS+ + P +    A +TA  D +Q  K   +L +M S G+ P+   ++ L+ A
Sbjct: 243 VGLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAA 302

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                     + +L    + G   N +++  +I
Sbjct: 303 LGHDGQWTQAVEILESMPKMGAPRNAMVYNALI 335



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 147/325 (45%), Gaps = 12/325 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + GR  E + LL +ME    + +D V ++     C +    +EA      +PN    P +
Sbjct: 22  KGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDMPNVGVRPNV 81

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            + N  +     +   + A  +LR + +AGL  D   Y T I+    +G+ +   E+  E
Sbjct: 82  ISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTAISALGVAGQSEQAQELMSE 141

Query: 153 MVNAGIEPNVHTYGALIDGCAK--AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           M   GIEP V TY + I   A+   GQ  +A      M    V PD + +N+LI ACG+ 
Sbjct: 142 MSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVTPDSITYNSLIVACGKG 201

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G   +A  VL  M  +   +  D I   A + AC  AGQ + +  +        I  TP+
Sbjct: 202 GQWKQALSVLKGMKKQ--GLSCDIIGYSAAISACGEAGQWEYSVGLLAEAKSLGI--TPD 257

Query: 271 V--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           +  YT A+  C+     + A  +  +M   G+ PD    ++LI   GH G+   A EIL+
Sbjct: 258 LVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGHDGQWTQAVEILE 317

Query: 329 EAKNQGISVGIISYSSLMGACSNAK 353
                G     + Y++L+ + +NA+
Sbjct: 318 SMPKMGAPRNAMVYNALITSWANAE 342



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 138/289 (47%), Gaps = 9/289 (3%)

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M    ++P    ++  +TAC + G    A  +L EM  E   +  D +   A + ACAN 
Sbjct: 1   MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREME-EDDEIKLDVVAYSAAITACANG 59

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           G+   A  +   +    ++  P V +   AI    + G W+ A S+   M+K G+ PD +
Sbjct: 60  GRWQEAVAILSDMPNVGVR--PNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAI 117

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS--NAKNWQKALELYE 363
             +  I   G AG+ E A E++ E    GI   +++Y+S + A +      W++A+ L +
Sbjct: 118 SYNTAISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVK 177

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
           HM    + P   T N+LI A   G Q  + + VL  MK  GL  + I YS  + AC    
Sbjct: 178 HMSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAG 237

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLS 470
             E  + LL++AK  G+ P+LV +   +  C  + + +KA  L + +LS
Sbjct: 238 QWEYSVGLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLS 286


>gi|298710575|emb|CBJ32006.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 706

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 116/470 (24%), Positives = 200/470 (42%), Gaps = 55/470 (11%)

Query: 15  NGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNV 70
           NG+    +  + EQ  +YN ++    R G+  E + LL++ME +G+   D V +A     
Sbjct: 45  NGEEYLSSWLIVEQ-KAYNTILAALSRAGKWEEAVLLLKEMETRGI-QRDAVSYA----- 97

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           C                          L++ C      E A   L  +++ G+KA+  +Y
Sbjct: 98  C--------------------------LIAACGRGMQWERALISLAEMRDVGIKANSFVY 131

Query: 131 TTLITTCAKSGKVDAMFEVFHEM-VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  I  CAK  +      +  +M V  G+  N+  Y A  D C KAG+  +A      M+
Sbjct: 132 SAAIDACAKGRQWQKALILLRDMEVVDGLPANLICYNAAADACGKAGRPGEALALLAKMQ 191

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
              VKP+ V + ++I+AC + G   RA  +L EM   V  V PD     + + AC   G+
Sbjct: 192 KVGVKPNEVSYLSVISACSRVGDWKRALLLLDEMI--VMGVQPDLKCYCSAITACGKGGR 249

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
             +A  +  ++HK         Y  AI+ C ++G W  A  +   M  +GV PD +  ++
Sbjct: 250 WKQALGLLNIMHKDGPPPNDYCYNAAISACGKSGQWREAKELLSTMRDRGVPPDLISYNS 309

Query: 310 LIDFAGHAGKVEAAFEIL-------------QEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            ID  G  G+ E   +I                   +  +    +Y + + ACS  K WQ
Sbjct: 310 AIDACGKGGRWEEGLKIFVGMVKASEVPWDADMGHPKPPTPDATTYGAAITACSRGKQWQ 369

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            AL   E M+   ++ T     A +       +  + +  L  M+  GL P    Y+ ++
Sbjct: 370 MALRFLEDMEKKGVERTEGVFQATLAGCARMGRWRECIVTLDQMRKSGLQPRAAAYNSVI 429

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTL 464
            AC R  + +  + +L Q    G  P+++    ++  C  S+R+++AR +
Sbjct: 430 TACGRGGEWQRAIAILKQMSSRGATPDVITLNAVMTSCAQSQRWKQARVI 479



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 150/335 (44%), Gaps = 15/335 (4%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVC 102
           LL DME    L  + + +    + C       EA        K+   P   ++  ++S C
Sbjct: 150 LLRDMEVVDGLPANLICYNAAADACGKAGRPGEALALLAKMQKVGVKPNEVSYLSVISAC 209

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
           +   D + A  +L  +   G++ D K Y + IT C K G+      + + M   G  PN 
Sbjct: 210 SRVGDWKRALLLLDEMIVMGVQPDLKCYCSAITACGKGGRWKQALGLLNIMHKDGPPPND 269

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
           + Y A I  C K+GQ  +A      MR + V PD + +N+ I ACG+ G  +    +   
Sbjct: 270 YCYNAAISACGKSGQWREAKELLSTMRDRGVPPDLISYNSAIDACGKGGRWEEGLKIFVG 329

Query: 223 M--NAEV---------HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           M   +EV          P  PD  T GA + AC+   Q   A    + + K  ++ T  V
Sbjct: 330 MVKASEVPWDADMGHPKPPTPDATTYGAAITACSRGKQWQMALRFLEDMEKKGVERTEGV 389

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   +  C++ G W       D M K G+ P     +++I   G  G+ + A  IL++  
Sbjct: 390 FQATLAGCARMGRWRECIVTLDQMRKSGLQPRAAAYNSVITACGRGGEWQRAIAILKQMS 449

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           ++G +  +I+ +++M +C+ ++ W++A  + + M+
Sbjct: 450 SRGATPDVITLNAVMTSCAQSQRWKQARVILDFMR 484



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 1/147 (0%)

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ++ A +A KV AA    +E  +  + V   +Y++++ A S A  W++A+ L + M++  +
Sbjct: 30  VEQALNARKVSAAQANGEEYLSSWLIVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGI 89

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           +    +   LI A   G Q  + +  L++M+ +G+  N+  YS  + AC +    +  L+
Sbjct: 90  QRDAVSYACLIAACGRGMQWERALISLAEMRDVGIKANSFVYSAAIDACAKGRQWQKALI 149

Query: 431 LLSQAK-EDGVIPNLVMFKCIIGMCSR 456
           LL   +  DG+  NL+ +      C +
Sbjct: 150 LLRDMEVVDGLPANLICYNAAADACGK 176


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 195/435 (44%), Gaps = 6/435 (1%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G + +      +M  +G+L     Y++    +CK+Q   K     
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVL 257

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ +   G++ D   Y +L+    K+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+     ++F  M   G++P + TYG L+ G A  G + +  G   +M    + P+  VF
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + LI A  + G VD+A  V ++M  +   ++PD +T G ++     +G+V+ A   ++ +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQ--GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +     VY   I+       W+ A  +  +M  +G+  D +F +++ID     G+V
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             + ++       G+   II+YS+L+     A    +A +L   M S+ +KP   T N L
Sbjct: 496 IESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I   C   ++   + +  +M+S G+ P+ ITY+I+L    +         L     E G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 441 IPNLVMFKCII-GMC 454
              L  +  I+ G+C
Sbjct: 616 QLELSTYNIILHGLC 630



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 208/469 (44%), Gaps = 47/469 (10%)

Query: 40  RISECIDL-LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN------PTL 92
           R S+ +D+ L  M + G +     Y+     +C   ++ +EA    +++P+      P +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRS-QEALELLQMMPDDGGDCPPDV 199

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            ++  +++      D + A+     + + G+  +   Y ++I    K+  +D   EV   
Sbjct: 200 VSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTS 259

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV  G+ PN  TY +++ G   +GQ  +A G    M S  V+PD V +N+L+    ++G 
Sbjct: 260 MVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR 319

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              A  +   M      + P+  T G L++  A  G +     +  ++ +  I     V+
Sbjct: 320 CTEARKMFDSMTK--RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +I I   ++ G  + A  V+  M ++G+ PD V    +I     +G+VE A    ++  +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALEL------------------------------- 361
           + +S G I Y+SL+ +      W KA EL                               
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497

Query: 362 ----YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
               ++ M  I +KP + T + LI   C   ++ +  ++L+ M S+G+ P+ +TY+ L+ 
Sbjct: 498 SEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLIN 557

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
              +   +E  L+L  + +  GV P+++ +  I+ G+  +RR   A+ L
Sbjct: 558 GYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 213/500 (42%), Gaps = 60/500 (12%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-----------LKA 125
           IK+ FR   +   P      +L  +CA  + S+    VLR + + G           LK 
Sbjct: 118 IKKGFRVDAIAFTP------LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 126 DCK--------------------------LYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
            C                            YTT+I    K G +D  +  +HEM++ GI 
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PNV TY ++I    KA  + KA      M    V P+   +N+++     SG    A   
Sbjct: 232 PNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L +M+++   V+PD +T  +LM      G+   AR+++  + K  +K     Y   +   
Sbjct: 292 LKKMHSD--GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
           +  G       + D M + G+ P+    S LI      GKV+ A  +  + + QG++   
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++Y +++G    +   + A+  +E M   +L P     N+LI +LC  D+  K  E++ +
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILE 469

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRR 457
           M   G+C +TI ++ ++ +  ++  V     L       GV PN++ +  +I G C + +
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGK 529

Query: 458 YEKARTLNEHVLSFNSGRPQ------IENKWTSL-----ALMVYREAIVAGTIPTVEVVS 506
            ++A  L   ++S    +P       + N +  +     AL+++RE   +G  P +   +
Sbjct: 530 MDEATKLLASMVSVGM-KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 507 KVL-GCLQLPYNADIRERLV 525
            +L G  Q    A  +E  V
Sbjct: 589 IILQGLFQTRRTAAAKELYV 608



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 192/426 (45%), Gaps = 11/426 (2%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
            +YN ++      G+  E I  L+ M   G+      Y++    +CK+ +   EA + F 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC-TEARKMFD 328

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K    P ++T+  L+   A+         +L L+   G+  +  +++ LI   AK G
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KVD    VF +M   G+ P+  TYG +I    K+G+V  A   +  M  + + P  +V+N
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYN 448

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +LI +       D+A +++ EM      +  D I   +++ +    G+V  + +++ ++ 
Sbjct: 449 SLIHSLCIFDKWDKAKELILEMLD--RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +K     Y+  I+     G  + A  +   M   G+ PD V  + LI+      ++E
Sbjct: 507 RIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  + +E ++ G+S  II+Y+ ++      +    A ELY  +     +  +ST N ++
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL 626

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC  +   + + +  ++    L   T T++I++ A  +    +    L +    +G++
Sbjct: 627 HGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLV 686

Query: 442 PNLVMF 447
           P++  +
Sbjct: 687 PDVRTY 692



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 155/340 (45%), Gaps = 12/340 (3%)

Query: 150 FHEMVNAG---IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           ++ M  AG   + PN+ TYG LI  C  AG++   F A G +  K  + D + F  L+  
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                    A D++     ++  + P+  +   L+K   +  +   A E+ +M+      
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCI-PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD 194

Query: 267 GTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P+V  YT  IN   + GD + A   Y +M  +G++P+ V  +++I     A  ++ A 
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAM 254

Query: 325 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           E+L      G+     +Y+S++ G CS+ +  ++A+   + M S  ++P V T N+L+  
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP-KEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   +  +  ++   M   GL P   TY  LL     K  +     LL     +G+ PN
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 483
             +F  +I  C+  Y K   +++ +L F+  R Q  N  T
Sbjct: 374 HYVFSILI--CA--YAKQGKVDQAMLVFSKMRQQGLNPDT 409



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 163/385 (42%), Gaps = 42/385 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM--RSKNVKPDRVVFNALITA 206
           V   M   G  PNV +Y  L+ G     +  +A     +M     +  PD V +  +I  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G +D+A+    EM      + P+ +T  +++ A   A  +D+A EV          
Sbjct: 209 FFKEGDLDKAYGTYHEMLD--RGILPNVVTYNSIIAALCKAQAMDKAMEVLT-------- 258

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                                       M K GV+P+    ++++     +G+ + A   
Sbjct: 259 ---------------------------SMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L++  + G+   +++Y+SLM          +A ++++ M    LKP ++T   L+     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L +   +L  M   G+ PN   +SIL+ A  ++  V+  +++ S+ ++ G+ P+ V 
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 447 FKCIIG-MC-SRRYEKARTLNEHVL 469
           +  +IG +C S R E A    E ++
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMI 436



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 34/193 (17%), Positives = 84/193 (43%), Gaps = 7/193 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +  R+ + + L  +ME  G+      Y+     + ++++       +  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 87  VPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             + T   LST+N+++     +  ++ A ++ + +    L+ + + +  +I    K G+ 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   ++F  +   G+ P+V TY  + +   + G + +    +  M       +  + N++
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 730

Query: 204 ITACGQSGAVDRA 216
           +    Q G + RA
Sbjct: 731 VRKLLQRGDITRA 743


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 121/468 (25%), Positives = 221/468 (47%), Gaps = 16/468 (3%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++ L  ++R  R G   E + LLE M RKG  + D +   +      + + I +A R  +
Sbjct: 90  TQMLKIFHRSCRSGNYIESLHLLETMVRKG-YNPDVILCTKLIKGFFTLRNIPKAVRVME 148

Query: 86  LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P +  +N L++        + A +VL  ++      D   Y  +I +    GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D   +V +++++   +P V TY  LI+     G V +A      M S+ +KPD   +N 
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I    + G VDRAF+++   N E+   +PD I+   L++A  N G+ +   ++  M   
Sbjct: 269 IIRGMCKEGMVDRAFEMVR--NLELKGSEPDVISYNILLRALLNQGKWEEGEKL--MTKM 324

Query: 263 YNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
           ++ K  P V  Y+I I    + G  E A ++   M +KG+ PD      LI      G++
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           + A E L+   + G    I++Y++++   C N K  Q ALE++  +  +   P  S+ N 
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYNT 443

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           + +AL       + + ++ +M S G+ P+ ITY+ ++    R+  V+    LL   +   
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503

Query: 440 VIPNLVMFKCI-IGMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
             P++V +  + +G C + R E A  + E ++  N  RP  E  +T L
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN-ETTYTVL 549



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 154/334 (46%), Gaps = 5/334 (1%)

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           Q  G + D ++      +C +SG       +   MV  G  P+V     LI G      +
Sbjct: 83  QSLGFR-DTQMLKIFHRSC-RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNI 140

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            KA     I+  K  +PD   +NALI    +   +D A  VL  M ++     PD +T  
Sbjct: 141 PKAVRVMEILE-KFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK--DFSPDTVTYN 197

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            ++ +  + G++D A +V   +   N + T   YTI I      G  + A  + D+M  +
Sbjct: 198 IMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSR 257

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD    + +I      G V+ AFE+++  + +G    +ISY+ L+ A  N   W++ 
Sbjct: 258 GLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEG 317

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            +L   M S K  P V T + LIT LC   ++ + M +L  MK  GL P+  +Y  L+ A
Sbjct: 318 EKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAA 377

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             R+  ++V +  L     DG +P++V +  ++ 
Sbjct: 378 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLA 411


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 171/341 (50%), Gaps = 2/341 (0%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A ++LR ++    + D  +Y T+I    K   V   F+++ EM    + PNV TY +LI 
Sbjct: 173 ALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIY 232

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G    GQ+ KAFG    M  KNV P+   FN L+    + G +  A  ++A M  E   V
Sbjct: 233 GFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKE--GV 290

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD  T  ALM       +  +A+ V+ ++ +  +      Y++ I+  S+    + A  
Sbjct: 291 GPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMD 350

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +++ M  + VIPD V  S+LID    +G++ +A + + E  ++G    +I+Y+SL+ A  
Sbjct: 351 LFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALC 410

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            +    KA+ L + +K   ++  + T N L+  LC   +L    +V  D+   G   + +
Sbjct: 411 KSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVV 470

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           TYSI++    ++   +  L LLS+ ++ G +P+ + ++ II
Sbjct: 471 TYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETII 511



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 174/365 (47%), Gaps = 9/365 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T N+L++     +    AF V   + + G + D   YTTLI     +G+V         +
Sbjct: 86  TLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRL 145

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           V+ GI+ +  +YG LI+G  K GQ   A      +  +  +PD V++N +I    +   V
Sbjct: 146 VSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLV 205

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             AFD+  EM  +   V P+ +T  +L+      GQ+D+A  +   +   N+      + 
Sbjct: 206 RDAFDLYCEMFEK--RVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFN 263

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID---FAGHAGKVEAAFEILQEA 330
             ++   + G    A S+   M K+GV PD    +AL+D       AGK +  F I+ + 
Sbjct: 264 TLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQ- 322

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
              G++  + SYS ++   S  K   +A++L+E M++  + P V   ++LI  LC   ++
Sbjct: 323 --MGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRI 380

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              ++ + +M   G  PN ITY+ L+ A  +   V+  + LL + K+ G+  N+  +  +
Sbjct: 381 NSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNIL 440

Query: 451 I-GMC 454
           + G+C
Sbjct: 441 VDGLC 445



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 186/406 (45%), Gaps = 21/406 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK 85
           +Y  LIR     G++ E ++  + +  +G+  +D V +    N +CK  +    A R  +
Sbjct: 121 TYTTLIRGLCLNGQVKESLNFHDRLVSQGI-KLDHVSYGTLINGLCKIGQT-GPALRLLR 178

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P +  +N ++      K    AF +   + E  +  +   YT+LI      G
Sbjct: 179 KIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVG 238

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++D  F + +EMV   + PNV T+  L+DG  K G++ +A     +M  + V PD   +N
Sbjct: 239 QLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYN 298

Query: 202 ALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           AL+       ++G     F+++A+M      V  D  +   ++   +    +D A ++++
Sbjct: 299 ALMDGYFLVKEAGKAKNVFNIMAQMG-----VTCDVHSYSVMISGLSKMKMLDEAMDLFE 353

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +   N+      Y+  I+   ++G    A    D+M  +G  P+ +  ++LID    + 
Sbjct: 354 GMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSH 413

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           +V+ A  +L++ K+QGI   + +Y+ L+ G C + +    A ++++ +        V T 
Sbjct: 414 QVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGR-LTDAQKVFQDLLMKGHNVDVVTY 472

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
           + +I  LC      + + +LS M+  G  P+ I Y  ++ A   KD
Sbjct: 473 SIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKD 518



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/403 (20%), Positives = 174/403 (43%), Gaps = 4/403 (0%)

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           H  F ++     AI    R  ++ P P +  F  ++     +K       + + ++  G+
Sbjct: 21  HTHFHSLPNLNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGI 80

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
           +++      LI +     ++++ F VF +++  G +P++ TY  LI G    GQV ++  
Sbjct: 81  QSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLN 140

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            +  + S+ +K D V +  LI    + G    A  +L ++  E+    PD +    ++  
Sbjct: 141 FHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEI--CRPDVVMYNTIIDG 198

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
                 V  A ++Y  + +  +      YT  I      G  + A  + ++M  K V P+
Sbjct: 199 LCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPN 258

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
               + L+D     GK+  A  ++     +G+   + +Y++LM      K   KA  ++ 
Sbjct: 259 VCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFN 318

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M  + +   V + + +I+ L     L + M++   M++  + P+ + YS L+    +  
Sbjct: 319 IMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSG 378

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
            +   L  + +  + G  PN++ +  +I  +C S + +KA  L
Sbjct: 379 RINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIAL 421



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 116/242 (47%), Gaps = 6/242 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N LM      K++  A  V  ++ + G+  D   Y+ +I+  +K   +D   ++
Sbjct: 292 PDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDL 351

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M N  + P+V  Y +LIDG  K+G++  A      M  +   P+ + + +LI A  +
Sbjct: 352 FEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCK 411

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK--MIHKYNIKG 267
           S  VD+A  +L ++  +   +  +  T   L+      G++  A++V++  ++  +N+  
Sbjct: 412 SHQVDKAIALLKKIKDQ--GIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDV 469

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y+I IN   +   ++ A ++   M  KG +PD +    +I+        + A ++L
Sbjct: 470 V--TYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLL 527

Query: 328 QE 329
           +E
Sbjct: 528 RE 529



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 9/207 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  +HSY+ +I    +   + E +DL E M  + ++     Y +    +CKS + I  A
Sbjct: 325 VTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGR-INSA 383

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            ++   + +    P + T+  L+     S   + A  +L+ +++ G++A+   Y  L+  
Sbjct: 384 LKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDG 443

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G++    +VF +++  G   +V TY  +I+G  K     +A      M  K   PD
Sbjct: 444 LCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPD 503

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEM 223
            + +  +I A  +    D+A  +L EM
Sbjct: 504 AIAYETIINAFFEKDMNDKAEKLLREM 530


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 197/424 (46%), Gaps = 13/424 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++GR+ +  DLL DM+ +GLL     Y+   +  CK    +KEA    +L+      P
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCK-MGWLKEAANVIELMTQNNLLP 311

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T+NML++   +    E AF++   ++   L  D   Y TLI  C +  K+   F++ 
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLL 371

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM   G++PN  T+  ++    K G++  A      M      PD V +N LI    ++
Sbjct: 372 EEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKA 431

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--T 268
           G +  AF  + EM  +   +D   +T+  +++      +++   E YK++     +G   
Sbjct: 432 GNMGEAFRTMDEMGRKNMKMDS--VTLNTILRTLCREKKLE---EAYKLLSSARKRGYFI 486

Query: 269 PEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
            EV Y   I    + G+ + A  ++D+M +K +IP  V  + +I      GK E A   L
Sbjct: 487 DEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKL 546

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E    G+     +Y++++       + +KA + +  M     KP V T N L+  LC  
Sbjct: 547 NELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCME 606

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             L K +++ +   S G   +T+TY+ L+ +  ++  ++    LLS+ +E  + P+   +
Sbjct: 607 GMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTY 666

Query: 448 KCII 451
             II
Sbjct: 667 NAII 670



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 190/433 (43%), Gaps = 12/433 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           L+S  R      +S   +   D  + G++     ++   +  C   K  K+A  F  ++ 
Sbjct: 177 LNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENK-FKDAVEFLNVMG 235

Query: 89  ----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               +P   T+N ++           A  +L  ++  GL  +   Y  L+    K G + 
Sbjct: 236 KYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLK 295

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               V   M    + P+V TY  LI+G    G++ +AF     M +  + PD V +N LI
Sbjct: 296 EAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLI 355

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
             C +   +  AF +L EM+ +   V P+ +T   ++K     G++D A      + +  
Sbjct: 356 NGCLEWSKISEAFKLLEEMSEK--GVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESG 413

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
                  Y   IN   + G+   A    D+M +K +  D V L+ ++       K+E A+
Sbjct: 414 FSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAY 473

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++L  A+ +G  +  +SY +L+       N  +AL+L++ MK  ++ P+  T N +I  L
Sbjct: 474 KLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGL 533

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   +  + +  L+++   GL P+  TY+ +L    R+ DVE      ++  E+   P++
Sbjct: 534 CQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDV 593

Query: 445 VMFKCII---GMC 454
             F C I   G+C
Sbjct: 594 --FTCNILLRGLC 604



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 181/421 (42%), Gaps = 43/421 (10%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKV 143
           + +P+ +  +  +     S     AFQ+ + ++   L+ +     TL+ +  +   S  V
Sbjct: 130 LTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSV 189

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
               E F++ +  GI PNV+T+  +I G     +   A     +M   N  PD V +N +
Sbjct: 190 SFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTI 249

Query: 204 ITACGQSGAVDRAFDVLAEMNAE---------------------------------VHPV 230
           + A  + G +  A D+L +M +                                   + +
Sbjct: 250 LDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFA 288
            PD  T   L+    N G+++ A ++   +   N+K  P+V  Y   IN C +      A
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEAFKLRDEME--NLKLLPDVVSYNTLINGCLEWSKISEA 367

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             + ++M++KGV P+ V  + ++ +    GK++ A   + + +  G S   ++Y++L+  
Sbjct: 368 FKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLING 427

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              A N  +A    + M    +K    T+N ++  LC   +L +  ++LS  +  G   +
Sbjct: 428 YCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFID 487

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLN 465
            ++Y  L+V   +  +V+  L L  + KE  +IP+ V + CIIG    C +  +    LN
Sbjct: 488 EVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLN 547

Query: 466 E 466
           E
Sbjct: 548 E 548



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 21/317 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAFRFFKLVPNP 90
           L R+ ++ E   LL    ++G   +D+V +      +F      +A+K      +    P
Sbjct: 463 LCREKKLEEAYKLLSSARKRGYF-IDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIP 521

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           +  T+N ++        +E A   L  + E+GL  D   Y T++    + G V+  F+  
Sbjct: 522 STVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFH 581

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           ++MV    +P+V T   L+ G    G + KA   +    SK    D V +N LIT+  + 
Sbjct: 582 NKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKE 641

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE-VYKMIHKYNIKGTP 269
           G +D AF++L+EM  E   + PDH T  A++ A  ++G++  A E + KM+ K  +    
Sbjct: 642 GRLDDAFNLLSEM--EEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLP--- 696

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
                      Q    +   +V    T +      V  S  I      GK + A  I  E
Sbjct: 697 ----------XQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGE 746

Query: 330 AKNQGISVGIISYSSLM 346
           +K +GI+V   +Y +LM
Sbjct: 747 SKQKGITVDKSTYINLM 763


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 198/428 (46%), Gaps = 8/428 (1%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           ++++N +I    R  R+ E   L++ M  KG    D  Y      +CK+ + I EA    
Sbjct: 280 VNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCR-IDEAQALL 338

Query: 85  KLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             VP P +  FN L++    + + +E    V   +   G   D   ++TL+    K G  
Sbjct: 339 SKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLF 398

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
            +  E+ ++M   G +PN++TY  LIDG  K GQ+ +A      M +K    + V +NAL
Sbjct: 399 GSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNAL 458

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I+A  + G +  A D+  EM+++     PD  T  +L+       +++ A  +Y+ +   
Sbjct: 459 ISALCKHGKIHEALDMFGEMSSK--GCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLE 516

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            +      +   I+   + G+ + A  + +DM  +G   DE+  + LI      G VE  
Sbjct: 517 GVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKG 576

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             + +E   +G++  II+ + L+     A     ALE    M      P + T N+LI  
Sbjct: 577 LGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLING 636

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++ + + +   +++ G+ P++ITY+ L+    R+   +    LL +  E+G +PN
Sbjct: 637 LCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPN 696

Query: 444 LVMFKCII 451
            V +  ++
Sbjct: 697 DVTWNILV 704



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 170/416 (40%), Gaps = 69/416 (16%)

Query: 11  FPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV 70
           F Y    +  Y  DV       N L ++G     ++L+ DM+ KG               
Sbjct: 368 FVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG--------------- 412

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           CK                 P L+T+ +L+         E A  +LR +   G   +   Y
Sbjct: 413 CK-----------------PNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGY 455

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             LI+   K GK+    ++F EM + G +P++ T+ +LI G  +  ++  A   Y  M  
Sbjct: 456 NALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVL 515

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           + V  + V FN LI A  + G +  A  ++ +M     P+  D IT   L+KA    G V
Sbjct: 516 EGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPL--DEITYNGLIKALCKTGAV 573

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           ++                                      ++++M +KG+ P  +  + L
Sbjct: 574 EK-----------------------------------GLGLFEEMIRKGLTPSIITCNIL 598

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I+    AGKV  A E +++  ++G S  I++Y+SL+         Q+AL L+E +++  +
Sbjct: 599 INGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGI 658

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +P   T N LI  LC          +L      G  PN +T++IL+    ++ + E
Sbjct: 659 QPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQSNSE 714



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 169/349 (48%), Gaps = 13/349 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P   TF ++M       + + A  +LR + + G   +  +Y TLI   +K  +VD   +
Sbjct: 207 SPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALK 266

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G  P+V+T+  +I G  +  +V +       M  K   P+ + +  L+    
Sbjct: 267 LLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLC 326

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE-VY-KMIHKYNIK 266
           ++  +D A  +L+++        P+ +    L+      G+++ A   VY KMI+   + 
Sbjct: 327 KTCRIDEAQALLSKVPG------PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYV- 379

Query: 267 GTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P+V+T +  +N   + G +  A  + +DM  KG  P+    + LID     G++E A 
Sbjct: 380 --PDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAG 437

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            IL+E   +G S+  + Y++L+ A        +AL+++  M S   KP + T N+LI  L
Sbjct: 438 LILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGL 497

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           C  D++   + +  DM   G+  N++T++ L+ A  R+ +++  L L++
Sbjct: 498 CRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVN 546



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 151/360 (41%), Gaps = 31/360 (8%)

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           EP+  +Y  ++D        + A   +  M SK V P+   F  ++ A      VD A  
Sbjct: 172 EPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACL 231

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP----EVYTI 274
           +L +M    H   P+ +    L+ A +   + DR  E  K++ +  + G P       T+
Sbjct: 232 LLRDMTK--HGCVPNSMIYQTLIDALS---KRDRVDEALKLLEEMFLMGCPPDVNTFNTV 286

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
               C      E A  + D M  KG  P+++    L+       +++ A  +L +     
Sbjct: 287 IYGFCRLNRVLEGA-KLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGP- 344

Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
               ++ +++L+ G   N +  +    +Y+ M +    P V T + L+  LC        
Sbjct: 345 ---NVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSA 401

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
           +E+++DM + G  PN  TY+IL+    +K  +E   ++L +    G   N V +  +I  
Sbjct: 402 LELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISA 461

Query: 453 MC--SRRYEKARTLNE--------HVLSFNS---GRPQIENKWTSLALMVYREAIVAGTI 499
           +C   + +E      E         + +FNS   G  +++    +LAL  YR+ ++ G I
Sbjct: 462 LCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALAL--YRDMVLEGVI 519



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 1/149 (0%)

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LID  G A   +    +L + K +GI      +  +M     A    +A  L   MK + 
Sbjct: 110 LIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVY 169

Query: 370 L-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
             +P+  + N ++  L  G+       V  DM S G+ PN  T+ +++ A    ++V+  
Sbjct: 170 CCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNA 229

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
            +LL    + G +PN ++++ +I   S+R
Sbjct: 230 CLLLRDMTKHGCVPNSMIYQTLIDALSKR 258


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 216/448 (48%), Gaps = 25/448 (5%)

Query: 24  DVSEQLHSYNRL--IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           D +E L+S   L  +R   I+  I L++   R G LD+   Y  R       Q  I E  
Sbjct: 382 DKAELLYSNMSLMNLRPNGITYSI-LIDSFCRSGRLDVAISYFDRMI-----QDGIGE-- 433

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
                    T+  +N L++      D   A  +   +   G++     +T+LI+   K  
Sbjct: 434 ---------TVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDL 484

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +V   F+++++M++ GI PNV+T+ ALI G     ++A+A   +  +  + +KP  V +N
Sbjct: 485 QVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYN 544

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    + G +D+AF++L +M+ +   + PD  T   L+    + G+V +A++    +H
Sbjct: 545 VLIEGYCRDGKIDKAFELLEDMHQK--GLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLH 602

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K N+K     Y+  ++   Q G    A S   +M ++G+  D V  + LID A      +
Sbjct: 603 KQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRK 662

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
             F++L++  +QG+    + Y+S++   S   +++KA E ++ M + +  P V T  AL+
Sbjct: 663 TFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALM 722

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   ++ +   +   M++  + PN+ITY   L    ++ +++  +  L  A   G++
Sbjct: 723 NGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIG-LHHAMLKGLL 781

Query: 442 PNLVMFKCII-GMC--SRRYEKARTLNE 466
            N V    II G C   R +E  + L+E
Sbjct: 782 ANTVTHNIIIRGFCKLGRFHEATKVLSE 809



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 163/333 (48%), Gaps = 16/333 (4%)

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           ++ T+N+L+  +C   + SE A +V R +   GL AD   Y TL+    +  + +A  ++
Sbjct: 259 SIVTYNVLIHGLCKGDRVSE-AVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQL 317

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF------GAYGIMRSKNVKPDRVVFNAL 203
             EMV  G  P       L+DG  K G++  A+      G +G +      P+  V+NAL
Sbjct: 318 MDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFV------PNLFVYNAL 371

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I +  + G +D+A   L   N  +  + P+ IT   L+ +   +G++D A   +  + + 
Sbjct: 372 INSLCKGGDLDKA--ELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQD 429

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            I  T   Y   IN   + GD   A S++ +MT KGV P     ++LI       +V+ A
Sbjct: 430 GIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKA 489

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           F++  +  + GI+  + ++++L+    +     +A EL++ +   K+KPT  T N LI  
Sbjct: 490 FKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEG 549

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            C   ++ K  E+L DM   GL P+T TY  L+
Sbjct: 550 YCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLI 582



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 203/439 (46%), Gaps = 14/439 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           + E +++YN LI    + G +S    L  +M  KG+      + +     CK  + +++A
Sbjct: 431 IGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQ-VQKA 489

Query: 81  FRFF-KLVPN---PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           F+ + K++ N   P + TF  L+S +C+++K +E +     LV E  +K     Y  LI 
Sbjct: 490 FKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELV-ERKIKPTEVTYNVLIE 548

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              + GK+D  FE+  +M   G+ P+ +TY  LI G    G+V+KA      +  +NVK 
Sbjct: 549 GYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKL 608

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + + ++AL+    Q G +  A     EM      ++ D +    L+             +
Sbjct: 609 NEMCYSALLHGYCQEGRLMEALSASCEMIQR--GINMDLVCHAVLIDGALKQPDRKTFFD 666

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + K +H   ++    +YT  I+  S+ G ++ A   +D M  +   P+ V  +AL++   
Sbjct: 667 LLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLC 726

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            AG+++ A  + +  +   +    I+Y   +   +   N ++A+ L+  M    L  TV 
Sbjct: 727 KAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTV- 785

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N +I   C   +  +  +VLS+M   G+ P+ +TYS L+    R  +V   + L    
Sbjct: 786 THNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTM 845

Query: 436 KEDGVIPNLVMFKCIIGMC 454
              G+ P+LV +  +I  C
Sbjct: 846 LNRGLEPDLVAYNLLIYGC 864



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 184/426 (43%), Gaps = 17/426 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF-----FKLVPN 89
           L +QG+I +  +L+  + R G +    VY+A   ++CK     K    +       L PN
Sbjct: 340 LRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPN 399

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
               T+++L+ S C S +         R++Q+ G+      Y +LI    K G + A   
Sbjct: 400 GI--TYSILIDSFCRSGRLDVAISYFDRMIQD-GIGETVYAYNSLINGQCKFGDLSAAES 456

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM N G+EP   T+ +LI G  K  QV KAF  Y  M    + P+   F ALI+   
Sbjct: 457 LFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLC 516

Query: 209 QSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
            +  +  A   FD L E       + P  +T   L++     G++D+A E+ + +H+  +
Sbjct: 517 STNKMAEASELFDELVE-----RKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGL 571

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 Y   I+    TG    A    DD+ K+ V  +E+  SAL+      G++  A  
Sbjct: 572 VPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALS 631

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
              E   +GI++ ++ ++ L+       + +   +L + M    L+P      ++I    
Sbjct: 632 ASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYS 691

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
                 K  E    M +    PN +TY+ L+    +  +++   +L  + +   V PN +
Sbjct: 692 KEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSI 751

Query: 446 MFKCII 451
            + C +
Sbjct: 752 TYGCFL 757



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 165/382 (43%), Gaps = 39/382 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G+I +  +LLEDM +KGL+                             
Sbjct: 542 TYNVLIEGYCRDGKIDKAFELLEDMHQKGLV----------------------------- 572

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P   T+  L+S   S+     A   +  + +  +K +   Y+ L+    + G++   
Sbjct: 573 ---PDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEA 629

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
                EM+  GI  ++  +  LIDG  K       F     M  + ++PD V++ ++I  
Sbjct: 630 LSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDT 689

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G+  +AF+    M  E     P+ +T  ALM     AG++DRA  ++K +   N+ 
Sbjct: 690 YSKEGSFKKAFECWDLMVTE--ECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVP 747

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y   ++  ++ G+ + A  ++  M K G++ + V  + +I      G+   A ++
Sbjct: 748 PNSITYGCFLDNLTKEGNMKEAIGLHHAMLK-GLLANTVTHNIIIRGFCKLGRFHEATKV 806

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L E    GI    ++YS+L+     + N   +++L++ M +  L+P +   N LI   C 
Sbjct: 807 LSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCV 866

Query: 387 GDQLPKTMEVLSDMKSLGLCPN 408
             +L K  E+  DM   G+ P+
Sbjct: 867 NGELDKAFELRDDMLRRGIIPD 888



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 92/440 (20%), Positives = 176/440 (40%), Gaps = 74/440 (16%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           FN+L+     S     A  +++L+    L  + +  + L+    K  K   ++E+F E V
Sbjct: 158 FNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESV 217

Query: 155 NAGIEPNVH-----------------------------------TYGALIDGCAKAGQVA 179
           NAG+ P+ +                                   TY  LI G  K  +V+
Sbjct: 218 NAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVS 277

Query: 180 KA------FGAYGI-----------------------------MRSKNVKPDRVVFNALI 204
           +A       G  G+                             M      P     + L+
Sbjct: 278 EAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLV 337

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G +D A++++ ++        P+     AL+ +    G +D+A  +Y  +   N
Sbjct: 338 DGLRKQGKIDDAYELVVKVGR--FGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMN 395

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           ++     Y+I I+   ++G  + A S +D M + G+       ++LI+     G + AA 
Sbjct: 396 LRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAE 455

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +  E  N+G+     +++SL+         QKA +LY  M    + P V T  ALI+ L
Sbjct: 456 SLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGL 515

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C  +++ +  E+  ++    + P  +TY++L+    R   ++    LL    + G++P+ 
Sbjct: 516 CSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDT 575

Query: 445 VMFKCII-GMCSR-RYEKAR 462
             ++ +I G+CS  R  KA+
Sbjct: 576 YTYRPLISGLCSTGRVSKAK 595



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 133/310 (42%), Gaps = 39/310 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L   GR+S+  D ++D+ ++ +   +  Y A     C+  +   A+  +    +   N  
Sbjct: 585 LCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMD 644

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L    +L+       D +  F +L+ + + GL+ D  +YT++I T +K G     FE + 
Sbjct: 645 LVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWD 704

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF----------- 200
            MV     PNV TY AL++G  KAG++ +A   +  M++ NV P+ + +           
Sbjct: 705 LMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEG 764

Query: 201 -----------------------NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
                                  N +I    + G    A  VL+EM    + + PD +T 
Sbjct: 765 NMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTE--NGIFPDCVTY 822

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+     +G V  + +++  +    ++     Y + I  C   G+ + A  + DDM +
Sbjct: 823 STLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLR 882

Query: 298 KGVIPDEVFL 307
           +G+IPD  +L
Sbjct: 883 RGIIPDNKYL 892


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 204/427 (47%), Gaps = 9/427 (2%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RIS+ + L++ M   G     +    + H  F +  K+ +A+    R  +    P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 228

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            ++++      D++ A  +L  ++ A ++AD  ++ T+I +  K   VD    +F EM  
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            GI PNV TY +LI      G+ + A      M  K + P+ V FNALI A  + G    
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  +  +M      +DPD  T  +L+       ++D+A+++++ +   +       Y   
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I    ++   E    ++ +M+ +G++ D V  + LI    H G  + A ++ ++  + G+
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466

Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
              I++YS L+ G C+N K  +KALE++++M+  ++K  +     +I  +C   ++    
Sbjct: 467 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           ++   +   G+ PN +TY+ ++     K  ++    LL + KEDG +PN   +  +I   
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585

Query: 455 SRRYEKA 461
            R  +KA
Sbjct: 586 LRDGDKA 592



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 184/439 (41%), Gaps = 46/439 (10%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF--RFF 84
           +N+L+    +  +    I L E M+R  ++     Y+      C+ SQ ++  A   +  
Sbjct: 88  FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 147

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           KL   P++ T + L++     K    A  ++  + E G + D   +TTLI       K  
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 207

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +   MV  G +PN+ TYG +++G  K G    A      M +  ++ D V+FN +I
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTII 267

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            +  +   VD A ++  EM  E   + P+ +T                            
Sbjct: 268 DSLCKYRHVDDALNLFKEM--ETKGIRPNVVT---------------------------- 297

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
                  Y+  I+C    G W  A  +  DM +K + P+ V  +ALID     GK   A 
Sbjct: 298 -------YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 350

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++  +   + I   I +Y+SL+          KA +++E M S    P V T N LI   
Sbjct: 351 KLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGF 410

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++    E+  +M   GL  +T+TY+ L+       D +    +  Q   DGV P++
Sbjct: 411 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 470

Query: 445 VMFKCII-GMCSR-RYEKA 461
           + +  ++ G+C+  + EKA
Sbjct: 471 MTYSILLDGLCNNGKLEKA 489



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 176/375 (46%), Gaps = 9/375 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G     ++LL  ME   +     +++    ++CK  + + +A   FK +     
Sbjct: 233 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK-YRHVDDALNLFKEMETKGI 291

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T++ L+S   S      A Q+L  + E  +  +   +  LI    K GK     +
Sbjct: 292 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 351

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ +M+   I+P++ TY +L++G     ++ KA   +  M SK+  PD V +N LI    
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC 411

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +S  V+   ++  EM+     +  D +T   L++   + G  D A++V+K +    +   
Sbjct: 412 KSKRVEDGTELFREMSHR--GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 469

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+I ++     G  E A  V+D M K  +  D    + +I+    AGKV+  +++  
Sbjct: 470 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 529

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 387
               +G+   +++Y++++    + +  Q+A  L + MK     P   T N LI A L DG
Sbjct: 530 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDG 589

Query: 388 DQLPKTMEVLSDMKS 402
           D+   + E++ +M+S
Sbjct: 590 DK-AASAELIREMRS 603



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 19/232 (8%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLD 58
           D  K M +F          + D    + +YN LI+      R+ +  +L  +M  +GL+ 
Sbjct: 382 DKAKQMFEFMV--------SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 433

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQ 113
            D V +               A + FK      VP P + T+++L+    ++   E A +
Sbjct: 434 -DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP-PDIMTYSILLDGLCNNGKLEKALE 491

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           V   +Q++ +K D  +YTT+I    K+GKVD  +++F  +   G++PNV TY  +I G  
Sbjct: 492 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 551

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
               + +A+     M+     P+   +N LI A  + G    + +++ EM +
Sbjct: 552 SKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 118/283 (41%), Gaps = 37/283 (13%)

Query: 266 KGTPEVYTIAINCC----------SQTGDW-------------EFACSVYDDMTKKGVIP 302
           KG P +   +I+ C          S +GD+             + A  ++  M K   +P
Sbjct: 24  KGNPRIAPSSIDLCGMCYWGRAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLP 83

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
             V  + L+       K +    + ++ +   I  G+ +Y+ L+           AL L 
Sbjct: 84  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
             M  +  +P++ T+++L+   C G ++   + ++  M  +G  P+TIT++ L+      
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-----------RYEKARTLNEHVLS 470
           +     + L+ +  + G  PNLV +  ++ G+C R           + E A+ +   V+ 
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK-IEADVVI 262

Query: 471 FNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
           FN+    + + +    AL +++E    G  P V   S ++ CL
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 305


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 172/356 (48%), Gaps = 6/356 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N +++        E A ++ + +++  LK DC  Y + I+   K  +++    V
Sbjct: 250 PNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGV 309

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +++ +G+ PN  TY ALIDGC   G + KAF     M ++ +      +N LI A   
Sbjct: 310 LCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFL 369

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              ++ A D++ EM  +   V+PD +T    +      G   +A  ++  + + NI+ T 
Sbjct: 370 EKRIEEAEDMIKEMREK--GVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTV 427

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEIL 327
           E YT  I+   +      A   +    K+G++PD +  +ALID  GH   G ++ AF++L
Sbjct: 428 ETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALID--GHCVNGNIDRAFQLL 485

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E  N  +    +++++LM      +  ++A +L + MK   +KP   + N LI+     
Sbjct: 486 KEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKR 545

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
             +   +EV  +M SLG  P  +TY+ L+    +  + +    LL + +  G+ P+
Sbjct: 546 GDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPD 601



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 177/362 (48%), Gaps = 4/362 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++ TFN+++++       + A   +  ++  G+K +   Y T+I      GK +A  ++F
Sbjct: 216 SIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIF 275

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M +  ++P+ +TY + I    K  ++ +A G    +    + P+ V +NALI  C   
Sbjct: 276 KTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNK 335

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D+AF    EM      +     T   L+ A     +++ A ++ K + +  ++    
Sbjct: 336 GDLDKAFAYRDEMMN--RGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVV 393

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y I IN   + G+ + A S++D+M +K + P     ++LID  G   ++  A E  +++
Sbjct: 394 TYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKS 453

Query: 331 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             +G+   II +++L+ G C N  N  +A +L + M + K+ P   T N L+   C   +
Sbjct: 454 IKEGMLPDIIMFNALIDGHCVNG-NIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERK 512

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++L +MK  G+ P+ I+Y+ L+    ++ D++  L +  +    G  P L+ +  
Sbjct: 513 VEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNA 572

Query: 450 II 451
           +I
Sbjct: 573 LI 574



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 166/369 (44%), Gaps = 5/369 (1%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +P+P  S F++L  +  ++  +   F  L L +         ++  L++   +  K D  
Sbjct: 109 LPSPKPS-FHILQPILHTTTPT-VIFNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEA 166

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E  + M    I P   T  +L+    K  ++  A+  Y  M   N+K   V FN +I  
Sbjct: 167 LECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINI 226

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G   +A D +  M  EV+ V P+ +T   ++      G+ + A +++K +   N+K
Sbjct: 227 LCREGKWKKAKDFIGHM--EVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLK 284

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y   I+   +    E A  V   + + G++P+ V  +ALID   + G ++ AF  
Sbjct: 285 PDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAY 344

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             E  N+GI   + +Y+ L+ A    K  ++A ++ + M+   ++P V T N  I   C 
Sbjct: 345 RDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCR 404

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
                K + +  +M    + P   TY+ L+    +++ +        ++ ++G++P+++M
Sbjct: 405 CGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIM 464

Query: 447 FKCII-GMC 454
           F  +I G C
Sbjct: 465 FNALIDGHC 473


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 199/412 (48%), Gaps = 15/412 (3%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
           Y+A    V ++++++K A   FK +     +P + T+N+L+    ++ + E        +
Sbjct: 170 YNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEM 229

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           +  G   +   Y T+I    K  K+   F++   M   G+ PN+ +Y  +I+G  + GQ+
Sbjct: 230 ERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQM 289

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            +       M  +   PDRV FN LI      G   +A  + AEM    + + P+ +T  
Sbjct: 290 KETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK--NGLSPNVVTYT 347

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+ +   AG ++RA E    +    +      YT  I+  SQ G  + A  +  +M + 
Sbjct: 348 TLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVEN 407

Query: 299 GVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNW 355
           G  P  +  +ALI+  GH   G++E A  +LQE   +G    ++SYS+++ G C N +  
Sbjct: 408 GFTPTIITYNALIN--GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRN-QEL 464

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           +KA +L   M +  + P V+T ++LI  LC   +L +  ++  +M SLGL P+ +TY+ L
Sbjct: 465 EKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSL 524

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTL 464
           + A   + D++  L L  +  + G  P++V +  +I      SR  E  R L
Sbjct: 525 INAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLL 576



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 190/440 (43%), Gaps = 48/440 (10%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  +++YN LIR     G +   +    +MER G L     Y+      CK +K I EA
Sbjct: 199 VSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRK-IGEA 257

Query: 81  FRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           F+  +L+     NP L ++N++++ +C   +  E + ++L  + +     D   + TLI 
Sbjct: 258 FKLLRLMALKGLNPNLISYNVVINGLCREGQMKETS-EILEEMSKRRYVPDRVTFNTLIN 316

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
                G       +  EMV  G+ PNV TY  LI+   KAG + +A      MR + + P
Sbjct: 317 GYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHP 376

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           +   +  LI    Q G + +A+ ++ EM    +   P  IT  AL               
Sbjct: 377 NGRTYTTLIDGFSQQGFLKQAYQIMKEMVE--NGFTPTIITYNAL--------------- 419

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
                               IN     G  E A  +  +M ++G IPD V  S +I    
Sbjct: 420 --------------------INGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFC 459

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
              ++E AF++  E   +GIS  + +YSSL+      +   +  +L++ M S+ L P   
Sbjct: 460 RNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEV 519

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T  +LI A C    L K + +  +M   G  P+ +TY++L+    ++   +    LL + 
Sbjct: 520 TYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579

Query: 436 KEDGVIPNLVMFKCIIGMCS 455
             +  +PN + +  +I  C+
Sbjct: 580 LYEESVPNEITYNTLIDNCN 599



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 157/347 (45%), Gaps = 11/347 (3%)

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK-AF 182
           K+   ++  ++ +CA+   ++    + +   + G  P V +Y A++D   +  Q  K A 
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAE 188

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
           G +  M    V P+   +N LI     +G ++       EM  E +   P+ +T   ++ 
Sbjct: 189 GIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEM--ERNGCLPNVVTYNTIID 246

Query: 243 ACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKG 299
           A     ++ +  E +K++    +KG  P +  Y + IN   + G  +    + ++M+K+ 
Sbjct: 247 AYC---KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRR 303

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
            +PD V  + LI+   + G    A  +  E    G+S  +++Y++L+ +   A N  +A+
Sbjct: 304 YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAM 363

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           E  + M+   L P   T   LI        L +  +++ +M   G  P  ITY+ L+   
Sbjct: 364 EFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGH 423

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
                +E    LL +  E G IP++V +  II G C ++  EKA  L
Sbjct: 424 CILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQL 470



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 183/416 (43%), Gaps = 25/416 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R+G++ E  ++LE+M ++  +     ++      C      +      ++V N   
Sbjct: 281 NGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLS 340

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  L++    + +   A + L  +++ GL  + + YTTLI   ++ G +   +++
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EMV  G  P + TY ALI+G    G++  A G    M  +   PD V ++ +I+   +
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +++AF +  EM A+   + PD  T  +L++      ++    ++++ +    +    
Sbjct: 461 NQELEKAFQLKVEMVAK--GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDE 518

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  IN     GD + A  ++D+M +KG  PD V  + LI+      + + A  +L +
Sbjct: 519 VTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLK 578

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +      I+Y++L+  C+N + ++ AL                   AL+   C    
Sbjct: 579 LLYEESVPNEITYNTLIDNCNNLE-FKSAL-------------------ALMKGFCMKGL 618

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           + +   VL  M   G   N   Y++++    +  ++E    L  +    G  P+ V
Sbjct: 619 MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSV 674



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 144/342 (42%), Gaps = 59/342 (17%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN-- 89
           N + + G ++  ++ L+ M  +GL    + Y     +    Q  +K+A++  K +V N  
Sbjct: 351 NSMCKAGNLNRAMEFLDQMRDRGLHPNGRTY-TTLIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 90  -PTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
            PT+ T+N L++   +    +D+ G  Q +    E G   D   Y+T+I+   ++ +++ 
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEM---IERGFIPDVVSYSTIISGFCRNQELEK 466

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            F++  EMV  GI P+V TY +LI G  K  ++ +    +  M S  + PD V + +LI 
Sbjct: 467 AFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLIN 526

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVD---------------------------------P 232
           A    G +D+A  +  EM  +    D                                 P
Sbjct: 527 AYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVP 586

Query: 233 DHITIGALMKACAN---------------AGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
           + IT   L+  C N                G ++ A  V + + +   K   EVY + I+
Sbjct: 587 NEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIH 646

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
             S+ G+ E A ++Y +M   G  P  V + AL     H GK
Sbjct: 647 GHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGK 688



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 131/321 (40%), Gaps = 36/321 (11%)

Query: 274 IAINCCSQTGDWEFAC---SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           + +N   +TG+  F C   S Y   +   V    V   A ++       +  A  I+  A
Sbjct: 105 VVVNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVKSCARVNL------INKALSIVNLA 158

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALE-LYEHMKSIKLKPTVSTMNALITALCDGDQ 389
           K+ G   G++SY++++ A    K   K  E +++ M    + P V T N LI   C    
Sbjct: 159 KSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGN 218

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L   +    +M+  G  PN +TY+ ++ A  +   +     LL      G+ PNL+ +  
Sbjct: 219 LEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNV 278

Query: 450 II-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWT--------------SLALMVYREAI 494
           +I G+C     K  +    +L   S R  + ++ T                AL+++ E +
Sbjct: 279 VINGLCREGQMKETS---EILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMV 335

Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN---LCSLIDGFGE-- 549
             G  P V   + ++  +    N +   R +E L    D     N     +LIDGF +  
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLN---RAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQG 392

Query: 550 YDPRAFSLLEEAASFGIVPCV 570
           +  +A+ +++E    G  P +
Sbjct: 393 FLKQAYQIMKEMVENGFTPTI 413


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 205/427 (48%), Gaps = 9/427 (2%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RIS+ + L++ M   G     +    + H  F +  K+ +A+    R  +    P L T+
Sbjct: 94  RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 152

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            ++++      D + AF +L  ++ A ++AD  ++ T+I +  K   VD    +F EM  
Sbjct: 153 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 212

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            GI PNV TY +LI      G+ + A      M  K + P+ V FNALI A  + G    
Sbjct: 213 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 272

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  +  +M      +DPD  T  +L+       ++D+A+++++ +   +     + Y   
Sbjct: 273 AEKLHDDMIKR--SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 330

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I    ++   E    ++ +M+ +G++ D V  + LI    H G  + A ++ ++  + G+
Sbjct: 331 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 390

Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
              I++YS L+ G C+N K  +KALE++++M+  ++K  +     +I  +C   ++    
Sbjct: 391 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 449

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           ++   +   G+ PN +TY+ ++     K  ++    LL + KEDG +P+   +  +I   
Sbjct: 450 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 509

Query: 455 SRRYEKA 461
            R  +KA
Sbjct: 510 LRDGDKA 516



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 168/378 (44%), Gaps = 6/378 (1%)

Query: 88  PNPTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           P P++  FN L+S  A  K  D   +  +L  + + G +      ++L+       ++  
Sbjct: 38  PLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISD 97

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              +  +MV  G  P+  T+  LI G     + ++A      M  +  +P+ V +  ++ 
Sbjct: 98  AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 157

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G +D AF++L +M  E   ++ D +    ++ +      VD A  ++K +    I
Sbjct: 158 GLCKRGDIDLAFNLLNKM--EAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGI 215

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           +     Y+  I+C    G W  A  +  DM +K + P+ V  +ALID     GK   A +
Sbjct: 216 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 275

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +  +   + I   I +Y+SL+          KA +++E M S    P + T N LI   C
Sbjct: 276 LHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFC 335

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              ++    E+  +M   GL  +T+TY+ L+       D +    +  Q   DGV P+++
Sbjct: 336 KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIM 395

Query: 446 MFKCII-GMCSR-RYEKA 461
            +  ++ G+C+  + EKA
Sbjct: 396 TYSILLDGLCNNGKLEKA 413



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 174/375 (46%), Gaps = 9/375 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I    +LL  ME   +     +++    ++CK  + + +A   FK +     
Sbjct: 157 NGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK-YRHVDDALNLFKEMETKGI 215

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T++ L+S   S      A Q+L  + E  +  +   +  LI    K GK     +
Sbjct: 216 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 275

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M+   I+P++ TY +LI+G     ++ KA   +  M SK+  PD   +N LI    
Sbjct: 276 LHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFC 335

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +S  V+   ++  EM+     +  D +T   L++   + G  D A++V+K +    +   
Sbjct: 336 KSKRVEDGTELFREMSHR--GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 393

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+I ++     G  E A  V+D M K  +  D    + +I+    AGKV+  +++  
Sbjct: 394 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 453

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 387
               +G+   +++Y++++    + +  Q+A  L + MK     P   T N LI A L DG
Sbjct: 454 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 513

Query: 388 DQLPKTMEVLSDMKS 402
           D+   + E++ +M+S
Sbjct: 514 DK-AASAELIREMRS 527



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 160/377 (42%), Gaps = 21/377 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           + L +   + + ++L ++ME KG+      Y +    +C   +    +     ++    N
Sbjct: 192 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 251

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSGKVDA 145
           P L TFN L+         EG F     + +  +K     D   Y +LI       ++D 
Sbjct: 252 PNLVTFNALIDAFVK----EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK 307

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++F  MV+    P++ TY  LI G  K+ +V      +  M  + +  D V +  LI 
Sbjct: 308 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 367

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
                G  D A  V  +M ++  P  PD +T   L+    N G++++A EV+  + K  I
Sbjct: 368 GLFHDGDCDNAQKVFKQMVSDGVP--PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 425

Query: 266 KGTPEVYTIAINCCSQTGD----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K    +YT  I    + G     W+  CS    ++ KGV P+ V  + +I        ++
Sbjct: 426 KLDIYIYTTMIEGMCKAGKVDDGWDLFCS----LSLKGVKPNVVTYNTMISGLCSKRLLQ 481

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A+ +L++ K  G      +Y++L+ A     +   + EL   M+S +     ST+  + 
Sbjct: 482 EAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVA 541

Query: 382 TALCDGDQLPKTMEVLS 398
             L DG      +++LS
Sbjct: 542 NMLHDGRLDKSFLDMLS 558



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 19/232 (8%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLD 58
           D  K M +F          + D    L +YN LI+      R+ +  +L  +M  +GL+ 
Sbjct: 306 DKAKQMFEFMV--------SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 357

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQ 113
            D V +               A + FK      VP P + T+++L+    ++   E A +
Sbjct: 358 -DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP-PDIMTYSILLDGLCNNGKLEKALE 415

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           V   +Q++ +K D  +YTT+I    K+GKVD  +++F  +   G++PNV TY  +I G  
Sbjct: 416 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 475

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
               + +A+     M+     PD   +N LI A  + G    + +++ EM +
Sbjct: 476 SKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 527



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKL--KPTVSTMNALITALCDGDQLPKTMEV 396
           I  ++ L+ A +  K +   + L    K +KL  +P++ T+++L+   C G ++   + +
Sbjct: 42  IFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVAL 101

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
           +  M  +G  P+TIT++ L+      +     + L+ +  + G  PNLV +  ++ G+C 
Sbjct: 102 VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 161

Query: 456 R-----------RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVE 503
           R           + E A+ +   V+ FN+    + + +    AL +++E    G  P V 
Sbjct: 162 RGDIDLAFNLLNKMEAAK-IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 220

Query: 504 VVSKVLGCL 512
             S ++ CL
Sbjct: 221 TYSSLISCL 229


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 204/427 (47%), Gaps = 9/427 (2%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RIS+ + L++ M   G     +    + H  F +  K+ +A+    R  +    P L T+
Sbjct: 132 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 190

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            ++++      D++ A  +L  ++ A ++AD  ++ T+I +  K   VD    +F EM  
Sbjct: 191 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 250

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            GI PNV TY +LI      G+ + A      M  K + P+ V FNALI A  + G    
Sbjct: 251 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 310

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  +  +M      +DPD  T  +L+       ++D+A+++++ +   +       Y   
Sbjct: 311 AEKLYDDMIK--RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 368

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I    ++   E    ++ +M+ +G++ D V  + LI    H G  + A ++ ++  + G+
Sbjct: 369 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 428

Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
              I++YS L+ G C+N K  +KALE++++M+  ++K  +     +I  +C   ++    
Sbjct: 429 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 487

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           ++   +   G+ PN +TY+ ++     K  ++    LL + KEDG +PN   +  +I   
Sbjct: 488 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 547

Query: 455 SRRYEKA 461
            R  +KA
Sbjct: 548 LRDGDKA 554



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 184/439 (41%), Gaps = 46/439 (10%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF--RFF 84
           +N+L+    +  +    I L E M+R  ++     Y+      C+ SQ ++  A   +  
Sbjct: 50  FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 109

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           KL   P++ T + L++     K    A  ++  + E G + D   +TTLI       K  
Sbjct: 110 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 169

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +   MV  G +PN+ TYG +++G  K G    A      M +  ++ D V+FN +I
Sbjct: 170 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTII 229

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            +  +   VD A ++  EM  E   + P+ +T                            
Sbjct: 230 DSLCKYRHVDDALNLFKEM--ETKGIRPNVVT---------------------------- 259

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
                  Y+  I+C    G W  A  +  DM +K + P+ V  +ALID     GK   A 
Sbjct: 260 -------YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAE 312

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++  +   + I   I +Y+SL+          KA +++E M S    P V T N LI   
Sbjct: 313 KLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGF 372

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++    E+  +M   GL  +T+TY+ L+       D +    +  Q   DGV P++
Sbjct: 373 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 432

Query: 445 VMFKCII-GMCSR-RYEKA 461
           + +  ++ G+C+  + EKA
Sbjct: 433 MTYSILLDGLCNNGKLEKA 451



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 176/375 (46%), Gaps = 9/375 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G     ++LL  ME   +     +++    ++CK  + + +A   FK +     
Sbjct: 195 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK-YRHVDDALNLFKEMETKGI 253

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T++ L+S   S      A Q+L  + E  +  +   +  LI    K GK     +
Sbjct: 254 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 313

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ +M+   I+P++ TY +L++G     ++ KA   +  M SK+  PD V +N LI    
Sbjct: 314 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFC 373

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +S  V+   ++  EM+     +  D +T   L++   + G  D A++V+K +    +   
Sbjct: 374 KSKRVEDGTELFREMSH--RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 431

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+I ++     G  E A  V+D M K  +  D    + +I+    AGKV+  +++  
Sbjct: 432 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 491

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 387
               +G+   +++Y++++    + +  Q+A  L + MK     P   T N LI A L DG
Sbjct: 492 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDG 551

Query: 388 DQLPKTMEVLSDMKS 402
           D+   + E++ +M+S
Sbjct: 552 DK-AASAELIREMRS 565



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 19/232 (8%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLD 58
           D  K M +F          + D    + +YN LI+      R+ +  +L  +M  +GL+ 
Sbjct: 344 DKAKQMFEFMV--------SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 395

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQ 113
            D V +               A + FK      VP P + T+++L+    ++   E A +
Sbjct: 396 -DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP-PDIMTYSILLDGLCNNGKLEKALE 453

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           V   +Q++ +K D  +YTT+I    K+GKVD  +++F  +   G++PNV TY  +I G  
Sbjct: 454 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 513

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
               + +A+     M+     P+   +N LI A  + G    + +++ EM +
Sbjct: 514 SKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 565



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 104/238 (43%), Gaps = 14/238 (5%)

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  ++  M K   +P  V  + L+       K +    + ++ +   I  G+ +Y+ L+ 
Sbjct: 31  AIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILIN 90

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                     AL L   M  +  +P++ T+++L+   C G ++   + ++  M  +G  P
Sbjct: 91  CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 150

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 456
           +TIT++ L+      +     + L+ +  + G  PNLV +  ++ G+C R          
Sbjct: 151 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 210

Query: 457 -RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
            + E A+ +   V+ FN+    + + +    AL +++E    G  P V   S ++ CL
Sbjct: 211 NKMEAAK-IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 267


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 180/372 (48%), Gaps = 6/372 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P L++++ L++   +++D   A  + RL+   +E+ L+ D  L++ LI+  A++   DA 
Sbjct: 188 PDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAA 247

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALIT 205
            E+       G+ P  +   ALI     AG+VA+A   +     +  +KP    +NAL+ 
Sbjct: 248 LELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRAYNALLK 307

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G++  A  VL EM+     V PD  T   L+ A   AG+ + AR + K +    +
Sbjct: 308 GYVRIGSLKNAEQVLDEMSQ--CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGV 365

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K +  V++  +      GDW+ A +V  +M   GV PD  F + +ID  G    +  A +
Sbjct: 366 KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMD 425

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
                + + I   ++++++L+ A        +A+EL+E M+     P  +T N +I  L 
Sbjct: 426 AFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLG 485

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           + ++      +LS+MK  GL PN ITY+ L+    R    +  +  +   K DG+ P+  
Sbjct: 486 EQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPT 545

Query: 446 MFKCIIGMCSRR 457
           M+  ++   ++R
Sbjct: 546 MYHALVNAYAQR 557



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 164/342 (47%), Gaps = 5/342 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P    +N L+         + A QVL  + + G+  D   Y+ L+    ++G+ ++   
Sbjct: 296 KPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARI 355

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G++P+ + +  ++ G    G   KAF     M++  V+PDR  +N +I   G
Sbjct: 356 LLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFG 415

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +  A D    M  E   ++PD +T   L+ A    G+ DRA E+++ + + N    
Sbjct: 416 KYNCLGHAMDAFDRMREE--EIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPG 473

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I IN   +   WE   ++  +M ++G++P+ +  + L+D  G +G+ + A + ++
Sbjct: 474 TTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIE 533

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             K  G+      Y +L+ A +       AL + + MK+  L+ ++  +N+LI A  +  
Sbjct: 534 AMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDR 593

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEV 427
           ++ +   VL  MK  GL P+ ITY+ L   L+  E+ D V V
Sbjct: 594 RVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFDKVPV 635



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 135/296 (45%), Gaps = 2/296 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P+   F+ +++      D + AF VLR +Q +G++ D   Y  +I T  K   +    +
Sbjct: 366 KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMD 425

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F  M    IEP+V T+  LID   K G+  +A   +  MR  N  P    +N +I   G
Sbjct: 426 AFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLG 485

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +    +    +L+EM  +   + P+ IT   L+     +G+   A +  + +    +K +
Sbjct: 486 EQERWEGVEAMLSEMKEQ--GLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPS 543

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P +Y   +N  +Q G  + A +V   M   G+    + L++LI+  G   +V  AF +LQ
Sbjct: 544 PTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQ 603

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
             K  G+   +I+Y++LM A    + + K   +YE M +    P       L +AL
Sbjct: 604 FMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSAL 659


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 190/394 (48%), Gaps = 20/394 (5%)

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M++ G+ PNV+TY  L+      G   +A      MR     P+ V +N L+ A  +
Sbjct: 145 FDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCR 204

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G VDRA + L +M  E   + P+ +T  +++     AG+++ AR+V+  + K  +    
Sbjct: 205 AGEVDRA-ERLVDMMRE-GGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDG 262

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +    + G    A SV+ +MT+KG++PD V  ++LI     AG +E A  +++E
Sbjct: 263 VSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVRE 322

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            + +G+ +  I++++L+           AL     M+  +++P+V   NALI   C   +
Sbjct: 323 MRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGR 382

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  E++ +M++ G+ P+ +TYS +L A  +  D      L  Q  E+GV+P+ + +  
Sbjct: 383 MDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSS 442

Query: 450 IIGMCSRRYEKARTLNEHVLSFNS---GRPQIENKWTSL------------ALMVYREAI 494
           +I +     E+ R  + HVL  N    G    E  +TSL            AL ++ E +
Sbjct: 443 LIRVLC---EEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMV 499

Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
            AG +P V   S ++  L         +RL+  L
Sbjct: 500 KAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKL 533



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 181/403 (44%), Gaps = 21/403 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPN 89
           N + + GR+ +   + ++M ++GL      Y+      CK   S +A+       +    
Sbjct: 235 NGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIM 294

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TF  L+ V   + + E A  ++R ++E GL+ +   +T LI    K G +D     
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLA 354

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM    I+P+V  Y ALI+G    G++ +A      M +K VKPD V ++ +++A  +
Sbjct: 355 VREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCK 414

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G    AF +  +M    + V PD IT  +L++      ++  A  ++K +    ++   
Sbjct: 415 NGDTHSAFQLNQQMLE--NGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDE 472

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  I+   + G+ E A S++D+M K GV+PD V  S LI+    + + + A  +L +
Sbjct: 473 VTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFK 532

Query: 330 AKNQGISVGIISYSSLMGACSNAK---------------NWQKALELYEHMKSIKLKPTV 374
             ++      I Y +LM  C NA+                  +A ++Y+ +         
Sbjct: 533 LYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDG 592

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           S  + LI   C    + K +     M   G  PN+ T +I L+
Sbjct: 593 SVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNS-TSTISLI 634



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 137/320 (42%), Gaps = 53/320 (16%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI      GR+ E  +L+ +ME KG+                               
Sbjct: 370 YNALINGYCMVGRMDEARELVREMEAKGV------------------------------- 398

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + T++ ++S    + D+  AFQ+ + + E G+  D   Y++LI    +  ++    
Sbjct: 399 -KPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAH 457

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F  M++ G++P+  TY +LIDG  K G V +A   +  M    V PD V ++ LI   
Sbjct: 458 VLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGL 517

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---------------GQVDR 252
            +S     A  +L ++  E  PV P +I   ALM+ C NA               G ++ 
Sbjct: 518 SKSARTKEAQRLLFKLYHE-EPV-PANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNE 575

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A +VY+ I   N      VY++ I+   + G+   A S +  M + G  P+     +LI 
Sbjct: 576 ADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIR 635

Query: 313 FAGHAGKVEAAFEILQEAKN 332
                G V  A +++Q+  N
Sbjct: 636 GLFEKGMVVEADQVIQQLLN 655


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 201/412 (48%), Gaps = 15/412 (3%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RISE + L++ M   G     +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTY 224

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            ++++      D++ AF +L  +++  L+    +Y T+I    K   +D    +F EM  
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            GI PNV TY +LI      G+ + A      M  + + PD   F+ALI A  + G +  
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEV--Y 272
           A  +  EM      +DP  +T  +L+       ++D A+++++ M+ K+     P+V  Y
Sbjct: 345 AEKLYDEMVK--RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF---PDVVTY 399

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I    +    E    V+ +M+++G++ + V  + LI     AG  + A EI +E  +
Sbjct: 400 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            G+   I++Y++L+ G C N K  +KA+ ++E+++  K++PT+ T N +I  +C   ++ 
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
              ++  ++   G+ P+ + Y+ ++    RK   E    L  + KEDG +PN
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 173/377 (45%), Gaps = 4/377 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+++L++          A  VL  + + G + +    ++L+     S ++     +  +M
Sbjct: 118 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G +PN  T+  LI G     + ++A      M +K  +PD V +  ++    + G  
Sbjct: 178 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 237

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D AF++L +M  E   ++P  +    ++        +D A  ++K +    I+     Y+
Sbjct: 238 DLAFNLLNKM--EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYS 295

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+C    G W  A  +  DM ++ + PD    SALID     GK+  A ++  E   +
Sbjct: 296 SLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 355

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            I   I++YSSL+          +A +++E M S    P V T N LI   C   ++ + 
Sbjct: 356 SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEG 415

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
           MEV  +M   GL  NT+TY+IL+    +  D ++   +  +   DGV PN++ +  ++ G
Sbjct: 416 MEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 475

Query: 453 MCSR-RYEKARTLNEHV 468
           +C   + EKA  + E++
Sbjct: 476 LCKNGKLEKAMVVFEYL 492



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 9/388 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G      +LL  ME+  L     +Y+     +CK  K + +A   FK +     
Sbjct: 229 NGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK-YKHMDDALNLFKEMETKGI 287

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T++ L+S   +      A ++L  + E  +  D   ++ LI    K GK+    +
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 347

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ EMV   I+P++ TY +LI+G     ++ +A   +  M SK+  PD V +N LI    
Sbjct: 348 LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFC 407

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   V+   +V  EM+     +  + +T   L++    AG  D A+E++K +    +   
Sbjct: 408 KYKRVEEGMEVFREMSQ--RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 465

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++   + G  E A  V++ + +  + P     + +I+    AGKVE  +++  
Sbjct: 466 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 525

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 387
               +G+   +++Y++++       + ++A  L++ MK     P     N LI A L DG
Sbjct: 526 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 585

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           D+   + E++ +M+S G   +  T  ++
Sbjct: 586 DR-EASAELIKEMRSCGFAGDASTIGLV 612



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 5/259 (1%)

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A  +  EM  +  P  P  I    L+ A A   + D    + + +    I      Y
Sbjct: 62  LDDAVALFGEM-VKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTY 119

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +I INC  +      A +V   M K G  P+ V LS+L++   H+ ++  A  ++ +   
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G     +++++L+          +A+ L + M +   +P + T   ++  LC       
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
              +L+ M+   L P  + Y+ ++    +   ++  L L  + +  G+ PN+V +  +I 
Sbjct: 240 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299

Query: 453 -MCS--RRYEKARTLNEHV 468
            +C+  R  + +R L++ +
Sbjct: 300 CLCNYGRWSDASRLLSDMI 318



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 102/238 (42%), Gaps = 14/238 (5%)

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A +++ +M K    P  +  S L+       K +    + ++ +N GI     +YS L+ 
Sbjct: 65  AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 124

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                     AL +   M  +  +P + T+++L+   C   ++ + + ++  M   G  P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 456
           NT+T++ L+      +     + L+ +    G  P+LV +  ++ G+C R          
Sbjct: 185 NTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLL 244

Query: 457 -RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
            + E+ + L   VL +N+    + + K    AL +++E    G  P V   S ++ CL
Sbjct: 245 NKMEQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 163/330 (49%), Gaps = 7/330 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIM 188
           ++ LI+   KSG  D   +VF  M  +G++PN+ TY A+ID C K G +  +    +  M
Sbjct: 225 FSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEM 284

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               V+PDR+ +N+L+  C + G  + A ++  EM      +D D  T   L+ A    G
Sbjct: 285 LRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMID--RGIDQDVFTYNTLLDAVCKGG 342

Query: 249 QVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           Q+D A E+  M+     K  P V  Y+   +  ++ G  E A ++Y++M   G+  D V 
Sbjct: 343 QMDLAYEI--MLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            + L+      G+ E A ++ +E  + G+   +++Y++L+        + +   +++ MK
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
             ++ P + T + LI     G    + MEV  + K  GL  + + YS L+ A  +   V+
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVD 520

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             ++LL +  ++G+ PN+V +  II    R
Sbjct: 521 SAVLLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 162/337 (48%), Gaps = 3/337 (0%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEV 149
           T+  F+ L+S    S   + A +V   ++ +GLK +   Y  +I  C K G +   + E+
Sbjct: 221 TVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEI 280

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM+  G++P+  TY +L+  C++ G    A   +  M  + +  D   +N L+ A  +
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D A++++ EM  +   + P+ +T   +    A AG+++ A  +Y  +    I    
Sbjct: 341 GGQMDLAYEIMLEMPGK--KILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDR 398

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   ++  ++ G +E A  V  +M   GV  D V  +AL+D  G  GK      + +E
Sbjct: 399 VSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKE 458

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K   +   +++YS+L+   S    +++A+E++   K   LK  V   + LI ALC    
Sbjct: 459 MKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGL 518

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +   + +L +M   G+ PN +TY+ ++ A  R    E
Sbjct: 519 VDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 190/435 (43%), Gaps = 31/435 (7%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           LV+E       KL + +I+T  + GKV+    VF   ++ G    V  + ALI    K+G
Sbjct: 177 LVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSG 236

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-VDRAFDVLAEMNAEVHPVDPDHI 235
              +A   +  M+   +KP+ V +NA+I ACG+ G    R  ++  EM    + V PD I
Sbjct: 237 YFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLR--NGVQPDRI 294

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T  +L+  C+  G  + AR ++  +    I      Y   ++   + G  + A  +  +M
Sbjct: 295 TYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             K ++P+ V  S + D    AG++E A  +  E K  GI +  +SY++L+   +    +
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRF 414

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           + AL++ + M S  +K  V T NAL+       +  +   V  +MK   + PN +TYS L
Sbjct: 415 EDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTL 474

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSG 474
           +    +    E  + +  + K+ G+  ++V++  +I  +C                    
Sbjct: 475 IDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALC-------------------- 514

Query: 475 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 534
               +N     A+++  E    G  P V   + ++        A   E LV+ +G S + 
Sbjct: 515 ----KNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTA---EFLVDGVGASNER 567

Query: 535 LKRSNLCSLIDGFGE 549
              S    LI+G  E
Sbjct: 568 QSESPTFMLIEGVDE 582



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 183/439 (41%), Gaps = 48/439 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN---PTL 92
           + G   E I + E M+  GL      Y+A      K     K     F+ ++ N   P  
Sbjct: 234 KSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDR 293

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+N L++VC+     E A  +   + + G+  D   Y TL+    K G++D  +E+  E
Sbjct: 294 ITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLE 353

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M    I PNV TY  + DG AKAG++  A   Y  M+   +  DRV +N L++   + G 
Sbjct: 354 MPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGR 413

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
            + A  V  EM +    V  D +T  AL+      G+ +    V+K + K  +      Y
Sbjct: 414 FEDALKVCKEMGSS--GVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTY 471

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +  I+  S+   +E A  V+ +  + G+  D V  S LI+     G V++A  +L E   
Sbjct: 472 STLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTK 531

Query: 333 QGISVGIISYSSLMGA---------------CSNAK------------------NWQKA- 358
           +GI   +++Y+S++ A                SN +                  NW    
Sbjct: 532 EGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPTFMLIEGVDESEINWDDGH 591

Query: 359 -LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
             + Y+ + S K  P               +++   + V   M  L + PN +T+S +L 
Sbjct: 592 VFKFYQQLVSEKEGPAKKER-------LGKEEIRSILSVFKKMHELEIKPNVVTFSAILN 644

Query: 418 ACERKDDVEVGLMLLSQAK 436
           AC R   +E   MLL + +
Sbjct: 645 ACSRCKSIEDASMLLEELR 663



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 148/354 (41%), Gaps = 47/354 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+    + GR  + + + ++M   G+   D V +    +    Q    E  R FK 
Sbjct: 400 SYNTLLSIYAKLGRFEDALKVCKEMGSSGV-KKDVVTYNALLDGYGKQGKFNEVTRVFKE 458

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P L T++ L+ V +     E A +V R  ++AGLKAD  LY+ LI    K+G 
Sbjct: 459 MKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGL 518

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD+   +  EM   GI PNV TY ++ID   ++      F   G+  S   + +   F  
Sbjct: 519 VDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRS--TTAEFLVDGVGASNERQSESPTF-M 575

Query: 203 LITACGQS------GAVDRAFDVLA---------------------EMNAEVHPVD--PD 233
           LI    +S      G V + +  L                       +  ++H ++  P+
Sbjct: 576 LIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPN 635

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSV 291
            +T  A++ AC+    ++ A  + + +  ++     +VY +A        +  W  A  +
Sbjct: 636 VVTFSAILNACSRCKSIEDASMLLEELRLFD----NQVYGVAHGLLMGFSENVWIQAQYL 691

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           +D++ +        F +AL D   H G+   A  ++ E K + +   + S S L
Sbjct: 692 FDEVKQMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRKVWETLWSDSCL 745


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 174/345 (50%), Gaps = 2/345 (0%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           ++  A  +L+ V    ++ +  +Y T+I +  K   V+  F++F EM++ GI P+V TY 
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYS 264

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           ALI G    G++  A   +  M  +N+KPD   FN L+ A  + G +     V   M  +
Sbjct: 265 ALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ 324

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              + P+ +T  +LM       +V++A+ ++  + +  +    + Y+I IN   +   ++
Sbjct: 325 --GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFD 382

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A +++ +M +K +IPD V  S+LID    +G++  A +++ +  ++G+   I +Y+S++
Sbjct: 383 EAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSIL 442

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A        KA+ L   +K   ++P + T + LI  LC   +L    +V   +   G  
Sbjct: 443 DALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHN 502

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            N  TY+I++     +      L LLS+ +++G IP+   ++ II
Sbjct: 503 LNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIII 547



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 220/457 (48%), Gaps = 25/457 (5%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           H+N  +DV + +  +NRL+R+       +  + +   G L   K YH   +    SQK  
Sbjct: 61  HSN--NDVDDAVSLFNRLLRRNTTPPAFEFNKIL---GSLVKSKHYHTVLY---LSQKM- 111

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              FR  K    P L   N+L++          AF V   + + G   D   +TTLI   
Sbjct: 112 --EFRGIK----PNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGL 165

Query: 138 AKSGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
              G++   F +FH+ V A G   +  +YG LI G  K G+   A      +    V+P+
Sbjct: 166 CLKGQIQQAF-LFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPN 224

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V++N +I +  +   V+ AFD+ +EM ++   + PD +T  AL+      G+++ A ++
Sbjct: 225 VVMYNTIIDSMCKVKLVNEAFDLFSEMISK--GISPDVVTYSALISGFCILGKLNDAIDL 282

Query: 257 YKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           +  +   NIK  P+VYT  I +N   + G  +   +V+D M K+G+ P+ V  ++L+D  
Sbjct: 283 FNKMILENIK--PDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY 340

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               +V  A  I       G++  I SYS ++      K + +A+ L++ M    + P V
Sbjct: 341 CLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDV 400

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T ++LI  L    ++   ++++  M   G+ P   TY+ +L A  +   V+  + LL++
Sbjct: 401 VTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTK 460

Query: 435 AKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 469
            K+ G+ PN+  +  +I G+C S + E AR + E +L
Sbjct: 461 LKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLL 497



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 169/354 (47%), Gaps = 4/354 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +N ++      K    AF +   +   G+  D   Y+ LI+     GK++   ++
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDL 282

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F++M+   I+P+V+T+  L++   K G++ +    + +M  + +KP+ V +N+L+     
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCL 342

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              V++A  +   M      V+PD  +   ++       + D A  ++K +H+ NI    
Sbjct: 343 VKEVNKAKSIFNTMAQG--GVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDV 400

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  I+  S++G   +A  + D M  +GV P     ++++D      +V+ A  +L +
Sbjct: 401 VTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTK 460

Query: 330 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            K++GI   + +YS L+ G C + K  + A +++E +        V T   +I   C   
Sbjct: 461 LKDKGIQPNMYTYSILIKGLCQSGK-LEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEG 519

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
              + + +LS M+  G  P+  TY I++++  +KD+ ++   LL +    GV P
Sbjct: 520 LFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 163/330 (49%), Gaps = 7/330 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIM 188
           ++ LI+   KSG  D   +VF  M  +G++PN+ TY A+ID C K G +  +    +  M
Sbjct: 225 FSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEM 284

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               V+PDR+ +N+L+  C + G  + A ++  EM      +D D  T   L+ A    G
Sbjct: 285 LRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMID--RGIDQDVFTYNTLLDAVCKGG 342

Query: 249 QVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           Q+D A E+  M+     K  P V  Y+   +  ++ G  E A ++Y++M   G+  D V 
Sbjct: 343 QMDLAYEI--MLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVS 400

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            + L+      G+ E A ++ +E  + G+   +++Y++L+        + +   +++ MK
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
             ++ P + T + LI     G    + MEV  + K  GL  + + YS L+ A  +   V+
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVD 520

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             ++LL +  ++G+ PN+V +  II    R
Sbjct: 521 SAVLLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 162/337 (48%), Gaps = 3/337 (0%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEV 149
           T+  F+ L+S    S   + A +V   ++ +GLK +   Y  +I  C K G +   + E+
Sbjct: 221 TVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEI 280

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM+  G++P+  TY +L+  C++ G    A   +  M  + +  D   +N L+ A  +
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCK 340

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D A++++ EM  +   + P+ +T   +    A AG+++ A  +Y  +    I    
Sbjct: 341 GGQMDLAYEIMLEMPGK--KILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDR 398

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   ++  ++ G +E A  V  +M   GV  D V  +AL+D  G  GK      + +E
Sbjct: 399 VSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKE 458

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K   +   +++YS+L+   S    +++A+E++   K   LK  V   + LI ALC    
Sbjct: 459 MKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGL 518

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +   + +L +M   G+ PN +TY+ ++ A  R    E
Sbjct: 519 VDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAE 555



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 160/336 (47%), Gaps = 3/336 (0%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           LV+E       KL + +I+T  + GKV+    VF   ++ G    V  + ALI    K+G
Sbjct: 177 LVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSG 236

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-VDRAFDVLAEMNAEVHPVDPDHI 235
              +A   +  M+   +KP+ V +NA+I ACG+ G    R  ++  EM    + V PD I
Sbjct: 237 YFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLR--NGVQPDRI 294

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T  +L+  C+  G  + AR ++  +    I      Y   ++   + G  + A  +  +M
Sbjct: 295 TYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             K ++P+ V  S + D    AG++E A  +  E K  GI +  +SY++L+   +    +
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRF 414

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           + AL++ + M S  +K  V T NAL+       +  +   V  +MK   + PN +TYS L
Sbjct: 415 EDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTL 474

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +    +    E  + +  + K+ G+  ++V++  +I
Sbjct: 475 IDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELI 510



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 183/439 (41%), Gaps = 48/439 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN---PTL 92
           + G   E I + E M+  GL      Y+A      K     K     F+ ++ N   P  
Sbjct: 234 KSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDR 293

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+N L++VC+     E A  +   + + G+  D   Y TL+    K G++D  +E+  E
Sbjct: 294 ITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLE 353

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M    I PNV TY  + DG AKAG++  A   Y  M+   +  DRV +N L++   + G 
Sbjct: 354 MPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGR 413

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
            + A  V  EM +    V  D +T  AL+      G+ +    V+K + K  +      Y
Sbjct: 414 FEDALKVCKEMGSS--GVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTY 471

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +  I+  S+   +E A  V+ +  + G+  D V  S LI+     G V++A  +L E   
Sbjct: 472 STLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTK 531

Query: 333 QGISVGIISYSSLMGA---------------CSNAK------------------NWQKA- 358
           +GI   +++Y+S++ A                SN +                  NW    
Sbjct: 532 EGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPSFMLIEGVDESEINWDDGH 591

Query: 359 -LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
             + Y+ + S K  P               +++   + V   M  L + PN +T+S +L 
Sbjct: 592 VFKFYQQLVSEKEGPAKKER-------LGKEEIRSILSVFKKMHELEIKPNVVTFSAILN 644

Query: 418 ACERKDDVEVGLMLLSQAK 436
           AC R   +E   MLL + +
Sbjct: 645 ACSRCKSIEDASMLLEELR 663



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 148/354 (41%), Gaps = 47/354 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+    + GR  + + + ++M   G+   D V +    +    Q    E  R FK 
Sbjct: 400 SYNTLLSIYAKLGRFEDALKVCKEMGSSGV-KKDVVTYNALLDGYGKQGKFNEVTRVFKE 458

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P L T++ L+ V +     E A +V R  ++AGLKAD  LY+ LI    K+G 
Sbjct: 459 MKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGL 518

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD+   +  EM   GI PNV TY ++ID   ++      F   G+  S   + +   F  
Sbjct: 519 VDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRS--TTAEFLVDGVGASNERQSESPSF-M 575

Query: 203 LITACGQS------GAVDRAFDVLA---------------------EMNAEVHPVD--PD 233
           LI    +S      G V + +  L                       +  ++H ++  P+
Sbjct: 576 LIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPN 635

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSV 291
            +T  A++ AC+    ++ A  + + +  ++     +VY +A        +  W  A  +
Sbjct: 636 VVTFSAILNACSRCKSIEDASMLLEELRLFD----NQVYGVAHGLLMGFSENVWIQAQYL 691

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           +D++ +        F +AL D   H G+   A  ++ E K + +   + S S L
Sbjct: 692 FDEVKQMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRKVWETLWSDSCL 745


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 207/443 (46%), Gaps = 16/443 (3%)

Query: 31  SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
           SY+RL     I + + ++   +  G +     Y+A      +S++ I  A   FK +   
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199

Query: 88  -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             +P + T+N+L+     + + + A  +   ++  G   +   Y TLI    K  K+D  
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           F++   M   G+EPN+ +Y  +I+G  + G++ +       M  +    D V +N LI  
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G   +A  + AEM    H + P  IT  +L+ +   AG ++RA E    +    + 
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAF 324
                YT  ++  SQ G    A  V  +M   G  P  V  +ALI+  GH   GK+E A 
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +L++ K +G+S  ++SYS+++     + +  +AL +   M    +KP   T ++LI   
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C+  +  +  ++  +M  +GL P+  TY+ L+ A   + D+E  L L ++  E GV+P++
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555

Query: 445 VMFKCIIGMC---SRRYEKARTL 464
           V +  +I      SR  E  R L
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLL 578



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/438 (26%), Positives = 194/438 (44%), Gaps = 44/438 (10%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  + +YN LIR     G I   + L + ME KG L                       
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCL----------------------- 237

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P + T+N L+      +  +  F++LR +   GL+ +   Y  +I    + 
Sbjct: 238 ---------PNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCRE 288

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G++  +  V  EM   G   +  TY  LI G  K G   +A   +  M    + P  + +
Sbjct: 289 GRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITY 348

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
            +LI +  ++G ++RA + L +M   V  + P+  T   L+   +  G ++   E Y+++
Sbjct: 349 TSLIHSMCKAGNMNRAMEFLDQM--RVRGLCPNERTYTTLVDGFSQKGYMN---EAYRVL 403

Query: 261 HKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            + N  G +P V  Y   IN    TG  E A +V +DM +KG+ PD V  S ++     +
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
             V+ A  + +E   +GI    I+YSSL+      +  ++A +LYE M  + L P   T 
Sbjct: 464 YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTY 523

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
            ALI A C    L K +++ ++M   G+ P+ +TYS+L+    ++        LL +   
Sbjct: 524 TALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFY 583

Query: 438 DGVIPNLVMFKCIIGMCS 455
           +  +P+ V +  +I  CS
Sbjct: 584 EESVPSDVTYHTLIENCS 601



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 185/412 (44%), Gaps = 22/412 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKS---QKAIKEAFRFFKLVP 88
           N L R+GR+ E   +L +M R+G   +D+V Y+      CK     +A+       +   
Sbjct: 283 NGLCREGRMKEVSFVLTEMNRRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL 341

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P++ T+  L+     + +   A + L  ++  GL  + + YTTL+   ++ G ++  + 
Sbjct: 342 TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  EM + G  P+V TY ALI+G    G++  A      M+ K + PD V ++ +++   
Sbjct: 402 VLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC 461

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +S  VD A  V  EM  +   + PD IT  +L++      +   A ++Y+ + +  +   
Sbjct: 462 RSYDVDEALRVKREMVEK--GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  IN     GD E A  ++++M +KGV+PD V  S LI+      +   A  +L 
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579

Query: 329 EAKNQGISVGIISYSSLMGACSNAK---------------NWQKALELYEHMKSIKLKPT 373
           +   +      ++Y +L+  CSN +                  +A +++E M     KP 
Sbjct: 580 KLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPD 639

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
            +  N +I   C    + K   +  +M   G   +T+T   L+ A  ++  V
Sbjct: 640 GTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKV 691



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 194/468 (41%), Gaps = 62/468 (13%)

Query: 101 VCASSKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           V A + D E A  V + +QE      +   ++  ++ + ++   +D    + H     G 
Sbjct: 106 VAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGF 165

Query: 159 EPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
            P V +Y A++D   ++ + ++ A   +  M    V P+   +N LI     +G +D A 
Sbjct: 166 MPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVAL 225

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTI 274
            +  +M  E     P+ +T   L+       ++D     +K++    +KG  P +  Y +
Sbjct: 226 TLFDKM--ETKGCLPNVVTYNTLIDGYCKLRKIDDG---FKLLRSMALKGLEPNLISYNV 280

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            IN   + G  +    V  +M ++G   DEV  + LI      G    A  +  E    G
Sbjct: 281 VINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG 340

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL------------------------ 370
           ++  +I+Y+SL+ +   A N  +A+E  + M+   L                        
Sbjct: 341 LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAY 400

Query: 371 -----------KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
                       P+V T NALI   C   ++   + VL DMK  GL P+ ++YS +L   
Sbjct: 401 RVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGF 460

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQ 477
            R  DV+  L +  +  E G+ P+ + +  +I G C  RR ++A  L E +L    G P 
Sbjct: 461 CRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV--GLPP 518

Query: 478 IENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQ 513
            E  +T+L            AL ++ E +  G +P V   S ++  L 
Sbjct: 519 DEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLN 566



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 139/332 (41%), Gaps = 25/332 (7%)

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM--TKKGVIPDEVFLSALIDFAGH 316
           ++ K+ +  T ++  +A +  ++T D E+A  V+  +  T             ++     
Sbjct: 89  ILTKFKLYKTAQI--LAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSR 146

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVS 375
              ++ A  I+  A+  G   G++SY++++ A   +K N   A  +++ M   ++ P V 
Sbjct: 147 LSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVF 206

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N LI   C    +   + +   M++ G  PN +TY+ L+    +   ++ G  LL   
Sbjct: 207 TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266

Query: 436 KEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTSL------- 485
              G+ PNL+ +  +I G+C   R  E +  L E       G    E  + +L       
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN---RRGYSLDEVTYNTLIKGYCKE 323

Query: 486 -----ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 540
                AL+++ E +  G  P+V   + ++  +    N +     ++ + V          
Sbjct: 324 GNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383

Query: 541 CSLIDGFGE--YDPRAFSLLEEAASFGIVPCV 570
            +L+DGF +  Y   A+ +L E    G  P V
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSV 415



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 127/336 (37%), Gaps = 67/336 (19%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G++ + I +LEDM+ KGL      Y       C+S   + EA R  + 
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD-VDEALRVKRE 475

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T++ L+      + ++ A  +   +   GL  D   YT LI      G 
Sbjct: 476 MVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGD 535

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA--------------------------- 175
           ++   ++ +EMV  G+ P+V TY  LI+G  K                            
Sbjct: 536 LEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHT 595

Query: 176 -----------------------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
                                  G + +A   +  M  KN KPD   +N +I    ++G 
Sbjct: 596 LIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGD 655

Query: 213 VDRAFDVLAEMNAE---VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           + +A+ +  EM      +H V     T+ AL+KA    G+V+    V   + +       
Sbjct: 656 IRKAYTLYKEMVKSGFLLHTV-----TVIALVKALHKEGKVNELNSVIVHVLRSCELSEA 710

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           E   + +    + G+ +    V  +M K G +P+ +
Sbjct: 711 EQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPNGI 746


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 129/483 (26%), Positives = 210/483 (43%), Gaps = 48/483 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN LI    +  ++     LL++M+  GL      Y       C+ Q  +  A++ F+ 
Sbjct: 44  TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR-QTKVDTAYKLFRQ 102

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +V N   P L T+N L+S    +   + A+++L  ++E GL+ D   Y TL+    K+GK
Sbjct: 103 MVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 162

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D   +VF +  N    P+V  Y  LI G  K G++ +A   +  MR  + +PD V F A
Sbjct: 163 IDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTA 222

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L+    +   +  A  VL  M  E     P+ IT  +L+      GQV  A+EV+K +  
Sbjct: 223 LMDGLCKGDRLQEAQQVLETM--EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIV 280

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I+     Y   I+    T   + A  + ++MT  G +PD +  + LID     G+   
Sbjct: 281 RGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPE 340

Query: 323 AFEILQEAKNQGISVGIISYSSLMGA-CS------------------------------- 350
           A  +  + K +  +  +I+YS L+G  C                                
Sbjct: 341 ANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVE 400

Query: 351 ---NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
              NA     A  L E M +    P V T  +L+   C   ++ +   VL  M   G  P
Sbjct: 401 GYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQP 460

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLN 465
           N +TY+ L+ A  R     V   LL +   +GV PN++ ++ +I G C +   E+AR + 
Sbjct: 461 NVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKML 520

Query: 466 EHV 468
           E +
Sbjct: 521 ERL 523



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 188/392 (47%), Gaps = 10/392 (2%)

Query: 70  VCKSQKAIKEAFRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +CK+ +  +    F K+     VPN    T+N+L++          A+ +L+ ++E+GL 
Sbjct: 17  LCKANRLPEATTYFAKMKKKGTVPNEW--TYNVLINGFCKVHKVHRAYLLLKEMKESGLA 74

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
            +   Y+T+I    +  KVD  +++F +MV  G  PN+ TY  L+ G  + G + +A+  
Sbjct: 75  PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 134

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
              MR + ++PD+  ++ L+    ++G +D A  V  + +    P  PD +    L+   
Sbjct: 135 LDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCP--PDVVAYSTLIAGL 192

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
              G++D A ++++ + + + +     +T  ++   +    + A  V + M  +   P+ 
Sbjct: 193 CKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNV 252

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           +  S+LID     G+V  A E+ +    +GI   +++Y+SL+           AL L E 
Sbjct: 253 ITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEE 312

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M +    P + T N LI  LC   + P+   +  DMK+    P+ ITYS L+    + + 
Sbjct: 313 MTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLER 372

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
           +++   L     +  V+P++V F  ++ G C+
Sbjct: 373 IDMARTLFDDMLKQAVLPDVVTFSTLVEGYCN 404



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 126/473 (26%), Positives = 216/473 (45%), Gaps = 24/473 (5%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L +YN L+    R G + E  +LL++M  +GL      Y      +CK+ K I  A + 
Sbjct: 111 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK-IDMALKV 169

Query: 84  FKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           F+   N    P +  ++ L++ +C + +  E A ++   ++E   + D   +T L+    
Sbjct: 170 FEDNSNGDCPPDVVAYSTLIAGLCKTGRLDE-ACKLFEKMRENSCEPDVVTFTALMDGLC 228

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K  ++    +V   M +    PNV TY +LIDG  K GQV  A   +  M  + ++P+ V
Sbjct: 229 KGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVV 288

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY- 257
            +N+LI     +  VD A  ++ EM A      PD IT   L+      G+   A  ++ 
Sbjct: 289 TYNSLIHGFCMTNGVDSALLLMEEMTA--TGCLPDIITYNTLIDGLCKTGRAPEANRLFG 346

Query: 258 KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
            M  K+     P+V  Y+  I    +    + A +++DDM K+ V+PD V  S L++   
Sbjct: 347 DMKAKF---CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYC 403

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
           +AG V+ A  +L+E      S  + +Y+SL+          +A  + + M     +P V 
Sbjct: 404 NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVV 463

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQ 434
           T  ALI A C   +     ++L +M   G+ PN ITY  L+   C   D  E   ML   
Sbjct: 464 TYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERL 523

Query: 435 AKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
            +++    ++  ++ ++ G+C + R   A  L E +    SG P   + + +L
Sbjct: 524 ERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQ--SGTPPRHDIYVAL 574



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 187/428 (43%), Gaps = 53/428 (12%)

Query: 20  NYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQ 74
           N   D    + +Y+ LI    + GR+ E   L E M R+   + D V + A    +CK  
Sbjct: 173 NSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKM-RENSCEPDVVTFTALMDGLCKGD 231

Query: 75  KAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           + ++EA +  + + +    P + T++ L+     +     A +V + +   G++ +   Y
Sbjct: 232 R-LQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTY 290

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            +LI     +  VD+   +  EM   G  P++ TY  LIDG  K G+  +A   +G M++
Sbjct: 291 NSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKA 350

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           K   PD + ++ LI    +   +D A  +  +M  +   V PD +T   L++   NAG V
Sbjct: 351 KFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA--VLPDVVTFSTLVEGYCNAGLV 408

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           D A  + + +   +   +P+VYT    ++   + G    A  V   M K+G  P+ V  +
Sbjct: 409 DDAERLLEEMVASDC--SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYT 466

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA---------- 358
           ALID    AGK   A+++L+E    G+   +I+Y SL+G      + ++A          
Sbjct: 467 ALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERD 526

Query: 359 --------------------------LELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
                                     LEL E +K     P      ALI  LC G +L K
Sbjct: 527 ENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGK 586

Query: 393 TMEVLSDM 400
            MEVL +M
Sbjct: 587 AMEVLEEM 594



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 191/432 (44%), Gaps = 18/432 (4%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +T +I    K+ ++      F +M   G  PN  TY  LI+G  K  +V +A+     M+
Sbjct: 10  WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK 69

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
              + P+ V ++ +I    +   VD A+ +  +M    +   P+ +T   L+      G 
Sbjct: 70  ESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE--NGCMPNLVTYNTLLSGLCRNGL 127

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D A E+   + +  ++     Y   +    +TG  + A  V++D +     PD V  S 
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 187

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI      G+++ A ++ ++ +       ++++++LM         Q+A ++ E M+   
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 247

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P V T ++LI  LC   Q+    EV   M   G+ PN +TY+ L+      + V+  L
Sbjct: 248 CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSAL 307

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMC--SRRYE--------KARTLNEHVLSFN---SGR 475
           +L+ +    G +P+++ +  +I G+C   R  E        KA+  N  V++++    G 
Sbjct: 308 LLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGF 367

Query: 476 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 535
            ++E     +A  ++ + +    +P V   S ++         D  ERL+E +  S  + 
Sbjct: 368 CKLER--IDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSP 425

Query: 536 KRSNLCSLIDGF 547
                 SL+DGF
Sbjct: 426 DVYTYTSLVDGF 437



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 132/327 (40%), Gaps = 53/327 (16%)

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            +TI I+   +      A + +  M KKG +P+E   + LI+      KV  A+ +L+E 
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 331 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
           K  G++  +++YS+++ G C   K    A +L+  M      P + T N L++ LC    
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTK-VDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 127

Query: 390 LPKTMEVLSDMKS--------------LGLC---------------------PNTITYSI 414
           + +  E+L +M+                GLC                     P+ + YS 
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 187

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFN 472
           L+    +   ++    L  + +E+   P++V F  ++ G+C   R ++A+ + E +   N
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRN 247

Query: 473 SGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADI 520
                I   ++SL            A  V++  IV G  P V   + ++    +    D 
Sbjct: 248 CTPNVI--TYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 305

Query: 521 RERLVENLGVSADALKRSNLCSLIDGF 547
              L+E +  +          +LIDG 
Sbjct: 306 ALLLMEEMTATGCLPDIITYNTLIDGL 332



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           +I+++ ++     A    +A   +  MK     P   T N LI   C   ++ +   +L 
Sbjct: 7   VITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLK 66

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +MK  GL PN +TYS ++    R+  V+    L  Q  E+G +PNLV +  ++ G+C
Sbjct: 67  EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
           ++ +  V T   +I  LC  ++LP+     + MK  G  PN  TY++L+    +   V  
Sbjct: 1   MECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHR 60

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
             +LL + KE G+ PN+V +  +I G C +
Sbjct: 61  AYLLLKEMKESGLAPNVVTYSTVIHGFCRQ 90


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 205/427 (48%), Gaps = 9/427 (2%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RIS+ + L++ M   G     +    + H  F +  K+ +A+    R  +    P L T+
Sbjct: 95  RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 153

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            ++++      D + AF +L  ++ A ++AD  ++ T+I +  K   VD    +F EM  
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            GI PNV TY +LI      G+ + A      M  K + P+ V FNALI A  + G    
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  +  +M      +DPD  T  +L+       ++D+A+++++ +   +     + Y   
Sbjct: 274 AEKLHDDMIKR--SIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I    ++   E    ++ +M+ +G++ D V  + LI    H G  + A ++ ++  + G+
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391

Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
              I++YS L+ G C+N K  +KALE++++M+  ++K  +     +I  +C   ++    
Sbjct: 392 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           ++   +   G+ PN +TY+ ++     K  ++    LL + KEDG +P+   +  +I   
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510

Query: 455 SRRYEKA 461
            R  +KA
Sbjct: 511 LRDGDKA 517



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 187/442 (42%), Gaps = 46/442 (10%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF-- 81
           +  +N+L+    +  +    I L E M+R G+      Y+      C+ SQ ++  A   
Sbjct: 10  IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLG 69

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +  KL   P++ T + L++     K    A  ++  + E G + D   +TTLI       
Sbjct: 70  KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 129

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K      +   MV  G +PN+ TYG +++G  K G +  AF     M +  ++ D V+FN
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFN 189

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I +  +   VD A ++  EM  E   + P+ +T                         
Sbjct: 190 TIIDSLCKYRHVDDALNLFKEM--ETKGIRPNVVT------------------------- 222

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                     Y+  I+C    G W  A  +  DM +K + P+ V  +ALID     GK  
Sbjct: 223 ----------YSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFV 272

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A ++  +   + I   I +Y+SL+          KA +++E M S    P + T N LI
Sbjct: 273 EAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLI 332

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
              C   ++    E+  +M   GL  +T+TY+ L+       D +    +  Q   DGV 
Sbjct: 333 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP 392

Query: 442 PNLVMFKCII-GMCSR-RYEKA 461
           P+++ +  ++ G+C+  + EKA
Sbjct: 393 PDIMTYSILLDGLCNNGKLEKA 414



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 174/375 (46%), Gaps = 9/375 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I    +LL  ME   +     +++    ++CK  + + +A   FK +     
Sbjct: 158 NGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK-YRHVDDALNLFKEMETKGI 216

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T++ L+S   S      A Q+L  + E  +  +   +  LI    K GK     +
Sbjct: 217 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 276

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M+   I+P++ TY +LI+G     ++ KA   +  M SK+  PD   +N LI    
Sbjct: 277 LHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFC 336

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +S  V+   ++  EM+     +  D +T   L++   + G  D A++V+K +    +   
Sbjct: 337 KSKRVEDGTELFREMSHR--GLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 394

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+I ++     G  E A  V+D M K  +  D    + +I+    AGKV+  +++  
Sbjct: 395 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 454

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 387
               +G+   +++Y++++    + +  Q+A  L + MK     P   T N LI A L DG
Sbjct: 455 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 514

Query: 388 DQLPKTMEVLSDMKS 402
           D+   + E++ +M+S
Sbjct: 515 DK-AASAELIREMRS 528



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 160/377 (42%), Gaps = 21/377 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           + L +   + + ++L ++ME KG+      Y +    +C   +    +     ++    N
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSGKVDA 145
           P L TFN L+         EG F     + +  +K     D   Y +LI       ++D 
Sbjct: 253 PNLVTFNALIDAFVK----EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK 308

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++F  MV+    P++ TY  LI G  K+ +V      +  M  + +  D V +  LI 
Sbjct: 309 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ 368

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
                G  D A  V  +M ++  P  PD +T   L+    N G++++A EV+  + K  I
Sbjct: 369 GLFHDGDCDNAQKVFKQMVSDGVP--PDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426

Query: 266 KGTPEVYTIAINCCSQTGD----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K    +YT  I    + G     W+  CS    ++ KGV P+ V  + +I        ++
Sbjct: 427 KLDIYIYTTMIEGMCKAGKVDDGWDLFCS----LSLKGVKPNVVTYNTMISGLCSKRLLQ 482

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A+ +L++ K  G      +Y++L+ A     +   + EL   M+S +     ST+  + 
Sbjct: 483 EAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVA 542

Query: 382 TALCDGDQLPKTMEVLS 398
             L DG      +++LS
Sbjct: 543 NMLHDGRLDKSFLDMLS 559



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 19/232 (8%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLD 58
           D  K M +F          + D    L +YN LI+      R+ +  +L  +M  +GL+ 
Sbjct: 307 DKAKQMFEFMV--------SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVG 358

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQ 113
            D V +               A + FK      VP P + T+++L+    ++   E A +
Sbjct: 359 -DTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP-PDIMTYSILLDGLCNNGKLEKALE 416

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           V   +Q++ +K D  +YTT+I    K+GKVD  +++F  +   G++PNV TY  +I G  
Sbjct: 417 VFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLC 476

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
               + +A+     M+     PD   +N LI A  + G    + +++ EM +
Sbjct: 477 SKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 528



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 108/253 (42%), Gaps = 11/253 (4%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P       L+ A A   + D    + + + +  I      Y I INC  +      A ++
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
              M K G  P  V LS+L++   H  ++  A  ++ +    G     I++++L+     
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
                +A+ L + M     +P + T   ++  LC    +     +L+ M++  +  + + 
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKA-------- 461
           ++ ++ +  +   V+  L L  + +  G+ PN+V +  +I  +CS  R+  A        
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 462 -RTLNEHVLSFNS 473
            + +N ++++FN+
Sbjct: 248 EKKINPNLVTFNA 260



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 14/231 (6%)

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K   +P     + L+       K +    + ++ +  GIS  + +Y+ L+        
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
              AL L   M  +  +P++ T+++L+   C G ++   + ++  M  +G  P+TIT++ 
Sbjct: 61  ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-----------RYEKAR 462
           L+      +     + L+ +  + G  PNLV +  ++ G+C R           + E A+
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 180

Query: 463 TLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
            +   V+ FN+    + + +    AL +++E    G  P V   S ++ CL
Sbjct: 181 -IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 230


>gi|299116347|emb|CBN76149.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 197/438 (44%), Gaps = 37/438 (8%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG-------------- 171
           D   +  +++ C+K+G+  +   V  EM  AG+ P    +  ++                
Sbjct: 492 DHSSFMAVLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGG 551

Query: 172 -CAK--AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-- 226
             AK  A +   A      M  + V+PD V +N+LI      G  DRA ++L  MNA+  
Sbjct: 552 GAAKREAPRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGG 611

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V PD IT  + + ACA+ G+  +A ++   + +  +K     YT AI+ CS+ G+ E
Sbjct: 612 AGGVRPDVITYNSAIAACASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPE 671

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  +   M    V+PD + ++A +D     GK   A  IL E +++G++    +Y + +
Sbjct: 672 EALRLLRAMEASNVVPDVIAMTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAAI 731

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS---- 402
            AC     WQ+ALEL   +++     TV   N  + A   G +  + + +L  MK+    
Sbjct: 732 QACGRGGQWQRALELLSRLENRASGATVQEYNCAMMACVTGGESGRALALLEQMKANKGG 791

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG--VIPNLVMFKCIIGMC--SRRY 458
           +   P+ +TY+  ++AC      +  L LL + +E G    PN+  +   I  C  +R++
Sbjct: 792 VNAGPDMVTYTSAIMACSSTGKWDRALSLLDEMREAGPRTQPNIRSYTAAIAACGRARKW 851

Query: 459 EKARTLNEHVL---------SFNSG-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 508
           E+A  L+  +L         SFN+  R         L++ +    + AG  P    V ++
Sbjct: 852 EEAVALHSKLLEEGMSPDPASFNAVIRAARRGGQHKLSMKLLASMVEAGLTPDGVTVGEL 911

Query: 509 LGCLQLPYNADIRERLVE 526
           +  L      D  +R+VE
Sbjct: 912 ISSLSDRGRWDDAQRVVE 929



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 183/415 (44%), Gaps = 48/415 (11%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--------NPT 91
           R    ++LL DMER+G+ + D V +    NV +       A      +          P 
Sbjct: 560 RWPMALELLADMERRGV-EPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGGVRPD 618

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+N  ++ CAS  +S+ A Q++  ++  GLK D   YT+ I  C+K+G  +    +  
Sbjct: 619 VITYNSAIAACASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLLR 678

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M  + + P+V    A +D  A  G+ ++A      MRSK V P+   + A I ACG+ G
Sbjct: 679 AMEASNVVPDVIAMTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAAIQACGRGG 738

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI--HKYNIKGTP 269
              RA ++L+ +                 M AC   G+  RA  + + +  +K  +   P
Sbjct: 739 QWQRALELLSRLENRASGATVQEYNCA--MMACVTGGESGRALALLEQMKANKGGVNAGP 796

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           ++  YT AI  CS TG W+ A S+ D+M + G                            
Sbjct: 797 DMVTYTSAIMACSSTGKWDRALSLLDEMREAG---------------------------- 828

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
              + Q     I SY++ + AC  A+ W++A+ L+  +    + P  ++ NA+I A   G
Sbjct: 829 --PRTQ---PNIRSYTAAIAACGRARKWEEAVALHSKLLEEGMSPDPASFNAVIRAARRG 883

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            Q   +M++L+ M   GL P+ +T   L+ +   +   +    ++  A++ G IP
Sbjct: 884 GQHKLSMKLLASMVEAGLTPDGVTVGELISSLSDRGRWDDAQRVVEIAEKTGAIP 938



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 175/427 (40%), Gaps = 71/427 (16%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSGKVDAMFEVFH 151
           F + + VC   +  +   +VL L++  GL+AD   Y T++   +   K GK     +   
Sbjct: 270 FELALEVCVLCERPDAGLEVLSLMRSTGLQADLDDYKTVLKGYSANRKQGKALFTVQTMS 329

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            +  AG+  ++    A +D C+KA     A           +KPD  +F   I A   +G
Sbjct: 330 AVQQAGLVADIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILAYSLAG 389

Query: 212 ----AVDRAFDVLAEMNAEVHPVDPDH-----ITIG--------------ALMKACANAG 248
               A D A     +  +      P       +++G              A++KA   AG
Sbjct: 390 KWVEARDLALQWRGQAPSPASSSTPGGDGGGAVSVGLGISRPPPPTVCNTAILKAMGKAG 449

Query: 249 QVDRA----REVYKMI---------------HKYNIKG----TPEVYTIAINCCSQTGDW 285
           +VD A     + Y                   + +++G        +   ++ CS+ G W
Sbjct: 450 KVDEAIAWLGDTYDAATATATAASGAGTTEDEQGSVRGFVCLDHSSFMAVLSACSKAGRW 509

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGH------------AGKVEA-----AFEILQ 328
             A SV  +M + GV P+ V  + ++    H            A K EA     A E+L 
Sbjct: 510 GSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGGGAAKREAPRWPMALELLA 569

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITAL 384
           + + +G+   +++Y+SL+          +ALE+ + M +      ++P V T N+ I A 
Sbjct: 570 DMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGGVRPDVITYNSAIAAC 629

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
             G +  K  +++ +M+  GL P+  +Y+  + AC +  + E  L LL   +   V+P++
Sbjct: 630 ASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLLRAMEASNVVPDV 689

Query: 445 V-MFKCI 450
           + M  C+
Sbjct: 690 IAMTACM 696


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 203/473 (42%), Gaps = 43/473 (9%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  L +++ LI    ++ R+ E   L   M  KG++  D V ++   N       ++E  
Sbjct: 272 SPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVP-DLVIYSILINGLFRAGKLEEGN 330

Query: 82  RFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F +         +  F+ +M       D   A +V   + + G+  +   Y+ LI   
Sbjct: 331 SLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGL 390

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            ++G+V     VF +++  G+EP+V TY +LIDG  K+  +   FG YGIM  K   PD 
Sbjct: 391 CRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDV 450

Query: 198 VVFNALITACGQSGAVDRAFDVLAE------------MNAEV------------------ 227
           VV + LI    + G +D A     +             NA +                  
Sbjct: 451 VVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYIL 510

Query: 228 ---HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
              + V PD +T   L+K  A  G++D A  ++  + K        +Y   I+   +  D
Sbjct: 511 MGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRD 570

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
                 ++  M   G+ PD    + LI+     G VE   E+L+E    G+   I++Y++
Sbjct: 571 PATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNT 630

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           ++    + K + KA++L+E +K  + +P   T   LI A C   ++   M + S M   G
Sbjct: 631 MICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERG 690

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
             PN +TYS L+    + ++ E    L  +   D V PN+V +  +I G+C +
Sbjct: 691 PEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKK 743



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 165/386 (42%), Gaps = 29/386 (7%)

Query: 32  YNRLIRQGRISE---CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           Y  ++R+G + +   C  L+  + R+G++D                    EA RFF    
Sbjct: 438 YGIMLRKGHVPDVVVCSMLINGLSRQGMMD--------------------EALRFFFQAV 477

Query: 89  NPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              L+     FN L+  C   K +    ++  L+    +  D   YT L+   A+ G++D
Sbjct: 478 KRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLD 537

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +F +++  G  P+   Y  LIDG  K    A     + +M+S  + PD  ++N LI
Sbjct: 538 EALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLI 597

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G V+   ++L E+    + ++PD +T   ++    +     +A ++++++    
Sbjct: 598 NMFFREGCVENVLELLREIIK--YGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGR 655

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            +     +TI I+   + G  + A  ++  M ++G  P+ +  S LID        E+AF
Sbjct: 656 TQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAF 715

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+ ++     +S  I+SYS L+         ++A   ++      L P V     LI   
Sbjct: 716 ELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGY 775

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTI 410
           C   +L + M +   M   G+ P+ +
Sbjct: 776 CKVGRLAEAMMLYDHMLVNGIMPDDL 801



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/446 (19%), Positives = 177/446 (39%), Gaps = 40/446 (8%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTL 92
           +R G + + I++   M ++G+      Y      +C++ + ++    F +++     P++
Sbjct: 356 VRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSV 415

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T++ L+     S++    F +  ++   G   D  + + LI   ++ G +D     F +
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQ 475

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            V  G+  N + + ALIDGC +  +       Y +M    V PD V +  L+    + G 
Sbjct: 476 AVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGR 535

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A  +  ++  +     PDHI    L+             +++K++    I     +Y
Sbjct: 536 LDEALALFFQLLKK--GFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIY 593

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPD--------------EVF------------ 306
            + IN   + G  E    +  ++ K G+ PD              ++F            
Sbjct: 594 NVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKC 653

Query: 307 ---------LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
                     + LID     G+++ A  I      +G    I++YS L+      +N + 
Sbjct: 654 GRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTES 713

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A ELYE M   ++ P + + + LI  LC    + +            L P+ I Y IL+ 
Sbjct: 714 AFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIR 773

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPN 443
              +   +   +ML      +G++P+
Sbjct: 774 GYCKVGRLAEAMMLYDHMLVNGIMPD 799



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 195/465 (41%), Gaps = 43/465 (9%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y+ L+    ++G VD   + F  M   G+  + +    ++D    + ++      Y  M
Sbjct: 142 VYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEM 201

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDV---LAEMNAEVHPVDPDHITIGALMKACA 245
             K +     VFN+ +    + G V++  +    L E       VD + I  G  M    
Sbjct: 202 -CKGLGVYEFVFNSFL----KRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCM---- 252

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
              Q+  A + + M+ +         ++  IN   +    + A S+Y+ M +KG++PD V
Sbjct: 253 -GNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLV 311

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             S LI+    AGK+E    +   A  +G+ + ++ +SS+M A     +  KA+E+Y  M
Sbjct: 312 IYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRM 371

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
               + P V T + LI  LC   ++ +   V   +   GL P+ +TYS L+    + +++
Sbjct: 372 LKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENL 431

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR-------------YEKARTLNEHVLSFN 472
             G  L       G +P++V+   +I   SR+              ++  TLN ++  FN
Sbjct: 432 RDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYL--FN 489

Query: 473 SGRPQ-IENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVS 531
           +        K T   L +Y    +   IP V   + ++  L        + RL E L + 
Sbjct: 490 ALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAE------QGRLDEALALF 543

Query: 532 ADALKRSN------LCSLIDGF-GEYDP-RAFSLLEEAASFGIVP 568
              LK+         C+LIDGF  + DP     + +   S GI P
Sbjct: 544 FQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFP 588



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 37/278 (13%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +  +A+   F+  K   +P    +  L+      +D     Q+ +L+Q  G+  D  +Y 
Sbjct: 535 RLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYN 594

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            LI    + G V+ + E+  E++  G+EP++ TY  +I G       +KA   + +++  
Sbjct: 595 VLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCG 654

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
             +P+ + F  LI A  + G +D A  + + M  E  P +P+ +T   L+         +
Sbjct: 655 RTQPNAITFTILIDAYCKDGRMDDAMLIFSSM-LERGP-EPNILTYSCLIDGYFKTENTE 712

Query: 252 RAREVY-KM--------IHKYNI-------KGTPEVYTIAINCC---------------- 279
            A E+Y KM        I  Y+I       KG  E  ++A  C                 
Sbjct: 713 SAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILI 772

Query: 280 ---SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
               + G    A  +YD M   G++PD++   AL ++ 
Sbjct: 773 RGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEYG 810


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 197/424 (46%), Gaps = 13/424 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++GR+ +  DLL DM+ +GLL     Y+   +  CK    +KEA    +L+      P
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCK-MGWLKEAANVIELMTQNNLLP 311

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T+NML++   +    E AF++   ++   L  D   Y TLI  C +  K+   F++ 
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLL 371

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM   G++PN  T+  ++    K G++  A      M      PD V +N LI    ++
Sbjct: 372 EEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKA 431

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--T 268
           G +  AF  + EM  +   +D   +T+  +++      +++   E YK++     +G   
Sbjct: 432 GNMGEAFRTMDEMGRKNMKMDS--VTLNTILRTLCREKKLE---EAYKLLSSARKRGYFI 486

Query: 269 PEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
            EV Y   I    + G+ + A  ++D+M +K +IP  V  + +I      GK E A   L
Sbjct: 487 DEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKL 546

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E    G+     +Y++++       + +KA + +  M     KP V T N L+  LC  
Sbjct: 547 NELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCME 606

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             L K +++ +   S G   +T+TY+ L+ +  ++  ++    LLS+ +E  + P+   +
Sbjct: 607 GVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTY 666

Query: 448 KCII 451
             II
Sbjct: 667 NAII 670



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 190/433 (43%), Gaps = 12/433 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           L+S  R      +S   +   D  + G++     ++   +  C   K  K+A  F  ++ 
Sbjct: 177 LNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENK-FKDAVEFLNVMG 235

Query: 89  ----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               +P   T+N ++           A  +L  ++  GL  +   Y  L+    K G + 
Sbjct: 236 KYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLK 295

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               V   M    + P+V TY  LI+G    G++ +AF     M +  + PD V +N LI
Sbjct: 296 EAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLI 355

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
             C +   +  AF +L EM+ +   V P+ +T   ++K     G++D A      + +  
Sbjct: 356 NGCLEWSKISEAFKLLEEMSEK--GVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESG 413

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
                  Y   IN   + G+   A    D+M +K +  D V L+ ++       K+E A+
Sbjct: 414 FSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAY 473

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++L  A+ +G  +  +SY +L+       N  +AL+L++ MK  ++ P+  T N +I  L
Sbjct: 474 KLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGL 533

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   +  + +  L+++   GL P+  TY+ +L    R+ DVE      ++  E+   P++
Sbjct: 534 CQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDV 593

Query: 445 VMFKCII---GMC 454
             F C I   G+C
Sbjct: 594 --FTCNILLRGLC 604



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/421 (22%), Positives = 180/421 (42%), Gaps = 43/421 (10%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKV 143
           + +P+ +  +  +     S     AFQ+ + ++   L+ +     TL+ +  +   S  V
Sbjct: 130 LTSPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSV 189

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
               E F++ +  GI PNV+T+  +I G     +   A     +M   N  PD V +N +
Sbjct: 190 SFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTI 249

Query: 204 ITACGQSGAVDRAFDVLAEMNAE---------------------------------VHPV 230
           +    + G +  A D+L +M +                                   + +
Sbjct: 250 LDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNL 309

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFA 288
            PD  T   L+    N G+++ A ++   +   N+K  P+V  Y   IN C +      A
Sbjct: 310 LPDVWTYNMLINGLCNEGRIEEAFKLRDEME--NLKLLPDVVSYNTLINGCLEWSKISEA 367

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             + ++M++KGV P+ V  + ++ +    GK++ A   + + +  G S   ++Y++L+  
Sbjct: 368 FKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLING 427

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              A N  +A    + M    +K    T+N ++  LC   +L +  ++LS  +  G   +
Sbjct: 428 YCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFID 487

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLN 465
            ++Y  L+V   +  +V+  L L  + KE  +IP+ V + CIIG    C +  +    LN
Sbjct: 488 EVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLN 547

Query: 466 E 466
           E
Sbjct: 548 E 548



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 142/317 (44%), Gaps = 21/317 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAFRFFKLVPNP 90
           L R+ ++ E   LL    ++G   +D+V +      +F      +A+K      +    P
Sbjct: 463 LCREKKLEEAYKLLSSARKRGYF-IDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIP 521

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           +  T+N ++        +E A   L  + E+GL  D   Y T++    + G V+  F+  
Sbjct: 522 STVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFH 581

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           ++MV    +P+V T   L+ G    G + KA   +    SK    D V +N LIT+  + 
Sbjct: 582 NKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKE 641

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE-VYKMIHKYNIKGTP 269
           G +D AF++L+EM  E   + PDH T  A++ A  ++G++  A E + KM+ K N+   P
Sbjct: 642 GRLDDAFNLLSEM--EEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNL---P 696

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           +          Q    +   +V    T +      V  S  I      GK + A  I  E
Sbjct: 697 D----------QVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGE 746

Query: 330 AKNQGISVGIISYSSLM 346
           +K +GI+V   +Y +LM
Sbjct: 747 SKQKGITVDKSTYINLM 763


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 190/400 (47%), Gaps = 35/400 (8%)

Query: 54  KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113
           KGL    KV+ A  F+       I   FR  ++       ++ +L++      ++  A Q
Sbjct: 126 KGLCLNGKVHEALHFH----DHVIARGFRLNEV-------SYGILINGLCKMGETRAALQ 174

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           VLR +    +  +  +Y+T+I +  K   V   +E++ +M+   + P+V T+ ALI G  
Sbjct: 175 VLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFC 234

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
             GQ  +AFG +  M   N+ PD   FN L+ A  + G+     +VLA M  EV      
Sbjct: 235 MVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEV------ 288

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSV 291
                          QV++A+ V+ +I K  +  TP+V  YTI I    +    + A S+
Sbjct: 289 --------------NQVNKAKHVFNIIGKRRV--TPDVHSYTIIIKRLCKIKMVDEALSL 332

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           +++M  KG+ PD+V  S+LID    + ++  A+E+L +   +G    +I+Y+S + A   
Sbjct: 333 FNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCK 392

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
                KA+ L + +K   ++P ++T N LI  LC   +      +  D+   G      T
Sbjct: 393 NHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWT 452

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           Y+I++     +   +  + LL + +++G  P++V ++ II
Sbjct: 453 YNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETII 492



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/461 (19%), Positives = 169/461 (36%), Gaps = 90/461 (19%)

Query: 64  HARF-FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           H++F  N      AI   +R  ++ P+P++  FN ++     S ++     +        
Sbjct: 17  HSKFNSNHVDVHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSNNNNYPIAI-------- 68

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
                                     ++H +    I P++ T+  +I+     G++  AF
Sbjct: 69  -------------------------SLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAF 103

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
                +      PD +    LI     +G V  A      + A    ++   ++ G L+ 
Sbjct: 104 SVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNE--VSYGILIN 161

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
                G+   A +V + I    +     +Y+  I+   +      A  +Y  M  K V P
Sbjct: 162 GLCKMGETRAALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSP 221

Query: 303 DEVFLSALIDFAGHAGKVEAAFEIL----------------------------QEAKN-- 332
           D V  SALI      G+ + AF +                             +E KN  
Sbjct: 222 DVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVL 281

Query: 333 ----------------------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
                                 + ++  + SY+ ++      K   +AL L+  M+   +
Sbjct: 282 AVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGI 341

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P   T ++LI  LC  +++    E+L  M + G   + ITY+  L A  +   V+  + 
Sbjct: 342 TPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVA 401

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVL 469
           L+ + K+ G+ PN+  +  +I G+C   R+E A+ + + +L
Sbjct: 402 LVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLL 442



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 96/238 (40%), Gaps = 38/238 (15%)

Query: 25  VSEQLHSYN----RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  +HSY     RL +   + E + L  +M  KG+      Y +    +CKS++     
Sbjct: 306 VTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERI---- 361

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                                         A+++L  +   G  AD   YT+ +    K+
Sbjct: 362 ----------------------------SHAWELLDQMHARGQPADVITYTSFLHALCKN 393

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            +VD    +  ++ + GI+PN++TY  LIDG  K G+   A   +  +  K  K     +
Sbjct: 394 HQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTY 453

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           N +I      G  D A  +L +M  E +   PD +T   +++A     +  +A ++ +
Sbjct: 454 NIMINGLCLEGLFDEAMTLLEKM--EDNGCTPDVVTYETIIRALFKNDENHKAEKLLR 509


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 183/396 (46%), Gaps = 5/396 (1%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G + +      +M  +G+L     Y +    +CK+Q   K     
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ +   G++ D   Y +L+    K+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+     ++F  M   G++P + TYG L+ G A  G + +  G   +M    + P+  VF
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + LI A  + G VD+A  V ++M  +   ++PD +T G ++     +G+V+ A   ++ +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQ--GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +     VY   I+       W+ A  +  +M  +G+  D +F +++ID     G+V
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             + ++       G+   II+YS+L+     A    +A +L   M S+ +KP   T N L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           I   C   ++   + +  +M+S G+ P+ ITY+I+L
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIIL 591



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 209/469 (44%), Gaps = 47/469 (10%)

Query: 40  RISECIDL-LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN------PTL 92
           R S+ +D+ L  M + G +     Y+     +C   ++ +EA    +++P+      P +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRS-QEALELLQMMPDDGGDCPPDV 199

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            ++  +++      D + A+     + + G+  +   Y+++I    K+  +D   EV   
Sbjct: 200 VSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTS 259

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV  G+ PN  TY +++ G   +GQ  +A G    M S  V+PD V +N+L+    ++G 
Sbjct: 260 MVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR 319

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              A  +   M      + P+  T G L++  A  G +     +  ++ +  I     V+
Sbjct: 320 CTEARKMFDSMTK--RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +I I   ++ G  + A  V+  M ++G+ PD V    +I     +G+VE A    ++  +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALEL------------------------------- 361
           + +S G I Y+SL+ +      W KA EL                               
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497

Query: 362 ----YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
               ++ M  I +KP + T + LI   C   ++ +  ++L+ M S+G+ P+ +TY+ L+ 
Sbjct: 498 SEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLIN 557

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
              +   +E  L+L  + +  GV P+++ +  I+ G+  +RR   A+ L
Sbjct: 558 GYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 206/480 (42%), Gaps = 54/480 (11%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAG-----------LKADCK----------------- 128
           ML  +CA  + S+    VLR + + G           LK  C                  
Sbjct: 132 MLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDD 191

Query: 129 ---------LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
                     YTT+I    K G +D  +  +HEM++ GI PNV TY ++I    KA  + 
Sbjct: 192 GGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMD 251

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           KA      M    V P+   +N+++     SG    A   L +M+++   V+PD +T  +
Sbjct: 252 KAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSD--GVEPDVVTYNS 309

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           LM      G+   AR+++  + K  +K     Y   +   +  G       + D M + G
Sbjct: 310 LMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 369

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + P+    S LI      GKV+ A  +  + + QG++   ++Y +++G    +   + A+
Sbjct: 370 IHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAM 429

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
             +E M   +L P     N+LI +LC  D+  K  E++ +M   G+C +TI ++ ++ + 
Sbjct: 430 RYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH 489

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQ 477
            ++  V     L       GV P+++ +  +I G C + + ++A  L   ++S    +P 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM-KPD 548

Query: 478 ------IENKWTSL-----ALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRERLV 525
                 + N +  +     AL+++RE   +G  P +   + +L G  Q    A  +E  V
Sbjct: 549 CVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 608



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 154/340 (45%), Gaps = 12/340 (3%)

Query: 150 FHEMVNAG---IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           ++ M  AG   + PN+ TYG L+  C  AG++   F A G +  K    D + F  ++  
Sbjct: 76  YNRMARAGADEVTPNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKG 135

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                    A D++     ++  + P+  +   L+K   +  +   A E+ +M+      
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCI-PNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGD 194

Query: 267 GTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P+V  YT  IN   + GD + A   Y +M  +G++P+ V  S++I     A  ++ A 
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 325 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           E+L      G+     +Y+S++ G CS+ +  ++A+   + M S  ++P V T N+L+  
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP-KEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   +  +  ++   M   GL P   TY  LL     K  +     LL     +G+ PN
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 483
             +F  +I  C+  Y K   +++ +L F+  R Q  N  T
Sbjct: 374 HYVFSILI--CA--YAKQGKVDQAMLVFSKMRQQGLNPDT 409



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 117/509 (22%), Positives = 211/509 (41%), Gaps = 65/509 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +LM  C  +   +  F  L  V + G   D   +T ++   CA     DAM  
Sbjct: 89  PNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDI 148

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM--RSKNVKPDRVVFNALITA 206
           V   M   G  PNV +Y  L+ G     +  +A     +M     +  PD V +  +I  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G +D+A+    EM      + P+ +T  +++ A   A  +D+A EV          
Sbjct: 209 FFKEGDLDKAYGTYHEMLD--RGILPNVVTYSSIIAALCKAQAMDKAMEVLT-------- 258

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                                       M K GV+P+    ++++     +G+ + A   
Sbjct: 259 ---------------------------SMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L++  + G+   +++Y+SLM          +A ++++ M    LKP ++T   L+     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L +   +L  M   G+ PN   +SIL+ A  ++  V+  +++ S+ ++ G+ P+ V 
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 447 FKCIIG-MC-SRRYEKARTLNEHVLS---------FNSGRPQ--IENKW---TSLALMVY 490
           +  +IG +C S R E A    E ++          +NS      I +KW     L L + 
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 491 REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--- 547
              I   TI    ++       ++  +  + + +V  +GV  D +  S   +LIDG+   
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYS---TLIDGYCLA 527

Query: 548 GEYDPRAFSLLEEAASFGIVP-CVSFKEI 575
           G+ D  A  LL    S G+ P CV++  +
Sbjct: 528 GKMD-EATKLLASMVSVGMKPDCVTYNTL 555



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/476 (21%), Positives = 200/476 (42%), Gaps = 46/476 (9%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
            +YN ++      G+  E I  L+ M   G+      Y++    +CK+ +   EA + F 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC-TEARKMFD 328

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K    P ++T+  L+   A+         +L L+   G+  +  +++ LI   AK G
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KVD    VF +M   G+ P+  TYG +I    K+G+V  A   +  M  + + P  +V+N
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYN 448

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +LI +       D+A +++ EM      +  D I   +++ +    G+V  + +++ ++ 
Sbjct: 449 SLIHSLCIFDKWDKAKELILEMLD--RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +K     Y+  I+     G  + A  +   M   G+ PD V  + LI+      ++E
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  + +E ++ G+S  II+Y+ ++      +    A ELY  +     +  +ST N ++
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL 626

Query: 382 TALCDGDQLPKTMEV-----LSDMK------------------------------SLGLC 406
             LC  +   + + +     L+D++                              + GL 
Sbjct: 627 HGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLV 686

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
           P+  TYS++      +  +E    L    +E+G   N  M   I+    +R +  R
Sbjct: 687 PDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/193 (17%), Positives = 84/193 (43%), Gaps = 7/193 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +  R+ + + L  +ME  G+      Y+     + ++++       +  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 87  VPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             + T   LST+N+++     +  ++ A ++ + +    L+ + + +  +I    K G+ 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   ++F  +   G+ P+V TY  + +   + G + +    +  M       +  + N++
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 730

Query: 204 ITACGQSGAVDRA 216
           +    Q G + RA
Sbjct: 731 VRKLLQRGDITRA 743


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 196/416 (47%), Gaps = 12/416 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P L++++ L++   +++D   A  + RL+   +E+ L+ D  L++ LI+  A++   DA 
Sbjct: 188 PDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAA 247

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALIT 205
            E+       G+ P  +   ALI     AG+VA+A   +     +  +KP    +NAL+ 
Sbjct: 248 LELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLK 307

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              +  ++  A  VL EM+     V PD  T   L+ A   AG+ + AR + K +    +
Sbjct: 308 GYVRIASLKNAEQVLDEMSQ--CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGV 365

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K +  V++  +      GDW+ A +V  +M   GV PD  F + +ID  G    +  A +
Sbjct: 366 KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMD 425

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
              + + +GI   ++++++L+ A        +A EL+E M+     P  +T N +I  L 
Sbjct: 426 AFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLG 485

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           + +       +LS+MK  GL PN ITY+ L+    R    +  +  +   K DG+ P+  
Sbjct: 486 EQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPT 545

Query: 446 MFKCIIGMCSRRYEKARTLNEHVLSFNS-GRPQIENKWTSLALMVYREAIVAGTIP 500
           M+  ++   ++     R L   V+++ +  +  I  +      ++Y E I +G  P
Sbjct: 546 MYHALVNAYAQ-----RGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAP 596



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 19/127 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P  +T+N+++++    +  EG   +L  ++E GL  +   YTTL+    +SG+       
Sbjct: 472 PGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDC 531

Query: 143 VDAM--------FEVFHEMVNA----GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           ++AM          ++H +VNA    G+ P+V TY  L+    +  Q  K    Y  M +
Sbjct: 532 IEAMKADGLKPSPTMYHALVNAYAQRGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMIT 591

Query: 191 KNVKPDR 197
               PDR
Sbjct: 592 SGCAPDR 598


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 183/396 (46%), Gaps = 5/396 (1%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G + +      +M  +G+L     Y +    +CK+Q   K     
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ +   G++ D   Y +L+    K+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+     ++F  M   G++P + TYG L+ G A  G + +  G   +M    + P+  VF
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + LI A  + G VD+A  V ++M  +   ++PD +T G ++     +G+V+ A   ++ +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQ--GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +     VY   I+       W+ A  +  +M  +G+  D +F +++ID     G+V
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             + ++       G+   II+YS+L+     A    +A +L   M S+ +KP   T N L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           I   C   ++   + +  +M+S G+ P+ ITY+I+L
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIIL 591



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/469 (22%), Positives = 209/469 (44%), Gaps = 47/469 (10%)

Query: 40  RISECIDL-LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN------PTL 92
           R S+ +D+ L  M + G +     Y+     +C   ++ +EA    +++P+      P +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRS-QEALELLQMMPDDGGDCPPDV 199

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            ++  +++      D + A+     + + G+  +   Y+++I    K+  +D   EV   
Sbjct: 200 VSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTS 259

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV  G+ PN  TY +++ G   +GQ  +A G    M S  V+PD V +N+L+    ++G 
Sbjct: 260 MVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR 319

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              A  +   M      + P+  T G L++  A  G +     +  ++ +  I     V+
Sbjct: 320 CTEARKMFDSMTK--RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +I I   ++ G  + A  V+  M ++G+ PD V    +I     +G+VE A    ++  +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALEL------------------------------- 361
           + +S G I Y+SL+ +      W KA EL                               
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497

Query: 362 ----YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
               ++ M  I +KP + T + LI   C   ++ +  ++L+ M S+G+ P+ +TY+ L+ 
Sbjct: 498 SEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLIN 557

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
              +   +E  L+L  + +  GV P+++ +  I+ G+  +RR   A+ L
Sbjct: 558 GYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 118/500 (23%), Positives = 213/500 (42%), Gaps = 60/500 (12%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-----------LKA 125
           IK+ FR   +   P      +L  +CA  + S+    VLR + + G           LK 
Sbjct: 118 IKKGFRVDAIAFTP------LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 126 DCK--------------------------LYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
            C                            YTT+I    K G +D  +  +HEM++ GI 
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PNV TY ++I    KA  + KA      M    V P+   +N+++     SG    A   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L +M+++   V+PD +T  +LM      G+   AR+++  + K  +K     Y   +   
Sbjct: 292 LKKMHSD--GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
           +  G       + D M + G+ P+    S LI      GKV+ A  +  + + QG++   
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++Y +++G    +   + A+  +E M   +L P     N+LI +LC  D+  K  E++ +
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILE 469

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRR 457
           M   G+C +TI ++ ++ +  ++  V     L       GV P+++ +  +I G C + +
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGK 529

Query: 458 YEKARTLNEHVLSFNSGRPQ------IENKWTSL-----ALMVYREAIVAGTIPTVEVVS 506
            ++A  L   ++S    +P       + N +  +     AL+++RE   +G  P +   +
Sbjct: 530 MDEATKLLASMVSVGM-KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYN 588

Query: 507 KVL-GCLQLPYNADIRERLV 525
            +L G  Q    A  +E  V
Sbjct: 589 IILQGLFQTRRTAAAKELYV 608



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 155/340 (45%), Gaps = 12/340 (3%)

Query: 150 FHEMVNAG---IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           ++ M  AG   + PN+ TYG LI  C  AG++   F A G +  K  + D + F  L+  
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                    A D++     ++  + P+  +   L+K   +  +   A E+ +M+      
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCI-PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD 194

Query: 267 GTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P+V  YT  IN   + GD + A   Y +M  +G++P+ V  S++I     A  ++ A 
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 325 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           E+L      G+     +Y+S++ G CS+ +  ++A+   + M S  ++P V T N+L+  
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP-KEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   +  +  ++   M   GL P   TY  LL     K  +     LL     +G+ PN
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 483
             +F  +I  C+  Y K   +++ +L F+  R Q  N  T
Sbjct: 374 HYVFSILI--CA--YAKQGKVDQAMLVFSKMRQQGLNPDT 409



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 117/509 (22%), Positives = 212/509 (41%), Gaps = 65/509 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM--RSKNVKPDRVVFNALITA 206
           V   M   G  PNV +Y  L+ G     +  +A     +M     +  PD V +  +I  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G +D+A+    EM      + P+ +T  +++ A   A  +D+A EV          
Sbjct: 209 FFKEGDLDKAYGTYHEMLD--RGILPNVVTYSSIIAALCKAQAMDKAMEVLT-------- 258

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                                       M K GV+P+    ++++     +G+ + A   
Sbjct: 259 ---------------------------SMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L++  + G+   +++Y+SLM          +A ++++ M    LKP ++T   L+     
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYAT 351

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L +   +L  M   G+ PN   +SIL+ A  ++  V+  +++ S+ ++ G+ P+ V 
Sbjct: 352 KGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVT 411

Query: 447 FKCIIG-MC-SRRYEKARTLNEHVLS---------FNSGRPQ--IENKW---TSLALMVY 490
           +  +IG +C S R E A    E ++          +NS      I +KW     L L + 
Sbjct: 412 YGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEML 471

Query: 491 REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--- 547
              I   TI    ++       ++  +  + + +V  +GV  D +  S   +LIDG+   
Sbjct: 472 DRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYS---TLIDGYCLA 527

Query: 548 GEYDPRAFSLLEEAASFGIVP-CVSFKEI 575
           G+ D  A  LL    S G+ P CV++  +
Sbjct: 528 GKMD-EATKLLASMVSVGMKPDCVTYNTL 555



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/476 (21%), Positives = 200/476 (42%), Gaps = 46/476 (9%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
            +YN ++      G+  E I  L+ M   G+      Y++    +CK+ +   EA + F 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC-TEARKMFD 328

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K    P ++T+  L+   A+         +L L+   G+  +  +++ LI   AK G
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KVD    VF +M   G+ P+  TYG +I    K+G+V  A   +  M  + + P  +V+N
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYN 448

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +LI +       D+A +++ EM      +  D I   +++ +    G+V  + +++ ++ 
Sbjct: 449 SLIHSLCIFDKWDKAKELILEMLD--RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMV 506

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +K     Y+  I+     G  + A  +   M   G+ PD V  + LI+      ++E
Sbjct: 507 RIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRME 566

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  + +E ++ G+S  II+Y+ ++      +    A ELY  +     +  +ST N ++
Sbjct: 567 DALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIIL 626

Query: 382 TALCDGDQLPKTMEV-----LSDMK------------------------------SLGLC 406
             LC  +   + + +     L+D++                              + GL 
Sbjct: 627 HGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLV 686

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
           P+  TYS++      +  +E    L    +E+G   N  M   I+    +R +  R
Sbjct: 687 PDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 34/193 (17%), Positives = 84/193 (43%), Gaps = 7/193 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +  R+ + + L  +ME  G+      Y+     + ++++       +  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 87  VPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             + T   LST+N+++     +  ++ A ++ + +    L+ + + +  +I    K G+ 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   ++F  +   G+ P+V TY  + +   + G + +    +  M       +  + N++
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 730

Query: 204 ITACGQSGAVDRA 216
           +    Q G + RA
Sbjct: 731 VRKLLQRGDITRA 743


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 211/470 (44%), Gaps = 25/470 (5%)

Query: 5   GKNMLQFPYP------NGKHANYAH--DVSEQLHSYNRLIRQGRISECIDLLEDMERKGL 56
           G  ML  P P      N  H+   H   + + L S+NRL+        +D       K L
Sbjct: 18  GACMLSPPLPFFSSSQNNFHSKSLHFNTLDDALSSFNRLLHMHPPPSIVDFA-----KLL 72

Query: 57  LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
             + K+ H   ++   S     ++F     VP P + T N+L++          AF VL 
Sbjct: 73  TSIAKMKH---YSTVLSLSTQMDSFG----VP-PNVYTLNILINSFCHLNRVGFAFSVLA 124

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
            + + G + D   +TTLI      GK+     +F +M++ G +PNV TYG LI+G  K G
Sbjct: 125 KILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVG 184

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
             + A      M   N +PD V++ ++I +  +   V  AF++ ++M  +   + PD  T
Sbjct: 185 NTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ--GISPDIFT 242

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +L+ A  N  +      +   +    I     +++  ++   + G    A  + D M 
Sbjct: 243 YTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMI 302

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           ++GV PD V  + L+D      +++ A ++      +G +  +ISY++L+          
Sbjct: 303 QRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKID 362

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           KA+ L+E M   +  P   T N L+  LC   +L   + +  +M + G  P+ +TYSILL
Sbjct: 363 KAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILL 422

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
            +  +   +E  + LL   +   + P++ ++  II GMC +   E AR L
Sbjct: 423 DSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDL 472



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 167/348 (47%), Gaps = 10/348 (2%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K I E F+       P + T+  L++      ++  A ++LR +++   + D  +YT++I
Sbjct: 160 KMIDEGFQ-------PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSII 212

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +  K  +V   F +F +MV  GI P++ TY +L+       +          M +  + 
Sbjct: 213 DSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKIL 272

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V+F+ ++ A  + G V  A +++  M      V+PD +T   LM       ++D A 
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQ--RGVEPDVVTYTTLMDGHCLQSEMDEAV 330

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           +V+ M+ +         YT  IN   +    + A  ++++M +K  IPD    + L+   
Sbjct: 331 KVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGL 390

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
            H G+++ A  +  E   +G    +++YS L+ +    ++ ++A+ L + +++  L P +
Sbjct: 391 CHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDI 450

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER 421
              N +I  +C   +L    ++ S++ S GL P+  TY+I++   C+R
Sbjct: 451 QVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKR 498



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 140/328 (42%), Gaps = 4/328 (1%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D     F+ +++    P++  +  L+   AK    +        M S  V P+    N 
Sbjct: 46  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNI 105

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI +      V  AF VLA++    H   PD  T   L++     G++  A  ++  +  
Sbjct: 106 LINSFCHLNRVGFAFSVLAKILKLGH--QPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 163

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              +     Y   IN   + G+   A  +   M +    PD V  +++ID      +V  
Sbjct: 164 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTE 223

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           AF +  +   QGIS  I +Y+SL+ A  N   W+    L   M + K+ P V   + ++ 
Sbjct: 224 AFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVD 283

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           ALC   ++ +  E++  M   G+ P+ +TY+ L+     + +++  + +       G  P
Sbjct: 284 ALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAP 343

Query: 443 NLVMFKCII-GMCS-RRYEKARTLNEHV 468
           +++ +  +I G C   + +KA  L E +
Sbjct: 344 DVISYTTLINGYCKIHKIDKAMYLFEEM 371



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 176/399 (44%), Gaps = 16/399 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + G  S  I LL  ME+        +Y +   ++CK ++ + EAF  F  +     
Sbjct: 178 NGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQ-VTEAFNLFSQMVGQGI 236

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+  L+    +  + +    +L  +  + +  D  +++T++    K GKV    E
Sbjct: 237 SPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHE 296

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M+  G+EP+V TY  L+DG     ++ +A   + +M  K   PD + +  LI    
Sbjct: 297 IVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYC 356

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +D+A  +  EM  +     PD  T   LM    + G   R ++   + H+   +G 
Sbjct: 357 KIHKIDKAMYLFEEMCRK--EWIPDTKTYNTLMYGLCHVG---RLQDAIALFHEMVARGQ 411

Query: 269 -PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P++  Y+I ++   +    E A ++   +    + PD    + +ID    AG++EAA +
Sbjct: 412 MPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARD 471

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +     ++G+   + +Y+ ++          +A +L+  M      P   T N +     
Sbjct: 472 LFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFL 531

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
             ++  + +++L +M + G   ++     L+++   +DD
Sbjct: 532 QNNETLRAIQLLEEMLARGFSADS---CFLMLSVLSEDD 567



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 3/223 (1%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +A DV       N   +  +I + + L E+M RK  +   K Y+   + +C   +     
Sbjct: 341 FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAI 400

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F ++V     P L T+++L+     ++  E A  +L+ ++ + L  D ++Y  +I   
Sbjct: 401 ALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGM 460

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            ++G+++A  ++F  + + G+ P+V TY  +I G  K G + +A   +  M   +  PD 
Sbjct: 461 CRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDG 520

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
             +N +     Q+    RA  +L EM A     D   + +  L
Sbjct: 521 CTYNTIARGFLQNNETLRAIQLLEEMLARGFSADSCFLMLSVL 563


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 216/469 (46%), Gaps = 24/469 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N  +      + +  L  M  +G + +   ++     + +S    K  + F +L     L
Sbjct: 97  NAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELKSKVVL 156

Query: 93  S--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              +F +++  C  +      F++L +++E GL  +  +YTTLI  C K G V     +F
Sbjct: 157 DAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLF 216

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M   G+ PN HTY  L++G  K G   + F  Y  M+   + P+   +N LI+     
Sbjct: 217 CKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNG 276

Query: 211 GAVDRAFDVLAEMNAE--VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
           G VD+AF V AEM  +     V   +I IG L +         +  E  K++HK N  G 
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRG-------KKFGEAVKLVHKVNKVGL 329

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           +P +  Y I IN     G  + A  +++ +   G+ P  V  + LI        +  A +
Sbjct: 330 SPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALD 389

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +++E + + I+   ++Y+ L+ A +     +KA E++  M+   L P V T + LI  LC
Sbjct: 390 LVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLC 449

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               + +  ++   +  + L PN++ Y+ ++    ++      L LL++    G++PN+ 
Sbjct: 450 VHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVA 509

Query: 446 MFKCIIGMCSR--RYEKARTLNEHVLSFNSG-RPQIENKWTSLALMVYR 491
            F   IG+  R  ++++A  L   ++  NSG +P +     SL  MV++
Sbjct: 510 SFCSTIGLLCRDEKWKEAELLLGQMI--NSGLKPSV-----SLYKMVHK 551



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 196/443 (44%), Gaps = 24/443 (5%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           LY T++     S   D      H M++ G  P  +T+  L+    ++    KA+  +  +
Sbjct: 91  LYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNEL 150

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           +SK V  D   F  +I  C ++G   + F +LA +  E   + P+ +    L+  C   G
Sbjct: 151 KSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAML--EEFGLSPNVVIYTTLIDGCCKYG 207

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            V  A+ ++  + +  +   P  Y++ +N   + G       +Y++M + G++P+    +
Sbjct: 208 NVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYN 267

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            LI    + G V+ AF++  E + +GI+ G+++Y+ L+G     K + +A++L   +  +
Sbjct: 268 CLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKV 327

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            L P + T N LI   CD  ++   + + + +KS GL P  +TY+ L+    + +++   
Sbjct: 328 GLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGA 387

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 488
           L L+ + +E  + P+ V +  +I   +R     +    H L   SG   + + +T   L+
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGL--VPDVYTYSVLI 445

Query: 489 VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFG 548
                 V G +     + K LG + L  N+ I   ++        +              
Sbjct: 446 --HGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSY------------- 490

Query: 549 EYDPRAFSLLEEAASFGIVPCVS 571
               RA  LL E    G+VP V+
Sbjct: 491 ----RALRLLNEMVHSGMVPNVA 509


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 194/435 (44%), Gaps = 6/435 (1%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G + +      +M  +G+L     Y +    +CK+Q   K     
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ +   G++ D   Y +L+    K+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+     ++F  M   G++P + TYG L+ G A  G + +  G   +M    + P+  VF
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + LI A  + G VD+A  V ++M  +   ++PD +T G ++     +G+V+ A   ++ +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQ--GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +     VY   I+       W+ A  +  +M  +G+  D +F +++ID     G+V
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             + ++       G+   II+YS+L+     A    +A +L   M S+ +KP   T N L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I   C   ++   + +  +M+S G+ P+ ITY+I+L    +         L     E G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 441 IPNLVMFKCII-GMC 454
              L  +  I+ G+C
Sbjct: 616 QLELSTYNIILHGLC 630



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/469 (22%), Positives = 207/469 (44%), Gaps = 47/469 (10%)

Query: 40  RISECIDL-LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN------PTL 92
           R S+ +D+ L  M + G +     Y+     +C   ++ +EA    +++P+      P +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRS-QEALELLQMMPDDGGDCPPDV 199

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            ++  +++      D + A+     + + G+  +   Y+++I    K+  +D   EV   
Sbjct: 200 VSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTS 259

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV  G+ PN  TY +++ G   +GQ  +A G    M S  V+PD V +N+L+    ++G 
Sbjct: 260 MVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR 319

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              A  +   M      + P+  T G L++  A  G +     +  ++ +  I     V+
Sbjct: 320 CTEARKMFDSMTK--RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +I I   ++ G  + A  V+  M ++G+ PD V    +I     +G+VE A    ++  +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALEL------------------------------- 361
           + +S G I Y+SL+ +      W KA EL                               
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497

Query: 362 ----YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
               ++ M  I +KP + T + LI   C   ++ +  ++L+ M S+G+ P+ +TY+ L+ 
Sbjct: 498 SEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLIN 557

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 464
              +   +E  L+L  + +  GV P+++ +  I+     +RR   A+ L
Sbjct: 558 GYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 178/416 (42%), Gaps = 46/416 (11%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-----------LKA 125
           IK+ FR   +   P      +L  +CA  + S+    VLR + + G           LK 
Sbjct: 118 IKKGFRVDAIAFTP------LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 126 DCK--------------------------LYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
            C                            YTT+I    K G +D  +  +HEM++ GI 
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PNV TY ++I    KA  + KA      M    V P+   +N+++     SG    A   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L +M+++   V+PD +T  +LM      G+   AR+++  + K  +K     Y   +   
Sbjct: 292 LKKMHSD--GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
           +  G       + D M + G+ P+    S LI      GKV+ A  +  + + QG++   
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++Y +++G    +   + A+  +E M   +L P     N+LI +LC  D+  K  E++ +
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILE 469

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           M   G+C +TI ++ ++ +  ++  V     L       GV P+++ +  +I G C
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 153/334 (45%), Gaps = 12/334 (3%)

Query: 150 FHEMVNAG---IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           ++ M  AG   + PN+ TYG LI  C  AG++   F A G +  K  + D + F  L+  
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                    A D++     ++  + P+  +   L+K   +  +   A E+ +M+      
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCI-PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD 194

Query: 267 GTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P+V  YT  IN   + GD + A   Y +M  +G++P+ V  S++I     A  ++ A 
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 325 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           E+L      G+     +Y+S++ G CS+ +  ++A+   + M S  ++P V T N+L+  
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP-KEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   +  +  ++   M   GL P   TY  LL     K  +     LL     +G+ PN
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477
             +F  +I  C+  Y K   +++ +L F+  R Q
Sbjct: 374 HYVFSILI--CA--YAKQGKVDQAMLVFSKMRQQ 403



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 119/510 (23%), Positives = 215/510 (42%), Gaps = 67/510 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM--RSKNVKPDRVVFNALITA 206
           V   M   G  PNV +Y  L+ G     +  +A     +M     +  PD V +  +I  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G +D+A+    EM      + P+ +T  +++ A   A  +D+A EV          
Sbjct: 209 FFKEGDLDKAYGTYHEMLD--RGILPNVVTYSSIIAALCKAQAMDKAMEVLT-------- 258

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                                       M K GV+P+    ++++     +G+ + A   
Sbjct: 259 ---------------------------SMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 327 LQEAKNQGISVGIISYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           L++  + G+   +++Y+SLM   C N +   +A ++++ M    LKP ++T   L+    
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGR-CTEARKMFDSMTKRGLKPEITTYGTLLQGYA 350

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L +   +L  M   G+ PN   +SIL+ A  ++  V+  +++ S+ ++ G+ P+ V
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 446 MFKCIIG-MC-SRRYEKARTLNEHVLS---------FNSGRPQ--IENKW---TSLALMV 489
            +  +IG +C S R E A    E ++          +NS      I +KW     L L +
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 490 YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF-- 547
               I   TI    ++       ++  +  + + +V  +GV  D +  S   +LIDG+  
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYS---TLIDGYCL 526

Query: 548 -GEYDPRAFSLLEEAASFGIVP-CVSFKEI 575
            G+ D  A  LL    S G+ P CV++  +
Sbjct: 527 AGKMD-EATKLLASMVSVGMKPDCVTYNTL 555



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 197/475 (41%), Gaps = 44/475 (9%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
            +YN ++      G+  E I  L+ M   G+      Y++    +CK+ +   EA + F 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC-TEARKMFD 328

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K    P ++T+  L+   A+         +L L+   G+  +  +++ LI   AK G
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KVD    VF +M   G+ P+  TYG +I    K+G+V  A   +  M  + + P  +V+N
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYN 448

Query: 202 ALITACGQSGAVDRAFDVLAEM------------NAEVHP-------------------- 229
           +LI +       D+A +++ EM            N+ +                      
Sbjct: 449 SLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRI 508

Query: 230 -VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            V PD IT   L+     AG++D A ++   +    +K     Y   IN   +    E A
Sbjct: 509 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-G 347
             ++ +M   GV PD +  + ++       +  AA E+       G  + + +Y+ ++ G
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
            C N     +AL +++++    L+    T N +I AL    +  +  ++ + + + GL P
Sbjct: 629 LCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
           +  TYS++      +  +E    L    +E+G   N  M   I+    +R +  R
Sbjct: 688 DVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 34/193 (17%), Positives = 84/193 (43%), Gaps = 7/193 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +  R+ + + L  +ME  G+      Y+     + ++++       +  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 87  VPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             + T   LST+N+++     +  ++ A ++ + +    L+ + + +  +I    K G+ 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   ++F  +   G+ P+V TY  + +   + G + +    +  M       +  + N++
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 730

Query: 204 ITACGQSGAVDRA 216
           +    Q G + RA
Sbjct: 731 VRKLLQRGDITRA 743


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 181/380 (47%), Gaps = 6/380 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P L++++ L++   +++D   A  + RL+   +E+ L+ D  L++ LI+  A++   DA 
Sbjct: 188 PDLASYSHLLASLLNTRDPPDAALLERLLGDLRESRLEPDAPLFSDLISAFARAALPDAA 247

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALIT 205
            E+       G+ P  +   ALI     AG+VA+A   +     +  +KP    +NAL+ 
Sbjct: 248 LELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNALLK 307

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              +  ++  A  VL EM+     V PD  T   L+ A   AG+ + AR + K +    +
Sbjct: 308 GYVRIASLKNAEQVLDEMSQ--CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGV 365

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K +  V++  +      GDW+ A +V  +M   GV PD  F + +ID  G    +  A +
Sbjct: 366 KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMD 425

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
              + + +GI   ++++++L+ A        +A EL+E M+     P  +T N +I  L 
Sbjct: 426 AFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLG 485

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           + +       +LS+MK  GL PN ITY+ L+    R    +  +  +   K DG+ P+  
Sbjct: 486 EQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPT 545

Query: 446 MFKCIIGMCSRRYEKARTLN 465
           M+  ++   ++R      LN
Sbjct: 546 MYHALVNAYAQRGLADHALN 565



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 165/342 (48%), Gaps = 5/342 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P    +N L+         + A QVL  + + G+  D   Y+ L+    ++G+ ++   
Sbjct: 296 KPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARI 355

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G++P+ + +  ++ G    G   KAF     M++  V+PDR  +N +I   G
Sbjct: 356 LLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFG 415

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +  A D   +M  E   ++PD +T   L+ A    G+ DRA E+++ + + N    
Sbjct: 416 KYNCLGHAMDAFNKMREEG--IEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPG 473

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I IN   +   WE   ++  +M ++G++P+ +  + L+D  G +G+ + A + ++
Sbjct: 474 TTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIE 533

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             K  G+      Y +L+ A +       AL + + MK+  L+ ++  +N+LI A  +  
Sbjct: 534 AMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDR 593

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEV 427
           ++ +   VL  M+  GL P+ ITY+ L   L+  E+ D V V
Sbjct: 594 RVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPV 635



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS--- 93
           R GR  E ID +E M+  GL     +YHA   N    +     A    K +    L    
Sbjct: 521 RSGRYKEAIDCIEAMKADGLKPSPTMYHA-LVNAYAQRGLADHALNVVKAMKADGLEVSI 579

Query: 94  -TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
              N L++     +    AF VL+ ++E GL+ D   YTTL+    +  + D +  ++ E
Sbjct: 580 LVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEE 639

Query: 153 MVNAGIEPNVHTYGALIDG 171
           M+ +G  P+      L  G
Sbjct: 640 MITSGCAPDRKARAMLRSG 658


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 204/436 (46%), Gaps = 11/436 (2%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D      +YN +I      GR+ E   +L++ME   L       +     +CK++K ++E
Sbjct: 249 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK-LEE 307

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A++ F+       NP   T+  L+         + A+++   + +AG  A+  +YT+LI 
Sbjct: 308 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 367

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
                G+ +   +VF E++  G +P++      +D   KAG+V K    +  +RS    P
Sbjct: 368 NFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 427

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D   ++ LI    ++G      ++   M  +   +D       A++     +G+V +A E
Sbjct: 428 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR--AYNAVVDGFCKSGKVHKAYE 485

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + + + +  ++ T   Y   ++  ++    + A  ++++   KG+  + V  S+LID  G
Sbjct: 486 ILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFG 545

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+++ A+ IL+E   +G++  + +++SL+ A   A+   +AL  ++ MK +K  P   
Sbjct: 546 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTY 605

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T + LI  LC   +  K      DM+  GL PN +TY+ ++    +  ++     L  + 
Sbjct: 606 TYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERF 665

Query: 436 KEDGVIPNLVMFKCII 451
           K +G IP+   F  +I
Sbjct: 666 KANGGIPDAASFNALI 681



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 200/464 (43%), Gaps = 45/464 (9%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN +I      GR  +   LLE +  +G +     +++    + K +K + EA   F+
Sbjct: 186 YAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRK-VDEALSLFE 244

Query: 86  LV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P  ST+N+++ +       E A+++L  ++ A L  +      ++    K+ K
Sbjct: 245 VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK 304

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           ++  +++F      G  P+  TY +LIDG  K GQV +A+  +  M       + VV+ +
Sbjct: 305 LEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTS 364

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI      G  +    V  E+        PD   +   M     AG+V++ R +++ I  
Sbjct: 365 LIRNFFIHGRKEDGHKVFKELIR--RGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRS 422

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           Y        Y+I I+  ++ G      +++  M ++G   D    +A++D    +GKV  
Sbjct: 423 YGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHK 482

Query: 323 AFEIL-----------------------------------QEAKNQGISVGIISYSSLMG 347
           A+EIL                                   +EAK++GI + ++ YSSL+ 
Sbjct: 483 AYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLID 542

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                    +A  + E M    L P V T N+L+ AL   +++ + +     MK +   P
Sbjct: 543 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPP 602

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           NT TYSIL+    R        +     ++ G++PN+V +  +I
Sbjct: 603 NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 646



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 167/344 (48%), Gaps = 22/344 (6%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKG------LLD--MDKVYHARFFNVCKSQKAIKE 79
           Y  LIR     GR  +   + +++ R+G      LL+  MD V+ A      +  + I E
Sbjct: 362 YTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKA---GEVEKGRMIFE 418

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             R +  +P+  + ++++L+     +  +     +   +++ G   D + Y  ++    K
Sbjct: 419 DIRSYGFLPD--VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCK 476

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           SGKV   +E+  EM    ++P V TYGA++DG AK  ++ +A+  +   +SK ++ + V+
Sbjct: 477 SGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVL 536

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +++LI   G+ G +D A+ +L EM  +   + P+  T  +L+ A   A +++ A   ++ 
Sbjct: 537 YSSLIDGFGKVGRIDEAYLILEEMMKK--GLTPNVYTWNSLLDALVKAEEINEALVCFQS 594

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +         Y+I IN   +   +  A   + DM K+G++P+ V  + +I      G 
Sbjct: 595 MKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGN 654

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
           +  A+ + +  K  G      S+++L+   SNA    +A+E Y+
Sbjct: 655 ITDAYSLFERFKANGGIPDAASFNALIEGMSNA---NRAMEAYQ 695



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 179/395 (45%), Gaps = 17/395 (4%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +L   P  S + +L+   A ++  E A ++LR +QE G +    L+TTL+   A+ G+V 
Sbjct: 38  RLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVA 97

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  E+  + +EP++  Y   ID   KAG V  A   +  ++++ +KPD V + ++I
Sbjct: 98  DALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMI 157

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               ++G +  A ++ A+M AE     P       ++    +AG   R  + YK++ +  
Sbjct: 158 WVLCKAGRLGEAEELFAQMEAERSV--PCAYAYNTMIMGYGSAG---RFEDAYKLLERLR 212

Query: 265 IKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
            +G  P V  +   + C  +    + A S+++ M KK   P+    + +ID     G+VE
Sbjct: 213 ERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEPNSSTYNIIIDMLCLGGRVE 271

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A+ IL E ++  +   +++ + ++     A+  ++A +++E        P   T  +LI
Sbjct: 272 EAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLI 331

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACERKDDVEVGLMLLSQAKED 438
             L    Q+ +   +   M   G   N + Y+ L+       RK+D   G  +  +    
Sbjct: 332 DGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKED---GHKVFKELIRR 388

Query: 439 GVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSF 471
           G  P+L +    +    +    EK R + E + S+
Sbjct: 389 GCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY 423



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 170/388 (43%), Gaps = 54/388 (13%)

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           +A ++  A  A  +MR    +P    +  LI A  ++   +RA ++L +M    + V   
Sbjct: 22  RARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVH 81

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T   L++A A  GQV  A  +   +    ++    +Y + I+C  + G+ + AC  + 
Sbjct: 82  LFT--TLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFH 139

Query: 294 DMTKKGVIPDEVFLSALID--------------FA---------------------GHAG 318
           ++  +G+ PD+V  +++I               FA                     G AG
Sbjct: 140 ELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAG 199

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           + E A+++L+  + +G    ++S++S++      +   +AL L+E MK    +P  ST N
Sbjct: 200 RFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYN 258

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            +I  LC G ++ +   +L +M+   L PN +T +I++    +   +E    +   A + 
Sbjct: 259 IIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQR 318

Query: 439 GVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQIENKWTSL----------- 485
           G  P+ V +  +I    ++   ++A  L E +L  ++G       +TSL           
Sbjct: 319 GCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKML--DAGHNANPVVYTSLIRNFFIHGRKE 376

Query: 486 -ALMVYREAIVAGTIPTVEVVSKVLGCL 512
               V++E I  G  P + +++  + C+
Sbjct: 377 DGHKVFKELIRRGCKPDLTLLNTYMDCV 404



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 87/212 (41%)

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L  A   A ++D A     ++ +   +     YT+ I   ++    E A  +   M + G
Sbjct: 16  LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 75

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
                   + L+      G+V  A  ++ E K   +   I+ Y+  +     A N   A 
Sbjct: 76  YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAC 135

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           + +  +K+  LKP   +  ++I  LC   +L +  E+ + M++    P    Y+ +++  
Sbjct: 136 KFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 195

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                 E    LL + +E G IP++V F  I+
Sbjct: 196 GSAGRFEDAYKLLERLRERGCIPSVVSFNSIL 227


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 196/411 (47%), Gaps = 13/411 (3%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
           Y+A    V ++++++K A   FK +     +P + T+N+L+    ++ + E        +
Sbjct: 170 YNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEM 229

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           +  G   +   Y T+I    K  K+   F++   M   G+ PN+ +Y  +I+G  + GQ+
Sbjct: 230 ERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQM 289

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            +       M  +   PDRV FN LI      G   +A  + AEM    + + P+ +T  
Sbjct: 290 KETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK--NGLSPNVVTYT 347

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+ +   AG ++RA E    +    +      YT  I+  SQ G  + A  +  +M + 
Sbjct: 348 TLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVEN 407

Query: 299 GVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           G  P  +  +ALI+  GH   G++E A  +LQE   +G    ++SYS+++      +  +
Sbjct: 408 GFTPTIITYNALIN--GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELE 465

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           KA +L   M +  + P V+T ++LI  LC   +L +  ++  +M SLGL P+ +TY+ L+
Sbjct: 466 KAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLI 525

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTL 464
            A   + D++  L L  +  + G  P++V +  +I      SR  E  R L
Sbjct: 526 NAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLL 576



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 190/440 (43%), Gaps = 48/440 (10%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  +++YN LIR     G +   +    +MER G L     Y+      CK +K I EA
Sbjct: 199 VSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRK-IGEA 257

Query: 81  FRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           F+  +L+     NP L ++N++++ +C   +  E + ++L  + +     D   + TLI 
Sbjct: 258 FKLLRLMALKGLNPNLISYNVVINGLCREGQMKETS-EILEEMSKRRYVPDRVTFNTLIN 316

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
                G       +  EMV  G+ PNV TY  LI+   KAG + +A      MR + + P
Sbjct: 317 GYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHP 376

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           +   +  LI    Q G + +A+ ++ EM    +   P  IT  AL               
Sbjct: 377 NGRTYTTLIDGFSQQGFLKQAYQIMKEMVE--NGFTPTIITYNAL--------------- 419

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
                               IN     G  E A  +  +M ++G IPD V  S +I    
Sbjct: 420 --------------------INGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFC 459

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
              ++E AF++  E   +GIS  + +YSSL+      +   +  +L++ M S+ L P   
Sbjct: 460 RNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEV 519

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T  +LI A C    L K + +  +M   G  P+ +TY++L+    ++   +    LL + 
Sbjct: 520 TYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579

Query: 436 KEDGVIPNLVMFKCIIGMCS 455
             +  +PN + +  +I  C+
Sbjct: 580 LYEESVPNEITYNTLIDNCN 599



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 157/347 (45%), Gaps = 11/347 (3%)

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK-AF 182
           K+   ++  ++ +CA+   ++    + +   + G  P V +Y A++D   +  Q  K A 
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAE 188

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
           G +  M    V P+   +N LI     +G ++       EM  E +   P+ +T   ++ 
Sbjct: 189 GIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEM--ERNGCLPNVVTYNTIID 246

Query: 243 ACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKG 299
           A     ++ +  E +K++    +KG  P +  Y + IN   + G  +    + ++M+K+ 
Sbjct: 247 AYC---KLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRR 303

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
            +PD V  + LI+   + G    A  +  E    G+S  +++Y++L+ +   A N  +A+
Sbjct: 304 YVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAM 363

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           E  + M+   L P   T   LI        L +  +++ +M   G  P  ITY+ L+   
Sbjct: 364 EFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGH 423

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
                +E    LL +  E G IP++V +  II G C ++  EKA  L
Sbjct: 424 CILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQL 470



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 183/416 (43%), Gaps = 25/416 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R+G++ E  ++LE+M ++  +     ++      C      +      ++V N   
Sbjct: 281 NGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLS 340

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  L++    + +   A + L  +++ GL  + + YTTLI   ++ G +   +++
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EMV  G  P + TY ALI+G    G++  A G    M  +   PD V ++ +I+   +
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +++AF +  EM A+   + PD  T  +L++      ++    ++++ +    +    
Sbjct: 461 NQELEKAFQLKVEMVAK--GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDE 518

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  IN     GD + A  ++D+M +KG  PD V  + LI+      + + A  +L +
Sbjct: 519 VTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLK 578

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +      I+Y++L+  C+N + ++ AL                   AL+   C    
Sbjct: 579 LLYEESVPNEITYNTLIDNCNNLE-FKSAL-------------------ALMKGFCMKGL 618

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           + +   VL  M   G   N   Y++++    +  ++E    L  +    G  P+ V
Sbjct: 619 MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSV 674



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 144/342 (42%), Gaps = 59/342 (17%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN-- 89
           N + + G ++  ++ L+ M  +GL    + Y     +    Q  +K+A++  K +V N  
Sbjct: 351 NSMCKAGNLNRAMEFLDQMRDRGLHPNGRTY-TTLIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 90  -PTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
            PT+ T+N L++   +    +D+ G  Q +    E G   D   Y+T+I+   ++ +++ 
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEM---IERGFIPDVVSYSTIISGFCRNQELEK 466

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            F++  EMV  GI P+V TY +LI G  K  ++ +    +  M S  + PD V + +LI 
Sbjct: 467 AFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLIN 526

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVD---------------------------------P 232
           A    G +D+A  +  EM  +    D                                 P
Sbjct: 527 AYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVP 586

Query: 233 DHITIGALMKACAN---------------AGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
           + IT   L+  C N                G ++ A  V + + +   K   EVY + I+
Sbjct: 587 NEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIH 646

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
             S+ G+ E A ++Y +M   G  P  V + AL     H GK
Sbjct: 647 GHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGK 688



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 131/321 (40%), Gaps = 36/321 (11%)

Query: 274 IAINCCSQTGDWEFAC---SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           + +N   +TG+  F C   S Y   +   V    V   A ++       +  A  I+  A
Sbjct: 105 VVVNTVDETGEDLFQCLKNSYYQCKSSSAVFDLVVKSCARVNL------INKALSIVNLA 158

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALE-LYEHMKSIKLKPTVSTMNALITALCDGDQ 389
           K+ G   G++SY++++ A    K   K  E +++ M    + P V T N LI   C    
Sbjct: 159 KSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGN 218

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L   +    +M+  G  PN +TY+ ++ A  +   +     LL      G+ PNL+ +  
Sbjct: 219 LEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNV 278

Query: 450 II-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWT--------------SLALMVYREAI 494
           +I G+C     K  +    +L   S R  + ++ T                AL+++ E +
Sbjct: 279 VINGLCREGQMKETS---EILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMV 335

Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN---LCSLIDGFGE-- 549
             G  P V   + ++  +    N +   R +E L    D     N     +LIDGF +  
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLN---RAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQG 392

Query: 550 YDPRAFSLLEEAASFGIVPCV 570
           +  +A+ +++E    G  P +
Sbjct: 393 FLKQAYQIMKEMVENGFTPTI 413


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 203/473 (42%), Gaps = 43/473 (9%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  L +++ LI    ++ R+ E   L   M  KG++  D V ++   N       ++E  
Sbjct: 272 SPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVP-DLVIYSILINGLFRAGKLEEGN 330

Query: 82  RFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F +         +  F+ +M       D   A +V   + + G+  +   Y+ LI   
Sbjct: 331 SLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGL 390

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            ++G+V     VF +++  G+EP+V TY +LIDG  K+  +   FG YGIM  K   PD 
Sbjct: 391 CRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDV 450

Query: 198 VVFNALITACGQSGAVDRAFDVLAE------------MNAEV------------------ 227
           VV + LI    + G +D A     +             NA +                  
Sbjct: 451 VVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYIL 510

Query: 228 ---HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
              + V PD +T   L+K  A  G++D A  ++  + K        +Y   I+   +  D
Sbjct: 511 MGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRD 570

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
                 ++  M   G+ PD    + LI+     G VE   E+L+E    G+   I++Y++
Sbjct: 571 PATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNT 630

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           ++    + K + KA++L+E +K  + +P   T   LI A C   ++   M + S M   G
Sbjct: 631 MICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERG 690

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
             PN +TYS L+    + ++ E    L  +   D V PN+V +  +I G+C +
Sbjct: 691 PEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKK 743



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 165/386 (42%), Gaps = 29/386 (7%)

Query: 32  YNRLIRQGRISE---CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           Y  ++R+G + +   C  L+  + R+G++D                    EA RFF    
Sbjct: 438 YGIMLRKGHVPDVVVCSMLINGLSRQGMMD--------------------EALRFFFQAV 477

Query: 89  NPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              L+     FN L+  C   K +    ++  L+    +  D   YT L+   A+ G++D
Sbjct: 478 KRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLD 537

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +F +++  G  P+   Y  LIDG  K    A     + +M+S  + PD  ++N LI
Sbjct: 538 EALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLI 597

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G V+   ++L E+    + ++PD +T   ++    +     +A ++++++    
Sbjct: 598 NMFFREGCVENVLELLREIIK--YGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGR 655

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            +     +TI I+   + G  + A  ++  M ++G  P+ +  S LID        E+AF
Sbjct: 656 TQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAF 715

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+ ++     +S  I+SYS L+         ++A   ++      L P V     LI   
Sbjct: 716 ELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGY 775

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTI 410
           C   +L + M +   M   G+ P+ +
Sbjct: 776 CKVGRLAEAMMLYDHMLVNGIMPDDL 801



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/453 (19%), Positives = 181/453 (39%), Gaps = 40/453 (8%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTL 92
           +R G + + I++   M ++G+      Y      +C++ + ++    F +++     P++
Sbjct: 356 VRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSV 415

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T++ L+     S++    F +  ++   G   D  + + LI   ++ G +D     F +
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQ 475

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            V  G+  N + + ALIDGC +  +       Y +M    V PD V +  L+    + G 
Sbjct: 476 AVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGR 535

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A  +  ++  +     PDHI    L+             +++K++    I     +Y
Sbjct: 536 LDEALALFFQLLKK--GFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIY 593

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPD--------------EVF------------ 306
            + IN   + G  E    +  ++ K G+ PD              ++F            
Sbjct: 594 NVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKC 653

Query: 307 ---------LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
                     + LID     G+++ A  I      +G    I++YS L+      +N + 
Sbjct: 654 GRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTES 713

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A ELYE M   ++ P + + + LI  LC    + +            L P+ I Y IL+ 
Sbjct: 714 AFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIR 773

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              +   +   +ML      +G++P+ ++ K +
Sbjct: 774 GYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKAL 806



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 195/465 (41%), Gaps = 43/465 (9%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y+ L+    ++G VD   + F  M   G+  + +    ++D    + ++      Y  M
Sbjct: 142 VYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEM 201

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDV---LAEMNAEVHPVDPDHITIGALMKACA 245
             K +     VFN+ +    + G V++  +    L E       VD + I  G  M    
Sbjct: 202 -CKGLGVYEFVFNSFL----KRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCM---- 252

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
              Q+  A + + M+ +         ++  IN   +    + A S+Y+ M +KG++PD V
Sbjct: 253 -GNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLV 311

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             S LI+    AGK+E    +   A  +G+ + ++ +SS+M A     +  KA+E+Y  M
Sbjct: 312 IYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRM 371

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
               + P V T + LI  LC   ++ +   V   +   GL P+ +TYS L+    + +++
Sbjct: 372 LKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENL 431

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR-------------YEKARTLNEHVLSFN 472
             G  L       G +P++V+   +I   SR+              ++  TLN ++  FN
Sbjct: 432 RDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYL--FN 489

Query: 473 SGRPQ-IENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVS 531
           +        K T   L +Y    +   IP V   + ++  L        + RL E L + 
Sbjct: 490 ALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAE------QGRLDEALALF 543

Query: 532 ADALKRSN------LCSLIDGF-GEYDP-RAFSLLEEAASFGIVP 568
              LK+         C+LIDGF  + DP     + +   S GI P
Sbjct: 544 FQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFP 588



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 37/278 (13%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +  +A+   F+  K   +P    +  L+      +D     Q+ +L+Q  G+  D  +Y 
Sbjct: 535 RLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYN 594

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            LI    + G V+ + E+  E++  G+EP++ TY  +I G       +KA   + +++  
Sbjct: 595 VLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCG 654

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
             +P+ + F  LI A  + G +D A  + + M  E  P +P+ +T   L+         +
Sbjct: 655 RTQPNAITFTILIDAYCKDGRMDDAMLIFSSM-LERGP-EPNILTYSCLIDGYFKTENTE 712

Query: 252 RAREVY-KM--------IHKYNI-------KGTPEVYTIAINCC---------------- 279
            A E+Y KM        I  Y+I       KG  E  ++A  C                 
Sbjct: 713 SAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILI 772

Query: 280 ---SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
               + G    A  +YD M   G++PD++   AL ++ 
Sbjct: 773 RGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEYG 810


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 204/436 (46%), Gaps = 11/436 (2%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D      +YN +I      GR+ E   +L++ME   L       +     +CK++K ++E
Sbjct: 117 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK-LEE 175

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A++ F+       NP   T+  L+         + A+++   + +AG  A+  +YT+LI 
Sbjct: 176 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 235

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
                G+ +   ++F E++  G +P++      +D   KAG+V K    +  +RS    P
Sbjct: 236 NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 295

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D   ++ LI    ++G      ++   M  +   +D       A++     +G+V +A E
Sbjct: 296 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR--AYNAVVDGFCKSGKVHKAYE 353

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + + + +  ++ T   Y   ++  ++    + A  ++++   KG+  + V  S+LID  G
Sbjct: 354 ILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFG 413

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+++ A+ IL+E   +G++  + +++SL+ A   A+   +AL  ++ MK +K  P   
Sbjct: 414 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTY 473

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T + LI  LC   +  K      DM+  GL PN +TY+ ++    +  ++     L  + 
Sbjct: 474 TYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERF 533

Query: 436 KEDGVIPNLVMFKCII 451
           K +G IP+   F  +I
Sbjct: 534 KANGGIPDAASFNALI 549



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 200/464 (43%), Gaps = 45/464 (9%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN +I      GR  +   LLE +  +G +     +++    + K +K + EA   F+
Sbjct: 54  YAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRK-VDEALSLFE 112

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P  ST+N+++ +       E A+++L  ++ A L  +      ++    K+ K
Sbjct: 113 VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK 172

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           ++  +++F      G  P+  TY +LIDG  K GQV +A+  +  M       + VV+ +
Sbjct: 173 LEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTS 232

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI      G  +    +  E+        PD   +   M     AG+V++ R +++ I  
Sbjct: 233 LIRNFFIHGRKEDGHKIFKELIR--RGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRS 290

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           Y        Y+I I+  ++ G      +++  M ++G   D    +A++D    +GKV  
Sbjct: 291 YGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHK 350

Query: 323 AFEIL-----------------------------------QEAKNQGISVGIISYSSLMG 347
           A+EIL                                   +EAK++GI + ++ YSSL+ 
Sbjct: 351 AYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLID 410

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                    +A  + E M    L P V T N+L+ AL   +++ + +     MK +   P
Sbjct: 411 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPP 470

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           NT TYSIL+    R        +     ++ G++PN+V +  +I
Sbjct: 471 NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 514



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 167/344 (48%), Gaps = 22/344 (6%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKG------LLD--MDKVYHARFFNVCKSQKAIKE 79
           Y  LIR     GR  +   + +++ R+G      LL+  MD V+ A      +  + I E
Sbjct: 230 YTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKA---GEVEKGRMIFE 286

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             R +  +P+  + ++++L+     +  +     +   +++ G   D + Y  ++    K
Sbjct: 287 DIRSYGFLPD--VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCK 344

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           SGKV   +E+  EM    ++P V TYGA++DG AK  ++ +A+  +   +SK ++ + V+
Sbjct: 345 SGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVL 404

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +++LI   G+ G +D A+ +L EM  +   + P+  T  +L+ A   A +++ A   ++ 
Sbjct: 405 YSSLIDGFGKVGRIDEAYLILEEMMKK--GLTPNVYTWNSLLDALVKAEEINEALVCFQS 462

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +         Y+I IN   +   +  A   + DM K+G++P+ V  + +I      G 
Sbjct: 463 MKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGN 522

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
           +  A+ + +  K  G      S+++L+   SNA    +A+E Y+
Sbjct: 523 ITDAYSLFERFKANGGIPDAASFNALIEGMSNA---NRAMEAYQ 563



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/464 (20%), Positives = 193/464 (41%), Gaps = 32/464 (6%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A++    ++  GLK D   YT++I    K+G++    E+F +M      P  + Y  +I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G   AG+   A+     +R +   P  V FN+++T  G+   VD A  +   M  +    
Sbjct: 62  GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKD---A 118

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
           +P+  T   ++      G+V+ A  +   +   ++        I ++   +    E A  
Sbjct: 119 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYK 178

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +++  +++G  PD V   +LID  G  G+V+ A+ + ++  + G +   + Y+SL+    
Sbjct: 179 IFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFF 238

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
                +   ++++ +     KP ++ +N  +  +    ++ K   +  D++S G  P+  
Sbjct: 239 IHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVR 298

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV 468
           +YSIL+    +         +    K+ G   +   +  ++ G C S +  KA  + E +
Sbjct: 299 SYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEM 358

Query: 469 LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
                                 +E  V  T+ T   +   L  +     A +     ++ 
Sbjct: 359 ----------------------KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSK 396

Query: 529 GVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCV 570
           G+  + +  S   SLIDGFG+      A+ +LEE    G+ P V
Sbjct: 397 GIELNVVLYS---SLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 437



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 5/150 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           GRI E   +LE+M +KGL      +++    + K+++ I EA   F+ +      P   T
Sbjct: 416 GRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEE-INEALVCFQSMKEMKCPPNTYT 474

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +++L++     +    AF   + +Q+ GL  +   YTT+I+  AK G +   + +F    
Sbjct: 475 YSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 534

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
             G  P+  ++ ALI+G + A +  +A+ A
Sbjct: 535 ANGGIPDAASFNALIEGMSNANRAMEAYQA 564


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 186/430 (43%), Gaps = 48/430 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+L TF+ LM      +D+E    +L  ++  GLK +   YT  I    ++G++D    +
Sbjct: 227 PSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRI 286

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M + G  P+V TY  LID    AG++  A   +  M++ + KPDRV +  ++     
Sbjct: 287 MKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSD 346

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G + R  +  +EM A+ +   PD IT   L+ A   AG +D A  +  ++ K  +    
Sbjct: 347 CGDLGRVKEFWSEMEADGYA--PDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNL 404

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I+   +    + A  ++++M   GV+P        IDF G +G+ + A E  ++
Sbjct: 405 HTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEK 464

Query: 330 AKNQGISVGI-----------------------------------ISYSSLMGACSNAKN 354
            K +GI+  I                                   ++Y+ +M   S A  
Sbjct: 465 MKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQ 524

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             +A+EL   M   + +P +  +N+LI  L    ++ +  ++   +K + L P  +TY+ 
Sbjct: 525 VDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNT 584

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE---------KARTLN 465
           L+    ++  V+  + L +    +G  PN + F  I+    +  E         K  T+N
Sbjct: 585 LIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMN 644

Query: 466 --EHVLSFNS 473
               VL+FN+
Sbjct: 645 CMPDVLTFNT 654



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 163/333 (48%), Gaps = 2/333 (0%)

Query: 115  LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
            +R  +E G+K   + Y  LI         +  + +F EM NAG  P+V TY  L+D   K
Sbjct: 778  IRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGK 837

Query: 175  AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
            +G++ + F  Y  M   + KP+ +  N +I    +S ++D+A D+  ++ +      P  
Sbjct: 838  SGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVS--GDFSPTP 895

Query: 235  ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
             T G L+     +G+++ A+E+++ +  Y  +    +Y I IN   +TGD   AC ++  
Sbjct: 896  CTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKR 955

Query: 295  MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
            M ++G+ PD    ++L+     AG+V+ A    ++ K  G+ +  I+Y+ ++     +  
Sbjct: 956  MVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHR 1015

Query: 355  WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             ++AL LY+ M+S  + P + T N+LI  L     + +  ++  +++ +GL PN  TY+ 
Sbjct: 1016 IEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNA 1075

Query: 415  LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            L+       + +    +  +    G  PN   F
Sbjct: 1076 LIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTF 1108



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 114/452 (25%), Positives = 205/452 (45%), Gaps = 34/452 (7%)

Query: 27  EQLHSYNRLIRQG------------------RISECI-DLLEDMERKGLLDMDKVY-HAR 66
           E L  Y R++ +G                  R +E +  LLE+ME  GL     +Y +  
Sbjct: 212 EALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGL--KPNIYTYTI 269

Query: 67  FFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
              V      I EA R  K + +    P + T+ +L+    ++   + A ++   ++ + 
Sbjct: 270 CIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASS 329

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
            K D   Y T++   +  G +  + E + EM   G  P+V T+  L++   KAG + +AF
Sbjct: 330 HKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAF 389

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
               +MR + V P+   +N LI+   +   +D A D+   M  E   V P   T    + 
Sbjct: 390 HLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNM--ETLGVVPTAYTYILFID 447

Query: 243 ACANAGQVDRAREVYKMIHKYNIKG-TPEVY--TIAINCCSQTGDWEFACSVYDDMTKKG 299
               +G+ D+A E ++   K  I+G  P +     ++   ++ G    A  +++ +   G
Sbjct: 448 FYGKSGRSDKALETFE---KMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNG 504

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + PD V  + ++     AG+V+ A E+L +         II  +SL+     A    +A 
Sbjct: 505 LAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAW 564

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           +++  +K +KL PTV T N LI  L    Q+ + ME+ + M   G  PNTIT++ +L   
Sbjct: 565 KMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCL 624

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            + D+V++ L +L +      +P+++ F  II
Sbjct: 625 CKNDEVDLALKMLYKMTTMNCMPDVLTFNTII 656



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 180/406 (44%), Gaps = 5/406 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L R GRI E   +++ ME  G       Y      +C + K       F K+  +   P 
Sbjct: 274 LGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPD 333

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+  ++   +   D     +    ++  G   D   +T L+    K+G +D  F +  
Sbjct: 334 RVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLD 393

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G+ PN+HTY  LI G  +  ++  A   +  M +  V P    +   I   G+SG
Sbjct: 394 VMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSG 453

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             D+A +   +M  ++  + P+ +   A + + A  G++  A+ ++  +    +      
Sbjct: 454 RSDKALETFEKM--KIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVT 511

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + + C S+ G  + A  +  DM++    PD + +++LI+    AG+V+ A+++    K
Sbjct: 512 YNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLK 571

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +  ++  +++Y++L+         Q+A+EL+  M      P   T N ++  LC  D++ 
Sbjct: 572 DMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVD 631

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             +++L  M ++   P+ +T++ ++     +  V   + L  Q K+
Sbjct: 632 LALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKK 677



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 169/350 (48%), Gaps = 6/350 (1%)

Query: 70   VCKSQKAI--KEAF-RFFK-LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +CK ++A+  +  F RF K L   PTL ++N L+       + E A+ +   ++ AG   
Sbjct: 764  LCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAP 823

Query: 126  DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
            D   Y  L+    KSGK++ +FE++ +M+ +  +PN  T+  +I    K+  + KA   +
Sbjct: 824  DVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLF 883

Query: 186  GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
              + S +  P    +  L+    +SG ++ A ++  EM    +   P++     L+    
Sbjct: 884  YDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVD--YGCRPNNAIYNILINGFG 941

Query: 246  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
              G V+ A E++K + +  I+   + YT  + C  + G  + A   ++ + + G+  D +
Sbjct: 942  KTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSI 1001

Query: 306  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
              + +ID  G + ++E A  +  E +++GI+  + +Y+SL+     A   ++A +LYE +
Sbjct: 1002 AYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEEL 1061

Query: 366  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            + I L+P V T NALI              V   M   G  PNT T++ L
Sbjct: 1062 QFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 167/358 (46%), Gaps = 2/358 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++N L+ +   S     A ++ R +   GLK   K ++ L+    K    + +  +  EM
Sbjct: 196 SYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEM 255

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            + G++PN++TY   I    +AG++ +A      M      PD V +  LI A   +G +
Sbjct: 256 ESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKL 315

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A ++  +M A  H   PD +T   ++   ++ G + R +E +  +           +T
Sbjct: 316 DDAMELFVKMKASSHK--PDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFT 373

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I +N   + G+ + A  + D M K+GV+P+    + LI       +++ A ++    +  
Sbjct: 374 ILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETL 433

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+     +Y   +     +    KALE +E MK   + P +   NA + +L +  +L + 
Sbjct: 434 GVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREA 493

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             + + +KS GL P+++TY++++    +   V+  + LLS   E+   P++++   +I
Sbjct: 494 KVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLI 551



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 159/366 (43%), Gaps = 11/366 (3%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           ++EAG   +   Y  LI    +SG      E++  MV  G++P++ T+ AL+    K   
Sbjct: 185 MREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRD 244

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
                     M S  +KP+   +   I   G++G +D A  ++  M  E     PD +T 
Sbjct: 245 TETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRM--EDDGCGPDVVTY 302

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+ A   AG++D A E++  +   + K     Y   ++  S  GD       + +M  
Sbjct: 303 TVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEA 362

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G  PD +  + L++    AG ++ AF +L   + QG+   + +Y++L+           
Sbjct: 363 DGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDD 422

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           AL+L+ +M+++ + PT  T    I       +  K +E    MK  G+ PN +  +  L 
Sbjct: 423 ALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLY 482

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV-----LSFN 472
           +      +    ++ ++ K +G+ P+ V +     M  + Y KA  ++E +     +S N
Sbjct: 483 SLAEMGRLREAKVIFNRLKSNGLAPDSVTYN----MMMKCYSKAGQVDEAIELLSDMSEN 538

Query: 473 SGRPQI 478
              P I
Sbjct: 539 QCEPDI 544



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 158/379 (41%), Gaps = 35/379 (9%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           YA DV       N L + G I E   LL+ M ++G+L                       
Sbjct: 365 YAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVL----------------------- 401

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P L T+N L+S        + A  +   ++  G+      Y   I    KS
Sbjct: 402 ---------PNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKS 452

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+ D   E F +M   GI PN+    A +   A+ G++ +A   +  ++S  + PD V +
Sbjct: 453 GRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTY 512

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N ++    ++G VD A ++L++M+   +  +PD I I +L+     AG+VD A +++  +
Sbjct: 513 NMMMKCYSKAGQVDEAIELLSDMSE--NQCEPDIIVINSLINTLYKAGRVDEAWKMFCRL 570

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +  T   Y   I    + G  + A  ++  MT  G  P+ +  + ++D      +V
Sbjct: 571 KDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEV 630

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A ++L +         ++++++++      K    A+ L+  MK + L P   T+  L
Sbjct: 631 DLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKM-LTPDCVTLCTL 689

Query: 381 ITALCDGDQLPKTMEVLSD 399
           +  +     +    ++  D
Sbjct: 690 LPGVVKNGLMEDAFKIAED 708



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 7/372 (1%)

Query: 79  EAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +AF +F  V        T  T N ++ +    +       V  L+Q   +K D   Y  +
Sbjct: 106 DAFSYFNSVAEMPFVVHTTETCNHMLEILRIHRRVGDMVVVFNLMQNQIIKRDLNTYLII 165

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
                  G +      F +M  AG   N ++Y  LI    ++G   +A   Y  M  + +
Sbjct: 166 FKGLFIRGGLRQTPFAFGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGL 225

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KP    F+AL+ A G+    +    +L EM  E   + P+  T    ++    AG++D A
Sbjct: 226 KPSLKTFSALMVATGKRRDTETVKSLLEEM--ESLGLKPNIYTYTICIRVLGRAGRIDEA 283

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             + K +           YT+ I+     G  + A  ++  M      PD V    ++D 
Sbjct: 284 CRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDK 343

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G +    E   E +  G +  +I+++ L+ A   A N  +A  L + M+   + P 
Sbjct: 344 FSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPN 403

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + T N LI+ L   ++L   +++ ++M++LG+ P   TY + +    +    +  L    
Sbjct: 404 LHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFE 463

Query: 434 QAKEDGVIPNLV 445
           + K  G+ PN+V
Sbjct: 464 KMKIRGIAPNIV 475



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/465 (20%), Positives = 188/465 (40%), Gaps = 45/465 (9%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +++     G++ E I+LL DM      + D +      N       + EA++ F  
Sbjct: 511 TYNMMMKCYSKAGQVDEAIELLSDMSENQC-EPDIIVINSLINTLYKAGRVDEAWKMFCR 569

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    PT+ T+N L++        + A ++   +   G   +   + T++    K+ +
Sbjct: 570 LKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDE 629

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD   ++ ++M      P+V T+  +I G     +V+ A   +  M+ K + PD V    
Sbjct: 630 VDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMK-KMLTPDCVTLCT 688

Query: 203 LITACGQSGAVDRAFDV------------------------LAEMNAEVHPVDPDHITIG 238
           L+    ++G ++ AF +                        L +   E   +  D +  G
Sbjct: 689 LLPGVVKNGLMEDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKTILFGDRLVCG 748

Query: 239 ----------ALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
                      ++K      Q   A+ V+ +   +  +K T E Y   I       + E 
Sbjct: 749 RVCKDGSVLMPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEM 808

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A +++ +M   G  PD    + L+D  G +GK+   FE+ ++          I+++ ++ 
Sbjct: 809 AWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIA 868

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
               + +  KAL+L+  + S    PT  T   L+  L    +L +  E+  +M   G  P
Sbjct: 869 NLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRP 928

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           N   Y+IL+    +  DV     L  +   +G+ P+L  +  ++G
Sbjct: 929 NNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVG 973


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 201/412 (48%), Gaps = 15/412 (3%)

Query: 40   RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
            RISE + L++ M   G     +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 780  RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTY 838

Query: 96   NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
             ++++      D++ AF +L  +++  L+    +Y T+I    K   +D    +F EM  
Sbjct: 839  GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 898

Query: 156  AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
             GI PNV TY +LI      G+ + A      M  + + PD   F+ALI A  + G +  
Sbjct: 899  KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 958

Query: 216  AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEV--Y 272
            A  +  EM      +DP  +T  +L+       ++D A+++++ M+ K+     P+V  Y
Sbjct: 959  AEKLYDEMVK--RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF---PDVVTY 1013

Query: 273  TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
               I    +    E    V+ +M+++G++ + V  + LI     AG  + A EI +E  +
Sbjct: 1014 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 1073

Query: 333  QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+   I++Y++L+ G C N K  +KA+ ++E+++  K++PT+ T N +I  +C   ++ 
Sbjct: 1074 DGVPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 1132

Query: 392  KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
               ++  ++   G+ P+ + Y+ ++    RK   E    L  + KEDG +PN
Sbjct: 1133 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 1184



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 173/377 (45%), Gaps = 4/377 (1%)

Query: 94   TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
            T+++L++          A  VL  + + G + +    ++L+     S ++     +  +M
Sbjct: 732  TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 791

Query: 154  VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               G +PN  T+  LI G     + ++A      M +K  +PD V +  ++    + G  
Sbjct: 792  FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 851

Query: 214  DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            D AF++L +M  E   ++P  +    ++        +D A  ++K +    I+     Y+
Sbjct: 852  DLAFNLLNKM--EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYS 909

Query: 274  IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
              I+C    G W  A  +  DM ++ + PD    SALID     GK+  A ++  E   +
Sbjct: 910  SLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKR 969

Query: 334  GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
             I   I++YSSL+          +A +++E M S    P V T N LI   C   ++ + 
Sbjct: 970  SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEG 1029

Query: 394  MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
            MEV  +M   GL  NT+TY+IL+    +  D ++   +  +   DGV PN++ +  ++ G
Sbjct: 1030 MEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 1089

Query: 453  MCSR-RYEKARTLNEHV 468
            +C   + EKA  + E++
Sbjct: 1090 LCKNGKLEKAMVVFEYL 1106



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 202/438 (46%), Gaps = 10/438 (2%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKE 79
           D+ E+L S  RL R  ++++ IDL  DM +      ++D +++  A    + K    I  
Sbjct: 154 DLRERL-SKTRL-RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSA-IVKLKKYDVVISL 210

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             +   L     L TFN++++          A  +L  + + G + D     +L+    +
Sbjct: 211 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 270

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
             +V     +  +MV  G +P++  Y A+ID   K  +V  AF  +  +  K ++P+ V 
Sbjct: 271 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT 330

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           + AL+     S     A  +L++M  +   + P+ IT  AL+ A    G+V  A+E+++ 
Sbjct: 331 YTALVNGLCNSSRWSDAARLLSDMIKK--KITPNVITYSALLDAFVKNGKVLEAKELFEE 388

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + + +I      Y+  IN        + A  ++D M  KG + D V  + LI+    A +
Sbjct: 389 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKR 448

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           VE   ++ +E   +G+    ++Y++L+     A +  KA E +  M    + P + T N 
Sbjct: 449 VEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNI 508

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           L+  LCD  +L K + +  DM+   +  + +TY+ ++    +   VE    L       G
Sbjct: 509 LLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 568

Query: 440 VIPNLVMFKCII-GMCSR 456
           + P++V +  ++ G+C++
Sbjct: 569 LKPDIVTYTTMMSGLCTK 586



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 172/363 (47%), Gaps = 4/363 (1%)

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  KL   P   T   L++  C  ++ S+    V ++V E G K D   Y  +I +  K+
Sbjct: 248 KMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-EIGYKPDIVAYNAIIDSLCKT 306

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            +V+  F+ F E+   GI PNV TY AL++G   + + + A      M  K + P+ + +
Sbjct: 307 KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITY 366

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +AL+ A  ++G V  A ++  EM      +DPD +T  +L+       ++D A +++ ++
Sbjct: 367 SALLDAFVKNGKVLEAKELFEEMVR--MSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 424

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                      Y   IN   +    E    ++ +M+++G++ + V  + LI     AG V
Sbjct: 425 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 484

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A E   +    GIS  I +Y+ L+G   +    +KAL ++E M+  ++   + T   +
Sbjct: 485 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 544

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I  +C   ++ +   +   +   GL P+ +TY+ ++     K  +     L ++ K++G+
Sbjct: 545 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 604

Query: 441 IPN 443
           + N
Sbjct: 605 MKN 607



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 117/511 (22%), Positives = 229/511 (44%), Gaps = 63/511 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   R+ R+S+ + L++ M   G       Y+A   ++CK+++ + +AF FFK +     
Sbjct: 266 NGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKR-VNDAFDFFKEIERKGI 324

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P + T+  L++ +C SS+ S+ A ++L  + +  +  +   Y+ L+    K+GKV    
Sbjct: 325 RPNVVTYTALVNGLCNSSRWSDAA-RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 383

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E+F EMV   I+P++ TY +LI+G     ++ +A   + +M SK    D V +N LI   
Sbjct: 384 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 443

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++  V+    +  EM+     +  + +T   L++    AG VD+A+E +  +  + I  
Sbjct: 444 CKAKRVEDGMKLFREMSQ--RGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI-- 499

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +P+++T  I                              L  L D     G++E A  I 
Sbjct: 500 SPDIWTYNI-----------------------------LLGGLCD----NGELEKALVIF 526

Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           ++ + + + + I++Y++++ G C   K  ++A  L+  +    LKP + T   +++ LC 
Sbjct: 527 EDMQKREMDLDIVTYTTVIRGMCKTGK-VEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCT 585

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L +   + + MK  GL  N  T S          D+ +   L+ +    G  P+L+ 
Sbjct: 586 KGLLHEVEALYTKMKQEGLMKNDCTLS--------DGDITLSAELIKKMLSCGYAPSLLK 637

Query: 447 FKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL----ALMVYREAIVAGTIPTV 502
                G+C +     R  +    S++       N  + L    A+ ++ E + +   P++
Sbjct: 638 -DIKSGVCKKALSLLRAFSGKT-SYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSI 695

Query: 503 EVVSKVLGCLQLPYNADIRERL---VENLGV 530
              SK+L  +      D+   L   ++NLG+
Sbjct: 696 IEFSKLLSAIAKMNKFDVVISLGEQMQNLGI 726



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 125/555 (22%), Positives = 219/555 (39%), Gaps = 89/555 (16%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---- 90
            ++ G++ E  +L E+M R  + D D V ++   N       I EA + F L+ +     
Sbjct: 373 FVKNGKVLEAKELFEEMVRMSI-DPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLA 431

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + ++N L++    +K  E   ++ R + + GL ++   Y TLI    ++G VD   E F
Sbjct: 432 DVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFF 491

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M   GI P++ TY  L+ G    G++ KA   +  M+ + +  D V +  +I    ++
Sbjct: 492 SQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT 551

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G V+ A+ +   ++  +  + PD +T   +M      G +     +Y  + +  +     
Sbjct: 552 GKVEEAWSLFCSLS--LKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL----- 604

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----------EVFLSALIDFAGHAG-- 318
              +  +C    GD   +  +   M   G  P           +  LS L  F+G     
Sbjct: 605 ---MKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYD 661

Query: 319 -------------KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
                        K++ A  +  E         II +S L+ A +    +   + L E M
Sbjct: 662 YREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQM 721

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDD 424
           +++ +     T + LI   C   QLP  + VL  M  LG  PN +T S LL   C  K  
Sbjct: 722 QNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRI 781

Query: 425 VEV------------------------GLMLLSQAKE----------DGVIPNLVMFKCI 450
            E                         GL L ++A E           G  P+LV +  +
Sbjct: 782 SEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVV 841

Query: 451 I-GMCSR-----------RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAG 497
           + G+C R           + E+ + L   VL +N+    + + K    AL +++E    G
Sbjct: 842 VNGLCKRGDTDLAFNLLNKMEQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKG 900

Query: 498 TIPTVEVVSKVLGCL 512
             P V   S ++ CL
Sbjct: 901 IRPNVVTYSSLISCL 915



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 9/388 (2%)

Query: 33   NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
            N L ++G      +LL  ME+  L     +Y+     +CK  K + +A   FK +     
Sbjct: 843  NGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK-YKHMDDALNLFKEMETKGI 901

Query: 90   -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             P + T++ L+S   +      A ++L  + E  +  D   ++ LI    K GK+    +
Sbjct: 902  RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 961

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            ++ EMV   I+P++ TY +LI+G     ++ +A   +  M SK+  PD V +N LI    
Sbjct: 962  LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFC 1021

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +   V+   +V  EM+     +  + +T   L++    AG  D A+E++K +    +   
Sbjct: 1022 KYKRVEEGMEVFREMSQ--RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 1079

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
               Y   ++   + G  E A  V++ + +  + P     + +I+    AGKVE  +++  
Sbjct: 1080 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 1139

Query: 329  EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 387
                +G+   +++Y++++       + ++A  L++ MK     P     N LI A L DG
Sbjct: 1140 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 1199

Query: 388  DQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            D+   + E++ +M+S G   +  T  ++
Sbjct: 1200 DR-EASAELIKEMRSCGFAGDASTIGLV 1226



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 105/501 (20%), Positives = 208/501 (41%), Gaps = 66/501 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFR- 82
           SYN LI    +  R+ + + L  +M ++GL+     Y+     FF      KA +E F  
Sbjct: 435 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKA-QEFFSQ 493

Query: 83  --FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             FF + P+  + T+N+L+     + + E A  +   +Q+  +  D   YTT+I    K+
Sbjct: 494 MDFFGISPD--IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT 551

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPDRVV 199
           GKV+  + +F  +   G++P++ TY  ++ G    G + +    Y  M+ + + K D  +
Sbjct: 552 GKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 611

Query: 200 FNALIT----------ACG---------QSGAVDRAFDVLAEMN---------------- 224
            +  IT          +CG         +SG   +A  +L   +                
Sbjct: 612 SDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGL 671

Query: 225 AEVHPVD--------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           +E+   D              P  I    L+ A A   + D    + + +    I     
Sbjct: 672 SELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHY 731

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y+I INC  +      A +V   M K G  P+ V LS+L++   H+ ++  A  ++ + 
Sbjct: 732 TYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 791

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
              G     +++++L+          +A+ L + M +   +P + T   ++  LC     
Sbjct: 792 FVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDT 851

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                +L+ M+   L P  + Y+ ++    +   ++  L L  + +  G+ PN+V +  +
Sbjct: 852 DLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSL 911

Query: 451 IG-MCS--RRYEKARTLNEHV 468
           I  +C+  R  + +R L++ +
Sbjct: 912 ISCLCNYGRWSDASRLLSDMI 932


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 204/439 (46%), Gaps = 39/439 (8%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+  +++YN L+R    +GR+ E + ++ DM   G               C       
Sbjct: 146 HGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAG---------------CA------ 184

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTC 137
                      P   T+N L++    + + +GA +V+ L++E G  K +   + +++   
Sbjct: 185 -----------PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K+G+++   +VF EMV  G+ P+V +Y  L+ G  K G + ++   +  M  + + PD 
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V F +LI A  ++G +++A  ++A+M      +  + +T  AL+      G +D A    
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRER--GLRMNEVTFTALIDGFCKKGFLDDALLAV 351

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + + K  I+ +   Y   IN   + G  + A  +  +M  K V PD V  S +I      
Sbjct: 352 EEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKV 411

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G +++AF++ Q+   +G+    I+YSSL+      K    A EL+E+M  + ++P   T 
Sbjct: 412 GNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTY 471

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LI   C    + K + +  +M   G+ P+ +TYS+L+    +    +    LL +   
Sbjct: 472 TTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYH 531

Query: 438 DGVIPNLVMFKCIIGMCSR 456
           +  +P+ + +  ++  CS+
Sbjct: 532 EDPVPDNIKYDALMLCCSK 550



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 188/383 (49%), Gaps = 6/383 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N+L+    +    E A  V+  ++ AG   +   Y TL+    ++G++D    V
Sbjct: 150 PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 209

Query: 150 FHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              M   G  +PN+ T+ ++++G  KAG++  A   +  M  + + PD V +N L++   
Sbjct: 210 VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC 269

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  +  V +EM      + PD +T  +L+ A   AG +++A  +   + +  ++  
Sbjct: 270 KVGCLHESLAVFSEMTQR--GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +T  I+   + G  + A    ++M K G+ P  V  +ALI+     G+++ A E+++
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E + + +   +++YS+++       N   A +L + M    + P   T ++LI  LC+  
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L    E+  +M  LG+ P+  TY+ L+    ++ +VE  L L  +    GV+P++V + 
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507

Query: 449 CIIGMCSRRYEKARTLNEHVLSF 471
            +I   S+    ART   H L F
Sbjct: 508 VLINGLSK---SARTKEAHRLLF 527



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 185/374 (49%), Gaps = 17/374 (4%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+  G+ PNV+TY  L+      G++ +A G  G MR     P+ V +N L+ A  ++G 
Sbjct: 143 MLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 202

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A  V++ M  E +   P+ +T  +++     AG+++ AR+V+  + +  +      Y
Sbjct: 203 LDGAERVVSLMREEGN-AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSY 261

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              ++   + G    + +V+ +MT++G++PD V  ++LI     AG +E A  ++ + + 
Sbjct: 262 NTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE 321

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G+ +  +++++L+           AL   E M+   ++P+V   NALI   C   ++  
Sbjct: 322 RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDL 381

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
             E++ +M++  + P+ +TYS ++    +  +++    L  +  + GV+P+ + +  +I 
Sbjct: 382 ARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIR 441

Query: 452 GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGT 498
           G+C  +R   A  L E++L    G    E  +T+L            AL ++ E I  G 
Sbjct: 442 GLCEEKRLNDACELFENMLQL--GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 499

Query: 499 IPTVEVVSKVLGCL 512
           +P V   S ++  L
Sbjct: 500 LPDVVTYSVLINGL 513



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 186/404 (46%), Gaps = 23/404 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + GR+     + ++M R+GL      Y+      CK    + E+   F  +     
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKV-GCLHESLAVFSEMTQRGL 289

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + TF  L+     + + E A  ++  ++E GL+ +   +T LI    K G +D    
Sbjct: 290 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 349

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EM   GI+P+V  Y ALI+G  K G++  A      M +K VKPD V ++ +I+   
Sbjct: 350 AVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +D AF +  +M  +   V PD IT  +L++      +++ A E+++ + +  ++  
Sbjct: 410 KVGNLDSAFQLNQKMLKK--GVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 467

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  I+   + G+ E A S++D+M +KGV+PD V  S LI+    + + + A  +L 
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 527

Query: 329 EAKNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPT 373
           +  ++      I Y +LM  CS A+                 ++A ++Y+ M     K  
Sbjct: 528 KLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLD 587

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
            S  + LI   C G  + K +     M   G  PN+ T +I LV
Sbjct: 588 GSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNS-TSTISLV 630



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 20/311 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAFRFFKLVP-NPTLS 93
           ++G + + +  +E+M + G+      Y+A     CK  +    +E  R  +     P + 
Sbjct: 340 KKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV 399

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ ++S      + + AFQ+ + + + G+  D   Y++LI    +  +++   E+F  M
Sbjct: 400 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 459

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +  G++P+  TY  LIDG  K G V KA   +  M  K V PD V ++ LI    +S   
Sbjct: 460 LQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSART 519

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---------------GQVDRAREVYK 258
             A  +L ++  E  PV PD+I   ALM  C+ A               G +  A +VY+
Sbjct: 520 KEAHRLLFKLYHE-DPV-PDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQ 577

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +   N K    VY+I I+   + G+   A S +  M + G  P+     +L+      G
Sbjct: 578 SMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEG 637

Query: 319 KVEAAFEILQE 329
            V  A   +Q+
Sbjct: 638 MVVEADNAIQD 648


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 198/417 (47%), Gaps = 12/417 (2%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNML 98
           I + + L ++M  KGL    K Y      +CK++K         K+  N    + T+ M+
Sbjct: 93  IPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMI 152

Query: 99  M-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           + S+C     +E A  +   +  AG+  D  +Y++L+    + G++    E F EM   G
Sbjct: 153 IDSLCKDGMTTE-ALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 211

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I  +V+TY +LI G ++AG   +      +M  +   PD   F  LI    + G V  A 
Sbjct: 212 ISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQ 271

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            +L  M+ +    +PD +T   LM      GQ++ A ++++ +    IK     Y I IN
Sbjct: 272 QILELMHHKGK--EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILIN 329

Query: 278 --CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
             C  Q  D  F   ++++M  KG+ P  V  + LI     +G+V  A ++  E +  G 
Sbjct: 330 GYCKDQKIDEAF--RLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQ 387

Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
            + + +Y  L+ G C N  + ++A++L++ +K  + KP +   + L+  +C   +L +  
Sbjct: 388 FLKLSTYCVLLDGLCKNG-HLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAW 446

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   ++   GL P+TI Y+IL+     K  +   + LL Q +E G +P+ + F  II
Sbjct: 447 KQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVII 503



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 182/412 (44%), Gaps = 7/412 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           + L + G  +E +D+  +M   G+L    VY +    +C+  + +KEA  FFK +    +
Sbjct: 154 DSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGR-LKEALEFFKEMEGRGI 212

Query: 93  S----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           S    T+N L+   + +   +     L L+ + G   D   +T LI    K GKV    +
Sbjct: 213 SADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQ 272

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M + G EP++ TY  L++G    GQ+  A   +  +  + +K +   +N LI    
Sbjct: 273 ILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYC 332

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +D AF +  EM  +   + P  +T   L+ A   +G+V  A++++  +        
Sbjct: 333 KDQKIDEAFRLFEEMRPK--GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLK 390

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y + ++   + G  E A  ++  + K    P+    S L+D    AGK+E A++   
Sbjct: 391 LSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFD 450

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E    G+    I+Y+ L+    N     +A++L   M+     P   T N +I  L   +
Sbjct: 451 EISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLKEN 510

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           ++ + +++L +M++    P+    S+LL            L+ L  A + GV
Sbjct: 511 EIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGV 562



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 157/361 (43%), Gaps = 8/361 (2%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G + D    TTL+        +    ++F EM   G+  +  TYG LI+G  KA +   A
Sbjct: 72  GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLA 131

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +  M+  N K D   +  +I +  + G    A D+ +EM      + PD +   +LM
Sbjct: 132 IKLHEKMKG-NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGA--GILPDVVVYSSLM 188

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
                 G++  A E +K +    I      Y   I+  S+ G W+      + M  +G  
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFS 248

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD    + LID     GKV  A +IL+   ++G    I++Y++LM         + A +L
Sbjct: 249 PDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKL 308

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           +E +    +K  V + N LI   C   ++ +   +  +M+  GL P+T+TY+ L+ A  +
Sbjct: 309 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQ 368

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII--GMCSRRY-EKARTLNEHVLSFNSGRPQI 478
              V     L  + +  G    L  + C++  G+C   + E+A  L + +      +P I
Sbjct: 369 SGRVRTAQKLFVEMQTCGQFLKLSTY-CVLLDGLCKNGHLEEAIDLFQSIKK-TEHKPNI 426

Query: 479 E 479
           E
Sbjct: 427 E 427



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 143/358 (39%), Gaps = 28/358 (7%)

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           +  +PD V    L+        +  A  +  EM  +   +  D  T G L+     A + 
Sbjct: 71  RGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEK--GLFGDAKTYGILINGLCKARKT 128

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
             A ++++ + K N KG    Y + I+   + G    A  ++ +M   G++PD V  S+L
Sbjct: 129 GLAIKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSL 187

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           +D     G+++ A E  +E + +GIS  + +Y+SL+   S A  W++       M     
Sbjct: 188 MDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGF 247

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P   T   LI  LC   ++ +  ++L  M   G  P+ +TY+ L+        +E    
Sbjct: 248 SPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATK 307

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 489
           L     + G+  N+  +  +I G C     K + ++E    F   RP+            
Sbjct: 308 LFESLADRGIKLNVFSYNILINGYC-----KDQKIDEAFRLFEEMRPK------------ 350

Query: 490 YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
                  G  P+    + ++G L         ++L   +      LK S  C L+DG 
Sbjct: 351 -------GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGL 401



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 94/201 (46%), Gaps = 9/201 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN LI    +  +I E   L E+M  KGL      Y+     +C+S + ++ A + F  
Sbjct: 323 SYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGR-VRTAQKLFVE 381

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +        LST+ +L+     +   E A  + + +++   K + ++++ L+    ++GK
Sbjct: 382 MQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGK 441

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           ++  ++ F E+   G+EP+   Y  LI+G    G +++A      M  K   PD + FN 
Sbjct: 442 LEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNV 501

Query: 203 LITACGQSGAVDRAFDVLAEM 223
           +I    +   +  A  +L EM
Sbjct: 502 IIQNLLKENEIHEAIQLLEEM 522


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 145/296 (48%), Gaps = 2/296 (0%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   YTT+I+ C    ++    E+  EM   G+  NVHTY AL++ C KA ++  A   Y
Sbjct: 72  DVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           G +  +   P+ V +N LI   G+ G    A  VL  +  E     P+  T   ++ AC 
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDAL--EDQGTKPEVRTYNTILSACN 189

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            +GQ + A  VY+ +     + T   YT  I+   +TG  E A  ++ DM ++G   + +
Sbjct: 190 RSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVI 249

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             S+LI     AG+ + A E+L E          +++++L+ AC+    W+ A +++E M
Sbjct: 250 TYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQM 309

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            S   KP   +   LI+A   G+Q  + ++ L +M+  G  P+   Y++++ A  R
Sbjct: 310 PSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTR 365



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 137/296 (46%), Gaps = 2/296 (0%)

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           +V+TY  +I  C    Q+ KA      MR   V  +   ++AL+  C ++  ++ A DV 
Sbjct: 72  DVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
            ++  E     P+ +T   L+      G    A +V   +     K     Y   ++ C+
Sbjct: 132 GQLLRE--GCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACN 189

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           ++G  E A  VY+ M   G  P     +ALI   G  GK+E A  I Q+   +G    +I
Sbjct: 190 RSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVI 249

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +YSSL+ AC  A  WQ ALEL + M     KP   T NAL++A   G Q     +V   M
Sbjct: 250 TYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQM 309

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            S G  P+ ++Y+IL+ A +R +     L  L + +  G  P++ ++  +I   +R
Sbjct: 310 PSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTR 365



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 149/313 (47%), Gaps = 9/313 (2%)

Query: 79  EAFRFFKLVP-NPTLS------TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           E F + + +P N  L+      T+  ++S C S +    A +++  ++  G+  +   Y+
Sbjct: 53  ELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYS 112

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            L+  C K+ +++   +V+ +++  G  PN+ TY  LID   K G   +A      +  +
Sbjct: 113 ALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQ 172

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
             KP+   +N +++AC +SG  + A  V   M A+     P   T  AL+ A    G+++
Sbjct: 173 GTKPEVRTYNTILSACNRSGQPEHALRVYERMLAD--GAQPTATTYTALISAYGKTGKIE 230

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A  +++ + +   +     Y+  I+ C + G W+ A  + D+M +    P+ V  +AL+
Sbjct: 231 EALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALL 290

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                 G+ +AA ++ ++  + G     +SY+ L+ A      W +AL+  + M+    +
Sbjct: 291 SACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHR 350

Query: 372 PTVSTMNALITAL 384
           P V   N +I AL
Sbjct: 351 PDVGVYNVVIEAL 363



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 154/317 (48%), Gaps = 14/317 (4%)

Query: 29  LHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF--- 81
           +++Y  +I Q     ++ + ++L+ +M   G++     Y A   NVC     ++ A    
Sbjct: 73  VYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSA-LMNVCIKANELELALDVY 131

Query: 82  -RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +  +    P L T+N+L+ +     + + A QVL  +++ G K + + Y T+++ C +S
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRS 191

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+ +    V+  M+  G +P   TY ALI    K G++ +A   +  M  +  + + + +
Sbjct: 192 GQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVITY 251

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           ++LI+AC ++G    A ++L EM+ +     P+ +T  AL+ ACA  GQ   A++V++ +
Sbjct: 252 SSLISACEKAGRWQLALELLDEMHRD--NCKPNTVTFNALLSACAQGGQWKAAQDVFEQM 309

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                K     Y I I+   +   W  A    D+M  +G  PD    + +I+    +G +
Sbjct: 310 PSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTRSGVL 369

Query: 321 EA---AFEILQEAKNQG 334
            A   A +I Q A  QG
Sbjct: 370 SAQLKAAQIFQAATRQG 386



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 134/303 (44%), Gaps = 12/303 (3%)

Query: 40  RISECIDLLEDM-ERKGLLDMDKVY-HARFFNVCKSQKAIKEAF------RFFKLVPNPT 91
           R SE  D L  + +   L  +  VY +    + C S + +++A       R   +V N  
Sbjct: 50  RASELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCN-- 107

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ LM+VC  + + E A  V   +   G   +   Y  LI    K G      +V  
Sbjct: 108 VHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLD 167

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            + + G +P V TY  ++  C ++GQ   A   Y  M +   +P    + ALI+A G++G
Sbjct: 168 ALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTG 227

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A  +  +M       + + IT  +L+ AC  AG+   A E+   +H+ N K     
Sbjct: 228 KIEEALRIFQDMVRR--GCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVT 285

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   ++ C+Q G W+ A  V++ M   G  PD V  + LI       +   A + L E +
Sbjct: 286 FNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQ 345

Query: 332 NQG 334
            QG
Sbjct: 346 GQG 348



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 120/270 (44%), Gaps = 11/270 (4%)

Query: 22  AHDVSEQLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
            H V   +H+Y+ L    I+   +   +D+   + R+G    + V +    ++       
Sbjct: 101 GHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTP-NLVTYNILIDIHGKMGNW 159

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +EA +    + +    P + T+N ++S C  S   E A +V   +   G +     YT L
Sbjct: 160 QEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTAL 219

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I+   K+GK++    +F +MV  G E NV TY +LI  C KAG+   A      M   N 
Sbjct: 220 ISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNC 279

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KP+ V FNAL++AC Q G    A DV  +M +      PD ++   L+ A     Q  RA
Sbjct: 280 KPNTVTFNALLSACAQGGQWKAAQDVFEQMPS--CGCKPDAVSYAILISAFDRGNQWCRA 337

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
            +    +     +    VY + I   +++G
Sbjct: 338 LQALDEMQGQGHRPDVGVYNVVIEALTRSG 367



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 9/194 (4%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           ++ +YN ++    R G+    + + E M   G       Y A      K+ K I+EA R 
Sbjct: 177 EVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGK-IEEALRI 235

Query: 84  FKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F+ +        + T++ L+S C  +   + A ++L  +     K +   +  L++ CA+
Sbjct: 236 FQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQ 295

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G+  A  +VF +M + G +P+  +Y  LI    +  Q  +A  A   M+ +  +PD  V
Sbjct: 296 GGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGV 355

Query: 200 FNALITACGQSGAV 213
           +N +I A  +SG +
Sbjct: 356 YNVVIEALTRSGVL 369



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 27/225 (12%)

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           + +Y++++  C + +  +KALEL   M+   +   V T +AL+      ++L   ++V  
Sbjct: 73  VYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYG 132

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 458
            +   G  PN +TY+IL+    +  + +  + +L   ++ G  P +  +  I+  C+R  
Sbjct: 133 QLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNR-- 190

Query: 459 EKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 518
                         SG+P+        AL VY   +  G  PT    + ++         
Sbjct: 191 --------------SGQPE-------HALRVYERMLADGAQPTATTYTALISAYGKTGKI 229

Query: 519 DIRERLVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEE 560
           +   R+ +++   G   + +  S+L S  +  G +   A  LL+E
Sbjct: 230 EEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQ-LALELLDE 273


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 176/345 (51%), Gaps = 2/345 (0%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           +++ A Q++R ++E  +K D  +Y  +I +  K+  V     ++ EM    I PNV TY 
Sbjct: 189 ETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYT 248

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI G    G + +A      M+ KN+ PD   F+ LI A G+ G +  A  VLA M   
Sbjct: 249 TLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKA 308

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V PD +T  +L+       +V  A+ V+  + +  +    + YTI I+   +T   +
Sbjct: 309 Y--VKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVD 366

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A S++++M  K VIP+ +  ++LID    +G++   ++++ + +++     +I+YSSL+
Sbjct: 367 EAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLI 426

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A     +  +A+ L++ M + +++P + T   LI  LC G +L    EV   +   G  
Sbjct: 427 DALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYH 486

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +  TY++++    +    +  L LLS+ +++G IPN + F  II
Sbjct: 487 LDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIII 531



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 179/426 (42%), Gaps = 41/426 (9%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R   + P P    FN ++S     +    A  + + +   G+ +D      LI      G
Sbjct: 59  RMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLG 118

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++   F V   ++  G  P+V T   LI G    G+V KA   +  + +   + DR+ + 
Sbjct: 119 QITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYG 178

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMK------ACANAGQVD 251
            LI    + G    A  ++   N E   + PD    +I I +L K      AC    +++
Sbjct: 179 TLINGLCKIGETKAAIQLMR--NLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMN 236

Query: 252 RAREVY-------KMIHKYNIKG-----------------TPEVYT--IAINCCSQTGDW 285
            A+++Y        +I+ + I G                  P+VYT  I I+   + G  
Sbjct: 237 -AKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKM 295

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A  V   M K  V PD V  ++L+D      +V+ A  +       G++ G+ SY+ +
Sbjct: 296 KAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIM 355

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +      K   +A+ L+E MK   + P   T N+LI  LC   ++    +++  M+    
Sbjct: 356 IDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQ 415

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKART 463
             + ITYS L+ A  +   ++  + L  +     + P++  +  +I G+C   R + A+ 
Sbjct: 416 LADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQE 475

Query: 464 LNEHVL 469
           + +H+L
Sbjct: 476 VFQHLL 481



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 139/317 (43%), Gaps = 37/317 (11%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP + TF++L+         + A  VL ++ +A +K D   Y +L+       +V     
Sbjct: 276 NPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKY 335

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF+ M  +G+ P V +Y  +IDG  K   V +A   +  M+ KNV P+ + FN+LI    
Sbjct: 336 VFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLC 395

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +SG +   +D++ +M       D   IT  +L+ A      +D+A  ++K +    I+  
Sbjct: 396 KSGRIAYVWDLVDKMRDRSQLADV--ITYSSLIDALCKNCHLDQAIALFKKMITQEIQ-- 451

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P++YT  I                                 LID     G+++ A E+ Q
Sbjct: 452 PDMYTYTI---------------------------------LIDGLCKGGRLKIAQEVFQ 478

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G  + I +Y+ ++     A  + +AL L   M+     P   T + +I AL + D
Sbjct: 479 HLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKD 538

Query: 389 QLPKTMEVLSDMKSLGL 405
           +  K  ++L +M + GL
Sbjct: 539 ENDKAEKLLREMIARGL 555



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 13/223 (5%)

Query: 17  KHANYAHD------VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR 66
           KHA Y  +      V+  + SY  +I    +   + E I L E+M+ K ++     +++ 
Sbjct: 331 KHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSL 390

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLS---TFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
              +CKS +         K+     L+   T++ L+     +   + A  + + +    +
Sbjct: 391 IDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEI 450

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
           + D   YT LI    K G++    EVF  ++  G   ++ TY  +I G  KAG   +A  
Sbjct: 451 QPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALA 510

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
               M      P+ + F+ +I A  +    D+A  +L EM A 
Sbjct: 511 LLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIAR 553


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 204/436 (46%), Gaps = 11/436 (2%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D      +YN +I      GR+ E   +L++ME   L       +     +CK++K ++E
Sbjct: 383 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK-LEE 441

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A++ F+       NP   T+  L+         + A+++   + +AG  A+  +YT+LI 
Sbjct: 442 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 501

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
                G+ +   ++F E++  G +P++      +D   KAG+V K    +  +RS    P
Sbjct: 502 NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLP 561

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D   ++ LI    ++G      ++   M  +   +D       A++     +G+V +A E
Sbjct: 562 DVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR--AYNAVVDGFCKSGKVHKAYE 619

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + + + +  ++ T   Y   ++  ++    + A  ++++   KG+  + V  S+LID  G
Sbjct: 620 ILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFG 679

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+++ A+ IL+E   +G++  + +++SL+ A   A+   +AL  ++ MK +K  P   
Sbjct: 680 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTY 739

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T + LI  LC   +  K      DM+  GL PN +TY+ ++    +  ++     L  + 
Sbjct: 740 TYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERF 799

Query: 436 KEDGVIPNLVMFKCII 451
           K +G IP+   F  +I
Sbjct: 800 KANGGIPDAASFNALI 815



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 200/464 (43%), Gaps = 45/464 (9%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN +I      GR  +   LLE +  +G +     +++    + K +K + EA   F+
Sbjct: 320 YAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRK-VDEALSLFE 378

Query: 86  LV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P  ST+N+++ +       E A+++L  ++ A L  +      ++    K+ K
Sbjct: 379 VMKKDAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK 438

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           ++  +++F      G  P+  TY +LIDG  K GQV +A+  +  M       + VV+ +
Sbjct: 439 LEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTS 498

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI      G  +    +  E+        PD   +   M     AG+V++ R +++ I  
Sbjct: 499 LIRNFFIHGRKEDGHKIFKELIR--RGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRS 556

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           Y        Y+I I+  ++ G      +++  M ++G   D    +A++D    +GKV  
Sbjct: 557 YGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHK 616

Query: 323 AFEIL-----------------------------------QEAKNQGISVGIISYSSLMG 347
           A+EIL                                   +EAK++GI + ++ YSSL+ 
Sbjct: 617 AYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLID 676

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                    +A  + E M    L P V T N+L+ AL   +++ + +     MK +   P
Sbjct: 677 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPP 736

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           NT TYSIL+    R        +     ++ G++PN+V +  +I
Sbjct: 737 NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 780



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 179/370 (48%), Gaps = 23/370 (6%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKG------LLD--MDKVYHARFFNVCKSQKAIKE 79
           Y  LIR     GR  +   + +++ R+G      LL+  MD V+ A      +  + I E
Sbjct: 496 YTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKA---GEVEKGRMIFE 552

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             R +  +P+  + ++++L+     +  +     +   +++ G   D + Y  ++    K
Sbjct: 553 DIRSYGFLPD--VRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCK 610

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           SGKV   +E+  EM    ++P V TYGA++DG AK  ++ +A+  +   +SK ++ + V+
Sbjct: 611 SGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVL 670

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +++LI   G+ G +D A+ +L EM  +   + P+  T  +L+ A   A +++ A   ++ 
Sbjct: 671 YSSLIDGFGKVGRIDEAYLILEEMMKK--GLTPNVYTWNSLLDALVKAEEINEALVCFQS 728

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +         Y+I IN   +   +  A   + DM K+G++P+ V  + +I      G 
Sbjct: 729 MKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGN 788

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVS 375
           +  A+ + +  K  G      S+++L+   SNA    +A +++E  +     I +K  +S
Sbjct: 789 ITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCIS 848

Query: 376 TMNALITALC 385
            ++AL  + C
Sbjct: 849 LLDALNKSEC 858



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 181/395 (45%), Gaps = 17/395 (4%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +L   P  S + +L+   A ++  E A ++LR +QE G +    L+TTL+   A+ G+V 
Sbjct: 172 RLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVA 231

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  E+  + +EP++  Y   ID   KAG V  A+  +  ++++ +KPD V + ++I
Sbjct: 232 DALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMI 291

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               ++G +  A ++ A+M AE     P       ++    +AG+ + A   YK++ +  
Sbjct: 292 WVLCKAGRLGEAEELFAQMEAERSV--PCAYAYNTMIMGYGSAGRFEDA---YKLLERLR 346

Query: 265 IKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
            +G  P V  +   + C  +    + A S+++ M KK   P+    + +ID     G+VE
Sbjct: 347 ERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVM-KKDAEPNSSTYNIIIDMLCLGGRVE 405

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A+ IL E ++  +   +++ + ++     A+  ++A +++E        P   T  +LI
Sbjct: 406 EAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLI 465

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACERKDDVEVGLMLLSQAKED 438
             L    Q+ +   +   M   G   N + Y+ L+       RK+D   G  +  +    
Sbjct: 466 DGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKED---GHKIFKELIRR 522

Query: 439 GVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSF 471
           G  P+L +    +    +    EK R + E + S+
Sbjct: 523 GCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY 557



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 93/421 (22%), Positives = 182/421 (43%), Gaps = 62/421 (14%)

Query: 145 AMFEVFHEMVNAGIE-PN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           A+ +V  EM   G   PN    H   AL+    +A ++  A  A  +MR    +P    +
Sbjct: 127 ALEKVLEEMAVLGYGLPNQACAHLAAALV----RARRLDDAVLAVAVMRRLKFRPAFSAY 182

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
             LI A  ++   +RA ++L +M    + V     T   L++A A  GQV  A  +   +
Sbjct: 183 TVLIGALAEARRPERALELLRQMQEVGYEVGVHLFT--TLVRALAREGQVADALALVDEV 240

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-------- 312
               ++    +Y + I+C  + G+ + A   + ++  +G+ PD+V  +++I         
Sbjct: 241 KGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRL 300

Query: 313 ------FA---------------------GHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
                 FA                     G AG+ E A+++L+  + +G    ++S++S+
Sbjct: 301 GEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSI 360

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +      +   +AL L+E MK    +P  ST N +I  LC G ++ +   +L +M+   L
Sbjct: 361 LTCLGKKRKVDEALSLFEVMKK-DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASL 419

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKART 463
            PN +T +I++    +   +E    +   A + G  P+ V +  +I    ++   ++A  
Sbjct: 420 FPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYR 479

Query: 464 LNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGC 511
           L E +L  ++G       +TSL               +++E I  G  P + +++  + C
Sbjct: 480 LFEKML--DAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDC 537

Query: 512 L 512
           +
Sbjct: 538 V 538


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 210/447 (46%), Gaps = 15/447 (3%)

Query: 77  IKEAFRFF-KLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           + +A R F  L  + T+ T+N M+   C + +  +      RL+       D   +  LI
Sbjct: 114 VADAERVFATLGASATVVTYNTMVNGYCRAGRIEDAR----RLISGMPFPPDTFTFNPLI 169

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
                 G+V     VF +M++ G  P+V TY  L+D   KA    +A      MR+K  +
Sbjct: 170 RALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCE 229

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V +N LI A    G VD A ++L+++ +  H   PD +T   ++K+   + +     
Sbjct: 230 PDIVTYNVLINAMCNEGDVDEALNILSDLPS--HGCKPDAVTYTPVLKSLCGSERWKEVE 287

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E++  +           +   +    Q G  + A  V D M++ G IPD V  S+++D  
Sbjct: 288 ELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGL 347

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G+V+ A E+L   K+ G     I+Y++++    + + W+ A EL   M      P  
Sbjct: 348 CDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDE 407

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N +I +LC    + + ++V+  M   G  P+ +TY+ ++     +  ++  + LLS 
Sbjct: 408 VTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSN 467

Query: 435 AKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492
            +  G  P++V F  ++ G+CS  R+E A  L  +++  +S  P     + ++   + ++
Sbjct: 468 LQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMM--HSDCPPDATTFNTVITSLCQK 525

Query: 493 AIVAGTIPTVEVVSKVLGCL--QLPYN 517
            ++   I T++++++  GC+  Q  YN
Sbjct: 526 GLLLQAIETLKIMAEN-GCIPNQSTYN 551



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 164/363 (45%), Gaps = 2/363 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P++ T+++L+     +     A  +L  ++  G + D   Y  LI      G VD    
Sbjct: 194 SPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALN 253

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  ++ + G +P+  TY  ++     + +  +    +  M S    PD V FN ++T+  
Sbjct: 254 ILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLC 313

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           Q G VDRA  V+  M+   H   PD +T  +++    + G+VD A E+   +  Y  K  
Sbjct: 314 QQGLVDRAIKVVDHMSE--HGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPD 371

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  +        WE A  +  +M      PDEV  + +I      G V+ A ++++
Sbjct: 372 TIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVE 431

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +    G +  I++Y+S++    N +    A+EL  +++S   KP + T N L+  LC  D
Sbjct: 432 QMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVD 491

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +     +++ +M      P+  T++ ++ +  +K  +   +  L    E+G IPN   + 
Sbjct: 492 RWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYN 551

Query: 449 CII 451
            ++
Sbjct: 552 IVV 554



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 186/432 (43%), Gaps = 12/432 (2%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI     +G + E +++L D+   G       Y     ++C S++  +    F ++
Sbjct: 234 TYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEM 293

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             N   P   TFN +++        + A +V+  + E G   D   Y++++      G+V
Sbjct: 294 ASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRV 353

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   E+   + + G +P+   Y  ++ G     Q   A      M   +  PD V FN +
Sbjct: 354 DDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTV 413

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I +  Q G VDRA  V+ +M+   +  +PD +T  +++    N   +D A E+   +  Y
Sbjct: 414 IASLCQKGLVDRAIKVVEQMSE--NGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSY 471

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             K     +   +        WE A  +  +M      PD    + +I      G +  A
Sbjct: 472 GCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQA 531

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E L+     G      +Y+ ++ A   A   Q+AL+L   M +    P + T N +I+ 
Sbjct: 532 IETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGT--PDLITYNTVISN 589

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           +    ++ + +++L  M S GL P+TITY  L     R+D  +  + +L + ++ G+ P+
Sbjct: 590 ITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPD 649

Query: 444 LVMFKCI-IGMC 454
              +  I +G C
Sbjct: 650 ATFYNDILLGFC 661



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 163/345 (47%), Gaps = 18/345 (5%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           LI      G+VA A   +  + +       V +N ++    ++G ++ A  +++ M    
Sbjct: 104 LIKRLCSGGRVADAERVFATLGASATV---VTYNTMVNGYCRAGRIEDARRLISGM---- 156

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEV--YTIAINCCSQTGD 284
            P  PD  T   L++A    G+V  A  V+  M+H+     +P V  Y+I ++   +   
Sbjct: 157 -PFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHR---GCSPSVVTYSILLDATCKASG 212

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
           +  A  + D+M  KG  PD V  + LI+   + G V+ A  IL +  + G     ++Y+ 
Sbjct: 213 YRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTP 272

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           ++ +   ++ W++  EL+  M S K  P   T N ++T+LC    + + ++V+  M   G
Sbjct: 273 VLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHG 332

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKAR 462
             P+ +TYS +L        V+  + LLS+ K  G  P+ + +  ++ G+CS  ++E A 
Sbjct: 333 CIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAE 392

Query: 463 TLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 507
            L   ++   S  P  E  + ++   + ++ +V   I  VE +S+
Sbjct: 393 ELMAEMVC--SDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSE 435



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 160/388 (41%), Gaps = 9/388 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRFFKLVPNPT 91
           L +QG +   I +++ M   G +     Y +    +C   +   A++   R       P 
Sbjct: 312 LCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPD 371

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
              +  ++    S +  E A +++  +  +    D   + T+I +  + G VD   +V  
Sbjct: 372 TIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVE 431

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M   G  P++ TY ++IDG      +  A      ++S   KPD V FN L+       
Sbjct: 432 QMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLC--- 488

Query: 212 AVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           +VDR  D    M   +H    PD  T   ++ +    G + +A E  K++ +        
Sbjct: 489 SVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQS 548

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y I ++   + G  + A  +   MT     PD +  + +I     AGK+E A ++L+  
Sbjct: 549 TYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAGKMEEALDLLRVM 606

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            + G+S   I+Y SL           +A+ +   ++ + L P  +  N ++   C   + 
Sbjct: 607 VSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRT 666

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVA 418
              ++  + M S G  P+  TY ILL A
Sbjct: 667 DIAIDCFAHMVSSGCMPDESTYIILLEA 694


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 191/416 (45%), Gaps = 19/416 (4%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSK 106
           M +KG    +  Y      +C++ + I EA + F  +      PT+ T+ +L+   + S 
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGR-INEALKLFADMTEDNCCPTVRTYTVLIYALSGSG 313

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
               A  +   ++E G + +   YT LI    K  K+D   ++  EM   G+ P+V TY 
Sbjct: 314 RKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYN 373

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           ALIDG  K G +  AF    +M S +  P+   +N LI    +   V +A  +L +M   
Sbjct: 374 ALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE- 432

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              + P  IT  +L+        ++ A  +  ++++  +      Y++ I+   + G  E
Sbjct: 433 -RKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVE 491

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A +++D +  KGV  +EV  +ALID     GK++ A+ +L+   N        +Y+ L+
Sbjct: 492 EAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLI 551

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                 K  ++A  L   M ++ +KPTV T   LI  +         ++V + M SLG  
Sbjct: 552 EGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQ 611

Query: 407 PNTITYSILLVA------CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           P+  TY+  L A       E  DDV      +++  E+G++P+LV +  +I   +R
Sbjct: 612 PDVCTYTAFLHAYFSQGMLEEVDDV------IAKMNEEGILPDLVTYTVLIDGYAR 661



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 182/376 (48%), Gaps = 7/376 (1%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           ++  C S +D     +V R +   G    K   + Y T++ + +K   +D M  V+ E++
Sbjct: 127 MIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           N  I PN++T+ A+++G  K G V +A      +    + PD   + +LI    ++  VD
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A++V   M  +      + ++   L+     AG+++ A +++  + + N   T   YT+
Sbjct: 247 NAYEVFLIMPQK--GCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I   S +G    A +++++M +KG  P+    + LID      K++ A ++L E   +G
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +   +++Y++L+           A E+ + M+S    P   T N LI  LC   ++ K M
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-M 453
            +L+ M    L P+ ITY+ L+    + +D+E    LLS   E+G++P+   +   I  +
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484

Query: 454 CSR-RYEKARTLNEHV 468
           C   R E+A TL + V
Sbjct: 485 CKEGRVEEAGTLFDSV 500



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 120/487 (24%), Positives = 201/487 (41%), Gaps = 68/487 (13%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +H+Y  LI    ++ ++ E   +L +M  KGL+     Y+A     CK +  I +AF  
Sbjct: 333 NVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCK-EGMIDDAFEI 391

Query: 84  FKLV------PN---------------------------------PTLSTFNMLMSVCAS 104
             L+      PN                                 P+L T+N L+     
Sbjct: 392 LDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164
             D E A+++L L+ E GL  D   Y+  I T  K G+V+    +F  +   G++ N   
Sbjct: 452 VNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVI 511

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y ALIDG  K G++  A+     M +    P+   +N LI    +   +  A  ++A+M 
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKM- 570

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQT 282
                V P  +T   L+      G  D A +V+   H  ++   P+V  YT  ++     
Sbjct: 571 -LTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN--HMVSLGYQPDVCTYTAFLHAYFSQ 627

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-------- 334
           G  E    V   M ++G++PD V  + LID     G    AF+ L+   + G        
Sbjct: 628 GMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIV 687

Query: 335 -ISVGIISYSSLM---------GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            I +  +S+ + M          + SN   ++ AL+L+E M        VS   ALI   
Sbjct: 688 SILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGF 747

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C  ++L +   ++  MK  G+ P+   Y+ LL  C +       + L+    E+G++P L
Sbjct: 748 CQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLL 807

Query: 445 VMFKCII 451
             +K ++
Sbjct: 808 ESYKLLV 814



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 179/428 (41%), Gaps = 34/428 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           + L ++GR+ E   L + ++ KG+   + +Y A     CK  K I  A+   + + N   
Sbjct: 482 DTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGK-IDVAYSLLERMLNDAC 540

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P   T+N+L+  +C   K  E +  V +++   G+K     YT LI    K G  D   
Sbjct: 541 LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLT-MGVKPTVVTYTILIGEMLKDGAFDHAL 599

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +VF+ MV+ G +P+V TY A +      G + +       M  + + PD V +  LI   
Sbjct: 600 KVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGY 659

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRAREVYKMIHKY 263
            + G   RAFD L  M      VD    P    +  L+K  ++  ++   R         
Sbjct: 660 ARLGLTHRAFDFLKCM------VDTGCKPSLYIVSILIKNLSHENRMKETRS-------- 705

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                     I I+  S T ++E A  +++ M + G   D     ALI       ++E A
Sbjct: 706 ---------EIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEA 756

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             ++   K +G+S     Y+SL+  C     + +A+ L + M    L P + +   L+  
Sbjct: 757 QGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCG 816

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L       K   V   + S G   + + + +L+    ++D V+    L+   +E G  PN
Sbjct: 817 LYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPN 876

Query: 444 LVMFKCII 451
            + +  +I
Sbjct: 877 PLTYSLLI 884



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 164/392 (41%), Gaps = 40/392 (10%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           ++A     CK    ++      K+V    +P   T+  L+     +K  + A++V  ++ 
Sbjct: 197 FNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMP 256

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           + G + +   YT LI    ++G+++   ++F +M      P V TY  LI   + +G+  
Sbjct: 257 QKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKV 316

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           +A   +  M+ K  +P+   +  LI    +   +D A  +L+EM+ +   + P  +T  A
Sbjct: 317 EALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEK--GLIPSVVTYNA 374

Query: 240 LMKACANAGQVDRAREVYKM-------------------------IHK--------YNIK 266
           L+      G +D A E+  +                         +HK           K
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK 434

Query: 267 GTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            +P +  Y   I+   +  D E A  +   M + G++PD+   S  ID     G+VE A 
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAG 494

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +    K +G+    + Y++L+           A  L E M +    P   T N LI  L
Sbjct: 495 TLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           C   ++ +   +++ M ++G+ P  +TY+IL+
Sbjct: 555 CKEKKMKEASSLVAKMLTMGVKPTVVTYTILI 586


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 194/435 (44%), Gaps = 6/435 (1%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G + +      +M  +G+L     Y +    +CK+Q   K     
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ +   G++ D   Y +L+    K+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+     ++F  M   G++P + TYG L+ G A  G + +  G   +M    + P+  VF
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + LI A  + G VD+A  V ++M  +   ++PD +T G ++     +G+V+ A   ++ +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQ--GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +     VY   I+       W+ A  +  +M  +G+  D +F +++ID     G+V
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             + ++       G+   II+YS+L+     A    +A +L   M S+ +KP   T N L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I   C   ++   + +  +M+S G+ P+ ITY+I+L    +         L     E G 
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGT 615

Query: 441 IPNLVMFKCII-GMC 454
              L  +  I+ G+C
Sbjct: 616 QLELSTYNIILHGLC 630



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/469 (22%), Positives = 207/469 (44%), Gaps = 47/469 (10%)

Query: 40  RISECIDL-LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN------PTL 92
           R S+ +D+ L  M + G +     Y+     +C   ++ +EA    +++P+      P +
Sbjct: 141 RTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRS-QEALELLQMMPDDGGDCPPDV 199

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            ++  +++      D + A+     + + G+  +   Y+++I    K+  +D   EV   
Sbjct: 200 VSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTS 259

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV  G+ PN  TY +++ G   +GQ  +A G    M S  V+PD V +N+L+    ++G 
Sbjct: 260 MVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR 319

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              A  +   M      + P+  T G L++  A  G +     +  ++ +  I     V+
Sbjct: 320 CTEARKMFDSMTK--RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 377

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +I I   ++ G  + A  V+  M ++G+ PD V    +I     +G+VE A    ++  +
Sbjct: 378 SILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMID 437

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALEL------------------------------- 361
           + +S G I Y+SL+ +      W KA EL                               
Sbjct: 438 ERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIE 497

Query: 362 ----YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
               ++ M  I +KP + T + LI   C   ++ +  ++L+ M S+G+ P+ +TY+ L+ 
Sbjct: 498 SEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLIN 557

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 464
              +   +E  L+L  + +  GV P+++ +  I+     +RR   A+ L
Sbjct: 558 GYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 178/416 (42%), Gaps = 46/416 (11%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-----------LKA 125
           IK+ FR   +   P      +L  +CA  + S+    VLR + + G           LK 
Sbjct: 118 IKKGFRVDAIAFTP------LLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKG 171

Query: 126 DCK--------------------------LYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
            C                            YTT+I    K G +D  +  +HEM++ GI 
Sbjct: 172 LCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGIL 231

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PNV TY ++I    KA  + KA      M    V P+   +N+++     SG    A   
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L +M+++   V+PD +T  +LM      G+   AR+++  + K  +K     Y   +   
Sbjct: 292 LKKMHSD--GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGY 349

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
           +  G       + D M + G+ P+    S LI      GKV+ A  +  + + QG++   
Sbjct: 350 ATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDT 409

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++Y +++G    +   + A+  +E M   +L P     N+LI +LC  D+  K  E++ +
Sbjct: 410 VTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILE 469

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           M   G+C +TI ++ ++ +  ++  V     L       GV P+++ +  +I G C
Sbjct: 470 MLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 525



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 153/334 (45%), Gaps = 12/334 (3%)

Query: 150 FHEMVNAG---IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           ++ M  AG   + PN+ TYG LI  C  AG++   F A G +  K  + D + F  L+  
Sbjct: 76  YNRMARAGADEVTPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKG 135

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                    A D++     ++  + P+  +   L+K   +  +   A E+ +M+      
Sbjct: 136 LCADKRTSDAMDIVLRRMTQLGCI-PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD 194

Query: 267 GTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P+V  YT  IN   + GD + A   Y +M  +G++P+ V  S++I     A  ++ A 
Sbjct: 195 CPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAM 254

Query: 325 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           E+L      G+     +Y+S++ G CS+ +  ++A+   + M S  ++P V T N+L+  
Sbjct: 255 EVLTSMVKNGVMPNCRTYNSIVHGYCSSGQP-KEAIGFLKKMHSDGVEPDVVTYNSLMDY 313

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   +  +  ++   M   GL P   TY  LL     K  +     LL     +G+ PN
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477
             +F  +I  C+  Y K   +++ +L F+  R Q
Sbjct: 374 HYVFSILI--CA--YAKQGKVDQAMLVFSKMRQQ 403



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 119/510 (23%), Positives = 215/510 (42%), Gaps = 67/510 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM--RSKNVKPDRVVFNALITA 206
           V   M   G  PNV +Y  L+ G     +  +A     +M     +  PD V +  +I  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G +D+A+    EM      + P+ +T  +++ A   A  +D+A EV          
Sbjct: 209 FFKEGDLDKAYGTYHEMLD--RGILPNVVTYSSIIAALCKAQAMDKAMEVLT-------- 258

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                                       M K GV+P+    ++++     +G+ + A   
Sbjct: 259 ---------------------------SMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291

Query: 327 LQEAKNQGISVGIISYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           L++  + G+   +++Y+SLM   C N +   +A ++++ M    LKP ++T   L+    
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGR-CTEARKMFDSMTKRGLKPEITTYGTLLQGYA 350

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L +   +L  M   G+ PN   +SIL+ A  ++  V+  +++ S+ ++ G+ P+ V
Sbjct: 351 TKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTV 410

Query: 446 MFKCIIG-MC-SRRYEKARTLNEHVLS---------FNSGRPQ--IENKW---TSLALMV 489
            +  +IG +C S R E A    E ++          +NS      I +KW     L L +
Sbjct: 411 TYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEM 470

Query: 490 YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF-- 547
               I   TI    ++       ++  +  + + +V  +GV  D +  S   +LIDG+  
Sbjct: 471 LDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYS---TLIDGYCL 526

Query: 548 -GEYDPRAFSLLEEAASFGIVP-CVSFKEI 575
            G+ D  A  LL    S G+ P CV++  +
Sbjct: 527 AGKMD-EATKLLASMVSVGMKPDCVTYNTL 555



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 106/475 (22%), Positives = 197/475 (41%), Gaps = 44/475 (9%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
            +YN ++      G+  E I  L+ M   G+      Y++    +CK+ +   EA + F 
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCT-EARKMFD 328

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K    P ++T+  L+   A+         +L L+   G+  +  +++ LI   AK G
Sbjct: 329 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQG 388

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KVD    VF +M   G+ P+  TYG +I    K+G+V  A   +  M  + + P  +V+N
Sbjct: 389 KVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYN 448

Query: 202 ALITACGQSGAVDRAFDVLAEM------------NAEVHP-------------------- 229
           +LI +       D+A +++ EM            N+ +                      
Sbjct: 449 SLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRI 508

Query: 230 -VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            V PD IT   L+     AG++D A ++   +    +K     Y   IN   +    E A
Sbjct: 509 GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDA 568

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-G 347
             ++ +M   GV PD +  + ++       +  AA E+       G  + + +Y+ ++ G
Sbjct: 569 LVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
            C N     +AL +++++    L+    T N +I AL    +  +  ++ + + + GL P
Sbjct: 629 LCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVP 687

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
           +  TYS++      +  +E    L    +E+G   N  M   I+    +R +  R
Sbjct: 688 DVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKLLQRGDITR 742



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/193 (17%), Positives = 84/193 (43%), Gaps = 7/193 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +  R+ + + L  +ME  G+      Y+     + ++++       +  +
Sbjct: 551 TYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGI 610

Query: 87  VPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             + T   LST+N+++     +  ++ A ++ + +    L+ + + +  +I    K G+ 
Sbjct: 611 TESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 670

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   ++F  +   G+ P+V TY  + +   + G + +    +  M       +  + N++
Sbjct: 671 DEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 730

Query: 204 ITACGQSGAVDRA 216
           +    Q G + RA
Sbjct: 731 VRKLLQRGDITRA 743


>gi|215687268|dbj|BAG91833.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 137

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/134 (50%), Positives = 98/134 (73%)

Query: 458 YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517
           ++   +L   V++FN G+PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++
Sbjct: 2   FDNDLSLGNIVVTFNLGKPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHD 61

Query: 518 ADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPV 577
             +    +EN+G+S D     N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  +
Sbjct: 62  NTLTNTFIENMGISCDIPHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRI 121

Query: 578 VVDARKLEIHTAKV 591
           +VDARK +I+TA+V
Sbjct: 122 LVDARKSKIYTAEV 135


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 134/529 (25%), Positives = 220/529 (41%), Gaps = 82/529 (15%)

Query: 69  NVCKSQKAIKEAF----RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            +C+ +K + EAF    R  +    P   T+N+ +     ++  + AFQ+L+ + E    
Sbjct: 16  GLCR-EKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCL 74

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
                YT L+    K+G++D    V  +MV  G  P + TY  +IDG +KAG+V +A   
Sbjct: 75  PTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRI 134

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMK 242
           +  M     +PD  V+ ALI    +SG  + A+ +  E NA  H     PD +T  +L+ 
Sbjct: 135 FVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLID 194

Query: 243 ACANAGQVDRAREVY--KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
               AG++  AR+V+  + + +  I      YT  I+   + G  E  C  + +M  +G 
Sbjct: 195 GLCKAGRILEARQVFDDEAVERGFIPDAV-TYTSIIDGLCKLGRVEEGCERFHEMRNRGY 253

Query: 301 IPDEVFLSALIDF--------AGH---------------------------AGKVEAAFE 325
            PD V  +ALID           H                           AG+V  A+ 
Sbjct: 254 EPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYA 313

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
                + +G    +++YS+LM    +  N   A+EL+  M     +P + + N +I  LC
Sbjct: 314 TFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLC 373

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNL 444
              +L K       +    LCP+  T++  L   C+R D V  G+ L       G  PNL
Sbjct: 374 RAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNL 433

Query: 445 VMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503
             +  ++ G+C     +A  L                    +AL ++RE +  G  P V 
Sbjct: 434 HSYSILMDGIC-----RAGGLE-------------------VALEIFREMVSRGVAPDVV 469

Query: 504 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRS-----NLCSLIDGF 547
           V + ++  L +    D      E L V  +  +RS     +  SL+DG 
Sbjct: 470 VFNTLIRWLCIAGRVD------EALEVFRELERRSAPDAWSYWSLLDGL 512



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 124/501 (24%), Positives = 211/501 (42%), Gaps = 58/501 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L++ GR+ E + +LE M  KG                                 +PTL T
Sbjct: 87  LLKAGRLDEAMAVLEQMVEKG--------------------------------NSPTLKT 114

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + +++   + +   E A ++   +   G + D  +YT LI    KSGK +  + ++ E  
Sbjct: 115 YTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEAN 174

Query: 155 ----NAGIEPNVHTYGALIDGCAKAGQVAKA---FGAYGIMRSKNVKPDRVVFNALITAC 207
               +A   P+V TY +LIDG  KAG++ +A   F    + R     PD V + ++I   
Sbjct: 175 ARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVER--GFIPDAVTYTSIIDGL 232

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G V+   +   EM    +  +PD +T  AL+     A  + +A  VY+ + +     
Sbjct: 233 CKLGRVEEGCERFHEMRNRGY--EPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVV 290

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +   Y I ++   + G    A + +  M ++G +   V  SAL+D     G V AA E+ 
Sbjct: 291 STVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELF 350

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +   ++G    ++SY+ ++     A    KA   +E +   +L P V T NA +  LC  
Sbjct: 351 RRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQR 410

Query: 388 -DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
            D +   +E+   M S G  PN  +YSIL+    R   +EV L +  +    GV P++V+
Sbjct: 411 LDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVV 470

Query: 447 FK------CIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 500
           F       CI G      E  R L           P   + W+ L  +   E +    + 
Sbjct: 471 FNTLIRWLCIAGRVDEALEVFRELERR------SAPDAWSYWSLLDGLSRCERMEEARLL 524

Query: 501 TVEVVSKVLGCLQLPYNADIR 521
           +  +  K+ GC    Y+  +R
Sbjct: 525 SFHM--KLQGCAPRHYDLTVR 543



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 166/372 (44%), Gaps = 8/372 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P +  F ++++     K  + AF VL     AG + D   Y   I    K+ +VD  F+
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M      P   TY AL+DG  KAG++ +A      M  K   P    +  +I    
Sbjct: 64  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH--KYNIK 266
           ++G V+ A  +  +M    +   PD     AL+K    +G+ + A  +YK  +  K++  
Sbjct: 124 KAGRVEEARRIFVDMLG--NGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHAT 181

Query: 267 GTPEV--YTIAINCCSQTGDWEFACSVYDD-MTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             P+V  YT  I+   + G    A  V+DD   ++G IPD V  +++ID     G+VE  
Sbjct: 182 AVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEG 241

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E   E +N+G     ++Y++L+     AK   KA  +Y  M       +  T N ++  
Sbjct: 242 CERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDG 301

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++ +       M+  G     +TYS L+     + +V   + L  +  + G  PN
Sbjct: 302 LCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPN 361

Query: 444 LVMFKCII-GMC 454
           LV +  II G+C
Sbjct: 362 LVSYNIIIRGLC 373


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 204/439 (46%), Gaps = 39/439 (8%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+  +++YN L+R    +GR+ E + ++ DM   G               C       
Sbjct: 146 HGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAG---------------CA------ 184

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTC 137
                      P   T+N L++    + + +GA +V+ L++E G  K +   + +++   
Sbjct: 185 -----------PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 233

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K+G+++   +VF EMV  G+ P+V +Y  L+ G  K G + ++   +  M  + + PD 
Sbjct: 234 CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 293

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V F +LI A  ++G +++A  ++A+M      +  + +T  AL+      G +D A    
Sbjct: 294 VTFTSLIHATCKAGNLEQAVALVAQMRER--GLRMNEVTFTALIDGFCKKGFLDDALLAV 351

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + + K  I+ +   Y   IN   + G  + A  +  +M  K V PD V  S +I      
Sbjct: 352 EEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKV 411

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G +++AF++ Q+   +G+    I+YSSL+      K    A EL+E+M  + ++P   T 
Sbjct: 412 GNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTY 471

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LI   C    + K + +  +M   G+ P+ +TYS+L+    +    +    LL +   
Sbjct: 472 TTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYH 531

Query: 438 DGVIPNLVMFKCIIGMCSR 456
           +  +P+ + +  ++  CS+
Sbjct: 532 EDPVPDNIKYDALMLCCSK 550



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 188/383 (49%), Gaps = 6/383 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N+L+    +    E A  V+  ++ AG   +   Y TL+    ++G++D    V
Sbjct: 150 PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 209

Query: 150 FHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              M   G  +PN+ T+ ++++G  KAG++  A   +  M  + + PD V +N L++   
Sbjct: 210 VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC 269

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  +  V +EM      + PD +T  +L+ A   AG +++A  +   + +  ++  
Sbjct: 270 KVGCLHESLAVFSEMTQR--GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +T  I+   + G  + A    ++M K G+ P  V  +ALI+     G+++ A E+++
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E + + +   +++YS+++       N   A +L + M    + P   T ++LI  LC+  
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L    E+  +M  LG+ P+  TY+ L+    ++ +VE  L L  +    GV+P++V + 
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507

Query: 449 CIIGMCSRRYEKARTLNEHVLSF 471
            +I   S+    ART   H L F
Sbjct: 508 VLINGLSK---SARTKEAHRLLF 527



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 185/375 (49%), Gaps = 17/375 (4%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+  G+ PNV+TY  L+      G++ +A G  G MR     P+ V +N L+ A  ++G 
Sbjct: 143 MLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 202

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A  V++ M  E +   P+ +T  +++     AG+++ AR+V+  + +  +      Y
Sbjct: 203 LDGAERVVSLMREEGN-AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSY 261

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              ++   + G    + +V+ +MT++G++PD V  ++LI     AG +E A  ++ + + 
Sbjct: 262 NTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE 321

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G+ +  +++++L+           AL   E M+   ++P+V   NALI   C   ++  
Sbjct: 322 RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDL 381

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
             E++ +M++  + P+ +TYS ++    +  +++    L  +  + GV+P+ + +  +I 
Sbjct: 382 ARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIR 441

Query: 452 GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGT 498
           G+C  +R   A  L E++L    G    E  +T+L            AL ++ E I  G 
Sbjct: 442 GLCEEKRLNDACELFENMLQL--GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 499

Query: 499 IPTVEVVSKVLGCLQ 513
           +P V   S ++  L 
Sbjct: 500 LPDVVTYSVLINGLS 514



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 186/404 (46%), Gaps = 23/404 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + GR+     + ++M R+GL      Y+      CK    + E+   F  +     
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKV-GCLHESLAVFSEMTQRGL 289

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + TF  L+     + + E A  ++  ++E GL+ +   +T LI    K G +D    
Sbjct: 290 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 349

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EM   GI+P+V  Y ALI+G  K G++  A      M +K VKPD V ++ +I+   
Sbjct: 350 AVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +D AF +  +M  +   V PD IT  +L++      +++ A E+++ + +  ++  
Sbjct: 410 KVGNLDSAFQLNQKMLKK--GVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 467

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  I+   + G+ E A S++D+M +KGV+PD V  S LI+    + + + A  +L 
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 527

Query: 329 EAKNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPT 373
           +  ++      I Y +LM  CS A+                 ++A ++Y+ M     K  
Sbjct: 528 KLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLD 587

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
            S  + LI   C G  + K +     M   G  PN+ T +I LV
Sbjct: 588 GSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNS-TSTISLV 630



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 20/311 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAFRFFKLVP-NPTLS 93
           ++G + + +  +E+M + G+      Y+A     CK  +    +E  R  +     P + 
Sbjct: 340 KKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV 399

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ ++S      + + AFQ+ + + + G+  D   Y++LI    +  +++   E+F  M
Sbjct: 400 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 459

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +  G++P+  TY  LIDG  K G V KA   +  M  K V PD V ++ LI    +S   
Sbjct: 460 LQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSART 519

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---------------GQVDRAREVYK 258
             A  +L ++  E  PV PD+I   ALM  C+ A               G +  A +VY+
Sbjct: 520 KEAHRLLFKLYHE-DPV-PDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQ 577

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +   N K    VY+I I+   + G+   A S +  M + G  P+     +L+      G
Sbjct: 578 SMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEG 637

Query: 319 KVEAAFEILQE 329
            V  A   +Q+
Sbjct: 638 MVVEADNAIQD 648


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 203/436 (46%), Gaps = 11/436 (2%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D    + +YN +I      GR++E   + ++ME  GL       +     +CK+ + ++E
Sbjct: 380 DAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQ-LEE 438

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A R F+       NP   T+  L+         + A+++   + +AG  A+  +YT+LI 
Sbjct: 439 AHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIR 498

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
                G+ +   +++ EM+  G  P++      +D   KAG+V K    +  M+S    P
Sbjct: 499 NFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLP 558

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D   ++ LI    ++G      ++   M+ +   +D       A++     +G+VD+A E
Sbjct: 559 DVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDAR--AYNAVVDGLCKSGKVDKAYE 616

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           V + +   ++  T   Y   ++  ++    + A  ++++   KG+  + +  S+LID  G
Sbjct: 617 VLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFG 676

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+++ A+ IL+E   +G++  + +++SLM A    +   +AL  ++ MK +K  P   
Sbjct: 677 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTY 736

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T + LI  LC   +  K      +M+  GL PN +TY+ ++    +  ++     L  + 
Sbjct: 737 TYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERF 796

Query: 436 KEDGVIPNLVMFKCII 451
           K +G IP+   F  +I
Sbjct: 797 KTNGGIPDSASFNALI 812



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 184/385 (47%), Gaps = 25/385 (6%)

Query: 17  KHANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKG------LLD--MDKVYH 64
           K  +  HD +  +  Y  LIR     GR  +   + ++M R+G      LL+  MD V+ 
Sbjct: 480 KMLDAGHDANPII--YTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFK 537

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           A      +  +AI E  + F  +P+  + ++++L+     +  +     + + + + G  
Sbjct: 538 A---GEVEKGRAIFEDMKSFGFLPD--VRSYSILIHGLTKAGQARETSNIFQAMSQQGFA 592

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
            D + Y  ++    KSGKVD  +EV  EM    + P V TYG+++DG AK  ++ +A+  
Sbjct: 593 LDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYML 652

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
           +   +SK ++ + +++++LI   G+ G +D A+ +L EM  +   + P+  T  +LM A 
Sbjct: 653 FEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKK--GLTPNVYTWNSLMDAL 710

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
               ++D A   ++ + +         Y+I IN   +   +  A   + +M K+G+IP+ 
Sbjct: 711 VKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNV 770

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V  + +I      G +  A+ + +  K  G      S+++L+   SNA    +A +++E 
Sbjct: 771 VTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEE 830

Query: 365 MK----SIKLKPTVSTMNALITALC 385
            +     + +K  +S ++AL    C
Sbjct: 831 TRLRGCRLNVKTCISLLDALNKTEC 855



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 114/571 (19%), Positives = 216/571 (37%), Gaps = 100/571 (17%)

Query: 75  KAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           + +++AFR       L   P  S + +L+   A ++  E A ++LR +Q+ G +    L+
Sbjct: 155 RRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLF 214

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           TTL+   A+ G+++    +  E+  + +EP++  Y   ID   KAG V  A+  +  +++
Sbjct: 215 TTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKA 274

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------------------VHPVD- 231
             ++PD V + +++    ++G +  A ++  +M AE                      D 
Sbjct: 275 HGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDD 334

Query: 232 --------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
                         P  ++  +++       +VD A  ++ ++ K + K     Y I I+
Sbjct: 335 AYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKK-DAKPNISTYNIIID 393

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
                G    A  + D+M   G+ P+ + ++ ++D    A ++E A  I + A  +G + 
Sbjct: 394 MLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNP 453

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHM-------------------------------- 365
             ++Y SL+           A  L+E M                                
Sbjct: 454 NSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIY 513

Query: 366 -KSIKL--KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
            + I+   +P ++ +N  +  +    ++ K   +  DMKS G  P+  +YSIL+    + 
Sbjct: 514 KEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKA 573

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENK 481
                   +     + G   +   +  ++ G+C                  SG+      
Sbjct: 574 GQARETSNIFQAMSQQGFALDARAYNAVVDGLC-----------------KSGK------ 610

Query: 482 WTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLC 541
               A  V  E  V    PTV     ++  L      D    L E        L      
Sbjct: 611 -VDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYS 669

Query: 542 SLIDGFGEYD--PRAFSLLEEAASFGIVPCV 570
           SLIDGFG+      A+ +LEE    G+ P V
Sbjct: 670 SLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 700



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 144/348 (41%), Gaps = 26/348 (7%)

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           AL+    +S  ++ AF V+  M        P       L+ A A A Q +RA E+ + + 
Sbjct: 146 ALVATLVRSRRLEDAFRVIGAMRH--LKFRPPFSAYTVLIGALAEARQPERALELLRQMQ 203

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
               + +  ++T  +   ++ G  E A ++ D++    + PD V  +  ID  G AG V+
Sbjct: 204 DVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVD 263

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A++   E K  G+    +SY+S++     A    +A EL+  M++ +  P     N +I
Sbjct: 264 MAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMI 323

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
                 ++     ++L  ++  G  P+ ++++ +L    +K  V+  L L    K+D   
Sbjct: 324 MGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAK- 382

Query: 442 PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 501
           PN+  +  II M       A  +NE                   A  +  E  +AG  P 
Sbjct: 383 PNISTYNIIIDMLC----MAGRVNE-------------------AYKIRDEMELAGLFPN 419

Query: 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 549
           +  V+ ++  L      +   R+ E+             CSLIDG G+
Sbjct: 420 LLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGK 467


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 202/448 (45%), Gaps = 27/448 (6%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTTLITTCA 138
           R  +L   P + ++N L+    + K +E A ++L ++ ++  ++   +   Y  +I    
Sbjct: 155 RMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFF 214

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
             G+VD  + +F EM++ GI+PNV TY  +IDG  KA  V +A G +  M  K VKPD  
Sbjct: 215 TEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDND 274

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +N LI      G       +L EM+A  H + PD  T G+L+    N G+   AR ++ 
Sbjct: 275 TYNCLIHGYLSIGKWKEVVRMLEEMSA--HGLKPDCYTYGSLLNYLCNNGRCREARFLFD 332

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + +  IK    +Y I I+  +  G       + + M + G+ PD    + +        
Sbjct: 333 SMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKA 392

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
            ++ A  I  + K QG+S  +++Y +L+ A         A+  +  M +  + P +   N
Sbjct: 393 MIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFN 452

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           +L+  LC  D+  K  E   +M + G+ P+ + ++ +L     K  V     L+   +  
Sbjct: 453 SLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERV 512

Query: 439 GVIPNLVMFKCIIG---MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM------- 488
           G  P ++ +  +IG   +  R  E A++L+  V+     +P   ++WT   L+       
Sbjct: 513 GTRPGVISYTTLIGGHCLVGRIDEAAKSLD--VMLSVGLKP---DEWTYNTLLHGYCRAG 567

Query: 489 -------VYREAIVAGTIPTVEVVSKVL 509
                  V+RE +  G  P V   S +L
Sbjct: 568 RIDDAYGVFREMLRNGITPGVVTYSTIL 595



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 193/428 (45%), Gaps = 10/428 (2%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G+  E + +LE+M   GL      Y +    +C + +  +  F F  +
Sbjct: 275 TYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSM 334

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +     P ++ + +L+   A+         +L L+ E GL  D  ++  + T  AK   +
Sbjct: 335 IRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMI 394

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D    +F++M   G+ P+V  YGALID   K G+V  A   +  M ++ V P+  VFN+L
Sbjct: 395 DEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSL 454

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +         ++A +   EM  +   + PD +    ++      GQV +A+ +  ++ + 
Sbjct: 455 VYGLCTVDKWEKAKEFYFEMLNQ--GIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERV 512

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             +     YT  I      G  + A    D M   G+ PDE   + L+     AG+++ A
Sbjct: 513 GTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDA 572

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           + + +E    GI+ G+++YS+++      + + +A ELY +M +   +  +   N ++  
Sbjct: 573 YGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNG 632

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L   + + +  ++   + S        T++I++ A  +    E  + L +     G++P+
Sbjct: 633 LSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPD 692

Query: 444 LVMFKCII 451
           +  + C+I
Sbjct: 693 VFTY-CLI 699



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 108/495 (21%), Positives = 195/495 (39%), Gaps = 51/495 (10%)

Query: 22  AHDVSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH +    ++Y    N L   GR  E   L + M RKG+     +Y     +   ++ A+
Sbjct: 301 AHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIY-GILIHGYATKGAL 359

Query: 78  KEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            E      L+    LS     FN++ +  A     + A  +   +++ GL  D   Y  L
Sbjct: 360 SEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGAL 419

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    K G+VD     F++M+N G+ PN+  + +L+ G     +  KA   Y  M ++ +
Sbjct: 420 IDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGI 479

Query: 194 KPDRVVFNALI-TAC--GQSGAVDRAFDVLAEMNAE---------------VHPVD---- 231
           +PD V FN ++   C  GQ     R  D++  +                  V  +D    
Sbjct: 480 RPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAK 539

Query: 232 -----------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
                      PD  T   L+     AG++D A  V++ + +  I      Y+  ++   
Sbjct: 540 SLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLF 599

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
            T  +  A  +Y +M   G   +    + +++       V+ AF++ Q   ++   + I 
Sbjct: 600 TTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEIT 659

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +++ ++GA   +   + A+ L+  + S  L P V T   +   L +   L +  ++ S M
Sbjct: 660 TFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAM 719

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RY- 458
           +  G  PN+   + L+     + D+      L +  E            +I + SR  Y 
Sbjct: 720 EKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLISLLSRDEYH 779

Query: 459 -------EKARTLNE 466
                  EK R LNE
Sbjct: 780 HHATSLPEKYRVLNE 794



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 142/323 (43%), Gaps = 8/323 (2%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + P+  TY  LI    + G++   F  +G++     + + +V N L+     +  +  A 
Sbjct: 90  VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAM 149

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTI 274
           D+L +   E+    PD ++   L+K   N  + + A E+  M+     +  P     Y I
Sbjct: 150 DILVKRMPEL-GCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAI 208

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            IN     G  + A +++ +M  +G+ P+ V  + +ID    A  V+ A  + Q+  ++G
Sbjct: 209 VINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKG 268

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +     +Y+ L+    +   W++ + + E M +  LKP   T  +L+  LC+  +  +  
Sbjct: 269 VKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREAR 328

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
            +   M   G+ PN   Y IL+     K  +     LL+   E+G+ P+  +F  I    
Sbjct: 329 FLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIF--- 385

Query: 455 SRRYEKARTLNEHVLSFNSGRPQ 477
              Y K   ++E +  FN  + Q
Sbjct: 386 -TAYAKKAMIDEAMHIFNKMKQQ 407


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 191/416 (45%), Gaps = 19/416 (4%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSK 106
           M +KG    +  Y      +C++ + I EA + F  +      PT+ T+ +L+   + S 
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGR-INEALKLFADMTEDNCCPTVRTYTVLIYALSGSG 313

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
               A  +   ++E G + +   YT LI    K  K+D   ++  EM   G+ P+V TY 
Sbjct: 314 RKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYN 373

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           ALIDG  K G +  AF    +M S +  P+   +N LI    +   V +A  +L +M   
Sbjct: 374 ALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLER 433

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              + P  IT  +L+        ++ A  +  ++++  +      Y++ I+   + G  E
Sbjct: 434 --KLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVE 491

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A +++D +  KGV  +EV  +ALID     GK++ A+ +L+   N        +Y+ L+
Sbjct: 492 EAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLI 551

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                 K  ++A  L   M ++ +KPTV T   LI  +         ++V + M SLG  
Sbjct: 552 EGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQ 611

Query: 407 PNTITYSILLVA------CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           P+  TY+  L A       E  DDV      +++  E+G++P+LV +  +I   +R
Sbjct: 612 PDVCTYTAFLHAYFSQGMLEEVDDV------IAKMNEEGILPDLVTYTVLIDGYAR 661



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 182/376 (48%), Gaps = 7/376 (1%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           ++  C S +D     +V R +   G    K   + Y T++ + +K   +D M  V+ E++
Sbjct: 127 MIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           N  I PN++T+ A+++G  K G V +A      +    + PD   + +LI    ++  VD
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A++V   M  +      + ++   L+     AG+++ A +++  + + N   T   YT+
Sbjct: 247 NAYEVFLIMPQK--GCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I   S +G    A +++++M +KG  P+    + LID      K++ A ++L E   +G
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +   +++Y++L+           A E+ + M+S    P   T N LI  LC   ++ K M
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAM 424

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-M 453
            +L+ M    L P+ ITY+ L+    + +D+E    LLS   E+G++P+   +   I  +
Sbjct: 425 ALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTL 484

Query: 454 CSR-RYEKARTLNEHV 468
           C   R E+A TL + V
Sbjct: 485 CKEGRVEEAGTLFDSV 500



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 195/460 (42%), Gaps = 44/460 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    ++G I +  ++L+ ME        + Y+     +CK +K  K      K+
Sbjct: 371 TYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKM 430

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +    +P+L T+N L+       D E A+++L L+ E GL  D   Y+  I T  K G+V
Sbjct: 431 LERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRV 490

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +    +F  +   G++ N   Y ALIDG  K G++  A+     M +    P+   +N L
Sbjct: 491 EEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVL 550

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    +   +  A  ++A+M      V P  +T   L+      G  D A +V+   H  
Sbjct: 551 IEGLCKEKKMKEASSLVAKM--LTMGVKPTVVTYTILIGEMLKDGAFDHALKVFN--HMV 606

Query: 264 NIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           ++   P+V  YT  ++     G  E    V   M ++G++PD V  + LID     G   
Sbjct: 607 SLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTH 666

Query: 322 AAFEILQ-------------------------EAKNQGISVGIISYSSLMGACSNAKNWQ 356
            AF+ L+                           K     +GI S S+ + +   A  W+
Sbjct: 667 RAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSN-VNSVDIADVWK 725

Query: 357 K-----ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
                 AL+L+E M        VS   ALI   C  ++L +   ++  MK  G+ P+   
Sbjct: 726 TLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDI 785

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           Y+ LL  C +       + L+    E+G++P L  +K ++
Sbjct: 786 YNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLV 825



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 179/429 (41%), Gaps = 36/429 (8%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML 98
           GR  E ++L  +M+ KG               C+                 P + T+ +L
Sbjct: 313 GRKVEALNLFNEMKEKG---------------CE-----------------PNVHTYTVL 340

Query: 99  M-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           +  +C  +K  E A ++L  + E GL      Y  LI    K G +D  FE+   M +  
Sbjct: 341 IDGLCKENKMDE-ARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS 399

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
             PN  TY  LI G  K  +V KA      M  + + P  + +N+LI    +   ++ A+
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAY 459

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            +L+ MN   + + PD  T    +      G+V+ A  ++  +    +K    +YT  I+
Sbjct: 460 RLLSLMNE--NGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALID 517

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
              + G  + A S+ + M     +P+    + LI+      K++ A  ++ +    G+  
Sbjct: 518 GYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKP 577

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
            +++Y+ L+G       +  AL+++ HM S+  +P V T  A + A      L +  +V+
Sbjct: 578 TVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVI 637

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           + M   G+ P+ +TY++L+    R          L    + G  P+L +   +I   S  
Sbjct: 638 AKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHE 697

Query: 458 YEKARTLNE 466
                T +E
Sbjct: 698 NRMKETRSE 706



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 164/392 (41%), Gaps = 40/392 (10%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           ++A     CK    ++      K+V    +P   T+  L+     +K  + A++V  ++ 
Sbjct: 197 FNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMP 256

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           + G + +   YT LI    ++G+++   ++F +M      P V TY  LI   + +G+  
Sbjct: 257 QKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKV 316

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           +A   +  M+ K  +P+   +  LI    +   +D A  +L+EM+ +   + P  +T  A
Sbjct: 317 EALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEK--GLIPSVVTYNA 374

Query: 240 LMKACANAGQVDRAREVYKM-------------------------IHK--------YNIK 266
           L+      G +D A E+  +                         +HK           K
Sbjct: 375 LIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERK 434

Query: 267 GTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            +P +  Y   I+   +  D E A  +   M + G++PD+   S  ID     G+VE A 
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAG 494

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +    K +G+    + Y++L+           A  L E M +    P   T N LI  L
Sbjct: 495 TLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGL 554

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           C   ++ +   +++ M ++G+ P  +TY+IL+
Sbjct: 555 CKEKKMKEASSLVAKMLTMGVKPTVVTYTILI 586



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 171/403 (42%), Gaps = 23/403 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           + L ++GR+ E   L + ++ KG+   + +Y A     CK  K I  A+   + + N   
Sbjct: 482 DTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGK-IDVAYSLLERMLNDAC 540

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P   T+N+L+  +C   K  E +  V +++   G+K     YT LI    K G  D   
Sbjct: 541 LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLT-MGVKPTVVTYTILIGEMLKDGAFDHAL 599

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +VF+ MV+ G +P+V TY A +      G + +       M  + + PD V +  LI   
Sbjct: 600 KVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGY 659

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRAREVYKMIHKY 263
            + G   RAFD L  M      VD    P    +  L+K   N    +R +E    I   
Sbjct: 660 ARLGLTHRAFDFLKCM------VDTGCKPSLYIVSILIK---NLSHENRMKETRSEI--- 707

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            I     V ++ I    +T ++E A  +++ M + G   D     ALI       ++E A
Sbjct: 708 GIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEA 767

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             ++   K +G+S     Y+SL+  C     + +A+ L + M    L P + +   L+  
Sbjct: 768 QGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCG 827

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           L       K   V   + S G   + + + +L+    ++D V+
Sbjct: 828 LYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVD 870


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 218/472 (46%), Gaps = 19/472 (4%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F++L+  C   +  + A +   L++E G     +    ++T  ++  +++  +  + +M 
Sbjct: 158 FDLLVRCCCQLRMVDEAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMY 217

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
              I+ NV+T+  +I+   K G++ KA G  GIM    +KP  V +N L+      G ++
Sbjct: 218 RMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIE 277

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A  +++EM ++     PD  T   ++    N G   RA EV + + +  +      Y I
Sbjct: 278 GARLIISEMKSK--GFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSYNI 332

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I  CS  GD E A +  D+M K+G++P     + LI       K+EAA  +++E + +G
Sbjct: 333 LIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKG 392

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I +  ++Y+ L+       + +KA  L++ M +  ++PT  T  +LI  LC  ++  +  
Sbjct: 393 IVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREAD 452

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           E+   +   G+ P+ +  + L+       +++    LL +     + P+ V + C++ G+
Sbjct: 453 ELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGL 512

Query: 454 CSR-RYEKARTL----------NEHVLSFNSGRPQIENKW-TSLALMVYREAIVAGTIPT 501
           C   ++E+AR L           +H+ S+N+       K  T  A MV  E +  G  PT
Sbjct: 513 CGEGKFEEARELMGEMKRRGIKPDHI-SYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPT 571

Query: 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 553
           +   + +L  L      ++ E L+  +         S+ CS+I+     D +
Sbjct: 572 LLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDAK 623



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 184/427 (43%), Gaps = 12/427 (2%)

Query: 30  HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP- 88
           H    L R  RI        DM R  +      ++     +CK  K +K+A  F  ++  
Sbjct: 195 HILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGK-LKKAKGFLGIMEV 253

Query: 89  ---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               PT+ T+N L+   +     EGA  ++  ++  G + D + Y  +++     G+   
Sbjct: 254 FGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRAS- 312

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             EV  EM   G+ P+  +Y  LI GC+  G +  AF     M  + + P    +N LI 
Sbjct: 313 --EVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIH 370

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
                  ++ A  ++ E+  +   +  D +T   L+      G   +A  ++  +    I
Sbjct: 371 GLFMENKIEAAEILIREIREK--GIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGI 428

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           + T   YT  I    +      A  +++ +  KG+ PD V ++ L+D     G ++ AF 
Sbjct: 429 QPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFS 488

Query: 326 ILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +L+E     I+   ++Y+ LM G C   K +++A EL   MK   +KP   + N LI+  
Sbjct: 489 LLKEMDMMSINPDDVTYNCLMRGLCGEGK-FEEARELMGEMKRRGIKPDHISYNTLISGY 547

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
                      V  +M SLG  P  +TY+ LL    +  + E+   LL + K +G++PN 
Sbjct: 548 SKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPND 607

Query: 445 VMFKCII 451
             F  +I
Sbjct: 608 SSFCSVI 614



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 155/335 (46%), Gaps = 7/335 (2%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+N ++S +C   + SE    VLR ++E GL  D   Y  LI  C+ +G ++  F 
Sbjct: 293 PDMQTYNPILSWMCNEGRASE----VLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFA 348

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EMV  G+ P  +TY  LI G     ++  A      +R K +  D V +N LI    
Sbjct: 349 YRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYC 408

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           Q G   +AF +  EM  +   + P   T  +L+       +   A E+++ +    +K  
Sbjct: 409 QHGDAKKAFALHDEMMTD--GIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPD 466

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             +    ++     G+ + A S+  +M    + PD+V  + L+      GK E A E++ 
Sbjct: 467 LVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMG 526

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E K +GI    ISY++L+   S   + + A  + + M S+   PT+ T NAL+  L    
Sbjct: 527 EMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQ 586

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
           +     E+L +MKS G+ PN  ++  ++ A    D
Sbjct: 587 EGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLD 621



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 165/366 (45%), Gaps = 5/366 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           TFN++++V       + A   L +++  G+K     Y TL+   +  G+++    +  EM
Sbjct: 227 TFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEM 286

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            + G +P++ TY  ++      G+ ++       M+   + PD V +N LI  C  +G +
Sbjct: 287 KSKGFQPDMQTYNPILSWMCNEGRASEVLRE---MKEIGLVPDSVSYNILIRGCSNNGDL 343

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + AF    EM  +   + P   T   L+       +++ A  + + I +  I      Y 
Sbjct: 344 EMAFAYRDEMVKQ--GMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYN 401

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I IN   Q GD + A +++D+M   G+ P +   ++LI       K   A E+ ++   +
Sbjct: 402 ILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGK 461

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+   ++  ++LM       N  +A  L + M  + + P   T N L+  LC   +  + 
Sbjct: 462 GMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEA 521

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
            E++ +MK  G+ P+ I+Y+ L+    +K D +   M+  +    G  P L+ +  ++  
Sbjct: 522 RELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKG 581

Query: 454 CSRRYE 459
            S+  E
Sbjct: 582 LSKNQE 587



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 164/395 (41%), Gaps = 33/395 (8%)

Query: 194 KPDRVVFNALITACGQSGAVDRAFD--VLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           KP   +   ++T+  +  ++   FD  VLA    E        I    L++ C     VD
Sbjct: 119 KPVTQLLKEVVTS--RKNSIRNLFDELVLAHDRLETKST----ILFDLLVRCCCQLRMVD 172

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A E + ++ +       E     +   S+    E A   Y DM +  +  +    + +I
Sbjct: 173 EAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMI 232

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           +     GK++ A   L   +  GI   I++Y++L+   S     + A  +   MKS   +
Sbjct: 233 NVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQ 292

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P + T N +++ +C+     +  EVL +MK +GL P++++Y+IL+  C    D+E+    
Sbjct: 293 PDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAY 349

Query: 432 LSQAKEDGVIPNLVMFKCIIG--MCSRRYEKA----RTLNEHVLSFNSGRPQI------E 479
             +  + G++P    +  +I       + E A    R + E  +  +S    I      +
Sbjct: 350 RDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQ 409

Query: 480 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALK 536
           +     A  ++ E +  G  PT    + ++  L         + L E +   G+  D + 
Sbjct: 410 HGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVM 469

Query: 537 RSNLCSLIDG---FGEYDPRAFSLLEEAASFGIVP 568
              + +L+DG    G  D RAFSLL+E     I P
Sbjct: 470 ---MNTLMDGHCAIGNMD-RAFSLLKEMDMMSINP 500


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 188/421 (44%), Gaps = 38/421 (9%)

Query: 70  VCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           +C   K  K      ++V N   P + T+N +++    S D+  AF +LR ++E  +KAD
Sbjct: 168 LCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKAD 227

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y+T+I +  + G +DA   +F EM   GI+ +V TY +L+ G  KAG+         
Sbjct: 228 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLK 287

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP---------------- 229
            M S+ + P+ + FN L+    + G +  A ++  EM    + P                
Sbjct: 288 DMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQN 347

Query: 230 ----------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
                             PD +T  +L+K      +VD   +V++ I K  +      Y+
Sbjct: 348 RLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYS 407

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I +    Q+G  + A  ++ +M   GV+PD +    L+D     GK+E A EI ++ +  
Sbjct: 408 ILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 467

Query: 334 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            + +GI+ Y++++ G C   K  + A  L+  +    +KP V T   +I+ LC    L +
Sbjct: 468 KMDLGIVMYTTIIEGMCKGGK-VEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 526

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
              +L  M+  G  PN  TY+ L+ A  R  D+     L+ + K  G   +    K +I 
Sbjct: 527 ANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586

Query: 453 M 453
           M
Sbjct: 587 M 587



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 187/436 (42%), Gaps = 52/436 (11%)

Query: 43  ECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----T 94
           + I L ++M R     GL+D      +RFF+     K       F K +    ++    T
Sbjct: 71  DAIALFQEMIRSRPLPGLVD-----FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 125

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
            N++++       +  A+ VL  V + G + D   + TLI      GKV     +   MV
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMV 185

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G +P++ TY ++++G  ++G  + AF     M  +NVK D   ++ +I +  + G +D
Sbjct: 186 ENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A  +  EM  E   +    +T  +L++    AG+                         
Sbjct: 246 AAISLFKEM--ETKGIKSSVVTYNSLVRGLCKAGK------------------------- 278

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
                     W     +  DM  + ++P+ +  + L+D     GK++ A E+ +E   +G
Sbjct: 279 ----------WNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRG 328

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           IS  II+Y++LM          +A  + + M   K  P + T  +LI   C   ++   M
Sbjct: 329 ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGM 388

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           +V  ++   GL  N +TYSIL+    +   +++   L  +    GV+P+++ +  ++ G+
Sbjct: 389 KVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGL 448

Query: 454 CSR-RYEKARTLNEHV 468
           C   + EKA  + E +
Sbjct: 449 CDNGKLEKALEIFEDL 464



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 169/385 (43%), Gaps = 5/385 (1%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +  N   DV       + L R G I   I L ++ME KG+      Y++    +CK+ K 
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKW 279

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
              A     +V     P + TFN+L+ V       + A ++ + +   G+  +   Y TL
Sbjct: 280 NDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTL 339

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +       ++     +   MV     P++ T+ +LI G     +V      +  +  + +
Sbjct: 340 MDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL 399

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
             + V ++ L+    QSG +  A ++  EM +  H V PD +T G L+    + G++++A
Sbjct: 400 VANAVTYSILVQGFCQSGKIKLAEELFQEMVS--HGVLPDVMTYGILLDGLCDNGKLEKA 457

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E+++ + K  +     +YT  I    + G  E A +++  +  KGV P+ +  + +I  
Sbjct: 458 LEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISG 517

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G +  A  +L++ +  G +    +Y++L+ A     +   + +L E MKS      
Sbjct: 518 LCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577

Query: 374 VSTMNALITALCDGDQLPKTMEVLS 398
            S++  +I  L  G+     +++LS
Sbjct: 578 ASSIKMVIDMLLSGELDKSFLDMLS 602



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           +  +T   V   E   S ++D      K + A  + QE        G++ +S    A + 
Sbjct: 46  FSSITNGNVCFRERLRSGIVDI-----KKDDAIALFQEMIRSRPLPGLVDFSRFFSAIAR 100

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
            K +   L+  + ++   +   + T+N +I   C   +      VL  +  LG  P+T T
Sbjct: 101 TKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTT 160

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           ++ L+     +  V   ++L+ +  E+G  P++V +  I+ G+C
Sbjct: 161 FNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGIC 204


>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 808

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 181/393 (46%), Gaps = 14/393 (3%)

Query: 81  FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           FR+ KL  N    T  +NM++ + A    ++ A  +   +QE   K D + Y  LI    
Sbjct: 130 FRWMKLQKNYCARTDMYNMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAHG 189

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           ++G+      +  +M+   I P+  TY  LI+ C  +G   +A      M    V PD V
Sbjct: 190 RAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTENGVGPDLV 249

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
             N +++A        +A      M      + PD  T   ++      GQ ++A +++ 
Sbjct: 250 THNIVLSAYKTGAQYSKALSYFELMKGT--NIRPDTTTRNIVIYCLVKLGQCEKAIDIFN 307

Query: 259 MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            + +   +  P++  +T  I+  S +G  E   +V+  M  +G+ P  V  +ALI     
Sbjct: 308 SMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAF 367

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G  E A  + ++ K  G+   ++SY+SL+ +   +K  +KA E++  MK  KLKP V +
Sbjct: 368 HGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVS 427

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLS 433
            NALI A      L   ++VL +M+  G+ PN +T   LL AC R   K +++    +LS
Sbjct: 428 FNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDA---VLS 484

Query: 434 QAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 464
            AK  G+  N V     IG  M    YEKA  L
Sbjct: 485 AAKMRGIKLNTVACNSAIGSYMNVGEYEKAVAL 517



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 193/431 (44%), Gaps = 13/431 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G+    ++++EDM R+ +      Y+    N C S    +EA +  K 
Sbjct: 180 TYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYN-NLINACGSSGNWREALKVSKQ 238

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P L T N+++S   +      A     L++   ++ D      +I    K G+
Sbjct: 239 MTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQ 298

Query: 143 VDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            +   ++F+ M     E  P++ T+ ++I   + +GQV      +  M ++ + P  V +
Sbjct: 299 CEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSY 358

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           NALI A    G  + A  V  ++ A    + PD ++  +L+ +   + Q  +ARE++ M+
Sbjct: 359 NALIGAYAFHGMSEEALSVFKKIKAS--GLLPDVVSYTSLLSSYGRSKQPKKAREMFNMM 416

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            K  +K     +   I+     G    A  V  +M + G+ P+ V +  L+   G  G+ 
Sbjct: 417 KKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQK 476

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
                +L  AK +GI +  ++ +S +G+  N   ++KA+ LY  M+ +K+ P   T   L
Sbjct: 477 VNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVL 536

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I+  C   +  K +E  +DM  L +       S ++ A  ++  +     + +  K  G 
Sbjct: 537 ISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMKMAGC 596

Query: 441 IPNLVMFKCII 451
            P+++ F  ++
Sbjct: 597 CPDIITFTAML 607



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 159/366 (43%), Gaps = 2/366 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TF  ++ + + S   E    V   +   GL      Y  LI   A  G  +    V
Sbjct: 318 PDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAFHGMSEEALSV 377

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F ++  +G+ P+V +Y +L+    ++ Q  KA   + +M+   +KP+ V FNALI A G 
Sbjct: 378 FKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNALIDAYGS 437

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +  A  VL EM  E   + P+ +TI  L+ AC   GQ      V        IK   
Sbjct: 438 NGLLADAVKVLREM--EQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIKLNT 495

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
                AI      G++E A ++Y+ M K  V P+ V  + LI       K   A E   +
Sbjct: 496 VACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVLISGCCKMSKYGKAIEFFAD 555

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                I++     SS++ A S      +A  ++  MK     P + T  A++ A   G+ 
Sbjct: 556 MMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHAYNAGEH 615

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             K  +++ +M+   +  +TI  S L+ A  ++ +    L+L    KE  +  +  +F  
Sbjct: 616 WGKACDLIQEMEDYDIQLDTIACSALMRAFNKRGNPSQVLILAEFMKEKEIPFSDAIFFE 675

Query: 450 IIGMCS 455
           ++  CS
Sbjct: 676 MVSACS 681



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/429 (22%), Positives = 173/429 (40%), Gaps = 74/429 (17%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ ++N L+   A    SE A  V + ++ +GL  D   YT+L+++  +S +     E+
Sbjct: 353 PTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREM 412

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+ M  A ++PNV ++ ALID     G +A A      M    + P+ V    L+ ACG+
Sbjct: 413 FNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGR 472

Query: 210 SGAVDRAFDVLAE--------------------MNAEVH-------------PVDPDHIT 236
            G       VL+                     MN   +              V P+ +T
Sbjct: 473 CGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVT 532

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              L+  C    +  +A E +  + +  I  T EV +  I   S+ G    A S++  M 
Sbjct: 533 YTVLISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMK 592

Query: 297 KKGVIPDEVFLSALI---DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM------- 346
             G  PD +  +A++   +   H GK   A +++QE ++  I +  I+ S+LM       
Sbjct: 593 MAGCCPDIITFTAMLHAYNAGEHWGK---ACDLIQEMEDYDIQLDTIACSALMRAFNKRG 649

Query: 347 ----------------------------GACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
                                        ACS  ++W+  L L + M+      ++  +N
Sbjct: 650 NPSQVLILAEFMKEKEIPFSDAIFFEMVSACSLLRDWRTILNLMKLMEPSFSVVSIGLLN 709

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            L+  L    ++   M++   + + G   N  TYSI+L       +    + +L   ++ 
Sbjct: 710 QLLHVLGRSGKIESMMKLFYKITASGAEINFNTYSIMLKNLLAVGNWRKYIEVLEWMEDA 769

Query: 439 GVIPNLVMF 447
           G+ P++ M+
Sbjct: 770 GIQPSIGMY 778



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/431 (19%), Positives = 166/431 (38%), Gaps = 81/431 (18%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  ++  + SYN LI      G   E + + + ++  GLL  D V +    +     K  
Sbjct: 348 AEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLP-DVVSYTSLLSSYGRSKQP 406

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           K+A   F ++      P + +FN L+    S+     A +VLR +++ G+  +     TL
Sbjct: 407 KKAREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTL 466

Query: 134 ITTCAKSGK---VDAMFE--------------------------------VFHEMVNAGI 158
           +  C + G+   +DA+                                  +++ M    +
Sbjct: 467 LAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKV 526

Query: 159 EPNVHTYGALIDGC-----------------------------------AKAGQVAKAFG 183
            PN  TY  LI GC                                   +K GQ+ +A  
Sbjct: 527 APNSVTYTVLISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAES 586

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            + +M+     PD + F A++ A        +A D++ EM  E + +  D I   ALM+A
Sbjct: 587 IFTMMKMAGCCPDIITFTAMLHAYNAGEHWGKACDLIQEM--EDYDIQLDTIACSALMRA 644

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
               G   +   + + + +  I  +  ++   ++ CS   DW    ++   M     +  
Sbjct: 645 FNKRGNPSQVLILAEFMKEKEIPFSDAIFFEMVSACSLLRDWRTILNLMKLMEPSFSVVS 704

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
              L+ L+   G +GK+E+  ++  +    G  +   +YS ++       NW+K +E+ E
Sbjct: 705 IGLLNQLLHVLGRSGKIESMMKLFYKITASGAEINFNTYSIMLKNLLAVGNWRKYIEVLE 764

Query: 364 HMKSIKLKPTV 374
            M+   ++P++
Sbjct: 765 WMEDAGIQPSI 775



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 105/219 (47%), Gaps = 3/219 (1%)

Query: 240 LMKACANAGQVDRAREVYKMIH-KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           L+K     G ++ +  V++ +  + N     ++Y + I   ++    + A  ++ +M + 
Sbjct: 113 LIKEITQRGALEHSNLVFRWMKLQKNYCARTDMYNMMIRLHARHNLTDQARGLFFEMQEW 172

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
              PD    +ALI+  G AG+   A  I+++   + I     +Y++L+ AC ++ NW++A
Sbjct: 173 RCKPDSETYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREA 232

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           L++ + M    + P + T N +++A   G Q  K +     MK   + P+T T +I++  
Sbjct: 233 LKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYC 292

Query: 419 CERKDDVEVGLMLLSQAKEDGV--IPNLVMFKCIIGMCS 455
             +    E  + + +  +E      P++V F  II + S
Sbjct: 293 LVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYS 331



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 88/205 (42%), Gaps = 10/205 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNV--CKSQKAIKEAFRF 83
           LH+YN     G+  + I  +ED +    + +D +  +   R FN     SQ  I   F  
Sbjct: 607 LHAYNAGEHWGKACDLIQEMEDYD----IQLDTIACSALMRAFNKRGNPSQVLILAEFMK 662

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K +P      F M+ S C+  +D      +++L++ +       L   L+    +SGK+
Sbjct: 663 EKEIPFSDAIFFEMV-SACSLLRDWRTILNLMKLMEPSFSVVSIGLLNQLLHVLGRSGKI 721

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           ++M ++F+++  +G E N +TY  ++      G   K       M    ++P   ++  +
Sbjct: 722 ESMMKLFYKITASGAEINFNTYSIMLKNLLAVGNWRKYIEVLEWMEDAGIQPSIGMYYDI 781

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVH 228
            +   + G  + A  +   +  +++
Sbjct: 782 SSYVQKGGGAEYAAIIQERVGTQIY 806



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 58/299 (19%), Positives = 112/299 (37%), Gaps = 40/299 (13%)

Query: 67  FFNVCKSQKAIK--EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           + NV + +KA+    + R  K+ PN    T+ +L+S C        A +    + E  + 
Sbjct: 505 YMNVGEYEKAVALYNSMRKMKVAPNSV--TYTVLISGCCKMSKYGKAIEFFADMMELKIA 562

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
              ++ +++I   +K G++     +F  M  AG  P++ T+ A++          KA   
Sbjct: 563 LTKEVCSSVICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHAYNAGEHWGKACDL 622

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------------------ 226
              M   +++ D +  +AL+ A  + G   +   +LAE   E                  
Sbjct: 623 IQEMEDYDIQLDTIACSALMRAFNKRGNPSQVL-ILAEFMKEKEIPFSDAIFFEMVSACS 681

Query: 227 -----------VHPVDPDH--ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---E 270
                      +  ++P    ++IG L +     G+  +   + K+ +K    G      
Sbjct: 682 LLRDWRTILNLMKLMEPSFSVVSIGLLNQLLHVLGRSGKIESMMKLFYKITASGAEINFN 741

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            Y+I +      G+W     V + M   G+ P       +  +    G  E A  I+QE
Sbjct: 742 TYSIMLKNLLAVGNWRKYIEVLEWMEDAGIQPSIGMYYDISSYVQKGGGAEYA-AIIQE 799


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 174/364 (47%), Gaps = 5/364 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           PTL +FN++++          A  ++  ++  G+ A+   Y TLI    K GK+  M++ 
Sbjct: 161 PTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKA 220

Query: 149 --VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +  EM   GI PN  T+  LIDG  K   V+ A   +  M  + VKP+ V +N+LI  
Sbjct: 221 DAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLING 280

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
              +G V+ A  +  +M      + P+ IT  AL+        V +A E++  + K  I 
Sbjct: 281 LCNNGKVNEATALRDQMVNSC--LKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGIT 338

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y I I+   +  + E A ++Y  M  KGV PD    + LI      G +EAA  +
Sbjct: 339 PNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNL 398

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           + E   + +   +I+Y+ L+ +  N    +KAL L + M    LKP+  T N +I   C 
Sbjct: 399 VSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCK 458

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L   + + S M+ +G   N  TY++L+    +KD +E    LL++  E G+IPN + 
Sbjct: 459 EGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMT 518

Query: 447 FKCI 450
           ++ +
Sbjct: 519 YEIV 522



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 179/379 (47%), Gaps = 13/379 (3%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI-- 187
           +  +I    K GK++   ++  +M   G+  NV TY  LIDG  K G++ K + A  I  
Sbjct: 166 FNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILK 225

Query: 188 -MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            MR+  + P+ V FN LI    +   V  A  V AEMN +   V P+ +T  +L+    N
Sbjct: 226 EMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQ--GVKPNVVTYNSLINGLCN 283

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G+V+ A  +   +    +K     +   +N   +    + A  ++DDM K+G+ P+   
Sbjct: 284 NGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTT 343

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            + LID       +E AF + +    +G+   + +Y+ L+       + + A  L   M 
Sbjct: 344 YNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMD 403

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +  LK  + T N LI +LC+  ++ K + +L +M   GL P+ +TY+ ++    ++ ++ 
Sbjct: 404 TKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLR 463

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTS 484
             L L SQ ++ G + N+  +  +I G C + + E A  L   +L     +  I N+ T 
Sbjct: 464 AALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLE----KGLIPNRMT- 518

Query: 485 LALMVYREAIVAGTIPTVE 503
              +V  E +  G +P +E
Sbjct: 519 -YEIVTEEMMEKGFVPDIE 536



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 162/348 (46%), Gaps = 6/348 (1%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
            F+  +   + GLK        L++   K G++  M  V+ EM+   IEP + ++  +I+
Sbjct: 112 GFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVIN 171

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEV 227
           G  K G++ KA      M+ + V  + + +N LI      G+ G + +A  +L EM A+ 
Sbjct: 172 GLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRAD- 230

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + P+ +T   L+        V  A +V+  +++  +K     Y   IN     G    
Sbjct: 231 -GICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNE 289

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A ++ D M    + P+ +  +AL++       V+ A E+  +   QGI+  + +Y+ L+ 
Sbjct: 290 ATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILID 349

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           A    +N + A  LY  M    + P VST N LI  LC    L     ++S+M +  L  
Sbjct: 350 AYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKA 409

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           + ITY+IL+ +   K +++  L LL +    G+ P+ + +  +I G C
Sbjct: 410 DLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYC 457



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 169/391 (43%), Gaps = 47/391 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--------AIKEAFRFF 84
           N L + G++++  D++EDM+ +G+      Y+      CK  K        AI +  R  
Sbjct: 171 NGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRAD 230

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            + PN    TFN+L+      K+   A +V   +   G+K +   Y +LI     +GKV+
Sbjct: 231 GICPNEV--TFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVN 288

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  +MVN+ ++PN+ T+ AL++G  K   V +A   +  M  + + P+   +N LI
Sbjct: 289 EATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILI 348

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            A  +   ++ AF +   M  +   V PD  T   L+      G ++ AR +   +   +
Sbjct: 349 DAYCKDENMEDAFALYRIMLGK--GVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKH 406

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +K     Y I I+     G+ + A  + D+M +KG+ P ++  + +ID            
Sbjct: 407 LKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMID------------ 454

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
                                 G C    N + AL L   M+ +     V+T N LI   
Sbjct: 455 ----------------------GYCKEG-NLRAALNLRSQMEKVGRLANVATYNVLIKGF 491

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           C  D+L     +L++M   GL PN +TY I+
Sbjct: 492 CKKDKLEDANGLLNEMLEKGLIPNRMTYEIV 522



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 179/400 (44%), Gaps = 16/400 (4%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           N   S+  I ++ +    V  P LS  N           ++   Q+L  V      A+  
Sbjct: 44  NKTSSRSNIGQSSKPISRVQTPLLSFINY---------STQEQTQILLSVSGDSFCANSI 94

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +   L+   AK+ +    FE F    + G++ +V +   L+ G  K G++      Y  M
Sbjct: 95  IVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEM 154

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
             + ++P  + FN +I    + G +++A D++ +M  +V  V  + IT   L+      G
Sbjct: 155 IRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDM--KVRGVSANVITYNTLIDGYCKMG 212

Query: 249 QVDR---AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           ++ +   A  + K +    I      + I I+   +  +   A  V+ +M ++GV P+ V
Sbjct: 213 KIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVV 272

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 364
             ++LI+   + GKV  A  +  +  N  +   II++++L+ G C N K  ++A EL++ 
Sbjct: 273 TYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKN-KMVKQAGELFDD 331

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M    + P V+T N LI A C  + +     +   M   G+CP+  TY+ L+    RK D
Sbjct: 332 MPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGD 391

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
           +E    L+S+     +  +L+ +  +I     + E  + L
Sbjct: 392 LEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKAL 431



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 45/220 (20%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N++++Q       +L +DM ++G+      Y+      CK +  +++AF  ++++     
Sbjct: 319 NKMVKQAG-----ELFDDMPKQGITPNVTTYNILIDAYCKDEN-MEDAFALYRIMLGKGV 372

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +ST+N L++      D E A  ++  +    LKAD   Y  LI +    G++     
Sbjct: 373 CPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALR 432

Query: 149 VFHEMVNAGIEP-----------------------------------NVHTYGALIDGCA 173
           +  EM   G++P                                   NV TY  LI G  
Sbjct: 433 LLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFC 492

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           K  ++  A G    M  K + P+R+ +  +     + G V
Sbjct: 493 KKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFV 532


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 215/449 (47%), Gaps = 16/449 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-L 86
           YN L+    R G++     +L+ M+  G+      Y       C++ K ++EAF  ++ +
Sbjct: 207 YNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRT-KGVEEAFDLYEGM 265

Query: 87  VPNPTL---STFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           V N  L    T + L++ +C   + SE A+ + R + + G   +   Y TLI + AK+G+
Sbjct: 266 VRNGVLLDVVTLSALVAGLCRDGRFSE-AYALFREMDKVGAVPNHVTYCTLIDSLAKAGR 324

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
              +  +  EMV+ G+  ++ TY AL+D   K G+  +         S N+  + V +  
Sbjct: 325 GKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTV 384

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI A  ++  VD A  VL EM  E   + P+ +T  +++      G +D+A E  +M+ +
Sbjct: 385 LIDALCKAHNVDEAEQVLLEM--EEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKE 442

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I      Y   I+   +    + A  VY DM  +GV  ++  + +L++     GK+E 
Sbjct: 443 RGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGLRQNGKIEE 502

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  + ++A   G+S+  ++Y++L+     A +   A +  + +    + P     N  I 
Sbjct: 503 AMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFIN 562

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC   +  +   +L++M+++GL P+  TY+ ++V+  RK +    L LL + K   + P
Sbjct: 563 CLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKP 622

Query: 443 NLVMFKCIIG--MCSRRYEKAR-TLNEHV 468
           NL+ +  ++     +   EKA+  LNE V
Sbjct: 623 NLITYNTLVAGLFGTGAVEKAKYLLNEMV 651



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 198/460 (43%), Gaps = 44/460 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFFKLVPN 89
           + L + GR  E + LL +M  +G++ MD V +    +    Q     +K+  RF  L  N
Sbjct: 317 DSLAKAGRGKELLSLLGEMVSRGVV-MDLVTYTALMDWLGKQGKTDEVKDTLRF-ALSDN 374

Query: 90  PTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            +L+  T+ +L+     + + + A QVL  ++E  +  +   ++++I    K G +D   
Sbjct: 375 LSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKAT 434

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E    M   GI PNV TYG LIDG  K      A   Y  M  + V+ ++ + ++L+   
Sbjct: 435 EYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGL 494

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            Q+G ++ A  +  +  A    +  DH+    L+     AG +  A +  + +   N+  
Sbjct: 495 RQNGKIEEAMALFKD--ASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLP 552

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
              VY + INC    G ++ A S+  +M   G+ PD+   + +I      G+   A ++L
Sbjct: 553 DAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLL 612

Query: 328 QEAKNQGISVGIISYSSLMG-----------------------------------ACSNA 352
            E K   I   +I+Y++L+                                    ACS +
Sbjct: 613 HEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQS 672

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           +     L+++E M +  L   ++  N L+  LC      K   VL +M   G+ P+TIT+
Sbjct: 673 RRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITF 732

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           + L++   +   ++      +Q     + PN+  F  ++G
Sbjct: 733 NALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 180/422 (42%), Gaps = 21/422 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G+I E + L +D    GL  +D V +    +       +  AF+F + + +   
Sbjct: 492 NGLRQNGKIEEAMALFKDASGSGL-SLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNM 550

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P    +N+ ++ +C   K  E A  +L  ++  GLK D   Y T+I +  + G+     
Sbjct: 551 LPDAVVYNVFINCLCILGKFKE-AKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++ HEM  + I+PN+ TY  L+ G    G V KA      M S    P  +    ++ AC
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQAC 669

Query: 208 GQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            QS  +D   D+   M NA +H    D      L++     G   +A  V + +    I 
Sbjct: 670 SQSRRLDVILDIHEWMMNAGLHA---DITVYNTLLQVLCYHGMTRKATVVLEEMLGSGI- 725

Query: 267 GTPEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             P+  T    I  +C S   D  FA   Y  M  + + P+    + L+      G++  
Sbjct: 726 -APDTITFNALILGHCKSSHLDNAFA--TYAQMLHQNISPNIATFNTLLGGLESVGRIGE 782

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  +L E +  G+    ++Y  L+       N  +A+ LY  M      P VST NALI+
Sbjct: 783 AGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALIS 842

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVI 441
                  + +  E+  DM+  G+ P + TY IL+    R ++  EV    L   KE G  
Sbjct: 843 DFTKAGMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVK-KCLKDMKEKGFS 901

Query: 442 PN 443
           P+
Sbjct: 902 PS 903



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 151/343 (44%), Gaps = 2/343 (0%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E A  + +    +GL  D   YTTLI    K+G +   F+   E+++  + P+   Y   
Sbjct: 501 EEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVF 560

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I+     G+  +A      MR+  +KPD+  +N +I +  + G   +A  +L EM  ++ 
Sbjct: 561 INCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHEM--KMS 618

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + P+ IT   L+      G V++A+ +   +       +   +   +  CSQ+   +  
Sbjct: 619 SIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVI 678

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             +++ M   G+  D    + L+    + G    A  +L+E    GI+   I++++L+  
Sbjct: 679 LDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILG 738

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              + +   A   Y  M    + P ++T N L+  L    ++ +   VL +M+  GL PN
Sbjct: 739 HCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPN 798

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +TY IL+    ++ +    + L  +    G +P +  +  +I
Sbjct: 799 NLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALI 841



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 141/322 (43%), Gaps = 37/322 (11%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N L++      D+  A  V   +   GL  D   Y TL+    ++G+VDA   V   M 
Sbjct: 172 WNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMK 231

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            AG++PNV TY   I    +   V +AF  Y  M    V  D V  +AL+    + G   
Sbjct: 232 EAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFS 291

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A+ +  EM+ +V  V P+H+T   L+ + A AG   R +E+                  
Sbjct: 292 EAYALFREMD-KVGAV-PNHVTYCTLIDSLAKAG---RGKEL------------------ 328

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
                          S+  +M  +GV+ D V  +AL+D+ G  GK +   + L+ A +  
Sbjct: 329 --------------LSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDN 374

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +S+  ++Y+ L+ A   A N  +A ++   M+   + P V T +++I        L K  
Sbjct: 375 LSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKAT 434

Query: 395 EVLSDMKSLGLCPNTITYSILL 416
           E    MK  G+ PN +TY  L+
Sbjct: 435 EYKRMMKERGINPNVVTYGTLI 456



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 188/439 (42%), Gaps = 27/439 (6%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITAC 207
           V  EM   G+  +  T   L+ G  + GQV  A  A    R   +   D + +N LI   
Sbjct: 122 VLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAA--AALADRGGGIHALDVIGWNTLIAGY 179

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G    A  V   M A+  P+D   +    L+     AGQVD AR V  M+ +  +  
Sbjct: 180 CRVGDTPAALSVADRMTAQGLPMDV--VGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDP 237

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  I    +T   E A  +Y+ M + GV+ D V LSAL+      G+   A+ + 
Sbjct: 238 NVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALF 297

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E    G     ++Y +L+ + + A   ++ L L   M S  +   + T  AL+  L   
Sbjct: 298 REMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQ 357

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +  +  + L    S  L  N +TY++L+ A  +  +V+    +L + +E  + PN+V F
Sbjct: 358 GKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTF 417

Query: 448 KCII-GMCSR----------RYEKARTLNEHVLSFNS---GRPQIENKWTSLALMVYREA 493
             +I G   R          R  K R +N +V+++ +   G  + + +    AL VY + 
Sbjct: 418 SSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQ--DAALEVYHDM 475

Query: 494 IVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENLGVSADALKRSNLCSLIDG-FGEY 550
           +  G      +V  ++  L+   N  I E   L ++   S  +L   N  +LIDG F   
Sbjct: 476 LCEGVEVNKFIVDSLVNGLR--QNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAG 533

Query: 551 D-PRAFSLLEEAASFGIVP 568
           D P AF   +E     ++P
Sbjct: 534 DMPTAFKFGQELMDRNMLP 552



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 145/361 (40%), Gaps = 44/361 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    R+G  ++ + LL +M+   +      Y+     +  +    K  +   ++
Sbjct: 591 TYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEM 650

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V    +P+  T   ++  C+ S+  +    +   +  AGL AD  +Y TL+      G  
Sbjct: 651 VSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMT 710

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                V  EM+ +GI P+  T+ ALI G  K+  +  AF  Y  M  +N+ P+   FN L
Sbjct: 711 RKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTL 770

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +      G +  A  VL EM  E   ++P+++T                           
Sbjct: 771 LGGLESVGRIGEAGTVLIEM--EKSGLEPNNLT--------------------------- 801

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                   Y I +    +  +   A  +Y +M  KG +P     +ALI     AG +  A
Sbjct: 802 --------YDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQA 853

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E+ ++ + +G+     +Y  L+   S  +N  +  +  + MK     P+  T++ +  A
Sbjct: 854 KELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRA 913

Query: 384 L 384
            
Sbjct: 914 F 914



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 6/196 (3%)

Query: 273 TIAIN-CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           T+A N   +   D   A +V  +M K+GV  D V ++ L+      G+V+AA  +    +
Sbjct: 103 TVAYNILLAALSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD--R 160

Query: 332 NQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             GI ++ +I +++L+       +   AL + + M +  L   V   N L+   C   Q+
Sbjct: 161 GGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQV 220

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                VL  MK  G+ PN  TY+  +V   R   VE    L      +GV+ ++V    +
Sbjct: 221 DAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSAL 280

Query: 451 I-GMCSR-RYEKARTL 464
           + G+C   R+ +A  L
Sbjct: 281 VAGLCRDGRFSEAYAL 296


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 141/327 (43%), Gaps = 39/327 (11%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   YT +I+ C     VD   ++  EM    IE NVHTY AL++ C K G    A   Y
Sbjct: 209 DVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTY 268

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKAC 244
             MR     P+ V +N LI   G+ G  ++   VL  M  E V PV              
Sbjct: 269 NHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPV-------------- 314

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
                          +  YN         IA N C Q  +   A +VY  M  +G  P+ 
Sbjct: 315 ---------------LRTYN------TLIIACNMCGQPRE---AMAVYKRMLDEGYSPNA 350

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
              +ALI   G AG+++   E+ QE  ++G    +I+YSSL+ AC  A  W+ ALEL+  
Sbjct: 351 TTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNE 410

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M      P   T N+LITA   G Q  K  EV   M+  G  P+ +T++ L+ + E+   
Sbjct: 411 MAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQ 470

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII 451
               L    Q +     P+ ++F  II
Sbjct: 471 WRRALGAYEQMRLQRCKPDAIVFNAII 497



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 154/313 (49%), Gaps = 10/313 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+  ++S+C   +D + A  + + ++   ++ +   YT L+  C K G      + ++ M
Sbjct: 212 TYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHM 271

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G  PNV TY  LID   K G   +      +M+++ V+P    +N LI AC   G  
Sbjct: 272 RQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQP 331

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVY 272
             A  V   M  E +   P+  T  AL+ A   AGQ+D+  EV++ M+HK   + +   Y
Sbjct: 332 REAMAVYKRMLDEGY--SPNATTYNALISAYGKAGQLDKVMEVFQEMVHK-GCERSVITY 388

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +  I+ C + G WE A  ++++M  +G IP+ V  ++LI       + E A E+ ++ + 
Sbjct: 389 SSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQK 448

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G +  ++++++L+ +      W++AL  YE M+  + KP     NA+I      D L +
Sbjct: 449 GGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAII------DTLWE 502

Query: 393 TMEVLSDMKSLGL 405
           T  + +  K+L L
Sbjct: 503 TGVIWAQRKALAL 515



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 5/256 (1%)

Query: 217 FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           F+ L  ++A  HP+    D  T  A++  C     VDRA ++ K +   NI+     YT 
Sbjct: 192 FEWLRNLDAN-HPLASLCDVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTA 250

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            +N C + G+   A   Y+ M + G  P+ V  + LID  G  G  E   ++L   K +G
Sbjct: 251 LMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEG 310

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +   + +Y++L+ AC+     ++A+ +Y+ M      P  +T NALI+A     QL K M
Sbjct: 311 VEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVM 370

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           EV  +M   G   + ITYS L+ ACE+    E+ L L ++   +G IPN V +  +I  C
Sbjct: 371 EVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITAC 430

Query: 455 SR--RYEKARTLNEHV 468
           ++  ++EKA  + E +
Sbjct: 431 AQGAQWEKASEVFEQM 446



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 11/269 (4%)

Query: 23  HDVSEQLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            ++   +H+Y  L    I+ G     +D    M + G    + V +    +V       +
Sbjct: 239 RNIERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACP-NVVTYNTLIDVYGKMGLWE 297

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +  +   L+      P L T+N L+  C        A  V + + + G   +   Y  LI
Sbjct: 298 QGIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALI 357

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +   K+G++D + EVF EMV+ G E +V TY +LI  C KAGQ   A   +  M  +   
Sbjct: 358 SAYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMAGEGCI 417

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ V +N+LITAC Q    ++A +V  +M  +     PD +T  AL+ +    GQ  RA 
Sbjct: 418 PNTVTYNSLITACAQGAQWEKASEVFEQM--QKGGCTPDVVTFTALISSYEKGGQWRRAL 475

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
             Y+ +     K    V+   I+   +TG
Sbjct: 476 GAYEQMRLQRCKPDAIVFNAIIDTLWETG 504


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 187/424 (44%), Gaps = 5/424 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
            +R+G   E   ++++M   G+      Y      +CK  +  + +    ++V +   P 
Sbjct: 232 FMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPD 291

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+N+++       + + AF++L  ++ AG+  +   Y+ +I    +SG+ +   ++  
Sbjct: 292 TITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLE 351

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   G++PN   Y  LI G  + G V+ A   +  M   NV PD   +N+LI    + G
Sbjct: 352 EMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 411

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V+ +    A+M  +   + P+  T   L+      G ++ A ++ + +    +K    +
Sbjct: 412 RVEESTKYFAQM--QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 469

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +    ++ D E   S +  M  +GV+ D      LI     +G +EAAF +L E +
Sbjct: 470 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIE 529

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G    +  YSSL+       + +KA  + + M    + P +   NALI  LC    + 
Sbjct: 530 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 589

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               V + + + GL PN +TY+ L+    +  D+     L ++    G+ P+  ++  + 
Sbjct: 590 YARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLT 649

Query: 452 GMCS 455
             CS
Sbjct: 650 TGCS 653



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 195/414 (47%), Gaps = 5/414 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-AIKEAFRFFKLVP--NPTLS 93
           + GR+ +  +++  M  +GL    +  +A   ++ ++   A+    R F +    +P + 
Sbjct: 59  KSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVY 118

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ L+      ++ + A +VL  ++E G   +   Y  LI    +SG V+  F    +M
Sbjct: 119 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 178

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            + G+ P+  TYGALI+G  K+ +  +A      M    +KP+ VV+  LI    + G  
Sbjct: 179 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNA 238

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D AF ++ EM A    V P+ IT   L++     GQ+DRA  + K + + + +     Y 
Sbjct: 239 DEAFKMIKEMVAA--GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYN 296

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           + I    +  + + A  +  +M   G+ P+    S +I     +G+ E A ++L+E   +
Sbjct: 297 LIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTK 356

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+      Y+ L+       N   A E+++ M  + + P +   N+LI  L    ++ ++
Sbjct: 357 GLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEES 416

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +  + M+  GL PN  TYS L+    +  D+E    L+ +  + G+ PN V++
Sbjct: 417 TKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 470



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 165/359 (45%), Gaps = 2/359 (0%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +  ++L+     S   + A +V+ ++++ GL    +    L+    ++  +  +++V   
Sbjct: 48  AVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREF 107

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV AGI P+V+TY  LI+   K  +   A      MR +    + V +N LI    +SGA
Sbjct: 108 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 167

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V+ AF    +M  E + + PD  T GAL+     + + + A+ +   +    +K    VY
Sbjct: 168 VEEAFGFKKDM--EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVY 225

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+   + G+ + A  +  +M   GV P+++    L+      G+++ A  +L++   
Sbjct: 226 ANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVR 285

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
                  I+Y+ ++       N + A  L   M++  + P V T + +I  LC   +  K
Sbjct: 286 DSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEK 345

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             ++L +M + GL PN   Y+ L+    R+ +V +   +  +  +  V+P+L  +  +I
Sbjct: 346 ASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLI 404



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/440 (23%), Positives = 169/440 (38%), Gaps = 61/440 (13%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKA 76
           +V   L+ YN LI    + GR+ E       M+ +GLL  +  Y        K+   + A
Sbjct: 392 NVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESA 451

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            +   R       P    +  L+     S D E      + + + G+  D ++Y  LI  
Sbjct: 452 EQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHN 511

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
            + SG ++A F V  E+   G  P+VH Y +LI G  K     KAFG    M  K V P+
Sbjct: 512 LSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPN 571

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +NALI    +SG +  A +V   + A+   + P+ +T  +L+      G +  A  +
Sbjct: 572 IVCYNALIDGLCKSGDISYARNVFNSILAK--GLVPNCVTYTSLIDGSCKVGDISNAFYL 629

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM--------------------- 295
           Y  +    I     VY++    CS  GD E A  + ++M                     
Sbjct: 630 YNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKR 689

Query: 296 -------------TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
                          +G++P+ + +  +I     AGK+     I  E + +        +
Sbjct: 690 GKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHF 749

Query: 343 SSL-MGACSNAK-----------------NWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           SSL M   +  K                 N  KAL L + + +       S+  A++  L
Sbjct: 750 SSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNL 809

Query: 385 CDGDQLPKTMEVLSDMKSLG 404
           C   +L + + +L +M   G
Sbjct: 810 CRKGKLSEALNLLKEMDKRG 829



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 155/372 (41%), Gaps = 49/372 (13%)

Query: 45  IDLLE------DMER-----KGLLDMDKVYHARFFNVC----KSQKAIKEAFRFFKLVPN 89
           IDLLE      D+E+     K +LD   +   R + +      S   ++ AFR    +  
Sbjct: 471 IDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEK 530

Query: 90  ----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P +  ++ L+S    + D E AF +L  + + G+  +   Y  LI    KSG +  
Sbjct: 531 NGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISY 590

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              VF+ ++  G+ PN  TY +LIDG  K G ++ AF  Y  M +  + PD  V++ L T
Sbjct: 591 ARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTT 650

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
            C  +G +++A  ++ EM          H +I +         +  + +E  K++H    
Sbjct: 651 GCSSAGDLEQAMFLIEEMFLR------GHASISSFNNLVDGFCKRGKMQETLKLLHVIMG 704

Query: 266 KG--------------------TPEVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPD 303
           +G                      EV+TI +    +T +       S++ DM  +G IP 
Sbjct: 705 RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPL 764

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
           +V    + D     G ++ A  +      +   +G  SY +++          +AL L +
Sbjct: 765 DVVDDMIRDHC-KEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLK 823

Query: 364 HM-KSIKLKPTV 374
            M K   L+PT+
Sbjct: 824 EMDKRGNLQPTL 835



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 134/303 (44%), Gaps = 4/303 (1%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+D   K+G+V  A     +MR + + P     NAL+    ++ A+   + V   M    
Sbjct: 53  LVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGA- 111

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD  T   L++A     + D A++V   + +         Y + I    ++G  E 
Sbjct: 112 -GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 170

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A     DM   G++PD     ALI+    + +   A  +L E     +   ++ Y++L+ 
Sbjct: 171 AFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 230

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                 N  +A ++ + M +  ++P   T + L+  LC   Q+ +   +L  M      P
Sbjct: 231 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 290

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLN 465
           +TITY++++    R  + +    LLS+ +  G+ PN+  +  +I G+C S   EKA  L 
Sbjct: 291 DTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLL 350

Query: 466 EHV 468
           E +
Sbjct: 351 EEM 353



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 77/184 (41%)

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +P V  + ++   ++G  + A  V   M  +G+ P     +AL+     A  +   +++ 
Sbjct: 46  SPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVR 105

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +     GIS  + +YS+L+ A    + +  A ++   M+         T N LI  LC  
Sbjct: 106 EFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRS 165

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             + +      DM+  GL P+  TY  L+    +         LL +     + PN+V++
Sbjct: 166 GAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVY 225

Query: 448 KCII 451
             +I
Sbjct: 226 ANLI 229


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 203/439 (46%), Gaps = 39/439 (8%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+  +++YN L+R    +GR+ E + ++ DM   G                       
Sbjct: 4   HGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGC---------------------- 41

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTC 137
                      P   T+N L++    + + +GA +V+ L++E G  K +   + +++   
Sbjct: 42  ----------APNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGL 91

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K+G+++   +VF EMV  G+ P+V +Y  L+ G  K G + ++   +  M  + + PD 
Sbjct: 92  CKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDV 151

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V F +LI A  ++G +++A  ++A+M      +  + +T  AL+      G +D A    
Sbjct: 152 VTFTSLIHATCKAGNLEQAVALVAQMRE--RGLRMNEVTFTALIDGFCKKGFLDDALLAV 209

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + + K  I+ +   Y   IN   + G  + A  +  +M  K V PD V  S +I      
Sbjct: 210 EEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKV 269

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G +++AF++ Q+   +G+    I+YSSL+      K    A EL+E+M  + ++P   T 
Sbjct: 270 GNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTY 329

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LI   C    + K + +  +M   G+ P+ +TYS+L+    +    +    LL +   
Sbjct: 330 TTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYH 389

Query: 438 DGVIPNLVMFKCIIGMCSR 456
           +  +P+ + +  ++  CS+
Sbjct: 390 EDPVPDNIKYDALMLCCSK 408



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 188/383 (49%), Gaps = 6/383 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N+L+    +    E A  V+  ++ AG   +   Y TL+    ++G++D    V
Sbjct: 8   PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 67

Query: 150 FHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              M   G  +PN+ T+ ++++G  KAG++  A   +  M  + + PD V +N L++   
Sbjct: 68  VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYC 127

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  +  V +EM      + PD +T  +L+ A   AG +++A  +   + +  ++  
Sbjct: 128 KVGCLHESLAVFSEMTQ--RGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 185

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +T  I+   + G  + A    ++M K G+ P  V  +ALI+     G+++ A E+++
Sbjct: 186 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 245

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E + + +   +++YS+++       N   A +L + M    + P   T ++LI  LC+  
Sbjct: 246 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 305

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L    E+  +M  LG+ P+  TY+ L+    ++ +VE  L L  +    GV+P++V + 
Sbjct: 306 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 365

Query: 449 CIIGMCSRRYEKARTLNEHVLSF 471
            +I   S+    ART   H L F
Sbjct: 366 VLINGLSK---SARTKEAHRLLF 385



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 185/374 (49%), Gaps = 17/374 (4%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV  G+ PNV+TY  L+      G++ +A G  G MR     P+ V +N L+ A  ++G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A  V++ M  E +   P+ +T  +++     AG+++ AR+V+  + +  +      Y
Sbjct: 61  LDGAERVVSLMREEGN-AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSY 119

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              ++   + G    + +V+ +MT++G++PD V  ++LI     AG +E A  ++ + + 
Sbjct: 120 NTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE 179

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G+ +  +++++L+           AL   E M+   ++P+V   NALI   C   ++  
Sbjct: 180 RGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDL 239

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
             E++ +M++  + P+ +TYS ++    +  +++    L  +  + GV+P+ + +  +I 
Sbjct: 240 ARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIR 299

Query: 452 GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGT 498
           G+C  +R   A  L E++L    G    E  +T+L            AL ++ E I  G 
Sbjct: 300 GLCEEKRLNDACELFENMLQL--GVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGV 357

Query: 499 IPTVEVVSKVLGCL 512
           +P V   S ++  L
Sbjct: 358 LPDVVTYSVLINGL 371



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 186/404 (46%), Gaps = 23/404 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + GR+     + ++M R+GL      Y+      CK    + E+   F  +     
Sbjct: 89  NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKV-GCLHESLAVFSEMTQRGL 147

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + TF  L+     + + E A  ++  ++E GL+ +   +T LI    K G +D    
Sbjct: 148 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 207

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EM   GI+P+V  Y ALI+G  K G++  A      M +K VKPD V ++ +I+   
Sbjct: 208 AVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 267

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +D AF +  +M  +   V PD IT  +L++      +++ A E+++ + +  ++  
Sbjct: 268 KVGNLDSAFQLNQKMLKK--GVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 325

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  I+   + G+ E A S++D+M +KGV+PD V  S LI+    + + + A  +L 
Sbjct: 326 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 385

Query: 329 EAKNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPT 373
           +  ++      I Y +LM  CS A+                 ++A ++Y+ M     K  
Sbjct: 386 KLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLD 445

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
            S  + LI   C G  + K +     M   G  PN+ T +I LV
Sbjct: 446 GSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNS-TSTISLV 488



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 20/311 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAFRFFKLVP-NPTLS 93
           ++G + + +  +E+M + G+      Y+A     CK  +    +E  R  +     P + 
Sbjct: 198 KKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV 257

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ ++S      + + AFQ+ + + + G+  D   Y++LI    +  +++   E+F  M
Sbjct: 258 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 317

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +  G++P+  TY  LIDG  K G V KA   +  M  K V PD V ++ LI    +S   
Sbjct: 318 LQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSART 377

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---------------GQVDRAREVYK 258
             A  +L ++  E  PV PD+I   ALM  C+ A               G +  A +VY+
Sbjct: 378 KEAHRLLFKLYHE-DPV-PDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQ 435

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +   N K    VY+I I+   + G+   A S +  M + G  P+     +L+      G
Sbjct: 436 SMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEG 495

Query: 319 KVEAAFEILQE 329
            V  A   +Q+
Sbjct: 496 MVVEADNAIQD 506


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/378 (28%), Positives = 183/378 (48%), Gaps = 14/378 (3%)

Query: 73  SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           SQ ++  +F  +  KL   P++ TF  L++  C   +  +  +   ++V   G K +  +
Sbjct: 130 SQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG-MGYKPNVVI 188

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y T+I    KS +VD   ++ + M   GI P+V TY +LI G   +G+ + A      M 
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT 248

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            + + PD   FNALI AC + G V  A +   EM      +DPD +T   L+       +
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR--SLDPDIVTYSLLIYGLCMYSR 306

Query: 250 VDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           +D A E++  +     KG  P+V  Y+I IN   ++   E    ++ +M+++GV+ + V 
Sbjct: 307 LDEAEEMFGFMVS---KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVT 363

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM 365
            + LI     AGK+  A EI +     G+   II+Y+ L+ G C N K  +KAL +   M
Sbjct: 364 YTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGK-IEKALVILADM 422

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           +   +   + T N +I  +C   ++    ++   +   GL P+  TY+ +++   +K   
Sbjct: 423 QKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLR 482

Query: 426 EVGLMLLSQAKEDGVIPN 443
                L  + KEDG++PN
Sbjct: 483 READALFRKMKEDGILPN 500



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 159/357 (44%), Gaps = 2/357 (0%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L T N+L++          A   L  + + G +     + +L+    +  +V     +F
Sbjct: 115 NLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMF 174

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +MV  G +PNV  Y  +IDG  K+ QV  A      M    + PD V +N+LI+    S
Sbjct: 175 DQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSS 234

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G    A  +++ M      + PD  T  AL+ AC   G+V  A E Y+ + + ++     
Sbjct: 235 GRWSDATRMVSCMTKR--EIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIV 292

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y++ I         + A  ++  M  KG  PD V  S LI+    + KVE   ++  E 
Sbjct: 293 TYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM 352

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +G+    ++Y+ L+     A     A E++  M    + P + T N L+  LCD  ++
Sbjct: 353 SQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKI 412

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            K + +L+DM+  G+  + +TY+I++    +  +V     +       G++P++  +
Sbjct: 413 EKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTY 469



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 176/378 (46%), Gaps = 10/378 (2%)

Query: 83  FFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           FF +V   P P+++ F+ L+S  +  K  +    +   +Q  G+  +      L+    +
Sbjct: 69  FFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCR 128

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
             ++        +M+  G EP++ T+G+L++G  +  +V  A   +  M     KP+ V+
Sbjct: 129 CSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVI 188

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +N +I    +S  VD A D+L  M  E   + PD +T  +L+    ++G+   A  +   
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRM--EKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSC 246

Query: 260 IHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + K  I   P+V+T    I+ C + G    A   Y++M ++ + PD V  S LI      
Sbjct: 247 MTKREI--YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMY 304

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            +++ A E+     ++G    +++YS L+     +K  +  ++L+  M    +     T 
Sbjct: 305 SRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTY 364

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LI   C   +L    E+   M   G+ PN ITY++LL        +E  L++L+  ++
Sbjct: 365 TILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQK 424

Query: 438 DGVIPNLVMFKCII-GMC 454
           +G+  ++V +  II GMC
Sbjct: 425 NGMDADIVTYNIIIRGMC 442



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 142/339 (41%), Gaps = 34/339 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L +  ++   +DLL  ME+ G+                                 P + T
Sbjct: 196 LCKSKQVDNALDLLNRMEKDGI--------------------------------GPDVVT 223

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N L+S   SS     A +++  + +  +  D   +  LI  C K G+V    E + EM+
Sbjct: 224 YNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMI 283

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
              ++P++ TY  LI G     ++ +A   +G M SK   PD V ++ LI    +S  V+
Sbjct: 284 RRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVE 343

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
               +  EM+     V  + +T   L++    AG+++ A E+++ +    +      Y +
Sbjct: 344 HGMKLFCEMSQ--RGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNV 401

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            ++     G  E A  +  DM K G+  D V  + +I     AG+V  A++I      QG
Sbjct: 402 LLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQG 461

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
           +   I +Y+++M         ++A  L+  MK   + P 
Sbjct: 462 LMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 139/326 (42%), Gaps = 3/326 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  ++    +  K+D   ++F  MV     P++  +  L+   +K  +       +  M+
Sbjct: 49  YREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQ 108

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
              +  +    N L+    +   +  A   L +M    H  +P  +T G+L+       +
Sbjct: 109 MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGH--EPSIVTFGSLLNGFCRGDR 166

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           V  A  ++  +     K    +Y   I+   ++   + A  + + M K G+ PD V  ++
Sbjct: 167 VYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNS 226

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     +G+   A  ++     + I   + ++++L+ AC       +A E YE M    
Sbjct: 227 LISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRS 286

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           L P + T + LI  LC   +L +  E+   M S G  P+ +TYSIL+    +   VE G+
Sbjct: 287 LDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGM 346

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMC 454
            L  +  + GV+ N V +  +I G C
Sbjct: 347 KLFCEMSQRGVVRNTVTYTILIQGYC 372



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/286 (23%), Positives = 136/286 (47%), Gaps = 13/286 (4%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN LI      GR S+   ++  M ++ +      ++A   + C  +  + EA  F+  
Sbjct: 223 TYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNA-LIDACVKEGRVSEAEEFYEE 281

Query: 85  --KLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             +   +P + T+++L+  +C  S+  E A ++   +   G   D   Y+ LI    KS 
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDE-AEEMFGFMVSKGCFPDVVTYSILINGYCKSK 340

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KV+   ++F EM   G+  N  TY  LI G  +AG++  A   +  M    V P+ + +N
Sbjct: 341 KVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYN 400

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            L+     +G +++A  +LA+M  + + +D D +T   +++    AG+V  A ++Y  ++
Sbjct: 401 VLLHGLCDNGKIEKALVILADM--QKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLN 458

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
              +      YT  +    + G    A +++  M + G++P+E ++
Sbjct: 459 CQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPNECYV 504


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 185/407 (45%), Gaps = 11/407 (2%)

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFK-LVPN---PTLSTFNMLMSVCASSKDSEGAFQVL 115
           D V +    N       + +A R  + +V N   P + ++N ++     +   E A  +L
Sbjct: 43  DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 102

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
             +   G   D   YTT+I    K  +VD    V  +M+  G +PNV TYG L+DG  + 
Sbjct: 103 EQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 162

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G +  A      M  +  +P+ + +N ++        +D A  +  EM  E     PD  
Sbjct: 163 GDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEME-ESGSCPPDVF 221

Query: 236 TIGALMKACANAGQVDRA-REVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVY 292
           T   ++ +   +G+VD A R V  M+ K     +P V  Y+  ++   + G  + A ++ 
Sbjct: 222 TYSTIVDSLVKSGKVDDACRLVEAMVSK---GCSPNVVTYSSLLHGLCKAGKLDEATALL 278

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
             MT+ G  P+ V  + +ID     G+++ A+ +L+E  + G    +++Y+ L+ A    
Sbjct: 279 QRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKC 338

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
              + A+ L E M      P + T N+L+   C  D++ +  ++LS M   G  PN ++Y
Sbjct: 339 GKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSY 398

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           + ++    +   V  G++LL Q   +  +P++V F  II    + Y 
Sbjct: 399 NTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYR 445



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 178/402 (44%), Gaps = 16/402 (3%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN +I    + GRI E   LLE+M   G       Y       CK  KA ++A 
Sbjct: 287 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKA-EDAI 345

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              +++      P L T+N L+ +     + E A Q+L  + + G   +   Y T+I   
Sbjct: 346 GLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 405

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K+ KV     +  +M++    P++ T+  +ID   K  +V  A+  + +++     P+ 
Sbjct: 406 CKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNL 465

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V +N+L+    +S   D+A  +L EM  +     PD IT   ++     + +VDRA +++
Sbjct: 466 VTYNSLVHGLCKSRRFDQAEYLLREMTRK-QGCSPDIITYNTVIDGLCKSKRVDRAYKLF 524

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEF---ACSVYDDMTKKGVIPDEVFLSALIDFA 314
             +    +      Y+I I   S    W F   A +V + M K G  P  +    LID  
Sbjct: 525 LQMLSDGLAPDDVTYSIVI---SSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGF 581

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G ++ A EILQ   ++G    ++++S  +   S     ++A EL E M    L P  
Sbjct: 582 CKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDT 641

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            T N L+   CD  +    +++   M+  G  P+  TY+ L+
Sbjct: 642 VTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV 683



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 153/338 (45%), Gaps = 3/338 (0%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   Y T+I   +KS ++D    +  EMV+ G  PNV +Y  ++ G  KA +V  A    
Sbjct: 43  DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 102

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M  +   PD V +  +I    +   VD A  V+ +M        P+ IT G L+    
Sbjct: 103 EQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQ--RGCQPNVITYGTLVDGFC 160

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
             G +D A E+ + + +   +     Y   ++        + A  ++ +M + G  P +V
Sbjct: 161 RVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDV 220

Query: 306 F-LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           F  S ++D    +GKV+ A  +++   ++G S  +++YSSL+     A    +A  L + 
Sbjct: 221 FTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQR 280

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M      P + T N +I   C   ++ +   +L +M   G  PN +TY++LL A  +   
Sbjct: 281 MTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGK 340

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
            E  + L+    E G +PNL  +  ++ M  ++ E  R
Sbjct: 341 AEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVER 378



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 197/437 (45%), Gaps = 13/437 (2%)

Query: 31  SYNRLIR---QGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN ++     GR +   + L ++ME  G    D   ++   +       + +A R  + 
Sbjct: 186 TYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEA 245

Query: 87  VPN----PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +    P + T++ +L  +C + K  E A  +L+ +  +G   +   Y T+I    K G
Sbjct: 246 MVSKGCSPNVVTYSSLLHGLCKAGKLDE-ATALLQRMTRSGCSPNIVTYNTIIDGHCKLG 304

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++D  + +  EMV+ G +PNV TY  L+D   K G+   A G   +M  K   P+   +N
Sbjct: 305 RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYN 364

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +L+    +   V+RA  +L+ M  +     P+ ++   ++     A +V     + + + 
Sbjct: 365 SLLDMFCKKDEVERACQLLSSMIQK--GCVPNVVSYNTVIAGLCKATKVHEGVLLLEQML 422

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
             N       +   I+   +T   + A  +++ + + G  P+ V  ++L+     + + +
Sbjct: 423 SNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFD 482

Query: 322 AAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            A  +L+E  + QG S  II+Y++++     +K   +A +L+  M S  L P   T + +
Sbjct: 483 QAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIV 542

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I++LC    + +   VL  M   G  P  ITY  L+    +  +++  L +L      G 
Sbjct: 543 ISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGS 602

Query: 441 IPNLVMFKCIIGMCSRR 457
            P++V F   I   S+R
Sbjct: 603 YPDVVTFSIFIDWLSKR 619



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 184/432 (42%), Gaps = 11/432 (2%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           S  LH    L + G++ E   LL+ M R G       Y+      CK  + I EA+   +
Sbjct: 259 SSLLHG---LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGR-IDEAYHLLE 314

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + +    P + T+ +L+        +E A  ++ ++ E G   +   Y +L+    K  
Sbjct: 315 EMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKD 374

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +V+   ++   M+  G  PNV +Y  +I G  KA +V +       M S N  PD V FN
Sbjct: 375 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 434

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MI 260
            +I A  ++  VD A+++   +        P+ +T  +L+     + + D+A  + + M 
Sbjct: 435 TIIDAMCKTYRVDIAYELFNLIQES--GCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMT 492

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            K         Y   I+   ++   + A  ++  M   G+ PD+V  S +I        +
Sbjct: 493 RKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFM 552

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A  +L+     G   G I+Y +L+       N  KALE+ + + S    P V T +  
Sbjct: 553 DEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIF 612

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I  L    +L +  E+L  M   GL P+T+TY+ LL         E  + L    ++ G 
Sbjct: 613 IDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGC 672

Query: 441 IPNLVMFKCIIG 452
            P+   +  ++G
Sbjct: 673 EPDNATYTTLVG 684



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 160/367 (43%), Gaps = 45/367 (12%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L +YN L+    ++  +     LL  M +KG +     Y+     +CK+ K  +     
Sbjct: 359 NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLL 418

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +++ N   P + TFN ++     +   + A+++  L+QE+G   +   Y +L+    KS
Sbjct: 419 EQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKS 478

Query: 141 GKVDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            + D    +  EM    G  P++ TY  +IDG  K+ +V +A+  +  M S  + PD V 
Sbjct: 479 RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVT 538

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           ++ +I++  +   +D A +VL  M    +  DP  IT G L+      G +D+A E+ ++
Sbjct: 539 YSIVISSLCKWRFMDEANNVLELMLK--NGFDPGAITYGTLIDGFCKTGNLDKALEILQL 596

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
                                              +  KG  PD V  S  ID+    G+
Sbjct: 597 -----------------------------------LLSKGSYPDVVTFSIFIDWLSKRGR 621

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +  A E+L+     G+    ++Y++L+    +A   + A++L+E M+    +P  +T   
Sbjct: 622 LRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTT 681

Query: 380 LITALCD 386
           L+  L D
Sbjct: 682 LVGHLVD 688


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 180/370 (48%), Gaps = 5/370 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++N+L+    ++ + E   +    ++      +   Y T+I    K  ++D  F++   M
Sbjct: 205 SYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM 264

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G+EPN+ TY  +I+G  + G++ +  G    M  K   PD V +N L+    + G  
Sbjct: 265 GLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNF 324

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            +A  + +EM     P  PD +T  +L+     AG ++RA E +  +H   ++     YT
Sbjct: 325 HQALVLHSEMLRNGLP--PDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYT 382

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             IN  SQ G  + A  ++D+M + G  P  V  +AL++    +G++E A  +L+  + +
Sbjct: 383 SLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGK 442

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+S  ++SYS+++      +   +A ++   M    + P   T ++LI  LC+  +L + 
Sbjct: 443 GLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEA 502

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
            ++  +M +  L P+  TY+ L+    ++ D+   L L  +  + G +P+ V +  +I  
Sbjct: 503 CDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLING 562

Query: 454 CSRRYEKART 463
            ++   +ART
Sbjct: 563 LNK---QART 569



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 188/438 (42%), Gaps = 38/438 (8%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  VS  + SYN LIR     G +   +   E+MER   L                    
Sbjct: 196 ASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCL-------------------- 235

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+N ++      K  + AF++LR +   GL+ +   Y  +I   
Sbjct: 236 ------------PNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGL 283

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            + G+++    V  EM   G  P+  TY  L++G  K G   +A   +  M    + PD 
Sbjct: 284 CRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDV 343

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V + +LI    ++G ++RA +   +M+  V  + P+ +T  +L+   +  G +D A  ++
Sbjct: 344 VTYTSLINTMCKAGNLNRAMEFFDQMH--VRGLRPNGVTYTSLINGFSQKGFMDEAYRIW 401

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             + +     T   Y   +N    +G  E A  +   M  KG+ PD V  S +I      
Sbjct: 402 DEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRY 461

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            +++ AF++  E   +G+S   I+YSSL+      +   +A +L++ M +  L P   T 
Sbjct: 462 QELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTY 521

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
            +LI   C    L + + +  +M   G  P+T+TY++L+    ++        LL +   
Sbjct: 522 TSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFY 581

Query: 438 DGVIPNLVMFKCIIGMCS 455
           D  IPN + +  +I  CS
Sbjct: 582 DESIPNGITYDTLIESCS 599



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 190/405 (46%), Gaps = 22/405 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R GRI E   +L +M+RKG       Y+      CK     +      +++ N   
Sbjct: 281 NGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLP 340

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  L++    + +   A +    +   GL+ +   YT+LI   ++ G +D  + +
Sbjct: 341 PDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRI 400

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           + EM+ +G  P + TY AL++G   +G++ +A G    M  K + PD V ++ +I    +
Sbjct: 401 WDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR 460

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +DRAF + AEM  +   V PD IT  +L++      +++ A ++++ +   ++    
Sbjct: 461 YQELDRAFQMNAEMVEK--GVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDE 518

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQ 328
             YT  IN   + GD   A +++D+M KKG +PD V  + LI+     A   EA   +L+
Sbjct: 519 FTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLK 578

Query: 329 EAKNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPT 373
              ++ I  GI +Y +L+ +CS+ +                  +A +++E M     KP 
Sbjct: 579 LFYDESIPNGI-TYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPN 637

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            +  N +I   C    + K  ++  +M   G  P+T+T   L+ A
Sbjct: 638 EAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKA 682



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 166/379 (43%), Gaps = 3/379 (0%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + ++N ++ S+    K    A +V R +  +G+  +   Y  LI     +G ++    
Sbjct: 165 PGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLR 224

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F EM      PNV TY  +I    K  ++ +AF     M  + ++P+ + +N +I    
Sbjct: 225 FFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLC 284

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G ++    VLAEM+ +     PD +T   L+      G   +A  ++  + +  +   
Sbjct: 285 RVGRIEETSGVLAEMDRK--GFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPD 342

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  IN   + G+   A   +D M  +G+ P+ V  ++LI+     G ++ A+ I  
Sbjct: 343 VVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWD 402

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E    G    I++Y++L+     +   ++A+ L   M+   L P V + + +I   C   
Sbjct: 403 EMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQ 462

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L +  ++ ++M   G+ P+ ITYS L+     +  +     L  +     ++P+   + 
Sbjct: 463 ELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYT 522

Query: 449 CIIGMCSRRYEKARTLNEH 467
            +I    +  +    LN H
Sbjct: 523 SLINGYCKEGDLNEALNLH 541



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 38/217 (17%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS------- 73
           VS    +Y+ LI+    Q R++E  DL ++M  K LL  +  Y +     CK        
Sbjct: 479 VSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEAL 538

Query: 74  ---QKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
               + IK+ F        P   T+N+L++ +   ++  E    +L+L  +  +      
Sbjct: 539 NLHDEMIKKGFL-------PDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGIT- 590

Query: 130 YTTLITTCAK---------------SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
           Y TLI +C+                 G ++   +VF  M+    +PN   Y  +I G  +
Sbjct: 591 YDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCR 650

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            G V KA   Y  M      P  V   AL+ A    G
Sbjct: 651 DGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEG 687


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 220/468 (47%), Gaps = 16/468 (3%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++ L  ++R  R G   E + LLE M RKG  + D +   +      + + + +A R  +
Sbjct: 86  TQMLKIFHRSCRSGNYIESLHLLETMVRKG-YNPDVILCTKLIKGFFTLRNVPKAVRVME 144

Query: 86  LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P +  +N L++        + A +VL  ++      D   Y  +I +    GK
Sbjct: 145 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 204

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D   +V  ++++   +P V TY  LI+     G V +A      M S+ +KPD   +N 
Sbjct: 205 LDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNT 264

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I    + G VDRAF+++   N E+   +PD I+   L++A  N G+ +   ++  M   
Sbjct: 265 IIRGMCKEGMVDRAFEMIR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTKM 320

Query: 263 YNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
           ++ K  P V  Y+I I    + G  E A ++   M +KG+ PD      LI      G++
Sbjct: 321 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 380

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           + A E L+   + G    I++Y++++   C N K  Q ALE++  +  +   P  S+ N 
Sbjct: 381 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYNT 439

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           + +AL       + + ++ +M S G+ P+ ITY+ ++    R+  V+    LL   +   
Sbjct: 440 MFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCE 499

Query: 440 VIPNLVMFKCI-IGMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
             P++V +  + +G C + R E A  + + ++  N  RP  E  +T L
Sbjct: 500 FHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVG-NGCRPN-ETTYTVL 545



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 5/334 (1%)

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           Q  G + D ++      +C +SG       +   MV  G  P+V     LI G      V
Sbjct: 79  QSLGFR-DTQMLKIFHRSC-RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNV 136

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            KA     I+  K  +PD   +NALI    +   +D A  VL  M ++     PD +T  
Sbjct: 137 PKAVRVMEILE-KFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSK--DFSPDTVTYN 193

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            ++ +  + G++D A +V   +   N + T   YTI I      G  + A  + D+M  +
Sbjct: 194 IMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSR 253

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD    + +I      G V+ AFE+++  + +G    +ISY+ L+ A  N   W++ 
Sbjct: 254 GLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEG 313

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            +L   M S K  P V T + LIT LC   ++ + M +L  MK  GL P+  +Y  L+ A
Sbjct: 314 EKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAA 373

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             R+  ++V +  L     DG +P++V +  ++ 
Sbjct: 374 FCREGRLDVAIEFLETMISDGCLPDIVNYNTVLA 407


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 202/426 (47%), Gaps = 7/426 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           NR  R G+ +E +  LE +  KG    D V   +      + + +K+A R  +++    +
Sbjct: 70  NRSCRAGKHNESLYFLESVVSKGF-KPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGD 128

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + ++N ++S  + +   + A QV   ++  G   D   Y  +I +    GK++  FEV
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             E++  G +P+V TY  LI+     G++ +A   +  + S+ ++PD   +NA+I    +
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK 248

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  DRA D +  ++A     +PD ++   L+++  N  + +    + K +     +   
Sbjct: 249 EGMEDRALDFVRHLSA--RGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNV 306

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             ++I I+   + G    A +V + M +KG+ PD      LI      G+++ A E L++
Sbjct: 307 VTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEK 366

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             + G    I++Y++++           AL+++E +  +   PTV   N + +AL     
Sbjct: 367 MVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGN 426

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             K +E++S+M   G+ P+ ITY+ L+    R   V+  + LL   +     P ++ F  
Sbjct: 427 KIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNI 486

Query: 450 I-IGMC 454
           + +GMC
Sbjct: 487 VLLGMC 492



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 152/327 (46%), Gaps = 4/327 (1%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D  L   L  +C ++GK +        +V+ G +P+V     LI G   +  + KA    
Sbjct: 62  DAHLMKLLNRSC-RAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVM 120

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
            I+ +    PD   +NA+I+   ++  +D A  V   M +      PD +T   ++ +  
Sbjct: 121 EILETYG-DPDVYSYNAMISGFSKANQIDSANQVFDRMRS--RGFSPDVVTYNIMIGSLC 177

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           + G+++ A EV   + K   K +   YTI I      G    A  ++D++  +G+ PD  
Sbjct: 178 SRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLY 237

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             +A+I      G  + A + ++    +G +  ++SY+ L+ +  N   W+    L + M
Sbjct: 238 TYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDM 297

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
                +P V T + LI++ C   ++ + + VL  MK  GL P++ +Y  L+ A  ++  +
Sbjct: 298 VLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRL 357

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           ++ +  L +   DG +P++V +  I+ 
Sbjct: 358 DLAIEYLEKMVSDGCLPDIVNYNTILA 384



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/381 (20%), Positives = 152/381 (39%), Gaps = 69/381 (18%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           I +GRI+E ++L +++  +GL                                 P L T+
Sbjct: 212 ILEGRINEALELFDELVSRGL--------------------------------RPDLYTY 239

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N ++         + A   +R +   G   D   Y  L+ +     + +    +  +MV 
Sbjct: 240 NAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVL 299

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           +G EPNV T+  LI    + G+V +A     +M+ K + PD   ++ LI+A  + G +D 
Sbjct: 300 SGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDL 359

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A + L +M ++     PD +    ++      G  D A +V++ + +     T   Y   
Sbjct: 360 AIEYLEKMVSD--GCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTM 417

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
            +     G+   A  +  +M +KG+ PDE+  ++LI      G V+ A  +L +      
Sbjct: 418 FSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVD------ 471

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
                                        M++ + +PTV + N ++  +C   ++ + +E
Sbjct: 472 -----------------------------MEATRFQPTVISFNIVLLGMCKAHRVFEGIE 502

Query: 396 VLSDMKSLGLCPNTITYSILL 416
           +L  M   G  PN  +Y +L+
Sbjct: 503 LLITMVEKGCLPNETSYVLLI 523



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 5/227 (2%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFAC 289
           PD +    L+K   N+  + +A  V +++  Y   G P+VY+    I+  S+    + A 
Sbjct: 95  PDVVLCTKLIKGFFNSRNLKKAMRVMEILETY---GDPDVYSYNAMISGFSKANQIDSAN 151

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            V+D M  +G  PD V  + +I      GK+E AFE++ E    G    +I+Y+ L+ A 
Sbjct: 152 QVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEAT 211

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
                  +ALEL++ + S  L+P + T NA+I  +C      + ++ +  + + G  P+ 
Sbjct: 212 ILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDV 271

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           ++Y+ILL +   K   E G  L+      G  PN+V    +I    R
Sbjct: 272 VSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCR 318


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 210/440 (47%), Gaps = 17/440 (3%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            D    + +YN LI    R+G+++  +++ +DMER GL       +     +CK+QK ++
Sbjct: 153 RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQK-LE 211

Query: 79  EAFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA   F+     V  P   TF+ L+         + A+ +   + + G      +YT+LI
Sbjct: 212 EACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLI 271

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +  K G+ +   +++ EMV+ G  P++      +D   KAG+  K    +  + +    
Sbjct: 272 RSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFI 331

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD   ++ LI    ++G  +  +++   M  +   +D       A++     +G+V++A 
Sbjct: 332 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTH--AYNAVIDGFCKSGKVNKA- 388

Query: 255 EVYKMIHKYNIKGTPEV---YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
             Y+++ +  +KG P     Y   I+  ++    + A  ++++    G+  + V  S+LI
Sbjct: 389 --YQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLI 446

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D  G  G+++ A+ I++E   +G++  + +++ L+ A   A+   +AL  ++ MK +K  
Sbjct: 447 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCP 506

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P   T + LI  LC   +  K      +M+ LGL PNTITY+ ++    +  ++     L
Sbjct: 507 PNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGL 566

Query: 432 LSQAKEDGVIPNLVMFKCII 451
            S+ K +G IP+   +  +I
Sbjct: 567 FSRFKANGGIPDSASYNAMI 586



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 109/487 (22%), Positives = 195/487 (40%), Gaps = 42/487 (8%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA----------KSGKVDAMF 147
           L++ C  S+    AF +++ +++   +     YT LI              K+ ++D   
Sbjct: 16  LVANCVKSRKLREAFDIIQTMRKFKFRPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAV 75

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E+F ++      P  + Y  +I G   AG+  +A+G     ++K   P  + +N ++T  
Sbjct: 76  ELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCL 135

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
           G+   V+ A  +  EM  +  P  P   T   L+      G+++ A E+   + +  +  
Sbjct: 136 GKKRRVEEALRIFEEMKRDAVPNVP---TYNILIDMLCREGKLNAALEIRDDMERAGLFP 192

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
                 I I+   +    E ACS+++ M  K   P+ V  S+LID  G  G+V+ A+ + 
Sbjct: 193 NVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLY 252

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++  + G   G I Y+SL+ +       +   ++Y+ M      P ++ +N  +  +   
Sbjct: 253 EKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKA 312

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +  K   +  ++ + G  P+  +YSIL+    +         L    KE G + +   +
Sbjct: 313 GETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAY 372

Query: 448 KCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV 505
             +I G C S +  KA  L E                         E  V G  PTV   
Sbjct: 373 NAVIDGFCKSGKVNKAYQLLE-------------------------EMKVKGHPPTVVTY 407

Query: 506 SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAAS 563
             V+  L      D    L E    +   L      SLIDGFG+      A+ ++EE   
Sbjct: 408 GSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQ 467

Query: 564 FGIVPCV 570
            G+ P V
Sbjct: 468 KGLTPNV 474



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 5/192 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +  R+ E   L E+ +  G+  ++ V ++   +       I EA+   + +      P
Sbjct: 414 LAKIDRLDEAYMLFEEAKSNGI-KLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 472

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T+N L+     +++   A    + +++     +   Y+ LI    +  K +  F  +
Sbjct: 473 NVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFW 532

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM   G++PN  TY  +I G AKAG + +A G +   ++    PD   +NA+I     +
Sbjct: 533 QEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSA 592

Query: 211 GAVDRAFDVLAE 222
                A+ +  E
Sbjct: 593 NKAMDAYALFEE 604



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 18/174 (10%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           Y+ LI    + GRI E   ++E++ +KGL      ++     + K+++ I EA   F+ +
Sbjct: 442 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE-INEALICFQSM 500

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P   T+++L++     +    AF   + +Q+ GLK +   YTT+I+  AK+G +
Sbjct: 501 KDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNI 560

Query: 144 ---DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
                +F  F    N GI P+  +Y A+I+G + A    KA  AY +     +K
Sbjct: 561 LEASGLFSRFK--ANGGI-PDSASYNAMIEGLSSAN---KAMDAYALFEETRLK 608


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 210/440 (47%), Gaps = 17/440 (3%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            D    + +YN LI    R+G+++  +++ +DMER GL       +     +CK+QK ++
Sbjct: 398 RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQK-LE 456

Query: 79  EAFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA   F+     V  P   TF+ L+         + A+ +   + + G      +YT+LI
Sbjct: 457 EACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLI 516

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +  K G+ +   +++ EMV+ G  P++      +D   KAG+  K    +  + +    
Sbjct: 517 RSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFI 576

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD   ++ LI    ++G  +  +++   M  +   +D       A++     +G+V++A 
Sbjct: 577 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTH--AYNAVIDGFCKSGKVNKA- 633

Query: 255 EVYKMIHKYNIKGTPEV---YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
             Y+++ +  +KG P     Y   I+  ++    + A  ++++    G+  + V  S+LI
Sbjct: 634 --YQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLI 691

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D  G  G+++ A+ I++E   +G++  + +++ L+ A   A+   +AL  ++ MK +K  
Sbjct: 692 DGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCP 751

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P   T + LI  LC   +  K      +M+ LGL PNTITY+ ++    +  ++     L
Sbjct: 752 PNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGL 811

Query: 432 LSQAKEDGVIPNLVMFKCII 451
            S+ K +G IP+   +  +I
Sbjct: 812 FSRFKANGGIPDSASYNAMI 831



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 142/618 (22%), Positives = 252/618 (40%), Gaps = 74/618 (11%)

Query: 18  HANYAHDVSEQLH---SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNV 70
           +  +A   +E++H   +YN L+    R         +LE+M   G      +      N 
Sbjct: 111 YFQWAEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANC 170

Query: 71  CKSQKAIKEAF------RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            KS+K ++EAF      R FK    P  S + +L+   +  ++ +    +   +QE G +
Sbjct: 171 VKSRK-LREAFDIIQTMRKFKF--RPAFSAYTILIGALSEVREPDPMLILFHQMQELGYE 227

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
            +  L+TTLI   A+ G+VDA   +  EM +  ++ ++  Y   ID   KAG+V  ++  
Sbjct: 228 VNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKF 287

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
           +  M+S  + PD V + ++I    ++  +D A ++  ++  E +   P       ++   
Sbjct: 288 FHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQL--EQNRKVPCAYAYNTMIMGY 345

Query: 245 ANAGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            +AG+ D   E Y ++ +   KG+ P V  Y   + C  +    E A  ++++M K+  +
Sbjct: 346 GSAGKFD---EAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM-KRDAV 401

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P+    + LID     GK+ AA EI  + +  G+   +++ + ++     A+  ++A  +
Sbjct: 402 PNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSI 461

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA--- 418
           +E M      P   T ++LI  L    ++     +   M   G  P  I Y+ L+ +   
Sbjct: 462 FEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFK 521

Query: 419 CERKDD--------------------------------VEVGLMLLSQAKEDGVIPNLVM 446
           C RK+D                                 E G  L  +    G IP+   
Sbjct: 522 CGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARS 581

Query: 447 FKCII------GMCSRRYEKARTLNEH--VLSFNSGRPQIENKWTS----LALMVYREAI 494
           +  +I      G+ +  YE    + E   VL  ++    I+    S     A  +  E  
Sbjct: 582 YSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMK 641

Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--P 552
           V G  PTV     V+  L      D    L E    +   L      SLIDGFG+     
Sbjct: 642 VKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRID 701

Query: 553 RAFSLLEEAASFGIVPCV 570
            A+ ++EE    G+ P V
Sbjct: 702 EAYLIMEELMQKGLTPNV 719



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 83/192 (43%), Gaps = 5/192 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +  R+ E   L E+ +  G+  ++ V ++   +       I EA+   + +      P
Sbjct: 659 LAKIDRLDEAYMLFEEAKSNGI-KLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTP 717

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T+N L+     +++   A    + +++     +   Y+ LI    +  K +  F  +
Sbjct: 718 NVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFW 777

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM   G++PN  TY  +I G AKAG + +A G +   ++    PD   +NA+I     +
Sbjct: 778 QEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSA 837

Query: 211 GAVDRAFDVLAE 222
                A+ +  E
Sbjct: 838 NKAMDAYALFEE 849



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 18/174 (10%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           Y+ LI    + GRI E   ++E++ +KGL      ++     + K+++ I EA   F+ +
Sbjct: 687 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEE-INEALICFQSM 745

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P   T+++L++     +    AF   + +Q+ GLK +   YTT+I+  AK+G +
Sbjct: 746 KDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNI 805

Query: 144 ---DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
                +F  F    N GI P+  +Y A+I+G + A    KA  AY +     +K
Sbjct: 806 LEASGLFSRFK--ANGGI-PDSASYNAMIEGLSSAN---KAMDAYALFEETRLK 853


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 209/449 (46%), Gaps = 17/449 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN +I      G +   ++LLE+M+  G    D   H        +   +  A    + 
Sbjct: 114 SYNIVISGFCNAGDLHAALELLEEMKSAGFAP-DAFTHTPIITAMANAGDLDGAMDHLRS 172

Query: 87  VP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           +  +P + T+  L++  A +K  E A ++L  ++E G   +   Y  L+    K   V A
Sbjct: 173 MGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGA 232

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             +V  +M+  G  PNV T+ +L+DG  K G V  A    GIM +K ++P+ V ++ALI 
Sbjct: 233 AQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALID 292

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              +S     A +VL EM  +   V PD  T  AL+     A   D+  E  +M+ +   
Sbjct: 293 GLCKSQKFLEAKEVLEEM--KTRGVTPDAFTYSALIHGLCKA---DKIEEAEQMLRRMAG 347

Query: 266 KG-TPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
            G TP+  VY+  I+   ++G    A     +M K+   PD V  + +ID     GK+  
Sbjct: 348 SGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAE 407

Query: 323 AFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           A  IL++ +  G +   +++YS+++     +    +A +L + M      P V T   +I
Sbjct: 408 AQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTII 467

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   +L +   +L  MK  G  PN +TY+ L+    +   V+    ++ + +  G  
Sbjct: 468 DGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCP 527

Query: 442 PNLVMFKCII-GMC-SRRYEKARTLNEHV 468
           PNLV +  ++ G+C S R ++A+ L + +
Sbjct: 528 PNLVTYNTMVNGLCVSGRIKEAQQLVQRM 556



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 188/420 (44%), Gaps = 20/420 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEA 80
           +Y  LI    R  ++ E + LLE+M  +G       Y+     +CK      +Q  +K  
Sbjct: 181 TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVK-- 238

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +  +    P + TFN L+       + + A ++L ++   G++ +   Y+ LI    KS
Sbjct: 239 -KMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS 297

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            K     EV  EM   G+ P+  TY ALI G  KA ++ +A      M      PD VV+
Sbjct: 298 QKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 357

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +++I A  +SG +  A   L EM  +     PD +T   ++      G++  A+ + + +
Sbjct: 358 SSIIHAFCKSGKLLEAQKTLQEMRKQRK--SPDVVTYNTVIDGLCKLGKIAEAQVILEQM 415

Query: 261 HKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +      P+V  Y+  IN   ++     A  + D M K G  PD V  + +ID     G
Sbjct: 416 QESG-DVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCG 474

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           ++E A  +LQ  K  G +  +++Y++L+     A+   +A  + E M++    P + T N
Sbjct: 475 RLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYN 534

Query: 379 ALITALCDGDQLPKTMEVLSDMKS--LGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            ++  LC   ++ +  +++  MK       P+  TY  ++ A    D V+    LL Q K
Sbjct: 535 TMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMK 594



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 169/378 (44%), Gaps = 21/378 (5%)

Query: 90  PTLSTFN-------MLMSVCASSKDSEGAFQVLRLVQEA--GLKADCKLYTTLITTCAKS 140
           P LS F+       ++  V  S KD++ A    R    +  G       + +L+    + 
Sbjct: 31  PDLSPFSGASTTPRIVGRVVNSLKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVLVRC 90

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            K     ++F   + A  EP+V +Y  +I G   AG +  A      M+S    PD    
Sbjct: 91  KKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTH 150

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
             +ITA   +G +D A D L  M       DP+ +T  AL+ A A A +++   E  K++
Sbjct: 151 TPIITAMANAGDLDGAMDHLRSMGC-----DPNVVTYTALIAAFARAKKLE---EAMKLL 202

Query: 261 HKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            +   +G P     Y + ++   +      A  V   M + G  P+ +  ++L+D     
Sbjct: 203 EEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKR 262

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G V+ A ++L     +G+   +++YS+L+     ++ + +A E+ E MK+  + P   T 
Sbjct: 263 GNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTY 322

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           +ALI  LC  D++ +  ++L  M   G  P+ + YS ++ A  +   +      L + ++
Sbjct: 323 SALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRK 382

Query: 438 DGVIPNLVMFKCII-GMC 454
               P++V +  +I G+C
Sbjct: 383 QRKSPDVVTYNTVIDGLC 400


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 194/392 (49%), Gaps = 9/392 (2%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           F    +++KA       F++    ++ TFN++++V       + A + + L++  G+K +
Sbjct: 166 FLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPN 225

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y T+I      G+V+    +F  M   G++P+ +TYG+ I G  K G++ +A G   
Sbjct: 226 VVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLE 285

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPVDPDHITIGALMKAC 244
            M+   ++P  V +N LI      G ++ AFD   +M  E  +  V   ++ I AL   C
Sbjct: 286 KMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDC 345

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
               ++D A  + K + +  +      Y I IN   + G+ + A +++D+M  KG+ P  
Sbjct: 346 ----KMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTR 401

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 363
           V  ++LI      G+++ A ++ ++   +GI   +I +++L+ G C+N  N  +A  + +
Sbjct: 402 VTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANG-NMDRAFAMLK 460

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M  +K+ P   T N L+   C   ++    E++ +MKS G+ P+ I+Y+ L+    ++ 
Sbjct: 461 EMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRG 520

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           D++    +  +    G  P L+ +  +I G+C
Sbjct: 521 DMKDAFRVRDEMLSIGFNPTLLTYNALIQGLC 552



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 186/388 (47%), Gaps = 7/388 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L ++G++ +  + +  ME  G+      Y+      C S+  ++ A   F L+     
Sbjct: 199 NVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYC-SRGRVEGARMIFDLMKCRGV 257

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+   +S        E A  +L  ++E GL+     Y TLI      G ++  F+
Sbjct: 258 KPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFD 317

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              +MV  G+ P V TY  LI       ++ +A G    M  K + PD V +N LI    
Sbjct: 318 YRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYC 377

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V +AF +  EM ++   + P  +T  +L+   +  G++ +A ++++ I +  I   
Sbjct: 378 RCGNVKKAFTLHDEMISK--GIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPD 435

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             ++   I+     G+ + A ++  +M +  V+PDEV  + L+      GKVEAA E+++
Sbjct: 436 LIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIE 495

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E K++GI    ISY++L+   S   + + A  + + M SI   PT+ T NALI  LC  +
Sbjct: 496 EMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNE 555

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +     ++L +M S G+ PN  TY  L+
Sbjct: 556 EGDHAEQLLKEMISKGITPNDNTYLSLI 583



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 183/400 (45%), Gaps = 6/400 (1%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           V +      C   K   +AF  F ++      P +   N ++S+   S  +E A+ +   
Sbjct: 122 VLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAE 181

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +    +K+    +  +I    K GK+    E    M   GI+PNV TY  +I G    G+
Sbjct: 182 MFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGR 241

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           V  A   + +M+ + VKPD   + + I+   + G ++ A  +L +M  E+  + P  +T 
Sbjct: 242 VEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMK-EI-GLRPTAVTY 299

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+    N G ++ A +    + +  +  T   Y + I+        + A  +  +M++
Sbjct: 300 NTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSE 359

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           KG++PD V  + LI+     G V+ AF +  E  ++GI    ++Y+SL+   S     ++
Sbjct: 360 KGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQ 419

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A +L+E +    + P +   NALI   C    + +   +L +M  + + P+ +T++ L+ 
Sbjct: 420 ADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQ 479

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
              R+  VE    L+ + K  G+ P+ + +  +I   S+R
Sbjct: 480 GRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKR 519



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 167/397 (42%), Gaps = 35/397 (8%)

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           + + F   G+ R        V+++ LI AC +    D AF+    M  +   V P     
Sbjct: 102 IREVFNELGVARGVLGIKTYVLYDLLIRACCELKRGDDAFECFDMMKGK--GVIPHVHAC 159

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             ++     + + ++A  +Y  + +  IK +   + I IN   + G  + A      M  
Sbjct: 160 NDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEA 219

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQ 356
            G+ P+ V  + +I      G+VE A  I    K +G+     +Y S + G C   K  +
Sbjct: 220 LGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGK-LE 278

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A  + E MK I L+PT  T N LI   C+   L    +    M   GL P   TY++L+
Sbjct: 279 EASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLI 338

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSG 474
            A      ++    ++ +  E G++P+ V +  +I G C     +KA TL++ ++S   G
Sbjct: 339 HALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMIS--KG 396

Query: 475 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 534
                  +TSL  ++ +                     ++    D+ E++V   G+  D 
Sbjct: 397 IQPTRVTYTSLIYVLSKRG-------------------RMKQADDLFEKIVRK-GIFPDL 436

Query: 535 LKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP 568
           +      +LIDG    G  D RAF++L+E     +VP
Sbjct: 437 IM---FNALIDGHCANGNMD-RAFAMLKEMDQMKVVP 469



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 40/176 (22%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++GR+ +  DL E + RKG+     +++A     C +   +  AF   K +      P
Sbjct: 411 LSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHC-ANGNMDRAFAMLKEMDQMKVVP 469

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV- 149
              TFN LM         E A +++  ++  G+K D   Y TLI+  +K G +   F V 
Sbjct: 470 DEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVR 529

Query: 150 ----------------------------------FHEMVNAGIEPNVHTYGALIDG 171
                                               EM++ GI PN +TY +LI+G
Sbjct: 530 DEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEG 585


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 167/361 (46%), Gaps = 2/361 (0%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L  +  +++  A  +D E        ++  GL      Y  ++    K+G +    ++ 
Sbjct: 270 NLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDIL 329

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM   G+ PN   Y  ++DG A+ G    AF  +  M S  +KPD V +N L+ A  ++
Sbjct: 330 EEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKA 389

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D+A  VL   N + + + P   T  +++      G + +A EV+  I    ++    
Sbjct: 390 GRMDKALGVLE--NIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVV 447

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   ++  ++    E A  + D+M   GV+P+E   +AL +    AG VE AF + Q  
Sbjct: 448 SYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRM 507

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K + +++ I++Y +L+ AC  +   Q+A+E+++ +    LK    T   ++       +L
Sbjct: 508 KKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGEL 567

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            K  ++L DM+  G   +TI Y+  + AC R  D E     L+  +E  +  N   +  +
Sbjct: 568 SKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTL 627

Query: 451 I 451
           I
Sbjct: 628 I 628



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 192/406 (47%), Gaps = 33/406 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+++  P L  + +L+   A   D   A      ++ + +K +  +YT+LI   A++  +
Sbjct: 123 FQVIDKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDM 182

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +       EM++ GI+ N   + ++I G A AG    A   +   +++N+ P  +V+N++
Sbjct: 183 EGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSI 242

Query: 204 ITACGQSGAVDRAFDVLAEMN------------------AEVHP---------------V 230
           + A  Q+G ++    +LA+M                   AE+                 +
Sbjct: 243 VQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGL 302

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P   T G ++K    AG + +A ++ + + K+ +     +Y + ++  ++ GD+  A  
Sbjct: 303 SPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFK 362

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++DM   G+ PD V  + L+     AG+++ A  +L+  +   +   I +Y+S++    
Sbjct: 363 VWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYV 422

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
              + QKALE+++ +K+  L+P V + N+L++ L    Q+     +L +M + G+ PN  
Sbjct: 423 KGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNER 482

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           +Y+ L     R  DVE    +  + K++ +  ++V +  ++  C +
Sbjct: 483 SYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCK 528



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 166/354 (46%), Gaps = 7/354 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
             + G +++ +D+LE+M++ G+   +K+ +A   +          AF+ ++ + +    P
Sbjct: 316 FTKAGNMAKALDILEEMDKHGV-SPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKP 374

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T+N+L+     +   + A  VL  +Q   L    + YT+++    K G +    EVF
Sbjct: 375 DIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVF 434

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             +  AG+ P V +Y +L+ G AKA Q+  A      M +  V P+   + AL     ++
Sbjct: 435 DRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARA 494

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G V++AF +   M  E   +D   +  GAL+KAC  +G + RA EV++ I    +K    
Sbjct: 495 GDVEKAFGMFQRMKKENLAIDI--VAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRI 552

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   ++  ++ G+   A  +  DM K G   D +  ++ I     +G  E   E L   
Sbjct: 553 TYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVM 612

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           + + + V   +Y++L+     A +  +A+  YE  K+  L+   +  N L++ L
Sbjct: 613 REKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNCLLSGL 666



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/427 (20%), Positives = 184/427 (43%), Gaps = 9/427 (2%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFF 84
           YN +++     G +     LL  ME +G      +Y      F  +   +K +    R  
Sbjct: 239 YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLK 298

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               +PT +T+  ++ +   + +   A  +L  + + G+  +  +Y  ++   A+ G   
Sbjct: 299 ACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFT 358

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           A F+V+ +MV+AG++P++ TY  L+    KAG++ KA G    +++  + P    + +++
Sbjct: 359 AAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSIL 418

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G + +A +V   +  +   + P  ++  +L+   A A Q++ AR +   +    
Sbjct: 419 DGYVKGGHIQKALEVFDRI--KTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANG 476

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +      YT      ++ GD E A  ++  M K+ +  D V   AL+     +G ++ A 
Sbjct: 477 VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAV 536

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+ Q+  + G+    I+Y +++   +      KA +L + M+            + I A 
Sbjct: 537 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKAC 596

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
                  +  E L+ M+   L  N  TY+ L+       D +  +    QAK  G+  + 
Sbjct: 597 FRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDS 656

Query: 445 VMFKCII 451
            +  C++
Sbjct: 657 ALSNCLL 663


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 167/340 (49%), Gaps = 3/340 (0%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           L +    K   +LY  +I +  +S  ++     F+EMV+ G  P  + +  L+     + 
Sbjct: 84  LTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLTFVVGSS 143

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
              + +  +   +SK V  D   F  LI  C ++G ++++FD+L E+        P+ + 
Sbjct: 144 SFNQWWSFFNENKSK-VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTE--FGFSPNVVI 200

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              L+  C   G++++A++++  + K  +      YT+ IN   + G  +    +Y+ M 
Sbjct: 201 YTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQ 260

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           + GV P+    + +++     G+ + AF++  E + +G+S  I++Y++L+G         
Sbjct: 261 EDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLN 320

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A ++ + MKS  + P + T N LI   C   +L K + +  D+KS GL P+ +TY+IL+
Sbjct: 321 EANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILV 380

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
               RK D      ++ + +E G+ P+ V +  +I   +R
Sbjct: 381 SGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 165/368 (44%), Gaps = 3/368 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +F +L+  C  + + E +F +L  + E G   +  +YTTLI  C K G+++   ++F EM
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G+  N  TY  LI+G  K G   + F  Y  M+   V P+   +N ++    + G  
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT 284

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             AF V  EM      V  + +T   L+       +++ A +V   +    I      Y 
Sbjct: 285 KDAFQVFDEMRE--RGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYN 342

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+     G    A S+  D+  +G+ P  V  + L+      G    A ++++E + +
Sbjct: 343 TLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEER 402

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI    ++Y+ L+   + + N +KA++L   M+ + L P V T + LI   C   Q+ + 
Sbjct: 403 GIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEA 462

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG- 452
             +   M      PN + Y+ +++   ++      L LL + +E  + PN+  ++ +I  
Sbjct: 463 SRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEV 522

Query: 453 MCSRRYEK 460
           +C  R  K
Sbjct: 523 LCKERKSK 530



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 185/398 (46%), Gaps = 21/398 (5%)

Query: 64  HARFF------NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           H++FF      +     +  K  FR ++++ N  + + ++ +S+   ++           
Sbjct: 71  HSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNE----------- 119

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           + + G       +  L+T    S   +  +  F+E   + +  +V+++G LI GC +AG+
Sbjct: 120 MVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFNEN-KSKVVLDVYSFGILIKGCCEAGE 178

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           + K+F     +      P+ V++  LI  C + G +++A D+  EM      +  +  T 
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGK--LGLVANERTY 236

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+      G   +  E+Y+ + +  +      Y   +N   + G  + A  V+D+M +
Sbjct: 237 TVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRE 296

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           +GV  + V  + LI       K+  A +++ + K+ GI+  +I+Y++L+          K
Sbjct: 297 RGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGK 356

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           AL L   +KS  L P++ T N L++  C         +++ +M+  G+ P+ +TY+IL+ 
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILID 416

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
              R D++E  + L    +E G++P++  +  +I G C
Sbjct: 417 TFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFC 454



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 163/376 (43%), Gaps = 7/376 (1%)

Query: 83  FFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F ++V N   P  + FN L++    S      +       ++ +  D   +  LI  C +
Sbjct: 117 FNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFN-ENKSKVVLDVYSFGILIKGCCE 175

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +G+++  F++  E+   G  PNV  Y  LIDGC K G++ KA   +  M    +  +   
Sbjct: 176 AGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERT 235

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +  LI    ++G   + F++  +M  +   V P+  T   +M      G+   A +V+  
Sbjct: 236 YTVLINGLFKNGVKKQGFEMYEKMQED--GVFPNLYTYNCVMNQLCKDGRTKDAFQVFDE 293

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +  +      Y   I    +      A  V D M   G+ P+ +  + LID     GK
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +  A  + ++ K++G+S  +++Y+ L+       +   A ++ + M+   +KP+  T   
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI      D + K +++   M+ LGL P+  TYS+L+     K  +     L     E  
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN 473

Query: 440 VIPNLVMFKC-IIGMC 454
             PN V++   I+G C
Sbjct: 474 CEPNEVIYNTMILGYC 489



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 165/363 (45%), Gaps = 4/363 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P +  +  L+  C    + E A  +   + + GL A+ + YT LI    K+G     FE
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFE 254

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ +M   G+ PN++TY  +++   K G+   AF  +  MR + V  + V +N LI    
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   ++ A  V+ +M ++   ++P+ IT   L+      G++ +A  + + +    +  +
Sbjct: 315 REMKLNEANKVVDQMKSD--GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I ++   + GD   A  +  +M ++G+ P +V  + LID    +  +E A ++  
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRL 432

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             +  G+   + +YS L+          +A  L++ M     +P     N +I   C   
Sbjct: 433 SMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEG 492

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
              + +++L +M+   L PN  +Y  ++ V C+ +   E    L+ +  + G+ P+  + 
Sbjct: 493 SSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAE-RLVEKMIDSGIDPSTSIL 551

Query: 448 KCI 450
             I
Sbjct: 552 SLI 554



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 160/354 (45%), Gaps = 7/354 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           ++G I +  DL  +M + GL+  ++ Y     N        K+ F  ++ +      P L
Sbjct: 210 KKGEIEKAKDLFFEMGKLGLVANERTYTV-LINGLFKNGVKKQGFEMYEKMQEDGVFPNL 268

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+N +M+       ++ AFQV   ++E G+  +   Y TLI    +  K++   +V  +
Sbjct: 269 YTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQ 328

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M + GI PN+ TY  LIDG    G++ KA      ++S+ + P  V +N L++   + G 
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGD 388

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              A  ++ EM  E   + P  +T   L+   A +  +++A ++   + +  +      Y
Sbjct: 389 TSGAAKMVKEM--EERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTY 446

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           ++ I+     G    A  ++  M +K   P+EV  + +I      G    A ++L+E + 
Sbjct: 447 SVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEE 506

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           + ++  + SY  ++      +  ++A  L E M    + P+ S ++ +  A  D
Sbjct: 507 KELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLISRAKND 560



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 120/244 (49%), Gaps = 10/244 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAI 77
           VS  + +YN LI    R+ +++E   +++ M+  G+      Y+     F  V K  KA+
Sbjct: 299 VSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                      +P+L T+N+L+S      D+ GA ++++ ++E G+K     YT LI T 
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTF 418

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
           A+S  ++   ++   M   G+ P+VHTY  LI G    GQ+ +A   +  M  KN +P+ 
Sbjct: 419 ARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNE 478

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREV 256
           V++N +I    + G+  RA  +L EM  E   + P+  +   +++  C      +  R V
Sbjct: 479 VIYNTMILGYCKEGSSYRALKLLKEM--EEKELAPNVASYRYMIEVLCKERKSKEAERLV 536

Query: 257 YKMI 260
            KMI
Sbjct: 537 EKMI 540


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 194/422 (45%), Gaps = 14/422 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    ++GR+ E   L E+M   GL      Y++     CK  K +KEA   FK +
Sbjct: 46  YNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETK-MKEAMELFKTM 104

Query: 88  PN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                 P + T++ ++S +C + K +E    +   + E G  A+   Y  LI    K   
Sbjct: 105 AEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDEN 164

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           ++  +++  EM + G  P+  TY  ++ G  + G+V++A   +  M S+   PD V +N 
Sbjct: 165 IERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNG 224

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L+ A  + G  D A  +  ++ A+ +   PD +T  +++   A    +D A E++K +  
Sbjct: 225 LLDALYKEGKTDEAMKLFKDVIAKGYM--PDTVTYNSILLGLARKSNMDEAEEMFKKMVA 282

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                    Y+I ++   +    + A  V ++M+K G +PD V  + L+D       V+ 
Sbjct: 283 SGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDK 342

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A E+     + G +  I+SYS ++           A  L++ M   KL P V T N L+ 
Sbjct: 343 AHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMD 402

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA-KEDGVI 441
            LC   +L +  ++L  M   G  P+ + Y+ L+    RK    +    L+QA KE G +
Sbjct: 403 GLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGL-RKQGRHIQADRLTQAMKEKGFL 461

Query: 442 PN 443
            +
Sbjct: 462 SD 463



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 190/387 (49%), Gaps = 11/387 (2%)

Query: 89  NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +P   TF +++ S C   K  +G +++   + + G+  D   Y  LI   AK G+VD   
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDG-YKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            ++ EMV+ G+EP+++TY +L++   K  ++ +A   +  M  K  +PD V ++ +I+  
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G V  A ++L     E      + +   AL+        ++RA   YK++ +   KG
Sbjct: 124 CKTGKVTEALEMLFHKMIE-RGCSANTVAYNALINGLCKDENIERA---YKLLEEMASKG 179

Query: 268 -TPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P+   Y   ++   + G    A   +D M  +G  PD V  + L+D     GK + A 
Sbjct: 180 YVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAM 239

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++ ++   +G     ++Y+S++   +   N  +A E+++ M +    P  +T + +++  
Sbjct: 240 KLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGH 299

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++    +VL +M  +G  P+ +TY+ILL    + + V+    L S   ++G  P++
Sbjct: 300 CRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDI 359

Query: 445 VMFKCII-GMC-SRRYEKARTLNEHVL 469
           V +  ++ G+C + +   AR L + ++
Sbjct: 360 VSYSVVLNGLCKTNKVHDARVLFDRMI 386



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 185/402 (46%), Gaps = 14/402 (3%)

Query: 71  CKSQKAIKEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           CK Q  +++ ++ F+ + +  +S     +N+L+   A     + A ++   +   GL+  
Sbjct: 19  CK-QGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPS 77

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-Y 185
              Y +L+    K  K+    E+F  M   G EP+V TY  +I G  K G+V +A    +
Sbjct: 78  IYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLF 137

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M  +    + V +NALI    +   ++RA+ +L EM ++ +   PD+IT   ++    
Sbjct: 138 HKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYV--PDNITYNTILSGLC 195

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
             G+V  A++ +  +           Y   ++   + G  + A  ++ D+  KG +PD V
Sbjct: 196 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTV 255

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             ++++        ++ A E+ ++    G +    +YS ++     AK    A ++ E M
Sbjct: 256 TYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEM 315

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
             I   P V T N L+  LC  + + K  E+ S M   G  P+ ++YS++L    + + V
Sbjct: 316 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 375

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNE 466
               +L  +  E  ++P++V F  ++ G+C     KA  L+E
Sbjct: 376 HDARVLFDRMIERKLVPDVVTFNILMDGLC-----KAGKLDE 412



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 186/421 (44%), Gaps = 10/421 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           +QG++ +   L E M   G+   D + +    +    +  + EA R ++ + +    P++
Sbjct: 20  KQGKLRDGYKLFEQMLDNGI-SPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSI 78

Query: 93  STFNMLMSV-CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-VF 150
            T+N L++  C  +K  E A ++ + + E G + D   Y+T+I+   K+GKV    E +F
Sbjct: 79  YTYNSLLNAFCKETKMKE-AMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLF 137

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           H+M+  G   N   Y ALI+G  K   + +A+     M SK   PD + +N +++   + 
Sbjct: 138 HKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRM 197

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G V  A      M +  +   PD +    L+ A    G+ D A +++K +          
Sbjct: 198 GKVSEAKQFFDSMPSRGYS--PDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTV 255

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   +   ++  + + A  ++  M   G  P+    S ++     A KV+ A ++L+E 
Sbjct: 256 TYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEM 315

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
              G    +++Y+ L+          KA EL+  M      P + + + ++  LC  +++
Sbjct: 316 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 375

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                +   M    L P+ +T++IL+    +   ++    LL Q    G  P+ V +  +
Sbjct: 376 HDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTL 435

Query: 451 I 451
           +
Sbjct: 436 M 436


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 210/450 (46%), Gaps = 25/450 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G + E   L   M  +G +     Y      +CK  + I EA    + 
Sbjct: 118 TYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGR-IDEARELIQE 176

Query: 87  VPN------PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTC 137
           +        P + T+N  +  +C  S  +E A +++R +++  L+   D   ++TLI   
Sbjct: 177 MTRKSCDVLPNIITYNSFLDGLCKQSMTAE-ACELMRSLRDGSLRVSPDTVTFSTLIDGL 235

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G+ D       +M+  G  PNV TY AL++G  KA ++ +A      M  K V PD 
Sbjct: 236 CKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDV 293

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           + ++ L+ A  ++  VD A ++L  M +      P+ +T  +++     +   DR+ E +
Sbjct: 294 ITYSVLVDAFCKASRVDEALELLHGMAS--RGCTPNVVTFNSIIDGLCKS---DRSGEAF 348

Query: 258 KM-IHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           ++ +  YN    P+   + I I    + G++E A +++++M  K + PD +   ALID  
Sbjct: 349 QIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGL 408

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             AG+VEAA +IL    N G+   +++Y+ L+     +   ++  E  E M S    P  
Sbjct: 409 CKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPES 468

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T  +L+ ALC   +    ++++S +KS G  P+T+TY+IL+    +    E  + +L +
Sbjct: 469 MTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEE 528

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
               G  P+   F    G   R    A T+
Sbjct: 529 MVGKGHQPDSFTFAACFGGLHRSGNLAGTM 558



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 192/387 (49%), Gaps = 7/387 (1%)

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSG 141
           FF    + +++ +N+++     + ++  A ++ R  +   G+      Y T+I    KS 
Sbjct: 36  FFVRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSN 95

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++ A  E+F E+V  G  P+V TY  LID   KAG + +A   +G M S+   P+ V ++
Sbjct: 96  ELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYS 155

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    + G +D A +++ EM  +   V P+ IT  + +           A E+ + + 
Sbjct: 156 VLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR 215

Query: 262 KYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
             +++ +P+  T +  I+   + G  + AC+  DDM   G +P+ V  +AL++    A K
Sbjct: 216 DGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADK 273

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +E A  +++   ++G++  +I+YS L+ A   A    +ALEL   M S    P V T N+
Sbjct: 274 MERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNS 333

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           +I  LC  D+  +  ++   + +  L P+ +T++IL+    +  + E    L  +     
Sbjct: 334 IIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 393

Query: 440 VIPNLVMFKCII-GMC-SRRYEKARTL 464
           + P+++ F  +I G+C + + E AR +
Sbjct: 394 MQPDVMTFGALIDGLCKAGQVEAARDI 420


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 215/481 (44%), Gaps = 26/481 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    F+ L SV       E A Q    ++   +    +    L+   AK GK D +   
Sbjct: 190 PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 249

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M+ AG  P V TY  +ID   K G V  A G +  M+ + + PD V +N++I   G+
Sbjct: 250 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 309

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D       EM       +PD IT  AL+      G++    E Y+ +    +K   
Sbjct: 310 VGRLDDTVCFFEEMKDMC--CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNV 367

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  ++   + G  + A   Y DM + G++P+E   ++LID     G +  AF +  E
Sbjct: 368 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 427

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+   +++Y++L+    +A+  ++A EL+  M +  + P +++ NALI        
Sbjct: 428 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + + +E+L+++K  G+ P+ + Y   +      + +E   +++++ KE G+  N +++  
Sbjct: 488 MDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTT 547

Query: 450 IIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
           ++    +       L  H+L         E K   + + V    ++   +   ++VSK +
Sbjct: 548 LMDAYFKSGNPTEGL--HLLD--------EMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 597

Query: 510 GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIV 567
                    D   R+  + G+ A+A   +   ++IDG  + +    A +L E+    G+V
Sbjct: 598 ---------DYFNRISNDFGLQANA---AIFTAMIDGLCKDNQVEAATTLFEQMVQKGLV 645

Query: 568 P 568
           P
Sbjct: 646 P 646



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 179/424 (42%), Gaps = 47/424 (11%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    + GR+ + +   E+M+          Y+A     CK  K +     F++ 
Sbjct: 299 TYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGK-LPIGLEFYRE 357

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + +++ L+         + A +    ++  GL  +   YT+LI    K G 
Sbjct: 358 MKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGN 417

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +   F + +EM+  G+E NV TY ALIDG   A ++ +A   +G M +  V P+   +NA
Sbjct: 418 LSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNA 477

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    ++  +DRA ++L E+      + PD +  G  +    +  +++ A+ V   + +
Sbjct: 478 LIHGFVKAKNMDRALELLNELKG--RGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKE 535

Query: 263 YNIKGTPEVYTIAINCCSQTG---------------DWEFA----CSVYDDMTKKGVIPD 303
             IK    +YT  ++   ++G               D E      C + D + K  ++  
Sbjct: 536 CGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSK 595

Query: 304 EV-----------------FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            V                   +A+ID      +VEAA  + ++   +G+     +Y+SLM
Sbjct: 596 AVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLM 655

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                  N  +AL L + M  I +K  +    +L+  L   +QL K    L +M   G+ 
Sbjct: 656 DGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIH 715

Query: 407 PNTI 410
           P+ +
Sbjct: 716 PDEV 719



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 3/176 (1%)

Query: 91  TLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           T+ TF +L+  +C +   S+      R+  + GL+A+  ++T +I    K  +V+A   +
Sbjct: 576 TVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTL 635

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +MV  G+ P+   Y +L+DG  K G V +A      M    +K D + + +L+     
Sbjct: 636 FEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSH 695

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + +A   L EM  E   + PD +   +++K     G +D A E+   + K+ +
Sbjct: 696 CNQLQKARSFLEEMIGE--GIHPDEVLCISVLKKHYELGCIDEAVELQSYLMKHQL 749



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 70/292 (23%), Positives = 121/292 (41%), Gaps = 8/292 (2%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTF 95
           R+ E  +L   M+  G++     Y+A      K+ K +  A      +      P L  +
Sbjct: 452 RMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA-KNMDRALELLNELKGRGIKPDLLLY 510

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
              +    S +  E A  V+  ++E G+KA+  +YTTL+    KSG       +  EM  
Sbjct: 511 GTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKE 570

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYG-IMRSKNVKPDRVVFNALITACGQSGAVD 214
             IE  V T+  LIDG  K   V+KA   +  I     ++ +  +F A+I    +   V+
Sbjct: 571 LDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVE 630

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A  +  +M  +   + PD     +LM      G V  A  +   + +  +K     YT 
Sbjct: 631 AATTLFEQMVQK--GLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTS 688

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            +   S     + A S  ++M  +G+ PDEV   +++      G ++ A E+
Sbjct: 689 LVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740



 Score = 42.4 bits (98), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 38/198 (19%), Positives = 79/198 (39%), Gaps = 13/198 (6%)

Query: 289 CSVYDDM--TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
           C V+D +  T+   +P      AL       G +E A +   + K   +     S + L+
Sbjct: 175 CDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLL 234

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
              +           ++ M     +PTV T N +I  +C    +     +  +MK  GL 
Sbjct: 235 HRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLV 294

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI-----------IGMCS 455
           P+T+TY+ ++    +   ++  +    + K+    P+++ +  +           IG+  
Sbjct: 295 PDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEF 354

Query: 456 RRYEKARTLNEHVLSFNS 473
            R  K   L  +V+S+++
Sbjct: 355 YREMKGNGLKPNVVSYST 372


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 162/345 (46%), Gaps = 46/345 (13%)

Query: 113 QVLRLVQE---AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
           +VL+L+QE    GLK +   Y ++I    KSGKVD    V  EM+N GI P+   Y  LI
Sbjct: 28  KVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLI 87

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAE 226
           DG  K G +  A+  +  M  + + PD + + A+I     CG+    D+ F+ +      
Sbjct: 88  DGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFS---- 143

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V+PD +T                                   YT  I+   ++G+ E
Sbjct: 144 -RGVEPDEVT-----------------------------------YTTLIDGYCKSGEME 167

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A S+++ M + G+ P+ V  +AL D     G+V+ A E+L E   +G+ + I +Y+SL+
Sbjct: 168 KAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLV 227

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                + N ++A++L E M+   + P   T   L+ A C   ++ K  E+L +M   GL 
Sbjct: 228 NGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQ 287

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           P  IT+++L+        +E G  LL+   E G++PN   +  ++
Sbjct: 288 PTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLM 332



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 161/327 (49%), Gaps = 2/327 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T+N ++ +   S   + A +VLR +   G+  D  +YTTLI    K G + A +++
Sbjct: 43  PNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKL 102

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM    I P+   Y A+I G  + G++ +A   +  M S+ V+PD V +  LI    +
Sbjct: 103 FDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCK 162

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           SG +++AF +  +M      + P+ +T  AL       GQVD A E+   +    ++   
Sbjct: 163 SGEMEKAFSLHNQMVQ--SGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNI 220

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +N   ++G+   A  + ++M   G+ PD +  + L+D     G++  A E+L+E
Sbjct: 221 CTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLRE 280

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             ++G+   +I+++ LM     +   +    L   M    + P  +T N+L+   C  + 
Sbjct: 281 MLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNN 340

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
           +  T E+   M + G+ P++ TY+IL+
Sbjct: 341 MRCTTEIYKGMCARGVMPDSNTYNILI 367



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 200/421 (47%), Gaps = 15/421 (3%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L++YN +I    + G++ +   +L +M  +G++    VY       CK    I+ A++ 
Sbjct: 44  NLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGN-IQAAYKL 102

Query: 84  F------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           F      ++VP+    T  ++  +C   K  E A +V   +   G++ D   YTTLI   
Sbjct: 103 FDEMEKQRIVPDFIAYT-AVICGLCRCGKMME-ADKVFNKMFSRGVEPDEVTYTTLIDGY 160

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            KSG+++  F + ++MV +G+ PNV TY AL DG  K GQV  A      M  K ++ + 
Sbjct: 161 CKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNI 220

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             +N+L+    +SG + +A  ++ EM  EV  + PD IT   LM A    G++ +A E+ 
Sbjct: 221 CTYNSLVNGLCKSGNIRQAVKLMEEM--EVAGMYPDTITFTTLMDAYCKTGEMVKAHELL 278

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + +    ++ T   + + +N    +G  E    +   M +KG++P+    ++L+      
Sbjct: 279 REMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIR 338

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
             +    EI +    +G+     +Y+ L+     A+N ++A  L++ M       T S+ 
Sbjct: 339 NNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSY 398

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N++I       ++ +  E+  +M+  G+  +   Y++ +     + ++E  L L  +A E
Sbjct: 399 NSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAIE 458

Query: 438 D 438
           +
Sbjct: 459 N 459



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT---IAINCCSQTGDWEF 287
           PD ++   ++      G++ +   V K+I +  +KG  P +YT   I +  C ++G  + 
Sbjct: 8   PDVVSYSTVINGYCLGGELQK---VLKLIQEMQMKGLKPNLYTYNSIILLLC-KSGKVDD 63

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  V  +M  +G++PD V  + LID     G ++AA+++  E + Q I    I+Y++++ 
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                    +A +++  M S  ++P   T   LI   C   ++ K   + + M   GL P
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTP 183

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           N +TY+ L     +   V+    LL +    G+  N+  +  ++ G+C
Sbjct: 184 NVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLC 231



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 112/255 (43%), Gaps = 20/255 (7%)

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K +G +  ++SYS+++         QK L+L + M+   LKP + T N++I  LC   ++
Sbjct: 2   KFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKV 61

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                VL +M + G+ P+T+ Y+ L+    +  +++    L  + ++  ++P+ + +  +
Sbjct: 62  DDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAV 121

Query: 451 I-GM--CSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIV 495
           I G+  C +  E  +  N+    F+ G    E  +T+L            A  ++ + + 
Sbjct: 122 ICGLCRCGKMMEADKVFNKM---FSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ 178

Query: 496 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PR 553
           +G  P V   + +   L      D    L+  +      L      SL++G  +     +
Sbjct: 179 SGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQ 238

Query: 554 AFSLLEEAASFGIVP 568
           A  L+EE    G+ P
Sbjct: 239 AVKLMEEMEVAGMYP 253



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 36/196 (18%)

Query: 295 MTKKGVIPDEVFLSALID---FAGH--------------------------------AGK 319
           M  +G  PD V  S +I+     G                                 +GK
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           V+ A  +L+E  NQGI    + Y++L+       N Q A +L++ M+  ++ P      A
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           +I  LC   ++ +  +V + M S G+ P+ +TY+ L+    +  ++E    L +Q  + G
Sbjct: 121 VICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSG 180

Query: 440 VIPNLVMFKCII-GMC 454
           + PN+V +  +  G+C
Sbjct: 181 LTPNVVTYTALADGLC 196


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 195/426 (45%), Gaps = 7/426 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           NR  R G+ +E +  LE M  KG    D +   +      + + I +A R  +++     
Sbjct: 77  NRSCRAGKYNESLYFLECMVDKGYTP-DVILCTKLIKGFFNSRNIGKATRVMEILERYGK 135

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +N L+S    +   E A +VL  ++  G   D   Y  +I +    GK+D   E+
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEI 195

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F E++    EP V TY  LI+     G +  A      M SK ++PD + +NA+I    +
Sbjct: 196 FEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCK 255

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              VD+AF++L  +++      PD IT   L++   + G+     ++   +     K   
Sbjct: 256 EMMVDKAFELLRSLSS--RGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNV 313

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             ++I I    + G  E A ++   M +KG+ PD      LI      G+++ A E L+ 
Sbjct: 314 VTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEY 373

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             + G    I++Y+++M          +ALE++E +  +   P VS+ N L +AL     
Sbjct: 374 MISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGD 433

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             + +E++  + + G+ P+ ITY+ L+    R   V+  + LL   +     PN+V +  
Sbjct: 434 RYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNI 493

Query: 450 I-IGMC 454
           I +G+C
Sbjct: 494 ILLGLC 499



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 154/323 (47%), Gaps = 4/323 (1%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+    ++GK +        MV+ G  P+V     LI G   +  + KA     I+  + 
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILE-RY 133

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
            KPD   +NALI+   ++  ++ A  VL  M +      PD +T   ++ +  + G++D 
Sbjct: 134 GKPDVFAYNALISGFIKANQLENANRVLDRMKS--RGFLPDVVTYNIMIGSFCSRGKLDL 191

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A E+++ + K N + T   YTI I      G  + A  + D+M  KG+ PD +  +A+I 
Sbjct: 192 ALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIR 251

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                  V+ AFE+L+   ++G    II+Y+ L+    +   W +  +L   M SI  KP
Sbjct: 252 GMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKP 311

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V T + LI  LC   ++ + + +L  MK  GL P+   Y  L+    R+  +++    L
Sbjct: 312 NVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFL 371

Query: 433 SQAKEDGVIPNLVMFKCII-GMC 454
                DG +P++V +  I+ G+C
Sbjct: 372 EYMISDGCLPDIVNYNTIMAGLC 394



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 149/353 (42%), Gaps = 3/353 (0%)

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
           +S++   A +V+ +++  G K D   Y  LI+   K+ +++    V   M + G  P+V 
Sbjct: 116 NSRNIGKATRVMEILERYG-KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVV 174

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           TY  +I      G++  A   +  +   N +P  + +  LI A    G +D A  +L EM
Sbjct: 175 TYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEM 234

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
            ++   ++PD +T  A+++       VD+A E+ + +     K     Y I +      G
Sbjct: 235 LSK--GLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRG 292

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
            W     +  +M   G  P+ V  S LI      GKVE A  +L+  K +G+      Y 
Sbjct: 293 KWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYD 352

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            L+           A E  E+M S    P +   N ++  LC   +  + +EV   +  +
Sbjct: 353 PLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEV 412

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           G  PN  +Y+ L  A     D    L ++ +    G+ P+ + +  +I    R
Sbjct: 413 GCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCR 465



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 137/327 (41%), Gaps = 37/327 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+N ++         + AF++LR +   G K D   Y  L+ T    GK     ++
Sbjct: 241 PDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKL 300

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM++ G +PNV T+  LI    + G+V +A      M+ K +KPD   ++ LI    +
Sbjct: 301 ISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCR 360

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D A + L  M ++     PD +    +M      G+ D+A EV++ + +       
Sbjct: 361 EGRLDLATEFLEYMISD--GCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNV 418

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y    +    +GD   A  +   +  +G+ PDE+  ++LI      G V+ A E+L +
Sbjct: 419 SSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVD 478

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                                              M+S + +P V + N ++  LC  ++
Sbjct: 479 -----------------------------------MQSGRYRPNVVSYNIILLGLCKVNR 503

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
               +EVL+ M   G  PN  TY +L+
Sbjct: 504 ANDAIEVLAAMTEKGCQPNETTYILLI 530



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 44/196 (22%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           + Y+ LI    R+GR+    + LE M   G L     Y+     +C++ KA  +A   F+
Sbjct: 349 YCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKA-DQALEVFE 407

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P +S++N L S   SS D   A +++  +   G+  D   Y +LI+   + G
Sbjct: 408 KLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDG 467

Query: 142 KVDAMFE-----------------------------------VFHEMVNAGIEPNVHTYG 166
            VD   E                                   V   M   G +PN  TY 
Sbjct: 468 MVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYI 527

Query: 167 ALIDGCAKAGQVAKAF 182
            LI+G   +G  A+A 
Sbjct: 528 LLIEGIGFSGLRAEAM 543


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 210/439 (47%), Gaps = 16/439 (3%)

Query: 31  SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
           SY+RL     I + + ++   +  G +     Y+A      +S++ I  A   FK +   
Sbjct: 143 SYSRLCL---IDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQS 199

Query: 88  -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             +P + T+N+L+     + + + A +    +++ G   +   Y TLI    K  K+D  
Sbjct: 200 QVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDG 259

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           FE+   M   G+EPN+ +Y  +I+G  + G++ +       M  +    D V +N LI  
Sbjct: 260 FELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKG 319

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G   +A  + AEM    H + P  IT  +L+ +   AG ++RA E    +    + 
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLC 377

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAF 324
                YT  ++  SQ G    A  V  +M   G  P  V  +ALI+  GH  AGK+  A 
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALIN--GHCIAGKMVDAI 435

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +L++ K +G++  ++SYS+++     + +  +AL +   M +  +KP   T ++LI   
Sbjct: 436 AVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGF 495

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C+  +  +  ++  +M  +GL P+  TY+ L+ A   + D++  + L ++  E GV+P++
Sbjct: 496 CEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDV 555

Query: 445 VMFKCIIGMCSRRYEKART 463
           V +  +I   ++   +ART
Sbjct: 556 VTYSVLINGLNK---QART 571



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 193/440 (43%), Gaps = 48/440 (10%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  + +YN LIR     G +   +   + ME+KG L     Y+      CK +K I + 
Sbjct: 201 VSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRK-IDDG 259

Query: 81  FRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           F   + +      P L ++N++++ +C   +  E +F VL  + + G   D   Y TLI 
Sbjct: 260 FELLRSMALKGLEPNLISYNVVINGLCREGRMKEISF-VLTEMNKRGYSLDEVTYNTLIK 318

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K G       +  EM+  G+ P+V TY +LI    KAG + +A      MR + + P
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCP 378

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           +   +  L+    Q G ++ A+ VL EM    +   P  +T  AL+     AG       
Sbjct: 379 NERTYTTLVDGFSQKGYMNEAYRVLKEMID--NGFSPSVVTYNALINGHCIAG------- 429

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
             KM+                           A +V +DM +KG+ PD V  S ++    
Sbjct: 430 --KMVD--------------------------AIAVLEDMKEKGLTPDVVSYSTVLSGFC 461

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            +  V+ A  + ++   +GI    I+YSSL+      +  ++A +L++ M  + L P   
Sbjct: 462 RSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEF 521

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T  ALI A C    L K +++ ++M   G+ P+ +TYS+L+    ++        LL + 
Sbjct: 522 TYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKL 581

Query: 436 KEDGVIPNLVMFKCIIGMCS 455
             +  +P+ V +  +I  CS
Sbjct: 582 FYEESVPSDVTYHTLIENCS 601



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 205/465 (44%), Gaps = 57/465 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKS---QKAIKEAFRFFKLVP 88
           N L R+GR+ E   +L +M ++G   +D+V Y+      CK     +A+       +   
Sbjct: 283 NGLCREGRMKEISFVLTEMNKRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGL 341

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P++ T+  L+     + +   A + L  ++  GL  + + YTTL+   ++ G ++  + 
Sbjct: 342 SPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  EM++ G  P+V TY ALI+G   AG++  A      M+ K + PD V ++ +++   
Sbjct: 402 VLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFC 461

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +S  VD A  V  +M A+   + PD IT  +L++      +   A +++  + +  +   
Sbjct: 462 RSYDVDEALRVKRKMVAK--GIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPD 519

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  IN     GD + A  ++++M +KGV+PD V  S LI+      +   A  +L 
Sbjct: 520 EFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLL 579

Query: 329 EAKNQGISVGIISYSSLMGACSNAK---------------NWQKALELYEHMKSIKLKPT 373
           +   +      ++Y +L+  CSN +                  +A +++E M     KP 
Sbjct: 580 KLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPD 639

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL------------------ 415
            +  N +I   C G  + K   +  +M   G   +T+T   L                  
Sbjct: 640 GTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIA 699

Query: 416 --LVACE---------------RKDDVEVGLMLLSQAKEDGVIPN 443
             L +CE               R+ +++V L +L++  +DG +PN
Sbjct: 700 NVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 116/268 (43%), Gaps = 19/268 (7%)

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMN 378
           ++ A  I+  ++  G   G++SY++++ A   +K N   A  +++ M   ++ P V T N
Sbjct: 150 IDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYN 209

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI   C    L   +     M+  G  PN +TY+ L+    +   ++ G  LL      
Sbjct: 210 ILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALK 269

Query: 439 GVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS-GRPQIENKWTSL----------- 485
           G+ PNL+ +  +I G+C  R  + + ++  +   N  G    E  + +L           
Sbjct: 270 GLEPNLISYNVVINGLC--REGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFH 327

Query: 486 -ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 544
            AL+++ E +  G  P+V   + ++  +    N +     ++ + V           +L+
Sbjct: 328 QALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLV 387

Query: 545 DGFGE--YDPRAFSLLEEAASFGIVPCV 570
           DGF +  Y   A+ +L+E    G  P V
Sbjct: 388 DGFSQKGYMNEAYRVLKEMIDNGFSPSV 415



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 24/216 (11%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +Y+ LI+    Q R  E  DL ++M R GL   +  Y A     C     QKAI+     
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEM 546

Query: 84  FKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--- 139
            +    P + T+++L++ +   ++  E    +L+L  E  + +D   Y TLI  C+    
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVT-YHTLIENCSNIEF 605

Query: 140 ------------SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
                        G +    +VF  M+    +P+   Y  +I G  + G + KA+  Y  
Sbjct: 606 KSVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKE 665

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           M         V   AL+    + G V+    V+A +
Sbjct: 666 MVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIANV 701


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 217/469 (46%), Gaps = 24/469 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N  +      + +  L  M  +G + +   ++     + +S    K  + F +L     L
Sbjct: 97  NAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELKSKVVL 156

Query: 93  S--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              +F +++  C  +      F++L +++E GL  +  +YTTLI  C K G V     +F
Sbjct: 157 DAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLF 216

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M   G+ PN HTY  L++G  K G   + F  Y  M+   + P+   +N LI+     
Sbjct: 217 CKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCND 276

Query: 211 GAVDRAFDVLAEMNAE--VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
           G VD+AF V AEM  +     V   +I IG L +         +  E  K++HK N  G 
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRG-------KKFGEAVKLVHKVNKVGL 329

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           +P +  Y I IN        + A  +++ +   G+ P  V  + LI        +  A +
Sbjct: 330 SPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALD 389

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +++E + + I+   ++Y+ L+ A +   + +KA E++  M+   L P V T + L+  LC
Sbjct: 390 LVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLC 449

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               + +  ++   +  + L PN++ Y+ ++    ++      L LL++  + G++PN+ 
Sbjct: 450 VHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVA 509

Query: 446 MFKCIIGMCSR--RYEKARTLNEHVLSFNSG-RPQIENKWTSLALMVYR 491
            F   IG+  R  ++++A  L   ++  NSG +P +     SL  MV++
Sbjct: 510 SFCSTIGLLCRDEKWKEAELLLGQMI--NSGLKPSV-----SLYKMVHK 551



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 197/443 (44%), Gaps = 24/443 (5%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           LY T++     S   D      H M++ G  P  +T+  L+    ++    KA+  +  +
Sbjct: 91  LYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNEL 150

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           +SK V  D   F  +I  C ++G   + F +LA +  E   + P+ +    L+  C   G
Sbjct: 151 KSK-VVLDAYSFGIMIKGCCEAGYFVKGFRLLAML--EEFGLSPNVVIYTTLIDGCCKDG 207

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            V  A+ ++  +++  +   P  Y++ +N   + G       +Y++M + G++P+    +
Sbjct: 208 NVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYN 267

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            LI    + G V+ AF++  E + +GI+ G+++Y+ L+G     K + +A++L   +  +
Sbjct: 268 CLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKV 327

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            L P + T N LI   CD  ++   + + + +KS GL P  +TY+ L+    + +++   
Sbjct: 328 GLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGA 387

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 488
           L L+ + +E  + P+ V +  +I   +R     +    H L   SG   + + +T   L+
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGL--VPDVYTYSVLL 445

Query: 489 VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFG 548
                 V G +     + K LG + L  N+ I   ++        +              
Sbjct: 446 --HGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSY------------- 490

Query: 549 EYDPRAFSLLEEAASFGIVPCVS 571
               RA  LL E    G+VP V+
Sbjct: 491 ----RALRLLNEMVQSGMVPNVA 509


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 196/419 (46%), Gaps = 25/419 (5%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++  L++    + ++  A QVLR +    ++ +  +Y T+I +  K   V    ++  EM
Sbjct: 171 SYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEM 230

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +   I P+V TY  LI GC   G++ +A G +  M  KN+KPD   FN L+    + G +
Sbjct: 231 IVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEM 290

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            +A +VLA M  +   VD + +T  +LM       Q ++A  V+  + +  +    + Y+
Sbjct: 291 KKARNVLAVMIKQ--GVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYS 348

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I IN   +T   + A +++ +M  K + P+ V  ++LID     G++  A++++ E  N+
Sbjct: 349 IMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNR 408

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G    +I+YSSL+ A        KA+ L   +K   ++P + T   L+  LC   +L   
Sbjct: 409 GQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDA 468

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
             V  D+   G   +   Y++++    ++   +  L L+S+ +++G IP+ V ++ ++  
Sbjct: 469 QAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLV-- 526

Query: 454 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
                                R   EN     A+ + RE IV G+     + S  + C+
Sbjct: 527 ---------------------RALFENDKNDKAVKLLREMIVQGSAVGSNISSNSMLCV 564



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 184/384 (47%), Gaps = 8/384 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L TFN+L++          AF VL  + + G   D    TTLI     +GKV      
Sbjct: 97  PDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHF 156

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +++  G   +  +YG LI+G  K G+   A      +    V+P+ V++N +I +  +
Sbjct: 157 HDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCK 216

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              V  A D+ +EM   V  + PD +T   L+  C   G++  A  ++  +   NIK  P
Sbjct: 217 DKLVIHASDLCSEM--IVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIK--P 272

Query: 270 EVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +VYT  I ++   + G+ + A +V   M K+GV  + V  ++L+D      +   A  + 
Sbjct: 273 DVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVF 332

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                +G++  + SYS ++      K   +A+ L++ M S  + P   T N+LI  L   
Sbjct: 333 NTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKY 392

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++    +++++M + G   + ITYS LL A  +   V+  + L+++ K+ G+ PN+  +
Sbjct: 393 GRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTY 452

Query: 448 KCII-GMCSR-RYEKARTLNEHVL 469
             ++ G+C   R + A+ + + +L
Sbjct: 453 TILVDGLCKNGRLKDAQAVYQDLL 476



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 150/374 (40%), Gaps = 26/374 (6%)

Query: 213 VDRAFDVLAEMNAEVH---PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +D   D ++  N  +H   PV P       ++ +         A    K +    I+   
Sbjct: 41  IDNVDDAVSSFNHILHMRNPVQPI-FEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDL 99

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             + I INC    G   FA SV   + K G  PD V ++ LI      GKV  A     +
Sbjct: 100 FTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDD 159

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G  +  +SY +L+         + AL++   +  + ++P V   N +I +LC    
Sbjct: 160 VIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKL 219

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +    ++ S+M    + P+ +TY+ L+  C     ++  + L +Q     + P++  F  
Sbjct: 220 VIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNI 279

Query: 450 II-GMCSR-RYEKART---------LNEHVLSFNSGRP-----QIENKWTSLALMVYREA 493
           ++ G+C     +KAR          ++ +++++NS        + ENK T     V+   
Sbjct: 280 LVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKAT----FVFNTM 335

Query: 494 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD-- 551
              G  P V+  S ++  L      D    L + +   + A       SLIDG  +Y   
Sbjct: 336 ARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRI 395

Query: 552 PRAFSLLEEAASFG 565
             A+ L+ E  + G
Sbjct: 396 SDAWDLVNEMHNRG 409



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 7/216 (3%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVC 102
           +   M R+G+    + Y      +CK+ K + EA   FK + +    P   T+N L+   
Sbjct: 331 VFNTMARRGVTPDVQSYSIMINGLCKT-KMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGL 389

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
                   A+ ++  +   G  AD   Y++L+    K+ +VD    +  ++ + GI+PN+
Sbjct: 390 LKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNI 449

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
           +TY  L+DG  K G++  A   Y  +  K    D  ++N ++    + G  D A  ++++
Sbjct: 450 YTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSK 509

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           M  E +   PD +T   L++A     + D+A ++ +
Sbjct: 510 M--EDNGCIPDAVTYETLVRALFENDKNDKAVKLLR 543



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 81/197 (41%), Gaps = 36/197 (18%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + GRIS+  DL+ +M  +G                  Q A          
Sbjct: 381 TYNSLIDGLLKYGRISDAWDLVNEMHNRG------------------QPA---------- 412

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
                + T++ L+     +   + A  ++  +++ G++ +   YT L+    K+G++   
Sbjct: 413 ----DVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDA 468

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             V+ +++  G   +V  Y  +++G  K G   +A      M      PD V +  L+ A
Sbjct: 469 QAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRA 528

Query: 207 CGQSGAVDRAFDVLAEM 223
             ++   D+A  +L EM
Sbjct: 529 LFENDKNDKAVKLLREM 545


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 195/427 (45%), Gaps = 20/427 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P   TF  LM       +  GA ++   +  AG  +       L+    K G+++ +  
Sbjct: 243 SPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLS 302

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EM N G  P+  T+ +L++G  + G V  A     +M  +   PD   +N+LI    
Sbjct: 303 FIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLC 362

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V+ A ++L +M   +    P+ +T   L+       QV+ A E+ +++    I   
Sbjct: 363 KLGEVEEAVEILNQMI--LRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGI--L 418

Query: 269 PEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+V T    I     T +   A  ++++M  KG  PDE   + LID     G++E A  +
Sbjct: 419 PDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSL 478

Query: 327 LQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           L+E ++ G S  +++Y++L+ G C N K  ++A E+++ M+   +   V T N LI  LC
Sbjct: 479 LKEMESSGCSRNVVTYNTLIDGFCKN-KRIEEAEEIFDEMELQGISRNVVTYNTLIDGLC 537

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              ++ +  +++  M   GL P+  TY+ LL    R  D++    ++     +G  P+ V
Sbjct: 538 KNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSV 597

Query: 446 MFKCIIGMCSR--------RYEKARTLNEHVLSFNSGRPQIE----NKWTSLALMVYREA 493
            +  +I   S+        R  +   L   VL+  +  P I+     K TS A+ ++RE 
Sbjct: 598 TYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREM 657

Query: 494 IVAGTIP 500
           +  G  P
Sbjct: 658 MEKGDPP 664



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 182/426 (42%), Gaps = 8/426 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            I +G ++  + + E M   G    +   +      CK  + I+E   F   + N    P
Sbjct: 256 FIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGR-IEEVLSFIDEMSNEGFRP 314

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              TFN L++        + A ++L ++ + G   D   Y +LI    K G+V+   E+ 
Sbjct: 315 DRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEIL 374

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           ++M+     PN  TY  LI    K  QV +A     ++ SK + PD   FN+LI     +
Sbjct: 375 NQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT 434

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
                A ++  EM  +     PD  T   L+ +  + G+++ A  + K +          
Sbjct: 435 NNHRLAMELFEEMKTK--GCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVV 492

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   I+   +    E A  ++D+M  +G+  + V  + LID      +VE A +++ + 
Sbjct: 493 TYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQM 552

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +G+     +Y+SL+     A + +KA ++ + M S   +P   T   LI  L    ++
Sbjct: 553 LMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRV 612

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                +L  ++  G+     TY+ ++ A  R+      + L  +  E G  P+ V +K +
Sbjct: 613 ELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVV 672

Query: 451 I-GMCS 455
             G+CS
Sbjct: 673 FRGLCS 678



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 165/388 (42%), Gaps = 8/388 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L R G +   +++L+ M ++G       Y++  F +CK  + ++EA      +     
Sbjct: 324 NGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGE-VEEAVEILNQMILRDF 382

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P   T+N L+S        E A ++ R++   G+  D   + +LI     +       E
Sbjct: 383 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAME 442

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM   G  P+  TY  LID     G++ +A      M S     + V +N LI    
Sbjct: 443 LFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFC 502

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++  ++ A ++  EM  E+  +  + +T   L+       +V+ A ++   +    +K  
Sbjct: 503 KNKRIEEAEEIFDEM--ELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPD 560

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   +    + GD + A  +   MT  G  PD V    LI     AG+VE A  +L+
Sbjct: 561 KFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLR 620

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD-G 387
             + +G+ +   +Y+ ++ A    K   +A+ L+  M      P   T   +   LC  G
Sbjct: 621 TVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGG 680

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             + + ++ L +M   G  P+  ++ +L
Sbjct: 681 GPIGEAVDFLVEMTDKGFLPDFSSFLML 708



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 162/370 (43%), Gaps = 23/370 (6%)

Query: 109 EGAFQVLRLVQEAGLKADCKL----YTTLITTCAKSGKVDAMFEVFHEMVNA-------- 156
           +G+F  +R V +      C++    +  LI + AK       FE+F E V          
Sbjct: 118 DGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAK-------FELFDEAVAVVDIMEEEF 170

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G++ +  TY  L++      ++         M S+ +KPD   FN LI A  ++  +  A
Sbjct: 171 GLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPA 230

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             ++ EM +  + + PD  T   LM+     G ++ A  + + +       +     + +
Sbjct: 231 ILMMEEMGS--YGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLV 288

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
           +   + G  E   S  D+M+ +G  PD    ++L++     G V+ A EIL     +G  
Sbjct: 289 HGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFD 348

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             I +Y+SL+         ++A+E+   M      P   T N LI+ LC  +Q+ +  E+
Sbjct: 349 PDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATEL 408

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
              + S G+ P+  T++ L+      ++  + + L  + K  G  P+   +  +I  +CS
Sbjct: 409 ARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCS 468

Query: 456 R-RYEKARTL 464
           R R E+A +L
Sbjct: 469 RGRLEEALSL 478



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 159/389 (40%), Gaps = 12/389 (3%)

Query: 74  QKAIKEAFRFFKLVPNPTLS-----TFNMLMSVCASSKDSEGAFQVLRLV-QEAGLKADC 127
           Q+A+  +F    L P+PT       T   L        D +    +L    ++       
Sbjct: 48  QQAVSPSFS--TLSPSPTTQLPQNFTPKQLRDALRRQSDEDSILDLLDWASKQPNFVPSS 105

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
            +Y  ++    K G   +M  V  EM + G E    T+  LI+  AK     +A     I
Sbjct: 106 VIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDI 165

Query: 188 MRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           M  +  +K D   +N L+        +     V + M +    + PD  T   L+KA   
Sbjct: 166 MEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVS--RGIKPDVTTFNILIKALCR 223

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           A Q+  A  + + +  Y +    + +T  +    + G+   A  + + M   G     V 
Sbjct: 224 AHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVT 283

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           ++ L+      G++E     + E  N+G      +++SL+       + + ALE+ + M 
Sbjct: 284 VNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVML 343

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
                P + T N+LI  LC   ++ + +E+L+ M      PNT+TY+ L+    +++ VE
Sbjct: 344 QEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVE 403

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
               L       G++P++  F  +I G+C
Sbjct: 404 EATELARVLTSKGILPDVCTFNSLIQGLC 432


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 163/322 (50%), Gaps = 4/322 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y TL+    K+G+     ++   + +    PNV  Y A+IDG  K   V +A+  Y  M 
Sbjct: 118 YGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMD 177

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           ++ + P+ + +N LI A   +G +  AF +L EM   +  ++PD  T   L+ A    G+
Sbjct: 178 AREIFPNVITYNTLICAFCLAGQLMGAFSLLHEM--ILKNINPDVYTFSILIDALCKEGK 235

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
              A++++  + +  +      Y I IN   +    + A ++  +M  K ++PD V  ++
Sbjct: 236 --NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNS 293

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LID    +G++ +A  ++ E  ++G    +++Y+SL+ A    +N  KA  L+  MK   
Sbjct: 294 LIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERG 353

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           ++PT+ T  ALI  LC G +L    E+   +   G C +  TY++++    ++   +  L
Sbjct: 354 IQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEAL 413

Query: 430 MLLSQAKEDGVIPNLVMFKCII 451
            + S+ +++G IPN V F+ II
Sbjct: 414 AIKSKMEDNGCIPNAVTFEIII 435



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 131/303 (43%), Gaps = 14/303 (4%)

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M  K ++ + V  + LI      G +  +F +L ++    +   P+ IT   LMK     
Sbjct: 36  MDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYX--PNTITWTTLMKGLCLK 93

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G+V +    +  +     +     Y   +N   +TG+   A  +   +  +   P+ V  
Sbjct: 94  GEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMY 153

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           SA+ID       V  A+++  E   + I   +I+Y++L+ A   A     A  L   M  
Sbjct: 154 SAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMIL 213

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDD 424
             + P V T + LI ALC   +  K  ++   M  +G+ PN  +Y+I+   L  C+R D+
Sbjct: 214 KNINPDVYTFSILIDALCKEGKNAK--QIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDE 271

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKW 482
               + LL +     ++P+ V +  +I G+C S R   A  L   +   + G+P     +
Sbjct: 272 ---AMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEM--HHRGQPADVVTY 326

Query: 483 TSL 485
           TSL
Sbjct: 327 TSL 329



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 106/254 (41%), Gaps = 41/254 (16%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           HA     V+  ++SYN +I    +  R+ E ++LL +M  K ++                
Sbjct: 242 HAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMV---------------- 285

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
                           P   T+N L+     S     A  ++  +   G  AD   YT+L
Sbjct: 286 ----------------PDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSL 329

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    K+  +D    +F +M   GI+P ++TY ALIDG  K G++  A   +  +  K  
Sbjct: 330 LDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGC 389

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
             D   +  +I+   + G  D A  + ++M  E +   P+ +T   ++++     + D+A
Sbjct: 390 CIDVWTYTVMISGLCKEGMFDEALAIKSKM--EDNGCIPNAVTFEIIIRSLFEKDENDKA 447

Query: 254 REVYKMIHKYNIKG 267
               K++H+   KG
Sbjct: 448 E---KLLHEMIAKG 458



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 135/331 (40%), Gaps = 46/331 (13%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++   + +YN LI      G++     LL +M  K +      +      +CK  K  
Sbjct: 178 AREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNA 237

Query: 78  KEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           K+ F    ++  NP + ++N++++     K  + A  +LR +    +  D   Y +LI  
Sbjct: 238 KQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDG 297

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             KSG++ +   + +EM + G   +V TY +L+D   K   + KA   +  M+ + ++P 
Sbjct: 298 LCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPT 357

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
              + ALI    + G +  A ++   +                L+K C          +V
Sbjct: 358 MYTYTALIDGLCKGGRLKNAQELFQHL----------------LVKGC--------CIDV 393

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +              YT+ I+   + G ++ A ++   M   G IP+ V    +I     
Sbjct: 394 W-------------TYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFE 440

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
             + + A ++L E     I+ G++ + +  G
Sbjct: 441 KDENDKAEKLLHEM----IAKGLLGFRNFHG 467



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 12/229 (5%)

Query: 256 VYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           V  +  + ++KG  +     +I INC    G   F+ S+   + K G  P+ +  + L+ 
Sbjct: 29  VISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMK 88

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G+V+       +   Q      +SY +L+         + A++L   ++    +P
Sbjct: 89  GLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRP 148

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V   +A+I  LC    + +  ++ S+M +  + PN ITY+ L+ A      +     LL
Sbjct: 149 NVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLL 208

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL---------NEHVLSFN 472
            +     + P++  F  +I    +  + A+ +         N +V S+N
Sbjct: 209 HEMILKNINPDVYTFSILIDALCKEGKNAKQIFHAMVQMGVNPNVYSYN 257



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 44/88 (50%)

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           II ++ ++G+    K +   + L + M    ++  + T++ LI   C   Q+  +  +L 
Sbjct: 10  IIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLG 69

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVE 426
            +  LG  PNTIT++ L+     K +V+
Sbjct: 70  KILKLGYXPNTITWTTLMKGLCLKGEVK 97


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 208/438 (47%), Gaps = 10/438 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT- 91
           N  ++   + + +    +M  KGL+    ++++   ++ +S    ++A+ FF  +     
Sbjct: 101 NAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSN-CFEKAWLFFNELKERVK 159

Query: 92  --LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
             + +F +++  C  + + + +FQ+L L+Q+ GL  +  +YTTLI  C K+G ++     
Sbjct: 160 FDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLF 219

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CG 208
           F +M   G+  N +T+  LI+G  K G     F  +  M+   + P+   +N L+   CG
Sbjct: 220 FDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCG 279

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G + RAFD+  EM      V+ + +T   L+       +V  A ++   + K  +   
Sbjct: 280 E-GKICRAFDLFDEMRER--GVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPN 336

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I      G+ + A S+ D +   G+ P  V  + LI+    AG  +   ++ +
Sbjct: 337 LITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAR 396

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E + +GIS   ++ + L+ A    +  +KA ++Y  M+   L P V     LI  LC   
Sbjct: 397 EMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKG 456

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            + ++ ++   M  + + P+ + Y+ ++    ++D+    L LL + +  G++PN+  + 
Sbjct: 457 NMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYS 516

Query: 449 CIIGMCSR--RYEKARTL 464
            IIG+  +  ++E+A  L
Sbjct: 517 SIIGVLCKDGKWEEAEVL 534



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 195/449 (43%), Gaps = 39/449 (8%)

Query: 72  KSQKAIKEAFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           KSQ  + +A  FF       LV  P +  FN L+     S   E A+     ++E  +K 
Sbjct: 105 KSQ-LLDKALIFFNEMVDKGLVFRPNI--FNSLLGSLVRSNCFEKAWLFFNELKER-VKF 160

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   +  +I  C ++G +D  F++   + + G+ PNV  Y  LIDGC K G + +A   +
Sbjct: 161 DVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFF 220

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M    +  ++  F  LI    + G     FD+  +M  +++ + P+  T   LM    
Sbjct: 221 DKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKM--KINGLFPNLYTYNCLMNEYC 278

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN-CCSQTGDWEFACSVYDDMTKKGVIPDE 304
             G++ RA +++  + +  ++     Y   I   C +   WE A  + D M K  V P+ 
Sbjct: 279 GEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWE-AEKLVDQMKKAAVSPNL 337

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           +  + LI      G ++ A  +L + K+ G+S  +++Y+ L+   S A NW+   +L   
Sbjct: 338 ITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLARE 397

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M+   + P+  T   LI A     ++ K  ++ S M+  GL P+   Y +L+     K +
Sbjct: 398 MEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGN 457

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 483
           ++    L     E  V P+ V++  +I G C                        +N + 
Sbjct: 458 MKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKE----------------------DNSYR 495

Query: 484 SLALMVYREAIVAGTIPTVEVVSKVLGCL 512
           +L L+  RE    G +P V   S ++G L
Sbjct: 496 ALRLL--REMEAKGLVPNVASYSSIIGVL 522



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 138/295 (46%), Gaps = 4/295 (1%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P L T+N LM+  C   K    AF +   ++E G++A+   Y TLI    +  +V    +
Sbjct: 265 PNLYTYNCLMNEYCGEGKICR-AFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEK 323

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M  A + PN+ TY  LI G    G + KA      ++S  + P  V +N LI    
Sbjct: 324 LVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYS 383

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G      D+  EM  E   + P  +T   L+ A     ++++A ++Y  + K+ +   
Sbjct: 384 KAGNWKGVADLAREM--EGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPD 441

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             VY + I+     G+ + +  ++  M +  V P +V  + +I           A  +L+
Sbjct: 442 VYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLR 501

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           E + +G+   + SYSS++G       W++A  L + M  ++LKP+ S +N +  A
Sbjct: 502 EMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLDKMIELQLKPSASILNMISKA 556



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 188/425 (44%), Gaps = 25/425 (5%)

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y ++I+   K+  + KA   +  M  K +     +FN+L+ +  +S   ++A+    E+ 
Sbjct: 96  YESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNELK 155

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
             V     D  + G ++K C   G +D++ ++  ++    +     +YT  I+ C + GD
Sbjct: 156 ERV---KFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGD 212

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            E A   +D M + G++ ++   + LI+     G  +  F++ ++ K  G+   + +Y+ 
Sbjct: 213 IERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNC 272

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           LM          +A +L++ M+   ++  V T N LI  +C  +++ +  +++  MK   
Sbjct: 273 LMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAA 332

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKAR 462
           + PN ITY+ L+       +++    LL Q K +G+ P+LV +  +I   S+   ++   
Sbjct: 333 VSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVA 392

Query: 463 TLNEHVLSFNSGRPQIENKWTSLALM--------------VYREAIVAGTIPTVEVVSKV 508
            L   +     GR    +K T   L+              +Y      G +P V V   +
Sbjct: 393 DLAREM----EGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVL 448

Query: 509 LGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGI 566
           +  L +  N     +L  ++G            ++I G+ + D   RA  LL E  + G+
Sbjct: 449 IHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGL 508

Query: 567 VPCVS 571
           VP V+
Sbjct: 509 VPNVA 513


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 183/380 (48%), Gaps = 8/380 (2%)

Query: 79  EAFRFFKLVPNPTLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           +A+R   L  N  ++T+    M+ S C + +  E    V+  +++  +  D   +  ++ 
Sbjct: 145 DAYRLV-LSSNSEVNTYTLNIMVHSYCKTLQFGE-VDTVISEMEKRCVFPDVVTHNVMVD 202

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              ++G V+A   +   MV+ GI+P + TY +++ G  + G+  KA   +  M +  V P
Sbjct: 203 ARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAP 262

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D   FN LI    ++G ++ A     EM      V PD ++   L+      G++D A E
Sbjct: 263 DVRSFNMLIGGFCRAGELEEALRFYKEMRGR--RVTPDVVSFSCLIGLFTRRGEMDHAAE 320

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
             + + ++ +     +YT+ I    + G    A  V D+M   G +PD V  + L++   
Sbjct: 321 YLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLC 380

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
              ++  A E+L E K +G+   + ++++L+       N +KAL+ ++ +   +L+P + 
Sbjct: 381 KERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIV 440

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N LI  +C    L K  E+  DM S  + PN +TYSIL+ +   K  V+     L + 
Sbjct: 441 TYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEM 500

Query: 436 KEDGVIPNLVMFKCII-GMC 454
              G++PN++ +  II G C
Sbjct: 501 VNKGIVPNIMTYNSIIKGYC 520



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/443 (22%), Positives = 192/443 (43%), Gaps = 18/443 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVP-NPTL 92
            R G +   + L++ M  KG+      Y++    + ++ +    +E FR        P +
Sbjct: 205 FRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDV 264

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            +FNML+     + + E A +  + ++   +  D   ++ LI    + G++D   E   E
Sbjct: 265 RSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLRE 324

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G+ P+   Y  +I G  +AG + +A      M +    PD V +N L+    +   
Sbjct: 325 MREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERR 384

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +  A ++L EM     P  PD  T   L+      G +++A + +  I    ++     Y
Sbjct: 385 LSDAEELLNEMKERGVP--PDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTY 442

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+   + GD   A  ++DDM  + + P+ V  S LID     G+V+ AF  L E  N
Sbjct: 443 NTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVN 502

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +GI   I++Y+S++     + N  K  +    M+  K+ P + T N LI       ++ +
Sbjct: 503 KGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHE 562

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
              +L  M++  + P+ +TY++++       +++    +  +    G+ P+         
Sbjct: 563 AFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPD--------- 613

Query: 453 MCSRRYEKARTLNEHVLSFNSGR 475
               RY     +N HV++ NS +
Sbjct: 614 ----RYTYMSMINGHVVAGNSKK 632



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 181/416 (43%), Gaps = 48/416 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L+R GR  +  ++   M+  G+    + ++      C++ + ++EA RF+K +      P
Sbjct: 239 LLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGE-LEEALRFYKEMRGRRVTP 297

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + +F+ L+ +     + + A + LR ++E GL  D  +YT +I    ++G +     V 
Sbjct: 298 DVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVR 357

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EMV  G  P+V TY  L++G  K  +++ A      M+ + V PD   F  LI    + 
Sbjct: 358 DEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRD 417

Query: 211 GAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
           G +++A   FD +++       + PD +T   L+      G + +A E++  +H   I  
Sbjct: 418 GNIEKALQFFDTISDQR-----LRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFP 472

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP------------------------- 302
               Y+I I+   + G  + A +  D+M  KG++P                         
Sbjct: 473 NHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFL 532

Query: 303 ----------DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
                     D +  + LI      GK+  AF +L+  +N+ +    ++Y+ ++   S  
Sbjct: 533 PKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVH 592

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
            N Q+A  +Y+ M +  ++P   T  ++I          K+ ++  +M   GL P+
Sbjct: 593 GNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 132/278 (47%), Gaps = 7/278 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++ R+S+  +LL +M+ +G+      +       C+    I++A +FF  + +   
Sbjct: 377 NGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGN-IEKALQFFDTISDQRL 435

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N L+       D   A ++   +    +  +   Y+ LI +  + G+VD  F 
Sbjct: 436 RPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFA 495

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EMVN GI PN+ TY ++I G  ++G V+K       MR   V PD + +N LI    
Sbjct: 496 FLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYV 555

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  AF++L  M  E   V PD +T   ++   +  G +  A  VYK +    I+  
Sbjct: 556 KEGKMHEAFNLLKIMENE--NVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPD 613

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
              Y   IN     G+ + +  ++D+M +KG+ PD+ F
Sbjct: 614 RYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPDDKF 651



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 121/258 (46%), Gaps = 2/258 (0%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P   VF+ LI    QS     AF+    +    H V        AL+ A + AG      
Sbjct: 87  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLD--HRVPIPAAASNALLAALSRAGWPHLTA 144

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           + Y+++   N +       I ++   +T  +    +V  +M K+ V PD V  + ++D  
Sbjct: 145 DAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDAR 204

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             AG VEAA  ++    ++GI  G+++Y+S++        W KA E++  M +  + P V
Sbjct: 205 FRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDV 264

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            + N LI   C   +L + +    +M+   + P+ +++S L+    R+ +++     L +
Sbjct: 265 RSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLRE 324

Query: 435 AKEDGVIPNLVMFKCIIG 452
            +E G++P+ V++  +IG
Sbjct: 325 MREFGLMPDGVIYTMVIG 342



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 93/202 (46%), Gaps = 11/202 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    RQG + +  +L +DM  + +      Y     + C+  + +  AF F   
Sbjct: 441 TYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQ-VDNAFAFLDE 499

Query: 87  VPN----PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + N    P + T+N ++   C S   S+G  Q L  ++   +  D   Y TLI    K G
Sbjct: 500 MVNKGIVPNIMTYNSIIKGYCRSGNVSKGQ-QFLPKMRHDKVMPDLITYNTLIHGYVKEG 558

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+   F +   M N  ++P+  TY  +I G +  G + +A   Y  M ++ ++PDR  + 
Sbjct: 559 KMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYM 618

Query: 202 ALITACGQSGAVDRAFDVLAEM 223
           ++I     +G   ++F +  EM
Sbjct: 619 SMINGHVVAGNSKKSFQLHDEM 640


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 116/421 (27%), Positives = 190/421 (45%), Gaps = 51/421 (12%)

Query: 63  YHARFFNVCKSQKAIKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
           Y A     C+  + I +A R F       LVPN  L +  +L+     +K S  A +  R
Sbjct: 12  YAALLRGFCRGGE-IDQAQRCFDEMRSKNLVPNVFLCS--ILIDGLCKAKRSIDALRCFR 68

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
            +Q +G+ AD  +YT L++   K  ++D    + HEM + G EPNV TY +LIDG  K  
Sbjct: 69  AMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNN 128

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVD---- 231
           +  +A   +  M+S    P  V +N L+    ++G ++RA  +  EM +   H +D    
Sbjct: 129 EPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCS 188

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P+ IT   L+     A +V +A E                                   +
Sbjct: 189 PNVITYSVLIDGLCKANRVSQAVE-----------------------------------L 213

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
            + M  +G  PD +  + L+D      KV AA+E+L+E  + G    +++Y+SL+     
Sbjct: 214 LESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCR 273

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A+    AL L   M      P V T   LI  LC   ++     +L+DM   G  P+ + 
Sbjct: 274 ARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMI 333

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 469
           Y++L+    + D V+  + LL +A   G+ P++V +  +I G+C S R ++A  L  +V 
Sbjct: 334 YNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVK 393

Query: 470 S 470
           S
Sbjct: 394 S 394



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 172/349 (49%), Gaps = 4/349 (1%)

Query: 89  NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +P + T+++L+  +C +++ S+ A ++L  ++  G   D   YT L+    K  KV A +
Sbjct: 188 SPNVITYSVLIDGLCKANRVSQ-AVELLESMKARGCSPDVITYTILVDGLCKESKVAAAW 246

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           EV  EM++AG  PN+ TY +L+ G  +A +V+ A      M  +   P+ V +  LI   
Sbjct: 247 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 306

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G V  A  +LA+M  +     PD +    L+     A QVD +  + +      IK 
Sbjct: 307 CKVGRVKDACAMLADMIDKGGT--PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKP 364

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y+  I    ++   + AC +   +  +G  PD +  S LID    AGKV+ AF++ 
Sbjct: 365 DVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLY 424

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +     G    +++YS+L+     A    +A  L   M  +   P+  T N+LI  LCD 
Sbjct: 425 EVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDL 484

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
           + L + +E++ +M+     P+ +TY+IL+    R + V+  ++LL QAK
Sbjct: 485 NHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAK 533



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/452 (24%), Positives = 204/452 (45%), Gaps = 31/452 (6%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDK-------VYHARFFNVCK 72
           + S  + +YN L+    R G++   + L ++M  +   DMD         Y      +CK
Sbjct: 144 ECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCK 203

Query: 73  SQKAIKEAFRFFKLVP----NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADC 127
           + + + +A    + +     +P + T+ +L+  +C  SK    A++VLR + +AG   + 
Sbjct: 204 ANR-VSQAVELLESMKARGCSPDVITYTILVDGLCKESK-VAAAWEVLREMLDAGCVPNL 261

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
             Y +L+    ++ +V     +  +M   G  PNV TYG LIDG  K G+V  A      
Sbjct: 262 VTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLAD 321

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M  K   PD +++N LI    ++  VD +  +L    A    + PD +T  +++     +
Sbjct: 322 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRR--AVSGGIKPDVVTYSSVIYGLCRS 379

Query: 248 GQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
            ++D   E  +++     +G P    +Y+  I+   + G  + A  +Y+ M   G   D 
Sbjct: 380 NRLD---EACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADV 436

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V  S LID    AG+V+ A  +L      G     ++Y+SL+    +  +  +A+EL E 
Sbjct: 437 VTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEE 496

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-----GLCPNTITYSILLVAC 419
           M+     P+  T N LI  +C  +++   + +L   K+      G   +TI YS L+   
Sbjct: 497 MERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGL 556

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +   V   L    +  ++GVIP+ + +  ++
Sbjct: 557 CKAGRVAEALDYFQEMIDNGVIPDHITYSILL 588



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 203/458 (44%), Gaps = 48/458 (10%)

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
           + D   Y  L+    + G++D     F EM +  + PNV     LIDG  KA +   A  
Sbjct: 6   QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            +  M+   +  D V++ AL++   +   +D+A  +L EM    H  +P+ +T  +L+  
Sbjct: 66  CFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRD--HGCEPNVVTYNSLIDG 123

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKK--- 298
                + DRA+E+++  H  +++ +P +  Y   ++   +TG  E A +++ +M  +   
Sbjct: 124 LCKNNEPDRAQELFE--HMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSH 181

Query: 299 ----GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
                  P+ +  S LID    A +V  A E+L+  K +G S  +I+Y+ L+        
Sbjct: 182 DMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESK 241

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
              A E+   M      P + T N+L+  LC   ++   + ++ DM   G  PN +TY  
Sbjct: 242 VAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGT 301

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 473
           L+    +   V+    +L+   + G  P+L+++  +I G+C     KA  ++E       
Sbjct: 302 LIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLC-----KADQVDE------- 349

Query: 474 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL---VENLGV 530
                     S+AL+  R A+  G  P V   S V+  L      D   RL   V++ G 
Sbjct: 350 ----------SIALL--RRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGC 397

Query: 531 SADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFG 565
             D +  S   +LIDG    G+ D  AF L E  A  G
Sbjct: 398 PPDVILYS---TLIDGLCKAGKVD-EAFDLYEVMAGDG 431



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 109/448 (24%), Positives = 198/448 (44%), Gaps = 20/448 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAFRFFKLVP-NPT 91
           L ++ R+ + + +L +M   G       Y++    +CK+ +    +E F   K V  +P+
Sbjct: 89  LWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPS 148

Query: 92  LSTFNMLMSVCASSKDSEGA---FQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVD 144
           + T+N L+     +   E A   FQ +   +   +   C      Y+ LI    K+ +V 
Sbjct: 149 MVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVS 208

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              E+   M   G  P+V TY  L+DG  K  +VA A+     M      P+ V +N+L+
Sbjct: 209 QAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLL 268

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKY 263
               ++  V  A  ++ +M        P+ +T G L+      G+V D    +  MI K 
Sbjct: 269 HGLCRARRVSDALALMRDMTC--RGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDK- 325

Query: 264 NIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              GTP+  +Y + IN   +    + + ++       G+ PD V  S++I     + +++
Sbjct: 326 --GGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLD 383

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +L   K++G    +I YS+L+     A    +A +LYE M        V T + LI
Sbjct: 384 EACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLI 443

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   ++ +   +L+ M  +G  P+T+TY+ L+      + ++  + L+ + +     
Sbjct: 444 DGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCA 503

Query: 442 PNLVMFKCII-GMCS-RRYEKARTLNEH 467
           P+ V +  +I GMC   R + A  L E 
Sbjct: 504 PSAVTYNILIHGMCRMERVDSAVVLLEQ 531



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 114/276 (41%), Gaps = 11/276 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L +  ++ E I LL      G+      Y +  + +C+S + + EA R    V +   
Sbjct: 339 NGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNR-LDEACRLLLYVKSRGC 397

Query: 90  -PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P +  ++ L+  +C + K  E AF +  ++   G  AD   Y+TLI    K+G+VD   
Sbjct: 398 PPDVILYSTLIDGLCKAGKVDE-AFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAH 456

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +   MV  G  P+  TY +LI G      + +A      M   N  P  V +N LI   
Sbjct: 457 LLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGM 516

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            +   VD A  +L +  A          D I   +L+     AG+V  A + ++ +    
Sbjct: 517 CRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNG 576

Query: 265 IKGTPEVYTIAINCCSQTGDW-EFACSVYDDMTKKG 299
           +      Y+I +    ++ D  E    V D M + G
Sbjct: 577 VIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLG 612


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 198/437 (45%), Gaps = 13/437 (2%)

Query: 35  LIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN 89
           L R G + + + LL    R G    +L  + V  A       + +   +A R F+ +V N
Sbjct: 142 LSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRN 201

Query: 90  ---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P + T+N+++    S  D E     +R +++ G+  +   Y TLI    K  KV   
Sbjct: 202 GVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEA 261

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +   M   G+  N+ +Y ++I+G    G++++       MR K + PD V +N L+  
Sbjct: 262 MALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNG 321

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G + +   +L+EM  +   + P+ +T   L+     AG + RA E++  +    ++
Sbjct: 322 FCKEGNLHQGLVLLSEMVGK--GLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLR 379

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                YT  I+   Q G    A  V  +M   G  P  V  +AL+      G+V+ A  I
Sbjct: 380 PNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGI 439

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L+    +G+   ++SYS+++      +   KA ++ E M    + P   T ++LI  LC 
Sbjct: 440 LRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCL 499

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L +  ++  +M   GL P+ +TY+ L+ A     ++   L L  +  + G +P+ V 
Sbjct: 500 QQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVT 559

Query: 447 FKCIIGMCSRRYEKART 463
           +  +I   ++   KART
Sbjct: 560 YSVLINGLNK---KART 573



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 193/422 (45%), Gaps = 28/422 (6%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  L SYN +I     +GR+SE  +L+E+M  KGL+  +  Y+      CK     +  
Sbjct: 273 VAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGL 332

Query: 81  FRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               ++V    +P + T+  L++    + +   A ++   ++  GL+ + + YTTLI   
Sbjct: 333 VLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGF 392

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            + G ++  ++V  EM+ +G  P+V TY AL+ G    G+V +A G    M  + + PD 
Sbjct: 393 CQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDV 452

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V ++ +I    +   + +AF +  EM  +   V PD +T  +L++      ++  A +++
Sbjct: 453 VSYSTVIAGFCRERELGKAFQMKEEMVEK--GVLPDTVTYSSLIQGLCLQQKLVEAFDLF 510

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + + +  +      YT  IN     G+   A  ++D+M ++G +PD V  S LI+     
Sbjct: 511 REMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKK 570

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE----------------- 360
            + + A  +L +   +      ++Y++L+  CSN  N  K++E                 
Sbjct: 571 ARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSN--NEFKSVEGLVKGFCMKGLMNEADR 628

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           +++ M     KP  +  N +I     G  + K   +  +++      +T+    L+ A  
Sbjct: 629 VFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALA 688

Query: 421 RK 422
           R+
Sbjct: 689 RE 690



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 184/456 (40%), Gaps = 50/456 (10%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-----VAKAFG 183
           ++  ++ + ++ G V     + H     G  P V +Y A++D   +           A  
Sbjct: 134 VFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAER 193

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            +  M    V P+   +N +I      G +++    + +M  E   + P+ +T   L+ A
Sbjct: 194 VFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKE--GISPNVVTYNTLIDA 251

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
                +V  A  + + +    +      Y   IN     G       + ++M  KG++PD
Sbjct: 252 SCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPD 311

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
           EV  + L++     G +     +L E   +G+S  +++Y++L+     A N  +A+E+++
Sbjct: 312 EVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFD 371

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M+   L+P   T   LI   C    + +  +VLS+M   G  P+ +TY+ L+       
Sbjct: 372 QMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLG 431

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 483
            V+  + +L    E G+ P++V +  +I    R  E  +                     
Sbjct: 432 RVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGK--------------------- 470

Query: 484 SLALMVYREAIVAGTIP-TVEVVSKVLG-CLQLPYNADIRERLVENLGVSADALKRS--- 538
             A  +  E +  G +P TV   S + G CLQ        ++LVE   +  + ++R    
Sbjct: 471 --AFQMKEEMVEKGVLPDTVTYSSLIQGLCLQ--------QKLVEAFDLFREMMRRGLPP 520

Query: 539 ---NLCSLIDGF---GEYDPRAFSLLEEAASFGIVP 568
                 SLI+ +   GE   +A  L +E    G +P
Sbjct: 521 DEVTYTSLINAYCVDGELS-KALRLHDEMVQRGFLP 555



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 147/361 (40%), Gaps = 59/361 (16%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +Y  LI    + G +S  +++ + M  +GL   ++ Y       C+ +  + EA
Sbjct: 343 LSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQ-KGLMNEA 401

Query: 81  FRFFKLVP----NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           ++    +     +P++ T+N L+   C   +  E A  +LR + E GL  D   Y+T+I 
Sbjct: 402 YKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQE-AVGILRGMVERGLPPDVVSYSTVIA 460

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              +  ++   F++  EMV  G+ P+  TY +LI G     ++ +AF  +  M  + + P
Sbjct: 461 GFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPP 520

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD------------------------ 231
           D V + +LI A    G + +A  +  EM       D                        
Sbjct: 521 DEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLL 580

Query: 232 ---------PDHITIGALMKACAN---------------AGQVDRAREVYKMIHKYNIKG 267
                    PD +T   L++ C+N                G ++ A  V+K + + N K 
Sbjct: 581 LKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKP 640

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
              +Y + I+  S+ G+   A ++Y ++         V + AL+      G  +    +L
Sbjct: 641 NAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLL 700

Query: 328 Q 328
           Q
Sbjct: 701 Q 701



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 113/274 (41%), Gaps = 23/274 (8%)

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGA-----CSNAKNWQKALELYEHMKSIKLKP 372
           G V  A  +L  A   G +  ++SY++++ A      SN +++  A  ++  M    + P
Sbjct: 146 GFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSP 205

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V T N +I  +     L K +  +  M+  G+ PN +TY+ L+ A  +K  V+  + LL
Sbjct: 206 NVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALL 265

Query: 433 SQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSL----- 485
                 GV  NL+ +  +I G+C + R  +   L E +     G    E  + +L     
Sbjct: 266 RAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRG--KGLVPDEVTYNTLVNGFC 323

Query: 486 -------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRS 538
                   L++  E +  G  P V   + ++ C+    N      + + + V        
Sbjct: 324 KEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNER 383

Query: 539 NLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCV 570
              +LIDGF +      A+ +L E    G  P V
Sbjct: 384 TYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSV 417



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 132/334 (39%), Gaps = 67/334 (20%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN L+      GR+ E + +L  M  +GL      Y       C+ ++ + +AF+  + 
Sbjct: 419 TYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCR-ERELGKAFQMKEE 477

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                ++P+ T++  +++  +C   K  E AF + R +   GL  D   YT+LI      
Sbjct: 478 MVEKGVLPD-TVTYSSLIQGLCLQQKLVE-AFDLFREMMRRGLPPDEVTYTSLINAYCVD 535

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------------------- 177
           G++     +  EMV  G  P+  TY  LI+G  K  +                       
Sbjct: 536 GELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYEESVPDDVTY 595

Query: 178 -----------------VAKAFGAYGIMR----------SKNVKPDRVVFNALITACGQS 210
                            + K F   G+M            +N KP+  ++N +I    + 
Sbjct: 596 NTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRG 655

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           G V +A+++  E+    H     H + + AL+KA A  G  D    + + I +       
Sbjct: 656 GNVHKAYNLYMELE---HSSFACHTVAVIALVKALAREGMNDELSRLLQNILRSCRLNDA 712

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
           +V  + +    + G+ +   +V  +M K G++PD
Sbjct: 713 KVAKVLVEVNFKEGNMDAVLNVLTEMAKDGLLPD 746


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 124/509 (24%), Positives = 224/509 (44%), Gaps = 34/509 (6%)

Query: 29  LHSYNRLI----RQGRISECI-DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           L +YN +I    ++GR  E I +L E+M+ +G+   +  Y+      C S    +EA   
Sbjct: 152 LVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAI-TACASGSLCEEATEL 210

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F  + +    P   T+N L+ V   +     A  VL+ ++ AG   +   Y  L++   +
Sbjct: 211 FTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGR 270

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +G  +A  E+   MV+ GIEP+V TY +L+   ++AG+V +A   Y  MR+ N  P+   
Sbjct: 271 AGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFT 330

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           FNALI   G++        +  +M A    V+PD +T  +L+ A    G      +V++ 
Sbjct: 331 FNALIGMHGKNKNFSEMMVIFEDMQA--CGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRG 388

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + K   +     + I I    + G  + A S+YD M + G  PD    + L+      G+
Sbjct: 389 MKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGR 448

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
            E A  IL E          I+Y+S++ A +N    +K  E+ + + +I +  T   +  
Sbjct: 449 WEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKT 508

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
            +        + +  +    M+  G   +T T++ ++    +K  ++      +  +  G
Sbjct: 509 FVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTG 568

Query: 440 VIPNLVMFKCIIGMCSRR--YEKAR-TLNE--------HVLSFN------SGRPQIENKW 482
           + P++V + C++GM  R   Y K   TL E         ++S+N      S   Q+    
Sbjct: 569 LEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQL---- 624

Query: 483 TSLALMVYREAIVAGTIPTVEVVSKVLGC 511
            S A  ++ E +  G  P     +  +GC
Sbjct: 625 -SSATRIFHEMVSNGIQPDSFTYNTFVGC 652



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 190/443 (42%), Gaps = 44/443 (9%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           SE L     L R+G+ ++ +++   M +      D V  A    +   +  +    R FK
Sbjct: 47  SELLSIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVSRLFK 106

Query: 86  LVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +        +  +  L+S  + ++  + A      ++EAG +     Y  +I    K G
Sbjct: 107 SLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKG 166

Query: 142 KV-DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           +  + + E+F EM   GI+P+ +TY   I  CA      +A   +  M+S N  PDRV +
Sbjct: 167 RSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTY 226

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           NAL+   G++G  + A +VL EM  E     P+ +T   L+ A   AG  + A E+    
Sbjct: 227 NALLDVYGKAGWYNEAANVLKEM--ESAGCLPNIVTYNELLSAFGRAGLCNAAAEMK--- 281

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                                           D M  KG+ PD    ++L+     AGKV
Sbjct: 282 --------------------------------DSMVSKGIEPDVFTYTSLLSAYSRAGKV 309

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E A EI  + +    +    ++++L+G     KN+ + + ++E M++  ++P + T N+L
Sbjct: 310 EQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSL 369

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           + A        + ++V   MK  G  P+  T++IL+ A  R    +  L +     + G 
Sbjct: 370 LGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGC 429

Query: 441 IPNLVMFKCIIGMCSR--RYEKA 461
            P+L  F  ++   +R  R+E A
Sbjct: 430 TPDLATFNTLLAALAREGRWEHA 452



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/434 (20%), Positives = 175/434 (40%), Gaps = 52/434 (11%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G  +   ++ + M  KG+ + D   +    +       +++A   +  
Sbjct: 260 TYNELLSAFGRAGLCNAAAEMKDSMVSKGI-EPDVFTYTSLLSAYSRAGKVEQAMEIYNQ 318

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   TFN L+ +   +K+      +   +Q  G++ D   + +L+    K+G 
Sbjct: 319 MRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGM 378

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
              + +VF  M  AG EP+  T+  LI+   + G   +A   Y  M      PD   FN 
Sbjct: 379 YSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNT 438

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L+ A  + G  + A  +L E+N   +   P+ I   +++ A AN G++++ +E+   +H 
Sbjct: 439 LLAALAREGRWEHAELILDELNRSSY--KPNDIAYASMLHAYANGGELEKLKEMVDTLHT 496

Query: 263 YNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
             +  T    + + +  + CS   + E A   +  M   G + D    +A+I   G  G 
Sbjct: 497 IYVPFTKILLKTFVLVYSKCSLVDEAEDA---FLAMRHHGYLSDTSTFNAMISMYGKKGM 553

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---------------------- 357
           ++ A +     ++ G+   +++Y+ LMG       ++K                      
Sbjct: 554 MDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNT 613

Query: 358 -------------ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
                        A  ++  M S  ++P   T N  +    +G   P+ + V+  M   G
Sbjct: 614 VIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTG 673

Query: 405 LCPNTITYSILLVA 418
             P+ +TY  L+ A
Sbjct: 674 CKPDEVTYRTLVDA 687



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/380 (20%), Positives = 149/380 (39%), Gaps = 11/380 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI    +    SE + + EDM+  G+ + D V                E  + F+ 
Sbjct: 330 TFNALIGMHGKNKNFSEMMVIFEDMQACGV-EPDIVTWNSLLGAFGKNGMYSEVLKVFRG 388

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P  +TFN+L+        S+ A  +   + +AG   D   + TL+   A+ G+
Sbjct: 389 MKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALAREGR 448

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            +    +  E+  +  +PN   Y +++   A  G++ K       + +  V   +++   
Sbjct: 449 WEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKT 508

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
            +    +   VD A D    M    H    D  T  A++      G +D+A + + ++  
Sbjct: 509 FVLVYSKCSLVDEAEDAFLAMRH--HGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRS 566

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             ++     Y   +    + G +    +   +    G  PD V  + +I      G++ +
Sbjct: 567 TGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSYSKHGQLSS 626

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  I  E  + GI     +Y++ +G   N   + +AL + +HM     KP   T   L+ 
Sbjct: 627 ATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYRTLVD 686

Query: 383 ALCDGDQLPKTMEVLSDMKS 402
           A C   +  +   +L  +KS
Sbjct: 687 AYCKIGKFEEVERILKFIKS 706


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 183/400 (45%), Gaps = 43/400 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ T+++LM      +D+E    +L  ++  G++ +   YT  I    ++G+++  + +
Sbjct: 204 PTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRI 263

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M   G +P+V T   LI     AG++A A   +  M++ + KPDRV +  L+  CG 
Sbjct: 264 LRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGD 323

Query: 210 SG-----------------------------------AVDRAFDVLAEMNAEVHPVDPDH 234
           SG                                    VD A DV  EM  +   + P  
Sbjct: 324 SGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQK--GIIPQQ 381

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSV 291
            +  +L+     A + +RA E++  +   NI G TP  YT  + IN   ++G+   A   
Sbjct: 382 YSYNSLISGFLKADRFNRALELFNHM---NIHGPTPNGYTHVLFINYHGKSGESLKALKR 438

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           Y+ M  KG++PD V  +A++      G++  A  +  E K  GIS   I+Y+ ++  CS 
Sbjct: 439 YELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSK 498

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A N  +A++++  M   +  P V  MN+LI  L    +  +  ++  ++K + L P   T
Sbjct: 499 ASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCT 558

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           Y+ LL    R+  V+  + LL     +   PN++ +  ++
Sbjct: 559 YNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVL 598



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 184/424 (43%), Gaps = 11/424 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CKSQKA 76
           A  V   ++SY   IR     GR+ E   +L  ME +G    D V +     + C + + 
Sbjct: 234 ARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGC-KPDVVTNTVLIQILCDAGRL 292

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
                 F+K+  +   P   T+  L+  C  S DS    ++   ++  G   +   YT  
Sbjct: 293 ADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAA 352

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    + G+VD   +VF EM   GI P  ++Y +LI G  KA +  +A   +  M     
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+       I   G+SG   +A      M ++   + PD +   A++   A  G++  A
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSK--GIVPDVVAGNAVLYGLAKTGRLGMA 470

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           + V+  +    I      YT+ I CCS+  + + A  ++ +M +    PD + +++LID 
Sbjct: 471 KRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDM 530

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+   A++I  E K   +     +Y++L+         ++ ++L E M S    P 
Sbjct: 531 LYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPN 590

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + T N ++  LC   ++   +++L  M   G  P+  +Y+ ++    ++  ++    +  
Sbjct: 591 IITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFC 650

Query: 434 QAKE 437
           Q K+
Sbjct: 651 QMKK 654



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 140/311 (45%), Gaps = 2/311 (0%)

Query: 106  KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
            K++  A ++++  +  G+      Y  LI        +D   E+F EM   G +P+  TY
Sbjct: 745  KEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTY 804

Query: 166  GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
              ++D   K+ ++         M +K  K   V +N +I+   +S  +D A ++  ++ +
Sbjct: 805  HLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMS 864

Query: 226  EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
            E     P   T G L+      G ++ A  ++  + +   +    +Y I +N     GD 
Sbjct: 865  E--GFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDT 922

Query: 286  EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
            E  C +++ M ++G+ PD    + +ID     G++       ++  + G+   +I+Y+ L
Sbjct: 923  EKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLL 982

Query: 346  MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
            +     +   ++AL LY  M+   + P + T N+LI  L    +  +  ++  ++ + G 
Sbjct: 983  IHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGW 1042

Query: 406  CPNTITYSILL 416
             PN  TY+ L+
Sbjct: 1043 KPNVFTYNALI 1053



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 101/480 (21%), Positives = 194/480 (40%), Gaps = 54/480 (11%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           K   Y  +V     + + L + GR+ E +D+ ++M++KG++     Y++      K+ + 
Sbjct: 338 KADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADR- 396

Query: 77  IKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
              A   F  +    P P   T  + ++    S +S  A +   L++  G+  D      
Sbjct: 397 FNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNA 456

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           ++   AK+G++     VFHE+   GI P+  TY  +I  C+KA    +A   +  M    
Sbjct: 457 VLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENR 516

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDV---LAEMNAEVHPVDPDHITIGALMKACANAGQ 249
             PD +  N+LI    ++G  + A+ +   L EMN E     P   T   L+      G+
Sbjct: 517 CAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLE-----PTDCTYNTLLAGLGREGK 571

Query: 250 VDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           V   +EV +++   N    P     Y   ++C  + G+  +A  +   MT  G +PD   
Sbjct: 572 V---KEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSS 628

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKN--------------QGISVGII------------ 340
            + ++      G+++ AF +  + K                 +  G++            
Sbjct: 629 YNTVMYGLVKEGRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMKEALHTVREYIL 688

Query: 341 ---------SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
                    S  SLM         +K++E  E++ S  L      ++ +I   C   +  
Sbjct: 689 QPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEAL 748

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              E++   ++LG+   T +Y+ L+     +D +++   L S+ K  G  P+   +  I+
Sbjct: 749 AAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLIL 808



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 134/288 (46%), Gaps = 2/288 (0%)

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            +P   T+++++     S   E   ++   +   G K+    Y T+I+   KS  +D    
Sbjct: 798  DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAIN 857

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            +++++++ G  P   TYG L+DG  K G +  A   +  M     +P+  ++N L+    
Sbjct: 858  LYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYR 917

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             +G  ++  ++   M  +   ++PD  +   ++      G+++     +K +    ++  
Sbjct: 918  IAGDTEKVCELFESMVEQ--GMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPD 975

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
               Y + I+   ++G  E A S+Y+DM KKG+ P+    ++LI + G AGK   A ++ +
Sbjct: 976  LITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYE 1035

Query: 329  EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            E   +G    + +Y++L+   S + + + A   Y  M     +P  ST
Sbjct: 1036 ELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSST 1083



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/438 (20%), Positives = 179/438 (40%), Gaps = 25/438 (5%)

Query: 29   LHSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIK 78
            L SYN     L+++GR+ E   +           M KV    +  VC           +K
Sbjct: 626  LSSYNTVMYGLVKEGRLDEAFWMF--------CQMKKVLAPDYATVCTILPSFVRSGLMK 677

Query: 79   EAF---RFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EA    R + L P+  +  S+ + LM        +E + +    +  +GL  D    + +
Sbjct: 678  EALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPI 737

Query: 134  ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
            I    K  +  A  E+  +  N G+     +Y ALI G      +  A   +  M+    
Sbjct: 738  IRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGC 797

Query: 194  KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
             PD   ++ ++ A G+S  ++    +  EM+ + +     ++T   ++     +  +D A
Sbjct: 798  DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGY--KSTYVTYNTIISGLVKSKMLDEA 855

Query: 254  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
              +Y  +       TP  Y   ++   + G+ E A +++D+M + G  P+    + L++ 
Sbjct: 856  INLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNG 915

Query: 314  AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               AG  E   E+ +    QG++  I SY+ ++            L  ++ +  + L+P 
Sbjct: 916  YRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPD 975

Query: 374  VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
            + T N LI  L    +L + + + +DM+  G+ PN  TY+ L++   +         +  
Sbjct: 976  LITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYE 1035

Query: 434  QAKEDGVIPNLVMFKCII 451
            +    G  PN+  +  +I
Sbjct: 1036 ELLAKGWKPNVFTYNALI 1053



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/417 (19%), Positives = 183/417 (43%), Gaps = 17/417 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L + GR+     +  +++  G+   D + +      C       EA + F +++ N   P
Sbjct: 461 LAKTGRLGMAKRVFHELKAMGI-SPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAP 519

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-ADCKLYTTLITTCAKSGKVDAMFEV 149
            +   N L+ +   +     A+++   ++E  L+  DC  Y TL+    + GKV  + ++
Sbjct: 520 DVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCT-YNTLLAGLGREGKVKEVMQL 578

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M +    PN+ TY  ++D   K G+V  A      M      PD   +N ++    +
Sbjct: 579 LEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVK 638

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D AF +  +M   +    PD+ T+  ++ +   +G +   +E    + +Y ++   
Sbjct: 639 EGRLDEAFWMFCQMKKVLA---PDYATVCTILPSFVRSGLM---KEALHTVREYILQPDS 692

Query: 270 EVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           +V   +++   +        E +    +++   G++ D++FLS +I       +  AA E
Sbjct: 693 KVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHFCKHKEALAAHE 752

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           ++++ +N G+S+   SY++L+    +      A EL+  MK +   P   T + ++ A+ 
Sbjct: 753 LVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMG 812

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
              ++   +++  +M + G     +TY+ ++    +   ++  + L  Q   +G  P
Sbjct: 813 KSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSP 869



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 112/536 (20%), Positives = 205/536 (38%), Gaps = 78/536 (14%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            +YN L+    R+G++ E + LLE M           Y+     +CK+ +        + +
Sbjct: 558  TYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSM 617

Query: 87   VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
              N   P LS++N +M         + AF +   +++  L  D     T++ +  +SG  
Sbjct: 618  TMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQMKKV-LAPDYATVCTILPSFVRSG-- 674

Query: 144  DAMFEVFHEMVNAGIEPN-------VHTYGALI---DGCAKAGQVAKAFGAYGIM----- 188
              M E  H +    ++P+       VH+    I   DG  K+ + A+   + G++     
Sbjct: 675  -LMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLF 733

Query: 189  ------------------------RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
                                     +  V      +NALI        +D A ++ +EM 
Sbjct: 734  LSPIIRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMK 793

Query: 225  AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
                  DPD  T   ++ A   + +++   ++ + +H    K T   Y   I+   ++  
Sbjct: 794  R--LGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKM 851

Query: 285  WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
             + A ++Y  +  +G  P       L+D     G +E A  +  E    G       Y+ 
Sbjct: 852  LDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNI 911

Query: 345  LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
            L+     A + +K  EL+E M    + P + +   +I  LC   +L   +     +  +G
Sbjct: 912  LLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMG 971

Query: 405  LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---------GMCS 455
            L P+ ITY++L+    +   +E  L L +  ++ G+ PNL  +  +I             
Sbjct: 972  LEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAG 1031

Query: 456  RRYEK--ARTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAGTIPT 501
            + YE+  A+    +V ++N        SG P  EN     A   Y   IV G  P 
Sbjct: 1032 KMYEELLAKGWKPNVFTYNALIRGYSVSGSP--EN-----AFAAYGRMIVGGCRPN 1080



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 159/394 (40%), Gaps = 17/394 (4%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQ----VLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           P    +  +ML S  A++ D E A +    V R  +       C     L+    + G V
Sbjct: 63  PGDAGNVVHMLRS--AAAADPEEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVGDV 120

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
             +F++    +   I+ NV T+  +       G +  A  A  +M+   +  +   +N L
Sbjct: 121 AQVFDLMQRQI---IKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGL 177

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    +SG    A DV   M A+   V P   T   LM A    G+   A  V  ++ + 
Sbjct: 178 IYFLVKSGFDREAMDVYKAMAAD--GVVPTVRTYSVLMLAF---GKRRDAETVVGLLGEM 232

Query: 264 NIKGT-PEVY--TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             +G  P VY  TI I    Q G  E A  +   M ++G  PD V  + LI     AG++
Sbjct: 233 EARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRL 292

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A ++  + K        ++Y +L+  C ++ + +   E++  +K+      V +  A 
Sbjct: 293 ADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAA 352

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           + ALC   ++ + ++V  +MK  G+ P   +Y+ L+    + D     L L +     G 
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412

Query: 441 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
            PN       I    +  E  + L  + L  + G
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSKG 446



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 9/180 (5%)

Query: 32   YNRLIRQGRIS----ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
            YN L+   RI+    +  +L E M  +G+    K Y      +C   + + +   +FK +
Sbjct: 909  YNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGR-LNDGLSYFKQL 967

Query: 88   PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             +    P L T+N+L+     S   E A  +   +++ G+  +   Y +LI    K+GK 
Sbjct: 968  TDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKA 1027

Query: 144  DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                +++ E++  G +PNV TY ALI G + +G    AF AYG M     +P+   +  L
Sbjct: 1028 AEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 168/362 (46%), Gaps = 37/362 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + ++N ++   +S  + EGA ++L  ++  G++ D   Y +LI+   K G+++    +
Sbjct: 206 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 265

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF---------------GAYGI------- 187
           F +MV  G+ PN  TY  LIDG    G + +AF                 Y +       
Sbjct: 266 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFM 325

Query: 188 -------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
                        MR K + PD + +N LI    + G   RAFD+  EM ++   ++P H
Sbjct: 326 EGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSK--GIEPTH 383

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T  +L+   +   ++  A ++++ I    +     ++   I+     G+ E A  +  +
Sbjct: 384 VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKE 443

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M +K V PDEV  + L+      GKVE A  +L E K +GI    ISY++L+       +
Sbjct: 444 MDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGD 503

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            + A  + + M SI   PT+ T NALI  LC   +     E+L +M + G+ P+  TY  
Sbjct: 504 IKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLS 563

Query: 415 LL 416
           L+
Sbjct: 564 LI 565



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 206/471 (43%), Gaps = 53/471 (11%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAK------------SGKVDAMFEVFHEMVNAGI 158
           A Q+L+ V E  +  + +L+  L  +  +             GK+    E    M   G 
Sbjct: 145 ALQLLKQVMETRIATNRELFDELTLSRDRLSVKSSIVFDLLEGKLKKAREFIGFMEGLGF 204

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA-- 216
           +PNV +Y  +I G +  G +  A      MR K ++PD   + +LI+   + G ++ A  
Sbjct: 205 KPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASG 264

Query: 217 -FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
            FD + E+      + P+ +T   L+    N G ++RA      + K  I  +   Y + 
Sbjct: 265 LFDKMVEIG-----LVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLL 319

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           ++     G    A  +  +M KKG+IPD +  + LI+     G  + AF++  E  ++GI
Sbjct: 320 VHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGI 379

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
               ++Y+SL+   S     ++A +L+E +    + P V   NA+I   C    + +   
Sbjct: 380 EPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFM 439

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           +L +M    + P+ +T++ L+    R+  VE   MLL + K  G+ P+ + +  +I    
Sbjct: 440 LLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYG 499

Query: 456 RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLP 515
           RR +                  I++     A  V  E +  G  PT+   + ++ CL   
Sbjct: 500 RRGD------------------IKD-----AFXVRDEMLSIGFNPTLLTYNALIKCLCKN 536

Query: 516 YNADIRERLVE---NLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 563
              D+ E L++   N G+S D    S   SLI+G G  D    +L+E+ AS
Sbjct: 537 QEGDLAEELLKEMVNKGISPDD---STYLSLIEGMGNVD----TLVEDNAS 580



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/290 (23%), Positives = 129/290 (44%), Gaps = 38/290 (13%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+     +GR+ E  D++++M +KG++                             
Sbjct: 315 TYNLLVHALFMEGRMGEADDMIKEMRKKGII----------------------------- 345

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P   T+N+L++  +   +++ AF +   +   G++     YT+LI   ++  ++   
Sbjct: 346 ---PDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEA 402

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++F ++++ G+ P+V  + A+IDG    G V +AF     M  K+V PD V FN L+  
Sbjct: 403 DDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 462

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G V+ A  +L EM  +   + PDHI+   L+      G +  A  V   +      
Sbjct: 463 RCREGKVEEARMLLDEM--KXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFN 520

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            T   Y   I C  +  + + A  +  +M  KG+ PD+    +LI+  G+
Sbjct: 521 PTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGN 570


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 183/400 (45%), Gaps = 43/400 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ T+++LM      +D+E    +L  ++  G++ +   YT  I    ++G+++  + +
Sbjct: 204 PTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRI 263

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M   G +P+V T   LI     AG++A A   +  M++ + KPDRV +  L+  CG 
Sbjct: 264 LRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGD 323

Query: 210 SG-----------------------------------AVDRAFDVLAEMNAEVHPVDPDH 234
           SG                                    VD A DV  EM  +   + P  
Sbjct: 324 SGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQK--GIIPQQ 381

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSV 291
            +  +L+     A + +RA E++  +   NI G TP  YT  + IN   ++G+   A   
Sbjct: 382 YSYNSLISGFLKADRFNRALELFNHM---NIHGPTPNGYTHVLFINYHGKSGESLKALKR 438

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           Y+ M  KG++PD V  +A++      G++  A  +  E K  GIS   I+Y+ ++  CS 
Sbjct: 439 YELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSK 498

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A N  +A++++  M   +  P V  MN+LI  L    +  +  ++  ++K + L P   T
Sbjct: 499 ASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCT 558

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           Y+ LL    R+  V+  + LL     +   PN++ +  ++
Sbjct: 559 YNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVL 598



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 185/424 (43%), Gaps = 11/424 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CKSQKA 76
           A  V   ++SY   IR     GR+ E   +L  ME +G    D V +     + C + + 
Sbjct: 234 ARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGC-KPDVVTNTVLIQILCDAGRL 292

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
                 F+K+  +   P   T+  L+  C  S DS    ++   ++  G   +   YT  
Sbjct: 293 ADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAA 352

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    + G+VD   +VF EM   GI P  ++Y +LI G  KA +  +A   +  M     
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+       I   G+SG   +A      M ++   + PD +   A++   A  G++  A
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSK--GIVPDVVAGNAVLYGLAKTGRLGMA 470

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           + V+  +    I      YT+ I CCS+  + + A  ++ +M +    PD + +++LID 
Sbjct: 471 KRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDM 530

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+   A++I  E K   +     +Y++L+         ++ ++L E M S    P 
Sbjct: 531 LYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPN 590

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + T N ++  LC   ++   +++L  M   G  P+  +Y+ ++    ++D ++    +  
Sbjct: 591 IITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFC 650

Query: 434 QAKE 437
           Q K+
Sbjct: 651 QMKK 654



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 140/311 (45%), Gaps = 2/311 (0%)

Query: 106  KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
            K++  A ++++  +  G+      Y  LI        +D   E+F EM   G +P+  TY
Sbjct: 745  KEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTY 804

Query: 166  GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
              ++D   K+ ++         M +K  K   V +N +I+   +S  +D A ++  ++ +
Sbjct: 805  HLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMS 864

Query: 226  EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
            E     P   T G L+      G ++ A  ++  + +   +    +Y I +N     GD 
Sbjct: 865  E--GFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDT 922

Query: 286  EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
            E  C +++ M ++G+ PD    + +ID     G++       ++  + G+   +I+Y+ L
Sbjct: 923  EKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLL 982

Query: 346  MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
            +     +   ++AL LY  M+   + P + T N+LI  L    +  +  ++  ++ + G 
Sbjct: 983  IHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGW 1042

Query: 406  CPNTITYSILL 416
             PN  TY+ L+
Sbjct: 1043 KPNVFTYNALI 1053



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 106/480 (22%), Positives = 196/480 (40%), Gaps = 54/480 (11%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           K   Y  +V     + + L + GR+ E +D+ ++M++KG++     Y++      K+ + 
Sbjct: 338 KADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADR- 396

Query: 77  IKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
              A   F  +    P P   T  + ++    S +S  A +   L++  G+  D      
Sbjct: 397 FNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNA 456

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           ++   AK+G++     VFHE+   GI P+  TY  +I  C+KA    +A   +  M    
Sbjct: 457 VLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENR 516

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDV---LAEMNAEVHPVDPDHITIGALMKACANAGQ 249
             PD +  N+LI    ++G  + A+ +   L EMN E     P   T   L+      G+
Sbjct: 517 CAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLE-----PTDCTYNTLLAGLGREGK 571

Query: 250 VDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--- 303
           V   +EV +++   N    P     Y   ++C  + G+  +A  +   MT  G +PD   
Sbjct: 572 V---KEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSS 628

Query: 304 -EVFLSALI---------------------DFAG---------HAGKVEAAFEILQEAKN 332
               +  L+                     D+A           +G ++ A   ++E   
Sbjct: 629 YNTVMYGLVKEDRLDEAFWMFCQMKKVLAPDYATVCTILPSFVRSGLMKEALHTVREYIL 688

Query: 333 QGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           Q  S V   S  SLM         +K++E  E++ S  L      ++ +I  LC   +  
Sbjct: 689 QPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEAL 748

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              E++   ++LG+   T +Y+ L+     +D +++   L S+ K  G  P+   +  I+
Sbjct: 749 AAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLIL 808



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 134/288 (46%), Gaps = 2/288 (0%)

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            +P   T+++++     S   E   ++   +   G K+    Y T+I+   KS  +D    
Sbjct: 798  DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAIN 857

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            +++++++ G  P   TYG L+DG  K G +  A   +  M     +P+  ++N L+    
Sbjct: 858  LYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYR 917

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             +G  ++  ++   M  +   ++PD  +   ++      G+++     +K +    ++  
Sbjct: 918  IAGDTEKVCELFESMVEQ--GMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPD 975

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
               Y + I+   ++G  E A S+Y+DM KKG+ P+    ++LI + G AGK   A ++ +
Sbjct: 976  LITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYE 1035

Query: 329  EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            E   +G    + +Y++L+   S + + + A   Y  M     +P  ST
Sbjct: 1036 ELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSST 1083



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/438 (20%), Positives = 178/438 (40%), Gaps = 25/438 (5%)

Query: 29   LHSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIK 78
            L SYN     L+++ R+ E   +           M KV    +  VC           +K
Sbjct: 626  LSSYNTVMYGLVKEDRLDEAFWMF--------CQMKKVLAPDYATVCTILPSFVRSGLMK 677

Query: 79   EAF---RFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EA    R + L P+  +  S+ + LM        +E + +    +  +GL  D    + +
Sbjct: 678  EALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPI 737

Query: 134  ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
            I    K  +  A  E+  +  N G+     +Y ALI G      +  A   +  M+    
Sbjct: 738  IRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGC 797

Query: 194  KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
             PD   ++ ++ A G+S  ++    +  EM+ + +     ++T   ++     +  +D A
Sbjct: 798  DPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGY--KSTYVTYNTIISGLVKSKMLDEA 855

Query: 254  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
              +Y  +       TP  Y   ++   + G+ E A +++D+M + G  P+    + L++ 
Sbjct: 856  INLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNG 915

Query: 314  AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               AG  E   E+ +    QG++  I SY+ ++            L  ++ +  + L+P 
Sbjct: 916  YRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPD 975

Query: 374  VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
            + T N LI  L    +L + + + +DM+  G+ PN  TY+ L++   +         +  
Sbjct: 976  LITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYE 1035

Query: 434  QAKEDGVIPNLVMFKCII 451
            +    G  PN+  +  +I
Sbjct: 1036 ELLAKGWKPNVFTYNALI 1053



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/417 (19%), Positives = 182/417 (43%), Gaps = 17/417 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L + GR+     +  +++  G+   D + +      C       EA + F +++ N   P
Sbjct: 461 LAKTGRLGMAKRVFHELKAMGI-SPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAP 519

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-ADCKLYTTLITTCAKSGKVDAMFEV 149
            +   N L+ +   +     A+++   ++E  L+  DC  Y TL+    + GKV  + ++
Sbjct: 520 DVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCT-YNTLLAGLGREGKVKEVMQL 578

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M +    PN+ TY  ++D   K G+V  A      M      PD   +N ++    +
Sbjct: 579 LEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVK 638

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D AF +  +M   +    PD+ T+  ++ +   +G +   +E    + +Y ++   
Sbjct: 639 EDRLDEAFWMFCQMKKVLA---PDYATVCTILPSFVRSGLM---KEALHTVREYILQPDS 692

Query: 270 EVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           +V   +++   +        E +    +++   G++ D++FLS +I       +  AA E
Sbjct: 693 KVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALAAHE 752

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           ++++ +N G+S+   SY++L+    +      A EL+  MK +   P   T + ++ A+ 
Sbjct: 753 LVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMG 812

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
              ++   +++  +M + G     +TY+ ++    +   ++  + L  Q   +G  P
Sbjct: 813 KSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSP 869



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 112/536 (20%), Positives = 205/536 (38%), Gaps = 78/536 (14%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            +YN L+    R+G++ E + LLE M           Y+     +CK+ +        + +
Sbjct: 558  TYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSM 617

Query: 87   VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
              N   P LS++N +M         + AF +   +++  L  D     T++ +  +SG  
Sbjct: 618  TMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKV-LAPDYATVCTILPSFVRSG-- 674

Query: 144  DAMFEVFHEMVNAGIEPN-------VHTYGALI---DGCAKAGQVAKAFGAYGIM----- 188
              M E  H +    ++P+       VH+    I   DG  K+ + A+   + G++     
Sbjct: 675  -LMKEALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLF 733

Query: 189  ------------------------RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
                                     +  V      +NALI        +D A ++ +EM 
Sbjct: 734  LSPIIRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMK 793

Query: 225  AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
                  DPD  T   ++ A   + +++   ++ + +H    K T   Y   I+   ++  
Sbjct: 794  R--LGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKM 851

Query: 285  WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
             + A ++Y  +  +G  P       L+D     G +E A  +  E    G       Y+ 
Sbjct: 852  LDEAINLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNI 911

Query: 345  LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
            L+     A + +K  EL+E M    + P + +   +I  LC   +L   +     +  +G
Sbjct: 912  LLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMG 971

Query: 405  LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---------GMCS 455
            L P+ ITY++L+    +   +E  L L +  ++ G+ PNL  +  +I             
Sbjct: 972  LEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAG 1031

Query: 456  RRYEK--ARTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAGTIPT 501
            + YE+  A+    +V ++N        SG P  EN     A   Y   IV G  P 
Sbjct: 1032 KMYEELLAKGWKPNVFTYNALIRGYSVSGSP--EN-----AFAAYGRMIVGGCRPN 1080



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 159/394 (40%), Gaps = 17/394 (4%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQ----VLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           P    +  +ML S  A++ D E A +    V R  +       C     L+    + G V
Sbjct: 63  PGDAGNVVHMLRS--AAAADPEEALELFLSVARQPRVVHTTESCNYMLELMRAHGRVGDV 120

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
             +F++    +   I+ NV T+  +       G +  A  A  +M+   +  +   +N L
Sbjct: 121 AQVFDLMQRQI---IKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGL 177

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    +SG    A DV   M A+   V P   T   LM A    G+   A  V  ++ + 
Sbjct: 178 IYFLVKSGFDREAMDVYKAMAAD--GVVPTVRTYSVLMLAF---GKRRDAETVVGLLGEM 232

Query: 264 NIKGT-PEVY--TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             +G  P VY  TI I    Q G  E A  +   M ++G  PD V  + LI     AG++
Sbjct: 233 EARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRL 292

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A ++  + K        ++Y +L+  C ++ + +   E++  +K+      V +  A 
Sbjct: 293 ADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAA 352

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           + ALC   ++ + ++V  +MK  G+ P   +Y+ L+    + D     L L +     G 
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412

Query: 441 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
            PN       I    +  E  + L  + L  + G
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSKG 446



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 9/180 (5%)

Query: 32   YNRLIRQGRIS----ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
            YN L+   RI+    +  +L E M  +G+    K Y      +C   + + +   +FK +
Sbjct: 909  YNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGR-LNDGLSYFKQL 967

Query: 88   PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             +    P L T+N+L+     S   E A  +   +++ G+  +   Y +LI    K+GK 
Sbjct: 968  TDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKA 1027

Query: 144  DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                +++ E++  G +PNV TY ALI G + +G    AF AYG M     +P+   +  L
Sbjct: 1028 AEAGKMYEELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 197/430 (45%), Gaps = 13/430 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    R G+    I++++DM R  +      Y+    N C +    K+A    K +
Sbjct: 193 YNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYN-NVINACGAAGNWKKALELCKKM 251

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P L T N+++S   +      A     +++ A +  D      +I    K G+ 
Sbjct: 252 TRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVKDGQY 311

Query: 144 DAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
               E+ + M     +  P+V TY +++      G+V      + +M ++ VKP+ V +N
Sbjct: 312 GEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYN 371

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           AL+ A    G    A  +   +    + + PD ++   L+ A   +GQ ++ARE +K + 
Sbjct: 372 ALLGAYASRGMHADALGIFKLLKQ--NGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMR 429

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K + +     Y   I+     G ++ A S+  +M K G+ PD V +S L+   G   ++ 
Sbjct: 430 KNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQIT 489

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
               IL+ AK++GI + I+ Y+S +G+  N  ++ KALELY  M +  + P   T N LI
Sbjct: 490 KIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILI 549

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           + LC   +  ++++   DM  L +      YS L+ +  ++  +       S  KE G +
Sbjct: 550 SGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCL 609

Query: 442 PNLVMFKCII 451
           P+++ +  +I
Sbjct: 610 PDVLTYTAMI 619



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 165/376 (43%), Gaps = 6/376 (1%)

Query: 81  FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           FR+ K   N       + M++ + A     + A  +   +QE   K D  +Y +LI   A
Sbjct: 142 FRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAHA 201

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           ++G+      +  +M+ A I P+  TY  +I+ C  AG   KA      M    V PD V
Sbjct: 202 RAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDLV 261

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
             N +++A        +A      M      + PD  T+  ++      GQ   A E+  
Sbjct: 262 THNIVLSAFKNGSQYSKAIAYFEMMKGA--NIAPDTFTLNIVIHCLVKDGQYGEAIELLN 319

Query: 259 MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            + +   +  P+V  YT  ++     G  E   +V+D M  +GV P+ V  +AL+     
Sbjct: 320 SMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYAS 379

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G    A  I +  K  G+   ++SY++L+ A   +   +KA E ++ M+    +P + +
Sbjct: 380 RGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVS 439

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            NALI A        + + +L +M+  G+ P+ ++ S LL AC R   +     +L  AK
Sbjct: 440 YNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAK 499

Query: 437 EDGVIPNLVMFKCIIG 452
             G+  N+V +   IG
Sbjct: 500 SRGIKLNIVCYNSGIG 515



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 180/397 (45%), Gaps = 20/397 (5%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            F +L+     +   + A  V R ++ +    A   +Y  +I   A+  ++D    +F E
Sbjct: 121 NFPLLIREITFAGSLQHAVHVFRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGLFFE 180

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M     +P+   Y +LI   A+AGQ   A      M    + P R  +N +I ACG +G 
Sbjct: 181 MQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGN 240

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
             +A ++  +M    + V PD +T   ++ A  N  Q  +A   ++M+   NI   P+ +
Sbjct: 241 WKKALELCKKMTR--NGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANI--APDTF 296

Query: 273 T--IAINCCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           T  I I+C  + G +  A  + + M +K     PD V  ++++      GKVE    +  
Sbjct: 297 TLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFD 356

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G+   I+SY++L+GA ++      AL +++ +K   L+P V +   L+ A     
Sbjct: 357 MMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSG 416

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           Q  K  E   +M+     PN ++Y+ L+ A       +  + LL + ++DG+ P++V   
Sbjct: 417 QPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSIS 476

Query: 449 CIIGMCSR-----------RYEKARTLNEHVLSFNSG 474
            ++  C R              K+R +  +++ +NSG
Sbjct: 477 TLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSG 513



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 117/503 (23%), Positives = 202/503 (40%), Gaps = 89/503 (17%)

Query: 35  LIRQGRISECIDLLEDMERK------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           L++ G+  E I+LL  M  K       ++    + H+ +  VC   +  K  F       
Sbjct: 305 LVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYY--VCGKVEDCKAVFDMMVAEG 362

Query: 89  -NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + ++N L+   AS      A  + +L+++ GL+ D   YTTL+    +SG+ +   
Sbjct: 363 VKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAR 422

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E F EM      PN+ +Y ALID    AG   +A      M    + PD V  + L+TAC
Sbjct: 423 EAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTAC 482

Query: 208 GQS-----------------------------------GAVDRAFDVLAEMNAEVHPVDP 232
           G+                                    G   +A ++ A M A    V+P
Sbjct: 483 GRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMAS--NVNP 540

Query: 233 DHITIGALMKACANAG---------------QVDRAREVYK-MIHKYNIKGT-------- 268
           D +T   L+      G               ++   +EVY  +I  Y  +G         
Sbjct: 541 DAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTF 600

Query: 269 ---------PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
                    P+V  YT  I   +  G W  A  ++ +M    V PD +  S+L++     
Sbjct: 601 SSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRG 660

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            + E   ++++  K + I +   +Y  ++ +CS  ++W+ A E+ EH+ S     +V T+
Sbjct: 661 SQHERVLQLMELMKEKCIPLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLSSISVGTL 720

Query: 378 NALITALCDGDQLPKTMEVLSDMKS----LGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           N L+T L    +    M++   M S    +G+   T+    LL   + +  +EV    L 
Sbjct: 721 NHLLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKYIEV----LQ 776

Query: 434 QAKEDGVIPNLVMFKCIIGMCSR 456
             ++ GV P L M++ ++    R
Sbjct: 777 WMEDAGVSPTLYMYQNVLPYIWR 799



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 165/386 (42%), Gaps = 10/386 (2%)

Query: 90  PTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P + T+  +M    VC   +D +  F ++  V E G+K +   Y  L+   A  G     
Sbjct: 330 PDVVTYTSIMHSYYVCGKVEDCKAVFDMM--VAE-GVKPNIVSYNALLGAYASRGMHADA 386

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +F  +   G+ P+V +Y  L++   ++GQ  KA  A+  MR  + +P+ V +NALI A
Sbjct: 387 LGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDA 446

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            G +G    A  +L EM  +  P  PD ++I  L+ AC    Q+ +   + +      IK
Sbjct: 447 YGSAGMFKEAISLLHEMEKDGIP--PDVVSISTLLTACGRCRQITKIDTILEAAKSRGIK 504

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y   I      GD+  A  +Y  M    V PD V  + LI      GK   + + 
Sbjct: 505 LNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKF 564

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            ++  +  I +    YSSL+ +        +A   +  MK     P V T  A+I A  D
Sbjct: 565 FEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYND 624

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
                   ++  +M+   + P+ I  S L+ A  R    E  L L+   KE  +  N   
Sbjct: 625 DGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELMKEKCIPLNQKA 684

Query: 447 FKCIIGMCS--RRYEKARTLNEHVLS 470
           +  II  CS  R ++ A  + EH+ S
Sbjct: 685 YFEIIASCSMLRDWKTASEIIEHLDS 710



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 160/366 (43%), Gaps = 1/366 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+   A +     A  ++  +  A +      Y  +I  C  +G      E+
Sbjct: 188 PDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALEL 247

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M   G+ P++ T+  ++       Q +KA   + +M+  N+ PD    N +I    +
Sbjct: 248 CKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFTLNIVIHCLVK 307

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G    A ++L  M  +     PD +T  ++M +    G+V+  + V+ M+    +K   
Sbjct: 308 DGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNI 367

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +   +  G    A  ++  + + G+ PD V  + L++  G +G+ E A E  +E
Sbjct: 368 VSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKE 427

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            +       I+SY++L+ A  +A  +++A+ L   M+   + P V +++ L+TA     Q
Sbjct: 428 MRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQ 487

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + K   +L   KS G+  N + Y+  + +     D    L L +      V P+ V +  
Sbjct: 488 ITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPDAVTYNI 547

Query: 450 II-GMC 454
           +I G+C
Sbjct: 548 LISGLC 553



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 135/288 (46%), Gaps = 10/288 (3%)

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           R  F  LI     +G++  A  V   M  + +    + I  G +++  A   Q+D+AR +
Sbjct: 119 RRNFPLLIREITFAGSLQHAVHVFRWMKNQENYCARNDI-YGMMIRLHARHSQIDQARGL 177

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  + ++  K   ++Y   I+  ++ G W +A ++ DDM +  + P     + +I+  G 
Sbjct: 178 FFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGA 237

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           AG  + A E+ ++    G+   +++++ ++ A  N   + KA+  +E MK   + P   T
Sbjct: 238 AGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTFT 297

Query: 377 MNALITALCDGDQLPKTMEVLSDM--KSLGLCPNTITYSILL---VACERKDDVEVGLML 431
           +N +I  L    Q  + +E+L+ M  K     P+ +TY+ ++     C + +D +    +
Sbjct: 298 LNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKA---V 354

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN-EHVLSFNSGRPQI 478
                 +GV PN+V +  ++G  + R   A  L    +L  N  RP +
Sbjct: 355 FDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDV 402


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 112/470 (23%), Positives = 216/470 (45%), Gaps = 49/470 (10%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           +V   L  +  L  +G +      L  M+  G++     Y+   + + KS    +EA   
Sbjct: 146 NVGTFLTIFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYD-REAMEV 204

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           +K++      P++ T+++LM +    +D E    +LR +++ G+K +   YT  I    +
Sbjct: 205 YKVMATDGIVPSVRTYSVLM-LAFGKRDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQ 263

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +G+ +  +++  +M + G +P+V T   LI     AG+V+ A   +  M++ + KPDRV 
Sbjct: 264 AGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVT 323

Query: 200 FNALITACG-----------------------------------QSGAVDRAFDVLAEMN 224
           +  L+  CG                                   Q G VD A DV  +M 
Sbjct: 324 YITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMK 383

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQ 281
            +   ++P   +  +L+     A +++ A E++  +   NI G TP  YT  + IN   +
Sbjct: 384 QK--GIEPQQYSYNSLISGFLKADRLNHALELFNHM---NIHGPTPNGYTYVLFINYYGK 438

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
           +G+   A   Y+ M  KG++PD V  +A++     +G++  A  +  E K+ G+    I+
Sbjct: 439 SGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNIT 498

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           Y+ ++  CS A N  +A++++  M   +  P V  +N+LI  L    +  +  ++  ++K
Sbjct: 499 YTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELK 558

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            + L P   TY+ LL    R+  V+  + LL +   +   PNL+ +  ++
Sbjct: 559 EMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVL 608



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 188/423 (44%), Gaps = 11/423 (2%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CKSQKAI 77
           H V   ++SY   IR     GR  E   +L+ ME +G    D V +     + C + +  
Sbjct: 245 HGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGC-KPDVVTNTVLIQILCDAGRVS 303

Query: 78  KEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
                F+K+  +   P   T+  L+  C  + DS    ++   ++  G   +   YT ++
Sbjct: 304 DAKDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVV 363

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               + G+VD   +VF +M   GIEP  ++Y +LI G  KA ++  A   +  M      
Sbjct: 364 DALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALELFNHMNIHGPT 423

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+   +   I   G+SG   +A      M ++   + PD +   A++ + A +G++  A+
Sbjct: 424 PNGYTYVLFINYYGKSGESLKAIKRYELMKSK--GIVPDVVAGNAVLYSLAKSGRLGMAK 481

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            V+  +    +      YT+ I CCS+  + + A  V+ +M +   +PD + +++LID  
Sbjct: 482 RVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTL 541

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             AG+   A++I  E K   +     +Y++L+         ++ + L E M S    P +
Sbjct: 542 YKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNL 601

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N ++  LC   ++   + +L +M   G  P+  +Y+  L    ++D +     +  Q
Sbjct: 602 ITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQ 661

Query: 435 AKE 437
            K+
Sbjct: 662 MKK 664



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 177/447 (39%), Gaps = 76/447 (17%)

Query: 79  EAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           EA + FK V        T  + N ++ +  +        QV  L+Q   +KA+   + T+
Sbjct: 94  EALQLFKSVAQQPRIVHTTESCNYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTI 153

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG------QVAKAFGAYGI 187
             +    G + +       M  AGI  N +TY  LI    K+G      +V K     GI
Sbjct: 154 FRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATDGI 213

Query: 188 ----------------------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
                                       M    VKP+   +   I   GQ+G  + A+ +
Sbjct: 214 VPSVRTYSVLMLAFGKRDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKI 273

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L +M  E     PD +T   L++   +AG+V  A++V+  +   + K     Y   ++ C
Sbjct: 274 LQKMEDE--GCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKC 331

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
              GD      +++ M   G   + V  +A++D     G+V+ A ++  + K +GI    
Sbjct: 332 GDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQ 391

Query: 340 ISYSSLMGACSNAKNWQKALELYEH----------------------------------- 364
            SY+SL+     A     ALEL+ H                                   
Sbjct: 392 YSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYEL 451

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           MKS  + P V   NA++ +L    +L     V  ++KS+G+CP+ ITY++++  C +  +
Sbjct: 452 MKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASN 511

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +  + + S+  E   +P+++    +I
Sbjct: 512 ADEAMKVFSEMIETRCVPDVLAVNSLI 538



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 190/457 (41%), Gaps = 42/457 (9%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVPNPT 91
            L + G ++  + +L +M  KG +     Y+     + K  + + EAFR F   K V  P 
Sbjct: 611  LCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDR-LTEAFRIFCQMKKVLAPD 669

Query: 92   LSTF---------NMLMS----------VCASSKDSEGAFQVLR--LVQEAGLKA----- 125
             +T          N LM+          +   SK    +F  L   +++ AG++      
Sbjct: 670  YTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIEFA 729

Query: 126  ----------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
                      D    + LI    KS K     E+  +  + G+     +Y ALI G    
Sbjct: 730  ENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLVDE 789

Query: 176  GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
              +  A G +  M+     PD   +N ++ A G+S  ++    V  EM+ + +  +  ++
Sbjct: 790  NLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGY--ESTYV 847

Query: 236  TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
            T   ++     +  +  A ++Y  +       TP  Y   ++   + G  E A  ++D+M
Sbjct: 848  TYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEM 907

Query: 296  TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
               G  P+    + L++    AG  E   E+ Q   +QGI+  I SY+ L+GA   A   
Sbjct: 908  LDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRL 967

Query: 356  QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
              +L  +  +  + L+P + T N LI  L    +L + + + +DM+  G+ PN  TY+ L
Sbjct: 968  NDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSL 1027

Query: 416  LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            ++   ++        +  +  ++G  PN+  +  +IG
Sbjct: 1028 ILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIG 1064



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 139/296 (46%), Gaps = 2/296 (0%)

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            +P   T+N+++     S   E   +V + +   G ++    Y T+I+   KS  +    +
Sbjct: 808  DPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMD 867

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            +++++++ G  P   TYG L+DG  K G++  A   +  M     KP+R ++N L+    
Sbjct: 868  LYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYR 927

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             +G  ++  ++   M  +   ++PD  +   L+ A   AG+++ +   ++ + +  ++  
Sbjct: 928  LAGNTEKVCELFQNMVDQ--GINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPD 985

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
               Y + I+   ++G  E A S+++DM K G+ P+    ++LI + G  GK   A ++ +
Sbjct: 986  LITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYE 1045

Query: 329  EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            E    G    + +Y++L+G  S + +   A   Y  M      P  ST   L   L
Sbjct: 1046 ELLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQLPNQL 1101



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 159/388 (40%), Gaps = 11/388 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + GR+     +  +++  G+   D + +      C       EA + F  +      P
Sbjct: 471 LAKSGRLGMAKRVFHELKSIGVCP-DNITYTMMIKCCSKASNADEAMKVFSEMIETRCVP 529

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-ADCKLYTTLITTCAKSGKVDAMFEV 149
            +   N L+     +     A+++   ++E  L   DC  Y TL+    + GKV  +  +
Sbjct: 530 DVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCT-YNTLLAGLGREGKVKEVMHL 588

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM +    PN+ TY  ++D   K G+V  A G    M  K   PD   +N  +    +
Sbjct: 589 LEEMNSNSYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVK 648

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGT 268
              +  AF +  +M   +    PD+ T+  ++ +    G ++ A    K  I +   K  
Sbjct: 649 EDRLTEAFRIFCQMKKVLA---PDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKAD 705

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +   +    +    E +    +++    ++ D+ FLS LI     + K   A E+++
Sbjct: 706 RSSFHSLMEGILKRAGMEKSIEFAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVK 765

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + ++ G+S+   SY++L+    +      A  L+  MK +   P   T N ++ A+    
Sbjct: 766 KFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSM 825

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILL 416
           ++   ++V  +M   G     +TY+ ++
Sbjct: 826 RIEDMLKVQKEMHCKGYESTYVTYNTII 853



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 3/192 (1%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAFR-FFKLVPNPT 91
            L++ G+I +  DL ++M   G      +Y+     + +  + + + E F+       NP 
Sbjct: 891  LLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPD 950

Query: 92   LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
            + ++ +L+    ++     +    R + E GL+ D   Y  LI    +SG+++    +F+
Sbjct: 951  IKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSLFN 1010

Query: 152  EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            +M  +GI PN++TY +LI    K G+ A+A   Y  +     KP+   +NALI     SG
Sbjct: 1011 DMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSVSG 1070

Query: 212  AVDRAFDVLAEM 223
            + D AF    +M
Sbjct: 1071 STDNAFASYGQM 1082


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 205/437 (46%), Gaps = 17/437 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +  ++ E   +L+ M  + L+     Y++    +CK+ +  +        
Sbjct: 157 TYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDK 216

Query: 87  VPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
             +P + T++ L+S +C   +  E A Q+L  +   G K D   Y  LI   A+   V  
Sbjct: 217 GFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSE 276

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++F  ++  G EP V TY  LIDG  K  +V +AF  +  +    ++PD + +   I 
Sbjct: 277 ALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 336

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              ++G V+ A  +L +M+ +     PD ++  A++       +VD A EV  ++     
Sbjct: 337 GLCKAGRVEDALLMLKDMDEK--GCVPDVVSHNAVINGLCKEKRVDEA-EV--LLSGMEA 391

Query: 266 KG-TPEVYTIAINCCSQ--TGDWEFACSVYDDMTKKGVIPDEVFLSALIDF---AGHAGK 319
           KG +P   +     C Q   G W+ A + + +M K+GV P  V  + L+D    A   G+
Sbjct: 392 KGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGR 451

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A  +      +G    +++YS+L+     A     A  L   M++    P V T N+
Sbjct: 452 IKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNS 511

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI+ LC  D++ + +E+   M   G  P+TITY  ++ A  +++ V+  L L   + E G
Sbjct: 512 LISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAG 571

Query: 440 VIPNLVM-FKCIIGMCS 455
           V+P   M F  I G+C+
Sbjct: 572 VVPTSGMYFSLIDGLCA 588



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 183/402 (45%), Gaps = 15/402 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN-- 89
           N L + GR+ E   L+ D   KG       Y      +C+  + ++ A +   K+V N  
Sbjct: 198 NGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGC 254

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + ++N L+   A  +    A ++   V   G + +   Y  LI    K  +V+  FE
Sbjct: 255 KPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFE 314

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  +V  G+EP+  TY   IDG  KAG+V  A      M  K   PD V  NA+I    
Sbjct: 315 LFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLC 374

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   VD A  +L+ M A+     P+ I+   L+     AG+  +A   +K + K  +K T
Sbjct: 375 KEKRVDEAEVLLSGMEAK--GCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPT 432

Query: 269 PEVYTIAIN--C-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
              Y I ++  C   Q G  + A +++D M +KG +PD V  SALID  G AGK++ A  
Sbjct: 433 VVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARR 492

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L   + +G    + +Y+SL+          +ALEL+  M      P   T   +I+ALC
Sbjct: 493 LLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALC 552

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDD 424
             + + K + +       G+ P +  Y  L   L A  R D+
Sbjct: 553 KQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDE 594



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 203/439 (46%), Gaps = 21/439 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN L+      GR+S+   L E M + G       Y+      CK  K + EA + F  
Sbjct: 87  TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGK-LDEALKIFDG 145

Query: 85  --KLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             K    P + T+N L++  C + K  E    + R+V E+ L  D   Y +L+    K+G
Sbjct: 146 AVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSES-LVPDVVTYNSLVNGLCKNG 204

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDG-CAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           +VD   E    +V+ G  PNV TY  LI G C +  ++  A      M     KPD V +
Sbjct: 205 RVD---EARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSY 261

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           NALI    +   V  A  +   +  + +  +P+  T   L+       +V+ A E++  +
Sbjct: 262 NALIHGLAREQGVSEALKLFGSVLRQGY--EPEVPTYNILIDGLLKEDRVNEAFELFSGL 319

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            K+ ++     YT+ I+   + G  E A  +  DM +KG +PD V  +A+I+      +V
Sbjct: 320 VKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRV 379

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A  +L   + +G S   IS+++L+     A  W+KA+  ++ M    +KPTV T N L
Sbjct: 380 DEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNIL 439

Query: 381 ITALCDGDQLPKTMEVLSDMKSL---GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           +  LC   Q  +  E ++   ++   G  P+ +TYS L+    +   ++    LL   + 
Sbjct: 440 VDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEA 499

Query: 438 DGVIPNLVMFKCII-GMCS 455
            G IPN+  +  +I G+C 
Sbjct: 500 KGCIPNVYTYNSLISGLCG 518



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 201/436 (46%), Gaps = 23/436 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFRFFKLVPN 89
           L++ G+I +    +E +  KGL D+   ++     +C++ +      + +  R     PN
Sbjct: 26  LLKSGKIEKAHRFVEQLLVKGLCDI-STFNIYISGLCRASRIGDAQTVFDGMRKHGFWPN 84

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
               T+N L+S +C   + S+      R+++ AG   D   Y TL+    K GK+D   +
Sbjct: 85  RI--TYNALLSGLCNGGRMSDAQALYERMIK-AGYSPDVVTYNTLLHGFCKVGKLDEALK 141

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F   V  G  P+V TY ALI+G  KA ++ +A      M S+++ PD V +N+L+    
Sbjct: 142 IFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLC 201

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKG 267
           ++G VD A  ++ +         P+ IT   L+   C    +++ AR+   ++ K  + G
Sbjct: 202 KNGRVDEARMLIVDKG-----FSPNVITYSTLISGLCRELRRLESARQ---LLEKMVLNG 253

Query: 268 -TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P++  Y   I+  ++      A  ++  + ++G  P+    + LID      +V  AF
Sbjct: 254 CKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAF 313

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+       G+    I+Y+  +     A   + AL + + M      P V + NA+I  L
Sbjct: 314 ELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGL 373

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++ +   +LS M++ G  PN I+++ L+    R    +  +    +  + GV P +
Sbjct: 374 CKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTV 433

Query: 445 VMFKCII-GMCSRRYE 459
           V +  ++ G+C  R E
Sbjct: 434 VTYNILVDGLCKARQE 449



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 127/260 (48%), Gaps = 18/260 (6%)

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-----TPEVYTIAINCCSQ 281
           V    PD  T+G L+++   +G++++A   ++ + +  +KG     T  +Y   +   S+
Sbjct: 9   VRIYSPDAYTVGILLRSLLKSGKIEKA---HRFVEQLLVKGLCDISTFNIYISGLCRASR 65

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
            GD   A +V+D M K G  P+ +  +AL+    + G++  A  + +     G S  +++
Sbjct: 66  IGD---AQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVT 122

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           Y++L+          +AL++++        P V T NALI   C  D+L +   +L  M 
Sbjct: 123 YNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV 182

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS--RRY 458
           S  L P+ +TY+ L+    +   V+   ML+    + G  PN++ +  +I G+C   RR 
Sbjct: 183 SESLVPDVVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRELRRL 239

Query: 459 EKARTLNEHVLSFNSGRPQI 478
           E AR L E ++  N  +P I
Sbjct: 240 ESARQLLEKMV-LNGCKPDI 258



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 150/314 (47%), Gaps = 18/314 (5%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFR 82
           ++ +YN LI    ++ R++E  +L   + + GL + D + +  F + +CK+ + +++A  
Sbjct: 292 EVPTYNILIDGLLKEDRVNEAFELFSGLVKHGL-EPDAITYTVFIDGLCKAGR-VEDALL 349

Query: 83  FFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             K +      P + + N +++     K  + A  +L  ++  G   +   + TLI    
Sbjct: 350 MLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQC 409

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---GQVAKAFGAYGIMRSKNVKP 195
           ++GK       F EM+  G++P V TY  L+DG  KA   G++ +A   +  M  K   P
Sbjct: 410 RAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVP 469

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D V ++ALI   G++G +D A  +L  M A+     P+  T  +L+       +VD A E
Sbjct: 470 DVVTYSALIDGLGKAGKLDDARRLLGAMEAK--GCIPNVYTYNSLISGLCGLDKVDEALE 527

Query: 256 VY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           ++  M+ K  +  T    TI    C Q    + A +++D   + GV+P      +LID  
Sbjct: 528 LFVAMVEKGCVPDTITYGTIISALCKQEM-VDKALALFDGSLEAGVVPTSGMYFSLIDGL 586

Query: 315 GHAGKVEAAFEILQ 328
               +V+ A ++LQ
Sbjct: 587 CAVARVDEALKLLQ 600



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 147/351 (41%), Gaps = 28/351 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN LI    R+  +SE + L   + R+G       Y+     + K  + + EAF  F  
Sbjct: 260 SYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDR-VNEAFELFSG 318

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           LV +   P   T+ + +     +   E A  +L+ + E G   D   +  +I    K  +
Sbjct: 319 LVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKR 378

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD    +   M   G  PN  ++  LI G  +AG+  KA   +  M  + VKP  V +N 
Sbjct: 379 VDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNI 438

Query: 203 LITA---CGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           L+       Q G +  A   FD + E         PD +T  AL+     AG++D AR  
Sbjct: 439 LVDGLCKARQEGRIKEAITLFDAMIEKGRV-----PDVVTYSALIDGLGKAGKLDDAR-- 491

Query: 257 YKMIHKYNIKG-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            +++     KG  P VYT    I+        + A  ++  M +KG +PD +    +I  
Sbjct: 492 -RLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISA 550

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 363
                 V+ A  +   +   G+      Y SL+ G C+ A+   +AL+L +
Sbjct: 551 LCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVAR-VDEALKLLQ 600


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 168/360 (46%), Gaps = 2/360 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L  +  +++  A  +D E        ++  GL      Y  ++    K+G +    ++  
Sbjct: 157 LGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKALDILE 216

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   G+ PN   Y  ++DG A+ G    AF  +  M S  +KPD V++N L+ A  ++G
Sbjct: 217 EMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAG 276

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +D+A  VL   N E + + P   T  +++      G + +A EV+  I    ++     
Sbjct: 277 RMDKALGVLE--NIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVS 334

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   ++  ++    E A  + ++M   GV+P+E   +AL +    AG VE AF + Q  K
Sbjct: 335 YNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMK 394

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            + +++ I++Y +L+ AC  +   Q+A E+++ +    LK    T   ++       +L 
Sbjct: 395 KENLAIDIVAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELS 454

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           K  ++L+DM+  G   +TI Y+  + AC R  D E     L+  +E  +  N   +  +I
Sbjct: 455 KARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLI 514



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 193/406 (47%), Gaps = 33/406 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+++  P L  + +L+   A   D   A      ++ + +K +  +YT+LI   A++  +
Sbjct: 9   FQVIDKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDM 68

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +       EM++ GI+ N   + ++I G A AG    A   +   +++N+ P  +V+N++
Sbjct: 69  EGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSI 128

Query: 204 ITACGQSGAVDRAFDVLAEMN------------------AEVHP---------------V 230
           + A  Q+G ++    +LA+M                   AE+                 +
Sbjct: 129 VQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGL 188

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P   T G ++K    AG + +A ++ + + K+ +     +Y + ++  ++ GD+  A  
Sbjct: 189 SPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFK 248

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++DM   G+ PD V  + L+     AG+++ A  +L+  +   +   I +Y+S++    
Sbjct: 249 VWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYV 308

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
              N QKALE+++ +K+  L+P V + N+L++ L    Q+     +L++M + G+ PN  
Sbjct: 309 KGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNER 368

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           +Y+ L     R  DVE    +  + K++ +  ++V +  ++  C +
Sbjct: 369 SYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCK 414



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 166/354 (46%), Gaps = 7/354 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
             + G +++ +D+LE+M++ G+   +K+ +A   +          AF+ ++ + +    P
Sbjct: 202 FTKAGNMAKALDILEEMDKHGV-SPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKP 260

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            +  +N+L+     +   + A  VL  ++   L    + YT+++    K G +    EVF
Sbjct: 261 DIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVF 320

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             +  AG+ P V +Y +L+ G AKA Q+  A      M +  V P+   + AL     ++
Sbjct: 321 DRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARA 380

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G V++AF +   M  E   +D   +  GAL+KAC  +G + RA EV++ I    +K    
Sbjct: 381 GDVEKAFGMFQRMKKENLAIDI--VAYGALLKACCKSGAMQRAAEVFQQITDAGLKHNRI 438

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   ++  ++ G+   A  + +DM K G   D +  ++ I     +G  E   E L   
Sbjct: 439 TYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKACFRSGDTEEVTETLAVM 498

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           + + + V   +Y++L+     A +  +A+  YE  K+  L+   +  N L++ L
Sbjct: 499 REKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLDSALSNCLLSGL 552


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/435 (23%), Positives = 199/435 (45%), Gaps = 13/435 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LI    R   ++    +   M  KG    +  Y      +C++ + I E    FK 
Sbjct: 251 TYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGR-IDEGISLFKK 309

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      PT+ T+ +++     +  +     +   ++E   + +   YT ++    K  K
Sbjct: 310 MREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERK 369

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D    + +EM+  G+ P+V TY ALI G  + G++  A    G+M S N +P+   +N 
Sbjct: 370 LDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNE 429

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    +   V +A  +L++M      + P  +T  +L+     AG  D A ++  ++ +
Sbjct: 430 LICGFSKRKHVHKAMTLLSKMLES--KLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKE 487

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             +      Y++ I+   ++   E AC +++ + +KG+  +EV  +ALID    AGK++ 
Sbjct: 488 NGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDE 547

Query: 323 AFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           A  +L+   ++       +Y+SL+ G C   K  Q+ L + E+M  + +KPTV+T   LI
Sbjct: 548 AISLLERMHSEDCLPNSSTYNSLIYGVCKEGK-VQEGLSMVENMSKMGVKPTVATYTILI 606

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             +           V + M S G  P+  TY+  +       +V+    ++++  E GV+
Sbjct: 607 EEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVM 666

Query: 442 PNLVMFKCIIGMCSR 456
           P+ + +  +I    R
Sbjct: 667 PDSLTYTLLISAYER 681



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 191/446 (42%), Gaps = 44/446 (9%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           ARF  + + ++   E      +VPN  + T N +++  +   +   A   +  + +AGL 
Sbjct: 190 ARFLMIDEMKRVYTEMLNDM-IVPN--IYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLS 246

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
            D   YT+LI    ++  V++ ++VF+ M N G   N  +Y  +I G  +AG++ +    
Sbjct: 247 PDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISL 306

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
           +  MR  +  P    +  +I A   +       D+  EM                     
Sbjct: 307 FKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEM--------------------- 345

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
                  R R     +H          YT+ ++   +    + +  + ++M +KG++P  
Sbjct: 346 -------RERSCEPNVH---------TYTVMVDAMCKERKLDESRRILNEMMEKGLVPSV 389

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V  +ALI      G++EAA EIL   ++        +Y+ L+   S  K+  KA+ L   
Sbjct: 390 VTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSK 449

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M   KL P++ T N+LI   C         ++L  +K  GL P+  TYS+ +    +   
Sbjct: 450 MLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKR 509

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKW 482
           +E    L +  KE G+  N VM+  +I G C + + ++A +L E + S     P   + +
Sbjct: 510 MEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHS-EDCLPN-SSTY 567

Query: 483 TSLALMVYREAIVAGTIPTVEVVSKV 508
            SL   V +E  V   +  VE +SK+
Sbjct: 568 NSLIYGVCKEGKVQEGLSMVENMSKM 593



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 159/362 (43%), Gaps = 11/362 (3%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +H+Y  ++    ++ ++ E   +L +M  KGL+     Y+A     C+  + I+ A   
Sbjct: 353 NVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGR-IEAALEI 411

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             L+ +    P   T+N L+   +  K    A  +L  + E+ L      Y +LI    K
Sbjct: 412 LGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCK 471

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +G  D+ +++   +   G+ P+  TY   ID   K+ ++ +A   +  ++ K +K + V+
Sbjct: 472 AGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVM 531

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           + ALI    ++G +D A  +L  M++E     P+  T  +L+      G+V     + + 
Sbjct: 532 YTALIDGHCKAGKIDEAISLLERMHSE--DCLPNSSTYNSLIYGVCKEGKVQEGLSMVEN 589

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + K  +K T   YTI I    + GD++ A  V++ M   G  PD    +A I     +G 
Sbjct: 590 MSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGN 649

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           V+ A  ++      G+    ++Y+ L+ A         A  + + M      P+    N 
Sbjct: 650 VKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLKRMLDAGCDPSHPIWNN 709

Query: 380 LI 381
           LI
Sbjct: 710 LI 711



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 4/267 (1%)

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +N L+    +   +D    V  EM  ++  + P+  T+  ++ A +  G +  A      
Sbjct: 182 YNELLMMLARFLMIDEMKRVYTEMLNDM--IVPNIYTLNTMVNAYSKMGNIVEANLYVSK 239

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           I +  +      YT  I    +  D   A  V++ M  KG   +EV  + +I     AG+
Sbjct: 240 IFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGR 299

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++    + ++ +       + +Y+ ++ A        + ++L+  M+    +P V T   
Sbjct: 300 IDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTV 359

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           ++ A+C   +L ++  +L++M   GL P+ +TY+ L+     +  +E  L +L   + + 
Sbjct: 360 MVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNN 419

Query: 440 VIPNLVMFKCII-GMCSRRY-EKARTL 464
             PN   +  +I G   R++  KA TL
Sbjct: 420 CRPNERTYNELICGFSKRKHVHKAMTL 446


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 170/367 (46%), Gaps = 40/367 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T N+++     + D+E A  ++  +   GLK     Y +++    +SG  D  +EV
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 248

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM + G+ P+V ++  LI G  + G++ +A   Y  MR + +KPD V F+ LI    +
Sbjct: 249 FKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 308

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D A   L EM      + PD +                                  
Sbjct: 309 RGKMDHAMAYLREMRC--FGLVPDGV---------------------------------- 332

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +YT+ I    + G    A  V D+M   G +PD V  + L++      ++  A  +L E
Sbjct: 333 -IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE 391

Query: 330 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            + +G+   + ++++L+ G C   K   KAL+L++ M + +L+P + T N LI  +C   
Sbjct: 392 MRERGVPPDLCTFTTLIHGYCIEGK-LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQG 450

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L K  ++  DM S  + PN +TYSIL+ +   K  VE     L +    G++PN++ + 
Sbjct: 451 DLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYN 510

Query: 449 CII-GMC 454
            II G C
Sbjct: 511 SIIKGYC 517



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 195/442 (44%), Gaps = 20/442 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
            R G     + L++ M  KGL      Y++    +C+S    K A+  FK + +    P 
Sbjct: 202 FRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDK-AWEVFKEMDDFGVAPD 260

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + +F +L+       + E A ++ + ++  G+K D   ++ LI   A+ GK+D       
Sbjct: 261 VRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLR 320

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   G+ P+   Y  +I G  +AG ++ A      M      PD V +N L+    +  
Sbjct: 321 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 380

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +  A  +L EM     P  PD  T   L+      G++D+A +++  +    ++     
Sbjct: 381 RLLDAEGLLNEMRERGVP--PDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 438

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+   + GD + A  ++DDM  + + P+ V  S LID     G+VE AF  L E  
Sbjct: 439 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMI 498

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N+GI   I++Y+S++     + N  K  +  + M   K+ P + T N LI      D++ 
Sbjct: 499 NKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMH 558

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              ++L+ M+   + P+ +TY++L+       +V+    +  +    G+ P+        
Sbjct: 559 DAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPD-------- 610

Query: 452 GMCSRRYEKARTLNEHVLSFNS 473
                RY     +N HV + NS
Sbjct: 611 -----RYTYMSMINGHVTAGNS 627



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 174/413 (42%), Gaps = 42/413 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R G   +  ++ ++M+  G+    + +       C+  + I+EA + +K + +    P
Sbjct: 236 LCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE-IEEALKIYKEMRHRGIKP 294

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L +F+ L+ + A     + A   LR ++  GL  D  +YT +I    ++G +     V 
Sbjct: 295 DLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVR 354

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EMV  G  P+V TY  L++G  K  ++  A G    MR + V PD   F  LI      
Sbjct: 355 DEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIE 414

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D+A  +   M  +   + PD +T   L+      G +D+A +++  +H   I     
Sbjct: 415 GKLDKALQLFDTMLNQ--RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHV 472

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG------------ 318
            Y+I I+   + G  E A    D+M  KG++P+ +  +++I     +G            
Sbjct: 473 TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 532

Query: 319 -----------------------KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
                                  K+  AF++L   + + +   +++Y+ L+   S   N 
Sbjct: 533 MVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNV 592

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
           Q+A  ++E M +  ++P   T  ++I          +  ++  +M   G  P+
Sbjct: 593 QEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 123/278 (44%), Gaps = 7/278 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++ R+ +   LL +M  +G+      +       C   K + +A + F  + N   
Sbjct: 374 NGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK-LDKALQLFDTMLNQRL 432

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N L+       D + A  +   +    +  +   Y+ LI +  + G+V+  F 
Sbjct: 433 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 492

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EM+N GI PN+ TY ++I G  ++G V+K       M    V PD + +N LI    
Sbjct: 493 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYI 552

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +  AF +L  M  E   V PD +T   L+   +  G V  A  +++ +    I+  
Sbjct: 553 KEDKMHDAFKLLNMMEKE--KVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPD 610

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
              Y   IN     G+ + A  ++D+M ++G  PD+ F
Sbjct: 611 RYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDDKF 648



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 124/258 (48%), Gaps = 2/258 (0%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P   VF+ LI    QS     AF+    +    H V        AL+ A + AG    A 
Sbjct: 84  PQPRVFDLLIRTYTQSRKPREAFEAFRLILD--HRVPIPAAASNALLAALSRAGWPHLAA 141

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           + Y+++   N +       I ++   +  +++   +V  +M K+ V PD V  + ++D  
Sbjct: 142 DAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDAR 201

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             AG  EAA  ++    ++G+  GI++Y+S++     +  W KA E+++ M    + P V
Sbjct: 202 FRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDV 261

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            +   LI   C   ++ + +++  +M+  G+ P+ +++S L+    R+  ++  +  L +
Sbjct: 262 RSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLRE 321

Query: 435 AKEDGVIPNLVMFKCIIG 452
            +  G++P+ V++  +IG
Sbjct: 322 MRCFGLVPDGVIYTMVIG 339



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 11/202 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    RQG + +  DL +DM  + +      Y     + C+  + +++AF F   
Sbjct: 438 TYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQ-VEDAFGFLDE 496

Query: 87  VPN----PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + N    P + T+N ++   C S   S+G  + L+ +    +  D   Y TLI    K  
Sbjct: 497 MINKGILPNIMTYNSIIKGYCRSGNVSKGQ-KFLQKMMVNKVSPDLITYNTLIHGYIKED 555

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+   F++ + M    ++P+V TY  LI+G +  G V +A   +  M +K ++PDR  + 
Sbjct: 556 KMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYM 615

Query: 202 ALITACGQSGAVDRAFDVLAEM 223
           ++I     +G    AF +  EM
Sbjct: 616 SMINGHVTAGNSKEAFQLHDEM 637



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 16/191 (8%)

Query: 22  AHDVSEQLHS---------YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           A+D+ + +HS         Y+ LI     +G++ +    L++M  KG+L     Y++   
Sbjct: 455 ANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 514

Query: 69  NVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
             C+S    K      K++ N   P L T+N L+           AF++L ++++  ++ 
Sbjct: 515 GYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQP 574

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   Y  LI   +  G V     +F +M   GIEP+ +TY ++I+G   AG   +AF  +
Sbjct: 575 DVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLH 634

Query: 186 GIMRSKNVKPD 196
             M  +   PD
Sbjct: 635 DEMLQRGFAPD 645


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 208/464 (44%), Gaps = 19/464 (4%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK----- 75
           V+   ++Y  LIR    +GR+++ + LL+DM R+G       Y      +C++       
Sbjct: 139 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAM 198

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+ +  R     PN  + T+N++++        + A ++L  +   G + D   YTTL+ 
Sbjct: 199 AVLDEMRAKGCTPN--IVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLK 256

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
               S + D + E+F EM+     PN  T+  LI    + G V +A      M       
Sbjct: 257 GLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCAT 316

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           +  + N +I +  + G VD AF +L +M +  +  +PD I+   ++K    A + D A+E
Sbjct: 317 NTTLCNIVINSICKQGRVDDAFKLLNDMGS--YGCNPDTISYTTVLKGLCRAERWDDAKE 374

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +   + + N       +   I    Q G  E A  + + M++ G     V  +AL++   
Sbjct: 375 LLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFC 434

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G +++A E+    ++       I+Y++L+    NA+    A EL   M      P V 
Sbjct: 435 VQGHIDSALELF---RSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVV 491

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N L++  C    L + +E++  M   G  PN ITY+ LL    +    E  L LL   
Sbjct: 492 TFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGL 551

Query: 436 KEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477
              GV P+++ F  IIG+ S+  R E+A  L  HV+     RP+
Sbjct: 552 VSKGVSPDVITFSSIIGILSKEDRIEEAVQLF-HVVQDIGMRPK 594



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 180/417 (43%), Gaps = 33/417 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+GR+ +  +LL  +   G       Y      +C S++       F +++     
Sbjct: 221 NGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCM 280

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TF+ML+         E A QVL  + E G   +  L   +I +  K G+VD  F++
Sbjct: 281 PNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKL 340

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            ++M + G  P+  +Y  ++ G  +A +   A      M   N  P+ V FN  I    Q
Sbjct: 341 LNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQ 400

Query: 210 SGAVDRAFDVLAEM------------NAEVH------------------PVDPDHITIGA 239
            G +++A  ++ +M            NA V+                  P  P+ IT   
Sbjct: 401 KGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTT 460

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+    NA ++D A E+   + + +       + + ++   Q G  E A  + + M + G
Sbjct: 461 LLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHG 520

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
             P+ +  + L+D        E A E+L    ++G+S  +I++SS++G  S     ++A+
Sbjct: 521 CTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAV 580

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +L+  ++ I ++P     N ++  LC   ++   ++  + M S G  PN  TY IL+
Sbjct: 581 QLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILI 637



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 158/359 (44%), Gaps = 7/359 (1%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           ++ ++C   + S+ A +VLR  + +G   D   Y TL+    + G +DA   +   M   
Sbjct: 82  LIRNLCRRGRTSDAA-RVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSM--- 137

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
            + P+ +TY  LI      G+VA A      M  +  +P+ V +  L+ A  ++   ++A
Sbjct: 138 PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQA 197

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             VL EM A+     P+ +T   ++      G+VD ARE+   +  Y  +     YT  +
Sbjct: 198 MAVLDEMRAK--GCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLL 255

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
                +  W+    ++ +M +K  +P+EV    LI F    G VE A ++L++    G +
Sbjct: 256 KGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCA 315

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
                 + ++ +         A +L   M S    P   +   ++  LC  ++     E+
Sbjct: 316 TNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKEL 375

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           L++M      PN +T++  +    +K  +E  +ML+ Q  E G    +V +  ++ G C
Sbjct: 376 LNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFC 434



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 168/389 (43%), Gaps = 12/389 (3%)

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G  P+V+    LI    + G+ + A              D   +N L+    + G +D A
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             ++  M     PV PD  T   L++   + G+V  A  +   + +   +     YT+ +
Sbjct: 131 RRLIGSM-----PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLL 185

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
               +   +E A +V D+M  KG  P+ V  + +I+     G+V+ A E+L    + G  
Sbjct: 186 EAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQ 245

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
              +SY++L+     +K W    EL+  M      P   T + LI   C G  + + ++V
Sbjct: 246 PDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQV 305

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC- 454
           L  M   G   NT   +I++ +  ++  V+    LL+     G  P+ + +  ++ G+C 
Sbjct: 306 LEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCR 365

Query: 455 SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL-- 512
           + R++ A+ L   ++  N   P  E  + +   ++ ++ ++   I  +E +S+  GC   
Sbjct: 366 AERWDDAKELLNEMVRNNC--PPNEVTFNTFICILCQKGLIEQAIMLIEQMSE-HGCTVG 422

Query: 513 QLPYNADIRERLVENLGVSADALKRSNLC 541
            + YNA +    V+    SA  L RS  C
Sbjct: 423 VVTYNALVNGFCVQGHIDSALELFRSMPC 451



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 7/177 (3%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNV---CKSQKA 76
           D    + ++N L+    ++G + E I+L+E M   G       Y+     +   C S+ A
Sbjct: 485 DCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDA 544

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           ++          +P + TF+ ++ + +     E A Q+  +VQ+ G++    +Y  ++  
Sbjct: 545 LELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLG 604

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
             K  ++D   + F  MV+ G  PN  TY  LI+G A  G + +A     ++ S+ V
Sbjct: 605 LCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRGV 661


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 215/481 (44%), Gaps = 26/481 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    F+ L SV       E A Q    ++   +    +    L+   AK GK D +   
Sbjct: 58  PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 117

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M+ AG  P V TY  +ID   K G V  A G +  M+ + + PD V +N++I   G+
Sbjct: 118 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 177

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D       EM       +PD IT  AL+      G++    E Y+ +    +K   
Sbjct: 178 VGRLDDTVCFFEEMKDMC--CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNV 235

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  ++   + G  + A   Y DM + G++P+E   ++LID     G +  AF +  E
Sbjct: 236 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 295

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+   +++Y++L+    +A+  ++A EL+  M +  + P +++ NALI        
Sbjct: 296 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 355

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + + +E+L+++K  G+ P+ + Y   +      + +E   +++++ KE G+  N +++  
Sbjct: 356 MDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTT 415

Query: 450 IIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
           ++    +       L  H+L         E K   + + V    ++   +   ++VSK +
Sbjct: 416 LMDAYFKSGNPTEGL--HLLD--------EMKELDIEVTVVTFCVLIDGLCKNKLVSKAV 465

Query: 510 GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIV 567
                    D   R+  + G+ A+A   +   ++IDG  + +    A +L E+    G+V
Sbjct: 466 ---------DYFNRISNDFGLQANA---AIFTAMIDGLCKDNQVEAATTLFEQMVQKGLV 513

Query: 568 P 568
           P
Sbjct: 514 P 514



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 116/520 (22%), Positives = 215/520 (41%), Gaps = 78/520 (15%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    + GR+ + +   E+M+          Y+A     CK  K +     F++ 
Sbjct: 167 TYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGK-LPIGLEFYRE 225

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + +++ L+         + A +    ++  GL  +   YT+LI    K G 
Sbjct: 226 MKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGN 285

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +   F + +EM+  G+E NV TY ALIDG   A ++ +A   +G M +  V P+   +NA
Sbjct: 286 LSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNA 345

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    ++  +DRA ++L E+      + PD +  G  +    +  +++ A+ V   + +
Sbjct: 346 LIHGFVKAKNMDRALELLNELKG--RGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKE 403

Query: 263 YNIKGTPEVYTIAINCCSQTG---------------DWEFA----CSVYDDMTKK----- 298
             IK    +YT  ++   ++G               D E      C + D + K      
Sbjct: 404 CGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSK 463

Query: 299 ------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
                       G+  +    +A+ID      +VEAA  + ++   +G+     +Y+SLM
Sbjct: 464 AVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLM 523

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                  N  +AL L + M  I +K  +    +L+  L   +QL K    L +M   G+ 
Sbjct: 524 DGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIH 583

Query: 407 PNTITYSILLVACERK--------DDVEVGLMLLSQ----AKEDGVIPNLVMFKCIIGMC 454
           P+     +L ++  +K        + VE+   L+      +  D  +PN+   + ++   
Sbjct: 584 PD----EVLCISVLKKHYELGCIDEAVELQSYLMKHQLLTSDNDNALPNIYSDQNLVS-- 637

Query: 455 SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAI 494
           SR +E+  T             +I N    L L +Y+ AI
Sbjct: 638 SREHEEQET-------------RISNLQPKLLLGIYKLAI 664



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 2/165 (1%)

Query: 289 CSVYDDM--TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
           C V+D +  T+   +P      AL       G +E A +   + K   +     S + L+
Sbjct: 43  CDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLL 102

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
              +           ++ M     +PTV T N +I  +C    +     +  +MK  GL 
Sbjct: 103 HRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLV 162

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           P+T+TY+ ++    +   ++  +    + K+    P+++ +  +I
Sbjct: 163 PDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALI 207


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 170/367 (46%), Gaps = 40/367 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T N+++     + D+E A  ++  +   GLK     Y +++    +SG  D  +EV
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 187

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM + G+ P+V ++  LI G  + G++ +A   Y  MR + +KPD V F+ LI    +
Sbjct: 188 FKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 247

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D A   L EM      + PD +                                  
Sbjct: 248 RGKMDHAMAYLREMRC--FGLVPDGV---------------------------------- 271

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +YT+ I    + G    A  V D+M   G +PD V  + L++      ++  A  +L E
Sbjct: 272 -IYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE 330

Query: 330 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            + +G+   + ++++L+ G C   K   KAL+L++ M + +L+P + T N LI  +C   
Sbjct: 331 MRERGVPPDLCTFTTLIHGYCIEGK-LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQG 389

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L K  ++  DM S  + PN +TYSIL+ +   K  VE     L +    G++PN++ + 
Sbjct: 390 DLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYN 449

Query: 449 CII-GMC 454
            II G C
Sbjct: 450 SIIKGYC 456



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/490 (23%), Positives = 212/490 (43%), Gaps = 24/490 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
            R G     + L++ M  KGL      Y++    +C+S    K A+  FK + +    P 
Sbjct: 141 FRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDK-AWEVFKEMDDFGVAPD 199

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + +F +L+       + E A ++ + ++  G+K D   ++ LI   A+ GK+D       
Sbjct: 200 VRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLR 259

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   G+ P+   Y  +I G  +AG ++ A      M      PD V +N L+    +  
Sbjct: 260 EMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKER 319

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +  A  +L EM     P  PD  T   L+      G++D+A +++  +    ++     
Sbjct: 320 RLLDAEGLLNEMRERGVP--PDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 377

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+   + GD + A  ++DDM  + + P+ V  S LID     G+VE AF  L E  
Sbjct: 378 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMI 437

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N+GI   I++Y+S++     + N  K  +  + M   K+ P + T N LI      D++ 
Sbjct: 438 NKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMH 497

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              ++L+ M+   + P+ +TY++L+       +V+    +  +    G+ P+        
Sbjct: 498 DAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPD-------- 549

Query: 452 GMCSRRYEKARTLNEHVLSFNSGRP-QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 510
                RY     +N HV + NS    Q+ ++         R    AGT+  V + +    
Sbjct: 550 -----RYTYMSMINGHVTAGNSKEAFQLHDEMLQRGKEKRR---AAGTVQFVNIQNSAES 601

Query: 511 CLQLPYNADI 520
             Q+P +  +
Sbjct: 602 LKQMPMDLKV 611



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 165/370 (44%), Gaps = 3/370 (0%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P    F++L+     S+    AF+  RL+ +  +         L+   +++G      
Sbjct: 21  PTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAA 80

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           + +  + ++  E N +T   ++    KA +  K       M  + V PD V  N ++ A 
Sbjct: 81  DAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDAR 140

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G  + A  ++  M ++   + P  +T  +++K    +G  D+A EV+K +  + +  
Sbjct: 141 FRAGDAEAAMALVDSMVSK--GLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAP 198

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               +TI I    + G+ E A  +Y +M  +G+ PD V  S LI      GK++ A   L
Sbjct: 199 DVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYL 258

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E +  G+    + Y+ ++G    A     AL + + M      P V T N L+  LC  
Sbjct: 259 REMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKE 318

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +L     +L++M+  G+ P+  T++ L+     +  ++  L L        + P++V +
Sbjct: 319 RRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTY 378

Query: 448 KCII-GMCSR 456
             +I GMC +
Sbjct: 379 NTLIDGMCRQ 388



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 151/367 (41%), Gaps = 38/367 (10%)

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E+   ++ +   P    +  LI    ++ +  +AF A+ ++    V       NAL+ A 
Sbjct: 11  EIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAAL 70

Query: 208 GQSG----AVDRAFDVLAEMNAEVHP------------------------------VDPD 233
            ++G    A D A+ ++   N+EV+                               V PD
Sbjct: 71  SRAGWPHLAAD-AYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPD 129

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +T   ++ A   AG  + A  +   +    +K     Y   +    ++G W+ A  V+ 
Sbjct: 130 VVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFK 189

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +M   GV PD    + LI      G++E A +I +E +++GI   ++S+S L+G  +   
Sbjct: 190 EMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRG 249

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
               A+     M+   L P       +I   C    +   + V  +M   G  P+ +TY+
Sbjct: 250 KMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYN 309

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSF 471
            LL    ++  +     LL++ +E GV P+L  F  +I G C   + +KA  L + +L+ 
Sbjct: 310 TLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN- 368

Query: 472 NSGRPQI 478
              RP I
Sbjct: 369 QRLRPDI 375


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 137/289 (47%), Gaps = 2/289 (0%)

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
           +TY  +I  C    Q+ +A      MRS+ +  +   ++AL+  C ++  +D A DV  +
Sbjct: 1   YTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQ 60

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  E     P+ +T   L+   A+  +    R +   + +  I+     Y   I+ C+++
Sbjct: 61  MLEE--GCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKS 118

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G  E A  VY+ M   GV P     +ALI   G  G+VE A +I ++   +G    +I+Y
Sbjct: 119 GQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITY 178

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           SSL+ AC  A  W+ ALEL+  M     KP V T N+LI A   G    K  E+   M++
Sbjct: 179 SSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQT 238

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            G  P++ITY  L+ A ER       L    Q +  G  P+  +F  ++
Sbjct: 239 QGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 151/290 (52%), Gaps = 11/290 (3%)

Query: 30  HSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++Y  +I Q     ++   ++L+ +M  +G+ D +   ++   NVC     +  A   +K
Sbjct: 1   YTYTTMISQCGSHQQLRRALELVAEMRSRGI-DCNVHTYSALMNVCIKANELDLAQDVYK 59

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +     +P L T+N+L+ V AS + +    ++   +  +G++A+ + Y T+I+ C KSG
Sbjct: 60  QMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSG 119

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           + +   +V+ +M+ AG++P+  TY ALI    K GQV KA   +  M  +  + + + ++
Sbjct: 120 QPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYS 179

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +LI+AC ++G  + A ++ ++M+ E     P+ +T  +L+ AC++ G  ++A E+++ + 
Sbjct: 180 SLISACEKAGRWEMALELFSKMHKE--NCKPNVVTYNSLIAACSHGGHWEKASELFEQMQ 237

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
               K     Y   I    + G W  A   ++ M  +G  PD    ++L+
Sbjct: 238 TQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 2/235 (0%)

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   ++  C +  Q+ RA E+   +    I      Y+  +N C +  + + A  VY  M
Sbjct: 2   TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 61

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            ++G  P+ V  + LID      K      +       GI   + +Y++++ AC+ +   
Sbjct: 62  LEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQP 121

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           ++AL++YE M +  +KP+ +T  ALI+A     Q+ K +++  DM   G   N ITYS L
Sbjct: 122 EQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSL 181

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468
           + ACE+    E+ L L S+  ++   PN+V +  +I  CS    +EKA  L E +
Sbjct: 182 ISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQM 236


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 179/398 (44%), Gaps = 35/398 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N +++    S D+  A  +LR ++E  +KAD   Y+T+I +  + G +DA   +
Sbjct: 181 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 240

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   GI+ +V TY +L+ G  KAG+          M S+ + P+ + FN L+    +
Sbjct: 241 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 300

Query: 210 SGAVDRAFDVLAEMNAE-VHP--------------------------------VDPDHIT 236
            G +  A ++  EM    + P                                  PD +T
Sbjct: 301 EGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 360

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +L+K      +VD   +V++ I K  +      Y+I +    Q+G  + A  ++ +M 
Sbjct: 361 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 420

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNW 355
             GV+PD +    L+D     GK+E A EI ++ +   + +GI+ Y++++ G C   K  
Sbjct: 421 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK-V 479

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           + A  L+  +    +KP V T   +I+ LC    L +   +L  M+  G  PN  TY+ L
Sbjct: 480 EDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTL 539

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           + A  R  D+     L+ + K  G   +    K +I M
Sbjct: 540 IRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 577



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 172/406 (42%), Gaps = 43/406 (10%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           V  +RFF+     K       F K +        + T N++++       +  A+ VL  
Sbjct: 79  VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 138

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           V + G + D   + TLI      GKV     +   MV  G +P+V TY ++++G  ++G 
Sbjct: 139 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 198

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
            + A      M  +NVK D   ++ +I +  + G +D A  +  EM  E   +    +T 
Sbjct: 199 TSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM--ETKGIKSSVVTY 256

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            +L++    AG+                                   W     +  DM  
Sbjct: 257 NSLVRGLCKAGK-----------------------------------WNDGALLLKDMVS 281

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           + ++P+ +  + L+D     GK++ A E+ +E   +GIS  II+Y++LM          +
Sbjct: 282 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE 341

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A  + + M   K  P + T  +LI   C   ++   M+V  ++   GL  N +TYSIL+ 
Sbjct: 342 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 401

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 461
              +   +++   L  +    GV+P+++ +  ++ G+C   + EKA
Sbjct: 402 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKA 447



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 167/393 (42%), Gaps = 46/393 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R G  S  +DLL  ME + +      Y     ++C+    I  A   FK +     
Sbjct: 191 NGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCR-DGCIDAAISLFKEMETKGI 249

Query: 90  -PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             ++ T+N L+  +C + K ++GA  +  +V    +  +   +  L+    K GK+    
Sbjct: 250 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVFVKEGKLQEAN 308

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA- 206
           E++ EM+  GI PN+ TY  L+DG     ++++A     +M      PD V F +LI   
Sbjct: 309 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 368

Query: 207 -----------------------------------CGQSGAVDRAFDVLAEMNAEVHPVD 231
                                              C QSG +  A ++  EM +  H V 
Sbjct: 369 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC-QSGKIKLAEELFQEMVS--HGVL 425

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           PD +T G L+    + G++++A E+++ + K  +     +YT  I    + G  E A ++
Sbjct: 426 PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNL 485

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           +  +  KGV P+ +  + +I      G +  A  +L++ +  G +    +Y++L+ A   
Sbjct: 486 FCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 545

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
             +   + +L E MKS       S++  +I  L
Sbjct: 546 DGDLTASAKLIEEMKSCGFSADASSIKMVIDML 578



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 2/238 (0%)

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A  +  EM     P+ P  +       A A   Q +   +  K +    I        
Sbjct: 60  DDAIALFQEM-IRSRPL-PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 117

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I INC  +     FA SV   + K G  PD    + LI      GKV  A  ++      
Sbjct: 118 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 177

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G    +++Y+S++     + +   AL+L   M+   +K  V T + +I +LC    +   
Sbjct: 178 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 237

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + +  +M++ G+  + +TY+ L+    +      G +LL       ++PN++ F  ++
Sbjct: 238 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 295



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 6/152 (3%)

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
           E   S ++D      K + A  + QE         ++ +S    A +  K +   L+  +
Sbjct: 48  ERLRSGIVDI-----KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCK 102

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            ++   +   + T+N +I   C   +      VL  +  LG  P+T T++ L+     + 
Sbjct: 103 QLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEG 162

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            V   ++L+ +  E+G  P++V +  I+ G+C
Sbjct: 163 KVSEAVVLVDRMVENGCQPDVVTYNSIVNGIC 194


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/527 (23%), Positives = 218/527 (41%), Gaps = 89/527 (16%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  L +YN +I    R   + E I+L   M  KGL+     Y       C  +++ +   
Sbjct: 247 SPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKL 306

Query: 82  RFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              +++     P P   T+N L+       D E AF++   +   G++A+  ++ TL+  
Sbjct: 307 MLLEMIDVGLKPEPI--TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNG 364

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF-------------- 182
             K+GK++   E+  EM+  G+EP+  TY  LI+G  +   +A+AF              
Sbjct: 365 VCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPT 424

Query: 183 ------------------GAYGIMRS---KNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
                             G   I+R      +KP+ VV+  L+TA  + G V+ +  +L 
Sbjct: 425 VLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILE 484

Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
            M  +   + PD     +L+     A +++ AR     + +  ++     Y   I+  S+
Sbjct: 485 RMREQ--GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSK 542

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA------------------------ 317
            G+ E A   +++M   GV+P+    +ALI+  GH                         
Sbjct: 543 AGEMEIADRYFNEMLSCGVLPNVGIYTALIE--GHCKEGNVTEAFSVFRFILSRRVLQDV 600

Query: 318 -------------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
                        GK+  AF I  E + +G+     +Y+SL+       N  KA +L E 
Sbjct: 601 QTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEE 660

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M    + P + T N LI  LC   ++ +   +  D++  GL PN +TY+ ++    +  +
Sbjct: 661 MCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKN 720

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 469
                 LL +    GV P+  ++  I+  C +  ++EKA  L + +L
Sbjct: 721 PTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML 767



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 210/442 (47%), Gaps = 8/442 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + + G++ + ++++++M  KG+    + Y       C+ Q  +  AF     +     
Sbjct: 363 NGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQN-MARAFELLDEMKKRKL 421

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PT+ T++++++      + +G   +LR +   GLK +  +YTTL+T  AK G+V+    
Sbjct: 422 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 481

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M   GI P+V  Y +LI G  KA ++ +A      M  + ++P+   + A I    
Sbjct: 482 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYS 541

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G ++ A     EM +    V P+     AL++     G V  A  V++ I    +   
Sbjct: 542 KAGEMEIADRYFNEMLS--CGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQD 599

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            + Y++ I+  S+ G    A  ++ ++ +KG++P+    ++LI  +   G V+ A ++L+
Sbjct: 600 VQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLE 659

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   +GI+  I++Y+ L+     A   ++A  L++ ++   L P   T  A++   C   
Sbjct: 660 EMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSK 719

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
                 ++L +M   G+ P+   Y+++L  C +++  E  L L  +  E G    +    
Sbjct: 720 NPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNT 779

Query: 449 CIIGMC-SRRYEKARTLNEHVL 469
            I G C S + ++A  L E ++
Sbjct: 780 LIEGYCKSGKLQEANHLLEEMI 801



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 161/339 (47%), Gaps = 12/339 (3%)

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            +L+    K  KV+  ++VF  M    + P+V+TY  +I    K G V  A      M  
Sbjct: 184 NSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGE 243

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACAN 246
           K   P+ V +N +I    ++  +D A ++   M      VD    PD  T   L+     
Sbjct: 244 KGCSPNLVTYNVIIGGLCRARLLDEAIELKRSM------VDKGLVPDLYTYDILINGFCM 297

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
             +   A+ +   +    +K  P  Y   I+   + GD E A  + D+M   G+  + + 
Sbjct: 298 EKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLII 357

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            + L++    AGK+E A EI+QE   +G+     +YS L+      +N  +A EL + MK
Sbjct: 358 WNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMK 417

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
             KL PTV T + +I  LC    L  T  +L +M   GL PN + Y+ L+ A  ++  VE
Sbjct: 418 KRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVE 477

Query: 427 VGLMLLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKART 463
              M+L + +E G++P++  +   IIG C ++R E+ART
Sbjct: 478 ESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEART 516



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 212/459 (46%), Gaps = 57/459 (12%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVPNP 90
           ++GR+ E   +LE M  +G+L     Y++     CK+++ ++EA  +       +L PN 
Sbjct: 472 KEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKR-MEEARTYLMEMLERRLRPNA 530

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+   +   + + + E A +    +   G+  +  +YT LI    K G V   F VF
Sbjct: 531 --HTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVF 588

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             +++  +  +V TY  LI G ++ G++ +AFG +  ++ K + P+   +N+LI+   + 
Sbjct: 589 RFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQ 648

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------- 257
           G VD+A  +L EM   +  ++PD +T   L+     AG+++RA+ ++             
Sbjct: 649 GNVDKASQLLEEMC--IKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCV 706

Query: 258 -------------------KMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDM 295
                              +++ +  ++G P    +Y + +N C +   +E A  ++ +M
Sbjct: 707 TYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM 766

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            +KG     V  + LI+    +GK++ A  +L+E   +      ++Y+SL+     A   
Sbjct: 767 LEKG-FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMM 825

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +A  L+  M+   + PT  T  +L+    +   + +   +  +M + G+ P+ +TY ++
Sbjct: 826 GEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVM 885

Query: 416 ----------LVACERKDDVEVGLMLLSQAKEDGVIPNL 444
                     + AC+ KD++ V  M +S A  D +I  L
Sbjct: 886 IDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQAL 924



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/492 (22%), Positives = 217/492 (44%), Gaps = 38/492 (7%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDAMF 147
           +P L T+N+++     ++  + A ++ R + + GL  D   Y  LI   C +    +A  
Sbjct: 247 SPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKL 306

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +  EM++ G++P   TY ALIDG  + G + +AF     M +  ++ + +++N L+   
Sbjct: 307 MLL-EMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGV 365

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G +++A +++ EM  +   V+PD  T   L++       + RA E+   + K  +  
Sbjct: 366 CKAGKMEKALEIMQEMMEK--GVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAP 423

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   Y++ IN   + G+ +   ++  +M   G+ P+ V  + L+      G+VE +  IL
Sbjct: 424 TVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMIL 483

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +  + QGI   +  Y+SL+     AK  ++A      M   +L+P   T  A I      
Sbjct: 484 ERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKA 543

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++       ++M S G+ PN   Y+ L+                   KE  V     +F
Sbjct: 544 GEMEIADRYFNEMLSCGVLPNVGIYTALIEG---------------HCKEGNVTEAFSVF 588

Query: 448 KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 507
           + I+     +  +  ++  H LS N    +        A  ++ E    G +P     + 
Sbjct: 589 RFILSRRVLQDVQTYSVLIHGLSRNGKMHE--------AFGIFSELQEKGLLPNAFTYNS 640

Query: 508 VLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEA 561
           ++       N D   +L+E +   G++ D +  +    LIDG    GE + RA +L ++ 
Sbjct: 641 LISGSCKQGNVDKASQLLEEMCIKGINPDIVTYN---ILIDGLCKAGEIE-RAKNLFDDI 696

Query: 562 ASFGIVP-CVSF 572
              G+ P CV++
Sbjct: 697 EGRGLTPNCVTY 708



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 193/419 (46%), Gaps = 14/419 (3%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+Y   I    + G +        +M   G+L    +Y A     CK +  + EAF  F+
Sbjct: 531 HTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK-EGNVTEAFSVFR 589

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + +      + T+++L+   + +     AF +   +QE GL  +   Y +LI+   K G
Sbjct: 590 FILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQG 649

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            VD   ++  EM   GI P++ TY  LIDG  KAG++ +A   +  +  + + P+ V + 
Sbjct: 650 NVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYA 709

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           A++    +S     AF +L EM   +  V PD      ++  C    + ++A ++++ + 
Sbjct: 710 AMVDGYCKSKNPTAAFQLLEEM--LLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML 767

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +     T    T+    C ++G  + A  + ++M +K  IP+ V  ++LID    AG + 
Sbjct: 768 EKGFASTVSFNTLIEGYC-KSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMG 826

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +  E + + +     +Y+SL+    N  N  +   L+E M +  ++P   T   +I
Sbjct: 827 EAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMI 886

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDG 439
            A C    + +  ++  ++   G+  +   Y  L+ A C++++  EV L LL++  E G
Sbjct: 887 DAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEV-LKLLNEIGESG 944



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 187/421 (44%), Gaps = 12/421 (2%)

Query: 22   AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
            +  V + + +Y+ LI    R G++ E   +  +++ KGLL     Y++     CK Q  +
Sbjct: 593  SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCK-QGNV 651

Query: 78   KEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
             +A +  + +     NP + T+N+L+     + + E A  +   ++  GL  +C  Y  +
Sbjct: 652  DKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAM 711

Query: 134  ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
            +    KS    A F++  EM+  G+ P+   Y  +++ C K  +  KA   +  M  K  
Sbjct: 712  VDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF 771

Query: 194  KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
                V FN LI    +SG +  A  +L EM  +     P+H+T  +L+     AG +  A
Sbjct: 772  -ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEK--QFIPNHVTYTSLIDHNCKAGMMGEA 828

Query: 254  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            + ++  + + N+  T + YT  ++     G+     +++++M  KG+ PD++    +ID 
Sbjct: 829  KRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDA 888

Query: 314  AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
                G V  A ++  E   +G+ + + +Y +L+ A    + + + L+L   +     +  
Sbjct: 889  YCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLG 948

Query: 374  VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
            + T + +         + +  EVL  M   G   NT +   L+   +   + E    LL 
Sbjct: 949  LPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDGNQNGANSEDSDNLLK 1008

Query: 434  Q 434
            Q
Sbjct: 1009 Q 1009



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 155/339 (45%), Gaps = 26/339 (7%)

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDV-LAEMNAEVHPVDPDHITIGALMKACANA 247
           RS N  P+ V+F+ L+ +  + G +  A +V L   N E  P     ++  +L+      
Sbjct: 137 RSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRP---SLLSCNSLLGDLLKG 193

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            +V+   +V+  +  + +   P+VYT    I+   + G+ + A  V  +M +KG  P+ V
Sbjct: 194 NKVELFWKVFDGMCAHKV--LPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLV 251

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 364
             + +I     A  ++ A E+ +   ++G+   + +Y  L+ G C   ++ +  L L E 
Sbjct: 252 TYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLE- 310

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M  + LKP   T NALI        + +   +  +M + G+  N I ++ LL    +   
Sbjct: 311 MIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGK 370

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-----SRRYE-----KARTLNEHVLSFN- 472
           +E  L ++ +  E GV P+   +  +I G C     +R +E     K R L   VL+++ 
Sbjct: 371 MEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSV 430

Query: 473 --SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
             +G  +  N   + A++  RE ++ G  P   V + ++
Sbjct: 431 IINGLCRCGNLQGTNAIL--REMVMNGLKPNAVVYTTLM 467


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 188/410 (45%), Gaps = 4/410 (0%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L +  RI+E   ++  M  +G    D  Y      +CK  + +  A   F  +P PT   
Sbjct: 291 LCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGR-VDAAKDLFYRIPKPTSVI 349

Query: 95  FNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           FN L+    +    + A  VL  +V   G+  D   Y +LI    K G V    EV  +M
Sbjct: 350 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDM 409

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            N G +PNV++Y  L+DG  K G++ +A+     M +  +KP+ V FN LI+A  +   +
Sbjct: 410 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRI 469

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++  EM  +     PD  T  +L+       ++  A  + + +    +      Y 
Sbjct: 470 PEAVEIFREMPRK--GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 527

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             IN   + G+ + A  + ++M  +G + DE+  ++LI     AG+V+ A  + ++    
Sbjct: 528 TLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 587

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+    IS + L+     +   ++A+E  + M      P + T N+LI  LC   ++   
Sbjct: 588 GLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG 647

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           + +   +++ G+ P+T+TY+ L+    +   V    +LL +  EDG +PN
Sbjct: 648 LTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 697



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 179/383 (46%), Gaps = 9/383 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PTL TF ++M    +  + + A  VLR + + G   +  +Y TLI + +K  +V+   ++
Sbjct: 209 PTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQL 268

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G  P+  T+  +I G  K  ++ +A      M  +   PD + +  L+    +
Sbjct: 269 LEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCK 328

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGT 268
            G VD A D+   +        P  +    L+      G++D A+ V   M+  Y I   
Sbjct: 329 IGRVDAAKDLFYRIPK------PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD 382

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I    + G    A  V  DM  KG  P+    + L+D     GK++ A+ +L 
Sbjct: 383 VCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLN 442

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E    G+    + ++ L+ A        +A+E++  M     KP V T N+LI+ LC+ D
Sbjct: 443 EMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVD 502

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++   + +L DM S G+  NT+TY+ L+ A  R+ +++    L+++    G + + + + 
Sbjct: 503 EIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYN 562

Query: 449 CII-GMC-SRRYEKARTLNEHVL 469
            +I G+C +   +KAR+L E +L
Sbjct: 563 SLIKGLCRAGEVDKARSLFEKML 585



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 154/358 (43%), Gaps = 41/358 (11%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF++M++  I P + T+G ++       +V  A      M      P+ V++  LI +  
Sbjct: 198 VFYDMLSRKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLS 257

Query: 209 QSGAVDRAFDVLAEM-------NAE--------------------------VHPVDPDHI 235
           +   V+ A  +L EM       +AE                          +    PD I
Sbjct: 258 KCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDI 317

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T G LM      G+VD A++++  I     K T  ++   I+     G  + A +V  DM
Sbjct: 318 TYGYLMNGLCKIGRVDAAKDLFYRIP----KPTSVIFNTLIHGFVTHGRLDDAKAVLSDM 373

Query: 296 -TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
            T  G++PD    ++LI      G V  A E+L++ +N+G    + SY+ L+        
Sbjct: 374 VTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGK 433

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             +A  L   M +  LKP     N LI+A C   ++P+ +E+  +M   G  P+  T++ 
Sbjct: 434 IDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNS 493

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTL-NEHVL 469
           L+      D+++  L LL     +GV+ N V +  +I    RR E  +AR L NE V 
Sbjct: 494 LISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 551



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-VFLSALIDF--AGHAGKVEAAFEI 326
           +VY + I      G+++    +   M  +G++  E +F+S + D+  AG  G+      +
Sbjct: 106 DVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTT---RL 162

Query: 327 LQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + E +N         SY+ ++    +    + A  ++  M S K+ PT+ T   ++ ALC
Sbjct: 163 MLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALC 222

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             +++   + VL DM   G  PN++ Y  L+ +  + + V   L LL +    G +P+  
Sbjct: 223 AVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAE 282

Query: 446 MFK-CIIGMC--SRRYEKARTLNEHVL 469
            F   I+G+C   R  E A+ +N  ++
Sbjct: 283 TFNDVILGLCKFDRINEAAKMVNRMLI 309



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVY 257
           V+  LI   G +G       +L +M  E   V  + + I ++M+    AG   +  R + 
Sbjct: 107 VYQVLIGKLGSNGEFKTIDRLLMQMKDE-GIVFKESLFI-SIMRDYDKAGFPGQTTRLML 164

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           +M + Y+ + T + Y + +         + A +V+ DM  + + P       ++      
Sbjct: 165 EMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAV 224

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            +V++A  +L++    G     + Y +L+ + S      +AL+L E M  +   P   T 
Sbjct: 225 NEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 284

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           N +I  LC  D++ +  ++++ M   G  P+ ITY  L+
Sbjct: 285 NDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLM 323



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 36/196 (18%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+G I E   L+ +M  +G L  +  Y++    +C++ +  K    F K+
Sbjct: 525 TYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKM 584

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           + +                                GL         LI    +SG V+  
Sbjct: 585 LRD--------------------------------GLVPSSISCNILINGLCRSGMVEEA 612

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E   EMV  G  P++ T+ +LI+G  +AG++      +  ++++ + PD V +N L++ 
Sbjct: 613 VEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSW 672

Query: 207 CGQSGAVDRAFDVLAE 222
             + G V  A  +L E
Sbjct: 673 LCKGGFVYDACLLLDE 688



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 9/147 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G + +   L E M R GL+      +     +C+S   ++EA  F K 
Sbjct: 560 TYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRS-GMVEEAVEFQKE 618

Query: 87  V----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + TFN L++    +   E    + R +Q  G+  D   Y TL++   K G 
Sbjct: 619 MVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGF 678

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALI 169
           V     +  E +  G  PN  T+  L+
Sbjct: 679 VYDACLLLDEGIEDGFVPNDRTWSILL 705


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 205/446 (45%), Gaps = 16/446 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNM 97
           G +   ++LLE+M+  G    D   H        +   +  A    + +  +P + T+  
Sbjct: 4   GDLHAALELLEEMKSAGFAP-DAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTA 62

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L++  A +K  E A ++L  ++E G   +   Y  L+    K   V A  +V  +M+  G
Sbjct: 63  LIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG 122

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
             PNV T+ +L+DG  K G V  A    GIM +K ++P+ V ++ALI    +S     A 
Sbjct: 123 FAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAK 182

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VYTI 274
           +VL EM A    V PD  T  AL+     A   D+  E  +M+ +    G TP+  VY+ 
Sbjct: 183 EVLEEMKA--SGVTPDAFTYSALIHGLCKA---DKIEEAEQMLRRMAGSGCTPDVVVYSS 237

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   ++G    A     +M K+   PD V  + +ID     GK+  A  IL + +  G
Sbjct: 238 IIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESG 297

Query: 335 -ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            +   +++YS+++     +    +A +L + M      P V T   +I  LC   +L + 
Sbjct: 298 DVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEA 357

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
             +L  MK  G  PN +TY+ L+    +   V+    ++ + +  G  PNLV +  ++ G
Sbjct: 358 EYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNG 417

Query: 453 MC-SRRYEKARTLNEHVLSFNSGRPQ 477
           +C S R ++A+ L   V     GR +
Sbjct: 418 LCVSGRIKEAQQL---VQRMKDGRAE 440



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 187/418 (44%), Gaps = 20/418 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEA 80
           +Y  LI    R  ++ E + LLE+M  +G       Y+     +CK      +Q  +K  
Sbjct: 59  TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVK-- 116

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +  +    P + TFN L+       + + A ++L ++   G++ +   Y+ LI    KS
Sbjct: 117 -KMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS 175

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            K     EV  EM  +G+ P+  TY ALI G  KA ++ +A      M      PD VV+
Sbjct: 176 QKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 235

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +++I A  +SG +  A   L EM  +     PD +T   ++      G++  A+ +   +
Sbjct: 236 SSIIHAFCKSGKLLEAQKTLQEMRKQRK--SPDVVTYNTVIDGLCKLGKIAEAQVILDQM 293

Query: 261 HKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +      P+V  Y+  IN   ++     A  + D M K G  PD V  + +ID     G
Sbjct: 294 QESG-DVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCG 352

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           ++E A  +LQ  K  G +  +++Y++L+     A+   +A  + E M++    P + T N
Sbjct: 353 RLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYN 412

Query: 379 ALITALCDGDQLPKTMEVLSDMKS--LGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            ++  LC   ++ +  +++  MK       P+  TY  ++ A    D V+    LL Q
Sbjct: 413 TMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQ 470



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 139/316 (43%), Gaps = 41/316 (12%)

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +G + A  E+  EM +AG  P+  T+  +I   A AG +    GA   +RS    P+ V 
Sbjct: 3   AGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLD---GAMDHLRSMGCDPNVVT 59

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           + ALI A  ++  ++ A  +L EM     P  P+ +T   L+ A      V  A++V K 
Sbjct: 60  YTALIAAFARAKKLEEAMKLLEEMRERGCP--PNLVTYNVLVDALCKLSMVGAAQDVVK- 116

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
                                              M + G  P+ +  ++L+D     G 
Sbjct: 117 ----------------------------------KMIEGGFAPNVMTFNSLVDGFCKRGN 142

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           V+ A ++L     +G+   +++YS+L+     ++ + +A E+ E MK+  + P   T +A
Sbjct: 143 VDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSA 202

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI  LC  D++ +  ++L  M   G  P+ + YS ++ A  +   +      L + ++  
Sbjct: 203 LIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQR 262

Query: 440 VIPNLVMFKCII-GMC 454
             P++V +  +I G+C
Sbjct: 263 KSPDVVTYNTVIDGLC 278



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 126/262 (48%), Gaps = 12/262 (4%)

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +  A ++L EM +      PD  T   ++ A ANAG +D A     M H  ++   P
Sbjct: 3   AGDLHAALELLEEMKSAGFA--PDAFTHTPIITAMANAGDLDGA-----MDHLRSMGCDP 55

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
            V  YT  I   ++    E A  + ++M ++G  P+ V  + L+D       V AA +++
Sbjct: 56  NVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVV 115

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++    G +  +++++SL+       N   A +L   M +  ++P V T +ALI  LC  
Sbjct: 116 KKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS 175

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +  +  EVL +MK+ G+ P+  TYS L+    + D +E    +L +    G  P++V++
Sbjct: 176 QKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 235

Query: 448 KCII-GMC--SRRYEKARTLNE 466
             II   C   +  E  +TL E
Sbjct: 236 SSIIHAFCKSGKLLEAQKTLQE 257



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 82/151 (54%), Gaps = 5/151 (3%)

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
           +AG + AA E+L+E K+ G +    +++ ++ A +NA +   A+   +H++S+   P V 
Sbjct: 2   NAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAM---DHLRSMGCDPNVV 58

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T  ALI A     +L + M++L +M+  G  PN +TY++L+ A  +   V     ++ + 
Sbjct: 59  TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 118

Query: 436 KEDGVIPNLVMFKCII-GMCSR-RYEKARTL 464
            E G  PN++ F  ++ G C R   + AR L
Sbjct: 119 IEGGFAPNVMTFNSLVDGFCKRGNVDDARKL 149



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 105/240 (43%), Gaps = 33/240 (13%)

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
           NA +   ALEL E MKS    P   T   +ITA+ +   L   M+ L   +S+G  PN +
Sbjct: 2   NAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHL---RSMGCDPNVV 58

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSRRYEKARTL 464
           TY+ L+ A  R   +E  + LL + +E G  PNLV +       C + M     +  + +
Sbjct: 59  TYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 118

Query: 465 NE-----HVLSFNS------GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCL 512
            E     +V++FNS       R  +++    L +MV +     G  P V   S ++ G  
Sbjct: 119 IEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAK-----GMRPNVVTYSALIDGLC 173

Query: 513 QLPYNADIRERLVE--NLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 568
           +     + +E L E    GV+ DA   S   +LI G  + D    A  +L   A  G  P
Sbjct: 174 KSQKFLEAKEVLEEMKASGVTPDAFTYS---ALIHGLCKADKIEEAEQMLRRMAGSGCTP 230



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 101/240 (42%), Gaps = 37/240 (15%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEA 80
           S  + +YN +I    + G+I+E   +L+ M+  G +  D V ++   N +CKS       
Sbjct: 264 SPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKS------- 316

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                          +ML+           A ++L  + +AG   D   YTT+I    K 
Sbjct: 317 ---------------DMLVE----------AQKLLDRMCKAGCNPDVVTYTTIIDGLCKC 351

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+++    +   M  AG  PNV TY  LI G  KA +V +A      MR+    P+ V +
Sbjct: 352 GRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTY 411

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N ++     SG +  A  ++  M        PD  T   ++ A  ++  V  A ++ + +
Sbjct: 412 NTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471


>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
           10D]
          Length = 805

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 171/364 (46%), Gaps = 3/364 (0%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
            N ++S    S  +  A  + R+V+  G ++ D   Y+ LI+   K G      E+FH+M
Sbjct: 364 LNKILSALYKSGRAADALSLCRIVEREGHIEIDVASYSILISCLGKCGASAQAIEMFHKM 423

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGA 212
           +  G+ PN  T+ AL           +A   + ++R+      + VV+NA++   G++G 
Sbjct: 424 IRNGVAPNAFTFSALFGALTDGAFFDQAMRLFQMIRASYPNELNVVVYNAVLKYVGRAGR 483

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A D+L +M    + V PD +T G ++  CA    V  A  V   + K  ++     Y
Sbjct: 484 IDAALDLLGQMEQNRN-VQPDIVTYGTILDICAKKQDVSLAYAVLDRMRKRGMRPNNFCY 542

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+ C++ G  + A S++  +  +G+  D    +AL+     A  VE AF+  +E ++
Sbjct: 543 ASLIDACARAGLPDQAESLFRQLRAEGLEYDLFICNALLGAFARAKMVERAFQAFEEMRS 602

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+    I++++L+ A + A+ + KA + +E MK   +    +T NALI A         
Sbjct: 603 AGVRGDRITFNTLITAAARAREFDKAWKAFETMKKSNISADATTYNALIDACSKSGMTEL 662

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
              + ++M+   L P   T++ L+ AC +  D+     +L      GV P+      ++ 
Sbjct: 663 AFALFNEMRQAHLQPTIFTFNALIGACTKLQDMRRATQVLMLMHGFGVYPDTFTLNILLT 722

Query: 453 MCSR 456
            C+R
Sbjct: 723 ACAR 726



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 178/360 (49%), Gaps = 18/360 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L + GR ++ + L   +ER+G +++D   ++   +      A  +A   F K++ N   P
Sbjct: 371 LYKSGRAADALSLCRIVEREGHIEIDVASYSILISCLGKCGASAQAIEMFHKMIRNGVAP 430

Query: 91  TLSTFNMLMSVCASSKDSEGAF--QVLRLVQEAGLKADCKL----YTTLITTCAKSGKVD 144
              TF+ L         ++GAF  Q +RL Q        +L    Y  ++    ++G++D
Sbjct: 431 NAFTFSALFGAL-----TDGAFFDQAMRLFQMIRASYPNELNVVVYNAVLKYVGRAGRID 485

Query: 145 AMFEVFHEM-VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           A  ++  +M  N  ++P++ TYG ++D CAK   V+ A+     MR + ++P+   + +L
Sbjct: 486 AALDLLGQMEQNRNVQPDIVTYGTILDICAKKQDVSLAYAVLDRMRKRGMRPNNFCYASL 545

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I AC ++G  D+A  +  ++ AE   ++ D     AL+ A A A  V+RA + ++ +   
Sbjct: 546 IDACARAGLPDQAESLFRQLRAE--GLEYDLFICNALLGAFARAKMVERAFQAFEEMRSA 603

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            ++G    +   I   ++  +++ A   ++ M K  +  D    +ALID    +G  E A
Sbjct: 604 GVRGDRITFNTLITAAARAREFDKAWKAFETMKKSNISADATTYNALIDACSKSGMTELA 663

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           F +  E +   +   I ++++L+GAC+  ++ ++A ++   M    + P   T+N L+TA
Sbjct: 664 FALFNEMRQAHLQPTIFTFNALIGACTKLQDMRRATQVLMLMHGFGVYPDTFTLNILLTA 723



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 138/292 (47%), Gaps = 14/292 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  ++ +CA  +D   A+ VL  +++ G++ +   Y +LI  CA++G  D    +
Sbjct: 502 PDIVTYGTILDICAKKQDVSLAYAVLDRMRKRGMRPNNFCYASLIDACARAGLPDQAESL 561

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F ++   G+E ++    AL+   A+A  V +AF A+  MRS  V+ DR+ FN LITA  +
Sbjct: 562 FRQLRAEGLEYDLFICNALLGAFARAKMVERAFQAFEEMRSAGVRGDRITFNTLITAAAR 621

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +   D+A+     M  +   +  D  T  AL+ AC+ +G  + A  ++  + + +++ T 
Sbjct: 622 AREFDKAWKAFETM--KKSNISADATTYNALIDACSKSGMTELAFALFNEMRQAHLQPTI 679

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             +   I  C++  D   A  V   M   GV PD   L+ L+         + A  +++E
Sbjct: 680 FTFNALIGACTKLQDMRRATQVLMLMHGFGVYPDTFTLNILLTACARNEDFDYAISLVRE 739

Query: 330 AK-NQGISVGIISYSSLMGACSNAKNWQK-----------ALELYEHMKSIK 369
            + N  + +  +  S +   C  A + Q             LE YE ++ ++
Sbjct: 740 FETNYRVRLDRLGSSIVTNLCIKACDSQSRDRCLRLLEAAVLEGYETLREVR 791


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 194/409 (47%), Gaps = 7/409 (1%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVC 102
           +L +M + GL   + V  +   N   S+  I +A + F    K+   P + T++ +++  
Sbjct: 34  VLGNMFKLGL-QPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGL 92

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
                +  A Q+L+ ++E G K +  +Y+T+I +  K   +    E   EMVN GI PNV
Sbjct: 93  CKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNV 152

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY +++ G    G+  +A   +  M  +NV PD V FN L+    + G +  A  V   
Sbjct: 153 VTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFET 212

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  +   V+P+  T  ALM    +  Q+D A++++ ++ +     +   Y I I    ++
Sbjct: 213 MIEK--GVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKS 270

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G  + A  +  +M+ K + PD V  S L+      G+ + A ++L+E ++ G+   +++Y
Sbjct: 271 GRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTY 330

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           S ++       +  +A EL + M+  K++P +     LI  +C+  +L    E+ S++  
Sbjct: 331 SIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFV 390

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            G+ P+ +TY++++    +         L       G +PN   +  II
Sbjct: 391 KGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVII 439



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 221/469 (47%), Gaps = 33/469 (7%)

Query: 90  PTLSTFNMLMS-VCASSKDS-EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P + T  +L++  C S+ D    AF VL  + + GL+ +   ++TL+   +   K+    
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV 67

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++F EMV  G EP+V TY  +I+G  K G    A      M  K  KP+ VV++ +I + 
Sbjct: 68  KLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSL 127

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +   +  A + L+EM      + P+ +T  +++    N G+ + A  ++K + + N+  
Sbjct: 128 CKDKLITEAMEFLSEMVN--RGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMP 185

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               + I ++  S+ G    A  V++ M +KGV P+    +AL+D      +++ A ++ 
Sbjct: 186 DTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLF 245

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                +G +  + SY+ L+     +    +A  L   M    L P   T + L+   C  
Sbjct: 246 NIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQD 305

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +     ++L +M+S GL P+ +TYSI+L    ++  ++    LL   +E  + PN+ ++
Sbjct: 306 GRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIY 365

Query: 448 KCII-GMCS-RRYEKARTLNEHVLSFNSG-RPQI-----------ENKWTSLALMVYREA 493
             +I GMC+  + E AR L  ++  F  G +P +           +   ++ A  ++R+ 
Sbjct: 366 TILIQGMCNFGKLEAARELFSNL--FVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDM 423

Query: 494 IVAGTIP---TVEVVSKVLGCLQLPYNADIRE--RLVENL---GVSADA 534
            V G +P   T  V+  + G L+   N D     RL+E +   G SAD+
Sbjct: 424 AVHGCLPNSCTYNVI--IQGFLR---NGDTSNAGRLIEEMVGRGFSADS 467



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 187/441 (42%), Gaps = 44/441 (9%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           Y  DV       N L + G  +  I LL+ ME KG      VY     ++CK  K I EA
Sbjct: 78  YEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCK-DKLITEA 136

Query: 81  FRFFKLVPN----PTLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
             F   + N    P + T+ ++L   C   + +E A  + + + E  +  D   +  L+ 
Sbjct: 137 MEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNE-ATSLFKQMVERNVMPDTVTFNILVD 195

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
             +K G +     VF  M+  G+EPNV+TY AL+DG     Q+ +A   + IM  K   P
Sbjct: 196 GLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAP 255

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
               +N LI    +SG +D A  +LAEM+ +   + PD +T   LMK     G+   A++
Sbjct: 256 SVRSYNILIKGHCKSGRIDEAKGLLAEMSHKA--LTPDTVTYSTLMKGFCQDGRPQDAQK 313

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + + +  Y                                   G++PD +  S ++D   
Sbjct: 314 LLEEMRSY-----------------------------------GLLPDLMTYSIVLDGLC 338

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G ++ AFE+L+  +   I   I  Y+ L+    N    + A EL+ ++    ++P V 
Sbjct: 339 KQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVV 398

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T   +I+ L  G    +  E+  DM   G  PN+ TY++++    R  D      L+ + 
Sbjct: 399 TYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEM 458

Query: 436 KEDGVIPNLVMFKCIIGMCSR 456
              G   +   F+ +  + SR
Sbjct: 459 VGRGFSADSSTFQMLSDLESR 479


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 185/408 (45%), Gaps = 22/408 (5%)

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           AG   +  +Y++LI    +SGK+    E+F E +    +PN+  Y A+ID C+K G    
Sbjct: 149 AGFGNNVFVYSSLICAYGRSGKLAKAVEIF-EAMKVVCKPNLVVYNAVIDACSKGGDYPT 207

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A   +  M  + + PDR+ FN LI+A G++   +    + AEM  E   +  D +T   L
Sbjct: 208 ALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEM--EERGIARDDVTYNTL 265

Query: 241 MKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           +      GQ+     + + + K + I+ +   Y+  I+  ++ G    A +++ +M  + 
Sbjct: 266 IATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQN 325

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           V PD +  + ++D     G  + A  I +  +  G +  I++Y++L+ +      +++A+
Sbjct: 326 VEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAM 385

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            L E MK     P + T +ALI A C        M +  D+K  GL P+ + YS L+  C
Sbjct: 386 SLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGC 445

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR---- 475
            +    +  L LL +  ++G+ PN++ +  ++    R+    R     +  F   R    
Sbjct: 446 CKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKTFPKLRFFLLPRVTML 505

Query: 476 --PQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVL 509
             P +++   SL            A  V+RE    G  P V   S +L
Sbjct: 506 LKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSIL 553



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 170/391 (43%), Gaps = 10/391 (2%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           K  KA+ E F   K+V  P L  +N ++  C+   D   A ++ R + E G+  D   + 
Sbjct: 170 KLAKAV-EIFEAMKVVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFN 228

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM-RS 190
           TLI+   ++ + +    +F EM   GI  +  TY  LI    + GQ+         M +S
Sbjct: 229 TLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKS 288

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
             ++P  + ++ +I    + G    A  +  EM  +   V+PD I    ++   A  G  
Sbjct: 289 SGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQ--NVEPDGICYNTMVDIHARLGNF 346

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D A  + + + +         Y   ++   + G +  A S+ ++M ++G  P+ +  SAL
Sbjct: 347 DEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSAL 406

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID     G    A  + Q+ K  G+   ++ YS+L+  C    +  +AL L E M    +
Sbjct: 407 IDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGI 466

Query: 371 KPTVSTMNALITA-----LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD- 424
           +P V T N+L+ A     L      PK    L    ++ L P+       LV  ++K   
Sbjct: 467 RPNVITYNSLLDAYGRQCLMVRKTFPKLRFFLLPRVTMLLKPSMQDDQQSLVDPKQKQAL 526

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           V     +  +  ++GV PN+V F  I+  CS
Sbjct: 527 VLAAARVFREMAKNGVKPNVVTFSSILNACS 557



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 162/379 (42%), Gaps = 30/379 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G++     L+E M +   ++   + ++   +         EA   F+ 
Sbjct: 261 TYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQE 320

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + N    P    +N ++ + A   + + A  + R ++EAG   D   Y  L+ +  K GK
Sbjct: 321 MRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGK 380

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                 +  EM   G  PN+ TY ALID   K G    A   +  ++   ++PD V+++ 
Sbjct: 381 FREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYST 440

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L+  C ++G+ D A  +L EM    + + P+ IT  +L+ A     Q    R+ +  +  
Sbjct: 441 LVDGCCKNGSPDEALALLEEMAD--NGIRPNVITYNSLLDAYGR--QCLMVRKTFPKLRF 496

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEF------------ACSVYDDMTKKGVIPDEVFLSAL 310
           + +   P V T+ +    Q                  A  V+ +M K GV P+ V  S++
Sbjct: 497 FLL---PRV-TMLLKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSI 552

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ++   H   VE A  +L+  +     V  +++  LMG     + W+ A  L+  + ++  
Sbjct: 553 LNACSHCASVEDASNLLEAMRVFDGRVYGVTHGLLMGF--RIRVWRDAETLFNELTTLGH 610

Query: 371 KPTVSTMNALITALCDGDQ 389
              V+  NAL   L   +Q
Sbjct: 611 NTAVAFYNALTDVLWHFEQ 629



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 159/348 (45%), Gaps = 31/348 (8%)

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPE-VYTIAINCCSQTGDW 285
           H + PD +    +++   ++GQ ++  + +  M+ + N++   + V +  I+   + G  
Sbjct: 79  HLLGPDDLPF--IVRELGHSGQWEKVVKSFDWMVLQQNLRSQWDKVTSTIISSLGRLGRS 136

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           ++A  ++D     G   +    S+LI   G +GK+  A EI  EA        ++ Y+++
Sbjct: 137 DWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIF-EAMKVVCKPNLVVYNAV 195

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           + ACS   ++  AL ++  M    + P   T N LI+A    ++  +   + ++M+  G+
Sbjct: 196 IDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI 255

Query: 406 CPNTITYSILLVACERKDDVEVGLMLL-SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
             + +TY+ L+    R   + +G  L+ + AK  G+ P+++ +  +I      Y K    
Sbjct: 256 ARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMID----GYAKLGLA 311

Query: 465 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL 524
           +E +  F   R Q           V  + I   T+  V++ ++ LG     ++  IR R 
Sbjct: 312 HEAIALFQEMRNQ----------NVEPDGICYNTM--VDIHAR-LGNFDEAHS--IR-RA 355

Query: 525 VENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVPCV 570
           +E  G + D +  +   +L+D +G+      A SLLEE    G  P +
Sbjct: 356 MEEAGFAKDIVTYN---ALLDSYGKQGKFREAMSLLEEMKQRGASPNI 400


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 196/419 (46%), Gaps = 13/419 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RFFKLVPNPTLS 93
           +  R    I L E M+  G+  +    +     VC S +  + +    +  KL   P L 
Sbjct: 95  KMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLV 154

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           TF  L++        E A  +   +   G K +   YTTLI    K+  ++   E+F++M
Sbjct: 155 TFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQM 214

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G  PNV TY AL+ G  + G+   A      M  + ++P+ + F ALI A  + G +
Sbjct: 215 GTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKL 274

Query: 214 DRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             A   ++V+ +M+     V PD  T G+L+      G +D AR+++ ++ +        
Sbjct: 275 MEAKELYNVMIQMS-----VYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEV 329

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           +YT  I+   ++   E    ++ +M++KGV+ + +  + LI      G+ + A E+  + 
Sbjct: 330 IYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQM 389

Query: 331 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            ++     I +Y+ L+ G C N K  +KAL ++E+M+  ++   + T   +I  +C   +
Sbjct: 390 SSRRAPPDIRTYNVLLDGLCCNGK-VEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK 448

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +    ++   + S G+ PN ITY+ ++    R+  +     L  + KEDG +PN  ++K
Sbjct: 449 VEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 174/371 (46%), Gaps = 9/371 (2%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P L T N++M  VC SS+    +  + ++++  G + D   +T+L+       +++    
Sbjct: 116 PLLCTCNIVMHCVCLSSQPCRASCFLGKMMK-LGFEPDLVTFTSLLNGYCHWNRIEDAIA 174

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F +++  G +PNV TY  LI    K   +  A   +  M +   +P+ V +NAL+T   
Sbjct: 175 LFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLC 234

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G    A  +L +M      ++P+ IT  AL+ A    G++  A+E+Y ++ + ++   
Sbjct: 235 EIGRWGDAAWLLRDMMKR--RIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSV--Y 290

Query: 269 PEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+V+T    IN     G  + A  ++  M + G  P+EV  + LI     + +VE   +I
Sbjct: 291 PDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKI 350

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             E   +G+    I+Y+ L+           A E++  M S +  P + T N L+  LC 
Sbjct: 351 FYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCC 410

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             ++ K + +   M+   +  N +TY+I++    +   VE    L       G+ PN++ 
Sbjct: 411 NGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVIT 470

Query: 447 FKCII-GMCSR 456
           +  +I G C R
Sbjct: 471 YTTMISGFCRR 481



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 134/312 (42%), Gaps = 4/312 (1%)

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           DA+ ++F  MV++   P++  +  L+   AK  +       +  M+   + P     N +
Sbjct: 66  DAL-DLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIV 124

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +     S    RA   L +M       +PD +T  +L+    +  +++ A  ++  I   
Sbjct: 125 MHCVCLSSQPCRASCFLGKMMKL--GFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM 182

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             K     YT  I C  +      A  +++ M   G  P+ V  +AL+      G+   A
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             +L++   + I   +I++++L+ A        +A ELY  M  + + P V T  +LI  
Sbjct: 243 AWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLING 302

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC    L +  ++   M+  G  PN + Y+ L+    +   VE G+ +  +  + GV+ N
Sbjct: 303 LCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVAN 362

Query: 444 LVMFKCII-GMC 454
            + +  +I G C
Sbjct: 363 TITYTVLIQGYC 374


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 179/398 (44%), Gaps = 35/398 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N +++    S D+  A  +LR ++E  +KAD   Y+T+I +  + G +DA   +
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   GI+ +V TY +L+ G  KAG+          M S+ + P+ + FN L+    +
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310

Query: 210 SGAVDRAFDVLAEMNAE-VHP--------------------------------VDPDHIT 236
            G +  A ++  EM    + P                                  PD +T
Sbjct: 311 EGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 370

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +L+K      +VD   +V++ I K  +      Y+I +    Q+G  + A  ++ +M 
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNW 355
             GV+PD +    L+D     GK+E A EI ++ +   + +GI+ Y++++ G C   K  
Sbjct: 431 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK-V 489

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           + A  L+  +    +KP V T   +I+ LC    L +   +L  M+  G  PN  TY+ L
Sbjct: 490 EDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTL 549

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           + A  R  D+     L+ + K  G   +    K +I M
Sbjct: 550 IRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 587



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 175/413 (42%), Gaps = 43/413 (10%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           V  +RFF+     K       F K +        + T N++++       +  A+ VL  
Sbjct: 89  VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 148

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           V + G + D   + TLI      GKV     +   MV  G +P+V TY ++++G  ++G 
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 208

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
            + A      M  +NVK D   ++ +I +  + G +D A  +  EM  E   +    +T 
Sbjct: 209 TSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM--ETKGIKSSVVTY 266

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            +L++    AG+                                   W     +  DM  
Sbjct: 267 NSLVRGLCKAGK-----------------------------------WNDGALLLKDMVS 291

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           + ++P+ +  + L+D     GK++ A E+ +E   +GIS  II+Y++LM          +
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE 351

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A  + + M   K  P + T  +LI   C   ++   M+V  ++   GL  N +TYSIL+ 
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
              +   +++   L  +    GV+P+++ +  ++ G+C   + EKA  + E +
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 167/393 (42%), Gaps = 46/393 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R G  S  +DLL  ME + +      Y     ++C+    I  A   FK +     
Sbjct: 201 NGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCR-DGCIDAAISLFKEMETKGI 259

Query: 90  -PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             ++ T+N L+  +C + K ++GA  +  +V    +  +   +  L+    K GK+    
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVFVKEGKLQEAN 318

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA- 206
           E++ EM+  GI PN+ TY  L+DG     ++++A     +M      PD V F +LI   
Sbjct: 319 ELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378

Query: 207 -----------------------------------CGQSGAVDRAFDVLAEMNAEVHPVD 231
                                              C QSG +  A ++  EM +  H V 
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC-QSGKIKLAEELFQEMVS--HGVL 435

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           PD +T G L+    + G++++A E+++ + K  +     +YT  I    + G  E A ++
Sbjct: 436 PDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNL 495

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           +  +  KGV P+ +  + +I      G +  A  +L++ +  G +    +Y++L+ A   
Sbjct: 496 FCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLR 555

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
             +   + +L E MKS       S++  +I  L
Sbjct: 556 DGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 2/238 (0%)

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A  +  EM     P+ P  +       A A   Q +   +  K +    I        
Sbjct: 70  DDAIALFQEM-IRSRPL-PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 127

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I INC  +     FA SV   + K G  PD    + LI      GKV  A  ++      
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G    +++Y+S++     + +   AL+L   M+   +K  V T + +I +LC    +   
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + +  +M++ G+  + +TY+ L+    +      G +LL       ++PN++ F  ++
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           +  ++   V   E   S ++D      K + A  + QE         ++ +S    A + 
Sbjct: 46  FSSISNGNVCFRERLRSGIVDI-----KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIAR 100

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
            K +   L+  + ++   +   + T+N +I   C   +      VL  +  LG  P+T T
Sbjct: 101 TKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTT 160

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           ++ L+     +  V   ++L+ +  E+G  P++V +  I+ G+C
Sbjct: 161 FNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGIC 204


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 179/358 (50%), Gaps = 10/358 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T+ ++++      D++ AF +L  +++  L+    +Y T+I    K   +D    +
Sbjct: 14  PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 73

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   GI PNV TY +LI      G+ + A      M  + + PD   F+ALI A  +
Sbjct: 74  FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 133

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGT 268
            G +  A  +  EM      +DP  +T  +L+       ++D A+++++ M+ K+     
Sbjct: 134 EGKLVEAEKLYDEMVK--RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF--- 188

Query: 269 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+V  Y   I    +    E    V+ +M+++G++ + V  + LI     AG  + A EI
Sbjct: 189 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 248

Query: 327 LQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            +E  + G+   I++Y++L+ G C N K  +KA+ ++E+++  K++PT+ T N +I  +C
Sbjct: 249 FKEMVSDGVPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 307

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
              ++    ++  ++   G+ P+ + Y+ ++    RK   E    L  + KEDG +PN
Sbjct: 308 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 365



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 39/322 (12%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   MV  G +P++ TYG +++G  K G    AF     M    ++P  +++N +I    
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +D A ++  EM  E   + P+ +T                                
Sbjct: 63  KYKHMDDALNLFKEM--ETKGIRPNVVT-------------------------------- 88

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+  I+C    G W  A  +  DM ++ + PD    SALID     GK+  A ++  
Sbjct: 89  ---YSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYD 145

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   + I   I++YSSL+          +A +++E M S    P V T N LI   C   
Sbjct: 146 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYK 205

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ + MEV  +M   GL  NT+TY+IL+    +  D ++   +  +   DGV PN++ + 
Sbjct: 206 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 265

Query: 449 CII-GMCSR-RYEKARTLNEHV 468
            ++ G+C   + EKA  + E++
Sbjct: 266 TLLDGLCKNGKLEKAMVVFEYL 287



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 160/353 (45%), Gaps = 8/353 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +N ++      K  + A  + + ++  G++ +   Y++LI+     G+      +
Sbjct: 49  PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 108

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M+   I P+V T+ ALID   K G++ +A   Y  M  +++ P  V +++LI     
Sbjct: 109 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 168

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A  +   M ++ H   PD +T   L+K      +V+   EV++ + +  + G  
Sbjct: 169 HDRLDEAKQMFEFMVSK-HCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 226

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA---FEI 326
             Y I I    Q GD + A  ++ +M   GV P+ +  + L+D     GK+E A   FE 
Sbjct: 227 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 286

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           LQ +K   +   I +Y+ ++     A   +   +L+ ++    +KP V   N +I+  C 
Sbjct: 287 LQRSK---MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 343

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
                +   +  +MK  G  PN+  Y+ L+ A  R  D E    L+ + +  G
Sbjct: 344 KGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCG 396



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 9/388 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G      +LL  ME+  L     +Y+     +CK  K + +A   FK +     
Sbjct: 24  NGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK-YKHMDDALNLFKEMETKGI 82

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T++ L+S   +      A ++L  + E  +  D   ++ LI    K GK+    +
Sbjct: 83  RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 142

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ EMV   I+P++ TY +LI+G     ++ +A   +  M SK+  PD V +N LI    
Sbjct: 143 LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFC 202

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   V+   +V  EM+     +  + +T   L++    AG  D A+E++K +    +   
Sbjct: 203 KYKRVEEGMEVFREMSQ--RGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPN 260

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++   + G  E A  V++ + +  + P     + +I+    AGKVE  +++  
Sbjct: 261 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 320

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 387
               +G+   +++Y++++       + ++A  L++ MK     P     N LI A L DG
Sbjct: 321 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 380

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           D+   + E++ +M+S G   +  T  ++
Sbjct: 381 DR-EASAELIKEMRSCGFAGDASTIGLV 407



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
           ++ D M  KG  PD V    +++     G  + AF +L + +   +  G++ Y++++   
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
              K+   AL L++ M++  ++P V T ++LI+ LC+  +      +LSDM    + P+ 
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEH 467
            T+S L+ A  ++  +     L  +  +  + P++V +  +I G C   R ++A+ + E 
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 181

Query: 468 VLS 470
           ++S
Sbjct: 182 MVS 184


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 197/439 (44%), Gaps = 17/439 (3%)

Query: 27  EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           E  +   RL+R G + E    LEDM  +G +       +    +CK+ K  K A R  ++
Sbjct: 112 ENNNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWK-ATRVMEI 170

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P + T+N+L+S    + +   A Q+L       +  D   Y T++ T   SGK
Sbjct: 171 LEDSGAVPDVITYNVLISGYCKTGEIGSALQLL---DRMSVSPDVVTYNTILRTLCDSGK 227

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +    EV    +     P+V TY  LI+   K   V +A      MR K  KPD V +N 
Sbjct: 228 LKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNV 287

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIH 261
           LI    + G +D A   L  M +  +   P+ IT   ++++ C+    +D  + + +MI 
Sbjct: 288 LINGICKEGRLDEAIRFLNHMPS--YGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIR 345

Query: 262 KYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           K     +P V T  I IN   + G    A  V + M + G  P+ +  + L+       K
Sbjct: 346 K---GCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKK 402

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +E A E L    ++G    I++Y++L+ A         A+E+   + S    P + T N 
Sbjct: 403 MERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNT 462

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           +I  L    +    +++L +MK  GL P+ ITYS L+    R+  V+  +      +E G
Sbjct: 463 VIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMG 522

Query: 440 VIPNLVMFKCI-IGMCSRR 457
           V PN + +  I +G+C  R
Sbjct: 523 VKPNAITYNSIMLGLCKAR 541



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/420 (25%), Positives = 183/420 (43%), Gaps = 16/420 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAF---- 81
           +YN LI    + G I   + LL+ M     +  D V Y+     +C S K +KEA     
Sbjct: 182 TYNVLISGYCKTGEIGSALQLLDRMS----VSPDVVTYNTILRTLCDSGK-LKEAMEVLD 236

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R  +    P + T+ +L+           A ++L  +++ G K D   Y  LI    K G
Sbjct: 237 RQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEG 296

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++D      + M + G +PNV T+  ++      G+   A      M  K   P  V FN
Sbjct: 297 RLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFN 356

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    + G + RA DVL +M    H   P+ ++   L+ A     +++RA E   ++ 
Sbjct: 357 ILINFLCRKGLIGRAIDVLEKMPQ--HGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMV 414

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                     Y   +    + G  + A  + + +  KG  P  +  + +ID     GK +
Sbjct: 415 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTD 474

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A ++L E K +G+   II+YS+L+G  S      +A+  +  ++ + +KP   T N+++
Sbjct: 475 DAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIM 534

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   Q  + ++ L+ M + G  P   +Y IL+     +   +  L LL++    GV+
Sbjct: 535 LGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVV 594


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 191/426 (44%), Gaps = 46/426 (10%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MFEVFH 151
           T+N L++ CA + D E A  ++  +++ G  +D   Y+ +I +  +S ++D+  + +++ 
Sbjct: 186 TYNALINACARNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYS 245

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           E+    +E +V     +I G AKAG   KA    G++++  + P      A+I+A G SG
Sbjct: 246 EIQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSG 305

Query: 212 AVDRAFDVLAEMN---------------------------------AEVHPVDPDHITIG 238
            +  A  +  EM                                   E   V PD  T  
Sbjct: 306 RIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYS 365

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+ A +NAG+ + AR V K +   NI     V++  +      G+W+ +  V  +M   
Sbjct: 366 LLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNS 425

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV PD  F + +ID  G    ++ A +   +  ++GI    +++++L+     A+  ++A
Sbjct: 426 GVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERA 485

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            EL+E M      P V+T N +I +  + ++      ++ +M+SLGL PN +TY+ L+  
Sbjct: 486 EELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDI 545

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----------RYEKARTLNEH 467
             +       +  L   K  G+ P+  M+  +I   ++           R  +A +L   
Sbjct: 546 YGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPS 605

Query: 468 VLSFNS 473
           +L+ NS
Sbjct: 606 LLALNS 611



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 175/412 (42%), Gaps = 18/412 (4%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
           A + D   A + L +VQ +GL         +I+    SG++     +F EM + G++P  
Sbjct: 267 AKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKT 326

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
             Y  L+ G  KAG +  A      M    V PD   ++ LI A   +G  + A  VL E
Sbjct: 327 RAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKE 386

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  E + + P+      ++ +  + G+  ++ +V K +    ++     Y + I+   + 
Sbjct: 387 M--EANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKF 444

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
              + A   +D M  +G+ PD V  + LID    A   E A E+ +E   +G S  + ++
Sbjct: 445 SCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTF 504

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           + ++ +    + W     L  +M+S+ L P V T   LI       +    +E L DMKS
Sbjct: 505 NIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKS 564

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
            GL P++  Y+ L+ A  +K   E  +      + D + P+L+    +I         A 
Sbjct: 565 AGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNSLINAFGEDRRDAE 624

Query: 463 TLNEHVLSF---NSGRPQIENKWTSLALM-----------VYREAIVAGTIP 500
             +  VL +   N  +P +    T +  +           VY E I+AG  P
Sbjct: 625 AFS--VLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPSVYEEMILAGCTP 674



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 165/385 (42%), Gaps = 5/385 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           GRI E   + E+M+  GL    + Y+       K+       F   ++  +   P   T+
Sbjct: 305 GRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTY 364

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           ++L+   +++   E A  VL+ ++   +  +  +++ ++ +    G+    F+V  EM N
Sbjct: 365 SLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKN 424

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           +G+ P+ H Y  +ID   K   +  A   +  M S+ ++PD V +N LI    ++   +R
Sbjct: 425 SGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHER 484

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A ++  EM  +     P   T   ++ +     + D  + +   +    +      YT  
Sbjct: 485 AEELFEEMMEK--GFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTL 542

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+   ++G +  A    +DM   G+ P     +ALI+     G  E A    +  +   +
Sbjct: 543 IDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSL 602

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              +++ +SL+ A    +   +A  + ++MK   LKP V T   L+ AL   D+  K   
Sbjct: 603 KPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKFNKVPS 662

Query: 396 VLSDMKSLGLCPNTITYSILLVACE 420
           V  +M   G  P+    ++L  A +
Sbjct: 663 VYEEMILAGCTPDRKARAMLRSALK 687


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 198/426 (46%), Gaps = 7/426 (1%)

Query: 40  RISECIDLLEDM----ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RISE + L++ M     +   +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 149 RISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTY 207

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
             +++      D + A  +L+ +++  ++AD  +YTT+I        V+    +F EM N
Sbjct: 208 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN 267

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            GI PNV TY +LI      G+ + A      M  + + P+ V F+ALI A  + G +  
Sbjct: 268 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 327

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  +  EM      +DPD  T  +L+       ++D A+ +++++   +       Y   
Sbjct: 328 AEKLYDEMIK--RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 385

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I    +    E    ++ +M+++G++ + V  + LI     AG  + A +I ++  + G+
Sbjct: 386 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 445

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              II+YS L+         +KAL ++E+++  K++P + T N +I  +C   ++    +
Sbjct: 446 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 505

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           +   +   G+ PN I Y+ ++    RK   E    L  + KEDG +PN   +  +I    
Sbjct: 506 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 565

Query: 456 RRYEKA 461
           R  +KA
Sbjct: 566 RDGDKA 571



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 199/442 (45%), Gaps = 14/442 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  L+SYN LI    R+ ++   + +L  M + G  + D V  +   N     K I EA
Sbjct: 95  ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGY-EPDIVTLSSLLNGYCHGKRISEA 153

Query: 81  F----RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
                + F +   P   TFN L+  +   +K SE    + R+V   G + D   Y T++ 
Sbjct: 154 VALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVN 212

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K G +D    +  +M    IE +V  Y  +ID       V  A   +  M +K ++P
Sbjct: 213 GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRP 272

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + V +N+LI      G    A  +L++M      ++P+ +T  AL+ A    G++  A +
Sbjct: 273 NVVTYNSLIRCLCNYGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKLVEAEK 330

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +Y  + K +I      Y+  IN        + A  +++ M  K   P+ V  + LI    
Sbjct: 331 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 390

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            A +VE   E+ +E   +G+    ++Y++L+     A +   A ++++ M S  + P + 
Sbjct: 391 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 450

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T + L+  LC   +L K + V   ++   + P+  TY+I++    +   VE G  L    
Sbjct: 451 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 510

Query: 436 KEDGVIPNLVMFKCII-GMCSR 456
              GV PN++++  +I G C +
Sbjct: 511 SLKGVKPNVIIYTTMISGFCRK 532



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 170/418 (40%), Gaps = 39/418 (9%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P++  FN L+S  A     +    +   +Q   +  D   Y  LI    +  ++    
Sbjct: 60  PLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLAL 119

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            V  +M+  G EP++ T  +L++G     ++++A      M     +P+ V FN LI   
Sbjct: 120 AVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGL 179

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
                   A  ++  M A      PD  T G ++      G +D A  + K + K  I+ 
Sbjct: 180 FLHNKASEAVALIDRMVA--RGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEA 237

Query: 268 TPEVYTIAIN-----------------------------------CCSQTGDWEFACSVY 292
              +YT  I+                                   C    G W  A  + 
Sbjct: 238 DVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 297

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            DM ++ + P+ V  SALID     GK+  A ++  E   + I   I +YSSL+      
Sbjct: 298 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 357

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
               +A  ++E M S    P V T N LI   C   ++ + ME+  +M   GL  NT+TY
Sbjct: 358 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 417

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
           + L+    +  D ++   +  +   DGV P+++ +  ++ G+C   + EKA  + E++
Sbjct: 418 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 475



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 172/403 (42%), Gaps = 38/403 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I   + LL+ ME KG ++ D V +    +   + K + +A   F  + N   
Sbjct: 212 NGLCKRGDIDLALSLLKKME-KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 270

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N L+    +      A ++L  + E  +  +   ++ LI    K GK+    +
Sbjct: 271 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 330

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ EM+   I+P++ TY +LI+G     ++ +A   + +M SK+  P+ V +N LI    
Sbjct: 331 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 390

Query: 209 QSGAVDRAFDVLAEMNAE---------------------------------VHPVDPDHI 235
           ++  V+   ++  EM+                                      V PD I
Sbjct: 391 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 450

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+      G++++A  V++ + K  ++     Y I I    + G  E    ++  +
Sbjct: 451 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 510

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
           + KGV P+ +  + +I      G  E A  + +E K  G      +Y++L+ A     + 
Sbjct: 511 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDK 570

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
             + EL + M+S       ST++ +I  L DG      +E+LS
Sbjct: 571 AASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEMLS 613


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 198/428 (46%), Gaps = 9/428 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RF 83
           +YN LI    RQG + E  +L++ M  KGL      Y+A    +CK+ K ++        
Sbjct: 395 TYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM 454

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+  +P  +T+N+L+  C  + +   A ++   +   G+  D   ++ LI   +K+G +
Sbjct: 455 LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCL 514

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   + F +M NAG+ P+   Y  LI G  + G +++A      M  +    D V +N +
Sbjct: 515 DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTI 574

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +    +   +  A ++  EM      V PD  T   L+      G +++A  +++M+ + 
Sbjct: 575 LNGLCKEKMLSEADELFTEMTE--RGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQR 632

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           N+K     Y   I+   +  + E    +++DM  + + P+ +    LI+   + G V  A
Sbjct: 633 NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEA 692

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           F +  E   +G    II+ ++++     A N  KA E   +M    + P   T N LI  
Sbjct: 693 FRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLING 752

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
               + + +   +++ M++ GL P+ ITY+++L    R+  ++   +++ +  E GV P+
Sbjct: 753 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 812

Query: 444 LVMFKCII 451
              +  +I
Sbjct: 813 RSTYTSLI 820



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 2/323 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T N++++    ++  E     L  ++E G+  D   Y TLI    + G ++  FE+   M
Sbjct: 360 TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM 419

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G++P V TY A+I+G  K G+  +A G    M    + PD   +N L+  C ++  +
Sbjct: 420 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 479

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A  +  EM ++   V PD ++  AL+   +  G +D+A + ++ +    +     +YT
Sbjct: 480 MDAERIFDEMPSQ--GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYT 537

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I I    + G    A  V D+M ++G   D V  + +++       +  A E+  E   +
Sbjct: 538 ILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTER 597

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+     ++++L+       N  KA+ L+E M    LKP V T N LI   C G ++ K 
Sbjct: 598 GVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 657

Query: 394 MEVLSDMKSLGLCPNTITYSILL 416
            E+ +DM S  + PN I+Y IL+
Sbjct: 658 NELWNDMISRRIYPNHISYGILI 680



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 223/499 (44%), Gaps = 24/499 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP +  F++L+     ++      +  R+++  GL        +L+    K G VD  +E
Sbjct: 287 NPLV--FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWE 344

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ E+V +G++ NV+T   +I+   K  ++         M  K V PD V +N LI A  
Sbjct: 345 IYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC 404

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G ++ AF+++  M+ +   + P   T  A++      G+  RA+ V   + K  +   
Sbjct: 405 RQGLLEEAFELMDSMSGK--GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 462

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I +  C +  +   A  ++D+M  +GV+PD V  SALI      G ++ A +  +
Sbjct: 463 TATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFR 522

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + KN G++   + Y+ L+G         +AL++ + M        V T N ++  LC   
Sbjct: 523 DMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEK 582

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L +  E+ ++M   G+ P+  T++ L+    +  ++   + L     +  + P++V + 
Sbjct: 583 MLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYN 642

Query: 449 CII-GMC-SRRYEKARTLNEHVLSFNSGRPQIE-----NKWTSL-----ALMVYREAIVA 496
            +I G C     EK   L   ++S       I      N + ++     A  ++ E +  
Sbjct: 643 TLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEK 702

Query: 497 GTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGF--GEYD 551
           G   T+   + ++       NA   +  + N+   G+  D +  +   +LI+GF   E  
Sbjct: 703 GFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYN---TLINGFIKEENM 759

Query: 552 PRAFSLLEEAASFGIVPCV 570
            RAF+L+ +  + G++P V
Sbjct: 760 DRAFALVNKMENSGLLPDV 778



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 195/429 (45%), Gaps = 7/429 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L +  +I      L DME KG+   D V +    N    Q  ++EAF     +     
Sbjct: 366 NALCKNQKIENTKSFLSDMEEKGVFP-DVVTYNTLINAYCRQGLLEEAFELMDSMSGKGL 424

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N +++    +     A  VL  + + G+  D   Y  L+  C ++  +     
Sbjct: 425 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER 484

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM + G+ P++ ++ ALI   +K G + +A   +  M++  + PD V++  LI    
Sbjct: 485 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 544

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G +  A  V  EM  +   +D   +T   ++        +  A E++  + +  +   
Sbjct: 545 RNGVMSEALKVRDEMLEQGCXLDV--VTYNTILNGLCKEKMLSEADELFTEMTERGVFPD 602

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +T  IN   + G+   A ++++ M ++ + PD V  + LID      ++E   E+  
Sbjct: 603 FYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWN 662

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +  ++ I    ISY  L+    N     +A  L++ M     + T+ T N ++   C   
Sbjct: 663 DMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG 722

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              K  E LS+M   G+ P+ ITY+ L+    ++++++    L+++ +  G++P+++ + 
Sbjct: 723 NAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYN 782

Query: 449 CIIGMCSRR 457
            I+   SR+
Sbjct: 783 VILNGFSRQ 791



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 134/310 (43%), Gaps = 44/310 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R G +SE + + ++M  +G   +D V +    N    +K + EA   F  +      P  
Sbjct: 545 RNGVMSEALKVRDEMLEQGCX-LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 603

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            TF  L++      +   A  +  ++ +  LK D   Y TLI    K  +++ + E++++
Sbjct: 604 YTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWND 663

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY--------------------GIMRSKN 192
           M++  I PN  +YG LI+G    G V++AF  +                    G  R+ N
Sbjct: 664 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 723

Query: 193 ---------------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
                          + PD + +N LI    +   +DRAF ++ +M  E   + PD IT 
Sbjct: 724 AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM--ENSGLLPDVITY 781

Query: 238 GALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             ++   +  G++  A  +  KMI +  +      YT  IN      + + A  V+D+M 
Sbjct: 782 NVILNGFSRQGRMQEAELIMLKMIER-GVNPDRSTYTSLINGHVTQNNLKEAFRVHDEML 840

Query: 297 KKGVIPDEVF 306
           ++G +PD+ F
Sbjct: 841 QRGFVPDDKF 850



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 36/243 (14%)

Query: 250 VDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           V R   V  ++  Y N    P V+ + +    Q       C  +  +  KG+       +
Sbjct: 268 VSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACN 327

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVG------------------------------ 338
           +L+      G V+ A+EI QE    G+ V                               
Sbjct: 328 SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEK 387

Query: 339 -----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
                +++Y++L+ A       ++A EL + M    LKP V T NA+I  LC   +  + 
Sbjct: 388 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 447

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
             VL +M  +G+ P+T TY+ILLV C R D++     +  +    GV+P+LV F  +IG+
Sbjct: 448 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 507

Query: 454 CSR 456
            S+
Sbjct: 508 LSK 510


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/454 (24%), Positives = 196/454 (43%), Gaps = 40/454 (8%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK------------DSEG 110
           +H++  N      A+    R   + P P+   FN L++  A +K            DS G
Sbjct: 38  FHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFG 97

Query: 111 -----------------------AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
                                  AF VL  + + GL+ D   +TTLI      GK+    
Sbjct: 98  IPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDAL 157

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F +M+  G +PNV TYG LI+G  K G    A      M   N +PD VV+ ++I + 
Sbjct: 158 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 217

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +   V  AF++ ++M  +   + PD  T  +L+ +  N  +      +   +    I  
Sbjct: 218 CKDRQVTEAFNLFSKMVGQ--GISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMP 275

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
              +++  ++   + G    A  V D M  +GV P+ V  +AL+D      +++ A ++ 
Sbjct: 276 DVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVF 335

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
               + G +  +ISY++L+      +   KA  L+E M   +L P   T N L+  LC  
Sbjct: 336 DTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHV 395

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +L   + +  +M + G  P+  TY ILL    +K  ++  + LL   +   + P++ ++
Sbjct: 396 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIY 455

Query: 448 KCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIE 479
             +I GMC +   E AR +  + LS    RP + 
Sbjct: 456 TIVIDGMCRAGELEAARDIFSN-LSSKGLRPNVR 488



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 173/379 (45%), Gaps = 15/379 (3%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K I E F+       P + T+  L++      ++  A ++LR +++   + D  +YT++I
Sbjct: 162 KMIGEGFQ-------PNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSII 214

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +  K  +V   F +F +MV  GI P++ TY +LI       +          M +  + 
Sbjct: 215 DSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIM 274

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V+F+ ++ A  + G +  A DV+  M   +  V+P+ +T  ALM       ++D A 
Sbjct: 275 PDVVIFSTVVDALCKEGKITEAHDVVDMM--IIRGVEPNVVTYNALMDGHCLQSEMDEAV 332

Query: 255 EVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +V+  M+H       P V  Y   IN   +    + A  ++++M +K +IP+ V  + L+
Sbjct: 333 KVFDTMVHN---GYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLM 389

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
               H G+++ A  +  E    G    + +Y  L+       +  +A+ L + ++   + 
Sbjct: 390 HGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMD 449

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P +     +I  +C   +L    ++ S++ S GL PN  TY+I++    R+  ++    L
Sbjct: 450 PDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKL 509

Query: 432 LSQAKEDGVIPNLVMFKCI 450
             +   +G  P+   +  I
Sbjct: 510 FMEMDGNGCSPDGCTYNTI 528



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 177/405 (43%), Gaps = 40/405 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N L + G  +  I LL  ME+        VY +   ++CK ++ + EAF  F K+V    
Sbjct: 180 NGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ-VTEAFNLFSKMVGQGI 238

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+  L+    +  + +    +L  +  + +  D  +++T++    K GK+    +
Sbjct: 239 SPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHD 298

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V   M+  G+EPNV TY AL+DG     ++ +A   +  M      P+ + +N LI    
Sbjct: 299 VVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYC 358

Query: 209 QSGAVDRAFDVLAEM------------NAEVHPV---------------------DPDHI 235
           +   +D+A  +  EM            N  +H +                      PD  
Sbjct: 359 KIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLA 418

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+        +D A  + K I   N+    ++YTI I+   + G+ E A  ++ ++
Sbjct: 419 TYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNL 478

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
           + KG+ P+    + +I+     G ++ A ++  E    G S    +Y+++       K  
Sbjct: 479 SSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEA 538

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM-EVLSD 399
            +A++L + M +      VST   L+  LCD D+L +++ ++LS+
Sbjct: 539 LRAIQLLQEMLARGFSADVSTTTLLVEMLCD-DKLDQSVKQILSE 582



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 11/227 (4%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H  YA +V     SYN LI    +  R+ +   L E+M +K L+     Y+     +C  
Sbjct: 340 HNGYAPNVI----SYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHV 395

Query: 74  QKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
            +       F ++V +   P L+T+ +L+         + A  +L+ ++ + +  D ++Y
Sbjct: 396 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIY 455

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T +I    ++G+++A  ++F  + + G+ PNV TY  +I+G  + G + +A   +  M  
Sbjct: 456 TIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDG 515

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
               PD   +N +     Q+    RA  +L EM A     D    T+
Sbjct: 516 NGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTL 562


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 180/406 (44%), Gaps = 5/406 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L R G+I E  ++   M+ +G       Y      +C + +       F K+  N   P 
Sbjct: 272 LGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPD 331

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
              +  L+       D +   +    ++  G   D   +T L+    K+   D  F  F 
Sbjct: 332 QVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFD 391

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   GI PN+HTY  LI G  +AG++  A      M S  V+P    +   I   G+SG
Sbjct: 392 VMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSG 451

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
              +A +   +M A+   + P+ +   A + + A  G++  A+ ++  + +  +      
Sbjct: 452 ETGKAVETFEKMKAK--GIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVT 509

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + + C S+ G  + A ++  +M + G  PD + +++LID    AG+V+ A+++    K
Sbjct: 510 YNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMK 569

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +  +S  +++Y++L+         QKA+EL+E M   K  P   + N L+   C  D++ 
Sbjct: 570 DMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVE 629

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             +++ S M  +   P+ +TY+ ++    +++ V        Q K+
Sbjct: 630 LALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKK 675



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 164/348 (47%), Gaps = 3/348 (0%)

Query: 98   LMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
            L+ V    K    A+Q+  +  ++ G+      Y  LI    +    +  +++F +M N 
Sbjct: 758  LVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNV 817

Query: 157  GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
            G  P+  T+  L+    K+G++ + F  Y  M S+  KPD + +N +I++  +S  +D+A
Sbjct: 818  GCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKA 877

Query: 217  FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             D   ++ +      P   T G L+   A  G+++ A  +++ +  Y  K    ++ I I
Sbjct: 878  LDFFYDLVSS--DFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILI 935

Query: 277  NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
            N   + GD E AC ++  M  +G+ PD    + L+D    AG+V+ A     E K+ G+ 
Sbjct: 936  NGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLD 995

Query: 337  VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
               I+Y+ ++     ++  ++AL LY  M++  + P + T N+L+  L     + +   +
Sbjct: 996  PDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055

Query: 397  LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
              +++  GL P+  TY+ L+      ++ E    +      DG  PN+
Sbjct: 1056 YEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNI 1103



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 203/452 (44%), Gaps = 34/452 (7%)

Query: 27  EQLHSYNRLIRQG------------------RISECID-LLEDMERKGLLDMDKVYHARF 67
           E L  Y R++ +G                  R SE +  LL++ME  GL     VY    
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGL--RPNVYT--- 264

Query: 68  FNVC----KSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           F +C         I EA+  F+ + +    P L T+ +L+    ++   E A ++   ++
Sbjct: 265 FTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMK 324

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
             G K D  +Y TL+      G +D   E + +M   G  P+V T+  L+D   KA    
Sbjct: 325 ANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFD 384

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           +AF  + +MR + + P+   +N LI    ++G ++ A  +L  M  E   V P   T   
Sbjct: 385 EAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTM--ESVGVQPTAYTYIT 442

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
            +     +G+  +A E ++ +    I         ++   ++ G    A ++++ + + G
Sbjct: 443 FIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENG 502

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + PD V  + ++      G+V+ A  +L E    G    +I  +SL+ +   A    +A 
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAW 562

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           ++++ MK +KL PTV T N L++ L    ++ K +E+   M      PNTI+++ LL   
Sbjct: 563 QMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCF 622

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            + D+VE+ L + S+       P+++ +  +I
Sbjct: 623 CKNDEVELALKMFSKMTVMDCKPDVLTYNTVI 654



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 210/476 (44%), Gaps = 27/476 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+L T++ LM      +DSE    +L+ +++ GL+ +   +T  I    ++GK+D  +E+
Sbjct: 225 PSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEI 284

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M + G  P++ TY  LID    AGQ+  A   +  M++   KPD+V++  L+     
Sbjct: 285 FRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFND 344

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D   +  ++M A+ +   PD +T   L+     A   D A   + ++ K  I    
Sbjct: 345 FGDLDTFKEFWSQMEADGYM--PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNL 402

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I    + G  E A  + D M   GV P        ID+ G +G+   A E  ++
Sbjct: 403 HTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEK 462

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K +GI   I++ ++ + + +     ++A  ++  ++   L P   T N ++       Q
Sbjct: 463 MKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQ 522

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + + + +LS+M   G  P+ I  + L+ +  +   V+    +  + K+  + P +V +  
Sbjct: 523 VDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNT 582

Query: 450 IIGMCSR--RYEKARTLNE---------HVLSFNSGRPQI-ENKWTSLALMVYREAIVAG 497
           ++    +  R +KA  L E         + +SFN+      +N    LAL ++ +  V  
Sbjct: 583 LLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMD 642

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRS------NLCSLIDGF 547
             P V   + V+  L       I+E  V +       LK+S       +C+L+ G 
Sbjct: 643 CKPDVLTYNTVIYGL-------IKENKVNHAFWFFHQLKKSMHPDHVTICTLLPGL 691



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 174/358 (48%), Gaps = 2/358 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++N L+ +   S     A +V R +   GLK   K Y+ L+    K    + +  +  EM
Sbjct: 194 SYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            + G+ PNV+T+   I    +AG++ +A+  +  M  +   PD V +  LI A   +G +
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQL 313

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + A ++  +M A  H   PD +    L+    + G +D  +E +  +           +T
Sbjct: 314 ENAKELFVKMKANGHK--PDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFT 371

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I ++   +  D++ A + +D M K+G++P+    + LI     AG++E A ++L   ++ 
Sbjct: 372 ILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESV 431

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+     +Y + +     +    KA+E +E MK+  + P +   NA + +L +  +L + 
Sbjct: 432 GVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREA 491

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             + + ++  GL P+++TY++++    +   V+  + LLS+   +G  P++++   +I
Sbjct: 492 KTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLI 549



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 167/351 (47%), Gaps = 8/351 (2%)

Query: 70   VCKSQKAIKEAFRFF-----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            +CK ++ +  A++ F     KL  +PTL+++N L+        +E A+ + + ++  G  
Sbjct: 762  LCKHKRELY-AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCA 820

Query: 125  ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
             D   +  L+    KSGK+  +FE++ EM++   +P+  TY  +I   AK+  + KA   
Sbjct: 821  PDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDF 880

Query: 185  YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
            +  + S + +P    +  LI    + G ++ A  +  EM+   +   P+      L+   
Sbjct: 881  FYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSD--YGCKPNCAIFNILINGY 938

Query: 245  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
               G  + A +++K +    I+   + YTI ++C    G  + A   ++++   G+ PD 
Sbjct: 939  GKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDF 998

Query: 305  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
            +  + +I+  G + ++E A  +  E +N+GI   + +Y+SLM     A   ++A  +YE 
Sbjct: 999  IAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEE 1058

Query: 365  MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            ++   L+P V T NALI      +       V  +M   G  PN  TY+ L
Sbjct: 1059 LQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQL 1109



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 158/355 (44%), Gaps = 6/355 (1%)

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           VL  +++AG   +   Y  LI    +SG      EV+  MV+ G++P++ TY AL+    
Sbjct: 179 VLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALG 238

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           K             M    ++P+   F   I   G++G +D A+++   M+ E     PD
Sbjct: 239 KKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE--GCGPD 296

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +T   L+ A  NAGQ++ A+E++  +     K    +Y   ++  +  GD +     + 
Sbjct: 297 LVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWS 356

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M   G +PD V  + L+D    A   + AF      + QGI   + +Y++L+     A 
Sbjct: 357 QMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAG 416

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             + AL+L + M+S+ ++PT  T    I       +  K +E    MK+ G+ PN +  +
Sbjct: 417 RIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACN 476

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
             L +      +     + +  +E+G+ P+ V +     M  + Y K   ++E V
Sbjct: 477 ASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTY----NMMMKCYSKVGQVDEAV 527



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/306 (23%), Positives = 143/306 (46%), Gaps = 3/306 (0%)

Query: 147  FEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            +++F +     GI P + +Y  LI    +     KA+  +  M++    PD   FN L+ 
Sbjct: 772  YQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLA 831

Query: 206  ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              G+SG +   F++  EM +      PD IT   ++ + A +  +D+A + +  +   + 
Sbjct: 832  VHGKSGKITELFELYKEMIS--RRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDF 889

Query: 266  KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            + TP  Y   I+  ++ G  E A  ++++M+  G  P+    + LI+  G  G  E A +
Sbjct: 890  RPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQ 949

Query: 326  ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            + +   N+GI   + SY+ L+     A    +AL  +  +KS  L P     N +I  L 
Sbjct: 950  LFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLG 1009

Query: 386  DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               ++ + + + ++M++ G+ P+  TY+ L++       VE    +  + +  G+ P++ 
Sbjct: 1010 KSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVF 1069

Query: 446  MFKCII 451
             +  +I
Sbjct: 1070 TYNALI 1075



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/424 (20%), Positives = 175/424 (41%), Gaps = 45/424 (10%)

Query: 70  VCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +CK+ +   EAF  F ++      P L T+N L+     +   E A ++L  ++  G++ 
Sbjct: 377 LCKA-RDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQP 435

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
               Y T I    KSG+     E F +M   GI PN+    A +   A+ G++ +A   +
Sbjct: 436 TAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMF 495

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             +R   + PD V +N ++    + G VD A ++L+EM    +  +PD I + +L+ +  
Sbjct: 496 NGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIR--NGCEPDVIVVNSLIDSLY 553

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            AG+VD A +++  +    +  T   Y   ++   + G  + A  +++ M  K   P+ +
Sbjct: 554 KAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTI 613

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + L+D      +VE A ++  +         +++Y++++           A   +  +
Sbjct: 614 SFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQL 673

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM---------KSL------------- 403
           K   + P   T+  L+  L    Q+   + +  D          +S              
Sbjct: 674 KK-SMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLVEAE 732

Query: 404 --------------GLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
                         G+C  ++    ++ V C+ K ++    +     K+ G+ P L  + 
Sbjct: 733 MDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGISPTLASYN 792

Query: 449 CIIG 452
           C+IG
Sbjct: 793 CLIG 796



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            L +   + + +D   D+         + Y      + K  + ++EA R F+ + +    P
Sbjct: 868  LAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGR-LEEAMRLFEEMSDYGCKP 926

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              + FN+L++      D+E A Q+ + +   G++ D K YT L+     +G+VD     F
Sbjct: 927  NCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +E+ + G++P+   Y  +I+G  K+ ++ +A   Y  MR++ + PD   +N+L+   G +
Sbjct: 987  NELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLA 1046

Query: 211  GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            G V++A  +  E+  ++  ++PD  T  AL++  + +   + A  VYK
Sbjct: 1047 GMVEQAKRMYEEL--QLAGLEPDVFTYNALIRGYSLSENPEHAYTVYK 1092



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 126/323 (39%), Gaps = 2/323 (0%)

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KV+ M  VF  M    I  ++ TY  +    +  G + +       MR      +   +N
Sbjct: 137 KVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYN 196

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    QSG    A +V   M +E   + P   T  ALM A       +    + K + 
Sbjct: 197 GLIHLLIQSGFCGEALEVYRRMVSE--GLKPSLKTYSALMVALGKKRDSEMVMVLLKEME 254

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              ++     +TI I    + G  + A  ++  M  +G  PD V  + LID   +AG++E
Sbjct: 255 DLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLE 314

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E+  + K  G     + Y +L+   ++  +     E +  M++    P V T   L+
Sbjct: 315 NAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILV 374

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC      +       M+  G+ PN  TY+ L+    R   +E  L LL   +  GV 
Sbjct: 375 DVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQ 434

Query: 442 PNLVMFKCIIGMCSRRYEKARTL 464
           P    +   I    +  E  + +
Sbjct: 435 PTAYTYITFIDYFGKSGETGKAV 457



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 310 LIDFAGHAGKVE---AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           +++F     KVE   A FE +Q+   + I   + +Y ++  A S     ++   +   M+
Sbjct: 128 MLEFLRVHDKVEDMAAVFEFMQK---KIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMR 184

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
                    + N LI  L       + +EV   M S GL P+  TYS L+VA  +K D E
Sbjct: 185 KAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSE 244

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           + ++LL + ++ G+ PN+  F   I +  R
Sbjct: 245 MVMVLLKEMEDLGLRPNVYTFTICIRVLGR 274


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 173/394 (43%), Gaps = 42/394 (10%)

Query: 70  VCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +CK  K +K+A  F   + N    P + T+N ++    S    EGA  VL +++  G++ 
Sbjct: 246 LCKEGK-LKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEP 304

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   Y +LI+   K GK++    +  +M   G+ P   TY  LIDG    G + KAFG  
Sbjct: 305 DSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYR 364

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M  + + P    +N LI A    G +D A  ++ +M      + PD IT   L+    
Sbjct: 365 DEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDS--GIVPDSITYNILINGYC 422

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ------------------------ 281
             G   +A  ++  +    I+ T   YT  I   S+                        
Sbjct: 423 RCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLI 482

Query: 282 -----------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
                       G+ + A ++  +M K+ ++PDEV  + L+      GKVE A E+L+E 
Sbjct: 483 MFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEM 542

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K +GI    ISY++L+   S   +   A  + + M SI   PT+ T NALI  LC   Q 
Sbjct: 543 KRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQG 602

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
               E+L +M S G+ P+  TY  L+    + DD
Sbjct: 603 DLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDD 636



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 116/492 (23%), Positives = 213/492 (43%), Gaps = 35/492 (7%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
               C   K   +AF  F ++      P + TFN ++S+      +E  + +   +    
Sbjct: 172 LIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLK 231

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           +K+    +  +I    K GK+    +    M N G++PNV TY  +I G    G+V  A 
Sbjct: 232 IKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGAR 291

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
               IM+++ V+PD   + +LI+   + G ++ A  +L +M  E+  + P  +T   L+ 
Sbjct: 292 MVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMK-EIGLL-PTAVTYNTLID 349

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
              N G + +A      + +  I  T   Y + I+     G  + A  +  DM   G++P
Sbjct: 350 GYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVP 409

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D +  + LI+     G  + AF +  E  ++GI   +++Y+SL+   S     + A +L+
Sbjct: 410 DSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLF 469

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           E +      P +   NALI   C    L +   +L +M    + P+ +TY+ L+    R+
Sbjct: 470 EKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCRE 529

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
             VE    LL + K  G+ P+ + +  +I   S+R +    +N+                
Sbjct: 530 GKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGD----IND---------------- 569

Query: 483 TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSN 539
              A  +  E +  G  PT+   + ++  L      D+ E L++ +   G++ D    S 
Sbjct: 570 ---AFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDD---ST 623

Query: 540 LCSLIDGFGEYD 551
             SLI+G G+ D
Sbjct: 624 YFSLIEGIGKVD 635



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 19/220 (8%)

Query: 15  NGKHANYAHD------VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH 64
           N K A   HD      +   L +Y  LI    ++ R+    DL E + R+G      +++
Sbjct: 426 NAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFN 485

Query: 65  ARFFNVCKSQKAIKEAFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
           A     C +   +  AF   K      +VP+    T+N LM         E A ++L+ +
Sbjct: 486 ALIDGHC-ANGNLDRAFALLKEMDKRNIVPDEV--TYNTLMQGRCREGKVEEARELLKEM 542

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           +  G++ D   Y TLI+  +K G ++  F +  EM++ G  P + TY ALI G  K  Q 
Sbjct: 543 KRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQG 602

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
             A      M SK + PD   + +LI   G+      A D
Sbjct: 603 DLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEASD 642


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 196/455 (43%), Gaps = 55/455 (12%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           H N  +  S  + +Y R    G  S+ +DL   M   G+      Y++      K +   
Sbjct: 209 HGNTVYSFSAMISAYGR---NGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDF 265

Query: 78  KEAFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
               +FF       +VP+    T+N L+SVCAS    E A ++L  + + G+  D   Y 
Sbjct: 266 DVVVKFFDEMLAEGIVPDRL--TYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYN 323

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           T + T  K G++D    V  EM +  + P V TY  +IDGCAKA  +  A   Y  M+ +
Sbjct: 324 TYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLR 383

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           ++  DRV +N ++    + G  D A     EM  E   +  D +T  AL+      G  D
Sbjct: 384 SISVDRVSYNTMVGIYAKLGRFDEAIGQCKEM--ESCGMKRDVVTYNALLSGYGRYGMYD 441

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
             R +++ +  +NI      Y+  I+  ++ G ++ A  VY D  K  +  D VF +++I
Sbjct: 442 EVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSII 501

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D     G VE++  +L     +GI   +++++S++ A   +      LE   H  S  ++
Sbjct: 502 DSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQS----PTLEYGVHGSSQAVE 557

Query: 372 -PTVSTMNALITALCDG--------DQLPKTMEVLS------------------------ 398
            PT      L + L DG        D++ K  E L+                        
Sbjct: 558 YPT----EQLSSMLIDGAFQNKTGDDRILKMFEQLAAEKAGHREKDRKGRQDQHCILWLF 613

Query: 399 -DMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
             M  L + PN +T+S +L AC R +  E   MLL
Sbjct: 614 QKMHELNIKPNVVTFSAILNACSRCNSFEDASMLL 648



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 162/346 (46%), Gaps = 12/346 (3%)

Query: 113 QVLRLVQEAGLKADCKL---YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
             LRL + A L+        ++ +I+   ++G      ++F  M + G+ PN+ +Y +LI
Sbjct: 196 HALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLI 255

Query: 170 DGCAKA----GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
           D  AK       V K F     M ++ + PDR+ +N+L++ C   G  + A  +L+EM+ 
Sbjct: 256 DAGAKGEVDFDVVVKFFDE---MLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQ 312

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
           +   +  D  T    +      GQ+D AR V + +    +  T   Y+  I+ C++    
Sbjct: 313 K--GIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLL 370

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           E A ++Y++M  + +  D V  + ++      G+ + A    +E ++ G+   +++Y++L
Sbjct: 371 EDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNAL 430

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +        + +   L+E MK+  + P   T + +I     G    + M+V  D K   L
Sbjct: 431 LSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQL 490

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             + + Y+ ++ +  +   VE  +MLL    E G+ PN+V F  II
Sbjct: 491 EVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSII 536



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 167/367 (45%), Gaps = 9/367 (2%)

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           I  A R F+         T+ +F+ ++S    +     A  + R ++  G+  +   Y +
Sbjct: 194 INHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNS 253

Query: 133 LITTCAKSGKVD--AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           LI   AK G+VD   + + F EM+  GI P+  TY +L+  CA  G    A      M  
Sbjct: 254 LIDAGAK-GEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQ 312

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           K +  D   +N  +    + G +D A  VL EM++    V P  +T   ++  CA A  +
Sbjct: 313 KGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSR--RVWPTVVTYSTMIDGCAKANLL 370

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           + A  +Y+ +   +I      Y   +   ++ G ++ A     +M   G+  D V  +AL
Sbjct: 371 EDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNAL 430

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           +   G  G  +    + +E K   I    ++YS+++   +    +Q+A+++Y+  K  +L
Sbjct: 431 LSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQL 490

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           +  V    ++I +LC    +  ++ +L  M   G+ PN +T++ ++ A  +   +E G+ 
Sbjct: 491 EVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSPTLEYGVH 550

Query: 431 LLSQAKE 437
             SQA E
Sbjct: 551 GSSQAVE 557



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 150/342 (43%), Gaps = 40/342 (11%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           + ++ G  A  KL +T+I T  + G+++    +F      G    V+++ A+I    + G
Sbjct: 168 IWKQNGRIAKGKLVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNG 227

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV--HPVDPDH 234
             + A   +  MRS  V P+ + +N+LI A G  G VD  FDV+ +   E+    + PD 
Sbjct: 228 HFSDAVDLFRSMRSWGVYPNLISYNSLIDA-GAKGEVD--FDVVVKFFDEMLAEGIVPDR 284

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T  +L+  CA+ G                                    WE A  +  +
Sbjct: 285 LTYNSLLSVCASKGM-----------------------------------WETAQKLLSE 309

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M +KG++ D    +  +D     G+++ A  +L+E  ++ +   +++YS+++  C+ A  
Sbjct: 310 MDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANL 369

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            + AL LYE MK   +     + N ++       +  + +    +M+S G+  + +TY+ 
Sbjct: 370 LEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNA 429

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           LL    R    +    L  + K   + PN + +  +I + ++
Sbjct: 430 LLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTK 471



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
           + D +++       GH       F+ +   +N  I+ G +  S+++G          AL 
Sbjct: 141 VEDYIYMLKEFGNTGHFLLATKCFDFIIWKQNGRIAKGKL-VSTMIGTLGRLGEINHALR 199

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           L+E  +      TV + +A+I+A          +++   M+S G+ PN I+Y+ L+ A  
Sbjct: 200 LFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGA 259

Query: 421 RKD-DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 464
           + + D +V +    +   +G++P+ + +  ++ +C+ +  +E A+ L
Sbjct: 260 KGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKL 306


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 174/369 (47%), Gaps = 10/369 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT ++FN+LM+  +     E A +VL  ++E+        Y T +    KSG      +V
Sbjct: 134 PTETSFNVLMAAYSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDV 193

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM N G+ P V+T+  +I+   KA   AKA   +  MR     P    + ALI A  +
Sbjct: 194 FREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAR 253

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G   RA ++ AE+ + V  V PD  T  AL++A +  G    A+EV++ + +  +K   
Sbjct: 254 EGNCVRAEEIFAELQS-VGFV-PDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADH 311

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFE 325
             Y I I+   + G    A ++YD M K G  P      + LSA +     AG+V  A  
Sbjct: 312 VSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVK----AGRVTDAEN 367

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            ++  ++ G+      ++SL+GA  N+    K   LYE M+    KP + T+N LI    
Sbjct: 368 FVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYA 427

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
            G  + +  E+ + ++S G  P+ ++++ L+ A  ++      + +  +    G IP+  
Sbjct: 428 QGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYRKCVSVYQKMLIAGCIPDRA 487

Query: 446 MFKCIIGMC 454
             K ++  C
Sbjct: 488 TAKVLLSSC 496



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 11/251 (4%)

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           HAR  N  ++++   E  +    VP+  + T+N L+   +      GA +V   + EAG+
Sbjct: 251 HAREGNCVRAEEIFAE-LQSVGFVPD--IYTYNALLEAYSRGGHPAGAKEVFETMLEAGV 307

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
           KAD   Y  LI    ++G +     ++  M   G +P + ++  L+    KAG+V  A  
Sbjct: 308 KADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAEN 367

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
               + S  V+PD  +FN+L+ A G SG +D+   +   M   V    PD IT+  L+  
Sbjct: 368 FVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSV--CKPDIITLNTLINV 425

Query: 244 CANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGV 300
            A  G ++RA E++  +     KG TP+V  +T  +   S+   +    SVY  M   G 
Sbjct: 426 YAQGGYIERAEEIFNSLES---KGFTPDVMSWTSLMGAYSKRKLYRKCVSVYQKMLIAGC 482

Query: 301 IPDEVFLSALI 311
           IPD      L+
Sbjct: 483 IPDRATAKVLL 493



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/413 (21%), Positives = 168/413 (40%), Gaps = 31/413 (7%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           ++Q +  K D   +  L+    ++ +       FH M      P   ++  L+   ++ G
Sbjct: 91  ILQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGG 150

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           Q+ +A      M+  N  P  V +N  +    +SG+   A DV  EM     P  P   T
Sbjct: 151 QLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVP--PAVNT 208

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              ++     A    +A  +++ + K     +   YT  IN  ++ G+   A  ++ ++ 
Sbjct: 209 FTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQ 268

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
             G +PD    +AL++     G    A E+ +     G+    +SY+ L+ A   A    
Sbjct: 269 SVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLIS 328

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            A  +Y+ MK +  KPT+ +   L++A     ++      +  ++S+G+ P+T  ++ LL
Sbjct: 329 DAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLL 388

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 476
            A      ++    L    +     P+++    +I +    Y +   +      FNS   
Sbjct: 389 GAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINV----YAQGGYIERAEEIFNS--- 441

Query: 477 QIENK--------WTSLA------------LMVYREAIVAGTIPTVEVVSKVL 509
            +E+K        WTSL             + VY++ ++AG IP     +KVL
Sbjct: 442 -LESKGFTPDVMSWTSLMGAYSKRKLYRKCVSVYQKMLIAGCIPD-RATAKVL 492



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 18/231 (7%)

Query: 7   NMLQFPYPNGKHANYAHDVSEQL--------H-SYNRLI----RQGRISECIDLLEDMER 53
           N L   Y  G H   A +V E +        H SYN LI    R G IS+   + + M++
Sbjct: 280 NALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKK 339

Query: 54  KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSE 109
            G     K  H    +       + +A  F + + +    P    FN L+    +S   +
Sbjct: 340 VGFKPTMKS-HILLLSAFVKAGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMD 398

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
               +   +Q +  K D     TLI   A+ G ++   E+F+ + + G  P+V ++ +L+
Sbjct: 399 KMESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLM 458

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
              +K     K    Y  M      PDR     L+++C     V    D++
Sbjct: 459 GAYSKRKLYRKCVSVYQKMLIAGCIPDRATAKVLLSSCRGPEQVKEVTDMI 509


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 211/495 (42%), Gaps = 72/495 (14%)

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVL 115
            +K+ HA    +CK    ++    F K++     P L TFN+ +         + A ++L
Sbjct: 298 FNKLVHA----LCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLL 353

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
             V   GL+ D   Y T+I    +  +V    E  H+MVN G EPN  TY ++IDG  K 
Sbjct: 354 GCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKK 413

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G V  A         K  KPD   + +L+    Q G  D+A  V  +   +   + P  I
Sbjct: 414 GMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGK--GLRPSII 471

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
               L+K     G +  A ++   + +   K     Y + IN   + G    A  +  D 
Sbjct: 472 VYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDA 531

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKN 354
             KG IPD    + L+D      K+++A E++    +QG++  +I+Y++L+ G C  AK+
Sbjct: 532 ITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKS 591

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN------ 408
            ++ +E+++ M      P + T N +I +LC+  ++ + +++L +MKS GL P+      
Sbjct: 592 -EEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGT 650

Query: 409 ------------------------------TITYSILLVACERKDDVEVGLMLLSQAKED 438
                                         T TY+I++ A   + ++++ L L S+ K++
Sbjct: 651 LITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKN 710

Query: 439 GVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 497
           G  P+   ++ +I G C     K   +N+                         E I  G
Sbjct: 711 GCDPDNYTYRVLIDGFC-----KTGNVNQ-------------------GYKFLLENIEKG 746

Query: 498 TIPTVEVVSKVLGCL 512
            IP++    +VL CL
Sbjct: 747 FIPSLTTFGRVLNCL 761



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 187/433 (43%), Gaps = 14/433 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   L ++N  I    ++G +   + LL  + R+GL      Y+     +C+  + ++  
Sbjct: 326 VCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAE 385

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               K+V     P   T+N ++           A ++L+     G K D   Y +L+   
Sbjct: 386 ECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGF 445

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            + G  D    VF + +  G+ P++  Y  LI G  + G +  A      M  K  KPD 
Sbjct: 446 CQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDI 505

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             +N +I    + G +  A  ++ +  A      PD  T   L+       ++D A E+ 
Sbjct: 506 WTYNLIINGLCKMGCLSDANHLIGD--AITKGCIPDIFTYNTLVDGYCRQLKLDSAIELV 563

Query: 258 KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
             +    +  TP+V  Y   +N   +T   E    ++  MT+KG  P+ +  + +I+   
Sbjct: 564 NRMWSQGM--TPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLC 621

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTV 374
           ++ KV  A ++L E K++G++  ++S+ +L+       +   A  L+  M K   +  T 
Sbjct: 622 NSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTT 681

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           +T N +I+A  +   +   + + S+MK  G  P+  TY +L+    +  +V  G   L +
Sbjct: 682 ATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLE 741

Query: 435 AKEDGVIPNLVMF 447
             E G IP+L  F
Sbjct: 742 NIEKGFIPSLTTF 754



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 157/372 (42%), Gaps = 10/372 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N   + G   + + + +D   KGL     VY+     +C+ Q  I  A +    +     
Sbjct: 443 NGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQ-QGLILPALQLMNEMAEKGC 501

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N++++          A  ++      G   D   Y TL+    +  K+D+  E
Sbjct: 502 KPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIE 561

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           + + M + G+ P+V TY  L++G  K  +  +    +  M  K   P+ + +N +I +  
Sbjct: 562 LVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLC 621

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-YNIKG 267
            S  V+ A D+L EM ++   + PD ++ G L+      G +D A  +++ + K Y++  
Sbjct: 622 NSKKVNEAVDLLGEMKSK--GLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSH 679

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   Y I I+  S+  + + A  ++ +M K G  PD      LID     G V   ++ L
Sbjct: 680 TTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFL 739

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E   +G    + ++  ++         Q+A+ +   M    + P   T+N +  A   G
Sbjct: 740 LENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVP--DTVNTIFEADKKG 797

Query: 388 DQLPKTMEVLSD 399
                  E L D
Sbjct: 798 HITYHAYEFLYD 809



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 122/273 (44%), Gaps = 4/273 (1%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            + +++   G  G  +   ++L+EM + +     + + + A M+     G++  A + ++
Sbjct: 121 TYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEA-MRFYGRKGKIQEAVDTFE 179

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +  +N   +   Y   +N   + G +  A  VY  M  K V  D    +  I      G
Sbjct: 180 RMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTG 239

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +  AA  +L+     G     ++Y +++       +  +A EL++ M    L P V+T N
Sbjct: 240 RPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFN 299

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            L+ ALC    + ++  +   +   G+CPN  T++I +    ++  ++  + LL     +
Sbjct: 300 KLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSRE 359

Query: 439 GVIPNLVMFKCII-GMC--SRRYEKARTLNEHV 468
           G+ P++V +  +I G+C  SR  E    L++ V
Sbjct: 360 GLRPDVVTYNTVICGLCRKSRVVEAEECLHKMV 392



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 81/411 (19%), Positives = 172/411 (41%), Gaps = 17/411 (4%)

Query: 53  RKGLLDMDKVYHARFFNVC-KSQKAIKEAFRFFKLVPNPTLSTF-NMLMSVCASSKDSEG 110
           R+   D+  V+  ++ +VC ++ + IK+  + FK     TL T+ +ML  +    K +E 
Sbjct: 83  RRTDRDLVDVFCMKYEDVCIRNLQLIKKTKQGFK----HTLFTYKSMLQKLGFHGKFNE- 137

Query: 111 AFQVLRLVQEAGLKADCKL----YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
              +  L+ E     D  L    Y   +    + GK+    + F  M     +P+V++Y 
Sbjct: 138 ---MENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKIQEAVDTFERMDLFNCDPSVYSYN 194

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           A+++   + G   +A   Y  M+ K V+ D   +   I +  ++G    A  +L  M   
Sbjct: 195 AIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNM--P 252

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
           V     + +    ++      G  DRARE++  + +  +      +   ++   + G   
Sbjct: 253 VLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVL 312

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            +  ++D + K+GV P+    +  I      G ++ A  +L     +G+   +++Y++++
Sbjct: 313 ESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVI 372

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                     +A E    M +   +P   T N++I   C    +     +L D    G  
Sbjct: 373 CGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFK 432

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
           P+  TY  L+    +  D +  + +       G+ P+++++  +I G+C +
Sbjct: 433 PDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQ 483



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/201 (22%), Positives = 92/201 (45%), Gaps = 12/201 (5%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I       +++E +DLL +M+ KGL      +       CK    +  A+  F+ 
Sbjct: 612 TYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGD-LDGAYGLFRG 670

Query: 87  VPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +        T +T+N+++S  +   + + A ++   +++ G   D   Y  LI    K+G
Sbjct: 671 MEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTG 730

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            V+  ++   E +  G  P++ T+G +++      +V +A G   +M  K++ PD V  N
Sbjct: 731 NVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDTV--N 788

Query: 202 ALITACGQSGAVDRAFDVLAE 222
            +  A  +      A++ L +
Sbjct: 789 TIFEADKKGHITYHAYEFLYD 809


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 180/362 (49%), Gaps = 7/362 (1%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P   T+  L++ +CA S+        L L+ E GL  D  ++    +  AK G +D   +
Sbjct: 275 PDCYTYGSLLNYLCALSE----MHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMD 330

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F++M   G+ PNV  YGALID   K G+V  A   +  M ++ V P+ VVFN+L+    
Sbjct: 331 IFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLC 390

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                +RA +++ EM  +   + P+ +    L+    N G+V   R +  ++    ++  
Sbjct: 391 TVDKWERAEELVYEMLDQ--GICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPD 448

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  I+     G  + A  V+D M   G+ P EV  + L+     A +++ A+ + +
Sbjct: 449 AFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFR 508

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   +G++ G+++Y++++      K + +A ELY +M +   K  + T N ++  LC  +
Sbjct: 509 EMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSN 568

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            + +  ++   + S GL  N IT++I++ A  +    E  + L +    +G++PN+V ++
Sbjct: 569 CVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYR 628

Query: 449 CI 450
            +
Sbjct: 629 LV 630



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 199/450 (44%), Gaps = 18/450 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF-----RFFKLVPN 89
           L R GR+         + + G    D V +     +C  ++ + EA      R  +L   
Sbjct: 108 LCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKR-VGEAMDVLLQRMPELGCT 166

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTTLITTCAKSGKVDAM 146
           P   ++++L+    +   +E A ++LR++     ++   +   YTT+I    K+   D  
Sbjct: 167 PDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRA 226

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             VF +M++ G++PN  TY  LI G    G+  +       M ++ +KPD   + +L+  
Sbjct: 227 EGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNY 286

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                 +    D++ E     + + PDH        A A  G +D+A +++  + ++ + 
Sbjct: 287 LCALSEMHSFLDLMVE-----NGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLS 341

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y   I+   + G  + A   ++ M  +GV P+ V  ++L+       K E A E+
Sbjct: 342 PNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEEL 401

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           + E  +QGI    + +++L+    N     +   L + M+ + ++P   +   LI+  C 
Sbjct: 402 VYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCL 461

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +  +  +V   M S+GL P  +TY+ LL        ++    L  +    GV P +V 
Sbjct: 462 AGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVT 521

Query: 447 FKCII-GMC-SRRYEKARTLNEHVLSFNSG 474
           +  I+ G+  ++R+ +A+ L  +++  NSG
Sbjct: 522 YNTILHGLFQTKRFSEAKELYLNMI--NSG 549



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 147/327 (44%), Gaps = 18/327 (5%)

Query: 149 VFHEMV---NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
           +F+ MV   +  + PN  TY  LI    + G++  +F  +G++     + + +V N L+ 
Sbjct: 82  LFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLK 141

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
                  V  A DVL +   E+    PD ++   L+K   N  + + A E+ +M+   + 
Sbjct: 142 GLCDGKRVGEAMDVLLQRMPEL-GCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHG 200

Query: 266 KGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           +  P     YT  I+   +   ++ A  V+  M   GV P+    + LI      GK + 
Sbjct: 201 RSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKE 260

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
             ++L++   +G+     +Y SL+            L+L   M    L P     N   +
Sbjct: 261 VVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDL---MVENGLSPDHHIFNIFFS 317

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE--RKDDVEVGLMLLSQAKEDG 439
           A      + K M++ + M+  GL PN + Y  L+ A C+  R DD EV     +Q   +G
Sbjct: 318 AYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK---FNQMINEG 374

Query: 440 VIPNLVMFKCII-GMCS-RRYEKARTL 464
           V PN+V+F  ++ G+C+  ++E+A  L
Sbjct: 375 VTPNIVVFNSLVYGLCTVDKWERAEEL 401



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 160/394 (40%), Gaps = 57/394 (14%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQK 75
           H +S  + +Y  LI    + GR+ +       M  +G+     V+++  + +C   K ++
Sbjct: 338 HGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWER 397

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           A +  +        P    FN L+ ++C   +  EG  +++ L++  G++ D   YT LI
Sbjct: 398 AEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGR-RLIDLMEHVGVRPDAFSYTPLI 456

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +    +G+ D   +VF  MV+ G+ P   TY  L+ G   A ++  A+  +  M  K V 
Sbjct: 457 SGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVT 516

Query: 195 PDRVVFNALI-----------------------TACG------------QSGAVDRAFDV 219
           P  V +N ++                       T C             +S  VD AF +
Sbjct: 517 PGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKM 576

Query: 220 LAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
              + ++   ++     I IGAL+K     G+ + A +++  I    +      Y +   
Sbjct: 577 FQSLCSKGLQLNIITFTIMIGALLKG----GRKEDAMDLFAAIPANGLVPNVVTYRLVAE 632

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
              + G  E   S++  M K G  P+   L+AL+    H G +  A   L +   +  SV
Sbjct: 633 NLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSV 692

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
              S +SL+ +   +  +Q       H KS+  K
Sbjct: 693 E-ASTTSLLISIFTSDEYQ------HHAKSLPEK 719


>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
 gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
 gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 171/368 (46%), Gaps = 3/368 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L+S        + A ++   ++E GL+   K+YTTL+    K GKV+    +
Sbjct: 229 PDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNL 288

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            HEM      P V+TY  LI G  K+G+V  A+G Y  M     KPD V+ N LI   G+
Sbjct: 289 VHEMRMRRCVPTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGR 348

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC-ANAGQVDRAREVYKMIHKYNIKGT 268
           S  +  A ++  EM   +    P+ +T   ++K+   +      A    + + K  +  +
Sbjct: 349 SDRLKEAVELFEEM--RLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPS 406

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+I I+   +T   E A  + ++M +KG  P      +LI+  G A + EAA E+ Q
Sbjct: 407 SFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQ 466

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E K    S  +  Y+ ++        + +A+ L+  MK +   P V   NALIT +   D
Sbjct: 467 ELKENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRAD 526

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            + +   +   M+  G  P+  +++I+L    R    +  + + ++ K   + P+ V + 
Sbjct: 527 MMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYN 586

Query: 449 CIIGMCSR 456
            ++G  SR
Sbjct: 587 TVLGCLSR 594



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 183/404 (45%), Gaps = 14/404 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIK--EAF 81
           +Y+ LI    +  R    + L ++M+  GL    K+Y      +F + K ++A+      
Sbjct: 233 TYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEM 292

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R  + VP  T+ T+  L+     S   E A+ V + + + G K D  L   LI    +S 
Sbjct: 293 RMRRCVP--TVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSD 350

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRSKNVKPDRVVF 200
           ++    E+F EM      PNV TY  +I    +     ++A      M+   V P    +
Sbjct: 351 RLKEAVELFEEMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTY 410

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + LI    ++  V++A  +L EM+ +  P  P      +L+ +   A + + A E+++ +
Sbjct: 411 SILIDGFCKTNRVEKALLLLEEMDEKGFP--PCPAAYCSLINSLGKAKRYEAANELFQEL 468

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            +     +  VY + I    + G +  A  ++++M K G IPD    +ALI     A  +
Sbjct: 469 KENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMM 528

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + AF + +  +  G +  I S++ ++   +     ++A+E++  MKS  +KP   + N +
Sbjct: 529 DEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTV 588

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           +  L       +  +++ +M S G   + ITYS +L A  + D+
Sbjct: 589 LGCLSRAGLFEEATKLMKEMNSKGFEYDLITYSSILEAVGKVDE 632



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 12/225 (5%)

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           +D   I I  + K   +A   ++A EV K+  K +I+   EV  I +    +   +++A 
Sbjct: 62  LDERFIRILKIFKWGPDA---EKALEVLKL--KLDIRLVREVLKIDVEVHVKIQFFKWAG 116

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
                  K+    D     ALI        V   +  +Q+      ++G    S ++   
Sbjct: 117 K------KRNFEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKIL 170

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PN 408
              K   KAL ++  +K  K +PT  T N++I  L       K  E+ ++M S G C P+
Sbjct: 171 GRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPD 230

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           T+TYS L+ A  + +  +  + L  + KE+G+ P   ++  ++G+
Sbjct: 231 TVTYSALISAFGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGI 275


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 198/426 (46%), Gaps = 7/426 (1%)

Query: 40  RISECIDLLEDM----ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RISE + L++ M     +   +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 165 RISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTY 223

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
             +++      D + A  +L+ +++  ++AD  +YTT+I        V+    +F EM N
Sbjct: 224 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN 283

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            GI PNV TY +LI      G+ + A      M  + + P+ V F+ALI A  + G +  
Sbjct: 284 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 343

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  +  EM      +DPD  T  +L+       ++D A+ +++++   +       Y   
Sbjct: 344 AEKLYDEMIK--RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I    +    E    ++ +M+++G++ + V  + LI     AG  + A +I ++  + G+
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              II+YS L+         +KAL ++E+++  K++P + T N +I  +C   ++    +
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           +   +   G+ PN I Y+ ++    RK   E    L  + KEDG +PN   +  +I    
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581

Query: 456 RRYEKA 461
           R  +KA
Sbjct: 582 RDGDKA 587



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 199/442 (45%), Gaps = 14/442 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  L+SYN LI    R+ ++   + +L  M + G  + D V  +   N     K I EA
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGY-EPDIVTLSSLLNGYCHGKRISEA 169

Query: 81  F----RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
                + F +   P   TFN L+  +   +K SE    + R+V   G + D   Y T++ 
Sbjct: 170 VALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVN 228

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K G +D    +  +M    IE +V  Y  +ID       V  A   +  M +K ++P
Sbjct: 229 GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRP 288

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + V +N+LI      G    A  +L++M      ++P+ +T  AL+ A    G++  A +
Sbjct: 289 NVVTYNSLIRCLCNYGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKLVEAEK 346

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +Y  + K +I      Y+  IN        + A  +++ M  K   P+ V  + LI    
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 406

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            A +VE   E+ +E   +G+    ++Y++L+     A +   A ++++ M S  + P + 
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T + L+  LC   +L K + V   ++   + P+  TY+I++    +   VE G  L    
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 436 KEDGVIPNLVMFKCII-GMCSR 456
              GV PN++++  +I G C +
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRK 548



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 170/418 (40%), Gaps = 39/418 (9%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P++  FN L+S  A     +    +   +Q   +  D   Y  LI    +  ++    
Sbjct: 76  PLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLAL 135

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            V  +M+  G EP++ T  +L++G     ++++A      M     +P+ V FN LI   
Sbjct: 136 AVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGL 195

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
                   A  ++  M A      PD  T G ++      G +D A  + K + K  I+ 
Sbjct: 196 FLHNKASEAVALIDRMVA--RGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEA 253

Query: 268 TPEVYTIAIN-----------------------------------CCSQTGDWEFACSVY 292
              +YT  I+                                   C    G W  A  + 
Sbjct: 254 DVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 313

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            DM ++ + P+ V  SALID     GK+  A ++  E   + I   I +YSSL+      
Sbjct: 314 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 373

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
               +A  ++E M S    P V T N LI   C   ++ + ME+  +M   GL  NT+TY
Sbjct: 374 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 433

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
           + L+    +  D ++   +  +   DGV P+++ +  ++ G+C   + EKA  + E++
Sbjct: 434 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 172/403 (42%), Gaps = 38/403 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I   + LL+ ME KG ++ D V +    +   + K + +A   F  + N   
Sbjct: 228 NGLCKRGDIDLALSLLKKME-KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 286

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N L+    +      A ++L  + E  +  +   ++ LI    K GK+    +
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 346

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ EM+   I+P++ TY +LI+G     ++ +A   + +M SK+  P+ V +N LI    
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 406

Query: 209 QSGAVDRAFDVLAEMNAE---------------------------------VHPVDPDHI 235
           ++  V+   ++  EM+                                      V PD I
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+      G++++A  V++ + K  ++     Y I I    + G  E    ++  +
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
           + KGV P+ +  + +I      G  E A  + +E K  G      +Y++L+ A     + 
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDK 586

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
             + EL + M+S       ST++ +I  L DG      +E+LS
Sbjct: 587 AASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEMLS 629


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 221/492 (44%), Gaps = 29/492 (5%)

Query: 77  IKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           + EAFR F+ +       P   T+++L+     +   E AFQ+ + + E G +   + YT
Sbjct: 245 LGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 304

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            LI      G  D   ++  EM      PNVHTY  LID   + G++ +A G +  M   
Sbjct: 305 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKH 364

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + P  + FNALI    + G V  AF +L+ M  E     P+  T   LM+      +  
Sbjct: 365 GLCPGIITFNALINGYCKEGWVVSAFQLLSVM--EKGNCKPNIRTYNELMEGLCRVSKSY 422

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +A  + + +    +      Y I ++   + G    A ++++ M   G+ PD    +ALI
Sbjct: 423 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 482

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D     G++E A  IL     +GIS+  +++++L+         +    L+E+M   +  
Sbjct: 483 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 542

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
            T  T N  + AL    +L +   +L  M   GL P+ +T++IL+    R  +  + L +
Sbjct: 543 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 602

Query: 432 LSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 489
           L + K+ G  PN+  +  II G+C+  R E+A T+   + SF        N +T   L+ 
Sbjct: 603 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVS----PNHFTYAVLV- 657

Query: 490 YREAIVAGTIP-TVEVVSKVL--GCL--QLPYNADIRERLVENLGVSADALKRSNLCSLI 544
            +  + AG +    ++VS ++  GC      Y+A +   ++ N  + A AL  +      
Sbjct: 658 -KAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSST------ 710

Query: 545 DGFGEYDPRAFS 556
              G+ D R+ S
Sbjct: 711 ---GDLDARSLS 719



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 178/412 (43%), Gaps = 5/412 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPNPT 91
           L   GR+ E   L ++M  KG     + Y       C    + KA+K           P 
Sbjct: 275 LCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPN 334

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+ +L+         E A  V R + + GL      +  LI    K G V + F++  
Sbjct: 335 VHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLS 394

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M     +PN+ TY  L++G  +  +  KAF     +    + PDRV +N L+    + G
Sbjct: 395 VMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEG 454

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ AF++   MN+    ++PD  T  AL+      G++++A  +   + K  I      
Sbjct: 455 QLNMAFNIFNSMNSA--GLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVT 512

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +T  I+   + G  +  C ++++M +   +      +  +D  G   K+  A  +L +  
Sbjct: 513 FTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMM 572

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+   +++++ L+     A     +L++ E MK     P V T   +I  LC+  ++ 
Sbjct: 573 KYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVE 632

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           +   +L  M S G+ PN  TY++L+ A  +   ++    ++S   ++G  PN
Sbjct: 633 EAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPN 684



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 168/367 (45%), Gaps = 15/367 (4%)

Query: 28  QLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +H+Y    +RL R+G+I E   +   M + GL      ++A     CK +  +  AF+ 
Sbjct: 334 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK-EGWVVSAFQL 392

Query: 84  FKLVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             ++      P + T+N LM  +C  SK S  AF +LR V + GL  D   Y  L+    
Sbjct: 393 LSVMEKGNCKPNIRTYNELMEGLCRVSK-SYKAFLLLRRVVDNGLLPDRVTYNILVDGFC 451

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G+++  F +F+ M +AG+EP+  T+ ALIDG  K G++ +A G  G M  K +  D V
Sbjct: 452 KEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEV 511

Query: 199 VFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
            F ALI   C    A D  F  L E   E   +   H T    + A     +++ A  + 
Sbjct: 512 TFTALIDGHCKIGKAKDVCF--LFENMVENRCLTTAH-TFNCFLDALGKDYKLNEANAML 568

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             + KY +  +   +TI I    + G+   +  + + M + G  P+    + +I+   + 
Sbjct: 569 GKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNN 628

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+VE A  IL    + G+S    +Y+ L+ A   A    +A ++   M     +P     
Sbjct: 629 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 688

Query: 378 NALITAL 384
           +AL++  
Sbjct: 689 SALLSGF 695



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 12/350 (3%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           AF V R +   G       Y T++    K+G V A      +++  G   + H   +L+ 
Sbjct: 178 AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVL 237

Query: 171 GCAKAGQVAKAFGAYGIM-RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
              +   + +AF  +  M + +N +P+ V ++ LI    ++G ++ AF +  EM  +   
Sbjct: 238 ANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEK--G 295

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWE 286
             P   T   L+KA  + G  D+A    KM+ +   K   P V  YTI I+   + G  E
Sbjct: 296 CQPSTRTYTVLIKAKCDIGMTDKA---MKMLDEMATKACVPNVHTYTILIDRLCREGKIE 352

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  V+  M K G+ P  +  +ALI+     G V +AF++L   +       I +Y+ LM
Sbjct: 353 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELM 412

Query: 347 -GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
            G C  +K++ KA  L   +    L P   T N L+   C   QL     + + M S GL
Sbjct: 413 EGLCRVSKSY-KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL 471

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            P+  T++ L+    +   +E    +L    + G+  + V F  +I G C
Sbjct: 472 EPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 521



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 157/350 (44%), Gaps = 11/350 (3%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG- 176
           + E G +     Y+TL+   AK       F V+  MVN G       Y  +++   K G 
Sbjct: 150 MTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGF 209

Query: 177 -QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            Q A+ F    ++R      D  V  +L+ A  +   +  AF V  +M+ E     P+ +
Sbjct: 210 VQAAEMF-CCKVLRL-GFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKE-ENCRPNSV 266

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+     AG+++ A ++ + + +   + +   YT+ I      G  + A  + D+M
Sbjct: 267 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 326

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKN 354
             K  +P+    + LID     GK+E A  + ++    G+  GII++++L+ G C   + 
Sbjct: 327 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK--EG 384

Query: 355 WQ-KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           W   A +L   M+    KP + T N L+  LC   +  K   +L  +   GL P+ +TY+
Sbjct: 385 WVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYN 444

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 461
           IL+    ++  + +   + +     G+ P+   F  +I G+C   R E+A
Sbjct: 445 ILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQA 494


>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
           C-169]
          Length = 1226

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 165/343 (48%), Gaps = 12/343 (3%)

Query: 44  CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           C  LL+++ R GL    +     FF+   +     EA R   +       T+   +S+C 
Sbjct: 98  CAALLKELARTGLAHRAQ----EFFDHVLALGDSTEAARLADVY------TYTAAISICV 147

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
           S++  E A ++   +Q  G++ +   ++ L+  C K G++    +V+ +M   GI PNV 
Sbjct: 148 SAQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVWEDMQRDGIVPNVV 207

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           TY  LID   K GQ  +A      M+ + ++P    +N L+ AC  SG    A  +  EM
Sbjct: 208 TYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEM 267

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
            A  H ++    +  AL+ A + AG + +  + Y+ + +   + +   Y+  I+ C ++G
Sbjct: 268 RAAGHALNT--TSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSG 325

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           +W+ A   +D+  K    P+ +  ++LI       + E A E+ +  + QG +  +++Y+
Sbjct: 326 EWQLALRFFDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQGCTPDVVTYT 385

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +L+ A      WQ AL+ ++ M++   KP     NA+I  L D
Sbjct: 386 ALISAYERGGKWQLALQAFQAMQAKGCKPDSIVYNAIIDTLWD 428



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 147/332 (44%), Gaps = 37/332 (11%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           EA   AD   YT  I+ C  + +++   E+  +M   G++ NVHT+ AL++ C K GQ+ 
Sbjct: 129 EAARLADVYTYTAAISICVSAQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCGQLK 188

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            A   +  M+   + P+ V +N LI             DV  ++                
Sbjct: 189 LALDVWEDMQRDGIVPNVVTYNTLI-------------DVYGKL---------------- 219

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
                   GQ ++A +V + +    I+     Y   +  C+ +G W+ A  +Y++M   G
Sbjct: 220 --------GQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAG 271

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
              +    +ALI     AG +    +  ++   QG    +I+YSSL+ AC  +  WQ AL
Sbjct: 272 HALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLAL 331

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
             ++       +P V T N+LITA   G Q  K  E+   M+  G  P+ +TY+ L+ A 
Sbjct: 332 RFFDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQGCTPDVVTYTALISAY 391

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           ER    ++ L      +  G  P+ +++  II
Sbjct: 392 ERGGKWQLALQAFQAMQAKGCKPDSIVYNAII 423



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 143/271 (52%), Gaps = 6/271 (2%)

Query: 202 ALITACGQSGAVDRA---FD-VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           AL+    ++G   RA   FD VLA  ++       D  T  A +  C +A Q++RA E+ 
Sbjct: 100 ALLKELARTGLAHRAQEFFDHVLALGDSTEAARLADVYTYTAAISICVSAQQLERALELS 159

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             + +  ++     ++  +N C + G  + A  V++DM + G++P+ V  + LID  G  
Sbjct: 160 ADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVWEDMQRDGIVPNVVTYNTLIDVYGKL 219

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+ E A ++L+  K QGI     +Y++LM AC+ +  WQ AL+LYE M++       ++ 
Sbjct: 220 GQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSY 279

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           NALI+A      LP+ ++    M   G   + ITYS L+ ACE+  + ++ L    +  +
Sbjct: 280 NALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECLK 339

Query: 438 DGVIPNLVMFKCIIGMCSR--RYEKARTLNE 466
           D   PN++ F  +I  C++  ++EKAR L E
Sbjct: 340 DNCRPNVITFNSLITACAQGAQWEKARELFE 370



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 126/267 (47%), Gaps = 11/267 (4%)

Query: 25  VSEQLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   +H+++ L    I+ G++   +D+ EDM+R G++  + V +    +V       ++A
Sbjct: 167 VQRNVHTHSALMNVCIKCGQLKLALDVWEDMQRDGIVP-NVVTYNTLIDVYGKLGQWEQA 225

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            +  + +      P   T+N LM  C +S   + A Q+   ++ AG   +   Y  LI+ 
Sbjct: 226 LQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISA 285

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
            +K+G +  + + + +MV  G E +V TY +LI  C K+G+   A   +      N +P+
Sbjct: 286 HSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECLKDNCRPN 345

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            + FN+LITAC Q    ++A ++   M  +     PD +T  AL+ A    G+   A + 
Sbjct: 346 VITFNSLITACAQGAQWEKARELFELMQQQG--CTPDVVTYTALISAYERGGKWQLALQA 403

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTG 283
           ++ +     K    VY   I+    TG
Sbjct: 404 FQAMQAKGCKPDSIVYNAIIDTLWDTG 430



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 118/273 (43%), Gaps = 17/273 (6%)

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           D T+   + D    +A I     A ++E A E+  + + +G+   + ++S+LM  C    
Sbjct: 126 DSTEAARLADVYTYTAAISICVSAQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCG 185

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             + AL+++E M+   + P V T N LI       Q  + ++VL  MK  G+ P T TY+
Sbjct: 186 QLKLALDVWEDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYN 245

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH------ 467
            L++AC      +  L L  + +  G   N   +  +I   S+  +  + L+ +      
Sbjct: 246 TLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQ 305

Query: 468 -----VLSFNSGRPQIE--NKWTSLALMVYREAIVAGTIPTVEVV-SKVLGCLQLPYNAD 519
                V++++S     E   +W  LAL  + E +     P V    S +  C Q      
Sbjct: 306 GCERSVITYSSLISACEKSGEW-QLALRFFDECLKDNCRPNVITFNSLITACAQGAQWEK 364

Query: 520 IRE--RLVENLGVSADALKRSNLCSLIDGFGEY 550
            RE   L++  G + D +  + L S  +  G++
Sbjct: 365 ARELFELMQQQGCTPDVVTYTALISAYERGGKW 397


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 187/423 (44%), Gaps = 38/423 (8%)

Query: 70  VCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           +C   K  +      ++V N   P + T+N +++    S D+  A  +LR + E  +KAD
Sbjct: 145 LCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKAD 204

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y+T+I +  + G +DA   +F EM   GI+ ++ TY +L+ G  KAG+         
Sbjct: 205 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLK 264

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP---------------- 229
            M S+ + P+ + FN LI    + G +  A ++  EM  + + P                
Sbjct: 265 DMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQN 324

Query: 230 ----------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
                             PD +T  +L+K      +VD   ++++ I K  +      Y+
Sbjct: 325 RLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYS 384

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I +    Q+G  E A  ++ +M   GV+PD +    L+D     GK+E A EI ++ +  
Sbjct: 385 ILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKS 444

Query: 334 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            +++ I+ Y+ ++ G C   K  + A  L+  +    +KP V T   +I+ LC    L +
Sbjct: 445 KMNLDIVMYTIIIEGMCKGGK-VEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSE 503

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
              +L  M+  G  PN  TY+ L+ A  R  D+     L+ + K  G   +    K +I 
Sbjct: 504 ANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 563

Query: 453 MCS 455
           M S
Sbjct: 564 MLS 566



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 191/454 (42%), Gaps = 48/454 (10%)

Query: 25  VSEQLHSYNRLIRQGRIS----ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S+    Y   +R G +     + IDL ++M R   L    V  +RFF+   S K     
Sbjct: 26  ISDGRVCYGERLRSGIVDIKEDDAIDLFQEMIRSRPLP-SLVDFSRFFSGVASTKQFNLV 84

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             F K +        + T N++++       +  A+ VL  V + G + D   + TLI  
Sbjct: 85  LDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLING 144

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
                KV     +   MV  G +PNV TY ++++G  K+G  + A      M  +NVK D
Sbjct: 145 LCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKAD 204

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
              ++ +I +  + G +D A  +  EM  E   +    +T  +L+     AG+       
Sbjct: 205 VFTYSTIIDSLCRDGCIDAAISLFKEM--ETKGIKSSLVTYNSLVGGLCKAGK------- 255

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
                                       W     +  DMT + +IP+ +  + LID    
Sbjct: 256 ----------------------------WNDGVQLLKDMTSRKIIPNVITFNVLIDVFVK 287

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            GK++ A E+ +E   +GIS   I+Y+SLM          +A  + + M      P + T
Sbjct: 288 EGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVT 347

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
             +LI   C   ++ + M++   +   GL  NT+TYSIL+    +   +E+   L  +  
Sbjct: 348 FTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMV 407

Query: 437 EDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
             GV+P+++ +  ++ G+C   + EKA  + E +
Sbjct: 408 SLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 441



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 155/342 (45%), Gaps = 13/342 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +   L +YN L+    + G+ ++ + LL+DM  + ++     ++    +V   +  ++EA
Sbjct: 236 IKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNV-LIDVFVKEGKLQEA 294

Query: 81  FRFFKLVP----NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
              +K +     +P   T+N LM   C  ++ SE A  +L L+       D   +T+LI 
Sbjct: 295 NELYKEMITKGISPNTITYNSLMDGYCMQNRLSE-ANNMLDLMVRNNCSPDIVTFTSLIK 353

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K  +VD   ++F ++   G+  N  TY  L+ G  ++G++  A   +  M S  V P
Sbjct: 354 GYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLP 413

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D + +  L+     +G +++A ++  ++      +D    TI  +++     G+V+ A  
Sbjct: 414 DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTI--IIEGMCKGGKVEDAWN 471

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           ++  +    +K     YT+ I+   + G    A  +   M + G  P++   + LI    
Sbjct: 472 LFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHL 531

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
             G + A+ ++++E K+ G S    S   ++   S+A  W K
Sbjct: 532 RDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLSSAVWWFK 573


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 199/428 (46%), Gaps = 9/428 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RF 83
           +YN LI    RQG + E  +L++ M  KGL      Y+A    +CK+ K ++        
Sbjct: 291 TYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM 350

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+  +P  +T+N+L+  C  + +   A ++   +   G+  D   ++ LI   +K+G +
Sbjct: 351 LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCL 410

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   + F +M NAG+ P+   Y  LI G  + G +++A      M  +    D V +N +
Sbjct: 411 DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTI 470

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +    +   +  A ++  EM      V PD  T   L+   +  G +++A  +++M+ + 
Sbjct: 471 LNGLCKEKMLSEADELFTEMTE--RGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQR 528

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           N+K     Y   I+   +  + E    +++DM  + + P+ +    LI+   + G V  A
Sbjct: 529 NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEA 588

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           F +  E   +G    II+ ++++     A N  KA E   +M    + P   T N LI  
Sbjct: 589 FRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLING 648

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
               + + +   +++ M++ GL P+ ITY+++L    R+  ++   +++ +  E GV P+
Sbjct: 649 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 708

Query: 444 LVMFKCII 451
              +  +I
Sbjct: 709 RSTYTSLI 716



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 156/323 (48%), Gaps = 2/323 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T N++++    ++  E     L  ++E G+  D   Y TLI    + G ++  FE+   M
Sbjct: 256 TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM 315

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G++P V TY A+I+G  K G+  +A G    M    + PD   +N L+  C ++  +
Sbjct: 316 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 375

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A  +  EM ++   V PD ++  AL+   +  G +D+A + ++ +    +     +YT
Sbjct: 376 MDAERIFDEMPSQ--GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYT 433

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I I    + G    A  V D+M ++G + D V  + +++       +  A E+  E   +
Sbjct: 434 ILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTER 493

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+     ++++L+   S   N  KA+ L+E M    LKP V T N LI   C G ++ K 
Sbjct: 494 GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 553

Query: 394 MEVLSDMKSLGLCPNTITYSILL 416
            E+ +DM S  + PN I+Y IL+
Sbjct: 554 NELWNDMISRRIYPNHISYGILI 576



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 223/499 (44%), Gaps = 24/499 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP +  F++L+     ++      +  R+++  GL        +L+    K G VD  +E
Sbjct: 183 NPLV--FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWE 240

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ E+V +G++ NV+T   +I+   K  ++         M  K V PD V +N LI A  
Sbjct: 241 IYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC 300

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G ++ AF+++  M+ +   + P   T  A++      G+  RA+ V   + K  +   
Sbjct: 301 RQGLLEEAFELMDSMSGK--GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 358

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I +  C +  +   A  ++D+M  +GV+PD V  SALI      G ++ A +  +
Sbjct: 359 TATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFR 418

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + KN G++   + Y+ L+G         +AL++ + M        V T N ++  LC   
Sbjct: 419 DMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEK 478

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L +  E+ ++M   G+ P+  T++ L+    +  ++   + L     +  + P++V + 
Sbjct: 479 MLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYN 538

Query: 449 CII-GMC-SRRYEKARTLNEHVLSFNSGRPQIE-----NKWTSL-----ALMVYREAIVA 496
            +I G C     EK   L   ++S       I      N + ++     A  ++ E +  
Sbjct: 539 TLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEK 598

Query: 497 GTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGF--GEYD 551
           G   T+   + ++       NA   +  + N+   G+  D +  +   +LI+GF   E  
Sbjct: 599 GFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYN---TLINGFIKEENM 655

Query: 552 PRAFSLLEEAASFGIVPCV 570
            RAF+L+ +  + G++P V
Sbjct: 656 DRAFALVNKMENSGLLPDV 674



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 196/429 (45%), Gaps = 7/429 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L +  +I      L DME KG+   D V +    N    Q  ++EAF     +     
Sbjct: 262 NALCKNQKIENTKSFLSDMEEKGVFP-DVVTYNTLINAYCRQGLLEEAFELMDSMSGKGL 320

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N +++    +     A  VL  + + G+  D   Y  L+  C ++  +     
Sbjct: 321 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER 380

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM + G+ P++ ++ ALI   +K G + +A   +  M++  + PD V++  LI    
Sbjct: 381 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 440

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G +  A  V  EM  +   +D   +T   ++        +  A E++  + +  +   
Sbjct: 441 RNGVMSEALKVRDEMLEQGCVLDV--VTYNTILNGLCKEKMLSEADELFTEMTERGVFPD 498

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +T  IN  S+ G+   A ++++ M ++ + PD V  + LID      ++E   E+  
Sbjct: 499 FYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWN 558

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +  ++ I    ISY  L+    N     +A  L++ M     + T+ T N ++   C   
Sbjct: 559 DMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG 618

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              K  E LS+M   G+ P+ ITY+ L+    ++++++    L+++ +  G++P+++ + 
Sbjct: 619 NAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYN 678

Query: 449 CIIGMCSRR 457
            I+   SR+
Sbjct: 679 VILNGFSRQ 687



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 136/310 (43%), Gaps = 44/310 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R G +SE + + ++M  +G + +D V +    N    +K + EA   F  +      P  
Sbjct: 441 RNGVMSEALKVRDEMLEQGCV-LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 499

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            TF  L++  +   +   A  +  ++ +  LK D   Y TLI    K  +++ + E++++
Sbjct: 500 YTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWND 559

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY--------------------GIMRSKN 192
           M++  I PN  +YG LI+G    G V++AF  +                    G  R+ N
Sbjct: 560 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 619

Query: 193 ---------------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
                          + PD + +N LI    +   +DRAF ++ +M  E   + PD IT 
Sbjct: 620 AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM--ENSGLLPDVITY 677

Query: 238 GALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             ++   +  G++  A  +  KMI +  +      YT  IN      + + A  V+D+M 
Sbjct: 678 NVILNGFSRQGRMQEAELIMLKMIER-GVNPDRSTYTSLINGHVTQNNLKEAFRVHDEML 736

Query: 297 KKGVIPDEVF 306
           ++G +PD+ F
Sbjct: 737 QRGFVPDDKF 746



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 36/243 (14%)

Query: 250 VDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           V R   V  ++  Y N    P V+ + +    Q       C  +  +  KG+       +
Sbjct: 164 VSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACN 223

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVG------------------------------ 338
           +L+      G V+ A+EI QE    G+ V                               
Sbjct: 224 SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEK 283

Query: 339 -----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
                +++Y++L+ A       ++A EL + M    LKP V T NA+I  LC   +  + 
Sbjct: 284 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 343

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
             VL +M  +G+ P+T TY+ILLV C R D++     +  +    GV+P+LV F  +IG+
Sbjct: 344 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 403

Query: 454 CSR 456
            S+
Sbjct: 404 LSK 406


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 185/424 (43%), Gaps = 5/424 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
            +R+G   E   ++++M   G+      Y      +CK  +  + +    ++V +   P 
Sbjct: 337 FMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPD 396

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+N+++         + AF++L  ++ AG+  +   Y+ +I    +SG+ +   ++  
Sbjct: 397 TITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLE 456

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   G++PN   Y  LI G  + G V+ A   +  M   NV PD   +N+LI    + G
Sbjct: 457 EMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 516

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V+ +    A+M  +   + P+  T   L+      G ++ A ++ + +    +K    +
Sbjct: 517 RVEESTKYFAQM--QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 574

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +    ++ D E   S +  M  +GV+ D      LI     +G +EAAF +L   +
Sbjct: 575 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIE 634

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G    +  YSSL+       + +KA  + + M    + P +   NALI  LC    + 
Sbjct: 635 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 694

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               V + + + GL PN +TY+ L+    +  D+     L ++    G+ P+  ++  + 
Sbjct: 695 YARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLT 754

Query: 452 GMCS 455
             CS
Sbjct: 755 TGCS 758



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 188/417 (45%), Gaps = 21/417 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDM----ERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           +Y+ L+R     G++     LL+ M     R   +  + +    F +  K     K+AFR
Sbjct: 364 TYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSK-----KDAFR 418

Query: 83  FFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
               + N    P + T+++++     S + E A  +L  +   GLK +  +Y  LI+   
Sbjct: 419 LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 478

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           + G V    E+F +M    + P+++ Y +LI G +K G+V ++   +  M+ + + P+  
Sbjct: 479 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEF 538

Query: 199 VFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
            ++ LI    ++G ++ A  ++  M +  + P D  +I    L+++   +  +++    +
Sbjct: 539 TYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID---LLESYFKSDDIEKVSSTF 595

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           K +    +     +Y I I+  S +G+ E A  V   + K G +PD    S+LI      
Sbjct: 596 KSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKT 655

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
              E AF IL E   +G+   I+ Y++L+     + +   A  ++  + +  L P   T 
Sbjct: 656 ADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTY 715

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            +LI   C    +     + ++M + G+ P+   YS+L   C    D+E  + L+ +
Sbjct: 716 TSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEE 772



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 144/596 (24%), Positives = 252/596 (42%), Gaps = 45/596 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAF 81
           +YN LI    R G + E     +DME  GL+     Y A    +CKS+     KA+ +  
Sbjct: 259 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM 318

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              +L PN  +  +  L+       +++ AF++++ +  AG++ +   Y  L+    K G
Sbjct: 319 SCAELKPN--VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMG 376

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++D    +  +MV     P+  TY  +I+G  +      AF     M +  + P+   ++
Sbjct: 377 QMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYS 436

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I    QSG  ++A D+L EM  +   + P+      L+      G V  A E++  + 
Sbjct: 437 IMIHGLCQSGEPEKASDLLEEMTTK--GLKPNAFVYAPLISGYCREGNVSLACEIFDKMT 494

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K N+      Y   I   S+ G  E +   +  M ++G++P+E   S LI      G +E
Sbjct: 495 KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLE 554

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           +A +++Q   + G+    + Y  L+ +   + + +K    ++ M    +         LI
Sbjct: 555 SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI 614

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             L     +     VLS ++  G  P+   YS L+    +  D E    +L +  + GV 
Sbjct: 615 HNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVD 674

Query: 442 PNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIEN--KWTSL------------ 485
           PN+V +  +I G+C S     AR +   +L+    +  + N   +TSL            
Sbjct: 675 PNIVCYNALIDGLCKSGDISYARNVFNSILA----KGLVPNCVTYTSLIDGSCKVGDISN 730

Query: 486 ALMVYREAIVAGTIPTVEVVSKV-LGCLQLPYNADIRER--LVENLGVSADALKRSNLCS 542
           A  +Y E +  G  P   V S +  GC       D+ +   L+E + +   A   S+  +
Sbjct: 731 AFYLYNEMLATGITPDAFVYSVLTTGCSS---AGDLEQAMFLIEEMFLRGHA-SISSFNN 786

Query: 543 LIDGFGEYDP--RAFSLLEEAASFGIVPCVSFKE--IPVVVDARKL-EIHTAKVSL 593
           L+DGF +         LL      G+VP     E  I  + +A KL E+HT  V L
Sbjct: 787 LVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVEL 842



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 162/342 (47%), Gaps = 2/342 (0%)

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
           ++ + A +VL  ++E G   +   Y  LI    +SG V+  F    +M + G+ P+  TY
Sbjct: 236 REFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTY 295

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
           GALI+G  K+ +  +A      M    +KP+ VV+  LI    + G  D AF ++ EM A
Sbjct: 296 GALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVA 355

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
               V P+ IT   L++     GQ+DRA  + K + + + +     Y + I    +    
Sbjct: 356 A--GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSK 413

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A  +  +M   G+ P+    S +I     +G+ E A ++L+E   +G+      Y+ L
Sbjct: 414 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 473

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +       N   A E+++ M  + + P +   N+LI  L    ++ ++ +  + M+  GL
Sbjct: 474 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 533

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            PN  TYS L+    +  D+E    L+ +  + G+ PN V++
Sbjct: 534 LPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 575



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 174/399 (43%), Gaps = 31/399 (7%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y   ++ G +     L++ M   GL   D +Y     +  KS    K +  F  ++ 
Sbjct: 544 IHGY---LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLD 600

Query: 89  NPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
              +     + +L+   +SS + E AF+VL  +++ G   D  +Y++LI+   K+   + 
Sbjct: 601 QGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREK 660

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            F +  EM   G++PN+  Y ALIDG  K+G ++ A   +  + +K + P+ V + +LI 
Sbjct: 661 AFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLID 720

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G +  AF +  EM A    + PD      L   C++AG +++A     +I +  +
Sbjct: 721 GSCKVGDISNAFYLYNEMLAT--GITPDAFVYSVLTTGCSSAGDLEQA---MFLIEEMFL 775

Query: 266 KGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           +G   +  +   ++   + G  +    +   +  +G++P+ + +  +I     AGK+   
Sbjct: 776 RGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEV 835

Query: 324 FEILQEAKNQGISVGIISYSSL-MGACSNAK-----------------NWQKALELYEHM 365
             I  E + +        +SSL M   +  K                 N  KAL L + +
Sbjct: 836 HTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVI 895

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
            +       S+  A++  LC   +L + + +L +M   G
Sbjct: 896 VAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 934



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 155/372 (41%), Gaps = 49/372 (13%)

Query: 45  IDLLE------DMER-----KGLLDMDKVYHARFFNVC----KSQKAIKEAFRFFKLVPN 89
           IDLLE      D+E+     K +LD   +   R + +      S   ++ AFR    +  
Sbjct: 576 IDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEK 635

Query: 90  ----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P +  ++ L+S    + D E AF +L  + + G+  +   Y  LI    KSG +  
Sbjct: 636 NGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISY 695

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              VF+ ++  G+ PN  TY +LIDG  K G ++ AF  Y  M +  + PD  V++ L T
Sbjct: 696 ARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTT 755

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
            C  +G +++A  ++ EM          H +I +         +  + +E  K++H    
Sbjct: 756 GCSSAGDLEQAMFLIEEMFLR------GHASISSFNNLVDGFCKRGKMQETLKLLHVIMG 809

Query: 266 KG--------------------TPEVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPD 303
           +G                      EV+TI +    +T +       S++ DM  +G IP 
Sbjct: 810 RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPL 869

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
           +V    + D     G ++ A  +      +   +G  SY +++          +AL L +
Sbjct: 870 DVVDDMIRDHC-KEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLK 928

Query: 364 HM-KSIKLKPTV 374
            M K   L+PT+
Sbjct: 929 EMDKRGNLQPTL 940



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 121/264 (45%), Gaps = 2/264 (0%)

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           MR +    + V +N LI    +SGAV+ AF    +M  E + + PD  T GAL+     +
Sbjct: 248 MRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM--EDYGLVPDGFTYGALINGLCKS 305

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
            + + A+ +   +    +K    VY   I+   + G+ + A  +  +M   GV P+++  
Sbjct: 306 RRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITY 365

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
             L+      G+++ A  +L++          I+Y+ ++       + + A  L   M++
Sbjct: 366 DNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMEN 425

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             + P V T + +I  LC   +  K  ++L +M + GL PN   Y+ L+    R+ +V +
Sbjct: 426 AGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSL 485

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII 451
              +  +  +  V+P+L  +  +I
Sbjct: 486 ACEIFDKMTKVNVLPDLYCYNSLI 509



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 82/186 (44%)

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
           A+    +  +++ A  V  +M ++G   + V  + LI     +G VE AF   ++ ++ G
Sbjct: 228 ALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYG 287

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +     +Y +L+     ++   +A  L + M   +LKP V     LI          +  
Sbjct: 288 LVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAF 347

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           +++ +M + G+ PN ITY  L+    +   ++   +LL Q   D   P+ + +  II   
Sbjct: 348 KMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGH 407

Query: 455 SRRYEK 460
            R + K
Sbjct: 408 FRHHSK 413


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 199/428 (46%), Gaps = 9/428 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RF 83
           +YN LI    RQG + E  +L++ M  KGL      Y+A    +CK+ K ++        
Sbjct: 134 TYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM 193

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+  +P  +T+N+L+  C  + +   A ++   +   G+  D   ++ LI   +K+G +
Sbjct: 194 LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCL 253

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   + F +M NAG+ P+   Y  LI G  + G +++A      M  +    D V +N +
Sbjct: 254 DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTI 313

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +    +   +  A ++  EM      V PD  T   L+   +  G +++A  +++M+ + 
Sbjct: 314 LNGLCKEKMLSEADELFTEMTE--RGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQR 371

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           N+K     Y   I+   +  + E    +++DM  + + P+ +    LI+   + G V  A
Sbjct: 372 NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEA 431

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           F +  E   +G    II+ ++++     A N  KA E   +M    + P   T N LI  
Sbjct: 432 FRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLING 491

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
               + + +   +++ M++ GL P+ ITY+++L    R+  ++   +++ +  E GV P+
Sbjct: 492 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 551

Query: 444 LVMFKCII 451
              +  +I
Sbjct: 552 RSTYTSLI 559



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 156/323 (48%), Gaps = 2/323 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T N++++    ++  E     L  ++E G+  D   Y TLI    + G ++  FE+   M
Sbjct: 99  TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM 158

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G++P V TY A+I+G  K G+  +A G    M    + PD   +N L+  C ++  +
Sbjct: 159 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 218

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A  +  EM ++   V PD ++  AL+   +  G +D+A + ++ +    +     +YT
Sbjct: 219 MDAERIFDEMPSQ--GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYT 276

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I I    + G    A  V D+M ++G + D V  + +++       +  A E+  E   +
Sbjct: 277 ILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTER 336

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+     ++++L+   S   N  KA+ L+E M    LKP V T N LI   C G ++ K 
Sbjct: 337 GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKV 396

Query: 394 MEVLSDMKSLGLCPNTITYSILL 416
            E+ +DM S  + PN I+Y IL+
Sbjct: 397 NELWNDMISRRIYPNHISYGILI 419



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/499 (22%), Positives = 223/499 (44%), Gaps = 24/499 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP +  F++L+     ++      +  R+++  GL        +L+    K G VD  +E
Sbjct: 26  NPLV--FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWE 83

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ E+V +G++ NV+T   +I+   K  ++         M  K V PD V +N LI A  
Sbjct: 84  IYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC 143

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G ++ AF+++  M+ +   + P   T  A++      G+  RA+ V   + K  +   
Sbjct: 144 RQGLLEEAFELMDSMSGK--GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPD 201

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I +  C +  +   A  ++D+M  +GV+PD V  SALI      G ++ A +  +
Sbjct: 202 TATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFR 261

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + KN G++   + Y+ L+G         +AL++ + M        V T N ++  LC   
Sbjct: 262 DMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEK 321

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L +  E+ ++M   G+ P+  T++ L+    +  ++   + L     +  + P++V + 
Sbjct: 322 MLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYN 381

Query: 449 CII-GMC-SRRYEKARTLNEHVLSFNSGRPQIE-----NKWTSL-----ALMVYREAIVA 496
            +I G C     EK   L   ++S       I      N + ++     A  ++ E +  
Sbjct: 382 TLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEK 441

Query: 497 GTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGF--GEYD 551
           G   T+   + ++       NA   +  + N+   G+  D +  +   +LI+GF   E  
Sbjct: 442 GFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYN---TLINGFIKEENM 498

Query: 552 PRAFSLLEEAASFGIVPCV 570
            RAF+L+ +  + G++P V
Sbjct: 499 DRAFALVNKMENSGLLPDV 517



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 196/429 (45%), Gaps = 7/429 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L +  +I      L DME KG+   D V +    N    Q  ++EAF     +     
Sbjct: 105 NALCKNQKIENTKSFLSDMEEKGVFP-DVVTYNTLINAYCRQGLLEEAFELMDSMSGKGL 163

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N +++    +     A  VL  + + G+  D   Y  L+  C ++  +     
Sbjct: 164 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER 223

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM + G+ P++ ++ ALI   +K G + +A   +  M++  + PD V++  LI    
Sbjct: 224 IFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFC 283

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G +  A  V  EM  +   +D   +T   ++        +  A E++  + +  +   
Sbjct: 284 RNGVMSEALKVRDEMLEQGCVLDV--VTYNTILNGLCKEKMLSEADELFTEMTERGVFPD 341

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +T  IN  S+ G+   A ++++ M ++ + PD V  + LID      ++E   E+  
Sbjct: 342 FYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWN 401

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +  ++ I    ISY  L+    N     +A  L++ M     + T+ T N ++   C   
Sbjct: 402 DMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAG 461

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              K  E LS+M   G+ P+ ITY+ L+    ++++++    L+++ +  G++P+++ + 
Sbjct: 462 NAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYN 521

Query: 449 CIIGMCSRR 457
            I+   SR+
Sbjct: 522 VILNGFSRQ 530



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 136/310 (43%), Gaps = 44/310 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R G +SE + + ++M  +G + +D V +    N    +K + EA   F  +      P  
Sbjct: 284 RNGVMSEALKVRDEMLEQGCV-LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDF 342

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            TF  L++  +   +   A  +  ++ +  LK D   Y TLI    K  +++ + E++++
Sbjct: 343 YTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWND 402

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY--------------------GIMRSKN 192
           M++  I PN  +YG LI+G    G V++AF  +                    G  R+ N
Sbjct: 403 MISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGN 462

Query: 193 ---------------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
                          + PD + +N LI    +   +DRAF ++ +M  E   + PD IT 
Sbjct: 463 AVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM--ENSGLLPDVITY 520

Query: 238 GALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             ++   +  G++  A  +  KMI +  +      YT  IN      + + A  V+D+M 
Sbjct: 521 NVILNGFSRQGRMQEAELIMLKMIER-GVNPDRSTYTSLINGHVTQNNLKEAFRVHDEML 579

Query: 297 KKGVIPDEVF 306
           ++G +PD+ F
Sbjct: 580 QRGFVPDDKF 589



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 36/243 (14%)

Query: 250 VDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           V R   V  ++  Y N    P V+ + +    Q       C  +  +  KG+       +
Sbjct: 7   VSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACN 66

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVG------------------------------ 338
           +L+      G V+ A+EI QE    G+ V                               
Sbjct: 67  SLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEK 126

Query: 339 -----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
                +++Y++L+ A       ++A EL + M    LKP V T NA+I  LC   +  + 
Sbjct: 127 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 186

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
             VL +M  +G+ P+T TY+ILLV C R D++     +  +    GV+P+LV F  +IG+
Sbjct: 187 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 246

Query: 454 CSR 456
            S+
Sbjct: 247 LSK 249



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 143/353 (40%), Gaps = 37/353 (10%)

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           N G  P V  +  L+    +A ++ +   A+ +++SK +       N+L+    + G VD
Sbjct: 22  NCGSNPLV--FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVD 79

Query: 215 RAFDVLAEM---------------------------------NAEVHPVDPDHITIGALM 241
            A+++  E+                                 + E   V PD +T   L+
Sbjct: 80  LAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLI 139

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            A    G ++ A E+   +    +K     Y   IN   +TG +  A  V D+M K G+ 
Sbjct: 140 NAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 199

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD    + L+        +  A  I  E  +QG+   ++S+S+L+G  S      +AL+ 
Sbjct: 200 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 259

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           +  MK+  L P       LI   C    + + ++V  +M   G   + +TY+ +L    +
Sbjct: 260 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK 319

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472
           +  +     L ++  E GV P+   F  +I   S+     KA TL E ++  N
Sbjct: 320 EKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN 372


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 221/492 (44%), Gaps = 29/492 (5%)

Query: 77  IKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           + EAFR F+ +       P   T+++L+     +   E AFQ+ + + E G +   + YT
Sbjct: 222 LGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 281

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            LI      G  D   ++  EM      PNVHTY  LID   + G++ +A G +  M   
Sbjct: 282 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKH 341

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + P  + FNALI    + G V  AF +L+ M  E     P+  T   LM+      +  
Sbjct: 342 GLCPGIITFNALINGYCKEGWVVSAFQLLSVM--EKGNCKPNIRTYNELMEGLCRVSKSY 399

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +A  + + +    +      Y I ++   + G    A ++++ M   G+ PD    +ALI
Sbjct: 400 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 459

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D     G++E A  IL     +GIS+  +++++L+         +    L+E+M   +  
Sbjct: 460 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 519

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
            T  T N  + AL    +L +   +L  M   GL P+ +T++IL+    R  +  + L +
Sbjct: 520 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 579

Query: 432 LSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 489
           L + K+ G  PN+  +  II G+C+  R E+A T+   + SF        N +T   L+ 
Sbjct: 580 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVS----PNHFTYAVLV- 634

Query: 490 YREAIVAGTIP-TVEVVSKVL--GCL--QLPYNADIRERLVENLGVSADALKRSNLCSLI 544
            +  + AG +    ++VS ++  GC      Y+A +   ++ N  + A AL  +      
Sbjct: 635 -KAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSST------ 687

Query: 545 DGFGEYDPRAFS 556
              G+ D R+ S
Sbjct: 688 ---GDLDARSLS 696



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 178/412 (43%), Gaps = 5/412 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPNPT 91
           L   GR+ E   L ++M  KG     + Y       C    + KA+K           P 
Sbjct: 252 LCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPN 311

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+ +L+         E A  V R + + GL      +  LI    K G V + F++  
Sbjct: 312 VHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLS 371

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M     +PN+ TY  L++G  +  +  KAF     +    + PDRV +N L+    + G
Sbjct: 372 VMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEG 431

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ AF++   MN+    ++PD  T  AL+      G++++A  +   + K  I      
Sbjct: 432 QLNMAFNIFNSMNSA--GLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVT 489

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +T  I+   + G  +  C ++++M +   +      +  +D  G   K+  A  +L +  
Sbjct: 490 FTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMM 549

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+   +++++ L+     A     +L++ E MK     P V T   +I  LC+  ++ 
Sbjct: 550 KYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVE 609

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           +   +L  M S G+ PN  TY++L+ A  +   ++    ++S   ++G  PN
Sbjct: 610 EAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPN 661



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 194/439 (44%), Gaps = 17/439 (3%)

Query: 28  QLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +H+Y    +RL R+G+I E   +   M + GL      ++A     CK +  +  AF+ 
Sbjct: 311 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK-EGWVVSAFQL 369

Query: 84  FKLVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             ++      P + T+N LM  +C  SK S  AF +LR V + GL  D   Y  L+    
Sbjct: 370 LSVMEKGNCKPNIRTYNELMEGLCRVSK-SYKAFLLLRRVVDNGLLPDRVTYNILVDGFC 428

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G+++  F +F+ M +AG+EP+  T+ ALIDG  K G++ +A G  G M  K +  D V
Sbjct: 429 KEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEV 488

Query: 199 VFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
            F ALI   C    A D  F  L E   E   +   H T    + A     +++ A  + 
Sbjct: 489 TFTALIDGHCKIGKAKDVCF--LFENMVENRCLTTAH-TFNCFLDALGKDYKLNEANAML 545

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             + KY +  +   +TI I    + G+   +  + + M + G  P+    + +I+   + 
Sbjct: 546 GKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNN 605

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+VE A  IL    + G+S    +Y+ L+ A   A    +A ++   M     +P     
Sbjct: 606 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 665

Query: 378 NALITALCDGDQL--PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           +AL++     +     + +    D+ +  L       + L     R  DV+  L +  + 
Sbjct: 666 SALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALKIRDEI 725

Query: 436 KEDGVIPNLVMFKCIIGMC 454
           K+ GV    +    ++G+C
Sbjct: 726 KKCGVPTEDLYNFLVVGLC 744



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 155/350 (44%), Gaps = 12/350 (3%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           AF V R +   G       Y T++    K+G V A      +++  G   + H   +L+ 
Sbjct: 155 AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVL 214

Query: 171 GCAKAGQVAKAFGAYGIM-RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
              +   + +AF  +  M + +N +P+ V ++ LI    ++G ++ AF +  EM  +   
Sbjct: 215 ANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEK--G 272

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWE 286
             P   T   L+KA  + G  D+A    KM+ +   K   P V  YTI I+   + G  E
Sbjct: 273 CQPSTRTYTVLIKAKCDIGMTDKA---MKMLDEMATKACVPNVHTYTILIDRLCREGKIE 329

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  V+  M K G+ P  +  +ALI+     G V +AF++L   +       I +Y+ LM
Sbjct: 330 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELM 389

Query: 347 -GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
            G C  +K++ KA  L   +    L P   T N L+   C   QL     + + M S GL
Sbjct: 390 EGLCRVSKSY-KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL 448

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            P+  T++ L+    +   +E    +L    + G+  + V F  +I G C
Sbjct: 449 EPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 498



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 157/350 (44%), Gaps = 11/350 (3%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG- 176
           + E G +     Y+TL+   AK       F V+  MVN G       Y  +++   K G 
Sbjct: 127 MTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGF 186

Query: 177 -QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            Q A+ F    ++R      D  V  +L+ A  +   +  AF V  +M+ E     P+ +
Sbjct: 187 VQAAEMF-CCKVLRL-GFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKE-ENCRPNSV 243

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+     AG+++ A ++ + + +   + +   YT+ I      G  + A  + D+M
Sbjct: 244 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 303

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKN 354
             K  +P+    + LID     GK+E A  + ++    G+  GII++++L+ G C   + 
Sbjct: 304 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK--EG 361

Query: 355 WQ-KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           W   A +L   M+    KP + T N L+  LC   +  K   +L  +   GL P+ +TY+
Sbjct: 362 WVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYN 421

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 461
           IL+    ++  + +   + +     G+ P+   F  +I G+C   R E+A
Sbjct: 422 ILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQA 471


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 179/398 (44%), Gaps = 35/398 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N +++    S D+  A  +LR ++E  +KAD   Y+T+I +  + G +DA   +
Sbjct: 191 PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISL 250

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   GI+ +V TY +L+ G  KAG+          M S+ + P+ + FN L+    +
Sbjct: 251 FKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVK 310

Query: 210 SGAVDRAFDVLAEMNAE-VHP--------------------------------VDPDHIT 236
            G +  A ++  EM    + P                                  PD +T
Sbjct: 311 EGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVT 370

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +L+K      +VD   +V++ I K  +      Y+I +    Q+G  + A  ++ +M 
Sbjct: 371 FTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMV 430

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNW 355
             GV+PD +    L+D     GK+E A EI ++ +   + +GI+ Y++++ G C   K  
Sbjct: 431 SHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK-V 489

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           + A  L+  +    +KP V T   +I+ LC    L +   +L  M+  G  PN  TY+ L
Sbjct: 490 EDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTL 549

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           + A  R  D+     L+ + K  G   +    K +I M
Sbjct: 550 IRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 587



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 175/413 (42%), Gaps = 43/413 (10%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           V  +RFF+     K       F K +        + T N++++       +  A+ VL  
Sbjct: 89  VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 148

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           V + G + D   + TLI      GKV     +   MV  G +P+V TY ++++G  ++G 
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 208

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
            + A      M  +NVK D   ++ +I +  + G +D A  +  EM  E   +    +T 
Sbjct: 209 TSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEM--ETKGIKSSVVTY 266

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            +L++    AG+                                   W     +  DM  
Sbjct: 267 NSLVRGLCKAGK-----------------------------------WNDGALLLKDMVS 291

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           + ++P+ +  + L+D     GK++ A E+ +E   +GIS  II+Y++LM          +
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE 351

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A  + + M   K  P + T  +LI   C   ++   M+V  ++   GL  N +TYSIL+ 
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
              +   +++   L  +    GV+P+++ +  ++ G+C   + EKA  + E +
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 169/385 (43%), Gaps = 5/385 (1%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +  N   DV       + L R G I   I L ++ME KG+      Y++    +CK+ K 
Sbjct: 220 EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKW 279

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
              A     +V     P + TFN+L+ V       + A ++ + +   G+  +   Y TL
Sbjct: 280 NDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTL 339

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +       ++     +   MV     P++ T+ +LI G     +V      +  +  + +
Sbjct: 340 MDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGL 399

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
             + V ++ L+    QSG +  A ++  EM +  H V PD +T G L+    + G++++A
Sbjct: 400 VANAVTYSILVQGFCQSGKIKLAEELFQEMVS--HGVLPDVMTYGILLDGLCDNGKLEKA 457

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E+++ + K  +     +YT  I    + G  E A +++  +  KGV P+ +  + +I  
Sbjct: 458 LEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISG 517

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G +  A  +L++ +  G +    +Y++L+ A     +   + +L E MKS      
Sbjct: 518 LCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSAD 577

Query: 374 VSTMNALITALCDGDQLPKTMEVLS 398
            S++  +I  L  G+     +++LS
Sbjct: 578 ASSIKMVIDMLLSGELDKSFLDMLS 602



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 2/238 (0%)

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A  +  EM     P+ P  +       A A   Q +   +  K +    I        
Sbjct: 70  DDAIALFQEM-IRSRPL-PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 127

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I INC  +     FA SV   + K G  PD    + LI      GKV  A  ++      
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G    +++Y+S++     + +   AL+L   M+   +K  V T + +I +LC    +   
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + +  +M++ G+  + +TY+ L+    +      G +LL       ++PN++ F  ++
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           K + A  + QE         ++ +S    A +  K +   L+  + ++   +   + T+N
Sbjct: 68  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 127

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            +I   C   +      VL  +  LG  P+T T++ L+     +  V   ++L+ +  E+
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187

Query: 439 GVIPNLVMFKCII-GMC 454
           G  P++V +  I+ G+C
Sbjct: 188 GCQPDVVTYNSIVNGIC 204


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 127/492 (25%), Positives = 221/492 (44%), Gaps = 29/492 (5%)

Query: 77  IKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           + EAFR F+ +       P   T+++L+     +   E AFQ+ + + E G +   + YT
Sbjct: 179 LGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 238

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            LI      G  D   ++  EM      PNVHTY  LID   + G++ +A G +  M   
Sbjct: 239 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKH 298

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + P  + FNALI    + G V  AF +L+ M  E     P+  T   LM+      +  
Sbjct: 299 GLCPGIITFNALINGYCKEGWVVSAFQLLSVM--EKGNCKPNIRTYNELMEGLCRVSKSY 356

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +A  + + +    +      Y I ++   + G    A ++++ M   G+ PD    +ALI
Sbjct: 357 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 416

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D     G++E A  IL     +GIS+  +++++L+         +    L+E+M   +  
Sbjct: 417 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 476

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
            T  T N  + AL    +L +   +L  M   GL P+ +T++IL+    R  +  + L +
Sbjct: 477 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 536

Query: 432 LSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 489
           L + K+ G  PN+  +  II G+C+  R E+A T+   + SF        N +T   L+ 
Sbjct: 537 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVS----PNHFTYAVLV- 591

Query: 490 YREAIVAGTIP-TVEVVSKVL--GCL--QLPYNADIRERLVENLGVSADALKRSNLCSLI 544
            +  + AG +    ++VS ++  GC      Y+A +   ++ N  + A AL  +      
Sbjct: 592 -KAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSST------ 644

Query: 545 DGFGEYDPRAFS 556
              G+ D R+ S
Sbjct: 645 ---GDLDARSLS 653



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 178/412 (43%), Gaps = 5/412 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPNPT 91
           L   GR+ E   L ++M  KG     + Y       C    + KA+K           P 
Sbjct: 209 LCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPN 268

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+ +L+         E A  V R + + GL      +  LI    K G V + F++  
Sbjct: 269 VHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLS 328

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M     +PN+ TY  L++G  +  +  KAF     +    + PDRV +N L+    + G
Sbjct: 329 VMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEG 388

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ AF++   MN+    ++PD  T  AL+      G++++A  +   + K  I      
Sbjct: 389 QLNMAFNIFNSMNSA--GLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVT 446

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +T  I+   + G  +  C ++++M +   +      +  +D  G   K+  A  +L +  
Sbjct: 447 FTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMM 506

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+   +++++ L+     A     +L++ E MK     P V T   +I  LC+  ++ 
Sbjct: 507 KYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRVE 566

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           +   +L  M S G+ PN  TY++L+ A  +   ++    ++S   ++G  PN
Sbjct: 567 EAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPN 618



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 168/367 (45%), Gaps = 15/367 (4%)

Query: 28  QLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +H+Y    +RL R+G+I E   +   M + GL      ++A     CK +  +  AF+ 
Sbjct: 268 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK-EGWVVSAFQL 326

Query: 84  FKLVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             ++      P + T+N LM  +C  SK S  AF +LR V + GL  D   Y  L+    
Sbjct: 327 LSVMEKGNCKPNIRTYNELMEGLCRVSK-SYKAFLLLRRVVDNGLLPDRVTYNILVDGFC 385

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G+++  F +F+ M +AG+EP+  T+ ALIDG  K G++ +A G  G M  K +  D V
Sbjct: 386 KEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEV 445

Query: 199 VFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
            F ALI   C    A D  F  L E   E   +   H T    + A     +++ A  + 
Sbjct: 446 TFTALIDGHCKIGKAKDVCF--LFENMVENRCLTTAH-TFNCFLDALGKDYKLNEANAML 502

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             + KY +  +   +TI I    + G+   +  + + M + G  P+    + +I+   + 
Sbjct: 503 GKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLCNN 562

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+VE A  IL    + G+S    +Y+ L+ A   A    +A ++   M     +P     
Sbjct: 563 GRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQPNSHIY 622

Query: 378 NALITAL 384
           +AL++  
Sbjct: 623 SALLSGF 629



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 157/350 (44%), Gaps = 11/350 (3%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG- 176
           + E G +     Y+TL+   AK       F V+  MVN G       Y  +++   K G 
Sbjct: 84  MTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGF 143

Query: 177 -QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            Q A+ F    ++R      D  V  +L+ A  +   +  AF V  +M+ E     P+ +
Sbjct: 144 VQAAEMF-CCKVLRL-GFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKE-ESCRPNSV 200

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+     AG+++ A ++ + + +   + +   YT+ I      G  + A  + D+M
Sbjct: 201 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 260

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKN 354
             K  +P+    + LID     GK+E A  + ++    G+  GII++++L+ G C   + 
Sbjct: 261 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK--EG 318

Query: 355 WQ-KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           W   A +L   M+    KP + T N L+  LC   +  K   +L  +   GL P+ +TY+
Sbjct: 319 WVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYN 378

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 461
           IL+    ++  + +   + +     G+ P+   F  +I G+C   R E+A
Sbjct: 379 ILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQA 428



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 155/350 (44%), Gaps = 12/350 (3%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           AF V R +   G       Y T++    K+G V A      +++  G   + H   +L+ 
Sbjct: 112 AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVL 171

Query: 171 GCAKAGQVAKAFGAYGIM-RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
              +   + +AF  +  M + ++ +P+ V ++ LI    ++G ++ AF +  EM  +   
Sbjct: 172 ANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEK--G 229

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWE 286
             P   T   L+KA  + G  D+A    KM+ +   K   P V  YTI I+   + G  E
Sbjct: 230 CQPSTRTYTVLIKAKCDIGMTDKA---MKMLDEMATKACVPNVHTYTILIDRLCREGKIE 286

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  V+  M K G+ P  +  +ALI+     G V +AF++L   +       I +Y+ LM
Sbjct: 287 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELM 346

Query: 347 -GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
            G C  +K++ KA  L   +    L P   T N L+   C   QL     + + M S GL
Sbjct: 347 EGLCRVSKSY-KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGL 405

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            P+  T++ L+    +   +E    +L    + G+  + V F  +I G C
Sbjct: 406 EPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHC 455


>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Brachypodium distachyon]
          Length = 968

 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 138/553 (24%), Positives = 244/553 (44%), Gaps = 53/553 (9%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH Y   +++GR    + +LEDME+ G+      Y+     +CK +++   A+   K + 
Sbjct: 266 LHWY---VKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRS-THAYLLLKRMR 321

Query: 89  NPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              L+    T+N L+           A  +   +   GLK     YTTLI    ++G +D
Sbjct: 322 GDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTID 381

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               V +EM  AG++P+  TY A+++     G V +AF  Y  M      PD   +  L+
Sbjct: 382 EALRVLYEMQVAGVKPSEVTYSAMLN-----GSVHEAFSVYDNMEKYGCSPDVYTYRNLL 436

Query: 205 TACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
               + G + +A +    M+  VH P   D  T+ AL+    N G +D A ++ + +   
Sbjct: 437 RGLCKGGHLVQAKEF---MSCIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTI 493

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           N       YTI ++   + G    A  +   M +KG++PD V  + L+      G+V+AA
Sbjct: 494 NFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAA 553

Query: 324 FEILQEAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
             + QE    +G+    I+Y+S+M     A    K       M   K+ P  ++ N L+ 
Sbjct: 554 SYLFQEIICKEGMYADCIAYNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPNPASYNILMH 613

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
                  L +++ +  DM   G+ P  +TY +L++   +   +E+ +  L +   +G+ P
Sbjct: 614 GHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYP 673

Query: 443 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV 502
           + + F  +I   S   EK+R +++ +  FN        KW  ++             P+ 
Sbjct: 674 DRLSFDVLINAFS---EKSR-MSDALQLFNC------MKWLYMS-------------PSS 710

Query: 503 EVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDG---FGEYDPRAF 555
           +  S ++  L     L ++ D+   +VE    S    K ++  +LI+    FG+ +  AF
Sbjct: 711 KTYSAMINGLIRKNWLQHSCDVLRDMVE----SGLEPKHTHYIALINAKCRFGDING-AF 765

Query: 556 SLLEEAASFGIVP 568
            L EE  + GIVP
Sbjct: 766 RLKEEMTALGIVP 778



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 188/436 (43%), Gaps = 9/436 (2%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLST 94
            G + E +DL E M     +     Y       C+  K +        ++     P + T
Sbjct: 477 HGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPDIVT 536

Query: 95  FN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +  +L  +    +    ++    ++ + G+ ADC  Y +++    K+GK+  +    ++M
Sbjct: 537 YTCLLKGLIKEGQVKAASYLFQEIICKEGMYADCIAYNSMMNGYLKAGKLHKVEMTIYDM 596

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               + PN  +Y  L+ G  K G ++++   Y  M  K +KP  V +  LI    + G +
Sbjct: 597 NQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMI 656

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + A   L +M  E   + PD ++   L+ A +   ++  A +++  +    +  + + Y+
Sbjct: 657 EIAVKFLDKMVLE--GIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYS 714

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             IN   +    + +C V  DM + G+ P      ALI+     G +  AF + +E    
Sbjct: 715 AMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEMTAL 774

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI    ++ SS++   S     ++ + ++  +    + PT++T   L+  LC   ++   
Sbjct: 775 GIVPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAKISDA 834

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI--- 450
           + + S M+S GL  + +TY++L+    +   V   L L  + K  G+ PN+  +  +   
Sbjct: 835 LHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLTEA 894

Query: 451 IGMCSRRYEKARTLNE 466
           I    R  E  + LN+
Sbjct: 895 IYGTGRTLEGEKLLND 910



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 130/557 (23%), Positives = 228/557 (40%), Gaps = 48/557 (8%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +Y  LI    R G I E + +L +M+  G+   +  Y A          ++ EAF  +
Sbjct: 364 LATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAML------NGSVHEAFSVY 417

Query: 85  ----KLVPNPTLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
               K   +P + T+ N+L  +C      + A + +  +       D K    L+     
Sbjct: 418 DNMEKYGCSPDVYTYRNLLRGLCKGGHLVQ-AKEFMSCIVHIPSAIDQKTLNALLLGICN 476

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G +D   ++  +MV     P++HTY  L+ G  + G++  A     +M  K + PD V 
Sbjct: 477 HGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPDIVT 536

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +  L+    + G V  A  +  E+  +   +  D I   ++M     AG++ +       
Sbjct: 537 YTCLLKGLIKEGQVKAASYLFQEIICK-EGMYADCIAYNSMMNGYLKAGKLHKVEMTIYD 595

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +++  +   P  Y I ++   + G    +  +Y DM +KG+ P  V    LI      G 
Sbjct: 596 MNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGM 655

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +E A + L +   +GI    +S+  L+ A S       AL+L+  MK + + P+  T +A
Sbjct: 656 IEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSA 715

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           +I  L   + L  + +VL DM   GL P    Y  L+ A  R  D+     L  +    G
Sbjct: 716 MINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEMTALG 775

Query: 440 VIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 499
           ++P  V    I+    R   K   + E ++ F S                    I AG +
Sbjct: 776 IVPAEVADSSIV----RGLSKCGKVEEGIIVFCS-------------------IIRAGMV 812

Query: 500 PTVEVVSKVLG--CLQLPYNADIR-ERLVENLGVSADALKRSNLCSLIDGFGEYD--PRA 554
           PT+   + ++   C +   +  +  + L+E+ G+  D +  +    LI G  +      A
Sbjct: 813 PTIATFTTLMHGLCKEAKISDALHLKSLMESCGLKIDVVTYN---VLITGLCKIQCVSDA 869

Query: 555 FSLLEEAASFGIVPCVS 571
             L EE  S G+ P V+
Sbjct: 870 LELYEEMKSKGLRPNVT 886



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 125/299 (41%), Gaps = 13/299 (4%)

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           + N   +  L++   K  +V  A  A   M +   K      NA++ A  + G     + 
Sbjct: 152 DSNPLVFDLLVNAYVKEKRVVDASMAILFMDNCGFKASAHACNAVLNALVEIGESKHVWF 211

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAI 276
            L E      P+D    T   ++ +    G +  A+    MIHK      P V  Y   +
Sbjct: 212 FLKEGLVRKFPLDVT--TCNIVLNSMCIEGNLKGAKH---MIHKMKSCSLPNVITYNTIL 266

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
           +   + G ++ A  V +DM K GV  D    + +ID      +   A+ +L+  +   ++
Sbjct: 267 HWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLA 326

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
               +Y++L+    +      A+ ++  M    LKP+++T   LI   C    + + + V
Sbjct: 327 PDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRV 386

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           L +M+  G+ P+ +TYS +L        V     +    ++ G  P++  ++ ++ G+C
Sbjct: 387 LYEMQVAGVKPSEVTYSAML-----NGSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLC 440


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 188/410 (45%), Gaps = 4/410 (0%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L +  RI+E   ++  M  +G    D  Y      +CK  + +  A   F  +P P +  
Sbjct: 297 LCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGR-VDAAKDLFYRIPKPEIVI 355

Query: 95  FNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           FN L+    +    + A  VL  +V   G+  D   Y +LI    K G V    EV H+M
Sbjct: 356 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDM 415

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            N G +PNV++Y  L+DG  K G++ +A+     M +  +KP+ V FN LI+A  +   +
Sbjct: 416 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRI 475

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++  EM  +     PD  T  +L+       ++  A  + + +    +      Y 
Sbjct: 476 PEAVEIFREMPRK--GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 533

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             IN   + G+ + A  + ++M  +G   DE+  ++LI     AG+V+ A  + ++    
Sbjct: 534 TLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD 593

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G +   IS + L+     +   ++A+E  + M      P + T N+LI  LC   ++   
Sbjct: 594 GHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG 653

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           + +   +++ G+ P+T+T++ L+    +   V    +LL +  EDG +PN
Sbjct: 654 LTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 703



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 179/383 (46%), Gaps = 9/383 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PTL TF ++M    +  + + A  +LR + + G   +  +Y TLI + +K  +V+   ++
Sbjct: 215 PTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQL 274

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G  P+  T+  +I G  K  ++ +A      M  +   PD + +  L+    +
Sbjct: 275 LEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCK 334

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGT 268
            G VD A D+   +        P+ +    L+      G++D A+ V   M+  Y I   
Sbjct: 335 IGRVDAAKDLFYRIPK------PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPD 388

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I    + G    A  V  DM  KG  P+    + L+D     GK++ A+ +L 
Sbjct: 389 VCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLN 448

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E    G+    + ++ L+ A        +A+E++  M     KP V T N+LI+ LC+ D
Sbjct: 449 EMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVD 508

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++   + +L DM S G+  NT+TY+ L+ A  R+ +++    L+++    G   + + + 
Sbjct: 509 EIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYN 568

Query: 449 CII-GMC-SRRYEKARTLNEHVL 469
            +I G+C +   +KAR+L E +L
Sbjct: 569 SLIKGLCRAGEVDKARSLFEKML 591



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 160/376 (42%), Gaps = 48/376 (12%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF++M++  I P + T+G ++       ++  A      M      P+ V++  LI +  
Sbjct: 204 VFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLS 263

Query: 209 QSGAVDRAFDVLAEM-------NAE--------------------------VHPVDPDHI 235
           +   V+ A  +L EM       +AE                          +    PD I
Sbjct: 264 KCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDI 323

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYD 293
           T G LM      G+VD A++++  I K      PE  ++   I+     G  + A +V  
Sbjct: 324 TYGYLMNGLCKIGRVDAAKDLFYRIPK------PEIVIFNTLIHGFVTHGRLDDAKAVLS 377

Query: 294 DM-TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           DM T  G++PD    ++LI      G V  A E+L + +N+G    + SY+ L+      
Sbjct: 378 DMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKL 437

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
               +A  +   M +  LKP     N LI+A C   ++P+ +E+  +M   G  P+  T+
Sbjct: 438 GKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 497

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTL-NEHVL 469
           + L+      D+++  L LL     +GV+ N V +  +I    RR E  +AR L NE V 
Sbjct: 498 NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 557

Query: 470 SFNSGRPQIENKWTSL 485
               G P  E  + SL
Sbjct: 558 ---QGSPLDEITYNSL 570



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 110/254 (43%), Gaps = 7/254 (2%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVY 257
           V+  LI   G +G       +L +M  E   V  + + I ++M+    AG   +  R + 
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDE-GIVFKESLFI-SIMRDYDKAGFPGQTTRLML 170

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           +M + Y+ + T + Y + +         + A +V+ DM  + + P       ++      
Sbjct: 171 EMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAV 230

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            ++++A  +L++    G     + Y +L+ + S      +AL+L E M  +   P   T 
Sbjct: 231 NEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 290

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N +I  LC  D++ +  ++++ M   G  P+ ITY  L+    +   V+    L  +  +
Sbjct: 291 NDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK 350

Query: 438 DGVIPNLVMFKCII 451
               P +V+F  +I
Sbjct: 351 ----PEIVIFNTLI 360


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 185/424 (43%), Gaps = 5/424 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
            +R+G   E   ++++M   G+      Y      +CK  +  + +    ++V +   P 
Sbjct: 359 FMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPD 418

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+N+++         + AF++L  ++ AG+  +   Y+ +I    +SG+ +   ++  
Sbjct: 419 TITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLE 478

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   G++PN   Y  LI G  + G V+ A   +  M   NV PD   +N+LI    + G
Sbjct: 479 EMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 538

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V+ +    A+M  +   + P+  T   L+      G ++ A ++ + +    +K    +
Sbjct: 539 RVEESTKYFAQM--QERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 596

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +    ++ D E   S +  M  +GV+ D      LI     +G +EAAF +L   +
Sbjct: 597 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIE 656

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G    +  YSSL+       + +KA  + + M    + P +   NALI  LC    + 
Sbjct: 657 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 716

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               V + + + GL PN +TY+ L+    +  D+     L ++    G+ P+  ++  + 
Sbjct: 717 YARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLT 776

Query: 452 GMCS 455
             CS
Sbjct: 777 TGCS 780



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 170/359 (47%), Gaps = 2/359 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T++ L+      ++ + A +VL  ++E G   +   Y  LI    +SG V+  F 
Sbjct: 241 SPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFG 300

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              +M + G+ P+  TYGALI+G  K+ +  +A      M    +KP+ VV+  LI    
Sbjct: 301 FKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFM 360

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G  D AF ++ EM A    V P+ IT   L++     GQ+DRA  + K + + + +  
Sbjct: 361 REGNADEAFKMIKEMVAA--GVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPD 418

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y + I    +    + A  +  +M   G+ P+    S +I     +G+ E A ++L+
Sbjct: 419 TITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLE 478

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   +G+      Y+ L+       N   A E+++ M  + + P +   N+LI  L    
Sbjct: 479 EMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 538

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           ++ ++ +  + M+  GL PN  TYS L+    +  D+E    L+ +  + G+ PN V++
Sbjct: 539 RVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIY 597



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 185/429 (43%), Gaps = 39/429 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G + E     +DME  GL+     Y A    +CKS++           
Sbjct: 281 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRR----------- 329

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
                                S  A  +L  +  A LK +  +Y  LI    + G  D  
Sbjct: 330 ---------------------SNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEA 368

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           F++  EMV AG++PN  TY  L+ G  K GQ+ +A      M   + +PD + +N +I  
Sbjct: 369 FKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEG 428

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +  +   AF +L+EM  E   + P+  T   ++     +G+ ++A ++ + +    +K
Sbjct: 429 HFRHHSKKDAFRLLSEM--ENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK 486

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
               VY   I+   + G+   AC ++D MTK  V+PD    ++LI      G+VE + + 
Sbjct: 487 PNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKY 546

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             + + +G+     +YS L+       + + A +L + M    LKP       L+ +   
Sbjct: 547 FAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFK 606

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
            D + K       M   G+  +   Y IL+       ++E    +LS  +++G +P++ +
Sbjct: 607 SDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV 666

Query: 447 FKCII-GMC 454
           +  +I G+C
Sbjct: 667 YSSLISGLC 675



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 168/362 (46%), Gaps = 8/362 (2%)

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           K+AFR    + N    P + T+++++     S + E A  +L  +   GLK +  +Y  L
Sbjct: 436 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 495

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I+   + G V    E+F +M    + P+++ Y +LI G +K G+V ++   +  M+ + +
Sbjct: 496 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGL 555

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDR 252
            P+   ++ LI    ++G ++ A  ++  M +  + P D  +I    L+++   +  +++
Sbjct: 556 LPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYID---LLESYFKSDDIEK 612

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
               +K +    +     +Y I I+  S +G+ E A  V   + K G +PD    S+LI 
Sbjct: 613 VSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLIS 672

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                   E AF IL E   +G+   I+ Y++L+     + +   A  ++  + +  L P
Sbjct: 673 GLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVP 732

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T  +LI   C    +     + ++M + G+ P+   YS+L   C    D+E  + L+
Sbjct: 733 NCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLI 792

Query: 433 SQ 434
            +
Sbjct: 793 EE 794



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 165/359 (45%), Gaps = 2/359 (0%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +  ++L+     S   + A +V+ ++++ G+    +    L+    ++  +  +++V   
Sbjct: 175 AVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREF 234

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV AGI P+V+TY  LI+   K  +   A      MR +    + V +N LI    +SGA
Sbjct: 235 MVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGA 294

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V+ AF    +M  E + + PD  T GAL+     + + + A+ +   +    +K    VY
Sbjct: 295 VEEAFGFKKDM--EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVY 352

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+   + G+ + A  +  +M   GV P+++    L+      G+++ A  +L++   
Sbjct: 353 ANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVR 412

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
                  I+Y+ ++       + + A  L   M++  + P V T + +I  LC   +  K
Sbjct: 413 DSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEK 472

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             ++L +M + GL PN   Y+ L+    R+ +V +   +  +  +  V+P+L  +  +I
Sbjct: 473 ASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLI 531



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 181/412 (43%), Gaps = 31/412 (7%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y   ++ G +     L++ M   GL   D +Y     +  KS    K +  F  ++ 
Sbjct: 566 IHGY---LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLD 622

Query: 89  NPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
              +     + +L+   +SS + E AF+VL  +++ G   D  +Y++LI+   K+   + 
Sbjct: 623 QGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREK 682

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            F +  EM   G++PN+  Y ALIDG  K+G ++ A   +  + +K + P+ V + +LI 
Sbjct: 683 AFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLID 742

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G +  AF +  EM A    + PD      L   C++AG +++A     +I +  +
Sbjct: 743 GSCKVGDISNAFYLYNEMLAT--GITPDAFVYSVLTTGCSSAGDLEQA---MFLIEEMFL 797

Query: 266 KGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           +G   +  +   ++   + G  +    +   +  +G++P+ + +  +I     AGK+   
Sbjct: 798 RGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEV 857

Query: 324 FEILQEAKNQGISVGIISYSSL-MGACSNAK-----------------NWQKALELYEHM 365
             I  E + +        +SSL M   +  K                 N  KAL L + +
Sbjct: 858 HTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVI 917

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
            +       S+  A++  LC   +L + + +L +M   G+CP+     ILL 
Sbjct: 918 VAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLT 969



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 133/303 (43%), Gaps = 4/303 (1%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+D   K+G+V  A     +MR + + P     NAL+    ++ A+   + V   M    
Sbjct: 180 LVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGA- 238

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD  T   L++A     + D A++V   + +         Y + I    ++G  E 
Sbjct: 239 -GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEE 297

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A     DM   G++PD     ALI+    + +   A  +L E     +   ++ Y++L+ 
Sbjct: 298 AFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLID 357

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                 N  +A ++ + M +  ++P   T + L+  LC   Q+ +   +L  M      P
Sbjct: 358 GFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRP 417

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLN 465
           +TITY++++    R    +    LLS+ +  G+ PN+  +  +I G+C S   EKA  L 
Sbjct: 418 DTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLL 477

Query: 466 EHV 468
           E +
Sbjct: 478 EEM 480



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 77/184 (41%)

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +P V  + ++   ++G  + A  V   M  +G+ P     +AL+     A  +   +++ 
Sbjct: 173 SPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVR 232

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +     GIS  + +YS+L+ A    + +  A ++   M+         T N LI  LC  
Sbjct: 233 EFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRS 292

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             + +      DM+  GL P+  TY  L+    +         LL +     + PN+V++
Sbjct: 293 GAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVY 352

Query: 448 KCII 451
             +I
Sbjct: 353 ANLI 356


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 181/395 (45%), Gaps = 9/395 (2%)

Query: 77  IKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +++A + F L+       P   ++++L+         E AF +   + E G +   + YT
Sbjct: 246 LRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYT 305

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            LI      G +D  F +F EM+  G +PNVHTY  LIDG  + G++ +A G    M   
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + P  + +NALI    + G V  AF++L  M  E     P+  T   LM+     G+  
Sbjct: 366 GIFPSVITYNALINGYCKDGRVVPAFELLTVM--EKRACKPNVRTFNELMEGLCRVGKPY 423

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +A  + K +    +      Y + I+   + G    A  +   M    + PD +  +A+I
Sbjct: 424 KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAII 483

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           +     GK + A   L     +GIS+  ++ ++L+    N    + AL + E +  +++ 
Sbjct: 484 NAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRML 543

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
            T  ++N ++  L  G +L + + +L  +  LGL P+ +TY+ L+    R  D+     +
Sbjct: 544 TTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRM 603

Query: 432 LSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 464
           L   K  G +PN+  +  II G+C   R E+A  L
Sbjct: 604 LELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKL 638



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 170/394 (43%), Gaps = 9/394 (2%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
            +Y  LI+    +G I +  +L ++M  +G       Y      +C+  K  +      K
Sbjct: 302 RTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRK 361

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +V +   P++ T+N L++          AF++L ++++   K + + +  L+    + GK
Sbjct: 362 MVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGK 421

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                 +   M++ G+ P++ +Y  LIDG  + G +  A+     M S +++PD + F A
Sbjct: 422 PYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTA 481

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I A  + G  D A   L  M  +   +  D +T   L+    N G+   A  + + + K
Sbjct: 482 IINAFCKQGKADVASAFLGLMLRK--GISLDEVTGTTLIDGVCNVGKTRDALFILETLVK 539

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             +  TP    + ++  S+    +   ++   + K G++P  V  + L+D    +G +  
Sbjct: 540 MRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISG 599

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           +F +L+  K  G    +  Y+ ++         ++A +L   M+   + P   T   ++ 
Sbjct: 600 SFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
              +  +L + +E +  M   G   N   YS LL
Sbjct: 660 GYVNNGKLDRALETVRAMVERGYELNDRIYSSLL 693



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 149/328 (45%), Gaps = 10/328 (3%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A+   R ++  G       Y T++    K+G  +A      +++  G   + H   +L+ 
Sbjct: 179 AYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLL 238

Query: 171 GCAKAGQVAKAFGAYGIM-RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
           G  +   +  A   + +M R     P+ V ++ LI    + G ++ AF +  +M  +   
Sbjct: 239 GFCRGLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK--G 296

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
             P   T   L+KA  + G +D+A  ++  +     K     YT+ I+   + G  E A 
Sbjct: 297 CQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEAN 356

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GA 348
            V   M K G+ P  +  +ALI+     G+V  AFE+L   + +     + +++ LM G 
Sbjct: 357 GVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
           C   K + KA+ L + M    L P + + N LI  LC    +    ++L+ M S  L P+
Sbjct: 417 CRVGKPY-KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPD 475

Query: 409 TITYSILLVA-CER-KDDVE---VGLML 431
            +T++ ++ A C++ K DV    +GLML
Sbjct: 476 CLTFTAIINAFCKQGKADVASAFLGLML 503



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 18/223 (8%)

Query: 18  HANYAHDVSEQLHSY-------------NRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
           H N A+ +   ++S+             N   +QG+       L  M RKG+  +D+V  
Sbjct: 456 HMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGI-SLDEVTG 514

Query: 65  ARFFN-VCKSQKAIKEAFRFFKLVPNPTLST---FNMLMSVCASSKDSEGAFQVLRLVQE 120
               + VC   K     F    LV    L+T    N+++ + +     +    +L  + +
Sbjct: 515 TTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINK 574

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
            GL      YTTL+    +SG +   F +   M  +G  PNV+ Y  +I+G  + G+V +
Sbjct: 575 LGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEE 634

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           A      M+   V P+ V +  ++     +G +DRA + +  M
Sbjct: 635 AEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAM 677



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 113/263 (42%), Gaps = 6/263 (2%)

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           CK ++ +    +  KL   P++ T+  L+     S D  G+F++L L++ +G   +   Y
Sbjct: 560 CKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPY 619

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T +I    + G+V+   ++   M ++G+ PN  TY  ++ G    G++ +A      M  
Sbjct: 620 TIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVE 679

Query: 191 KNVKPDRVVFNALITA--CGQSGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKACAN 246
           +  + +  ++++L+      Q G  +   + + E+ + V  +      + I  + + C  
Sbjct: 680 RGYELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLCIFLVTRLCKE 739

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G+ D +  + + I K  +     +  I  + CS+    +    +   + K G +P    
Sbjct: 740 -GRTDESNGLVQTILKSGVFLEKAIDIIMESYCSKKKHTK-CVELITLVLKSGFVPSFKS 797

Query: 307 LSALIDFAGHAGKVEAAFEILQE 329
              +I      G  E A E++ E
Sbjct: 798 FCLVIQGLKKEGDTERARELVME 820


>gi|302835181|ref|XP_002949152.1| hypothetical protein VOLCADRAFT_104228 [Volvox carteri f.
           nagariensis]
 gi|300265454|gb|EFJ49645.1| hypothetical protein VOLCADRAFT_104228 [Volvox carteri f.
           nagariensis]
          Length = 1363

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 204/455 (44%), Gaps = 57/455 (12%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-----VCKSQKAIKEAFRF 83
           L +   L R+G +   I  L+++ +    D + ++    +      V ++QKA K A +F
Sbjct: 93  LSALKELTRRGELELLIRGLQELSKP---DQEAIFRRWRYQDFLDAVTRNQKA-KLALQF 148

Query: 84  FKL-VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT--- 136
            KL VPN   P L T ++L + CA  +D +    VL L ++  +  D  + T+LI     
Sbjct: 149 AKLAVPNVHKPALLTMSVLKT-CAKCRDLDAGMTVLELARKHAVPIDSHMLTSLINAPSA 207

Query: 137 ---------------------CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
                                C   G VD    V+ +M   G   + H YGALI  CA+A
Sbjct: 208 ARLLRPPPPPMAIFALHINPVCKAVGNVDKAHRVYLDMRAGGHRIDSHVYGALIATCAEA 267

Query: 176 GQ---------------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
            +               + +AF       +  V     V+N+L+   G+SG ++RAF+VL
Sbjct: 268 MKRDLTVMHERKDQYVLLERAFQYVADAEAAGVVLQAPVWNSLMVCAGRSGELNRAFEVL 327

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC- 279
             M  +   +     T G+L+++C  A Q ++A  V+++  +   +   ++YT A++ C 
Sbjct: 328 TMM--QQRGISASATTYGSLIESCVCARQPEKALRVFEVALQKGFQSEVKIYTQALSACM 385

Query: 280 -SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
                 WE A  +Y  M +  V  D+ F + L+  AG  G+++ +FE+L E   +GI   
Sbjct: 386 LPLPHAWERAQDIYPAMQRASVRADKKFFACLMAVAGRCGRLDTSFELLTEMAAEGIRPS 445

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
             + S+++ AC    N   A  +Y+     K+ P +S  N ++       +  + + +LS
Sbjct: 446 ATTISAIIYACLERGNLALARRVYDLGARQKVYPVLSQFNRMMDVYASECRFGEVVSLLS 505

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           DM + G  PN  TY I++ AC   D   +   + +
Sbjct: 506 DMVAAGRSPNLNTYRIIINACAFTDQAGLAFQVFA 540


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 167/344 (48%), Gaps = 2/344 (0%)

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           +  A Q+LR V    ++ +  +Y T+I +  K   V+  F+++ EMV+ GI P+V TY A
Sbjct: 193 TSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNA 252

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           LI G    G++  A   +  M  +N+ P+   FN L+    +   +  A +VLA M  + 
Sbjct: 253 LISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQ- 311

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD  T  +LM       +V++A+ ++  I +  +      Y+I I+   +    + 
Sbjct: 312 -GIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDE 370

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A +++ +M    +IPD V  ++LID     GK+  A +++ E  ++G+    I+Y+S++ 
Sbjct: 371 AMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILD 430

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           A        KA+ L   MK   ++P + T   L+  LC   +L     V  D+   G   
Sbjct: 431 ALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYIL 490

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   Y+ ++         +  L LLS+ +E+G IPN V ++ II
Sbjct: 491 DVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIII 534



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 183/365 (50%), Gaps = 12/365 (3%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           +F VL  + + G + +    TTLI      G++    +   ++V  G   N  +YG LI+
Sbjct: 126 SFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLIN 185

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G  K GQ + A      +  K V+P+ V++N +I +  +   V+ AFD+ +EM ++   +
Sbjct: 186 GLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSK--GI 243

Query: 231 DPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAI---NCCSQTGDWE 286
            PD +T  AL+      G++  A +++ KMI + NI   P VYT  I     C +    E
Sbjct: 244 SPDVVTYNALISGFCIVGKMKDATDLFNKMIFE-NI--NPNVYTFNILVDGFCKERRLKE 300

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A +V   M K+G+ PD    ++L+D      +V  A  I      +G++  I SYS ++
Sbjct: 301 -AKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMI 359

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                 K   +A+ L++ M    + P V T N+LI  LC   ++   ++++ +M   G+ 
Sbjct: 360 HGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVP 419

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTL 464
            + ITY+ +L A  +   V+  + LL++ K++G+ P++  +  ++ G+C   R E AR +
Sbjct: 420 HDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIV 479

Query: 465 NEHVL 469
            E +L
Sbjct: 480 FEDLL 484



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 190/408 (46%), Gaps = 9/408 (2%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEAFRFFKLVPNPTLS 93
           +G+I + +   + +   G   ++KV +    N +CK   +  A++   R    +  P + 
Sbjct: 155 KGQIHQALQFHDKVVALGF-HLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVV 213

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
            +N ++      K    AF +   +   G+  D   Y  LI+     GK+    ++F++M
Sbjct: 214 MYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKM 273

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +   I PNV+T+  L+DG  K  ++ +A     +M  + +KPD   +N+L+        V
Sbjct: 274 IFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEV 333

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           ++A  +   ++     V+P+  +   ++       +VD A  ++K +H  NI      Y 
Sbjct: 334 NKAKHIFNTISQR--GVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYN 391

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+   + G   +A  + D+M  +GV  D++  ++++D      +V+ A  +L + K++
Sbjct: 392 SLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDE 451

Query: 334 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           GI   I +Y++L+ G C N +  + A  ++E +        V+   A+I   C      +
Sbjct: 452 GIQPDICTYTTLVDGLCKNGR-LEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDE 510

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           ++++LS M+  G  PN +TY I++ +   KD+ +    LL +    G+
Sbjct: 511 SLDLLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 114/259 (44%), Gaps = 12/259 (4%)

Query: 214 DRAFDVLAEMNAEVHPVDPDH--ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           D   ++++  N  +H  +P       G ++ +   +        +++ +    I     +
Sbjct: 50  DNKHNLVSSFNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVI 109

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
            +I INC SQ G    + SV   + K G  P+ + L+ LI      G++  A +   +  
Sbjct: 110 LSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVV 169

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G  +  +SY +L+           AL+L   +    ++P V   N +I ++C    + 
Sbjct: 170 ALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVN 229

Query: 392 KTMEVLSDMKSLGLCPNTITYSILL----VACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           +  ++ S+M S G+ P+ +TY+ L+    +  + KD  +    L ++   + + PN+  F
Sbjct: 230 EAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATD----LFNKMIFENINPNVYTF 285

Query: 448 KCII-GMC-SRRYEKARTL 464
             ++ G C  RR ++A+ +
Sbjct: 286 NILVDGFCKERRLKEAKNV 304



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/430 (18%), Positives = 176/430 (40%), Gaps = 63/430 (14%)

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           +P++  +G ++    K+   +     +  M    +  D V+ + LI    Q G    +F 
Sbjct: 69  KPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFS 128

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           VLA++    +  +P+ IT+  L+K     GQ+ +A + +                     
Sbjct: 129 VLAKILKMGY--EPNVITLTTLIKGLCLKGQIHQALQFH--------------------- 165

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
                         D +   G   ++V    LI+     G+  AA ++L+    + +   
Sbjct: 166 --------------DKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPN 211

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           ++ Y++++ +    K   +A +LY  M S  + P V T NALI+  C   ++    ++ +
Sbjct: 212 VVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFN 271

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 458
            M    + PN  T++IL+    ++  ++    +L+   + G+ P++  +  ++     RY
Sbjct: 272 KMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMD----RY 327

Query: 459 EKARTLN--EHVLSFNSGR---PQIEN-----------KWTSLALMVYREAIVAGTIPTV 502
              + +N  +H+ +  S R   P I +           K    A+ +++E      IP V
Sbjct: 328 CLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDV 387

Query: 503 EVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLL 558
              + ++  L    ++ Y   + + +  + GV  D +  +++   +    + D +A +LL
Sbjct: 388 VTYNSLIDGLCKLGKISYALKLVDEM-HDRGVPHDKITYNSILDALCKNHQVD-KAIALL 445

Query: 559 EEAASFGIVP 568
            +    GI P
Sbjct: 446 TKMKDEGIQP 455


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 198/433 (45%), Gaps = 11/433 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFF--- 84
           LH Y    ++GR    I+LL+ M+ KG+ D D   Y+    ++C+S +  K         
Sbjct: 275 LHWY---CKKGRFKAAIELLDHMKSKGV-DADVCTYNMLIHDLCRSNRIAKGYLLLRDMR 330

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K + +P   T+N L++  ++      A Q+L  +   GL  +   +  LI      G   
Sbjct: 331 KRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFK 390

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++F+ M   G+ P+  +YG L+DG  K  +   A G Y  M+   V   R+ +  +I
Sbjct: 391 EALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMI 450

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               ++G +D A  +L EM+ +   +DPD +T  AL+      G+   A+E+   I++  
Sbjct: 451 DGLCKNGFLDEAVVLLNEMSKD--GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVG 508

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +     +Y+  I  C + G  + A  +Y+ M  +G   D    + L+     AGKV  A 
Sbjct: 509 LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAE 568

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E ++   + GI    +S+  L+    N+    KA  +++ M  +   PT  T  +L+  L
Sbjct: 569 EFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGL 628

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C G  L +  + L  + ++    +T+ Y+ LL A  +  ++   + L  +  +  ++P+ 
Sbjct: 629 CKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDS 688

Query: 445 VMFKCII-GMCSR 456
             +  +I G+C +
Sbjct: 689 YTYTSLISGLCRK 701



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 188/420 (44%), Gaps = 7/420 (1%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           +R+G I + +++   M   G        +A   +V KS + +   + F K +      P 
Sbjct: 174 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDV-SVWSFLKEMLKRKICPD 232

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++TFN+L++V  +    E +  +++ ++++G       Y T++    K G+  A  E+  
Sbjct: 233 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 292

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M + G++ +V TY  LI    ++ ++AK +     MR + + P+ V +N LI      G
Sbjct: 293 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 352

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V  A  +L EM +    + P+H+T  AL+    + G    A +++ M+    +  +   
Sbjct: 353 KVLIASQLLNEMLS--FGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 410

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + ++   +  +++ A   Y  M + GV    +  + +ID     G ++ A  +L E  
Sbjct: 411 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 470

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             GI   I++YS+L+        ++ A E+   +  + L P     + LI   C    L 
Sbjct: 471 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 530

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + + +   M   G   +  T+++L+ +  +   V      +     DG++PN V F C+I
Sbjct: 531 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 590



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/461 (20%), Positives = 197/461 (42%), Gaps = 24/461 (5%)

Query: 16   GKHANYAHDVSEQLHS---------YNRLI----RQGRISECIDLLEDMERKGLLDMDKV 62
            G H   A    + LH+         YN L+    + G +++ + L  +M ++ +L     
Sbjct: 631  GGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYT 690

Query: 63   YHARFFNVCKSQKAI------KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
            Y +    +C+  K +      KEA     ++PN  + T    +     +   +       
Sbjct: 691  YTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYT--CFVDGMFKAGQWKAGIYFRE 748

Query: 117  LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
             +   G   D      +I   ++ GK++   ++  EM N    PN+ TY  L+ G +K  
Sbjct: 749  QMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRK 808

Query: 177  QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
             V+ +F  Y  +    + PD++  ++L+    +S  ++    +L         V+ D  T
Sbjct: 809  DVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICR--GVEVDRYT 866

Query: 237  IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
               L+  C   G+++ A ++ K++    I    +     ++  ++   ++ +  V  +M+
Sbjct: 867  FNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMS 926

Query: 297  KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            K+G+ P+      LI+     G ++ AF + +E     I    ++ S+++ A +      
Sbjct: 927  KQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKAD 986

Query: 357  KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            +A  L   M  +KL PT+++   L+   C    + + +E+   M + GL  + ++Y++L+
Sbjct: 987  EATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLI 1046

Query: 417  VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
                 K D+ +   L  + K DG + N   +K +I G+ +R
Sbjct: 1047 TGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLAR 1087



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 96/484 (19%), Positives = 189/484 (39%), Gaps = 51/484 (10%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
            L + G+++E  + +  M   G+L     +         S + +K AF  F    K+  +P
Sbjct: 558  LCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLK-AFSVFDEMTKVGHHP 616

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            T  T+  L+           A + L+ +       D  +Y TL+T   KSG +     +F
Sbjct: 617  TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 676

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
             EMV   I P+ +TY +LI G  + G+  +A  F      R  NV P++V++   +    
Sbjct: 677  GEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG-NVLPNKVMYTCFVDGMF 735

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            ++G          +M+   H   PD +T  A++   +  G++++  ++   +   N    
Sbjct: 736  KAGQWKAGIYFREQMDNLGHT--PDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPN 793

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-----------------EVFLSALI 311
               Y I ++  S+  D   +  +Y  +   G++PD                 E+ L  L 
Sbjct: 794  LTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILK 853

Query: 312  DFAGHA------------------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
             F                      G++  AF++++   + GIS+   +  +++   +   
Sbjct: 854  AFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNH 913

Query: 354  NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             +Q++  +   M    + P       LI  LC    +     V  +M +  +CP  +  S
Sbjct: 914  RFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAES 973

Query: 414  IL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
             +   L  C + D+  + L  + + K   ++P +  F  ++ +C +       L   V+ 
Sbjct: 974  AMVRALAKCGKADEATLLLRFMLKMK---LVPTIASFTTLMHLCCKNGNVIEALELRVVM 1030

Query: 471  FNSG 474
             N G
Sbjct: 1031 SNCG 1034



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 123/270 (45%), Gaps = 16/270 (5%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDV---LAEMNAEVHPVDPDHITIGALMKA 243
           ++R++   P R +   L    G+S  V  A      L   N  V+ +         L++ 
Sbjct: 122 LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDI---------LIRV 172

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVI 301
               G +  + E+++++  Y     P VYT    +    ++G+     S   +M K+ + 
Sbjct: 173 YLREGMIQDSLEIFRLMGLYGF--NPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKIC 230

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD    + LI+     G  E +  ++Q+ +  G +  I++Y++++        ++ A+EL
Sbjct: 231 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 290

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            +HMKS  +   V T N LI  LC  +++ K   +L DM+   + PN +TY+ L+     
Sbjct: 291 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 350

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  V +   LL++    G+ PN V F  +I
Sbjct: 351 EGKVLIASQLLNEMLSFGLSPNHVTFNALI 380



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 123/282 (43%), Gaps = 6/282 (2%)

Query: 175 AGQVAKAFGAY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           +G+ +  FGA     R  N  P   V++ LI    + G +  + ++   M   ++  +P 
Sbjct: 142 SGKSSFVFGALMTTYRLCNSNPS--VYDILIRVYLREGMIQDSLEIFRLMG--LYGFNPS 197

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T  A++ +   +G+        K + K  I      + I IN     G +E +  +  
Sbjct: 198 VYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQ 257

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M K G  P  V  + ++ +    G+ +AA E+L   K++G+   + +Y+ L+     + 
Sbjct: 258 KMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSN 317

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
              K   L   M+   + P   T N LI    +  ++    ++L++M S GL PN +T++
Sbjct: 318 RIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFN 377

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            L+     + + +  L +    +  G+ P+ V +  ++ G+C
Sbjct: 378 ALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLC 419


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 172/373 (46%), Gaps = 10/373 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+N+L++    +++ E AF V+R ++E  G+    K +  ++    KSGKV A  +
Sbjct: 92  PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F      G   ++HTY A++D  AK  ++  A      + +    P    +NAL+    
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLC 211

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
           + G ++ A D+L ++    +   PD +T  +L+      G+  R+ E YK+  +  ++G 
Sbjct: 212 KMGRLEEAIDLLRKIVD--NGCTPDVVTYTSLIDG---LGKEKRSFEAYKLFKEMALRGL 266

Query: 268 --TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 YT  I    Q G    A SVY  MT +G +PD V LS +ID    AG++ AA  
Sbjct: 267 VLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVR 326

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           I +  + +G++   + YS+L+     A+    ALE+   MK     P   T N LI  LC
Sbjct: 327 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC 386

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               +        +M   G  P+  TY+IL+    +  + +    +          PN+V
Sbjct: 387 KSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVV 446

Query: 446 MFKCII-GMCSRR 457
            +  +I G+C RR
Sbjct: 447 TYGTLISGLCKRR 459



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 187/439 (42%), Gaps = 11/439 (2%)

Query: 43  ECIDLLEDMERK-GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNML 98
           E   ++ +ME   G+    K ++     +CKS K +     F     N     + T+  +
Sbjct: 112 EAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAI 171

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           +   A +K  + A  ++  +   G       Y  L+    K G+++   ++  ++V+ G 
Sbjct: 172 VDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC 231

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
            P+V TY +LIDG  K  +  +A+  +  M  + +  D V + ALI    Q+G + +A  
Sbjct: 232 TPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASS 291

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           V   M ++     PD +T+  ++     AG++  A  ++K +    +     VY+  I+ 
Sbjct: 292 VYKTMTSQ--GCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 349

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             +    + A  +   M K    PD +  + LID    +G VEAA     E    G    
Sbjct: 350 LCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPD 409

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           + +Y+ L+     A N   A  +++ M S    P V T   LI+ LC   QL K      
Sbjct: 410 VYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQ 469

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 458
            MK  G  P++  YS L+    +   +E G ML  + +  GV  +    + I  +C    
Sbjct: 470 HMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLC---- 525

Query: 459 EKARTLNEHVLSFNSGRPQ 477
            KA  ++E V  FN+ R +
Sbjct: 526 -KANRVDEAVSLFNAIRKE 543



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 185/398 (46%), Gaps = 17/398 (4%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +H+Y  ++    +  +I + + L+E +   G       Y+A    +CK  + ++EA    
Sbjct: 165 IHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGR-LEEAIDLL 223

Query: 85  -KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            K+V N   P + T+  L+      K S  A+++ + +   GL  D   YT LI    ++
Sbjct: 224 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQA 283

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK+     V+  M + G  P+V T   +IDG  KAG++  A   +  M ++ + P+ VV+
Sbjct: 284 GKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVY 343

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +ALI    ++  +D A ++LA+M        PD IT   L+     +G V+ AR  +  +
Sbjct: 344 SALIHGLCKARKMDCALEMLAQMKKAF--CTPDTITYNILIDGLCKSGDVEAARAFFDEM 401

Query: 261 HKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +   K  P+VYT  I ++   + G+ + AC V+DDM+     P+ V    LI       
Sbjct: 402 LEAGCK--PDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRR 459

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           ++  A    Q  K +G       YSSL+     +   +    L++ M+   +  +  T  
Sbjct: 460 QLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANS-QTRT 518

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            LI  LC  +++ + + + + ++  G+ P+   Y+ ++
Sbjct: 519 RLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSII 555


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 198/433 (45%), Gaps = 11/433 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFF--- 84
           LH Y    ++GR    I+LL+ M+ KG+ D D   Y+    ++C+S +  K         
Sbjct: 235 LHWY---CKKGRFKAAIELLDHMKSKGV-DADVCTYNMLIHDLCRSNRIAKGYLLLRDMR 290

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K + +P   T+N L++  ++      A Q+L  +   GL  +   +  LI      G   
Sbjct: 291 KRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFK 350

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++F+ M   G+ P+  +YG L+DG  K  +   A G Y  M+   V   R+ +  +I
Sbjct: 351 EALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMI 410

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               ++G +D A  +L EM+ +   +DPD +T  AL+      G+   A+E+   I++  
Sbjct: 411 DGLCKNGFLDEAVVLLNEMSKD--GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVG 468

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +     +Y+  I  C + G  + A  +Y+ M  +G   D    + L+     AGKV  A 
Sbjct: 469 LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAE 528

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E ++   + GI    +S+  L+    N+    KA  +++ M  +   PT  T  +L+  L
Sbjct: 529 EFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGL 588

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C G  L +  + L  + ++    +T+ Y+ LL A  +  ++   + L  +  +  ++P+ 
Sbjct: 589 CKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDS 648

Query: 445 VMFKCII-GMCSR 456
             +  +I G+C +
Sbjct: 649 YTYTSLISGLCRK 661



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 188/420 (44%), Gaps = 7/420 (1%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           +R+G I + +++   M   G        +A   +V KS + +   + F K +      P 
Sbjct: 134 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDV-SVWSFLKEMLKRKICPD 192

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++TFN+L++V  +    E +  +++ ++++G       Y T++    K G+  A  E+  
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M + G++ +V TY  LI    ++ ++AK +     MR + + P+ V +N LI      G
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V  A  +L EM +    + P+H+T  AL+    + G    A +++ M+    +  +   
Sbjct: 313 KVLIASQLLNEMLS--FGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + ++   +  +++ A   Y  M + GV    +  + +ID     G ++ A  +L E  
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             GI   I++YS+L+        ++ A E+   +  + L P     + LI   C    L 
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + + +   M   G   +  T+++L+ +  +   V      +     DG++PN V F C+I
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/461 (20%), Positives = 197/461 (42%), Gaps = 24/461 (5%)

Query: 16   GKHANYAHDVSEQLHS---------YNRLI----RQGRISECIDLLEDMERKGLLDMDKV 62
            G H   A    + LH+         YN L+    + G +++ + L  +M ++ +L     
Sbjct: 591  GGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYT 650

Query: 63   YHARFFNVCKSQKAI------KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
            Y +    +C+  K +      KEA     ++PN  + T    +     +   +       
Sbjct: 651  YTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYT--CFVDGMFKAGQWKAGIYFRE 708

Query: 117  LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
             +   G   D      +I   ++ GK++   ++  EM N    PN+ TY  L+ G +K  
Sbjct: 709  QMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRK 768

Query: 177  QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
             V+ +F  Y  +    + PD++  ++L+    +S  ++    +L         V+ D  T
Sbjct: 769  DVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICR--GVEVDRYT 826

Query: 237  IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
               L+  C   G+++ A ++ K++    I    +     ++  ++   ++ +  V  +M+
Sbjct: 827  FNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMS 886

Query: 297  KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            K+G+ P+      LI+     G ++ AF + +E     I    ++ S+++ A +      
Sbjct: 887  KQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKAD 946

Query: 357  KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            +A  L   M  +KL PT+++   L+   C    + + +E+   M + GL  + ++Y++L+
Sbjct: 947  EATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLI 1006

Query: 417  VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
                 K D+ +   L  + K DG + N   +K +I G+ +R
Sbjct: 1007 TGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLAR 1047



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 96/484 (19%), Positives = 189/484 (39%), Gaps = 51/484 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L + G+++E  + +  M   G+L     +         S + +K AF  F    K+  +P
Sbjct: 518 LCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLK-AFSVFDEMTKVGHHP 576

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T  T+  L+           A + L+ +       D  +Y TL+T   KSG +     +F
Sbjct: 577 TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 636

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            EMV   I P+ +TY +LI G  + G+  +A  F      R  NV P++V++   +    
Sbjct: 637 GEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG-NVLPNKVMYTCFVDGMF 695

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G          +M+   H   PD +T  A++   +  G++++  ++   +   N    
Sbjct: 696 KAGQWKAGIYFREQMDNLGHT--PDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPN 753

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-----------------EVFLSALI 311
              Y I ++  S+  D   +  +Y  +   G++PD                 E+ L  L 
Sbjct: 754 LTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILK 813

Query: 312 DFAGHA------------------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            F                      G++  AF++++   + GIS+   +  +++   +   
Sbjct: 814 AFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNH 873

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
            +Q++  +   M    + P       LI  LC    +     V  +M +  +CP  +  S
Sbjct: 874 RFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAES 933

Query: 414 IL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
            +   L  C + D+  + L  + + K   ++P +  F  ++ +C +       L   V+ 
Sbjct: 934 AMVRALAKCGKADEATLLLRFMLKMK---LVPTIASFTTLMHLCCKNGNVIEALELRVVM 990

Query: 471 FNSG 474
            N G
Sbjct: 991 SNCG 994



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 123/270 (45%), Gaps = 16/270 (5%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDV---LAEMNAEVHPVDPDHITIGALMKA 243
           ++R++   P R +   L    G+S  V  A      L   N  V+ +         L++ 
Sbjct: 82  LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDI---------LIRV 132

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVI 301
               G +  + E+++++  Y     P VYT    +    ++G+     S   +M K+ + 
Sbjct: 133 YLREGMIQDSLEIFRLMGLYGF--NPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKIC 190

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD    + LI+     G  E +  ++Q+ +  G +  I++Y++++        ++ A+EL
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            +HMKS  +   V T N LI  LC  +++ K   +L DM+   + PN +TY+ L+     
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  V +   LL++    G+ PN V F  +I
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALI 340



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 123/282 (43%), Gaps = 6/282 (2%)

Query: 175 AGQVAKAFGAY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           +G+ +  FGA     R  N  P   V++ LI    + G +  + ++   M   ++  +P 
Sbjct: 102 SGKSSFVFGALMTTYRLCNSNPS--VYDILIRVYLREGMIQDSLEIFRLMG--LYGFNPS 157

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T  A++ +   +G+        K + K  I      + I IN     G +E +  +  
Sbjct: 158 VYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQ 217

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M K G  P  V  + ++ +    G+ +AA E+L   K++G+   + +Y+ L+     + 
Sbjct: 218 KMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSN 277

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
              K   L   M+   + P   T N LI    +  ++    ++L++M S GL PN +T++
Sbjct: 278 RIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFN 337

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            L+     + + +  L +    +  G+ P+ V +  ++ G+C
Sbjct: 338 ALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLC 379


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 164/338 (48%), Gaps = 4/338 (1%)

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           AG   +  +Y++LI    +SGK+    E+F E +    +PN+  Y A+ID C+K G    
Sbjct: 150 AGFGNNVFVYSSLICAYGRSGKLAKAVEIF-EAMKVVCKPNLVVYNAVIDACSKGGDYPT 208

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A   +  M  + + PDR+ FN LI+A G++   +    + AEM  E   +  D +T   L
Sbjct: 209 ALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEM--EERGIARDDVTYNTL 266

Query: 241 MKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           +      GQ+     + + + K + I+ +   Y+  I+  ++ G    A +++ +M  + 
Sbjct: 267 IATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQN 326

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           V PD +  + ++D     G  + A  I +  +  G +  I++Y++L+ +      +++A+
Sbjct: 327 VEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAM 386

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            L E MK     P + T +ALI A C        M +  D+K  GL P+ + YS L+  C
Sbjct: 387 SLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGC 446

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
            +    +  L LL +  ++G+ PN++ +  ++    R+
Sbjct: 447 CKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQ 484



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 178/410 (43%), Gaps = 12/410 (2%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           K  KA+ E F   K+V  P L  +N ++  C+   D   A ++ R + E G+  D   + 
Sbjct: 171 KLAKAV-EIFEAMKVVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFN 229

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM-RS 190
           TLI+   ++ + +    +F EM   GI  +  TY  LI    + GQ+         M +S
Sbjct: 230 TLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKS 289

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
             ++P  + ++ +I    + G    A  +  EM  +   V+PD I    ++   A  G  
Sbjct: 290 SGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQ--NVEPDGICYNTMVDIHARLGNF 347

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D A  + + + +         Y   ++   + G +  A S+ ++M ++G  P+ +  SAL
Sbjct: 348 DEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSAL 407

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID     G    A  + Q+ K  G+   ++ YS+L+  C    +  +AL L E M    +
Sbjct: 408 IDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGI 467

Query: 371 KPTVSTMNALITA-----LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD- 424
           +P V T N+L+ A     L      PK    L    ++ L P+       LV  ++K   
Sbjct: 468 RPNVITYNSLLDAYGRQCLMVRKNFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQAL 527

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472
           V     +  +  ++GV PN+V F  I+  CS     E A +L E +  F+
Sbjct: 528 VLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASSLLEAMRVFD 577



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 164/410 (40%), Gaps = 57/410 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---------- 76
           ++N LI    R  R  EC  +  +ME +G+   D  Y+      C+  +           
Sbjct: 227 TFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETM 286

Query: 77  -------------------------IKEAFRFFKLVPN----PTLSTFNMLMSVCASSKD 107
                                      EA   F+ + N    P    +N ++ + A   +
Sbjct: 287 AKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGN 346

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
            + A  + R ++EAG   D   Y  L+ +  K GK      +  EM   G  PN+ TY A
Sbjct: 347 FDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSA 406

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           LID   K G    A   +  ++   ++PD V+++ L+  C ++G+ D A  +L EM    
Sbjct: 407 LIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVDGCCKNGSPDEALALLEEMAD-- 464

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----- 282
           + + P+ IT  +L+ A     Q    R+ +  +  + +     +   +++   Q+     
Sbjct: 465 NGIRPNVITYNSLLDAYGR--QCLMVRKNFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPK 522

Query: 283 ---GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
                   A  V+ +M K GV P+ V  S++++   H   VE A  +L+  +     V  
Sbjct: 523 QKQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASSLLEAMRVFDGRVYG 582

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
           +++  LMG     + W+ A  L+  + ++     V+  NAL   L   +Q
Sbjct: 583 VTHGLLMGF--RIRVWRDAETLFNELTTLGHNTAVAFYNALTDVLWHFEQ 630



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 159/348 (45%), Gaps = 31/348 (8%)

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPE-VYTIAINCCSQTGDW 285
           H + PD +    +++   ++GQ ++  + +  M+ + N++   + V +  I+   + G  
Sbjct: 80  HLLGPDDLPF--IVRELGHSGQWEKVVKSFDWMVLQQNLRSQWDKVTSTIISSLGRLGRS 137

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           ++A  ++D     G   +    S+LI   G +GK+  A EI  EA        ++ Y+++
Sbjct: 138 DWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIF-EAMKVVCKPNLVVYNAV 196

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           + ACS   ++  AL ++  M    + P   T N LI+A    ++  +   + ++M+  G+
Sbjct: 197 IDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI 256

Query: 406 CPNTITYSILLVACERKDDVEVGLMLL-SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
             + +TY+ L+    R   + +G  L+ + AK  G+ P+++ +  +I      Y K    
Sbjct: 257 ARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMID----GYAKLGLA 312

Query: 465 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL 524
           +E +  F   R Q           V  + I   T+  V++ ++ LG     ++  IR R 
Sbjct: 313 HEAIALFQEMRNQ----------NVEPDGICYNTM--VDIHAR-LGNFDEAHS--IR-RA 356

Query: 525 VENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVPCV 570
           +E  G + D +  +   +L+D +G+      A SLLEE    G  P +
Sbjct: 357 MEEAGFAKDIVTYN---ALLDSYGKQGKFREAMSLLEEMKQRGASPNI 401


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/465 (23%), Positives = 198/465 (42%), Gaps = 45/465 (9%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN +I      G+      LL+ ++ +G +     +++    + K +K + EA   F+
Sbjct: 323 YAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRK-VDEALTLFE 381

Query: 86  LV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +     P  ST+N+++ +   +   E A+ +   ++ AGL  +      ++    K+ K
Sbjct: 382 AMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKK 441

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            +  +E+F      G  PN  TY +LIDG  K G V  A+  +  M       + VV+ +
Sbjct: 442 FEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTS 501

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI      G  +    +  EMN       PD   +   M     AG V++ R +++ I  
Sbjct: 502 LIRNFFMHGRKEDGHKIFKEMNR--RGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKG 559

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           Y        Y+I I+  ++ G      S++  M ++G   D    +A++D    +GK++ 
Sbjct: 560 YGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDK 619

Query: 323 AFEIL-----------------------------------QEAKNQGISVGIISYSSLMG 347
           A+E+L                                   +EAK++GI + +I YSSL+ 
Sbjct: 620 AYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLID 679

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                    +A  + E M    L P V T N+L+ AL   +++ + +     MK +   P
Sbjct: 680 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSP 739

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           NT TYSIL+    R        +   + ++ G++PN+V +  +I 
Sbjct: 740 NTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIA 784



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 195/436 (44%), Gaps = 11/436 (2%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D      +YN +I      G++ E   + ++ME  GL       +     +CK++K  + 
Sbjct: 386 DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKK-FEP 444

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+  F+       NP   T+  L+       + + A+++   + + G  A+  +YT+LI 
Sbjct: 445 AYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIR 504

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
                G+ +   ++F EM   G +P++      +D   KAG V K    +  ++     P
Sbjct: 505 NFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLP 564

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D   ++ LI    ++G       +   M  +   +D       A++     +G++D+A E
Sbjct: 565 DVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDAR--AYNAVVDGFCKSGKLDKAYE 622

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           V + +    +  T   Y   I+  ++    + A  ++++   KG+  + +  S+LID  G
Sbjct: 623 VLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFG 682

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+++ A+ IL+E   +G++  + +++SLM A   A+   +AL  ++ MK +K  P   
Sbjct: 683 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTY 742

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T + LI  LC   +  K      +M+  GL PN +TY+ ++    +  ++     L  + 
Sbjct: 743 TYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERF 802

Query: 436 KEDGVIPNLVMFKCII 451
           K +G  P+   F  +I
Sbjct: 803 KANGGTPDAASFNALI 818



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 118/540 (21%), Positives = 212/540 (39%), Gaps = 62/540 (11%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +L   P  S + +L+   A ++  E A ++LR +QE G +    L+TTL+   A+ G+V+
Sbjct: 175 RLKFRPAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVE 234

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  E+  + +EP++  Y   ID   KAG V  A+  +  ++S+ +KPD V + ++I
Sbjct: 235 GALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMI 294

Query: 205 TACGQSGAVDRAFDVLAEMNAE-------------------------VHPVD-------- 231
               ++G +  A ++  +M  E                            +D        
Sbjct: 295 WVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCI 354

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P  ++  +++       +VD A  +++ + K + +     Y I I+     G  E A  +
Sbjct: 355 PSVVSFNSILTCLGKKRKVDEALTLFEAMKK-DAEPNSSTYNIIIDMLCMAGKVEEAYMI 413

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
            D+M   G+ P+ + ++ ++D    A K E A+E+ + A  +G +   ++Y SL+     
Sbjct: 414 RDEMEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGK 473

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
             N   A  L+E+M             +LI       +     ++  +M   G  P+   
Sbjct: 474 KGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTL 533

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE------------ 459
            +  +    +  DVE G  +    K  G +P++  +  +I   ++  +            
Sbjct: 534 LNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMK 593

Query: 460 ------KARTLNEHVLSF-NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
                  AR  N  V  F  SG+          A  V  E  V    PTV     ++  L
Sbjct: 594 QQGFALDARAYNAVVDGFCKSGK-------LDKAYEVLEEMKVKRVPPTVATYGSIIDGL 646

Query: 513 QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCV 570
                 D    L E        L      SLIDGFG+      A+ +LEE    G+ P V
Sbjct: 647 AKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 706



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 174/385 (45%), Gaps = 54/385 (14%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKG------LLD--MDKVYHARFFNVCKSQKAIKE 79
           Y  LIR     GR  +   + ++M R+G      LL+  MD V+ A      +  +AI E
Sbjct: 499 YTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKA---GDVEKGRAIFE 555

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             + +  +P+  + ++++L+     +  +     +   +++ G   D + Y  ++    K
Sbjct: 556 DIKGYGFLPD--VRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCK 613

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           SGK+D  +EV  EM    + P V TYG++IDG AK  ++ +A+  +   +SK ++ + +V
Sbjct: 614 SGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIV 673

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +++LI   G+ G +D A+ +L EM  +   + P+  T  +LM A   A +++ A   ++ 
Sbjct: 674 YSSLIDGFGKVGRIDEAYLILEEMMKK--GLTPNVYTWNSLMDALVKAEEINEALICFQS 731

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +  +K +P  YT +I                                 LI+      K
Sbjct: 732 MKE--MKCSPNTYTYSI---------------------------------LINGLCRVQK 756

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
              AF   QE + QG+   +++Y++++   +   N   A  L+E  K+    P  ++ NA
Sbjct: 757 YNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGTPDAASFNA 816

Query: 380 LITALCDGDQLPKTMEVLSDMKSLG 404
           LI  +   ++  +   V  + +  G
Sbjct: 817 LIEGMSHANRAIEAYHVFEETRLKG 841



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 160/365 (43%), Gaps = 6/365 (1%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VPNP  +    L+S    ++  + A +V+  ++    +     YT LI   A++ + +  
Sbjct: 145 VPNPACAD---LVSALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERA 201

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E+  +M   G E  V  +  L+   A+ G+V  A      ++   ++PD V++N  I  
Sbjct: 202 LELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDC 261

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            G++G VD A+    E+ ++   + PD ++  +++     AG++  A E++  +      
Sbjct: 262 FGKAGNVDMAWKFFHELKSQ--GLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAV 319

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y   I      G +E A  + D + ++G IP  V  ++++   G   KV+ A  +
Sbjct: 320 PCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTL 379

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             EA  +       +Y+ ++     A   ++A  + + M+   L P + T+N ++  LC 
Sbjct: 380 F-EAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCK 438

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +     E+       G  PN++TY  L+    +K +V+    L     + G   N V+
Sbjct: 439 AKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVV 498

Query: 447 FKCII 451
           +  +I
Sbjct: 499 YTSLI 503



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 3/251 (1%)

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L++A  ++  +D A  V+A M        P       L+ A A A Q +RA E+ + + +
Sbjct: 153 LVSALVRTRRLDDAERVIAAMRR--LKFRPAFSAYTVLIGAMAEARQPERALELLRQMQE 210

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              +    ++T  +   ++ G  E A ++ D++    + PD V  +  ID  G AG V+ 
Sbjct: 211 VGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDM 270

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A++   E K+QG+    +SY+S++     A    +A EL+  M++ +  P     N +I 
Sbjct: 271 AWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIM 330

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
                 Q     ++L  +K  G  P+ ++++ +L    +K  V+  L L    K+D   P
Sbjct: 331 GYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAE-P 389

Query: 443 NLVMFKCIIGM 453
           N   +  II M
Sbjct: 390 NSSTYNIIIDM 400


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 176/379 (46%), Gaps = 19/379 (5%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++T N    +C   K  + AFQ+++++   G   D   Y+ +IT   ++ KV+  F +F 
Sbjct: 254 VNTANFARCLCGMGK-FDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQ 312

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM + G+ P+V+TY  LID   KAG + +A   +  MRS     + V + AL+ A  ++ 
Sbjct: 313 EMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAK 372

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPE 270
            + +A D+   M     P  P+ IT  AL+     AG++ +A EVY K+I   +  G+  
Sbjct: 373 QLPQASDIFNRMIDAGCP--PNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDF 430

Query: 271 VY------TIAINCCSQTGDWEFACSVY---------DDMTKKGVIPDEVFLSALIDFAG 315
            +      +IA N  +     +  C  +         D M   G  P+ +   ALID   
Sbjct: 431 YFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFC 490

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             GK++ A E+       G    + +Y+SL+ A    +    A+++   M      P V 
Sbjct: 491 KVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVV 550

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T  A+I  LC   +  K +++LS M+  G  PN +TY+ L+    +   V++ L L  Q 
Sbjct: 551 TYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQM 610

Query: 436 KEDGVIPNLVMFKCIIGMC 454
              G  PN V ++ +I  C
Sbjct: 611 STKGCAPNYVTYRVLINHC 629



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 115/508 (22%), Positives = 203/508 (39%), Gaps = 94/508 (18%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L   G+      +++ M  KG +     Y      +C++ K +++AF  F+ +     NP
Sbjct: 263 LCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMK-VEKAFLLFQEMKSVGVNP 321

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T+ +L+     +   E A      ++  G  A+   YT L+    K+ ++    ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIF 381

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM----------------RSKNVK 194
           + M++AG  PN  TY AL+DG  KAG++ KA   Y  +                 + ++ 
Sbjct: 382 NRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIA 441

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ V + ALI    ++  V  A ++L  M +  +  +P+HI   AL+      G++D A+
Sbjct: 442 PNVVTYGALIDGLCKAHKVVDAQELLDAMLS--NGCEPNHIIYDALIDGFCKVGKIDNAQ 499

Query: 255 EVY---------KMIHKYNI------------------------KGTPEV--YTIAINCC 279
           EV+           +H Y                            TP V  YT  I+  
Sbjct: 500 EVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGL 559

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            + G+ + A  +   M +KG  P+ V  +ALID  G +GKV+ + ++  +   +G +   
Sbjct: 560 CRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNY 619

Query: 340 ISYSSLMGACSNA---------------KNWQKALELY------------------EHMK 366
           ++Y  L+  C  A                 W K L+ Y                  E ++
Sbjct: 620 VTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELE 679

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT---YSILLVACERKD 423
           S    P       LI       +L + +E+  +M  L    N  +   Y+ L+ A     
Sbjct: 680 SHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLAS 739

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +E    L S+    GV+P L +F C+I
Sbjct: 740 QLEKAFELYSEITRKGVVPELSVFVCLI 767



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 143/329 (43%), Gaps = 10/329 (3%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            Y A    +CK+ K +        ++ N   P    ++ L+         + A +V   +
Sbjct: 446 TYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRM 505

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
            + G       YT+LI    K  ++D   +V  +MV +   PNV TY A+IDG  + G+ 
Sbjct: 506 SKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGEC 565

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            KA     +M  K   P+ V + ALI   G+SG VD +  +  +M+ +     P+++T  
Sbjct: 566 QKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTK--GCAPNYVTYR 623

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+  C  AG +D A  +   + +       + Y   +   S+   +  +  + +++   
Sbjct: 624 VLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSK--KFIASLGLLEELESH 681

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS---YSSLMGACSNAKNW 355
           G +P       LID    AG++E A E+ +E      S+ I S   Y+SL+ A   A   
Sbjct: 682 GTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQL 741

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITAL 384
           +KA ELY  +    + P +S    LI  L
Sbjct: 742 EKAFELYSEITRKGVVPELSVFVCLIKGL 770



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 162/381 (42%), Gaps = 28/381 (7%)

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
           L +++    K D  L T +I+   ++   D      H M      PNV TY  L+ G  K
Sbjct: 95  LVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLK 154

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
             Q+        +M  +   P+  +FN+L+ +   +     A+ +L  M     P  P +
Sbjct: 155 KKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCP--PGY 212

Query: 235 ITIGALMKACANAGQVDR------AREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
           +     + +     ++        A +VY +M+    +         A  C    G ++ 
Sbjct: 213 VAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFA-RCLCGMGKFDM 271

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  +   M  KG +PD    S +I F   A KVE AF + QE K+ G++  + +Y+ L+ 
Sbjct: 272 AFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILID 331

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           +   A   ++A   ++ M+SI     V T  AL+ A     QLP+  ++ + M   G  P
Sbjct: 332 SFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPP 391

Query: 408 NTITYSILL----------VACERKDDV-----EVGLMLLSQAKE-DGVIPNLVMFKCII 451
           NTITYS L+           ACE    +      VG     + K  D + PN+V +  +I
Sbjct: 392 NTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALI 451

Query: 452 -GMC-SRRYEKARTLNEHVLS 470
            G+C + +   A+ L + +LS
Sbjct: 452 DGLCKAHKVVDAQELLDAMLS 472



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 149/366 (40%), Gaps = 46/366 (12%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           Y  GKH +    ++  + +Y  LI    +  ++ +  +LL+ M   G      +Y A   
Sbjct: 431 YFEGKHTD---SIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALID 487

Query: 69  NVCKSQKA--IKEAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
             CK  K    +E F R  K    PT+ T+  L+      +  + A +VL  + E+    
Sbjct: 488 GFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTP 547

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           +   YT +I    + G+     ++   M   G  PNV TY ALIDG  K+G+V  +   +
Sbjct: 548 NVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLF 607

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-------------------- 225
             M +K   P+ V +  LI  C  +G +D A  +L+EM                      
Sbjct: 608 IQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKK 667

Query: 226 -----------EVHPVDPDHITIGALMKACANAGQVDRAREVYK----MIHKYNIKGTPE 270
                      E H   P     G L+   + AG+++ A E++K    +    NI  + +
Sbjct: 668 FIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNIT-SKD 726

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           +YT  I         E A  +Y ++T+KGV+P+      LI       K   A ++    
Sbjct: 727 MYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSI 786

Query: 331 KNQGIS 336
            ++G++
Sbjct: 787 CDEGVN 792



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/377 (18%), Positives = 138/377 (36%), Gaps = 76/377 (20%)

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAF----------------------------- 182
           E+ + G  P+  TY AL+   A AGQ+   F                             
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 183 ---GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
               A  ++  ++ K D V+   +I+   ++   D A   L  M    +   P+ +T   
Sbjct: 90  RWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRC--NSCIPNVVTYRT 147

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+       Q+   + +  M+ K      P ++   ++      D+ +A  +   M   G
Sbjct: 148 LLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCG 207

Query: 300 VIPD----EVFLSAL-------------------------------IDFAGHA------G 318
             P      +F+ ++                               ++ A  A      G
Sbjct: 208 CPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMG 267

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           K + AF+I++    +G      +YS ++     A   +KA  L++ MKS+ + P V T  
Sbjct: 268 KFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYT 327

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI + C    + +      +M+S+G   N +TY+ LL A  +   +     + ++  + 
Sbjct: 328 ILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDA 387

Query: 439 GVIPNLVMFKCII-GMC 454
           G  PN + +  ++ G+C
Sbjct: 388 GCPPNTITYSALVDGLC 404



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 125/307 (40%), Gaps = 36/307 (11%)

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G  P     +AL+     AG+++  F + +E    G  +   +      A      W  A
Sbjct: 35  GYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDA 94

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           L + E  +  KL   + T   +I+ L +     + +  L  M+     PN +TY  LL  
Sbjct: 95  LVMIER-EDFKLDTVLCTQ--MISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTG 151

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRP 476
             +K  +     +++   ++G  PN  +F  ++   C +R Y  A  L + +   + G P
Sbjct: 152 FLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMA--DCGCP 209

Query: 477 QIENKWTSLALMVYREAIVAG-TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 535
                   +A  ++  +I  G  +P+ ++++             + E++ E +  S+  L
Sbjct: 210 P-----GYVAYNIFIGSICGGEELPSPDLLA-------------LAEKVYEEMLASSCVL 251

Query: 536 KR---SNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSF--KEIPVVVDARKLEIHTAK 590
            +   +N    + G G++D  AF +++     G VP  S   K I  + +A K+E    K
Sbjct: 252 NKVNTANFARCLCGMGKFD-MAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVE----K 306

Query: 591 VSLSFQH 597
             L FQ 
Sbjct: 307 AFLLFQE 313


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 187/403 (46%), Gaps = 13/403 (3%)

Query: 48  LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCA 103
           L  M + GL      +      +C   K I +A + F    K+   P+L T+  ++    
Sbjct: 129 LGKMFKLGLQPTHVTFGTLLNGLCSKAKII-DAVKLFDEIGKMGFAPSLITYTTIIKGLC 187

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
               +  A Q+L+ ++E G K D   Y T+I +  K  + +     F EMV+ GI PNV 
Sbjct: 188 KIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVV 247

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV---DRAFDVL 220
           TY +++ G    GQ+ +A   +  M  +NV P+ V F  L+    + G +    R F+++
Sbjct: 248 TYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMM 307

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
            E     + V+PD  T  ALM       Q+D A++++ ++       +  VY I IN   
Sbjct: 308 TE-----NGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHC 362

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           ++     A ++  +M  + + PD V  S L+     AG+ + A ++ +E  + G+    I
Sbjct: 363 KSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSI 422

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +YS L+       +  +A  L + M+  K++P +   N LI  +C+  +L    E+ S++
Sbjct: 423 TYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNL 482

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
              G+ P+ +TY++++    ++        +  +   +G +PN
Sbjct: 483 FVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPN 525



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 180/380 (47%), Gaps = 8/380 (2%)

Query: 90  PTLSTFNMLMS-VCASSKDS-EGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAM 146
           P + T  +L++ +C S++D    AF  L  + + GL+     + TL+   C+K+  +DA+
Sbjct: 102 PNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAV 161

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++F E+   G  P++ TY  +I G  K G    A      M  K  KPD V +N +I +
Sbjct: 162 -KLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDS 220

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +    + A    +EM  +  P  P+ +T  +++    N GQ++ A  ++K +   N+ 
Sbjct: 221 LCKDRRANEAMYFFSEMVDQGIP--PNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVM 278

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                +TI ++   + G    A  V++ MT+ GV PD    SAL+D      +++ A ++
Sbjct: 279 PNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKL 338

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
                 +G +  +  Y+ L+     ++   +A  L   M    L P   T + L+   C 
Sbjct: 339 FDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQ 398

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +     ++  +M S GL P++ITYSILL    +   ++    LL   +E  + P++ +
Sbjct: 399 AGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICI 458

Query: 447 FKCII-GMCS-RRYEKARTL 464
           +  +I GMC+  + E AR L
Sbjct: 459 YNILIQGMCNFGKLEAAREL 478



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 145/331 (43%), Gaps = 12/331 (3%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           S  LH +  L   G+++E   L + M  + ++     +      +CK +  I EA R F+
Sbjct: 250 SSILHGFCNL---GQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCK-EGMILEARRVFE 305

Query: 86  LVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           ++      P   T++ LM   C  S+  E A ++  ++   G     ++Y  LI    KS
Sbjct: 306 MMTENGVEPDAYTYSALMDGYCLQSQMDE-AQKLFDIMVGKGFAPSVRVYNILINGHCKS 364

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            +++    +  EM +  + P+  TY  L+ G  +AG+   A   +  M S  + PD + +
Sbjct: 365 RRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITY 424

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + L+    + G +D AF +L  M      ++P       L++   N G+++ ARE++  +
Sbjct: 425 SILLDGLCKHGHLDEAFRLLKAMQES--KIEPHICIYNILIQGMCNFGKLEAARELFSNL 482

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               I+ +   YT+ I+   + G    AC ++  M   G +P+    +  I      G  
Sbjct: 483 FVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDP 542

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSN 351
             A  +++E   +G S    ++  L+   SN
Sbjct: 543 SNAVRLIEEMVGRGFSADSSTFQMLLDLESN 573



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 146/367 (39%), Gaps = 46/367 (12%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYG 186
           ++  L+ +  K      +  +  +M  + I PNV+T   LI+    + +  V  AF A G
Sbjct: 71  VFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALG 130

Query: 187 IMRSKNVKPDRVVFNALITA-CGQSGAVD--RAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            M    ++P  V F  L+   C ++  +D  + FD + +M        P  IT   ++K 
Sbjct: 131 KMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMG-----FAPSLITYTTIIKG 185

Query: 244 CANAGQVDRAREVYKMIHK---------YNI-----------------------KGTPE- 270
               G    A ++ K + +         YN                        +G P  
Sbjct: 186 LCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPN 245

Query: 271 --VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+  ++     G    A S++  M  + V+P+ V  + L+D     G +  A  + +
Sbjct: 246 VVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFE 305

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
                G+     +YS+LM          +A +L++ M      P+V   N LI   C   
Sbjct: 306 MMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSR 365

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L +   +LS+M    L P+T+TYS L+    +    +V   L  +    G++P+ + + 
Sbjct: 366 RLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYS 425

Query: 449 CII-GMC 454
            ++ G+C
Sbjct: 426 ILLDGLC 432



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 83/185 (44%), Gaps = 14/185 (7%)

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC--DGDQLPKTMEV 396
           ++ ++ L+G+    K++   + L + M    ++P V T+  LI  LC  + D +      
Sbjct: 69  VVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSA 128

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC- 454
           L  M  LGL P  +T+  LL     K  +   + L  +  + G  P+L+ +  II G+C 
Sbjct: 129 LGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCK 188

Query: 455 ----SRRYEKARTLNEH-----VLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEV 504
               +   +  + + E      V+++N+    + +++  + A+  + E +  G  P V  
Sbjct: 189 IGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVT 248

Query: 505 VSKVL 509
            S +L
Sbjct: 249 YSSIL 253


>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 163/365 (44%), Gaps = 2/365 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +  ++ +M       D +    V    +E GL      Y  LI   AK GKV    EV  
Sbjct: 451 IDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSK 510

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM +AGI+ N+ TY  LI+G  K    A AF  +  +    +KPD V++N +ITA    G
Sbjct: 511 EMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMG 570

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA   + EM  + H   P   T   ++   A  G++ +A +V+ M+       T   
Sbjct: 571 KMDRAVCTVKEMQKQRHK--PTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHT 628

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I    +    E A  + D+MT  GV P+E   + ++      G    AF    + +
Sbjct: 629 YNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLR 688

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           ++G+ + + +Y +L+ AC  +   Q AL + + M +  +       N LI        + 
Sbjct: 689 DEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIW 748

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  MK  G+ P+  TY+  + AC +  D++     + + K  GV PN+  +  +I
Sbjct: 749 EAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLI 808

Query: 452 GMCSR 456
              +R
Sbjct: 809 NGWAR 813



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 151/327 (46%), Gaps = 2/327 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ML++     KD   AF +   + + G+K D  LY  +IT     GK+D       
Sbjct: 521 MKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVK 580

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM     +P   T+  +I G A+ G++ KA   + +MR     P    +NALI    +  
Sbjct: 581 EMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKR 640

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +++A  +L EM   +  V P+  T   +M   A+ G   +A   +  +    ++     
Sbjct: 641 KMEKAEQILDEMT--LAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYT 698

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M+ + +  +    + LID     G +  A +++Q+ K
Sbjct: 699 YEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMK 758

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I +Y+S + ACS A + Q+A +  E MKS+ +KP V T   LI          
Sbjct: 759 REGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPE 818

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVA 418
           K +    +MK  GL P+   Y  L+ +
Sbjct: 819 KALSCFEEMKLSGLKPDRAVYHCLMTS 845



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 116/525 (22%), Positives = 217/525 (41%), Gaps = 64/525 (12%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+   + ++++      D   A +    ++  G++    +YT LI   A    +
Sbjct: 303 FERIKKPSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDM 362

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +       +M   GIE ++ TY  L+ G AK G    A   +   + K+   + +++  +
Sbjct: 363 EEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNI 422

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  Q   +D+A  ++ EM  E    P+D                              
Sbjct: 423 IYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGL 482

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  IT G L+   A  G+V +A EV K +    IK   + Y++ IN   +  DW  A +
Sbjct: 483 NPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFA 542

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +++D+ K G+ PD V  + +I      GK++ A   ++E + Q       ++  ++   +
Sbjct: 543 IFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFA 602

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
                +KAL++++ M+     PTV T NALI  L +  ++ K  ++L +M   G+ PN  
Sbjct: 603 RKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEH 662

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
           TY+ ++       D        ++ +++G+  ++  ++ ++  C +              
Sbjct: 663 TYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCK-------------- 708

Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE-----RLV 525
             SGR Q        AL V +E + A  IP    +  +L         DI E     + +
Sbjct: 709 --SGRMQS-------ALAVTKE-MSAQNIPRNTFIYNIL-IDGWARRGDIWEAADLMQQM 757

Query: 526 ENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
           +  GV  D    ++  +     G+   RA   +EE  S G+ P V
Sbjct: 758 KREGVQPDIHTYTSFINACSKAGDMQ-RATKTIEEMKSVGVKPNV 801



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 160/372 (43%), Gaps = 42/372 (11%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKS 73
           +HA   H++       N  ++    +    + ED+ + G+     +Y+     F  + K 
Sbjct: 513 EHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKM 572

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A+       K    PT  TF  ++   A   + + A  V  +++ +G       Y  L
Sbjct: 573 DRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNAL 632

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    +  K++   ++  EM  AG+ PN HTY  ++ G A  G   KAF  +  +R + +
Sbjct: 633 ILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGL 692

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           + D   + AL+ AC +SG +  A  V  EM+A+                           
Sbjct: 693 QLDVYTYEALLKACCKSGRMQSALAVTKEMSAQ--------------------------- 725

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALID 312
                     NI     +Y I I+  ++ GD WE A  +   M ++GV PD    ++ I+
Sbjct: 726 ----------NIPRNTFIYNILIDGWARRGDIWE-AADLMQQMKREGVQPDIHTYTSFIN 774

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               AG ++ A + ++E K+ G+   + +Y++L+   + A   +KAL  +E MK   LKP
Sbjct: 775 ACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKP 834

Query: 373 TVSTMNALITAL 384
             +  + L+T+L
Sbjct: 835 DRAVYHCLMTSL 846



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 36/162 (22%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G I E  DL++ M+R+G+                     
Sbjct: 724 AQNIPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGV--------------------- 762

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   ++ C+ + D + A + +  ++  G+K + K YTTLI   
Sbjct: 763 -----------QPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGW 811

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           A++   +     F EM  +G++P+   Y  L+        VA
Sbjct: 812 ARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVA 853


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 198/433 (45%), Gaps = 11/433 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFF--- 84
           LH Y    ++GR    I+LL+ M+ KG+ D D   Y+    ++C+S +  K         
Sbjct: 235 LHWY---CKKGRFKAAIELLDHMKSKGV-DADVCTYNMLIHDLCRSNRIAKGYLLLRDMR 290

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K + +P   T+N L++  ++      A Q+L  +   GL  +   +  LI      G   
Sbjct: 291 KRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFK 350

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++F+ M   G+ P+  +YG L+DG  K  +   A G Y  M+   V   R+ +  +I
Sbjct: 351 EALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMI 410

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               ++G +D A  +L EM+ +   +DPD +T  AL+      G+   A+E+   I++  
Sbjct: 411 DGLCKNGFLDEAVVLLNEMSKD--GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVG 468

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +     +Y+  I  C + G  + A  +Y+ M  +G   D    + L+     AGKV  A 
Sbjct: 469 LSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAE 528

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E ++   + GI    +S+  L+    N+    KA  +++ M  +   PT  T  +L+  L
Sbjct: 529 EFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGL 588

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C G  L +  + L  + ++    +T+ Y+ LL A  +  ++   + L  +  +  ++P+ 
Sbjct: 589 CKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDS 648

Query: 445 VMFKCII-GMCSR 456
             +  +I G+C +
Sbjct: 649 YTYTSLISGLCRK 661



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 188/420 (44%), Gaps = 7/420 (1%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           +R+G I + +++   M   G        +A   +V KS + +   + F K +      P 
Sbjct: 134 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDV-SVWSFLKEMLKRKICPD 192

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++TFN+L++V  +    E +  +++ ++++G       Y T++    K G+  A  E+  
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M + G++ +V TY  LI    ++ ++AK +     MR + + P+ V +N LI      G
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V  A  +L EM +    + P+H+T  AL+    + G    A +++ M+    +  +   
Sbjct: 313 KVLIASQLLNEMLS--FGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + ++   +  +++ A   Y  M + GV    +  + +ID     G ++ A  +L E  
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             GI   I++YS+L+        ++ A E+   +  + L P     + LI   C    L 
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + + +   M   G   +  T+++L+ +  +   V      +     DG++PN V F C+I
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/461 (20%), Positives = 197/461 (42%), Gaps = 24/461 (5%)

Query: 16   GKHANYAHDVSEQLHS---------YNRLI----RQGRISECIDLLEDMERKGLLDMDKV 62
            G H   A    + LH+         YN L+    + G +++ + L  +M ++ +L     
Sbjct: 591  GGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYT 650

Query: 63   YHARFFNVCKSQKAI------KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
            Y +    +C+  K +      KEA     ++PN  + T    +     +   +       
Sbjct: 651  YTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYT--CFVDGMFKAGQWKAGIYFRE 708

Query: 117  LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
             +   G   D      +I   ++ GK++   ++  EM N    PN+ TY  L+ G +K  
Sbjct: 709  QMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRK 768

Query: 177  QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
             V+ +F  Y  +    + PD++  ++L+    +S  ++    +L         V+ D  T
Sbjct: 769  DVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICR--GVEVDRYT 826

Query: 237  IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
               L+  C   G+++ A ++ K++    I    +     ++  ++   ++ +  V  +M+
Sbjct: 827  FNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMS 886

Query: 297  KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            K+G+ P+      LI+     G ++ AF + +E     I    ++ S+++ A +      
Sbjct: 887  KQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKAD 946

Query: 357  KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            +A  L   M  +KL PT+++   L+   C    + + +E+   M + GL  + ++Y++L+
Sbjct: 947  EATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLI 1006

Query: 417  VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
                 K D+ +   L  + K DG + N   +K +I G+ +R
Sbjct: 1007 TGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLAR 1047



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 96/484 (19%), Positives = 189/484 (39%), Gaps = 51/484 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L + G+++E  + +  M   G+L     +         S + +K AF  F    K+  +P
Sbjct: 518 LCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLK-AFSVFDEMTKVGHHP 576

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T  T+  L+           A + L+ +       D  +Y TL+T   KSG +     +F
Sbjct: 577 TFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLF 636

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            EMV   I P+ +TY +LI G  + G+  +A  F      R  NV P++V++   +    
Sbjct: 637 GEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARG-NVLPNKVMYTCFVDGMF 695

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G          +M+   H   PD +T  A++   +  G++++  ++   +   N    
Sbjct: 696 KAGQWKAGIYFREQMDNLGHT--PDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPN 753

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-----------------EVFLSALI 311
              Y I ++  S+  D   +  +Y  +   G++PD                 E+ L  L 
Sbjct: 754 LTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILK 813

Query: 312 DFAGHA------------------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            F                      G++  AF++++   + GIS+   +  +++   +   
Sbjct: 814 AFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNH 873

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
            +Q++  +   M    + P       LI  LC    +     V  +M +  +CP  +  S
Sbjct: 874 RFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAES 933

Query: 414 IL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
            +   L  C + D+  + L  + + K   ++P +  F  ++ +C +       L   V+ 
Sbjct: 934 AMVRALAKCGKADEATLLLRFMLKMK---LVPTIASFTTLMHLCCKNGNVIEALELRVVM 990

Query: 471 FNSG 474
            N G
Sbjct: 991 SNCG 994



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 123/270 (45%), Gaps = 16/270 (5%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDV---LAEMNAEVHPVDPDHITIGALMKA 243
           ++R++   P R +   L    G+S  V  A      L   N  V+ +         L++ 
Sbjct: 82  LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDI---------LIRV 132

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVI 301
               G +  + E+++++  Y     P VYT    +    ++G+     S   +M K+ + 
Sbjct: 133 YLREGMIQDSLEIFRLMGLYGF--NPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKIC 190

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD    + LI+     G  E +  ++Q+ +  G +  I++Y++++        ++ A+EL
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            +HMKS  +   V T N LI  LC  +++ K   +L DM+   + PN +TY+ L+     
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  V +   LL++    G+ PN V F  +I
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALI 340



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 123/282 (43%), Gaps = 6/282 (2%)

Query: 175 AGQVAKAFGAY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           +G+ +  FGA     R  N  P   V++ LI    + G +  + ++   M   ++  +P 
Sbjct: 102 SGKSSFVFGALMTTYRLCNSNPS--VYDILIRVYLREGMIQDSLEIFRLMG--LYGFNPS 157

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T  A++ +   +G+        K + K  I      + I IN     G +E +  +  
Sbjct: 158 VYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQ 217

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M K G  P  V  + ++ +    G+ +AA E+L   K++G+   + +Y+ L+     + 
Sbjct: 218 KMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSN 277

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
              K   L   M+   + P   T N LI    +  ++    ++L++M S GL PN +T++
Sbjct: 278 RIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFN 337

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            L+     + + +  L +    +  G+ P+ V +  ++ G+C
Sbjct: 338 ALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLC 379


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 129/537 (24%), Positives = 241/537 (44%), Gaps = 53/537 (9%)

Query: 55  GLLDMDKVYHARFFNVCKSQKAIK----EAFR-FFKLVPNPTLSTFNMLMSVCASSKDSE 109
           G+L  + V  A    + +S+ ++K    E +R   +   +P + T+N+L+    S  + +
Sbjct: 176 GVLSYNSVLDA----IVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQ 231

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
                   ++  G   +   Y TLI    K G++D  F +   M + G++PN+ +Y  +I
Sbjct: 232 KGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVII 291

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
           +G  + G + +A+     M  K   PD V +N L+    + G   +A  + AEM    + 
Sbjct: 292 NGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR--NG 349

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           V P  +T  AL+ +   A  ++RA E +  +    ++     YT  I+  S+ G    A 
Sbjct: 350 VSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAY 409

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMG 347
            + ++MT+ G  P  V  +A I   GH    ++E A  ++QE   +G++  ++SYS+++ 
Sbjct: 410 RILNEMTESGFSPSVVTYNAFIH--GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIIS 467

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                    +A ++ + M    + P   T ++LI  LC+  +L +  ++  +M  +GL P
Sbjct: 468 GFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPP 527

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 467
           +  TY+ L+ A   + D+   L L  +    G +P+ V +  +I   ++   +ART    
Sbjct: 528 DEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNK---QARTREAK 584

Query: 468 VLSFNSGRPQIENKWTSLALMVYREAIVA-----------GTIPTVEVVSKVLG-CLQ-L 514
            L F                ++Y E++ +             I    VV+ + G C++ L
Sbjct: 585 RLLFK---------------LIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGL 629

Query: 515 PYNAD-IRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVP 568
            + AD + E +VE      +A+       +I G   G   P+AF+L +E    G VP
Sbjct: 630 MHEADRVFESMVERNHKPGEAVYN----VIIHGHCRGGNLPKAFNLYKEMIHSGFVP 682



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 181/404 (44%), Gaps = 20/404 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R+G + E  ++LE+M  KG    +  Y+      CK     +      ++V N   
Sbjct: 292 NGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVS 351

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P++ T+  L++    +++   A +    ++  GL+ + + YTTLI   ++ G ++  + +
Sbjct: 352 PSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRI 411

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            +EM  +G  P+V TY A I G     ++ +A G    M  K + PD V ++ +I+   +
Sbjct: 412 LNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCR 471

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +DRAF +  EM  +   V PD +T  +L++      ++  A ++ + +    +    
Sbjct: 472 KGELDRAFQMKQEMVEK--GVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 529

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  IN     GD   A  ++D+M  KG +PD V  S LI+      +   A  +L +
Sbjct: 530 FTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFK 589

Query: 330 AKNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPTV 374
              +      ++Y +L+  CSN +                  +A  ++E M     KP  
Sbjct: 590 LIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGE 649

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           +  N +I   C G  LPK   +  +M   G  P+T+T   L+ A
Sbjct: 650 AVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKA 693



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 114/517 (22%), Positives = 210/517 (40%), Gaps = 66/517 (12%)

Query: 64  HARFFNVCKSQKA-IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           H  F + CK     I   F+ +K     T  T    +++ AS       FQ L+      
Sbjct: 84  HPFFDSHCKCLSLHILTRFKLYK-----TAQTLAQELALSASDPSGSSIFQCLKDSYHV- 137

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK-- 180
             +   ++  ++ + +    +D      +   ++G  P V +Y +++D   ++    K  
Sbjct: 138 YNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLS 197

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A   Y  M    V P+   +N LI      G + +      EM  E +   P+ +T   L
Sbjct: 198 AEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEM--ERNGCLPNVVTYNTL 255

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           + A    G++D A  + K +    ++     Y + IN   + G  + A  + ++M  KG 
Sbjct: 256 IDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGF 315

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            PDEV  + L++     G    A  I  E    G+S  +++Y++L+ +   A+N  +A+E
Sbjct: 316 TPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAME 375

Query: 361 LYEHMKSIKLK-----------------------------------PTVSTMNALITALC 385
            ++ M+   L+                                   P+V T NA I   C
Sbjct: 376 FFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHC 435

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             +++ + + V+ +M   GL P+ ++YS ++    RK +++    +  +  E GV P+ V
Sbjct: 436 VLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAV 495

Query: 446 MFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYR 491
            +  +I G+C  RR  +A  L++ +L    G P  E  +T+L            AL ++ 
Sbjct: 496 TYSSLIQGLCEMRRLTEACDLSQEMLDM--GLPPDEFTYTTLINAYCVEGDLNKALHLHD 553

Query: 492 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
           E I  G +P     S ++  L    N   R R  + L
Sbjct: 554 EMIHKGFLPDAVTYSVLINGL----NKQARTREAKRL 586


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 185/395 (46%), Gaps = 19/395 (4%)

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           ++KA + A R  + V +P + TFN ++S          A  V + ++  GL      Y +
Sbjct: 175 AEKAFRSALR--RRV-SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNS 231

Query: 133 LITTCAKSGKVDAMFEV---FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           LI    K G    M+ V     EMV AGI P   T+G LI+G  K    A A   +  M+
Sbjct: 232 LIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMK 291

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            + +    V +N+LI+     G V+    ++ EM  E   + P+ IT G ++K     G 
Sbjct: 292 QQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM--EDLGLSPNEITFGCVLKGFCKKGM 349

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +  A +    + + N++    +YTI I+   + G  E A +V + M KKG+ P+    + 
Sbjct: 350 MADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNC 409

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     +G   +A  +L E K +GI   +++Y+ L+GA       +KA++L + M  + 
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           L+P   T N +I   CD   +    E+ + M+      N +TY++ +     K   ++G 
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI-----KYFCQIGK 524

Query: 430 M-----LLSQAKEDGVIPNLVMFKCII-GMCSRRY 458
           M     LL++  +  ++PN + ++ I  GM  + Y
Sbjct: 525 MDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGY 559



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 170/404 (42%), Gaps = 53/404 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---- 76
           VS  ++++N +I    R G++ +  D+ +D++  GL      Y++     CK   A    
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 77  -----IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
                +KE     +   +PT  TF +L++    + ++  A +V   +++ G+ A    Y 
Sbjct: 247 HVDMLLKE---MVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYN 303

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           +LI+     GKV+   ++  EM + G+ PN  T+G ++ G  K G +A A      M  +
Sbjct: 304 SLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTER 363

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           NV+PD V++  LI    + G ++ A  V   M  +   + P+  T   L+   + +G   
Sbjct: 364 NVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKK--GISPNVTTYNCLITGFSRSGDWR 421

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A  +   + +  I+     Y + I      G+   A  + D+M++ G+ P+ +  + +I
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                 G +++A+EI                                      M+  + +
Sbjct: 482 QGFCDKGNIKSAYEI-----------------------------------RTRMEKCRKR 506

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             V T N  I   C   ++ +  ++L++M    L PN ITY  +
Sbjct: 507 ANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 14/147 (9%)

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           S ++L+     AK    A + +      ++ P + T N +I+ LC   QL K  +V  D+
Sbjct: 158 SVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDI 217

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGL---MLLSQAKEDGVIPNLVMFKCII-GMCS- 455
           K+ GL P+  TY+ L+    +K          MLL +  E G+ P  V F  +I G C  
Sbjct: 218 KAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKN 277

Query: 456 -------RRYE--KARTLNEHVLSFNS 473
                  R +E  K + +   V+++NS
Sbjct: 278 SNTAAAVRVFEEMKQQGIAASVVTYNS 304



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 75/167 (44%), Gaps = 7/167 (4%)

Query: 17  KHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC- 71
           K A     +S  + +YN LI    R G       LL++M+ KG+      Y+     +C 
Sbjct: 392 KEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCC 451

Query: 72  --KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
             + +KA+K      ++   P   T+N ++       + + A+++   +++   +A+   
Sbjct: 452 KGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVT 511

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           Y   I    + GK+D   ++ +EM++  + PN  TY  + +G  + G
Sbjct: 512 YNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 117/489 (23%), Positives = 217/489 (44%), Gaps = 41/489 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L+S  +S    E AF+++  +   G       Y T+I    K GK +   EV
Sbjct: 258 PDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEV 317

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM+ +G+ P+  TY +L+    K G   +    +  MRS++V PD V F+++++   +
Sbjct: 318 FAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTR 377

Query: 210 SGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNI 265
           SG +D+A   F+ + E       + PD++    L++     G +  A  +  +M+ +   
Sbjct: 378 SGNLDKALMYFNSVKEAG-----LIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCA 432

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                  TI    C +    E A  ++++MT++G+ PD   L+ LID     G ++ A E
Sbjct: 433 MDVVTYNTILHGLCKRKMLGE-ADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAME 491

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + ++ K + I + +++Y++L+       +   A E++  M S ++ PT  + + L+ ALC
Sbjct: 492 LFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALC 551

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L +   V  +M S  + P  +  + ++    R  +   G + L +   +G +P+ +
Sbjct: 552 SKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPDCI 611

Query: 446 MFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV 505
            +  +I                      G  + EN   +  L+   E    G +P V   
Sbjct: 612 SYNTLI---------------------YGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTY 650

Query: 506 SKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLE 559
           + +L       Q+     +  +++E  GV+ D   RS   SLI+GF   D    AF   +
Sbjct: 651 NSILHGFCRENQMKEAEAVLRKMIER-GVNPD---RSTYTSLINGFVSQDNLTEAFRFHD 706

Query: 560 EAASFGIVP 568
           E    G  P
Sbjct: 707 EMLQRGFSP 715



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/429 (21%), Positives = 196/429 (45%), Gaps = 10/429 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G++ +    L +++ KG+   D V +    +   SQ  ++EAF     +P+   
Sbjct: 233 NALCKDGKMEKVGTFLSEVQEKGVYP-DIVTYNTLISAYSSQGLMEEAFELMHAMPSKGF 291

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N +++        E A +V   +  +GL  D   Y +L+    K G       
Sbjct: 292 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETEN 351

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F +M +  + P++  + +++    ++G + KA   +  ++   + PD V++  LI    
Sbjct: 352 IFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYC 411

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  A ++  EM  +   +D   +T   ++        +  A +++  + +  +   
Sbjct: 412 RKGMISEAMNLRNEMLQQGCAMDV--VTYNTILHGLCKRKMLGEADKLFNEMTERGLFPD 469

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
               TI I+   + G+ + A  ++  M +K +  D V  + L+D  G  G ++ A EI  
Sbjct: 470 SYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWA 529

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +  ++ I    IS+S L+ A  +  +  +A  +++ M S  +KPTV   N++I   C   
Sbjct: 530 DMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSG 589

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE--VGLMLLSQAKEDGVIPNLVM 446
                   L  M S G  P+ I+Y+ L+    +++++    GL+   + K+ G++P++  
Sbjct: 590 NASDGEIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFT 649

Query: 447 FKCII-GMC 454
           +  I+ G C
Sbjct: 650 YNSILHGFC 658



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 168/375 (44%), Gaps = 59/375 (15%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F    + +LS   M+  +  S + S+    VLR+++ +G+ +  ++  +L++T +  G  
Sbjct: 96  FPNFKHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGV-SRVEIVNSLVSTYSNCGSN 154

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D++F++                  LI    +A ++ +A+ A+ ++RSK        +   
Sbjct: 155 DSVFDL------------------LIRTFVQARKLREAYEAFTLLRSKG-------YTVS 189

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I AC                               AL+ +    G V+ A  +Y+ I + 
Sbjct: 190 IDACN------------------------------ALIGSLVRIGWVELAWRIYQEISRS 219

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            +        I +N   + G  E   +   ++ +KGV PD V  + LI      G +E A
Sbjct: 220 GVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEA 279

Query: 324 FEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           FE++    ++G S G+ +Y++++ G C + K +++A E++  M    L P  +T  +L+ 
Sbjct: 280 FELMHAMPSKGFSPGVYTYNTVINGLCKHGK-YERAKEVFAEMLRSGLSPDSTTYRSLLM 338

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
             C      +T  + SDM+S  + P+ + +S ++    R  +++  LM  +  KE G+IP
Sbjct: 339 EACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 398

Query: 443 NLVMFKCII-GMCSR 456
           + V++  +I G C +
Sbjct: 399 DNVIYTILIQGYCRK 413



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 141/308 (45%), Gaps = 13/308 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           R+G ISE ++L  +M ++G   MD V Y+     +CK +K + EA + F  +      P 
Sbjct: 412 RKGMISEAMNLRNEMLQQGCA-MDVVTYNTILHGLCK-RKMLGEADKLFNEMTERGLFPD 469

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T  +L+       + + A ++ + ++E  +K D   Y TL+    K G +D   E++ 
Sbjct: 470 SYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWA 529

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +MV+  I P   ++  L++     G +++AF  +  M SK++KP  ++ N++I    +SG
Sbjct: 530 DMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSG 589

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
                   L +M +E     PD I+   L+        + +A  + K + +      P+V
Sbjct: 590 NASDGEIFLEKMISE--GFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDV 647

Query: 272 YT---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           +T   I    C +    E A +V   M ++GV PD    ++LI+       +  AF    
Sbjct: 648 FTYNSILHGFCRENQMKE-AEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHD 706

Query: 329 EAKNQGIS 336
           E   +G S
Sbjct: 707 EMLQRGFS 714



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 42/261 (16%)

Query: 250 VDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           V R   V  ++  Y N      V+ + I    Q      A   +  +  KG        +
Sbjct: 135 VSRVEIVNSLVSTYSNCGSNDSVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACN 194

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           ALI      G VE A+ I QE    G+ V + + + ++ A       +K       ++  
Sbjct: 195 ALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEK 254

Query: 369 KLKPTVSTMNALITA-----------------------------------LCDGDQLPKT 393
            + P + T N LI+A                                   LC   +  + 
Sbjct: 255 GVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERA 314

Query: 394 MEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            EV ++M   GL P++ TY S+L+ AC++ D VE    + S  +   V+P+LV F  ++ 
Sbjct: 315 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETE-NIFSDMRSRDVVPDLVCFSSMMS 373

Query: 453 MCSRRYEKARTLNEHVLSFNS 473
           + +R    +  L++ ++ FNS
Sbjct: 374 LFTR----SGNLDKALMYFNS 390


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 189/414 (45%), Gaps = 6/414 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVPN-PT 91
           L R G+I+E  ++L+ M+ +G       Y      +C ++K    KE F   K   + P 
Sbjct: 268 LGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPD 327

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+  L+   + ++D +   Q    +++ G   D   +T L+    K+G     F+   
Sbjct: 328 RVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLD 387

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M + GI PN+HTY  LI G  +  ++  A   +G M S  VKP    +   I   G+SG
Sbjct: 388 VMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSG 447

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
               A +   +M  +   + P+ +   A + + A AG+   A++++  +    +      
Sbjct: 448 DSVSALETFEKMKTK--GIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVT 505

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + + C S+ G+ + A  +  +M + G  PD + +++LI+    A +V+ A+++    K
Sbjct: 506 YNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMK 565

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
              +   +++Y++L+         Q+A+EL+E M      P   T N L   LC  D++ 
Sbjct: 566 EMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVT 625

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             +++L  M  +G  P+  TY+ ++    +   V+  +    Q K+  V P+ V
Sbjct: 626 LALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK-LVYPDFV 678



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 185/448 (41%), Gaps = 79/448 (17%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           ++ I E FR       P+L T++ LM      +D +    +L+ ++  GLK +   +T  
Sbjct: 212 RRMILEGFR-------PSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTIC 264

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    ++GK++  +E+   M + G  P+V TY  LID    A ++  A   +  M++   
Sbjct: 265 IRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH 324

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ---- 249
           KPDRV +  L+     +  +D      +EM  + H   PD +T   L+ A   AG     
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHV--PDVVTFTILVDALCKAGNFGEA 382

Query: 250 -----VDRAREVYKMIHKYN--------------------------IKGTPEVYTIAINC 278
                V R + +   +H YN                          +K T   Y + I+ 
Sbjct: 383 FDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDY 442

Query: 279 CSQTGDWEFACSVYDDMTKKGV-----------------------------------IPD 303
             ++GD   A   ++ M  KG+                                   +PD
Sbjct: 443 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 502

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V  + ++      G+++ A ++L E    G    +I  +SL+     A    +A +++ 
Sbjct: 503 SVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFM 562

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            MK +KLKPTV T N L+  L    ++ + +E+   M   G  PNTIT++ L     + D
Sbjct: 563 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKND 622

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +V + L +L +  + G +P++  +  II
Sbjct: 623 EVTLALKMLFKMMDMGCVPDVFTYNTII 650



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 168/387 (43%), Gaps = 10/387 (2%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R  K   N  L+ F  L SV    K +  A   LR ++E G   +   Y  LI    KS 
Sbjct: 147 RIIKRDTNTYLTIFKSL-SVKGGLKQAPYA---LRKMREFGFVLNAYSYNGLIHLLLKSR 202

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
                 EV+  M+  G  P++ TY +L+ G  K   +    G    M +  +KP+   F 
Sbjct: 203 FCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFT 262

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
             I   G++G ++ A+++L  M+ E     PD +T   L+ A   A ++D A+EV++ + 
Sbjct: 263 ICIRVLGRAGKINEAYEILKRMDDE--GCGPDVVTYTVLIDALCTARKLDCAKEVFEKMK 320

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
               K     Y   ++  S   D +     + +M K G +PD V  + L+D    AG   
Sbjct: 321 TGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFG 380

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            AF+ L   ++QGI   + +Y++L+           ALEL+ +M+S+ +KPT  T    I
Sbjct: 381 EAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFI 440

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
                       +E    MK+ G+ PN +  +  L +  +         +    K+ G++
Sbjct: 441 DYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLV 500

Query: 442 PNLVMFKCIIGMCSRRYEKARTLNEHV 468
           P+ V +     M  + Y K   ++E +
Sbjct: 501 PDSVTYN----MMMKCYSKVGEIDEAI 523



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 154/302 (50%), Gaps = 2/302 (0%)

Query: 116  RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
            +  ++ G++     Y  LI    ++  ++   +VF ++ + G  P+V TY  L+D   K+
Sbjct: 774  KFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKS 833

Query: 176  GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            G++ + F  Y  M +   + + +  N +I+   ++G VD A D+  ++ ++     P   
Sbjct: 834  GKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSD-RDFSPTAC 892

Query: 236  TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
            T G L+   + +G++  A+++++ +  Y  +    +Y I IN   + G+ + AC+++  M
Sbjct: 893  TYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRM 952

Query: 296  TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             K+GV PD    S L+D     G+V+      +E K  G++  ++ Y+ ++     +   
Sbjct: 953  VKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRL 1012

Query: 356  QKALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++AL L+  MK+ + + P + T N+LI  L     + +  ++ ++++  GL PN  T++ 
Sbjct: 1013 EEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNA 1072

Query: 415  LL 416
            L+
Sbjct: 1073 LI 1074



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 149/328 (45%), Gaps = 4/328 (1%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P L T+N+L+     +   E A  V   V+  G   D   Y  L+    KSGK+D +FE+
Sbjct: 783  PKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFEL 842

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALITACG 208
            + EM     E N  T+  +I G  KAG V  A   Y  +M  ++  P    +  LI    
Sbjct: 843  YKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS 902

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +SG +  A  +   M    +   P+      L+     AG+ D A  ++K + K  ++  
Sbjct: 903  KSGRLYEAKQLFEGMLD--YGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPD 960

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             + Y++ ++C    G  +     + ++ + G+ PD V  + +I+  G + ++E A  +  
Sbjct: 961  LKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFN 1020

Query: 329  EAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E K ++GI+  + +Y+SL+     A   ++A ++Y  ++   L+P V T NALI      
Sbjct: 1021 EMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLS 1080

Query: 388  DQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             +      V   M + G  PNT TY  L
Sbjct: 1081 GKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 159/377 (42%), Gaps = 67/377 (17%)

Query: 145  AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
             +FE F +  + G++P + TY  LI G  +A  +  A   +  ++S    PD   +N L+
Sbjct: 770  TLFEKFTK--DLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLL 827

Query: 205  TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKY 263
             A G+SG +D  F++  EM+   H  + + IT   ++     AG VD A ++Y  ++   
Sbjct: 828  DAYGKSGKIDELFELYKEMST--HECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDR 885

Query: 264  NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            +   T   Y   I+  S++G    A  +++ M   G  P+    + LI+  G AG+ +AA
Sbjct: 886  DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAA 945

Query: 324  FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
              + +    +G+                                   +P + T + L+  
Sbjct: 946  CALFKRMVKEGV-----------------------------------RPDLKTYSVLVDC 970

Query: 384  LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIP 442
            LC   ++ + +    ++K  GL P+ + Y++++    +   +E  L+L ++ K   G+ P
Sbjct: 971  LCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITP 1030

Query: 443  NLVMFKCII---GMCSRRYEKARTLNE--------HVLSFN--------SGRPQIENKWT 483
            +L  +  +I   G+     E  +  NE        +V +FN        SG+P+      
Sbjct: 1031 DLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPE------ 1084

Query: 484  SLALMVYREAIVAGTIP 500
              A  VY+  +  G  P
Sbjct: 1085 -HAYAVYQTMVTGGFSP 1100



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 5/217 (2%)

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            +PT  T+  L+   + S     A Q+   + + G + +C +Y  LI    K+G+ DA   
Sbjct: 888  SPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACA 947

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            +F  MV  G+ P++ TY  L+D     G+V +    +  ++   + PD V +N +I   G
Sbjct: 948  LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLG 1007

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +S  ++ A  +  EM      + PD  T  +L+     AG V+ A ++Y  I +  ++  
Sbjct: 1008 KSHRLEEALVLFNEMKTS-RGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLE-- 1064

Query: 269  PEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPD 303
            P V+T    I   S +G  E A +VY  M   G  P+
Sbjct: 1065 PNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1101



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 113/502 (22%), Positives = 205/502 (40%), Gaps = 32/502 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L + GR  E   +   ++  GL+  D V +            I EA +   +++ N   P
Sbjct: 478 LAKAGRDREAKQIFYGLKDIGLVP-DSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEP 536

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            +   N L++    +   + A+++   ++E  LK     Y TL+    K+GK+    E+F
Sbjct: 537 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 596

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             MV  G  PN  T+  L D   K  +V  A      M      PD   +N +I    ++
Sbjct: 597 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKN 656

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK--YNIKGT 268
           G V  A     +M   V+   PD +T+  L+     A  ++ A   YK+I    YN    
Sbjct: 657 GQVKEAMCFFHQMKKLVY---PDFVTLCTLLPGVVKASLIEDA---YKIITNFLYNCADQ 710

Query: 269 PE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFE 325
           P    +   I         + A S  + +   G+  D +  L  +I ++     V  A  
Sbjct: 711 PANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGART 770

Query: 326 ILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           + ++  K+ G+   + +Y+ L+G    A   + A +++  +KS    P V+T N L+ A 
Sbjct: 771 LFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAY 830

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPN 443
               ++ +  E+  +M +     NTIT++I++    +  +V+  L L      D    P 
Sbjct: 831 GKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPT 890

Query: 444 LVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ--IENKWTS---------LALMVY 490
              +  +I   S+  R  +A+ L E +L +   RP   I N   +          A  ++
Sbjct: 891 ACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGC-RPNCAIYNILINGFGKAGEADAACALF 949

Query: 491 REAIVAGTIPTVEVVSKVLGCL 512
           +  +  G  P ++  S ++ CL
Sbjct: 950 KRMVKEGVRPDLKTYSVLVDCL 971



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 132/340 (38%), Gaps = 37/340 (10%)

Query: 141 GKVDAMFEVF-----------------------------------HEMVNAGIEPNVHTY 165
           GK++ M  VF                                    +M   G   N ++Y
Sbjct: 132 GKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSY 191

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
             LI    K+    +A   Y  M  +  +P    +++L+   G+   +D    +L EM  
Sbjct: 192 NGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM-- 249

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
           E   + P+  T    ++    AG+++ A E+ K +           YT+ I+        
Sbjct: 250 ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKL 309

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A  V++ M      PD V    L+D       +++  +   E +  G    +++++ L
Sbjct: 310 DCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTIL 369

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           + A   A N+ +A +  + M+   + P + T N LI  L    +L   +E+  +M+SLG+
Sbjct: 370 VDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGV 429

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
            P   TY + +    +  D    L    + K  G+ PN+V
Sbjct: 430 KPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIV 469



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 95/210 (45%), Gaps = 11/210 (5%)

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEA 322
           N+  T E     +      G  E    V+D M K+ +  D   +L+     +   G  +A
Sbjct: 113 NLVHTTETCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQA 172

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
            +  L++ +  G  +   SY+ L+     ++   +A+E+Y  M     +P++ T ++L+ 
Sbjct: 173 PYA-LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMV 231

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            L     +   M +L +M++LGL PN  T++I +    R   +     +L +  ++G  P
Sbjct: 232 GLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGP 291

Query: 443 NLVMFKCII-GMCSRR--------YEKART 463
           ++V +  +I  +C+ R        +EK +T
Sbjct: 292 DVVTYTVLIDALCTARKLDCAKEVFEKMKT 321



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 10/181 (5%)

Query: 32   YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
            YN LI    + G       L + M ++G+    K Y      +C   + + E   +FK +
Sbjct: 929  YNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR-VDEGLHYFKEL 987

Query: 88   P----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGK 142
                 NP +  +N++++    S   E A  +   ++ + G+  D   Y +LI     +G 
Sbjct: 988  KESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGM 1047

Query: 143  VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            V+   ++++E+  AG+EPNV T+ ALI G + +G+   A+  Y  M +    P+   +  
Sbjct: 1048 VEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQ 1107

Query: 203  L 203
            L
Sbjct: 1108 L 1108



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 92/233 (39%), Gaps = 1/233 (0%)

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           G M  K+ KPD      +          D +F     +   ++ V     T   +++A  
Sbjct: 71  GSMIRKSSKPDLSSSEEVTRGLKSFPDTDSSFSYFKSVAGNLNLVHTTE-TCNYMLEALR 129

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
             G+++    V+ ++ K  IK     Y       S  G  + A      M + G + +  
Sbjct: 130 VDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAY 189

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + LI     +     A E+ +    +G    + +YSSLM      ++    + L + M
Sbjct: 190 SYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM 249

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           +++ LKP V T    I  L    ++ +  E+L  M   G  P+ +TY++L+ A
Sbjct: 250 ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDA 302


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 129/524 (24%), Positives = 219/524 (41%), Gaps = 71/524 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T N L+     +     A  +L  +   G+  D   +TTL+    + G ++A   V
Sbjct: 195 PDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRV 254

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M+ AG  P   T   LI+G  K G+V  A G      +   +PD+V +N  +    Q
Sbjct: 255 KAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQ 314

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR--------------- 254
           +G V  A  V+  M  E H  DPD  T   ++   +  G++D A+               
Sbjct: 315 NGHVSHALKVMDLMLQEGH--DPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDT 372

Query: 255 -----------------EVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDD 294
                            E   +  +  +KG +P+VYT  I IN   + GD      ++++
Sbjct: 373 TTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEE 432

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G  PDEV  + LID     GK+  A ++L E ++ G     ++Y++++ A      
Sbjct: 433 MKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMR 492

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++A E+++ M +  +  +  T N LI  LC   ++    E++  M   GL PN ITY+ 
Sbjct: 493 IEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNS 552

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 473
           +L    ++ +++    +L     +G   ++V +  +I G+C                  +
Sbjct: 553 ILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCK-----------------A 595

Query: 474 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE-----RLVENL 528
           GR Q+       AL + R   + G  PT +  + V+  L    N  +R+     R +  +
Sbjct: 596 GRTQV-------ALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNN--LRDALNLFREMTEV 646

Query: 529 GVSADALK-RSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571
           G   DAL  +    SL  G G     AF  L E  + G +P  S
Sbjct: 647 GEPPDALTYKIVFRSLCRGGGPIK-EAFDFLVEMVNKGFMPEFS 689



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/419 (19%), Positives = 183/419 (43%), Gaps = 8/419 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTL 92
           + GR+ + +  ++     G  + D+V +  F +       +  A +   L+     +P +
Sbjct: 279 KMGRVEDALGYIQQEIADGF-EPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDV 337

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+N +++  + + + + A  ++  + + G   D   + TLI   +   +++   ++  E
Sbjct: 338 FTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARE 397

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           +   G+ P+V+T+  LI+   K G        +  M+S    PD V +N LI      G 
Sbjct: 398 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGK 457

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +  A D+L EM +   P     +T   ++ A     +++ A EV+  +    I  +   +
Sbjct: 458 LGNALDLLNEMESNGCP--RSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTF 515

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+   +    + A  + + M K+G+ P+ +  ++++      G ++ A +IL+    
Sbjct: 516 NTLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTA 575

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G  + +++Y +L+     A   Q AL+L   M+   ++PT    N +I +L   + L  
Sbjct: 576 NGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRD 635

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            + +  +M  +G  P+ +TY I+  + C     ++     L +    G +P    F+ +
Sbjct: 636 ALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRML 694



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 153/368 (41%), Gaps = 14/368 (3%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMF 147
           +S  + L++      D E A   LR++  A  + D      +Y  ++     +G  D M 
Sbjct: 53  ISDQDRLLAALREQSDPEAA---LRMLNSALAREDFAPSSAVYEEIVQKLGTAGAFDLME 109

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN---VKPDRVVFNALI 204
            +  EM   G +       + ++  A+  +   A          +   V+ D VVFN L+
Sbjct: 110 GLVREMRREGHQVRAVVVRSFVESYARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLL 169

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               +   +     V  EM      + PD +T+  L+KA   A QV  A  + + +  + 
Sbjct: 170 NVLVEGSKLKLLESVYNEMTG--RGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHG 227

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +      +T  +    + G  E A  V   M + G  P  V ++ LI+     G+VE A 
Sbjct: 228 VAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDAL 287

Query: 325 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             +Q+    G     ++Y++ + G C N  +   AL++ + M      P V T N +I  
Sbjct: 288 GYIQQEIADGFEPDQVTYNTFVHGLCQNG-HVSHALKVMDLMLQEGHDPDVFTYNTVINC 346

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L    +L +   +++ M   G  P+T T++ L+VA   ++ +E  L L  +    G+ P+
Sbjct: 347 LSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPD 406

Query: 444 LVMFKCII 451
           +  F  +I
Sbjct: 407 VYTFNILI 414



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 120/272 (44%), Gaps = 5/272 (1%)

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           ++  P   V+  ++   G +GA D    ++ EM  E H V    + + + +++ A   + 
Sbjct: 83  EDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRA--VVVRSFVESYARLRRF 140

Query: 251 DRARE-VYKMIHK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           D A + V   +    + ++    V+   +N   +    +   SVY++MT +G+ PD V L
Sbjct: 141 DDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTL 200

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + LI     A +V  A  +L+E  + G++    ++++LM       + + AL +   M  
Sbjct: 201 NTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMME 260

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
               PT  T+N LI   C   ++   +  +    + G  P+ +TY+  +    +   V  
Sbjct: 261 AGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSH 320

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
            L ++    ++G  P++  +  +I   S+  E
Sbjct: 321 ALKVMDLMLQEGHDPDVFTYNTVINCLSKNGE 352



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 14/157 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIK--EA 80
           +YN ++    +QG I +  D+LE M   G  ++D V +    N +CK   +Q A+K    
Sbjct: 549 TYNSILTHYCKQGNIKKAADILETMTANGF-EIDVVTYGTLINGLCKAGRTQVALKLLRG 607

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAK 139
            R   + P P    +N ++       +   A  + R + E G   D   Y  +  + C  
Sbjct: 608 MRIKGIRPTP--KAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRG 665

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
            G +   F+   EMVN G  P   ++  L +G    G
Sbjct: 666 GGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 702


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 176/401 (43%), Gaps = 38/401 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN LM     +     A  +L  +  +G+  D   +TTL+    + G + A   V
Sbjct: 183 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRV 242

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M+  G  P   T   LI+G  K G+V  A G      +   +PD++ +N  +    Q
Sbjct: 243 KARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQ 302

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR--------------- 254
           +G V  A  V+  M  E H  DPD  T   ++      GQ++ A+               
Sbjct: 303 NGHVGHALKVMDVMVQEGH--DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDI 360

Query: 255 -----------------EVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDD 294
                            E   +  +  +KG +P+VYT  I IN   + GD + A  ++++
Sbjct: 361 TTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEE 420

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G  PDEV  + LID     GK+  A ++L+E ++ G     ++Y++++        
Sbjct: 421 MKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMR 480

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++A E+++ M    +     T N LI  LC   ++    +++S M S GL PN ITY+ 
Sbjct: 481 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNS 540

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +L    ++ D++    +L     +G   ++V +  +I G+C
Sbjct: 541 ILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLC 581



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 166/384 (43%), Gaps = 35/384 (9%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G++AD  +Y  L+    +  K+  +  V+ EM   GI+P+V T+  L+    +A QV  A
Sbjct: 145 GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTA 204

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF------------------------ 217
                 M S  V PD   F  L+    + G++  A                         
Sbjct: 205 VLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLING 264

Query: 218 --------DVLAEMNAEV-HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                   D L  +  E+ +  +PD IT    +      G V  A +V  ++ +      
Sbjct: 265 YCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPD 324

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I +NC  + G  E A  + + M ++G +PD    + LI       ++E A ++ +
Sbjct: 325 VFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLAR 384

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +   +G+S  + +++ L+ A     + Q AL L+E MKS    P   T N LI  LC   
Sbjct: 385 QVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLG 444

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L K +++L +M+S G   +T+TY+ ++    +K  +E    +  Q    G+  N + F 
Sbjct: 445 KLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 504

Query: 449 CII-GMC-SRRYEKARTLNEHVLS 470
            +I G+C  +R + A  L   ++S
Sbjct: 505 TLIDGLCKDKRIDDANQLISQMIS 528



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 137/328 (41%), Gaps = 5/328 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P ++TFN L+    S    E A  + R V   GL  D   +  LI    K G       +
Sbjct: 358 PDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRL 417

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM ++G  P+  TY  LID     G++ KA      M S       V +N +I    +
Sbjct: 418 FEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCK 477

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              ++ A +V  +M  ++  +  + IT   L+       ++D A ++   +    ++   
Sbjct: 478 KMRIEEAEEVFDQM--DLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNN 535

Query: 270 EVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             Y +I  + C Q GD + A  +   MT  G   D V    LI+    AG+ + A ++L+
Sbjct: 536 ITYNSILTHYCKQ-GDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLR 594

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DG 387
             + +G+     +Y+ ++ +     N + A+ L+  M  +   P   T   +   LC  G
Sbjct: 595 GMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGG 654

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             + +  + L +M   G  P   ++ +L
Sbjct: 655 GSIREAFDFLLEMVDKGFIPEFSSFRML 682



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/457 (19%), Positives = 189/457 (41%), Gaps = 37/457 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPT 91
           L R  ++   + +LE+M   G+   +  +      F      + A++   R  ++  +PT
Sbjct: 195 LCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPT 254

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T N+L++        E A   ++     G + D   Y T +    ++G V    +V  
Sbjct: 255 KVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMD 314

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            MV  G +P+V TY  +++   K GQ+ +A G    M  +   PD   FN LI A     
Sbjct: 315 VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGN 374

Query: 212 AVDRAFDV-----LAEMNAEVHPVD----------------------------PDHITIG 238
            ++ A D+     L  ++ +V+  +                            PD +T  
Sbjct: 375 RLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYN 434

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+    + G++ +A ++ K +       +   Y   I+   +    E A  V+D M  +
Sbjct: 435 TLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQ 494

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+  + +  + LID      +++ A +++ +  ++G+    I+Y+S++       + +KA
Sbjct: 495 GISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKA 554

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            ++ + M +   +  V T   LI  LC   +    +++L  M+  G+      Y+ ++ +
Sbjct: 555 ADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQS 614

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
             R+++    + L  +  E G  P+   +K +  G+C
Sbjct: 615 LFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLC 651



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 123/327 (37%), Gaps = 63/327 (19%)

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           ++ D VV+N L+    +   +     V +EM      + PD +T   LMKA   A QV  
Sbjct: 146 IQADTVVYNHLLNVLVEGSKMKLLETVYSEMGE--RGIKPDVVTFNTLMKALCRAHQV-- 201

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
                                              A  + ++M+  GV PDE   + L+ 
Sbjct: 202 ---------------------------------RTAVLMLEEMSSSGVAPDETTFTTLMQ 228

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G ++AA  +       G S   ++ + L+         + AL   +   +   +P
Sbjct: 229 GFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEP 288

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T N  +  LC    +   ++V+  M   G  P+  TY+I++    +   +E    +L
Sbjct: 289 DQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 348

Query: 433 SQAKEDGVIPNLVMFKC-IIGMCS-RRYEKA---------RTLNEHVLSFN--------S 473
           +Q  E G +P++  F   I+ +CS  R E+A         + L+  V +FN         
Sbjct: 349 NQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKV 408

Query: 474 GRPQIENKWTSLALMVYREAIVAGTIP 500
           G PQ       LAL ++ E   +G  P
Sbjct: 409 GDPQ-------LALRLFEEMKSSGCTP 428


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/442 (23%), Positives = 209/442 (47%), Gaps = 9/442 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L + G+++E ++++E+M  KG+      Y      +C++ K  +    F K++    +  
Sbjct: 20  LCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSAN 79

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
              +N L++     ++ E A+++L  +   G + D   Y T+++   + GKV    + F 
Sbjct: 80  TVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFD 139

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR--SKNVKPDRVVFNALITACGQ 209
            M + G  P+V  Y  L+D   K G+VA+A+G +  M    + V PD + +N LI    +
Sbjct: 140 SMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCR 199

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
               D A  +  ++ A+ +   PD +T  +++   A    +D A E++K +         
Sbjct: 200 VEKTDEAMKLFKDVIAKGYM--PDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNG 257

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+I ++   + G+      +Y++MT+K   PD +  +A+ID    A KV+ A ++L+E
Sbjct: 258 ATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEE 317

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G    +++Y+ L+          KA EL+  M      P + + + ++  LC  ++
Sbjct: 318 MSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNK 377

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +     +   M    L P+ +T++IL+    +   ++    LL    E  V+P+ V    
Sbjct: 378 VHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTT 437

Query: 450 II-GMC-SRRYEKARTLNEHVL 469
           ++ G+C  +R ++A  L ++++
Sbjct: 438 LMHGLCRDKRTDEAVRLFQYMV 459



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 171/425 (40%), Gaps = 46/425 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------ 88
           L R G++SE     + M  +G    D V +    +    +  + EA+  FK +       
Sbjct: 125 LCRMGKVSEAKQFFDSMPSRGY-SPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKV 183

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+N L+      + ++ A ++ + V   G   D   Y +++   A+   +D   E
Sbjct: 184 APDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEE 243

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F +MV++G  PN  TY  ++ G  + G +A+    Y  M  K   PD ++ NA+I    
Sbjct: 244 MFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLC 303

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++  VD A  VL EM +++  V PD +T   L+        VD+A E++           
Sbjct: 304 KAKKVDDAHKVLEEM-SKIGAV-PDVVTYNILLDGLCKTNLVDKAHELFST--------- 352

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
                                     M   G  PD V  S +++      KV  A  +  
Sbjct: 353 --------------------------MVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFD 386

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               + +   +++++ LM     A    +A +L + M    + P   T   L+  LC   
Sbjct: 387 RMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDK 446

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL-SQAKEDGVI-PNLVM 446
           +  + + +   M   G   + + ++I+L    R+  +   L+   S  K DG   P++V 
Sbjct: 447 RTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVT 506

Query: 447 FKCII 451
           +  ++
Sbjct: 507 YTTLV 511



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 140/334 (41%), Gaps = 40/334 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           R G ++ C++L E+M  K                           RF     +P +   N
Sbjct: 269 RVGNMARCLELYEEMTEK---------------------------RF-----SPDVLLCN 296

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
            ++ +   +K  + A +VL  + + G   D   Y  L+    K+  VD   E+F  MV+ 
Sbjct: 297 AVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDN 356

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G  P++ +Y  +++G  K  +V  A   +  M  + + PD V FN L+    ++G +D A
Sbjct: 357 GCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEA 416

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGT-PEVYTI 274
            D+L  M+   H V PD +T   LM       + D A  +++ M+ K  +    P    +
Sbjct: 417 KDLLDVMSE--HNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVL 474

Query: 275 AINCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           A  C  + G    A   +  M K      PD V  + L++    AG+V+ A +  Q+   
Sbjct: 475 AGLC--REGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTG 532

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            G +   ++Y++LM          +A  L + MK
Sbjct: 533 SGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMK 566


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 173/362 (47%), Gaps = 3/362 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T N+++     S + + A  V+  +++  +  D   +  LI    ++G VDA   +   M
Sbjct: 159 TLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            N G++P + T+ +++ G  K  +  KA   +  M   +V PD   FN LI    + G V
Sbjct: 219 ANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + A     EM  +   V PD ++   L+   +  G++D A    + +    +     +YT
Sbjct: 279 EEAMKFYKEM--QQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYT 336

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           + I    + G    A  V D+M   G +PD V  + L++      ++  A E+L E K +
Sbjct: 337 MVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKER 396

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G++  + ++++L+       N++KAL+L++ +   +L+P V   N+LI  +C    L K 
Sbjct: 397 GVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKA 456

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
            E+  DM +  + PN +TYSIL+ +   K  VE     L +    G +PN++ +  II G
Sbjct: 457 NELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKG 516

Query: 453 MC 454
            C
Sbjct: 517 YC 518



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 171/370 (46%), Gaps = 3/370 (0%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P    F++L+     S+    AF+  RL+ +  +         L+   +++G      
Sbjct: 83  PTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAE 142

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E +  ++++  E N +T   ++    K+ +  KA      M  + V PD V  N LI A 
Sbjct: 143 EAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDAR 202

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G VD A  ++  M  +   + P  +T  +++K      + D+A+EV++ + + ++  
Sbjct: 203 FRAGDVDAAIALVDSMANK--GLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAP 260

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               + I I    + G+ E A   Y +M ++GV PD V  S LI      GK++ A   L
Sbjct: 261 DVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYL 320

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E K  G+    + Y+ ++G    A +  +AL + + M  +   P V T N L+  LC  
Sbjct: 321 REMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQ 380

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +L    E+L++MK  G+ P+  T++ L+    R  + E  L L        + P++V +
Sbjct: 381 HRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAY 440

Query: 448 KCII-GMCSR 456
             +I GMC +
Sbjct: 441 NSLIDGMCRK 450



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 192/442 (43%), Gaps = 20/442 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFF-KLVPNPTL 92
            R G +   I L++ M  KGL      +++    +CK ++    KE FR   +    P +
Sbjct: 203 FRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDV 262

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            +FN+L+       + E A +  + +Q+ G+  D   ++ LI   +  GK+D       E
Sbjct: 263 RSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLRE 322

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSG 211
           M   G+ P+   Y  +I G  +AG +++A      M      PD V +N L+   C Q  
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHR 382

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +D A ++L EM      V PD  T   L+      G  ++A +++  +    ++     
Sbjct: 383 LLD-AEELLNEMKER--GVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVA 439

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+   + GD   A  ++DDM  + + P+ V  S LID     G+VE AF  L E  
Sbjct: 440 YNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMV 499

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           ++G    I++Y+S++     + N +K  +  + M    + P + T N LI      + + 
Sbjct: 500 SKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMH 559

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               V + M+   + P+ +TY++++     + ++E    +  +    G+ P+        
Sbjct: 560 GAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPD-------- 611

Query: 452 GMCSRRYEKARTLNEHVLSFNS 473
                RY     +N HV + NS
Sbjct: 612 -----RYTYMSLINGHVTAGNS 628



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 133/303 (43%), Gaps = 5/303 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           R G +SE + + ++M   G L     Y+     +CK  + +       ++      P L 
Sbjct: 344 RAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLC 403

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           TF  L+       + E A Q+   +    L+ D   Y +LI    + G +    E++ +M
Sbjct: 404 TFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDM 463

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               I PN  TY  LID   + GQV +AFG    M SK   P+ + +N++I    +SG V
Sbjct: 464 HAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNV 523

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            +    L +M  +   + PD IT   L+        +  A  V+ ++ K  ++     Y 
Sbjct: 524 KKGQQFLQKMMQD--NILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYN 581

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           + IN  S+ G+ E A  V+  M   G+ PD     +LI+    AG  + AF++  E  ++
Sbjct: 582 MIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHR 641

Query: 334 GIS 336
           G +
Sbjct: 642 GFA 644



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 122/277 (44%), Gaps = 5/277 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
           N L +Q R+ +  +LL +M+ +G+      +       C+    +KA++           
Sbjct: 375 NGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLR 434

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +N L+       D   A ++   +    +  +   Y+ LI +  + G+V+  F  
Sbjct: 435 PDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGF 494

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EMV+ G  PN+ TY ++I G  ++G V K       M   N+ PD + FN LI    +
Sbjct: 495 LDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIK 554

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +  AF+V   M  E+  V PD +T   ++   +  G ++ A  V+K +    I+   
Sbjct: 555 EENMHGAFNVFNIMEKEM--VQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDR 612

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
             Y   IN     G+ + A  ++D+M  +G  PD+ F
Sbjct: 613 YTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPDDKF 649



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 37/263 (14%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P   VF+ LI    QS     AF+    +     PV        AL+ A + AG    A 
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVP--ASASNALLAALSRAGWPHLAE 142

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E Y+++   + +       I ++   ++ +++ A +V  +M K+ V PD V  + LID  
Sbjct: 143 EAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDAR 202

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             AG V+AA                                   + L + M +  LKP +
Sbjct: 203 FRAGDVDAA-----------------------------------IALVDSMANKGLKPGI 227

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N+++  LC   +  K  EV   M    + P+  +++IL+    R  +VE  +    +
Sbjct: 228 VTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKE 287

Query: 435 AKEDGVIPNLVMFKCIIGMCSRR 457
            ++ GV P++V F C+IG+ S R
Sbjct: 288 MQQRGVTPDVVSFSCLIGLFSTR 310



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 94/201 (46%), Gaps = 9/201 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+G +++  +L +DM  + +      Y     + C+  + ++EAF F   
Sbjct: 439 AYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQ-VEEAFGFLDE 497

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P + T+N ++     S + +   Q L+ + +  +  D   + TLI    K   
Sbjct: 498 MVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEEN 557

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +   F VF+ M    ++P+  TY  +I+G ++ G + +A   +  M +  ++PDR  + +
Sbjct: 558 MHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMS 617

Query: 203 LITACGQSGAVDRAFDVLAEM 223
           LI     +G    AF +  EM
Sbjct: 618 LINGHVTAGNSKEAFQLHDEM 638


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 173/342 (50%), Gaps = 2/342 (0%)

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
            A Q+L+ V    ++ +  +Y  +I    K+  V+  F+++ +MV   I P+V TY ALI
Sbjct: 184 AALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALI 243

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
            G +   ++  A   +  M+ +N+ P+   FN L+    + G V+ A  VLA M  +   
Sbjct: 244 SGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKD--D 301

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           + PD +T  +LM    +  +V++A++++  +    +    ++YT  +N   +    + A 
Sbjct: 302 IKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAI 361

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
           +++++M  + +IP+ V  S+LID     G++  A +++ E  ++G    I++YSS++ A 
Sbjct: 362 NLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDAL 421

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
               +  KA+ L  ++K   ++P + T   LI  LC   +L     V  D+   G   + 
Sbjct: 422 CKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDV 481

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             Y++++     K   +  L LLS+ +++G IPN   ++ +I
Sbjct: 482 YAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVI 523



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 185/380 (48%), Gaps = 8/380 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           TFN+L++  +    +  +F +   + + G       + TLI      G +        ++
Sbjct: 98  TFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKV 157

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           V  G   +  +YG LI+G  K G++  A      +  K V+P+ V++N +I    ++  V
Sbjct: 158 VAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLV 217

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + AFD+ ++M A+   + PD  T  AL+   +   +++ A +++  + K NI   P VYT
Sbjct: 218 NDAFDLYSQMVAK--RICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENI--NPNVYT 273

Query: 274 --IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
             I ++   + G    A  V   M K  + PD V  ++L+D      KV  A +I     
Sbjct: 274 FNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMA 333

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           + G+   +  Y++++      K   +A+ L+E M+  K+ P V T ++LI  LC   ++ 
Sbjct: 334 SGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIF 393

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             ++++ +M   G  PN +TYS +L A  +   V+  + LL+  K+ G+ P++  +  +I
Sbjct: 394 YALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILI 453

Query: 452 -GMC-SRRYEKARTLNEHVL 469
            G+C S R E A+ + E +L
Sbjct: 454 KGLCQSGRLEDAQNVFEDLL 473



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 130/291 (44%), Gaps = 13/291 (4%)

Query: 22  AHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + +YN LI       +++  IDL   M+++ +      ++      CK  K  
Sbjct: 229 AKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVN 288

Query: 78  KEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
                   ++ +   P + T+N LM    S      A  +   +   G+ A+ ++YTT++
Sbjct: 289 DAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMV 348

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K   VD    +F EM    I PNV TY +LIDG  K G++  A      M  +   
Sbjct: 349 NGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQP 408

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ V +++++ A  ++  VD+A  +L   N +   + PD  T   L+K    +G+++ A+
Sbjct: 409 PNIVTYSSILDALCKNHHVDKAIALLT--NLKDQGIRPDMYTYTILIKGLCQSGRLEDAQ 466

Query: 255 EVYK--MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
            V++  ++  YN+      YT+ I      G ++ A ++   M   G IP+
Sbjct: 467 NVFEDLLVKGYNLD--VYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPN 515



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 125/280 (44%), Gaps = 4/280 (1%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           ++  KN  P    FN ++++  ++     A  +  +M  E++ ++ D  T   L+   + 
Sbjct: 51  LLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQM--ELNGIESDFFTFNILINCFSQ 108

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G    +  ++  I K     T   +   I      G    A   +D +  +G   D+V 
Sbjct: 109 LGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVS 168

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
              LI+     G++ AA ++L+    + +    + Y+ ++     AK    A +LY  M 
Sbjct: 169 YGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMV 228

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           + ++ P V T NALI+      +L   +++ + MK   + PN  T++IL+    ++  V 
Sbjct: 229 AKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVN 288

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 464
              ++L+   +D + P++V +  ++ G CS  +  KA+ +
Sbjct: 289 DAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDI 328


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 184/406 (45%), Gaps = 39/406 (9%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--M 146
           N T  T+N L+S CA + D E A  ++  +++ G  +D   Y+ +I +  +  +VD+  +
Sbjct: 195 NLTPLTYNALISACARNNDLEKALNLITRMRQDGYPSDFVNYSLIIRSLMRKNRVDSAIL 254

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI------------------- 187
            +++ E+    +E +V     +I G AKAG ++KA    G+                   
Sbjct: 255 QKLYREIECDKLELDVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKTATLVAVIWA 314

Query: 188 ----------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
                           MR   +KP    +NAL+    ++G +  A  V++EM  E   V 
Sbjct: 315 LGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEM--ERSGVS 372

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P+  T   L+ A  NAG+ + AR V K +   N++    V++  ++     G+W+ +  V
Sbjct: 373 PNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQV 432

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
             +M   GV PD VF + +ID  G    ++ A        ++GI    +++++L+     
Sbjct: 433 LREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCR 492

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A    +A EL+E M      P  +T N +I +  D ++      +L+ M+S GL PN++T
Sbjct: 493 AGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVT 552

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           Y+ L+    +       +  L   K  G+ P+  M+  +I   ++R
Sbjct: 553 YTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQR 598



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 161/354 (45%), Gaps = 38/354 (10%)

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEP 160
           C  + ++E  F+ +R   + GLK   + Y  L+    K+G + DA F V  EM  +G+ P
Sbjct: 318 CGRTVEAEAIFEEMR---DNGLKPRTRAYNALLRGYVKAGLLKDAEF-VVSEMERSGVSP 373

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           N  TY  LID    AG+   A      M + NV+P+  VF+ ++++    G   ++F VL
Sbjct: 374 NEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVL 433

Query: 221 AEM-NAEVHP--------------------------------VDPDHITIGALMKACANA 247
            EM N+ V P                                ++PD +T   L+     A
Sbjct: 434 REMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRA 493

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G+ DRA E+++ + +         + I IN       W+   ++   M  +G++P+ V  
Sbjct: 494 GKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTY 553

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + LID  G +G+   A E L + K  G+      Y++L+ A +     ++A+  +  M+ 
Sbjct: 554 TTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRV 613

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
             LKP++  +N+LI A  +  +  +   VL  MK   L P+ +TY+ L+ A  R
Sbjct: 614 DGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIR 667



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 178/411 (43%), Gaps = 16/411 (3%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
           A + D   A + L +VQ +GL         +I      G+      +F EM + G++P  
Sbjct: 281 AKAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRT 340

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
             Y AL+ G  KAG +  A      M    V P+   ++ LI A G +G  + A  VL E
Sbjct: 341 RAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKE 400

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  E   V P+      ++ +  + G+  ++ +V + +    ++     Y + I+   + 
Sbjct: 401 M--EASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKF 458

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
              + A + +D M  +G+ PD V  + LID    AGK + A E+ +E    G S    ++
Sbjct: 459 NCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTF 518

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           + ++ +  + + W     L  HM+S  L P   T   LI       +    +E L DMK+
Sbjct: 519 NIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKA 578

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEK 460
            GL P++  Y+ L+ A  ++   E  +      + DG+ P+L+    +I      RR  +
Sbjct: 579 AGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAE 638

Query: 461 ARTLNEHVLSFNSGRPQIENKWTSLALM-----------VYREAIVAGTIP 500
           A T+ ++ +  N  +P +    T +  +           VY E I++G  P
Sbjct: 639 AFTVLQY-MKENDLKPDVVTYTTLMKALIRVEKFDKVPSVYEEMILSGCTP 688



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 168/385 (43%), Gaps = 5/385 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           GR  E   + E+M   GL    + Y+A      K+       F   ++  +   P   T+
Sbjct: 319 GRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTY 378

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           + L+    ++   E A  VL+ ++ + ++ +  +++ ++++    G+    F+V  EM N
Sbjct: 379 SFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMEN 438

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           +G+ P+   Y  +ID   K   +  A   +  M S+ ++PD V +N LI    ++G  DR
Sbjct: 439 SGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDR 498

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A ++  EM    +   P + T   ++ +  +  + D  + +   +    +      YT  
Sbjct: 499 AEELFEEMMEGGY--SPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTL 556

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+   ++G +  A    DDM   G+ P     +ALI+     G  E A    +  +  G+
Sbjct: 557 IDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGL 616

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              +++ +SL+ A    +   +A  + ++MK   LKP V T   L+ AL   ++  K   
Sbjct: 617 KPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPS 676

Query: 396 VLSDMKSLGLCPNTITYSILLVACE 420
           V  +M   G  P+    ++L  A +
Sbjct: 677 VYEEMILSGCTPDRKARAMLRSALK 701


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 175/358 (48%), Gaps = 2/358 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++N+LM+          A  +L  ++  G   D   YTT+I      G++  + ++  EM
Sbjct: 112 SYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEM 171

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G++PN++TY ++I    K+G+V +       M  + V PD V++  LI    + G  
Sbjct: 172 QLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNT 231

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A+ + +EM  E   + PD I   AL+   + +G+V  A +++  + K   +     YT
Sbjct: 232 QAAYKLFSEM--EAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYT 289

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+   + G+ + A  +++ M + G+ P+ V  +AL D    +G+++ A E+L E   +
Sbjct: 290 ALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRK 349

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+ + I +Y++++     A N  +A++L E MK   L P   T   L+ A     ++ K 
Sbjct: 350 GLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKA 409

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            E+L +M   GL P  +T+++L+        +E G  LL    E G++PN   +  I+
Sbjct: 410 RELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIM 467



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 192/436 (44%), Gaps = 42/436 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L R G+I E   LL  ME KG +                                P +
Sbjct: 118 NSLFRLGKIREAHHLLMRMEFKGCI--------------------------------PDV 145

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            ++  ++       + +   Q+++ +Q  GLK +   Y+++I    KSGKV    +V  E
Sbjct: 146 VSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLRE 205

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+  G+ P+   Y  LIDG  K G    A+  +  M ++ + PD + F+ALI     SG 
Sbjct: 206 MMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGK 265

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V  A  +  EM  +    +PD +T  AL+      G++ +A  ++  + +  +      Y
Sbjct: 266 VVEADKLFNEMIKK--GFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTY 323

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T   +   ++G+ + A  +  +M +KG+  +    + +++    AG +  A ++++E K 
Sbjct: 324 TALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKE 383

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+    I+Y++LM A        KA EL   M    L+PTV T N L+  LC   +L  
Sbjct: 384 AGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLED 443

Query: 393 TMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              +L  M   G+ PN  TY SI+   C R +++ +   +       GV+P+   +  +I
Sbjct: 444 GERLLKWMLEKGIMPNAATYNSIMKQYCIR-NNMRISTEIYRGMCAQGVVPDSNTYNILI 502

Query: 452 -GMCSRRYEKARTLNE 466
            G C     KAR + E
Sbjct: 503 KGHC-----KARNMKE 513



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 206/452 (45%), Gaps = 21/452 (4%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEG-AFQVLRLVQEA 121
           FF V      + EA +FF  + N  ++    + N+ ++  +S +D  G   +V     + 
Sbjct: 45  FFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSEFPQL 104

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G+  + + Y  L+ +  + GK+     +   M   G  P+V +Y  +IDG    G++ K 
Sbjct: 105 GVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKV 164

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
                 M+ K +KP+   ++++I    +SG V     VL EM      V PDH+    L+
Sbjct: 165 VQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMK--RGVFPDHVIYTTLI 222

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
                 G    A +++  +    I      ++  I   S +G    A  ++++M KKG  
Sbjct: 223 DGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFE 282

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PDEV  +ALID     G+++ AF +  +    G++  +++Y++L      +     A EL
Sbjct: 283 PDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANEL 342

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
              M    L+  +ST N ++  LC    + + ++++ +MK  GL P+TITY+ L+ A  +
Sbjct: 343 LHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYK 402

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL---------S 470
             ++     LL +  + G+ P +V F  ++ G+C S + E    L + +L         +
Sbjct: 403 TGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAAT 462

Query: 471 FNSGRPQ--IENKWTSLALMVYREAIVAGTIP 500
           +NS   Q  I N    ++  +YR     G +P
Sbjct: 463 YNSIMKQYCIRNN-MRISTEIYRGMCAQGVVP 493



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 191/435 (43%), Gaps = 36/435 (8%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTF 95
           G + + + L+++M+ KGL      Y +    +CKS K +   K      K    P    +
Sbjct: 159 GELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIY 218

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
             L+       +++ A+++   ++   +  D   ++ LI   + SGKV    ++F+EM+ 
Sbjct: 219 TTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIK 278

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G EP+  TY ALIDG  K G++ KAF  +  M    + P+ V + AL     +SG +D 
Sbjct: 279 KGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDT 338

Query: 216 AFDVLAEM------------NAEVHPV---------------------DPDHITIGALMK 242
           A ++L EM            N  V+ +                      PD IT   LM 
Sbjct: 339 ANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMD 398

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
           A    G++ +ARE+ + +    ++ T   + + +N    +G  E    +   M +KG++P
Sbjct: 399 AYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMP 458

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           +    ++++        +  + EI +    QG+     +Y+ L+     A+N ++A  L+
Sbjct: 459 NAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLH 518

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           + M   +   T S+ NALI       +L +  ++  +M+  GL  +   Y++ +     +
Sbjct: 519 KEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEE 578

Query: 423 DDVEVGLMLLSQAKE 437
            ++E  L L  +A E
Sbjct: 579 GNMETTLELCDEAIE 593



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/356 (19%), Positives = 147/356 (41%), Gaps = 23/356 (6%)

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW-EFAC 289
           DP H+      +    AG ++ AR+ +  +  Y +  +     + + C S   D      
Sbjct: 38  DP-HV-FDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVL 95

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            V+ +  + GV  +    + L++     GK+  A  +L   + +G    ++SY++++   
Sbjct: 96  KVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGY 155

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
            +    QK ++L + M+   LKP + T +++I  LC   ++ +  +VL +M   G+ P+ 
Sbjct: 156 CHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDH 215

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---RRYEKARTLNE 466
           + Y+ L+    +  + +    L S+ +   ++P+ + F  +I   S   +  E  +  NE
Sbjct: 216 VIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNE 275

Query: 467 HVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQL 514
            +     G    E  +T+L            A  ++ + +  G  P V   + +   L  
Sbjct: 276 MI---KKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCK 332

Query: 515 PYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 568
               D    L+  +      L  S   ++++G  +     +A  L+EE    G+ P
Sbjct: 333 SGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHP 388



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 5/267 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFFKLVPNPT 91
           L + G +    +LL +M RKGL      Y+     +CK+    +A+K      +   +P 
Sbjct: 330 LCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPD 389

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+  LM     + +   A ++LR + + GL+     +  L+     SGK++    +  
Sbjct: 390 TITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLK 449

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M+  GI PN  TY +++        +  +   Y  M ++ V PD   +N LI    ++ 
Sbjct: 450 WMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKAR 509

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +  A+ +  EM  +   +     +  AL+K      ++  AR++++ + +  +  + E+
Sbjct: 510 NMKEAWFLHKEMVEKRFNLTAS--SYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEI 567

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKK 298
           Y + ++   + G+ E    + D+  +K
Sbjct: 568 YNLFVDMNYEEGNMETTLELCDEAIEK 594


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 172/362 (47%), Gaps = 3/362 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T N+++     + + +GA  V+  +++  +  D   +  LI    ++G VDA   +   M
Sbjct: 159 TLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            N G++P + TY +++ G  K  +  KA   +  M   +V PD   FN LI    + G V
Sbjct: 219 ANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A     EM      V PD ++   L+   +  G++D A    + +    +     +YT
Sbjct: 279 KEAVKFYKEMQHRY--VTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYT 336

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           + I    + G    A  V D+M   G +PD V  + L++      ++  A ++L E + +
Sbjct: 337 MVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEER 396

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G++  + ++++L+       N++ AL+L++ +   +L+P V T N+LI  +C    L K 
Sbjct: 397 GVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKA 456

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
            E+  DM +  + PN ITYSIL+ +   K  VE     L +  + G +PN+  +  II G
Sbjct: 457 NELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKG 516

Query: 453 MC 454
            C
Sbjct: 517 YC 518



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 181/419 (43%), Gaps = 20/419 (4%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML 98
           GR SEC  LL  M R+                  S++ I  +       P P    F++L
Sbjct: 51  GRASECQSLLLRMSRR---------------RGASRREIVSSL--LASSPTPQPQVFDLL 93

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           +     S+    AF+  RL+ +  +         L+   +++G      E +  ++++  
Sbjct: 94  IRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEAYRLVLSSDS 153

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           E N +T   ++    K  +   A      M  + V PD V  N LI A  ++G VD A  
Sbjct: 154 EVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIA 213

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           ++  M      + P  +T  +++K      + D+A+EV++ + + ++      + I I  
Sbjct: 214 LVDSMANR--GLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGG 271

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             + G+ + A   Y +M  + V PD V  S LI      G+++ A   L+E K  G+   
Sbjct: 272 FCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPD 331

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
            + Y+ ++G    A +  +AL + + M      P V T N L+  LC   +L    ++L+
Sbjct: 332 GVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLN 391

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
           +M+  G+ P+  T++ L+    R+ + E  L L        + P++V +  +I GMC +
Sbjct: 392 EMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRK 450



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/442 (23%), Positives = 191/442 (43%), Gaps = 20/442 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFF-KLVPNPTL 92
            R G +   I L++ M  +GL      Y++    +CK ++    KE FR   +    P +
Sbjct: 203 FRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDV 262

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            +FN+L+       + + A +  + +Q   +  D   ++ LI   ++ G++D       E
Sbjct: 263 RSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLRE 322

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSG 211
           M   G+ P+   Y  +I G  +AG +++A      M      PD V +N L+   C Q  
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHR 382

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +D A  +L EM  E   V PD  T   L+      G  + A +++  + +  ++     
Sbjct: 383 LLD-AEKLLNEM--EERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVT 439

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+   + GD   A  ++DDM  + ++P+ +  S LID     G+VE AF  L E  
Sbjct: 440 YNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMV 499

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G    I +Y+S++     + N +K  +  + M+   + P + T N LI      + + 
Sbjct: 500 KKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMH 559

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               V + M+   + P+ +TY++++     + +++    +     + G+ P+        
Sbjct: 560 GAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPD-------- 611

Query: 452 GMCSRRYEKARTLNEHVLSFNS 473
                RY     +N HV + NS
Sbjct: 612 -----RYTYMSLINGHVTAGNS 628



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 132/304 (43%), Gaps = 7/304 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           R G +SE + + ++M   G L     Y+     +CK  + + +A +    +      P L
Sbjct: 344 RAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLL-DAEKLLNEMEERGVTPDL 402

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            TF  L+       + E A Q+   +    L+ D   Y +LI    + G +    E++ +
Sbjct: 403 CTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDD 462

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M    I PN  TY  LID   + GQV  AFG    M  K   P+   +N++I    +SG 
Sbjct: 463 MHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGN 522

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V +    L +M  +   V PD IT   L+        +  A  V+ ++ K  ++     Y
Sbjct: 523 VKKGQQFLQKMRQD--NVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTY 580

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
            + IN  S+ G+ + A  V+  M   G+ PD     +LI+    AG  + AF++  E  +
Sbjct: 581 NMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIH 640

Query: 333 QGIS 336
           +G +
Sbjct: 641 RGFA 644



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 122/278 (43%), Gaps = 7/278 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L +Q R+ +   LL +ME +G+      +       C+ Q   + A + F  +     
Sbjct: 375 NGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCR-QGNFENALQLFDTLLRQRL 433

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N L+       D   A ++   +    +  +   Y+ LI +  + G+V+  F 
Sbjct: 434 RPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFG 493

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EMV  G  PN+ TY ++I G  ++G V K       MR  NV PD + FN LI    
Sbjct: 494 FLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYI 553

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +  AF+V   M  E+  V PD +T   ++   +  G +  A  V+K +    I+  
Sbjct: 554 KEENMHGAFNVFNIMEKEM--VRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPD 611

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
              Y   IN     G+ + A  ++D+M  +G  PD+ F
Sbjct: 612 RYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPDDKF 649



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 37/265 (13%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P   VF+ LI    QS     AF+    +     PV        AL+   + AG    A+
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPAS--ASNALLAVLSRAGWPHLAQ 142

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E Y+++   + +       I ++   +T +++ A +V  +M K+ V PD V  + LID  
Sbjct: 143 EAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDAR 202

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             AG V+AA                                   + L + M +  LKP +
Sbjct: 203 FRAGDVDAA-----------------------------------IALVDSMANRGLKPGI 227

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N+++  LC   +  K  EV   M    + P+  +++IL+    R  +V+  +    +
Sbjct: 228 VTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKE 287

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYE 459
            +   V P++V F C+IG+ SRR E
Sbjct: 288 MQHRYVTPDVVSFSCLIGLFSRRGE 312



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 9/201 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-K 85
           +YN LI    R+G +++  +L +DM  + +L     Y     + C+  + +++AF F  +
Sbjct: 439 TYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQ-VEDAFGFLDE 497

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +V     P + T+N ++     S + +   Q L+ +++  +  D   + TLI    K   
Sbjct: 498 MVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEEN 557

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +   F VF+ M    + P+  TY  +I+G ++ G +  A   +  M    ++PDR  + +
Sbjct: 558 MHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMS 617

Query: 203 LITACGQSGAVDRAFDVLAEM 223
           LI     +G   +AF +  EM
Sbjct: 618 LINGHVTAGNSKQAFQLHDEM 638


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 182/380 (47%), Gaps = 6/380 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P L++++ L++   +++D   A  + RL+   +++ L+ D  L++ LI+  A++   DA 
Sbjct: 193 PDLASYSHLLASLLNTRDPPDAAILERLLGDLRDSRLEPDAPLFSDLISAFARAALPDAA 252

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALIT 205
            E+       G+ P  +   ALI     AG+V +A   +     +  +KP    +NAL+ 
Sbjct: 253 LELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNALLK 312

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G++  A  VL EM+     V PD  T   L+ A   AG+ + AR + K +    +
Sbjct: 313 GYVKIGSLKNAEHVLDEMSE--CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGV 370

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K +  V++  +      GDW+ A +V  +M   GV PD  F + +ID  G    +  A +
Sbjct: 371 KPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMD 430

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +    + +GI   ++++++L+ A         A+EL++ M+     P  +T N +I  L 
Sbjct: 431 VFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLG 490

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           + ++      ++S+MK  GL PN ITY+ L+    R    +  +  +   K DG+ P+  
Sbjct: 491 EQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPT 550

Query: 446 MFKCIIGMCSRRYEKARTLN 465
           M+  ++   ++R      LN
Sbjct: 551 MYHALVNAYAQRGLADHALN 570



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 158/341 (46%), Gaps = 5/341 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+         + A  VL  + E G+  D   Y+ L+    ++G+ ++   +
Sbjct: 302 PRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARIL 361

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G++P+ + +  ++ G    G   KAF     M +  V+PDR  +N +I   G+
Sbjct: 362 LKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGK 421

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +  A DV   M  E   ++PD +T   L+ A    G+ D A E++K + + N     
Sbjct: 422 YNCLGHAMDVFNRMRGEG--IEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGT 479

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN   +   W    ++  +M ++G++P+ +  + L+D  G +G+ + A + ++ 
Sbjct: 480 TTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEA 539

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G+      Y +L+ A +       AL + + M++  L+ +   +N+LI A  +  +
Sbjct: 540 MKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRR 599

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEV 427
           + +   VL  MK     P+ ITY+ L   L+  E+ D V V
Sbjct: 600 VVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQFDKVPV 640



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 174/428 (40%), Gaps = 23/428 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    F+ L+S  A +   + A ++L   Q  GL       T LI+    +G+V     +
Sbjct: 231 PDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEAL 290

Query: 150 FHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           F E   AG I+P    Y AL+ G  K G +  A      M    V PD   ++ L+ A  
Sbjct: 291 FLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYT 350

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G  + A  +L EM A+   V P       ++    + G   +A  V + +H   ++  
Sbjct: 351 RAGRWESARILLKEMEADG--VKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPD 408

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y + I+   +      A  V++ M  +G+ PD V  + LID     G+ + A E+ +
Sbjct: 409 RHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFK 468

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E +      G  +Y+ ++      + W     +   MK   L P + T   L+       
Sbjct: 469 EMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSG 528

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  + ++ +  MK+ GL P+   Y  L+ A  ++   +  L ++   + DG+  + V+  
Sbjct: 529 RYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN 588

Query: 449 CIIGMCS--RRYEKARTLNEHVLSF---NSGRPQIENKWTSLALM-----------VYRE 492
            +I      RR  +A +    VL F   N  RP +    T +  +           +Y E
Sbjct: 589 SLINAFGEDRRVVEAFS----VLQFMKENDFRPDVITYTTLMKALIRVEQFDKVPVIYEE 644

Query: 493 AIVAGTIP 500
            I +G  P
Sbjct: 645 MITSGCAP 652



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 133/295 (45%), Gaps = 2/295 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+   F+ +++      D + AF VLR +  +G++ D   Y  +I T  K   +    +V
Sbjct: 372 PSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDV 431

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+ M   GIEP+V T+  LID   K G+   A   +  MR  N  P    +N +I   G+
Sbjct: 432 FNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGE 491

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
                    +++EM  +   + P+ IT   L+     +G+   A +  + +    +K +P
Sbjct: 492 QERWVGVETMMSEMKEQG--LVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSP 549

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +Y   +N  +Q G  + A +V   M   G+    V L++LI+  G   +V  AF +LQ 
Sbjct: 550 TMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQF 609

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            K       +I+Y++LM A    + + K   +YE M +    P       L +AL
Sbjct: 610 MKENDFRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSAL 664



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS--- 93
           R GR  E ID +E M+  GL     +YHA   N    +     A    K +    L    
Sbjct: 526 RSGRYKEAIDCIEAMKADGLKPSPTMYHA-LVNAYAQRGLADHALNVVKAMRADGLEAST 584

Query: 94  -TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
              N L++     +    AF VL+ ++E   + D   YTTL+    +  + D +  ++ E
Sbjct: 585 VVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQFDKVPVIYEE 644

Query: 153 MVNAGIEPN 161
           M+ +G  P+
Sbjct: 645 MITSGCAPD 653


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 202/467 (43%), Gaps = 10/467 (2%)

Query: 9   LQFPYPNGK-HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF 67
           L + + NG   AN  HDV    H  N   R G   E   LL +ME KG       Y+   
Sbjct: 219 LFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVI 278

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
             +C++ + + EAF   KL+    L     T+++L+      K    A  +L  +   GL
Sbjct: 279 GGLCRAGE-VDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGL 337

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
           K     YT LI    + G     F V  EM+  G++ N+ TY AL+ G  K G + KA  
Sbjct: 338 KPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADA 397

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
               M    +KPD   +N +I    +     R  D+L+EM      + P   T G ++  
Sbjct: 398 LLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKS--NLVPTAYTCGMIING 455

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
               G ++ A  V++++    +K    +YT  I    Q G ++ A  +   M KKGV PD
Sbjct: 456 LCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPD 515

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            +  +++I     + K+E A + L E   +G+   + +Y +L+     +   Q A   ++
Sbjct: 516 VLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFK 575

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M    + P      ALI   C      +   +   M    + P+  TYS L+    R  
Sbjct: 576 EMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNG 635

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
            ++  + LLS+  E G++P++  +  II G C +    KA  L+E++
Sbjct: 636 KLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYM 682



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 180/385 (46%), Gaps = 8/385 (2%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTL 92
           +++GR  E + +L+ M++KG+      Y++    +CKS+K  +      +++     P +
Sbjct: 492 VQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNV 551

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+  L+     S + + A +  + +   G+  +  + T LI    K G       +F  
Sbjct: 552 YTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRC 611

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+   + P+V TY ALI G  + G++  A         K + PD   +N++I+   + G 
Sbjct: 612 MLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGG 671

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           + +AF +   M  +   + P+ IT  AL+     AG+++RARE++  I    +      Y
Sbjct: 672 IGKAFQLHEYMCQK--GISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTY 729

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+   ++G+   A  ++D+MT KGV PD    SALID     G  E A  +  E+  
Sbjct: 730 ATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQ 789

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +G +    S ++LM G C + K  + A +L E M    +KP   T   LI   C    L 
Sbjct: 790 KGFA-STSSLNALMDGFCKSGKVIE-ANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLK 847

Query: 392 KTMEVLSDMKSLGLCPNTITYSILL 416
           +  +   DM+   L PN +TY+ LL
Sbjct: 848 EAEQFFVDMQKRNLMPNALTYTALL 872



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 194/443 (43%), Gaps = 5/443 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPNPT 91
            +RQG   E   + E+M  +G+      Y+A    VCK    +KA         +   P 
Sbjct: 351 FMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPD 410

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+N ++      +++     +L  ++++ L         +I    + G ++    VF 
Sbjct: 411 TQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFE 470

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            MV+ G++PN   Y  LI G  + G+  +A     +M  K V+PD + +N++I    +S 
Sbjct: 471 IMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSR 530

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A D L EM      + P+  T GAL+     +G++  A   +K +    I     V
Sbjct: 531 KMEEAKDYLVEMIE--RGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVV 588

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
            T  I+   + G    A S++  M  + V PD    SALI      GK++ A E+L E  
Sbjct: 589 CTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFL 648

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   + +Y+S++          KA +L+E+M    + P + T NALI  LC   ++ 
Sbjct: 649 EKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIE 708

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  E+   +   GL  N +TY+ ++    +  ++     L  +    GV P+  ++  +I
Sbjct: 709 RARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALI 768

Query: 452 GMCSRRYEKARTLNEHVLSFNSG 474
             C +     + L+  + S   G
Sbjct: 769 DGCRKEGNTEKALSLFLESVQKG 791



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/488 (22%), Positives = 219/488 (44%), Gaps = 56/488 (11%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
            +YN +I    ++   S   DLL +M++  L+            +C+   +I++A R F+
Sbjct: 412 QTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCR-HGSIEDASRVFE 470

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQ----VLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++ +  +    ++ +        EG FQ    +L+++ + G++ D   Y ++I    KS 
Sbjct: 471 IMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSR 530

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K++   +   EM+  G++PNV+TYGALI G  K+G++  A   +  M    + P+ VV  
Sbjct: 531 KMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCT 590

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           ALI    + G+   A  +   M      V PD  T  AL+      G++  A E   ++ 
Sbjct: 591 ALIDGYCKEGSTTEATSIFRCMLG--RSVHPDVRTYSALIHGLLRNGKLQGAME---LLS 645

Query: 262 KYNIKG-TPEVYT---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           ++  KG  P+V+T   I    C Q G  + A  +++ M +KG+ P+ +  +ALI+    A
Sbjct: 646 EFLEKGLVPDVFTYNSIISGFCKQGGIGK-AFQLHEYMCQKGISPNIITYNALINGLCKA 704

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP----- 372
           G++E A E+      +G++   ++Y++++     + N  KA  L++ M    + P     
Sbjct: 705 GEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVY 764

Query: 373 -----------------------------TVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
                                        + S++NAL+   C   ++ +  ++L DM   
Sbjct: 765 SALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDK 824

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEK 460
            + P+ +TY+IL+    +   ++         ++  ++PN + +  ++    M  RR E 
Sbjct: 825 HVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEM 884

Query: 461 ARTLNEHV 468
               +E +
Sbjct: 885 FALFDEMI 892



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 174/382 (45%), Gaps = 18/382 (4%)

Query: 72   KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            K Q A++    F +    P + T+N ++S          AFQ+   + + G+  +   Y 
Sbjct: 636  KLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYN 695

Query: 132  TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
             LI    K+G+++   E+F  +   G+  N  TY  +IDG  K+G ++KAF  +  M  K
Sbjct: 696  ALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLK 755

Query: 192  NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
             V PD  V++ALI  C + G  ++A  +  E    V        ++ ALM     +G+V 
Sbjct: 756  GVPPDSFVYSALIDGCRKEGNTEKALSLFLE---SVQKGFASTSSLNALMDGFCKSGKVI 812

Query: 252  RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
             A ++ + +   ++K     YTI I+   +TG  + A   + DM K+ ++P+ +  +AL+
Sbjct: 813  EANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALL 872

Query: 312  DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                 AG+    F +  E   + I    +++S ++ A     +  K L+L + M      
Sbjct: 873  SGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGN 932

Query: 372  PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
             + +  + LI  LC  + + + ++VL  ++  GL  +  T S  LV C  K         
Sbjct: 933  VSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCST-LVRCFHK--------- 982

Query: 432  LSQAKEDG---VIPNLVMFKCI 450
                K DG   V+ ++V FK +
Sbjct: 983  --AGKMDGAARVLKSMVRFKWV 1002



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 173/396 (43%), Gaps = 8/396 (2%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
            L+R G++   ++LL +   KGL+     Y++     CK Q  I +AF+  + +     +P
Sbjct: 631  LLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCK-QGGIGKAFQLHEYMCQKGISP 689

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
             + T+N L++    + + E A ++   +   GL  +   Y T+I    KSG +   F +F
Sbjct: 690  NIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLF 749

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             EM   G+ P+   Y ALIDGC K G   KA   +     K       + NAL+    +S
Sbjct: 750  DEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSL-NALMDGFCKS 808

Query: 211  GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
            G V  A  +L +M  + H V PDH+T   L+      G +  A + +  + K N+     
Sbjct: 809  GKVIEANQLLEDM-VDKH-VKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNAL 866

Query: 271  VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
             YT  ++  +  G      +++D+M  K + PD V  S +ID     G      +++ + 
Sbjct: 867  TYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDM 926

Query: 331  KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
              +G +V       L+      ++  + L++ E ++   L  +++T + L+       ++
Sbjct: 927  LKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCSTLVRCFHKAGKM 986

Query: 391  PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
                 VL  M      P++   + L+   +   D E
Sbjct: 987  DGAARVLKSMVRFKWVPDSTELNDLINVEQDSTDSE 1022



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 150/332 (45%), Gaps = 4/332 (1%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L++   K+ K++  +  ++ M+ A +  +V+TY  LI+   +AG   +       M  K 
Sbjct: 207 LLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKG 266

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
             P  V +N +I    ++G VD AF++   M+ +   +  D  T   L+       +   
Sbjct: 267 CSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKK--GLVADVFTYSILIDGFGKQKRCTE 324

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A+ + + +    +K     YT  I+   + GD   A  V ++M  +GV  +    +AL+ 
Sbjct: 325 AKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVK 384

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G +E A  +L E    GI     +Y++++      +N  +  +L   MK   L P
Sbjct: 385 GVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVP 444

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           T  T   +I  LC    +     V   M SLG+ PN + Y+ L+    ++   +  + +L
Sbjct: 445 TAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRIL 504

Query: 433 SQAKEDGVIPNLVMFK-CIIGMC-SRRYEKAR 462
               + GV P+++ +   IIG+C SR+ E+A+
Sbjct: 505 KVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAK 536



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 131/327 (40%), Gaps = 38/327 (11%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           ++  LI    K G  D     F      G    +     L+    KA ++   +  Y  M
Sbjct: 168 VFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGM 227

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
              NV  D   +  LI A  ++G       +L EM  E     P  +T   ++     AG
Sbjct: 228 LEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEM--EEKGCSPSLVTYNVVIGGLCRAG 285

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           +VD A E+ K+                                   M KKG++ D    S
Sbjct: 286 EVDEAFELKKL-----------------------------------MDKKGLVADVFTYS 310

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            LID  G   +   A  +L+E  ++G+  G ++Y++L+       +  +A  + E M + 
Sbjct: 311 ILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLAR 370

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            +K  + T NAL+  +C    + K   +L++M  +G+ P+T TY+ ++    ++ +    
Sbjct: 371 GVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRV 430

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-GMC 454
             LLS+ K+  ++P       II G+C
Sbjct: 431 KDLLSEMKKSNLVPTAYTCGMIINGLC 457


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 174/362 (48%), Gaps = 2/362 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    F+ L SV       E A Q    ++   +    +    L+   AK GK D +   
Sbjct: 61  PGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 120

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M+ AG +P V TY  +ID   K G +  A G +  M+ + + PD V +N++I   G+
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D       EM +     +PD IT  +L+     +G++ +  E Y+ + +  +K   
Sbjct: 181 VGRLDDTVYFFEEMKS--MSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNV 238

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  ++   +    + A   Y DM + G +P+E   ++L+D     G +  AF +  E
Sbjct: 239 VSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANE 298

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+   +++Y++L+    +A+  ++A +L+  M +  + P +++ NALI        
Sbjct: 299 MLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKN 358

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + + +E+L+++K  G+ P+ + Y   +      + +E   +++++ +E+G+  N +++  
Sbjct: 359 MDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTT 418

Query: 450 II 451
           ++
Sbjct: 419 LM 420



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 4/272 (1%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P   VF+AL +     G ++ A    ++M      V P   +   L+   A  G+ D  +
Sbjct: 61  PGFGVFDALFSVLIDLGMLEEATQCFSKMKR--FRVFPKTRSCNGLLHKFAKLGKTDGVK 118

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
             +K +     K T   Y I I+C  + GD E A  ++++M  +G+IPD V  +++ID  
Sbjct: 119 RFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGY 178

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
           G  G+++      +E K+      +I+Y+SL+     +    K LE Y  MK   LKP V
Sbjct: 179 GKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNV 238

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            + + L+ A C  D + + ++   DM+ +G  PN  TY+ L+ A  +  ++     L ++
Sbjct: 239 VSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANE 298

Query: 435 AKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
             E GV  N+V +  +I G+C + R ++A  L
Sbjct: 299 MLEVGVEWNVVTYTALIDGLCDAERMKEAEKL 330



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 203/452 (44%), Gaps = 18/452 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    ++G I     L E+M+ +GL+     Y++      K  + + +   FF+ 
Sbjct: 135 TYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGR-LDDTVYFFEE 193

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +    P + T+N L++  C S K  +G  +  R ++++GLK +   Y+TL+    K  
Sbjct: 194 MKSMSCEPDVITYNSLINCFCKSGKLPKG-LEFYREMKQSGLKPNVVSYSTLVDAFCKED 252

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +    + + +M   G  PN  TY +L+D   K G ++ AF     M    V+ + V + 
Sbjct: 253 MMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYT 312

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           ALI     +  +  A  +  +M      V P+  +  AL+     A  +DRA E+   + 
Sbjct: 313 ALIDGLCDAERMKEAEKLFGKMVTA--GVIPNLASYNALIHGFVKAKNMDRALELLNELK 370

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              I+    +Y   I         E A  V ++M + G+  + +  + L+D    +G   
Sbjct: 371 GRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPT 430

Query: 322 AAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKS-IKLKPTVSTMNA 379
               +L+E +     V ++++  L+ G C N K   KA++ +  M +   L+P  +   A
Sbjct: 431 EGLHLLEEMQELDHEVTVVTFCVLIDGLCKN-KLVSKAIDYFGRMSNDFGLQPNAAVYTA 489

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           +I  LC  +Q+     +   M   GL P+   Y+ L+    ++ ++   L L  +  E G
Sbjct: 490 MIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIG 549

Query: 440 VIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 469
           +  +L+ +  ++   S+  + +KAR+  E ++
Sbjct: 550 MKLDLLAYTSLVWGFSQCNQLQKARSFLEEMI 581



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 161/385 (41%), Gaps = 45/385 (11%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +YN LI    + G++ + ++   +M++ GL      Y       CK    Q+AIK     
Sbjct: 205 TYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDM 264

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            ++   P   T+  L+       +   AF++   + E G++ +   YT LI     + ++
Sbjct: 265 RRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERM 324

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
               ++F +MV AG+ PN+ +Y ALI G  KA  + +A      ++ + ++PD +++   
Sbjct: 325 KEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTF 384

Query: 204 ITA-CG----------------------------------QSGAVDRAFDVLAEMNAEVH 228
           I   CG                                  +SG       +L EM    H
Sbjct: 385 IWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDH 444

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
            V    +T   L+        V +A + + +M + + ++    VYT  I+   +    + 
Sbjct: 445 EVTV--VTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKA 502

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A ++++ M ++G++PD    ++L+D     G +  A  +  +    G+ + +++Y+SL+ 
Sbjct: 503 ATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVW 562

Query: 348 ACSNAKNWQKALELYEHMKSIKLKP 372
             S     QKA    E M   ++ P
Sbjct: 563 GFSQCNQLQKARSFLEEMIGEEILP 587



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 5/175 (2%)

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           T+ TF +L+  +C +   S+      R+  + GL+ +  +YT +I    K  +V A   +
Sbjct: 447 TVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTL 506

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M   G+ P+   Y +L+DG  K G + +A      M    +K D + + +L+    Q
Sbjct: 507 FEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQ 566

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA--REVYKMIHK 262
              + +A   L EM  E   + PD +    ++K     G +D A   + Y M H+
Sbjct: 567 CNQLQKARSFLEEMIGE--EILPDEVLCIGVLKKHYELGCIDEAVGLQSYLMKHQ 619


>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
          Length = 475

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 181/385 (47%), Gaps = 9/385 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + GR++    LL++M R G+  ++ + +    +    +K         K++ N    PT+
Sbjct: 79  KSGRVAHARQLLDEMPRHGV-KVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTV 137

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+ +L+   ++++D      V   ++   L  D   Y+++I    ++G V    EVF E
Sbjct: 138 GTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDE 197

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            V  GIEPN HTYGALI+G  K GQ+  A      M+ + V  +++VFN +I    +   
Sbjct: 198 CVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNM 257

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           VD+A ++  +M  E   ++ D  T   L      A ++D A+ + +++ +  ++     Y
Sbjct: 258 VDKALEI--KMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSY 315

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  I+     GD   A  ++ +M   G  P  V  + ++D     G +  A     E + 
Sbjct: 316 TTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEK 375

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +G+   I SY++L+ G C N K    AL L+E MK    KP +    ALI+ L    +  
Sbjct: 376 KGLVPDIYSYAALVHGHCVNGK-VDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSE 434

Query: 392 KTMEVLSDMKSLGLCPNTITYSILL 416
           +  ++  +M   GL P+   YS L+
Sbjct: 435 EAFQLYDNMLGDGLTPDDALYSALV 459



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 171/425 (40%), Gaps = 49/425 (11%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A Q+L  +   G+K +   Y +L+    +    D + E+   M N GIEP V TY  L+D
Sbjct: 86  ARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVD 145

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G + A  + K    +  M+SKN+  D   ++++I A                        
Sbjct: 146 GLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAY----------------------- 182

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
                           AG V RA EV+       I+     Y   IN   + G  E A  
Sbjct: 183 --------------CRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEM 228

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +  DM  +GV  +++  + +ID       V+ A EI    +  GI + + +Y++L     
Sbjct: 229 LVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLR 288

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A    +A  L   M    ++P   +   LI+  C+   + +   +  +M   G  P+ +
Sbjct: 289 RANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLV 348

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS--------RRYE-- 459
           TY++++    +K  +       ++ ++ G++P++  +  ++ G C         R +E  
Sbjct: 349 TYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEM 408

Query: 460 KARTLNEHVLSFNSGRPQIENKWTS-LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 518
           K R    +++++ +    +  +  S  A  +Y   +  G  P   + S ++G L      
Sbjct: 409 KQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQ 468

Query: 519 DIRER 523
           +++ R
Sbjct: 469 NVKPR 473



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 136/285 (47%), Gaps = 4/285 (1%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           ++DG  K+G+VA A      M    VK + + +N+L+ A  +    DR  ++L  M  E 
Sbjct: 73  VVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENE- 131

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             ++P   T   L+   + A  + +   V++ +   N+ G    Y+  IN   + G+   
Sbjct: 132 -GIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRR 190

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  V+D+    G+ P+E    ALI+     G++EAA  ++ + + +G+ +  I +++++ 
Sbjct: 191 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 250

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                    KALE+   M+ + ++  V T N L   L   +++ +   +L  M   G+ P
Sbjct: 251 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 310

Query: 408 NTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           N ++Y+ L+ + C   D VE    L  +   +G  P+LV +  ++
Sbjct: 311 NHVSYTTLISIHCNEGDMVEA-RRLFREMAGNGAEPSLVTYNVMM 354



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 112/262 (42%), Gaps = 5/262 (1%)

Query: 195 PDRVV-FNALITACG--QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           PD V   +A +   G  +SG V  A  +L EM    H V  + +   +L+ A       D
Sbjct: 62  PDSVTPLSASVVVDGYCKSGRVAHARQLLDEMPR--HGVKVNALCYNSLLDAYTREKDDD 119

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           R  E+ K++    I+ T   YTI ++  S   D     +V+++M  K +  D  F S++I
Sbjct: 120 RVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 179

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           +    AG V  A E+  E    GI     +Y +L+         + A  L   M+   + 
Sbjct: 180 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVG 239

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
                 N +I   C  + + K +E+   M+ +G+  +  TY+ L     R + ++    L
Sbjct: 240 INQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNL 299

Query: 432 LSQAKEDGVIPNLVMFKCIIGM 453
           L    E GV PN V +  +I +
Sbjct: 300 LRIMIEKGVRPNHVSYTTLISI 321


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 176/383 (45%), Gaps = 27/383 (7%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++T N    +C   K  + AFQ+++L+   G   D   Y+ +IT   ++ KV+  F +F 
Sbjct: 421 VNTANFARCLCGMGK-FDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQ 479

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM + G+ P+V+TY  LID   K G + +A   +  M S    P  V + AL+ A  ++ 
Sbjct: 480 EMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTK 539

Query: 212 AVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRAREVY-KMIHKYNIK 266
            V +A D+   M      VD    P+ IT  AL+     AG+  +A EVY KMI   +  
Sbjct: 540 QVPQASDIFHRM------VDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNV 593

Query: 267 GTPEVY------TIAINCCSQTGDWEFACSVY---------DDMTKKGVIPDEVFLSALI 311
           G+   +      +IA N  +     +  C  +         D M+  G  P+ +   ALI
Sbjct: 594 GSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALI 653

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D     GK++ A E+       G    + +Y+SL+ A    +    A+++   M      
Sbjct: 654 DGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCT 713

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P V T  A+I  LC   +  K +++LS M+  G  PN +TY+ L+    +   V++ L L
Sbjct: 714 PNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQL 773

Query: 432 LSQAKEDGVIPNLVMFKCIIGMC 454
            +Q    G  PN V ++ +I  C
Sbjct: 774 FTQMITQGCAPNYVTYRVLINHC 796



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/501 (23%), Positives = 216/501 (43%), Gaps = 40/501 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L   G+  +   +++ M RKG +     Y      +C++ K +++AF  F+ + +    P
Sbjct: 430 LCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMK-VEKAFLLFQEMKSVGVIP 488

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T+ +L+         E A      ++  G       YT L+    K+ +V    ++F
Sbjct: 489 DVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIF 548

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM----------------RSKNVK 194
           H MV+AG  PN  TY AL+DG  KAG+  KA   Y  M                 + ++ 
Sbjct: 549 HRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIA 608

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ V + ALI    ++  V  A ++L  M++  +  +P+HI   AL+      G++D A+
Sbjct: 609 PNVVTYGALIDGLCKAHKVVDAQELLDVMSS--NGCEPNHIIYDALIDGFCKVGKLDNAQ 666

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           EV+  + K     T   YT  I+   +    + A  V   M +    P+ V  +A+ID  
Sbjct: 667 EVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGL 726

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G+ + A ++L   + +G +  +++Y+SL+     +     +L+L+  M +    P  
Sbjct: 727 CRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNY 786

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T   LI   C    L +   +LS+MK          Y  ++    +K    +G  LL +
Sbjct: 787 VTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLG--LLEE 844

Query: 435 AKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG-RPQIENKWTSL------ 485
            +  G++    ++  +I   S+  R EKA  L++ ++  +S      ++ +TSL      
Sbjct: 845 LESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCL 904

Query: 486 ------ALMVYREAIVAGTIP 500
                 A  +Y E    G +P
Sbjct: 905 ASQLEKAFELYSEITRKGVVP 925



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 178/397 (44%), Gaps = 18/397 (4%)

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQV 114
           ++KV  A F           +AF+  KL+      P  ST++ +++    +   E AF +
Sbjct: 418 LNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLL 477

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
            + ++  G+  D   YT LI +  K G ++     F EM + G  P+V TY AL+    K
Sbjct: 478 FQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLK 537

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM----------- 223
             QV +A   +  M      P+ + ++AL+    ++G   +A +V A+M           
Sbjct: 538 TKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDF 597

Query: 224 ---NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
                    + P+ +T GAL+     A +V  A+E+  ++     +    +Y   I+   
Sbjct: 598 YFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFC 657

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           + G  + A  V+  M+K G +P     ++LID      +++ A ++L +      +  ++
Sbjct: 658 KVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVV 717

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +Y++++         QKAL+L   M+     P V T  +LI  L    ++  ++++ + M
Sbjct: 718 TYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQM 777

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
            + G  PN +TY +L+  C     ++    LLS+ K+
Sbjct: 778 ITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ 814



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 184/436 (42%), Gaps = 33/436 (7%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH+Y   ++  ++ +  D+   M   G       Y A    +CK+ ++ K    + K++ 
Sbjct: 532 LHAY---LKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIG 588

Query: 89  N-------------------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
                               P + T+  L+     +     A ++L ++   G + +  +
Sbjct: 589 TSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHII 648

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  LI    K GK+D   EVF  M   G  P VHTY +LID   K  ++  A      M 
Sbjct: 649 YDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQML 708

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
             +  P+ V + A+I    + G   +A  +L+ M  E    +P+ +T  +L+     +G+
Sbjct: 709 ESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMM--EKRGCNPNVVTYTSLIDGLGKSGK 766

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV--FL 307
           VD + +++  +           Y + IN C   G  + A S+  +M K+   P  V  + 
Sbjct: 767 VDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEM-KQTYWPKYVQGYC 825

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           S +    G + K  A+  +L+E ++ G+      Y  L+ + S A   +KALEL++ M  
Sbjct: 826 SVV---QGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMME 882

Query: 368 IKLKPTVS---TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           +     ++   T  +LI ALC   QL K  E+ S++   G+ P    +  L+    + + 
Sbjct: 883 VSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNK 942

Query: 425 VEVGLMLLSQAKEDGV 440
               L L     ++GV
Sbjct: 943 WNEALQLCYSMCDEGV 958



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 177/436 (40%), Gaps = 59/436 (13%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL----------- 123
           KA++E  R       P+ +T+N L+ V A++   +  F+V + + E G            
Sbjct: 190 KALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFA 249

Query: 124 ---------------------KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
                                K D  L T +I+   ++   D      H M      PNV
Sbjct: 250 QALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNV 309

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY  L+ G  K  Q+        +M ++   P+  +FN+L+ +   +     A+ +L  
Sbjct: 310 VTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNR 369

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDR------AREVY-KMIHKYNIKGTPEVYTIA 275
           M     P  P ++     + +  +  ++        A +VY +M+    +         A
Sbjct: 370 MAGCGCP--PGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFA 427

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
             C    G ++ A  +   M +KG +PD    S +I F   A KVE AF + QE K+ G+
Sbjct: 428 -RCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV 486

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              + +Y+ L+ +       ++A   ++ M+S+   P+V T  AL+ A     Q+P+  +
Sbjct: 487 IPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASD 546

Query: 396 VLSDMKSLGLCPNTITYSILL----VACERKDDVEVGLMLLSQAKE------------DG 439
           +   M   G  PNTITYS L+     A E +   EV   ++  +              D 
Sbjct: 547 IFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDS 606

Query: 440 VIPNLVMFKCII-GMC 454
           + PN+V +  +I G+C
Sbjct: 607 IAPNVVTYGALIDGLC 622



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 155/366 (42%), Gaps = 23/366 (6%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           Y  G+H +    ++  + +Y  LI    +  ++ +  +LL+ M   G      +Y A   
Sbjct: 598 YFEGEHTD---SIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALID 654

Query: 69  NVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
             CK  K   A +  FR  K    PT+ T+  L+      +  + A +VL  + E+    
Sbjct: 655 GFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTP 714

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           +   YT +I    + G+     ++   M   G  PNV TY +LIDG  K+G+V  +   +
Sbjct: 715 NVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLF 774

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMK 242
             M ++   P+ V +  LI  C  +G +D A  +L+EM     P        +  G   K
Sbjct: 775 TQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKK 834

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-- 300
             A+ G ++        +  + +     VY + I+  S+ G  E A  ++ +M +     
Sbjct: 835 FIASLGLLEE-------LESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSL 887

Query: 301 -IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
            I  +   ++LI     A ++E AFE+  E   +G+   + ++  L+        W +AL
Sbjct: 888 NITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNEAL 947

Query: 360 ELYEHM 365
           +L   M
Sbjct: 948 QLCYSM 953



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/476 (18%), Positives = 170/476 (35%), Gaps = 87/476 (18%)

Query: 64  HARFFN------VCKSQKAIKEAFRFF-----KLVPNPTLSTFNMLMSVCASSKDSEGAF 112
           H  F N      V +S +  +   RFF     ++  + T + +N L  V      +    
Sbjct: 98  HRDFLNDAVVVAVLRSVRTPELCVRFFLWAERQVGYSHTGACYNALAEVLHFDDRARTTE 157

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           ++LR + E   +   +L   ++  C + G      E    + + G  P+  TY AL+   
Sbjct: 158 RLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVL 217

Query: 173 AKAGQVAKAF--------------------------------GAYGIMRSKNVKPDRVVF 200
           A AGQ+   F                                 A  ++  ++ K D V+ 
Sbjct: 218 ATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDALVMIEREDFKLDTVLC 277

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
             +I+   ++   D A   L  M    +   P+ +T   L+       Q+   + +  M+
Sbjct: 278 TQMISGLMEASLFDEAISFLHRMRC--NSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMM 335

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI--------- 311
                   P ++   ++      D+ +A  + + M   G  P  V  +  I         
Sbjct: 336 MNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEEL 395

Query: 312 -----------------------------DFAG---HAGKVEAAFEILQEAKNQGISVGI 339
                                        +FA      GK + AF+I++    +G     
Sbjct: 396 PSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDT 455

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            +YS ++     A   +KA  L++ MKS+ + P V T   LI + C    + +      +
Sbjct: 456 STYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDE 515

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           M+S+G  P+ +TY+ LL A  +   V     +  +  + G  PN + +  ++ G+C
Sbjct: 516 MESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLC 571



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 73/364 (20%), Positives = 135/364 (37%), Gaps = 36/364 (9%)

Query: 251 DRAREVYKMIHKY---NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           DRAR   +++ +    + +    +  + +  C + G W  A      +   G  P     
Sbjct: 151 DRARTTERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATY 210

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           +AL+     AG+++  F + +E    G      +      A      W  AL + E  + 
Sbjct: 211 NALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWSDALVMIER-ED 269

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
            KL   + T   +I+ L +     + +  L  M+     PN +TY  LL    +K  +  
Sbjct: 270 FKLDTVLCTQ--MISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGW 327

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL----------------NEHVL 469
              ++S    +G  PN  +F  ++   C +R Y  A  L                N  + 
Sbjct: 328 CKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIG 387

Query: 470 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL- 528
           S  SG         +LA  VY E + +  +      +    CL      D   ++++ + 
Sbjct: 388 SICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMM 447

Query: 529 --GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV--------SFKEIPVV 578
             G   D    S + + +    + + +AF L +E  S G++P V        SF ++ ++
Sbjct: 448 RKGFVPDTSTYSKVITFLCEAMKVE-KAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLI 506

Query: 579 VDAR 582
             AR
Sbjct: 507 EQAR 510


>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
          Length = 551

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 182/385 (47%), Gaps = 9/385 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + GR++    LL++M R G+  ++ + +    +    +K         K++ N    PT+
Sbjct: 155 KSGRVAHARQLLDEMPRHGV-KVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTV 213

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+ +L+   ++++D      V   ++   L  D   Y+++I    ++G V    EVF E
Sbjct: 214 GTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDE 273

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            V  GIEPN HTYGALI+G  K GQ+  A      M+ + V  +++VFN +I    +   
Sbjct: 274 CVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNM 333

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           VD+A ++  +M  E   ++ D  T   L      A ++D A+ + +++ +  ++     Y
Sbjct: 334 VDKALEI--KMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSY 391

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  I+     GD   A  ++ +M   G  P  V  + ++D     G +  A    +E + 
Sbjct: 392 TTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEK 451

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +G+   I SY++L+ G C N K    AL L+E MK    KP +    ALI+ L    +  
Sbjct: 452 KGLVPDIYSYAALVHGHCVNGK-VDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSE 510

Query: 392 KTMEVLSDMKSLGLCPNTITYSILL 416
           +  ++  +M   GL P+   YS L+
Sbjct: 511 EAFQLYDNMLGDGLTPDDALYSALV 535



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 170/425 (40%), Gaps = 49/425 (11%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A Q+L  +   G+K +   Y +L+    +    D + E+   M N GIEP V TY  L+D
Sbjct: 162 ARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVD 221

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G + A  + K    +  M+SKN+  D   ++++I A                        
Sbjct: 222 GLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAY----------------------- 258

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
                           AG V RA EV+       I+     Y   IN   + G  E A  
Sbjct: 259 --------------CRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEM 304

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +  DM  +GV  +++  + +ID       V+ A EI    +  GI + + +Y++L     
Sbjct: 305 LVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLR 364

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A    +A  L   M    ++P   +   LI+  C+   + +   +  +M   G  P+ +
Sbjct: 365 RANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLV 424

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS--------RRYE-- 459
           TY++++    +K  +        + ++ G++P++  +  ++ G C         R +E  
Sbjct: 425 TYNVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEM 484

Query: 460 KARTLNEHVLSFNSGRPQIENKWTS-LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 518
           K R    +++++ +    +  +  S  A  +Y   +  G  P   + S ++G L      
Sbjct: 485 KQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQ 544

Query: 519 DIRER 523
           +++ R
Sbjct: 545 NVKPR 549



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 136/285 (47%), Gaps = 4/285 (1%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           ++DG  K+G+VA A      M    VK + + +N+L+ A  +    DR  ++L  M  E 
Sbjct: 149 VVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENE- 207

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             ++P   T   L+   + A  + +   V++ +   N+ G    Y+  IN   + G+   
Sbjct: 208 -GIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRR 266

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  V+D+    G+ P+E    ALI+     G++EAA  ++ + + +G+ +  I +++++ 
Sbjct: 267 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 326

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                    KALE+   M+ + ++  V T N L   L   +++ +   +L  M   G+ P
Sbjct: 327 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 386

Query: 408 NTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           N ++Y+ L+ + C   D VE    L  +   +G  P+LV +  ++
Sbjct: 387 NHVSYTTLISIHCNEGDMVE-ARRLFREMAGNGAEPSLVTYNVMM 430



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 112/262 (42%), Gaps = 5/262 (1%)

Query: 195 PDRVV-FNALITACG--QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           PD V   +A +   G  +SG V  A  +L EM    H V  + +   +L+ A       D
Sbjct: 138 PDSVTPLSASVVVDGYCKSGRVAHARQLLDEM--PRHGVKVNALCYNSLLDAYTREKDDD 195

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           R  E+ K++    I+ T   YTI ++  S   D     +V+++M  K +  D  F S++I
Sbjct: 196 RVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 255

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           +    AG V  A E+  E    GI     +Y +L+         + A  L   M+   + 
Sbjct: 256 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVG 315

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
                 N +I   C  + + K +E+   M+ +G+  +  TY+ L     R + ++    L
Sbjct: 316 INQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNL 375

Query: 432 LSQAKEDGVIPNLVMFKCIIGM 453
           L    E GV PN V +  +I +
Sbjct: 376 LRIMIEKGVRPNHVSYTTLISI 397



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           I++G I E     ++ME+KGL+     Y A     C + K +  A R F+ +      P 
Sbjct: 434 IKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGK-VDVALRLFEEMKQRGSKPN 492

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           L  +  L+S  A    SE AFQ+   +   GL  D  LY+ L+ +
Sbjct: 493 LVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGS 537


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 177/375 (47%), Gaps = 8/375 (2%)

Query: 73  SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           SQ ++  +F  +  KL   P + TF  L++  C   +  +  +   R+V E G + +  +
Sbjct: 130 SQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMV-EMGYEPNVVI 188

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y T+I    KS +VD   ++ + M   GI P+  TY +LI G   +G+   A      M 
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMT 248

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            + + PD   FNALI AC + G +  A ++  EM      +DPD +T   L+       +
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRISEAEELYEEMIR--RSLDPDIVTYSLLIYGLCMYSR 306

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D A +++  +           Y+I IN   ++   E    ++ +M+++GV+ + V  + 
Sbjct: 307 LDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTV 366

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 368
           LI     AGK+  A EI +     G+   II+Y+ L+ G C N K  +KAL +   M+  
Sbjct: 367 LIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGK-IEKALVILADMQKS 425

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            +   + T N +I  +C   ++    ++   +   GL P+  TY+ +++   +K      
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEA 485

Query: 429 LMLLSQAKEDGVIPN 443
             L  + KEDG++PN
Sbjct: 486 DALFRKMKEDGILPN 500



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 2/357 (0%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L T N+L++          A   L  + + G + D   + +L+    +  ++     +F
Sbjct: 115 NLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMF 174

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             MV  G EPNV  Y  +IDG  K+ QV  A      M    ++PD V +N+LI+    S
Sbjct: 175 DRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNS 234

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G  D A  +++ M      + PD  T  AL+ AC   G++  A E+Y+ + + ++     
Sbjct: 235 GRWDDATRMVSCMTK--REIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIV 292

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y++ I         + A  ++  M  KG  PD V  S LI+    + KVE   ++  E 
Sbjct: 293 TYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM 352

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +G+    ++Y+ L+     A     A E+++ M    + P + T N L+  LCD  ++
Sbjct: 353 SQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKI 412

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            K + +L+DM+  G+  + +TY+I++    +  +V     L       G+ P++  +
Sbjct: 413 EKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTY 469



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 193/414 (46%), Gaps = 15/414 (3%)

Query: 83  FFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           FF +V   P P+++ F+ L+S  +  K  +    +   +Q  G+  +      L+    +
Sbjct: 69  FFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCR 128

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
             ++        +M+  G EP++ T+G+L++G  +  ++  A   +  M     +P+ V+
Sbjct: 129 CSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVI 188

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +N +I    +S  VD A D+L  M  EV  + PD +T  +L+    N+G+ D A  +   
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRM--EVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSC 246

Query: 260 IHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + K  I   P+V+T    I+ C + G    A  +Y++M ++ + PD V  S LI      
Sbjct: 247 MTKREI--YPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMY 304

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            +++ A ++     ++G    +++YS L+     +K  +  ++L+  M    +     T 
Sbjct: 305 SRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTY 364

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LI   C   +L    E+   M   G+ PN ITY++LL        +E  L++L+  ++
Sbjct: 365 TVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQK 424

Query: 438 DGVIPNLVMFKCII-GMCSRRYEKARTLNEHV-LSFNSGRPQIENKWTSLALMV 489
            G+  ++V +  II GMC +  E A   + +  L+     P I   WT  A+M+
Sbjct: 425 SGMDADIVTYNIIIRGMC-KAGEVADAWDLYCSLNLKGLTPDI---WTYTAMML 474



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/339 (22%), Positives = 142/339 (41%), Gaps = 34/339 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L +  ++   +DLL  ME  G+                                 P   T
Sbjct: 196 LCKSKQVDNALDLLNRMEVDGI--------------------------------RPDAVT 223

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N L+S   +S   + A +++  + +  +  D   +  LI  C K G++    E++ EM+
Sbjct: 224 YNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMI 283

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
              ++P++ TY  LI G     ++ +A   +G M SK   PD V ++ LI    +S  V+
Sbjct: 284 RRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVE 343

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
               +  EM+     V  + +T   L++    AG+++ A E++K +    +      Y +
Sbjct: 344 HGMKLFCEMSQ--RGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNV 401

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            ++     G  E A  +  DM K G+  D V  + +I     AG+V  A+++      +G
Sbjct: 402 LLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKG 461

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
           ++  I +Y+++M          +A  L+  MK   + P 
Sbjct: 462 LTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDGILPN 500



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 119/245 (48%), Gaps = 13/245 (5%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAI 77
            ++   + ++N LI    ++GRISE  +L E+M R+  LD D V Y    + +C   + +
Sbjct: 250 REIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRS-LDPDIVTYSLLIYGLCMYSR-L 307

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EA + F  + +    P + T+++L++    SK  E   ++   + + G+  +   YT L
Sbjct: 308 DEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVL 367

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    ++GK++   E+F  MV  G+ PN+ TY  L+ G    G++ KA      M+   +
Sbjct: 368 IQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGM 427

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
             D V +N +I    ++G V  A+D+   +N  +  + PD  T  A+M      G    A
Sbjct: 428 DADIVTYNIIIRGMCKAGEVADAWDLYCSLN--LKGLTPDIWTYTAMMLGLYKKGLRGEA 485

Query: 254 REVYK 258
             +++
Sbjct: 486 DALFR 490


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 202/428 (47%), Gaps = 17/428 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           N L  +GR+SE ++L++ M   G    L+ ++ + +     +C S K  +      K+V 
Sbjct: 264 NGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNG----LCLSGKEAEAMLLIDKMVE 319

Query: 89  ---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P   T+  +++V   S  +  A ++LR ++E  +K D   Y+ +I    K G +D 
Sbjct: 320 YGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDN 379

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            F +F+EM   GI  N+ TY  LI G   AG+          M  + + P+ V F+ LI 
Sbjct: 380 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 439

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
           +  + G +  A ++  EM   +H  + PD IT  +L+        +D+A ++  ++    
Sbjct: 440 SFVKEGKLREAEELHKEM---IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 496

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
                  + I IN   +    +    ++  M+ +GV+ D V  + LI      GK+  A 
Sbjct: 497 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 556

Query: 325 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           E+ QE  ++ +   I++Y  L+ G C N ++ +KALE++E ++  K++  +   N +I  
Sbjct: 557 ELFQEMVSRKVPPNIVTYKILLDGLCDNGES-EKALEIFEKIEKSKMELDIGIYNIIIHG 615

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           +C+  ++    ++   +   G+ P   TY+I++    +K  +    +L  + +EDG  P+
Sbjct: 616 MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 675

Query: 444 LVMFKCII 451
              +  +I
Sbjct: 676 GWTYNILI 683



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 172/390 (44%), Gaps = 41/390 (10%)

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  KL   P   TF+ L++ +C   + SE    V R+V E G K D     TL+     S
Sbjct: 246 KIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV-EMGHKPDLITINTLVNGLCLS 304

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK      +  +MV  G +PN  TYG +++   K+GQ A A      M  +N+K D V +
Sbjct: 305 GKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKY 364

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + +I    + G++D AF++  EM  E+  +  + IT   L+    NAG+           
Sbjct: 365 SIIIDGLCKHGSLDNAFNLFNEM--EMKGITTNIITYNILIGGFCNAGR----------- 411

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                                   W+    +  DM K+ + P+ V  S LID     GK+
Sbjct: 412 ------------------------WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKL 447

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A E+ +E  ++GI+   I+Y+SL+       +  KA ++ + M S    P + T N L
Sbjct: 448 REAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 507

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I   C  +++   +E+   M   G+  +T+TY+ L+        + V   L  +     V
Sbjct: 508 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 567

Query: 441 IPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
            PN+V +K ++ G+C     EKA  + E +
Sbjct: 568 PPNIVTYKILLDGLCDNGESEKALEIFEKI 597



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 149/326 (45%), Gaps = 3/326 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           ++ L +  AK+ + D +  +  +M   GI  N++T   +I+   +  ++  AF A G + 
Sbjct: 189 FSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKII 248

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               +P+ + F+ LI      G V  A +++  M    H   PD ITI  L+     +G+
Sbjct: 249 KLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK--PDLITINTLVNGLCLSGK 306

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
              A  +   + +Y  +     Y   +N   ++G    A  +   M ++ +  D V  S 
Sbjct: 307 EAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSI 366

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           +ID     G ++ AF +  E + +GI+  II+Y+ L+G   NA  W    +L   M   K
Sbjct: 367 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 426

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           + P V T + LI +     +L +  E+  +M   G+ P+TITY+ L+    +++ ++   
Sbjct: 427 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKAN 486

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMC 454
            ++      G  PN+  F  +I G C
Sbjct: 487 QMVDLMVSKGCDPNIRTFNILINGYC 512



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 156/359 (43%), Gaps = 13/359 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFFKLVPNPT 91
           L + G +    +L  +ME KG+      Y+     F N  +     K      K   NP 
Sbjct: 371 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 430

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + TF++L+           A ++ + +   G+  D   YT+LI    K   +D   ++  
Sbjct: 431 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 490

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            MV+ G +PN+ T+  LI+G  KA ++      +  M  + V  D V +N LI    + G
Sbjct: 491 LMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 550

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A ++  EM +   P  P+ +T   L+    + G+ ++A E+++ I K  ++    +
Sbjct: 551 KLNVAKELFQEMVSRKVP--PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 608

Query: 272 YTIAIN--CCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           Y I I+  C +   D  W+  CS    +  KGV P     + +I      G +  A  + 
Sbjct: 609 YNIIIHGMCNASKVDDAWDLFCS----LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 664

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           ++ +  G +    +Y+ L+ A     +  K+++L E +K        ST+  +I  L D
Sbjct: 665 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSD 723


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 208/468 (44%), Gaps = 17/468 (3%)

Query: 5   GKNMLQFPYPNG---KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK 61
           GK+ML   Y  G    H  Y   +       N  ++Q  I     + E+M  + +     
Sbjct: 321 GKSMLDEMYTMGLKPDHVAYTALI-------NGFVKQSDIGGAFQVKEEMFARKIKLNTF 373

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            Y+A    +CK     K    F ++      P + T+N L+      ++ E A+++L  +
Sbjct: 374 TYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEI 433

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           ++  L A+  +   ++      G +    E+F EM++ G++PN+  Y  ++ G  K G+ 
Sbjct: 434 KKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRF 493

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            +A    G+M+ + + PD   +N +I    ++G ++     L EM A+   + P+  T G
Sbjct: 494 EEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAK--GLKPNVYTYG 551

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           A +     AG++  A   +  +    I     + T  I+   + G+   A + +  M  +
Sbjct: 552 AFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQ 611

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV+PD    S LI      GK++ A  +  E  ++G+   + +Y+SL+       + + A
Sbjct: 612 GVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAA 671

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            EL++ M    + P + T NALI  LC   ++ K  E+   +   GL  N++TYS ++  
Sbjct: 672 FELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAG 731

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
             +  ++     L    K  GV P+  ++  +I  C +    EKA +L
Sbjct: 732 YCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSL 779



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 119/483 (24%), Positives = 202/483 (41%), Gaps = 52/483 (10%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +++Y  LI    R G++ E   +L DME KG +     Y      +C++   + EA    
Sbjct: 232 VYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGD-VDEALELK 290

Query: 85  KLVPNPTLSTFNMLMSV-----CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           + + N  L   N + +      C   + +EG   +L  +   GLK D   YT LI    K
Sbjct: 291 RSMANKGLLPDNYIYATLIDGFCRQKRSTEGK-SMLDEMYTMGLKPDHVAYTALINGFVK 349

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
              +   F+V  EM    I+ N  TY ALI G  K G + KA   +  M    +KPD   
Sbjct: 350 QSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQT 409

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +N LI    +   +++A+++L E+  E   +  +    GA++    + G + RA E+++ 
Sbjct: 410 YNCLIEGYYKVQNMEKAYELLIEIKKE--NLTANAYMCGAIVNGLCHCGDLTRANELFQE 467

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +  + +K    +YT  +    + G +E A  +   M  +G+ PD    + +I     AGK
Sbjct: 468 MISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGK 527

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLM--------------------------------- 346
           +E     L E   +G+   + +Y + +                                 
Sbjct: 528 MEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTD 587

Query: 347 ---GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
              G C +  N  KA   +  M    + P V T + LI  L    +L + M V S++   
Sbjct: 588 LIDGYCKDG-NTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDK 646

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 461
           GL P+  TY+ L+    ++ D++    L     + G+ PN+V +  +I G+C      KA
Sbjct: 647 GLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKA 706

Query: 462 RTL 464
           R L
Sbjct: 707 REL 709



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 188/410 (45%), Gaps = 15/410 (3%)

Query: 71  CKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           CK     K AF  F+ + +    P + T ++L+   + +   + A  V   + + GL  D
Sbjct: 593 CKDGNTTK-AFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPD 651

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              YT+LI+   K G + A FE+  +M   GI PN+ TY ALI+G  K G++AKA   + 
Sbjct: 652 VFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFD 711

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            +  K +  + V ++ +I    +S  +  AF +   M  ++  V PD     AL+  C  
Sbjct: 712 GIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGM--KLVGVPPDSFVYCALIDGCCK 769

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           AG  ++A  ++  + +  I  TP  +   I+   + G    A  + +DM    + P+ V 
Sbjct: 770 AGNTEKALSLFLGMVEEGIASTP-AFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVT 828

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            + LI++    G ++ A ++  E + + +   +++Y+SL+   +      +   L++ M 
Sbjct: 829 YTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMV 888

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPNTITYSILLVACERKDD 424
           +  +KP     + ++ A        K ++++ DM S G  +C N   Y+IL+ A  + ++
Sbjct: 889 ARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKN--LYTILIDALCKHNN 946

Query: 425 VEVGLMLLSQAKEDGVIPNLV---MFKCIIGMCSRRYEKARTLNEHVLSF 471
           +   L +L + ++ G   +L       C      R  E  R L   V SF
Sbjct: 947 LSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESMVRSF 996



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 179/379 (47%), Gaps = 10/379 (2%)

Query: 28  QLHSY--NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
           Q HS   + L + G++ E + +  ++  KGL+     Y +   N+CK +  +K AF    
Sbjct: 618 QTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCK-EGDLKAAFELHD 676

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K   NP + T+N L++      +   A ++   + E GL  +   Y+T+I    KS 
Sbjct: 677 DMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSA 736

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +   F++FH M   G+ P+   Y ALIDGC KAG   KA   +  M  + +      FN
Sbjct: 737 NLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFN 795

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           ALI    + G +  A+ ++ +M  + H + P+H+T   L++     G +  A +++  + 
Sbjct: 796 ALIDGFFKLGKLIEAYQLVEDM-VDNH-ITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQ 853

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K N+      YT  ++  ++ G      S++D+M  +G+ PD++  S ++D     G   
Sbjct: 854 KRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWI 913

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A +++ +  ++G++V    Y+ L+ A     N  + L++ + ++    K +++T   L+
Sbjct: 914 KALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLV 973

Query: 382 TALCDGDQLPKTMEVLSDM 400
                  +  + + VL  M
Sbjct: 974 CCFHRAGRTDEALRVLESM 992



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 159/358 (44%), Gaps = 4/358 (1%)

Query: 90  PTLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+ N++ + C   K  EG   VL  ++E G   +   Y+ +I    ++G VD   E
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGK-HVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALE 288

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M N G+ P+ + Y  LIDG  +  +  +       M +  +KPD V + ALI    
Sbjct: 289 LKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFV 348

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +  AF V  EM A    +  +  T  AL+      G +++A +++  +    IK  
Sbjct: 349 KQSDIGGAFQVKEEMFA--RKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPD 406

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            + Y   I    +  + E A  +  ++ K+ +  +     A+++   H G +  A E+ Q
Sbjct: 407 IQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQ 466

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  + G+   I+ Y++++        +++A+++   MK   L P V   N +I   C   
Sbjct: 467 EMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAG 526

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
           ++ +    L +M + GL PN  TY   +    R  +++       +  + G+ PN V+
Sbjct: 527 KMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVI 584



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 144/330 (43%), Gaps = 3/330 (0%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   YT LI    + GKV+    V  +M   G  PN+ TY  +I G  +AG V +A    
Sbjct: 231 DVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELK 290

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M +K + PD  ++  LI    +         +L EM      + PDH+   AL+    
Sbjct: 291 RSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEM--YTMGLKPDHVAYTALINGFV 348

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
               +  A +V + +    IK     Y   I+   + GD E A  ++ +MT  G+ PD  
Sbjct: 349 KQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQ 408

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + LI+       +E A+E+L E K + ++       +++    +  +  +A EL++ M
Sbjct: 409 TYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEM 468

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
            S  LKP +     ++  L    +  + +++L  MK  GL P+   Y+ +++   +   +
Sbjct: 469 ISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKM 528

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           E G   L +    G+ PN+  +   I G C
Sbjct: 529 EEGKSYLVEMIAKGLKPNVYTYGAFIHGYC 558



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 8/161 (4%)

Query: 272 YTIAINCCS-------QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           + + + CC+       +    E    VY  M    ++PD    + LI+     GKVE   
Sbjct: 194 FIVGLACCNSLSKDLLKGNRVELFWKVYKGMLG-AIVPDVYTYTNLINAYCRVGKVEEGK 252

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +L + + +G    +++YS ++     A +  +ALEL   M +  L P       LI   
Sbjct: 253 HVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGF 312

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           C   +  +   +L +M ++GL P+ + Y+ L+    ++ D+
Sbjct: 313 CRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDI 353


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 180/420 (42%), Gaps = 37/420 (8%)

Query: 91  TLSTFNMLMSV---CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           TL  +NMLM     C +       F+ L+   E GL      Y  LI   +K GK+D   
Sbjct: 331 TLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKAL 390

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++ +EM + GI+ N  TY  +IDG  + G  A AF  +  M +  +KPD + +N L+ A 
Sbjct: 391 QISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAF 450

Query: 208 GQSGAVDRAFDVLAEMNAEVHP---------VD------------------------PDH 234
            ++G ++RA ++LA M +   P         +D                        P  
Sbjct: 451 CKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSA 510

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
            T   +M   A AGQ+DRA  +   +    +      YT  I   +  GD   A   ++ 
Sbjct: 511 ATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNR 570

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           + + G+ PD +  ++L+     AG++++   I  E    G+ +    Y+ L+   +   +
Sbjct: 571 IKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGD 630

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             +A ++ + M+   L P + +  + I A C    + K  E +  MK  G+ PN   Y+ 
Sbjct: 631 MWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTT 690

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR-TLNEHVLSFNS 473
           L+         E  L+   + K  G+IP+  ++ CI+     R   AR T+ + VL   S
Sbjct: 691 LIHGWASASYPEKALICYDEMKSAGMIPDKPLYHCIMTSLLSRAAVARETVFDGVLRVTS 750



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/508 (23%), Positives = 221/508 (43%), Gaps = 38/508 (7%)

Query: 22  AHDVSEQLHSYNRLIRQGRISE----CIDLLEDMERKGLLDMDKVY------HARFFNVC 71
           A  +   +HSY  LI    +++     I  +E+ME +G+      Y      + R  +V 
Sbjct: 220 AAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVE 279

Query: 72  KS----QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
            +    Q+A+ E +    ++ N      N++ + C +  + E A  ++  ++E GL+A  
Sbjct: 280 AAERWFQRALSENWHHNDVIYN------NIIHAYCKAG-NMERAEAIMTAMEEQGLEATL 332

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEM---VNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
            LY  L+        VD    VF  +      G+ P V +YG LI+  +K G++ KA   
Sbjct: 333 GLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQI 392

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
              M  + +K +R  ++ +I    Q G    AF V  +M+     + PD IT   LM A 
Sbjct: 393 SNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNA--GIKPDGITYNILMNAF 450

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
              GQ++RA E+   +   +   T   YTI I+   + GD   A     DM   G  P  
Sbjct: 451 CKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSA 510

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
              + ++     AG+++ A  I+ E    G+     SY++L+   +   +   A + +  
Sbjct: 511 ATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNR 570

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           +K + LKP V    +L+ A C   ++  T+ + ++M + G+  N   Y+ILL    ++ D
Sbjct: 571 IKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGD 630

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR-TLNEHVLSFNSGRPQIE---- 479
           +     ++ + + +G+ P++  +   I  C +  +  + T     +     +P ++    
Sbjct: 631 MWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTT 690

Query: 480 --NKWTSL-----ALMVYREAIVAGTIP 500
             + W S      AL+ Y E   AG IP
Sbjct: 691 LIHGWASASYPEKALICYDEMKSAGMIP 718



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/417 (20%), Positives = 175/417 (41%), Gaps = 36/417 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           FK +  P      +L++      D   A      ++ AG++ +   YT LI   A +  +
Sbjct: 184 FKRIKKPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDL 243

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                   EM   G+ PN  TY  +I G  + G V  A   +    S+N   + V++N +
Sbjct: 244 RGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNI 303

Query: 204 ITACGQSGAVDRAFDVLAEMNAE----------------VH------------------- 228
           I A  ++G ++RA  ++  M  +                VH                   
Sbjct: 304 IHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTE 363

Query: 229 -PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + P  ++ G L+   +  G++D+A ++   +    IK   + Y++ I+   Q GD   
Sbjct: 364 TGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTAN 423

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A SV++DM+  G+ PD +  + L++     G++  A E+L   ++      + +Y+ ++ 
Sbjct: 424 AFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIID 483

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                 + + A E    MK    +P+ +T N ++  L    Q+ +   ++ +M   G+ P
Sbjct: 484 GFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHP 543

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
           N  +Y+ L+       D+ +     ++ KE G+ P+++ +  ++  C +      TL
Sbjct: 544 NERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTL 600



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           F + + D    A KV  AF+ +++ K +  ++ +++Y    G   +A+        +E M
Sbjct: 166 FRNLVEDHPKDARKVVDAFKRIKKPKQRDHTL-LVNYYGKRGDKHSAR------AAFESM 218

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           ++  ++P V +   LI A      L   +  + +M++ G+ PN  TYS+++    R  DV
Sbjct: 219 RAAGIEPNVHSYTNLIHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDV 278

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII 451
           E       +A  +    N V++  II
Sbjct: 279 EAAERWFQRALSENWHHNDVIYNNII 304



 Score = 38.5 bits (88), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + ++   ++ C  + D   A + +  +++ G++ + + YTTLI   A +   +     
Sbjct: 648 PDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALIC 707

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR---VVFNA---- 202
           + EM +AG+ P+   Y  ++        VA+     G++R  +   D+   V F      
Sbjct: 708 YDEMKSAGMIPDKPLYHCIMTSLLSRAAVARETVFDGVLRVTSEMVDQGICVDFATAKHW 767

Query: 203 ---LITACGQSGAVDRAFD 218
              LI A  QSG + RA +
Sbjct: 768 QRFLIKAERQSGDLTRAVE 786


>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
          Length = 1131

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 141/288 (48%), Gaps = 3/288 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +T++I+ C     +     +  EM + GIE NVHT+ AL++ C K GQ   A   Y  M+
Sbjct: 294 FTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQ 353

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           +     + V +N LI   G+SG  + A  VL +M  E   + P   T   LM AC  + Q
Sbjct: 354 AAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRER--IQPVTRTFNTLMIACNTSNQ 411

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
              A  VY+ +   +       Y   I+  S+ GD     +V+ +M +KG     +  S+
Sbjct: 412 WQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSS 471

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     AG+ + A ++ +E + +G    +ISY+SL+ AC+    W+KA E++E M+   
Sbjct: 472 LISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQG 531

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILL 416
            +P V +  ALI A   G Q  + +    +M     C P++I Y+ ++
Sbjct: 532 CRPDVVSYTALIQAYERGGQWRRALAAFEEMIRARPCAPDSIVYNTII 579



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 141/279 (50%), Gaps = 4/279 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           TF  ++S C + +D   A  +   +++ G++ +   ++ L+  C K G+     +V+ +M
Sbjct: 293 TFTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDM 352

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
             AG   NV TY  LID   K+GQ  +A      M+ + ++P    FN L+ AC  S   
Sbjct: 353 QAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQW 412

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A  V  +M A  HP  P+  T  AL+ A +  G + +   V+K + +   + +   Y+
Sbjct: 413 QEALRVYEQMAASSHP--PNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYS 470

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+ C + G+W+ A  ++++M  +G +P+ +  ++LI       + E A E+ ++ + Q
Sbjct: 471 SLISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQ 530

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
           G    ++SY++L+ A      W++AL  +E M  I+ +P
Sbjct: 531 GCRPDVVSYTALIQAYERGGQWRRALAAFEEM--IRARP 567



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 139/273 (50%), Gaps = 8/273 (2%)

Query: 203 LITACGQSGAVDRA---FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVY 257
           +I   G+ G   R    FD+L  +     P+ P  D  T  +++  C     + RA  + 
Sbjct: 256 VIKDLGKGGLPHRGAQLFDLLRRLGPG-SPLAPLLDEFTFTSMISNCVAQQDLGRAMALA 314

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + +    I+     ++  +N C + G ++ A  VY DM   G   + V  + LID  G +
Sbjct: 315 EEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYGKS 374

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+ E A  +L++ K + I     ++++LM AC+ +  WQ+AL +YE M +    P  +T 
Sbjct: 375 GQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTTTY 434

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           NALI+A   G  LPK + V  +M   G   + ITYS L+ ACE+  + ++ L L  + + 
Sbjct: 435 NALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLALQLFEEMRG 494

Query: 438 DGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468
           +G +PN++ +  +I  C++  ++EKA  + E +
Sbjct: 495 EGCVPNVISYNSLITACAQGAQWEKAAEVFEQM 527



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 130/289 (44%), Gaps = 3/289 (1%)

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           T+ ++I  C     + +A      MR + ++ +   F+AL+  C + G    A DV  +M
Sbjct: 293 TFTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDM 352

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
            A   P +   +T   L+     +GQ + A  V + + +  I+     +   +  C+ + 
Sbjct: 353 QAAGCPAN--VVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSN 410

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
            W+ A  VY+ M      P+    +ALI      G +     + +E   +G    +I+YS
Sbjct: 411 QWQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYS 470

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           SL+ AC  A  W+ AL+L+E M+     P V + N+LITA   G Q  K  EV   M+  
Sbjct: 471 SLISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQ 530

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQA-KEDGVIPNLVMFKCII 451
           G  P+ ++Y+ L+ A ER       L    +  +     P+ +++  II
Sbjct: 531 GCRPDVVSYTALIQAYERGGQWRRALAAFEEMIRARPCAPDSIVYNTII 579



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 131/289 (45%), Gaps = 15/289 (5%)

Query: 25  VSEQLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +   +H+++ L    I+ G+    +D+  DM+  G    + V +    +V       +EA
Sbjct: 322 IERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGC-PANVVTYNTLIDVYGKSGQWEEA 380

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
               + +      P   TFN LM  C +S   + A +V   +  +    +   Y  LI+ 
Sbjct: 381 LAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTTTYNALISA 440

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
            +K G +  +  VF EMV  G E +V TY +LI  C KAG+   A   +  MR +   P+
Sbjct: 441 HSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLALQLFEEMRGEGCVPN 500

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            + +N+LITAC Q    ++A +V  +M  +     PD ++  AL++A    GQ  RA   
Sbjct: 501 VISYNSLITACAQGAQWEKAAEVFEQMQRQG--CRPDVVSYTALIQAYERGGQWRRALAA 558

Query: 257 Y-KMIHKYNIKGTPEVYTIAINCCSQTG-DW--EFACSVYDDMTKKGVI 301
           + +MI          VY   I+   +TG  W    A S++   + +G+I
Sbjct: 559 FEEMIRARPCAPDSIVYNTIIDVLWETGVGWAQRKAASLFRQASAEGLI 607



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 96/235 (40%), Gaps = 29/235 (12%)

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            +++S++  C   ++  +A+ L E M+   ++  V T +AL+       Q    ++V  D
Sbjct: 292 FTFTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRD 351

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           M++ G   N +TY+ L+    +    E  L +L Q K + + P                 
Sbjct: 352 MQAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQP----------------- 394

Query: 460 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQ----LP 515
             RT N  +++ N+      N+W   AL VY +   +   P     + ++        LP
Sbjct: 395 VTRTFNTLMIACNT-----SNQWQE-ALRVYEQMAASSHPPNTTTYNALISAHSKGGDLP 448

Query: 516 YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
               + + +V+  G     +  S+L S  +  GE+   A  L EE    G VP V
Sbjct: 449 KVLAVFKEMVQK-GCERSVITYSSLISACEKAGEWK-LALQLFEEMRGEGCVPNV 501


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 161/331 (48%), Gaps = 2/331 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++  L++    + +++   ++LR ++   +K D  +Y T+I +  K+  +    +++ EM
Sbjct: 170 SYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEM 229

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +  GI PNV TY AL+ G    G + +AF     M+ KN+ PD   FN LI A G+ G +
Sbjct: 230 IVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKM 289

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A  VLA M      + PD +T  +L+       +V  A+ V+  + +  +      YT
Sbjct: 290 KAAKIVLAVMMKAC--IKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYT 347

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+   +    + A S++++M  K +IPD V  ++LID       +E A  + ++ K Q
Sbjct: 348 TMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQ 407

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI   + SY+ L+ A       + A E ++ +        V T N +I  LC  D   + 
Sbjct: 408 GIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEA 467

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M++ S M+  G  P+ IT+  ++ A   KD+
Sbjct: 468 MDLKSKMEGKGCMPDAITFKTIICALFEKDE 498



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 189/459 (41%), Gaps = 39/459 (8%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
            H V   +  YN +I    +   + +  DL  +M  KG+      Y+A  +  C     +
Sbjct: 196 GHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFC-IMGHL 254

Query: 78  KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           KEAF     +     NP + TFN L+         + A  VL ++ +A +K D   Y +L
Sbjct: 255 KEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSL 314

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I       KV     VF+ M  +G+ PNV TY  +IDG  K   V +A   +  M+ KN+
Sbjct: 315 IDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNM 374

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            PD V + +LI    ++  ++RA  +  +M  +   + PD  +   L+ A    G+++ A
Sbjct: 375 IPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQ--GIQPDVYSYTILLDALCKGGRLENA 432

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI-- 311
           +E ++ +         + Y + IN   +   +  A  +   M  KG +PD +    +I  
Sbjct: 433 KEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICA 492

Query: 312 ----DFAGHAGKV--EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
               D    A K+  E     LQEA+   +    I  + +  AC                
Sbjct: 493 LFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKAC---------------- 536

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
               +KP V T   L+      ++L     V   M  +G+ PN   Y+I++    +K  V
Sbjct: 537 ----IKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTV 592

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
           +  + L  + K   + PN+V +  +I    + +   R +
Sbjct: 593 DEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAI 631



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 179/423 (42%), Gaps = 30/423 (7%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI       ++     +   M + G+    + Y      +CK +K + EA   F+ 
Sbjct: 310 TYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCK-EKMVDEAMSLFEE 368

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+  L+     +   E A  + + ++E G++ D   YT L+    K G+
Sbjct: 369 MKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGR 428

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           ++   E F  ++  G   NV TY  +I+G  KA    +A      M  K   PD + F  
Sbjct: 429 LENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKT 488

Query: 203 LITACGQSGAVDRAFDVLAEMNA----EVHPV-----------------DPDHITIGALM 241
           +I A  +    D+A  +L EM A    E   V                  PD +T G LM
Sbjct: 489 IICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLM 548

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
                  ++  A+ V+  + +  +    + YTI I+   +    + A S++++M  K + 
Sbjct: 549 DGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMF 608

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P+ V  ++LID       +E A  +L+E K  GI   + SY+ L+     +   + A E+
Sbjct: 609 PNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEI 668

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           ++ +        V    A+I  LC      + +++   M+  G  P+ +T+ I++ A   
Sbjct: 669 FQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFE 728

Query: 422 KDD 424
           KD+
Sbjct: 729 KDE 731



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 160/390 (41%), Gaps = 4/390 (1%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R   + P P    FN ++S   ++K       + +  +  G   D      L+       
Sbjct: 53  RMLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLT 112

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +   F V   ++  G  PN  T   LI G    G++ KA   +  + ++  + ++V + 
Sbjct: 113 HITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYR 172

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    ++G       +L ++  E H V PD +    ++ +      +  A ++Y  + 
Sbjct: 173 TLINGLCKTGETKAVARLLRKL--EGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMI 230

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              I      Y   +      G  + A S+ ++M  K + PD    + LID  G  GK++
Sbjct: 231 VKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMK 290

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           AA  +L       I   +++Y+SL+         + A  ++  M    + P V T   +I
Sbjct: 291 AAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMI 350

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC    + + M +  +MK   + P+ +TY+ L+    +   +E  + L  + KE G+ 
Sbjct: 351 DGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQ 410

Query: 442 PNLVMFKCII-GMCS-RRYEKARTLNEHVL 469
           P++  +  ++  +C   R E A+   + +L
Sbjct: 411 PDVYSYTILLDALCKGGRLENAKEFFQRLL 440


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 173/362 (47%), Gaps = 2/362 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +  +M+  +    +E    +LR++++   K D + Y+ +I    K   +DA   +
Sbjct: 166 PNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINL 225

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            +EM    I PN+ TY +LIDG  K GQ  K       M + N+ P+   F+ LI    +
Sbjct: 226 LNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCK 285

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V+ A +V+  M  +   V+PD IT  A+M      GQVDRAR V+ ++    IK   
Sbjct: 286 EGKVEDADEVMRHMIEK--GVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNI 343

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+I IN   +  +   A  ++ ++++KG+ PD V  S ++      G++  A +I  E
Sbjct: 344 FSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDE 403

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G +  I  +S+L+         ++A+ L+  ++  +    +S    +I  LC  D+
Sbjct: 404 MLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDR 463

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +   +   + S+GL P+  TY++++    R+   +    +L + +++G   N + +  
Sbjct: 464 VREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNV 523

Query: 450 II 451
           I+
Sbjct: 524 IM 525



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/460 (24%), Positives = 207/460 (45%), Gaps = 23/460 (5%)

Query: 18  HANYAHDVS---EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           H N+  +VS   + +  ++R++R   +   ID  +    K +++M            K  
Sbjct: 33  HINFDKEVSCLDDAVSLFHRMVRMKPLPSVIDFSKLF--KTMINM------------KHY 78

Query: 75  KAIKEAFRFFKLVPNP-TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            A+   FR  +++  P + S  N++ +        + AF VL +  + G+  +   + TL
Sbjct: 79  SAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTL 138

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           +       KV     +F ++V   I EPN   YG +++G +K G   K      IM   N
Sbjct: 139 LGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGN 198

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
            KPD   ++ +I A  +   +D A ++L EM  +  P  P+  T  +L+      GQ ++
Sbjct: 199 TKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIP--PNIFTYNSLIDGLCKLGQWEK 256

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
            + +   +   NI      ++I I+   + G  E A  V   M +KGV PD +  SA++D
Sbjct: 257 VKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMD 316

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G+V+ A  +    +++GI   I SYS L+      KN  KA++L+  +    LKP
Sbjct: 317 GYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKP 376

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T + ++  L +  ++    ++  +M  +G  P+   +S LL    +   VE  ++L 
Sbjct: 377 DTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLF 436

Query: 433 SQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLS 470
           S+ + +    N+  +  +I G+C   R  +A  + E + S
Sbjct: 437 SKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPS 476



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 166/386 (43%), Gaps = 8/386 (2%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +  N   DV       + L +   +   I+LL +M++K +      Y++    +CK  + 
Sbjct: 195 EQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQW 254

Query: 77  IKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            K      ++V    NP + TF++L+         E A +V+R + E G++ D   Y+ +
Sbjct: 255 EKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAI 314

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +      G+VD    VF+ + + GI+PN+ +Y  LI+G  K   +AKA   +G +  K +
Sbjct: 315 MDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGL 374

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KPD V ++ ++    + G +  A  +  EM   V P  PD      L+      G V+ A
Sbjct: 375 KPDTVTYSTILHGLIEVGRIGDAKKIFDEM-LRVGPT-PDICLHSTLLFGYFKYGLVEEA 432

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             ++  + +         YT+ IN   +      A ++++ +   G+IPD    + +I  
Sbjct: 433 MLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITG 492

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G  +    IL++ ++ G     I+Y+ +M     +    + +   + M        
Sbjct: 493 FCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFD 552

Query: 374 VSTMNALITALCDGDQLPKTMEVLSD 399
            +T   LI  L +    P  ++++ D
Sbjct: 553 ATTTGVLINVLKEN---PSIVDMIPD 575


>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
 gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
           Japonica Group]
 gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
          Length = 551

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 181/385 (47%), Gaps = 9/385 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + GR++    LL++M R G+  ++ + +    +    +K         K++ N    PT+
Sbjct: 155 KSGRVAHARQLLDEMPRHGV-KVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTV 213

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+ +L+   ++++D      V   ++   L  D   Y+++I    ++G V    EVF E
Sbjct: 214 GTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRRASEVFDE 273

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            V  GIEPN HTYGALI+G  K GQ+  A      M+ + V  +++VFN +I    +   
Sbjct: 274 CVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMIDGYCRKNM 333

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           VD+A ++  +M  E   ++ D  T   L      A ++D A+ + +++ +  ++     Y
Sbjct: 334 VDKALEI--KMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRPNHVSY 391

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  I+     GD   A  ++ +M   G  P  V  + ++D     G +  A     E + 
Sbjct: 392 TTLISIHCNEGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEK 451

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +G+   I SY++L+ G C N K    AL L+E MK    KP +    ALI+ L    +  
Sbjct: 452 KGLVPDIYSYAALVHGHCVNGK-VDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSE 510

Query: 392 KTMEVLSDMKSLGLCPNTITYSILL 416
           +  ++  +M   GL P+   YS L+
Sbjct: 511 EAFQLYDNMLGDGLTPDDALYSALV 535



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 171/425 (40%), Gaps = 49/425 (11%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A Q+L  +   G+K +   Y +L+    +    D + E+   M N GIEP V TY  L+D
Sbjct: 162 ARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENEGIEPTVGTYTILVD 221

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G + A  + K    +  M+SKN+  D   ++++I A                        
Sbjct: 222 GLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAY----------------------- 258

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
                           AG V RA EV+       I+     Y   IN   + G  E A  
Sbjct: 259 --------------CRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEM 304

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +  DM  +GV  +++  + +ID       V+ A EI    +  GI + + +Y++L     
Sbjct: 305 LVTDMQVRGVGINQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLR 364

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A    +A  L   M    ++P   +   LI+  C+   + +   +  +M   G  P+ +
Sbjct: 365 RANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFREMAGNGAEPSLV 424

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS--------RRYE-- 459
           TY++++    +K  +       ++ ++ G++P++  +  ++ G C         R +E  
Sbjct: 425 TYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGKVDVALRLFEEM 484

Query: 460 KARTLNEHVLSFNSGRPQIENKWTS-LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 518
           K R    +++++ +    +  +  S  A  +Y   +  G  P   + S ++G L      
Sbjct: 485 KQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLTPDDALYSALVGSLHTDKKQ 544

Query: 519 DIRER 523
           +++ R
Sbjct: 545 NVKPR 549



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 136/285 (47%), Gaps = 4/285 (1%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           ++DG  K+G+VA A      M    VK + + +N+L+ A  +    DR  ++L  M  E 
Sbjct: 149 VVDGYCKSGRVAHARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVAEMLKVMENE- 207

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             ++P   T   L+   + A  + +   V++ +   N+ G    Y+  IN   + G+   
Sbjct: 208 -GIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINAYCRAGNVRR 266

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  V+D+    G+ P+E    ALI+     G++EAA  ++ + + +G+ +  I +++++ 
Sbjct: 267 ASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGINQIVFNTMID 326

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                    KALE+   M+ + ++  V T N L   L   +++ +   +L  M   G+ P
Sbjct: 327 GYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNLLRIMIEKGVRP 386

Query: 408 NTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           N ++Y+ L+ + C   D VE    L  +   +G  P+LV +  ++
Sbjct: 387 NHVSYTTLISIHCNEGDMVE-ARRLFREMAGNGAEPSLVTYNVMM 430



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 112/262 (42%), Gaps = 5/262 (1%)

Query: 195 PDRVV-FNALITACG--QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           PD V   +A +   G  +SG V  A  +L EM    H V  + +   +L+ A       D
Sbjct: 138 PDSVTPLSASVVVDGYCKSGRVAHARQLLDEM--PRHGVKVNALCYNSLLDAYTREKDDD 195

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           R  E+ K++    I+ T   YTI ++  S   D     +V+++M  K +  D  F S++I
Sbjct: 196 RVAEMLKVMENEGIEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVI 255

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           +    AG V  A E+  E    GI     +Y +L+         + A  L   M+   + 
Sbjct: 256 NAYCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVG 315

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
                 N +I   C  + + K +E+   M+ +G+  +  TY+ L     R + ++    L
Sbjct: 316 INQIVFNTMIDGYCRKNMVDKALEIKMIMEKMGIELDVYTYNTLACGLRRANRMDEAKNL 375

Query: 432 LSQAKEDGVIPNLVMFKCIIGM 453
           L    E GV PN V +  +I +
Sbjct: 376 LRIMIEKGVRPNHVSYTTLISI 397


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 204/438 (46%), Gaps = 9/438 (2%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT 91
           +  L+  G + E   L + M   GLL      +    ++ +    IK A + F   P   
Sbjct: 189 FQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVG 248

Query: 92  L----STFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +    +++N++  S+C   +  E A Q+L  ++  G   D   Y+T+I    + G++  +
Sbjct: 249 VCWNTASYNIITHSLCQLGRVVE-AHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRV 307

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  EM   G++PN +TY  +I    K G+VA+A      M S+ + PD V++  LI  
Sbjct: 308 LKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDG 367

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G V  A+ +  EM      + PD IT  A++      G+V  A +++  +    ++
Sbjct: 368 FCKLGNVSSAYRLFDEMQK--RKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLE 425

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                YT  I+   + G  + A S+++ M + G+ P+ V  +AL D     G+V+ A E+
Sbjct: 426 PDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANEL 485

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L E   +G+ + I +Y+SL+     A N  +A++L + M+     P   T   L+ A C 
Sbjct: 486 LHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCK 545

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             ++ +  E+L  M    L P  +T+++L+        +E G  LL    E G++PN   
Sbjct: 546 SREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATT 605

Query: 447 FKCIIGM-CSRRYEKART 463
           +  +I   C R   +A T
Sbjct: 606 YNSLIKQYCIRNNMRATT 623



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 192/397 (48%), Gaps = 17/397 (4%)

Query: 31  SYN----RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN----VCKSQKAIK--EA 80
           SYN     L + GR+ E   LL  ME +G +  D + ++   N    V + Q+ +K  E 
Sbjct: 255 SYNIITHSLCQLGRVVEAHQLLLQMELRGCIP-DVISYSTVINGYCQVGELQRVLKLIEE 313

Query: 81  FRFFKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            +   L PNP   T+N +++ +C + K +E A +VLR +   G+  D  +YTTLI    K
Sbjct: 314 MQIKGLKPNPY--TYNGVILLLCKTGKVAE-AERVLREMISEGIAPDGVIYTTLIDGFCK 370

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G V + + +F EM    I P+  TY A+I G  + G+V +A   +  M  K ++PD V 
Sbjct: 371 LGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVT 430

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           + ALI    + G +  AF +  +M      + P+ +T  AL       G+VD A E+   
Sbjct: 431 YTALIDGYCKEGKMKEAFSLHNQMLQ--MGLTPNIVTYTALADGLCKCGEVDTANELLHE 488

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +  ++     Y   +N   + G+ + A  +  DM   G  PD V  + L+D    + +
Sbjct: 489 MCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSRE 548

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +  A E+L++  ++ +   +++++ LM     +   +   +L + M    + P  +T N+
Sbjct: 549 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 608

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           LI   C  + +  T E+   M + G+ P+  TY+IL+
Sbjct: 609 LIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILI 645



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 193/453 (42%), Gaps = 52/453 (11%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPNPTL 92
           G +   + L+E+M+ KGL      Y+     +CK+ K + EA R  +      + P+  +
Sbjct: 302 GELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGK-VAEAERVLREMISEGIAPDGVI 360

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T  ++   C     S  A+++   +Q+  +  D   YT +I    ++G+V    ++FHE
Sbjct: 361 YT-TLIDGFCKLGNVS-SAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHE 418

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV   +EP+  TY ALIDG  K G++ +AF  +  M    + P+ V + AL     + G 
Sbjct: 419 MVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGE 478

Query: 213 VDRAFDVLAEM---------------------------------NAEVHPVDPDHITIGA 239
           VD A ++L EM                                 + EV    PD +T   
Sbjct: 479 VDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTT 538

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           LM A   + ++ RA E+ + +    ++ T   + + +N    +G  E    +   M +KG
Sbjct: 539 LMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKG 598

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           ++P+    ++LI        + A  EI +    +G+     +Y+ L+     A+N ++A 
Sbjct: 599 IMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAW 658

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            L+  M       TVS+ NALI       +  +  E+   M+  GL  +   Y+I     
Sbjct: 659 FLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADIN 718

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             +  +E+ L L  +A E          KC++G
Sbjct: 719 YDEGKMELTLELCDEAIE----------KCLVG 741



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/282 (21%), Positives = 114/282 (40%), Gaps = 44/282 (15%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +++YN L+    + G I + + L++DME  G       Y       CKS++ ++      
Sbjct: 498 IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLR 557

Query: 85  KLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +++     PT+ TFN+LM+    S   E   ++L+ + E G+  +   Y +LI       
Sbjct: 558 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 617

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            + A  E++  M   G+ P+ +TY  LI G  KA  + +A+  +  M  K        FN
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG-------FN 670

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
             ++                              +  AL+K      +   ARE+++ + 
Sbjct: 671 LTVS------------------------------SYNALIKGFYKRKKFLEARELFEQMR 700

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
           +  +    E+Y I  +     G  E    + D+  +K ++ D
Sbjct: 701 REGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGD 742


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 179/384 (46%), Gaps = 9/384 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L+S        + A Q+L  ++E G++   K+YT LIT   K   V     +
Sbjct: 228 PDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSL 287

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM +    P+V TY  LI G  KAG++ +A+  +  M+ +  +PD VV N +I   G+
Sbjct: 288 FEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGK 347

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV---YKMIHKYNIK 266
           +G +D A  +  EM        P  +T   ++KA   +    RA EV   ++ + +  I 
Sbjct: 348 AGRLDDAMKLFQEMG--TLRCIPSVVTYNTIIKALFESK--SRASEVPSWFERMKESGIS 403

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            +   Y+I I+   +T   E A  + ++M +KG  P      +LID  G A + + A E+
Sbjct: 404 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            QE K    S     Y+ ++     A     A+ +++ M  +   P V   NAL++ L  
Sbjct: 464 FQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 523

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L + +  +  M+  G  P+  +Y+I+L    +       + +LS  K+  V P++V 
Sbjct: 524 TGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVS 583

Query: 447 FKCIIGMCSR--RYEKARTLNEHV 468
           +  ++G  S    +E+A  L E +
Sbjct: 584 YNTVLGALSHAGMFEEAAKLMEEM 607



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 178/409 (43%), Gaps = 16/409 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
           +Y+ LI    + GR      LL +M+  G+    K+Y      FF +     A+      
Sbjct: 232 TYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEM 291

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P + T+  L+     +   + A+     +Q  G + D  +   +I    K+G++
Sbjct: 292 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRL 351

Query: 144 DAMFEVFHEMVNAGIEPNVHTYG----ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           D   ++F EM      P+V TY     AL +  ++A +V   F     M+   + P    
Sbjct: 352 DDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFER---MKESGISPSSFT 408

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           ++ LI    ++  +++A  +L EM+ +  P  P      +L+ A   A + D A E+++ 
Sbjct: 409 YSILIDGFCKTNRMEKAMMLLEEMDEKGFP--PCPAAYCSLIDALGKAKRYDLACELFQE 466

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +     +  VY + I    + G  + A +++D+M K G  PD    +AL+      G 
Sbjct: 467 LKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGM 526

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A   ++  +  G    I SY+ ++   +      +A+E+  +MK   ++P V + N 
Sbjct: 527 LDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNT 586

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
           ++ AL       +  +++ +M +LG   + ITYS +L A  + D    G
Sbjct: 587 VLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIGKVDHEYTG 635



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 152/379 (40%), Gaps = 45/379 (11%)

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
           AE   EV  +  DH  +  +MK   + G   + +       + N +     Y   I C  
Sbjct: 77  AEKALEVLMLRVDHWLVREVMKT--DIGVNVKMQFFRWAAKRRNYEHDTSTYMALIRCLE 134

Query: 281 QTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
               +     +  +M +     V P E  LS ++   G+A  V  A  I  + K +    
Sbjct: 135 VVEQYGEMWKMIQEMVRNPICVVTPTE--LSEVVRMLGNAKMVSKAIAIFYQIKTRKCQP 192

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEV 396
              +Y+S++    +   + K  ELY  M +     P   T +ALI+A C   +     ++
Sbjct: 193 TAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQL 252

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L++MK  G+ P T  Y++L+    + DDV   L L  + +     P++  +  +I    R
Sbjct: 253 LNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELI----R 308

Query: 457 RYEKARTLNE-----HVLSFNSGRPQ--IENKWTSL---------ALMVYREAIVAGTIP 500
              KA  ++E     + +     RP   + N   +          A+ +++E      IP
Sbjct: 309 GLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIP 368

Query: 501 TVEVVSKVLGCLQLPYNADIR--------ERLVENLGVSADALKRSNLCSLIDGFGEYD- 551
           +V   + ++  L   + +  R        ER+ E+ G+S  +   S    LIDGF + + 
Sbjct: 369 SVVTYNTIIKAL---FESKSRASEVPSWFERMKES-GISPSSFTYS---ILIDGFCKTNR 421

Query: 552 -PRAFSLLEEAASFGIVPC 569
             +A  LLEE    G  PC
Sbjct: 422 MEKAMMLLEEMDEKGFPPC 440


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 126/532 (23%), Positives = 229/532 (43%), Gaps = 57/532 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+  + + L+   A ++  +  F V+ LV + G   +  +   ++    ++G V     +
Sbjct: 107 PSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGL 166

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM    + P++ +Y  LI+G  KA ++ +A G    M +    P+ V    L+    +
Sbjct: 167 IREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCK 226

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D A ++L  M  +    D D +  G L+    N G +DR +E++  +    I    
Sbjct: 227 DGRMDEAMELLEAMKKK--GFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANV 284

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID------FAGHA------ 317
             Y+  ++   + G W+ A +V + M + G+ PD V  + LID       A HA      
Sbjct: 285 VTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNL 344

Query: 318 -----------------------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
                                  G V  AF+IL+    +G    +++Y++LM    +   
Sbjct: 345 MVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGK 404

Query: 355 WQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
             +AL+L+  M   +  L+P V T N LI  LC   +L K +++   M   G C N +TY
Sbjct: 405 VDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTY 464

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR--------YEKART 463
           ++LL  C +   ++  + L  Q  + G +PN   +  +I G C  R        + + RT
Sbjct: 465 NMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRT 524

Query: 464 --LNEHVLSFNSGRPQIENKWT-SLALMVYREAIVAGTIPTV----EVVSKVLGCLQLPY 516
             LN  +  +N+    +  + +   A  +++E   A   P +     ++   L      +
Sbjct: 525 HGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQF 584

Query: 517 NADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
             +++ ++VE +G+  DAL  S L + +   GE D  A S LE   + G  P
Sbjct: 585 VKELQMKMVE-MGLRPDALTFSTLINRLSKLGELD-EAKSALERMVASGFTP 634



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 104/482 (21%), Positives = 199/482 (41%), Gaps = 28/482 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L + GR+ E ++LLE M++KG  D D V +    +   +   +      F  +    +S 
Sbjct: 224 LCKDGRMDEAMELLEAMKKKGF-DADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISA 282

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T++ L+         + A  VL  + E G+  D   YT LI    K G+     ++ 
Sbjct: 283 NVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL 342

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           + MV  G EP+  TY  L+ G  K G V  AF    +M  K  K D V +N L+      
Sbjct: 343 NLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDK 402

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G VD A  +   M    + ++P+  T   L+      G++ +A ++++ + K    G   
Sbjct: 403 GKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLV 462

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y + +  C + G  + A  ++  +   G +P+    S LID       +  A  +  E 
Sbjct: 463 TYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEM 522

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           +  G++  +  Y++LM +     + ++A  L++ M +   +P + + N +I         
Sbjct: 523 RTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDF 582

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
               E+   M  +GL P+ +T+S L+    +  +++     L +    G  P+ +++  +
Sbjct: 583 QFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSL 642

Query: 451 IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 510
           +   S + +    +N                       +  +    GT+   ++VS +L 
Sbjct: 643 LKGLSSKGDTTEIIN-----------------------LLHQMAAKGTVLDRKIVSTILT 679

Query: 511 CL 512
           CL
Sbjct: 680 CL 681



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 186/425 (43%), Gaps = 13/425 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVP 88
           L R G + E + L+ +M RK +      Y+     +CK++K +KEA             P
Sbjct: 154 LCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKK-LKEAVGLLLEMEAAGCFP 212

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N    T  ++  +C   +  E A ++L  +++ G  AD  LY TLI+    +G +D   E
Sbjct: 213 NSVTCT-TLMDGLCKDGRMDE-AMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKE 270

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM+  GI  NV TY  L+ G  + GQ  +A      M    + PD V +  LI    
Sbjct: 271 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLC 330

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G    A D+L  M  +    +P ++T   L+      G V  A ++ +M+ +   K  
Sbjct: 331 KDGRATHAMDLLNLMVEKGE--EPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKAD 388

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDM--TKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
              Y   +      G  + A  +++ M   +  + P+    + LI      G++  A +I
Sbjct: 389 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 448

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            ++   +G    +++Y+ L+G C  A   ++A+EL++ +  +   P   T + LI   C 
Sbjct: 449 HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCK 508

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L     +  +M++ GL P    Y+ L+ +  ++  +E    L  +       P+++ 
Sbjct: 509 MRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIIS 568

Query: 447 FKCII 451
           F  +I
Sbjct: 569 FNTMI 573



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 139/330 (42%), Gaps = 8/330 (2%)

Query: 129 LYTTLITTCAK-SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
           L T L + C K + +      +FH  ++  + P+  T   L+D  A++     AF  Y  
Sbjct: 40  LETQLRSLCQKPNSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRR 99

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M   +V P     +ALI     +      F V+  +      V+   + I  L   C N 
Sbjct: 100 MTHVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNI-VLKGLCRNG 158

Query: 248 GQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           G  +    + +M  K     +P++  Y   IN   +    + A  +  +M   G  P+ V
Sbjct: 159 GVFEAMGLIREMGRK---SVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSV 215

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + L+D     G+++ A E+L+  K +G    ++ Y +L+    N  N  +  EL++ M
Sbjct: 216 TCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEM 275

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
               +   V T + L+  LC   Q  +   VL+ M   G+ P+ +TY+ L+    +    
Sbjct: 276 LGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRA 335

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
              + LL+   E G  P+ V +  ++ G+C
Sbjct: 336 THAMDLLNLMVEKGEEPSNVTYNVLLSGLC 365



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 141/353 (39%), Gaps = 47/353 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    ++G + +   +L  M  KG       Y+     +C   K + EA + F  
Sbjct: 356 TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGK-VDEALKLFNS 414

Query: 87  VPN------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +      P + TFNML+           A ++ R + + G   +   Y  L+  C K+
Sbjct: 415 MFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKA 474

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK+    E++ ++++ G  PN  TY  LIDG  K   +  A G +  MR+  + P    +
Sbjct: 475 GKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDY 534

Query: 201 NALITACGQSGAVDRAFDVLAEM-NAEVHP------------------------------ 229
           N L+ +  + G++++A  +  EM NA   P                              
Sbjct: 535 NTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVE 594

Query: 230 --VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD +T   L+   +  G++D A+   + +          VY   +   S  GD   
Sbjct: 595 MGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTE 654

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ---EAKNQGISV 337
             ++   M  KG + D   +S ++    H+ +     E+L    +  ++G S+
Sbjct: 655 IINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASI 707


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 196/438 (44%), Gaps = 11/438 (2%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AI 77
           V+  L  YN LI    + G++ E   L  +M  KGL   D  Y     + CK  K   A+
Sbjct: 351 VAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVAL 410

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               +  ++    T+  ++ L+S          A  +   +   GLK +  +YT+LI+  
Sbjct: 411 HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGY 470

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G++   F ++HEM   GI PN +T+ ALI G   A ++A+A   +G M   NV P+ 
Sbjct: 471 CKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNE 530

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V +N LI    + G   RAF++L EM  +   + PD  T   L+    + G+V  ARE  
Sbjct: 531 VTYNVLIEGHCKEGNTVRAFELLDEMVEK--GLVPDTYTYRPLISGLCSTGRVSEAREFM 588

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             +     K     ++  ++   + G  + A     +M  +GV  D V  S LI      
Sbjct: 589 NDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQ 648

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
               +  ++L++  +QG+    + Y++++ A + A N + A  L++ M S    P V T 
Sbjct: 649 QDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTY 708

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
            ALI  LC    + K   +  +M +    PN  TY+  L     + ++E  + L     E
Sbjct: 709 TALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE 768

Query: 438 DGVIPNLVMFKCII-GMC 454
            G + N V +  +I G C
Sbjct: 769 -GFLANTVTYNILIRGFC 785



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 180/388 (46%), Gaps = 8/388 (2%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P+L  +N L+ S+C   K  E A  +   +   GL  +   Y+ LI +  K GK+D    
Sbjct: 353 PSLFVYNALINSMCKDGKLDE-AESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALH 411

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              +M   GI+  V+ Y +LI G  K G++  A   +  M +  +KP+ V++ +LI+   
Sbjct: 412 FLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYC 471

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  AF +  EM  +   + P+  T  AL+    +A ++  A +++  + ++N+   
Sbjct: 472 KEGELHNAFRLYHEMTGK--GISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPN 529

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y + I    + G+   A  + D+M +KG++PD      LI      G+V  A E + 
Sbjct: 530 EVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMN 589

Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           + + +   +  + +S+L+ G C   +    AL+    M    +   +   + LI  +   
Sbjct: 590 DLQGEQQKLNEMCFSALLHGYCKEGR-LDDALDACREMLGRGVAMDLVCYSVLIYGILRQ 648

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
                 +++L  M   GL P+ + Y+ ++ A  +  ++++   L      +G +PN+V +
Sbjct: 649 QDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTY 708

Query: 448 KCII-GMCS-RRYEKARTLNEHVLSFNS 473
             +I G+C     +KA  L   +L+ NS
Sbjct: 709 TALINGLCKIGLMDKAELLCREMLASNS 736



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 180/435 (41%), Gaps = 42/435 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N LIR  +    + L +++   GL     VY A   ++C+ +  I+      ++     +
Sbjct: 188 NGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCD 247

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            +++T+N+ +     ++    A ++  L+   GL+AD   Y TL+    K  + +A  E+
Sbjct: 248 LSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEM 307

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            +EM+  G  P+      L+DG  K G +  AF     ++   V P   V+N        
Sbjct: 308 MNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYN-------- 359

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
                                        AL+ +    G++D A  ++  +    +    
Sbjct: 360 -----------------------------ALINSMCKDGKLDEAESLFNNMGHKGLFPND 390

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+I I+   + G  + A      MT+ G+       S+LI      GK+ AA  +  E
Sbjct: 391 VTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDE 450

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+   ++ Y+SL+           A  LY  M    + P   T  ALI+ LC  ++
Sbjct: 451 MIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANR 510

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++  +M    + PN +TY++L+    ++ +      LL +  E G++P+   ++ 
Sbjct: 511 MAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRP 570

Query: 450 II-GMCSR-RYEKAR 462
           +I G+CS  R  +AR
Sbjct: 571 LISGLCSTGRVSEAR 585



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 159/366 (43%), Gaps = 3/366 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T + +++     +    A  +   +  +GL+ D  +YT ++ +  +        EV
Sbjct: 178 PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREV 237

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M ++G + +V TY   I G  K  +V +A     ++  K ++ D   +  L+    +
Sbjct: 238 IGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCK 297

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
               +   +++ EM  E   V P    +  L+      G +  A ++   + K+ +  + 
Sbjct: 298 VEEFEAGEEMMNEM-IEFGFV-PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSL 355

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   IN   + G  + A S++++M  KG+ P++V  S LID     GK++ A   L +
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI   +  YSSL+         + A  L++ M +  LKP V    +LI+  C   +
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE 475

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L     +  +M   G+ PNT T++ L+      + +     L  +  E  VIPN V +  
Sbjct: 476 LHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 450 II-GMC 454
           +I G C
Sbjct: 536 LIEGHC 541



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/435 (23%), Positives = 191/435 (43%), Gaps = 23/435 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEA 80
           +YN  IR      R+ E +++   +  KGL      Y      +CK       ++ + E 
Sbjct: 252 TYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEM 311

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             F  +   P+ +  + L+       +   AF ++  V++ G+     +Y  LI +  K 
Sbjct: 312 IEFGFV---PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKD 368

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK+D    +F+ M + G+ PN  TY  LID   K G++  A    G M    +K     +
Sbjct: 369 GKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPY 428

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           ++LI+   + G +  A  +  EM A  + + P+ +   +L+      G++  A   +++ 
Sbjct: 429 SSLISGHCKLGKLRAAKSLFDEMIA--NGLKPNVVIYTSLISGYCKEGELHNA---FRLY 483

Query: 261 HKYNIKG-TPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           H+   KG +P  YT    I+          A  ++ +M +  VIP+EV  + LI+     
Sbjct: 484 HEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKE 543

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVST 376
           G    AFE+L E   +G+     +Y  L+ G CS  +   +A E    ++  + K     
Sbjct: 544 GNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGR-VSEAREFMNDLQGEQQKLNEMC 602

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            +AL+   C   +L   ++   +M   G+  + + YS+L+    R+ D    + LL Q  
Sbjct: 603 FSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMH 662

Query: 437 EDGVIPNLVMFKCII 451
           + G+ P+ V++  +I
Sbjct: 663 DQGLRPDNVLYTTMI 677



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 159/363 (43%), Gaps = 12/363 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    ++G      +LL++M  KGL+     Y      +C + + + EA  F   
Sbjct: 532 TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGR-VSEAREFMND 590

Query: 87  VPNPTLSTFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +         M  S        EG    A    R +   G+  D   Y+ LI    +   
Sbjct: 591 LQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQD 650

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
             ++ ++  +M + G+ P+   Y  +ID  AKAG +  AFG + IM S+   P+ V + A
Sbjct: 651 RRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTA 710

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    + G +D+A  +  EM A      P+  T    +    + G +++A +++ ++ +
Sbjct: 711 LINGLCKIGLMDKAELLCREMLASNSL--PNQNTYACFLDYLTSEGNIEKAIQLHDVLLE 768

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             +  T   Y I I    + G  + A  V  +M   G+ PD +  S +I      G ++ 
Sbjct: 769 GFLANTV-TYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKE 827

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A ++ +   N+G++   ++Y+ L+  C       KA EL + M    +KP  +T N+LI 
Sbjct: 828 AIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIH 887

Query: 383 ALC 385
             C
Sbjct: 888 GTC 890



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 183/421 (43%), Gaps = 47/421 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVPNP 90
           ++G +     L  +M  KG+      + A    +C + + + EA + F       ++PN 
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANR-MAEANKLFGEMVEWNVIPNE 530

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+N+L+       ++  AF++L  + E GL  D   Y  LI+    +G+V    E  
Sbjct: 531 V--TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFM 588

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA--------------------YGIMRS 190
           +++     + N   + AL+ G  K G++  A  A                    YGI+R 
Sbjct: 589 NDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQ 648

Query: 191 KN---------------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           ++               ++PD V++  +I A  ++G +  AF +   M +E     P+ +
Sbjct: 649 QDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSE--GCLPNVV 706

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T  AL+      G +D+A  + + +   N       Y   ++  +  G+ E A  ++D +
Sbjct: 707 TYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL 766

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            + G + + V  + LI      G+++ A E+L    + GIS   ISYS+++       + 
Sbjct: 767 LE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDL 825

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           ++A++L+E M +  + P     N LI   C   +L K  E+  DM   G+ PN  TY+ L
Sbjct: 826 KEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSL 885

Query: 416 L 416
           +
Sbjct: 886 I 886



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 72/149 (48%)

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G++P    LS +++      +   A  +  E  + G+   +  Y++++ +    K+
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           + +A E+   M+S     +V+T N  I  LC   ++ + +E+ + +   GL  +  TY  
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L++   + ++ E G  ++++  E G +P+
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPS 319


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 202/433 (46%), Gaps = 21/433 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-- 85
           YN LI      G +++ I++ + M  KGL      Y+      CK+ +A   A R  K  
Sbjct: 357 YNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQA-DNAERLLKEM 415

Query: 86  --LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK---ADCKLYTTLITTCAKS 140
             +  N    +F  ++ +  S    + A   LR V E  L+       L TTLI+   K 
Sbjct: 416 LSIGFNVNQGSFTSVICLLCSHLMFDSA---LRFVGEMLLRNMSPGGGLLTTLISGLCKH 472

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK     E++ + +N G   +  T  AL+ G  +AG++ +AF     +  +    DRV +
Sbjct: 473 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSY 532

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N LI+ C     +D AF  L EM      + PD+ T   L+    N  +V+ A + +   
Sbjct: 533 NTLISGCCGKKKLDEAFMFLDEMVK--RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC 590

Query: 261 HKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +  +   P+VYT  + I+ C +    E     +D+M  K V P+ V  + LI     +G
Sbjct: 591 KRNGM--LPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSG 648

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           ++  A E+ ++ K++GIS    +Y+SL+   S     ++A  L+E M+   L+P V    
Sbjct: 649 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 708

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           ALI       Q+ K   +L +M S  + PN ITY++++    R  +V     LL++ +E 
Sbjct: 709 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 768

Query: 439 GVIPNLVMFKCII 451
           G++P+ + +K  I
Sbjct: 769 GIVPDSITYKEFI 781



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 190/460 (41%), Gaps = 46/460 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAFRFF-KLVPN 89
           N   + G++ E + L   ME  G+      ++       +C       EAF F  K+V  
Sbjct: 257 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYD---EAFMFKEKMVER 313

Query: 90  ---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              PTL T+++L+     +K    A+ VL+ + + G   +  +Y  LI +  ++G ++  
Sbjct: 314 GMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKA 373

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA---------------FGAY------ 185
            E+   MV+ G+     TY  LI G  K GQ   A                G++      
Sbjct: 374 IEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICL 433

Query: 186 --------------GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
                         G M  +N+ P   +   LI+   + G   +A ++  +   +   VD
Sbjct: 434 LCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVD 493

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
               T  AL+     AG++D A  + K I           Y   I+ C      + A   
Sbjct: 494 TR--TSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMF 551

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
            D+M K+G+ PD    S LI    +  KVE A +   + K  G+   + +YS ++  C  
Sbjct: 552 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 611

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A+  ++  E ++ M S  ++P     N LI A C   +L   +E+  DMK  G+ PN+ T
Sbjct: 612 AERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 671

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           Y+ L+        VE   +L  + + +G+ PN+  +  +I
Sbjct: 672 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 711



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 119/560 (21%), Positives = 230/560 (41%), Gaps = 61/560 (10%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           +S C D  E++ RK    + +VY  +F      +     A   F ++ N    P+ +T N
Sbjct: 167 LSLCFD--EEIRRKMSDLLIEVYCTQF-----KRDGCYLALDVFPVLANKGMFPSKTTCN 219

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           +L++    + + +   +   +V + G+  D  L+TT I    K GKV+   ++F +M  A
Sbjct: 220 ILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 278

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G+ PNV T+  +IDG    G+  +AF     M  + ++P  + ++ L+    ++  +  A
Sbjct: 279 GVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDA 338

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
           + VL EM  +  P  P+ I    L+ +   AG +++A E+  ++    +  T   Y   I
Sbjct: 339 YFVLKEMTKKGFP--PNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 396

Query: 277 NCCSQTGDWEFA--------------------------CS--VYD-------DMTKKGVI 301
               + G  + A                          CS  ++D       +M  + + 
Sbjct: 397 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 456

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P    L+ LI      GK   A E+  +  N+G  V   + ++L+     A    +A  +
Sbjct: 457 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 516

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            + +          + N LI+  C   +L +    L +M   GL P+  TYSIL+     
Sbjct: 517 QKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFN 576

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG----- 474
            + VE  +      K +G++P++  +  +I  C +  R E+ +   + ++S N       
Sbjct: 577 MNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVV 636

Query: 475 -----RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLG 529
                R    +   S+AL +  +    G  P     + ++  + +    +  + L E + 
Sbjct: 637 YNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 696

Query: 530 VSADALKRSNLCSLIDGFGE 549
           +        +  +LIDG+G+
Sbjct: 697 MEGLEPNVFHYTALIDGYGK 716



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 144/328 (43%), Gaps = 38/328 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---- 90
           L + G+ S+ ++L      KG +   +  +A    +C++ K + EAFR  K +       
Sbjct: 469 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGK-LDEAFRIQKEILGRGCVM 527

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              ++N L+S C   K  + AF  L  + + GLK D   Y+ LI       KV+   + +
Sbjct: 528 DRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFW 587

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +    G+ P+V+TY  +IDGC KA +  +    +  M SKNV+P+ VV+N LI A  +S
Sbjct: 588 DDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS 647

Query: 211 GAVDRAFDVLAEMNAE-VHP--------------------------------VDPDHITI 237
           G +  A ++  +M  + + P                                ++P+    
Sbjct: 648 GRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHY 707

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            AL+      GQ+ +   + + +H  N+      YT+ I   ++ G+   A  + ++M +
Sbjct: 708 TALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 767

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           KG++PD +     I      G V  AF+
Sbjct: 768 KGIVPDSITYKEFIYGYLKQGGVLEAFK 795



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 40/229 (17%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L    ++ E I   +D +R G+L     Y       CK+++  +E   FF  + +    P
Sbjct: 574 LFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT-EEGQEFFDEMMSKNVQP 632

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               +N L+     S     A ++   ++  G+  +   YT+LI   +   +V+    +F
Sbjct: 633 NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 692

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKA----------------------FGAYGI- 187
            EM   G+EPNV  Y ALIDG  K GQ+ K                        G Y   
Sbjct: 693 EEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 752

Query: 188 ------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
                       MR K + PD + +   I    + G V  AF    E N
Sbjct: 753 GNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDEEN 801



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 84/226 (37%), Gaps = 73/226 (32%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LIR     GR+S  ++L EDM+ KG+                               
Sbjct: 637 YNHLIRAYCRSGRLSMALELREDMKHKGI------------------------------- 665

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            +P  +T+  L+              ++  V+EA L                        
Sbjct: 666 -SPNSATYTSLIK----------GMSIISRVEEAKL------------------------ 690

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F EM   G+EPNV  Y ALIDG  K GQ+ K       M SKNV P+++ +  +I   
Sbjct: 691 -LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 749

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            + G V  A  +L EM  +   + PD IT    +      G V  A
Sbjct: 750 ARDGNVTEASRLLNEMREK--GIVPDSITYKEFIYGYLKQGGVLEA 793


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/508 (22%), Positives = 210/508 (41%), Gaps = 85/508 (16%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV-----PNPTLSTF 95
           + E I+L   M  KGL+     Y       C  +++ +      +++     P P   T+
Sbjct: 257 LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPI--TY 314

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N L+       D E AF++   +   G++A+  ++ TL+    K+GK++   E+  EM+ 
Sbjct: 315 NALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMME 374

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAF--------------------------------G 183
            G+EP+  TY  LI+G  +   +A+AF                                G
Sbjct: 375 KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQG 434

Query: 184 AYGIMRS---KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
              I+R      +KP+ VV+  L+TA  + G V+ +  +L  M  +   + PD     +L
Sbjct: 435 TNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQ--GILPDVFCYNSL 492

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           +     A +++ AR     + +  ++     Y   I+  S+ G+ E A   +++M   GV
Sbjct: 493 IIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGV 552

Query: 301 IPDEVFLSALIDFAGHA-------------------------------------GKVEAA 323
           +P+    +ALI+  GH                                      GK+  A
Sbjct: 553 LPNVGIYTALIE--GHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEA 610

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           F I  E + +G+     +Y+SL+       N  KA +L E M    + P + T N LI  
Sbjct: 611 FGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDG 670

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++ +   +  D++  GL PN +TY+ ++    +  +      LL +    GV P+
Sbjct: 671 LCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPD 730

Query: 444 LVMFKCIIGMCSR--RYEKARTLNEHVL 469
             ++  I+  C +  ++EKA  L + +L
Sbjct: 731 AFIYNVILNFCCKEEKFEKALDLFQEML 758



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 210/442 (47%), Gaps = 8/442 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + + G++ + ++++++M  KG+    + Y       C+ Q  +  AF     +     
Sbjct: 354 NGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQN-MARAFELLDEMKKRKL 412

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PT+ T++++++      + +G   +LR +   GLK +  +YTTL+T  AK G+V+    
Sbjct: 413 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 472

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M   GI P+V  Y +LI G  KA ++ +A      M  + ++P+   + A I    
Sbjct: 473 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYS 532

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G ++ A     EM +    V P+     AL++     G V  A  V++ I    +   
Sbjct: 533 KAGEMEIADRYFNEMLS--CGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQD 590

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            + Y++ I+  S+ G    A  ++ ++ +KG++P+    ++LI  +   G V+ A ++L+
Sbjct: 591 VQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLE 650

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   +GI+  I++Y+ L+     A   ++A  L++ ++   L P   T  A++   C   
Sbjct: 651 EMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSK 710

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
                 ++L +M   G+ P+   Y+++L  C +++  E  L L  +  E G    +    
Sbjct: 711 NPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNT 770

Query: 449 CIIGMC-SRRYEKARTLNEHVL 469
            I G C S + ++A  L E ++
Sbjct: 771 LIEGYCKSGKLQEANHLLEEMI 792



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 201/430 (46%), Gaps = 47/430 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVPNP 90
           ++GR+ E   +LE M  +G+L     Y++     CK+++ ++EA  +       +L PN 
Sbjct: 463 KEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKR-MEEARTYLMEMLERRLRPNA 521

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+   +   + + + E A +    +   G+  +  +YT LI    K G V   F VF
Sbjct: 522 --HTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVF 579

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             +++  +  +V TY  LI G ++ G++ +AFG +  ++ K + P+   +N+LI+   + 
Sbjct: 580 RFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQ 639

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------- 257
           G VD+A  +L EM   +  ++PD +T   L+     AG+++RA+ ++             
Sbjct: 640 GNVDKASQLLEEMC--IKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCV 697

Query: 258 -------------------KMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDM 295
                              +++ +  ++G P    +Y + +N C +   +E A  ++ +M
Sbjct: 698 TYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEM 757

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            +KG     V  + LI+    +GK++ A  +L+E   +      ++Y+SL+     A   
Sbjct: 758 LEKG-FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMM 816

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +A  L+  M+   + PT  T  +L+    +   + +   +  +M + G+ P+ +TY ++
Sbjct: 817 GEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVM 876

Query: 416 LVACERKDDV 425
           + A  R+ +V
Sbjct: 877 IDAYCREGNV 886



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 161/352 (45%), Gaps = 17/352 (4%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           ++  L+ +  K G +     VF    N    P++ +  +L+    K  +V   +  +  M
Sbjct: 156 IFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGM 215

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---------------PD 233
            +  V PD   +  +I+A  + G V  A  VL EM  +   +D               PD
Sbjct: 216 CAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPD 275

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T   L+       +   A+ +   +    +K  P  Y   I+   + GD E A  + D
Sbjct: 276 LYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKD 335

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +M   G+  + +  + L++    AGK+E A EI+QE   +G+     +YS L+      +
Sbjct: 336 EMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQ 395

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           N  +A EL + MK  KL PTV T + +I  LC    L  T  +L +M   GL PN + Y+
Sbjct: 396 NMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYT 455

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKART 463
            L+ A  ++  VE   M+L + +E G++P++  +   IIG C ++R E+ART
Sbjct: 456 TLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEART 507



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 169/382 (44%), Gaps = 22/382 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           +  V + + +Y+ LI    R G++ E   +  +++ KGLL     Y++     CK Q  +
Sbjct: 584 SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCK-QGNV 642

Query: 78  KEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A +  + +     NP + T+N+L+     + + E A  +   ++  GL  +C  Y  +
Sbjct: 643 DKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAM 702

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    KS    A F++  EM+  G+ P+   Y  +++ C K  +  KA   +  M  K  
Sbjct: 703 VDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGF 762

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
               V FN LI    +SG +  A  +L EM  +     P+H+T  +L+     AG +  A
Sbjct: 763 -ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEK--QFIPNHVTYTSLIDHNCKAGMMGEA 819

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           + ++  + + N+  T + YT  ++     G+     +++++M  KG+ PD++    +ID 
Sbjct: 820 KRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDA 879

Query: 314 AGHAGKVEAAFEILQE------AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
               G V  A ++  E          G  +G+ + S +      A N  +A E+   M  
Sbjct: 880 YCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVK 939

Query: 368 IKLKPTVSTMNALITALCDGDQ 389
                  +++  L+    DG+Q
Sbjct: 940 FGWVSNTTSLGDLV----DGNQ 957



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 19/168 (11%)

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P+ V    L+D     G +  A  +    KN      ++S +SL+G        +   ++
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 362 YEHMKSIKLKPTVSTMNALITALCD--------------GDQ---LPKTMEVLSDMKSLG 404
           ++ M + K+ P V T   +I+A C               G++   L + +E+   M   G
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKG 271

Query: 405 LCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L P+  TY IL+   C  K   E  LMLL +  + G+ P  + +  +I
Sbjct: 272 LVPDLYTYDILINGFCMEKRSREAKLMLL-EMIDVGLKPEPITYNALI 318


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 202/433 (46%), Gaps = 21/433 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-- 85
           YN LI      G +++ I++ + M  KGL      Y+      CK+ +A   A R  K  
Sbjct: 368 YNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQA-DNAERLLKEM 426

Query: 86  --LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK---ADCKLYTTLITTCAKS 140
             +  N    +F  ++ +  S    + A   LR V E  L+       L TTLI+   K 
Sbjct: 427 LSIGFNVNQGSFTSVICLLCSHLMFDSA---LRFVGEMLLRNMSPGGGLLTTLISGLCKH 483

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK     E++ + +N G   +  T  AL+ G  +AG++ +AF     +  +    DRV +
Sbjct: 484 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSY 543

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N LI+ C     +D AF  L EM      + PD+ T   L+    N  +V+ A + +   
Sbjct: 544 NTLISGCCGKKKLDEAFMFLDEMVK--RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC 601

Query: 261 HKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +  +   P+VYT  + I+ C +    E     +D+M  K V P+ V  + LI     +G
Sbjct: 602 KRNGM--LPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSG 659

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           ++  A E+ ++ K++GIS    +Y+SL+   S     ++A  L+E M+   L+P V    
Sbjct: 660 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 719

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           ALI       Q+ K   +L +M S  + PN ITY++++    R  +V     LL++ +E 
Sbjct: 720 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 779

Query: 439 GVIPNLVMFKCII 451
           G++P+ + +K  I
Sbjct: 780 GIVPDSITYKEFI 792



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 190/460 (41%), Gaps = 46/460 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAFRFF-KLVPN 89
           N   + G++ E + L   ME  G+      ++       +C       EAF F  K+V  
Sbjct: 268 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYD---EAFMFKEKMVER 324

Query: 90  ---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              PTL T+++L+     +K    A+ VL+ + + G   +  +Y  LI +  ++G ++  
Sbjct: 325 GMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKA 384

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA---------------FGAY------ 185
            E+   MV+ G+     TY  LI G  K GQ   A                G++      
Sbjct: 385 IEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICL 444

Query: 186 --------------GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
                         G M  +N+ P   +   LI+   + G   +A ++  +   +   VD
Sbjct: 445 LCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVD 504

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
               T  AL+     AG++D A  + K I           Y   I+ C      + A   
Sbjct: 505 TR--TSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMF 562

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
            D+M K+G+ PD    S LI    +  KVE A +   + K  G+   + +YS ++  C  
Sbjct: 563 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 622

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A+  ++  E ++ M S  ++P     N LI A C   +L   +E+  DMK  G+ PN+ T
Sbjct: 623 AERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 682

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           Y+ L+        VE   +L  + + +G+ PN+  +  +I
Sbjct: 683 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 722



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 119/560 (21%), Positives = 230/560 (41%), Gaps = 61/560 (10%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           +S C D  E++ RK    + +VY  +F      +     A   F ++ N    P+ +T N
Sbjct: 178 LSLCFD--EEIRRKMSDLLIEVYCTQF-----KRDGCYLALDVFPVLANKGMFPSKTTCN 230

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           +L++    + + +   +   +V + G+  D  L+TT I    K GKV+   ++F +M  A
Sbjct: 231 ILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 289

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G+ PNV T+  +IDG    G+  +AF     M  + ++P  + ++ L+    ++  +  A
Sbjct: 290 GVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDA 349

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
           + VL EM  +  P  P+ I    L+ +   AG +++A E+  ++    +  T   Y   I
Sbjct: 350 YFVLKEMTKKGFP--PNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 407

Query: 277 NCCSQTGDWEFA--------------------------CS--VYD-------DMTKKGVI 301
               + G  + A                          CS  ++D       +M  + + 
Sbjct: 408 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 467

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P    L+ LI      GK   A E+  +  N+G  V   + ++L+     A    +A  +
Sbjct: 468 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 527

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            + +          + N LI+  C   +L +    L +M   GL P+  TYSIL+     
Sbjct: 528 QKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFN 587

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG----- 474
            + VE  +      K +G++P++  +  +I  C +  R E+ +   + ++S N       
Sbjct: 588 MNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVV 647

Query: 475 -----RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLG 529
                R    +   S+AL +  +    G  P     + ++  + +    +  + L E + 
Sbjct: 648 YNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 707

Query: 530 VSADALKRSNLCSLIDGFGE 549
           +        +  +LIDG+G+
Sbjct: 708 MEGLEPNVFHYTALIDGYGK 727



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 144/328 (43%), Gaps = 38/328 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---- 90
           L + G+ S+ ++L      KG +   +  +A    +C++ K + EAFR  K +       
Sbjct: 480 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGK-LDEAFRIQKEILGRGCVM 538

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              ++N L+S C   K  + AF  L  + + GLK D   Y+ LI       KV+   + +
Sbjct: 539 DRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFW 598

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +    G+ P+V+TY  +IDGC KA +  +    +  M SKNV+P+ VV+N LI A  +S
Sbjct: 599 DDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS 658

Query: 211 GAVDRAFDVLAEMNAE-VHP--------------------------------VDPDHITI 237
           G +  A ++  +M  + + P                                ++P+    
Sbjct: 659 GRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHY 718

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            AL+      GQ+ +   + + +H  N+      YT+ I   ++ G+   A  + ++M +
Sbjct: 719 TALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 778

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           KG++PD +     I      G V  AF+
Sbjct: 779 KGIVPDSITYKEFIYGYLKQGGVLEAFK 806



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 40/229 (17%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L    ++ E I   +D +R G+L     Y       CK+++  +E   FF  + +    P
Sbjct: 585 LFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT-EEGQEFFDEMMSKNVQP 643

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               +N L+     S     A ++   ++  G+  +   YT+LI   +   +V+    +F
Sbjct: 644 NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 703

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKA----------------------FGAYGI- 187
            EM   G+EPNV  Y ALIDG  K GQ+ K                        G Y   
Sbjct: 704 EEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 763

Query: 188 ------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
                       MR K + PD + +   I    + G V  AF    E N
Sbjct: 764 GNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDEEN 812



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 84/226 (37%), Gaps = 73/226 (32%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LIR     GR+S  ++L EDM+ KG+                               
Sbjct: 648 YNHLIRAYCRSGRLSMALELREDMKHKGI------------------------------- 676

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            +P  +T+  L+              ++  V+EA L                        
Sbjct: 677 -SPNSATYTSLIK----------GMSIISRVEEAKL------------------------ 701

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F EM   G+EPNV  Y ALIDG  K GQ+ K       M SKNV P+++ +  +I   
Sbjct: 702 -LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 760

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            + G V  A  +L EM  +   + PD IT    +      G V  A
Sbjct: 761 ARDGNVTEASRLLNEMREK--GIVPDSITYKEFIYGYLKQGGVLEA 804


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 202/433 (46%), Gaps = 21/433 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-- 85
           YN LI      G +++ I++ + M  KGL      Y+      CK+ +A   A R  K  
Sbjct: 381 YNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQA-DNAERLLKEM 439

Query: 86  --LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK---ADCKLYTTLITTCAKS 140
             +  N    +F  ++ +  S    + A   LR V E  L+       L TTLI+   K 
Sbjct: 440 LSIGFNVNQGSFTSVICLLCSHLMFDSA---LRFVGEMLLRNMSPGGGLLTTLISGLCKH 496

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK     E++ + +N G   +  T  AL+ G  +AG++ +AF     +  +    DRV +
Sbjct: 497 GKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSY 556

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N LI+ C     +D AF  L EM      + PD+ T   L+    N  +V+ A + +   
Sbjct: 557 NTLISGCCGKKKLDEAFMFLDEMVK--RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC 614

Query: 261 HKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +  +   P+VYT  + I+ C +    E     +D+M  K V P+ V  + LI     +G
Sbjct: 615 KRNGM--LPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSG 672

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           ++  A E+ ++ K++GIS    +Y+SL+   S     ++A  L+E M+   L+P V    
Sbjct: 673 RLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 732

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           ALI       Q+ K   +L +M S  + PN ITY++++    R  +V     LL++ +E 
Sbjct: 733 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 792

Query: 439 GVIPNLVMFKCII 451
           G++P+ + +K  I
Sbjct: 793 GIVPDSITYKEFI 805



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 190/460 (41%), Gaps = 46/460 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAFRFF-KLVPN 89
           N   + G++ E + L   ME  G+      ++       +C       EAF F  K+V  
Sbjct: 281 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYD---EAFMFKEKMVER 337

Query: 90  ---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              PTL T+++L+     +K    A+ VL+ + + G   +  +Y  LI +  ++G ++  
Sbjct: 338 GMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKA 397

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA---------------FGAY------ 185
            E+   MV+ G+     TY  LI G  K GQ   A                G++      
Sbjct: 398 IEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICL 457

Query: 186 --------------GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
                         G M  +N+ P   +   LI+   + G   +A ++  +   +   VD
Sbjct: 458 LCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVD 517

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
               T  AL+     AG++D A  + K I           Y   I+ C      + A   
Sbjct: 518 TR--TSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMF 575

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
            D+M K+G+ PD    S LI    +  KVE A +   + K  G+   + +YS ++  C  
Sbjct: 576 LDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 635

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A+  ++  E ++ M S  ++P     N LI A C   +L   +E+  DMK  G+ PN+ T
Sbjct: 636 AERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSAT 695

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           Y+ L+        VE   +L  + + +G+ PN+  +  +I
Sbjct: 696 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 735



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 119/560 (21%), Positives = 230/560 (41%), Gaps = 61/560 (10%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           +S C D  E++ RK    + +VY  +F      +     A   F ++ N    P+ +T N
Sbjct: 191 LSLCFD--EEIRRKMSDLLIEVYCTQF-----KRDGCYLALDVFPVLANKGMFPSKTTCN 243

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           +L++    + + +   +   +V + G+  D  L+TT I    K GKV+   ++F +M  A
Sbjct: 244 ILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 302

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G+ PNV T+  +IDG    G+  +AF     M  + ++P  + ++ L+    ++  +  A
Sbjct: 303 GVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDA 362

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
           + VL EM  +  P  P+ I    L+ +   AG +++A E+  ++    +  T   Y   I
Sbjct: 363 YFVLKEMTKKGFP--PNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420

Query: 277 NCCSQTGDWEFA--------------------------CS--VYD-------DMTKKGVI 301
               + G  + A                          CS  ++D       +M  + + 
Sbjct: 421 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 480

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P    L+ LI      GK   A E+  +  N+G  V   + ++L+     A    +A  +
Sbjct: 481 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 540

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            + +          + N LI+  C   +L +    L +M   GL P+  TYSIL+     
Sbjct: 541 QKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFN 600

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG----- 474
            + VE  +      K +G++P++  +  +I  C +  R E+ +   + ++S N       
Sbjct: 601 MNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVV 660

Query: 475 -----RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLG 529
                R    +   S+AL +  +    G  P     + ++  + +    +  + L E + 
Sbjct: 661 YNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 720

Query: 530 VSADALKRSNLCSLIDGFGE 549
           +        +  +LIDG+G+
Sbjct: 721 MEGLEPNVFHYTALIDGYGK 740



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 144/328 (43%), Gaps = 38/328 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---- 90
           L + G+ S+ ++L      KG +   +  +A    +C++ K + EAFR  K +       
Sbjct: 493 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGK-LDEAFRIQKEILGRGCVM 551

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              ++N L+S C   K  + AF  L  + + GLK D   Y+ LI       KV+   + +
Sbjct: 552 DRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFW 611

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +    G+ P+V+TY  +IDGC KA +  +    +  M SKNV+P+ VV+N LI A  +S
Sbjct: 612 DDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS 671

Query: 211 GAVDRAFDVLAEMNAE-VHP--------------------------------VDPDHITI 237
           G +  A ++  +M  + + P                                ++P+    
Sbjct: 672 GRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHY 731

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            AL+      GQ+ +   + + +H  N+      YT+ I   ++ G+   A  + ++M +
Sbjct: 732 TALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 791

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           KG++PD +     I      G V  AF+
Sbjct: 792 KGIVPDSITYKEFIYGYLKQGGVLEAFK 819



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 40/229 (17%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L    ++ E I   +D +R G+L     Y       CK+++  +E   FF  + +    P
Sbjct: 598 LFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT-EEGQEFFDEMMSKNVQP 656

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               +N L+     S     A ++   ++  G+  +   YT+LI   +   +V+    +F
Sbjct: 657 NTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLF 716

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKA----------------------FGAYGI- 187
            EM   G+EPNV  Y ALIDG  K GQ+ K                        G Y   
Sbjct: 717 EEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARD 776

Query: 188 ------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
                       MR K + PD + +   I    + G V  AF    E N
Sbjct: 777 GNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFKGSDEEN 825



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 84/226 (37%), Gaps = 73/226 (32%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LIR     GR+S  ++L EDM+ KG+                               
Sbjct: 661 YNHLIRAYCRSGRLSMALELREDMKHKGI------------------------------- 689

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            +P  +T+  L+              ++  V+EA L                        
Sbjct: 690 -SPNSATYTSLIK----------GMSIISRVEEAKL------------------------ 714

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F EM   G+EPNV  Y ALIDG  K GQ+ K       M SKNV P+++ +  +I   
Sbjct: 715 -LFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 773

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            + G V  A  +L EM  +   + PD IT    +      G V  A
Sbjct: 774 ARDGNVTEASRLLNEMREK--GIVPDSITYKEFIYGYLKQGGVLEA 817


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 224/498 (44%), Gaps = 44/498 (8%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+N+L+    S  + +        ++  G   +   Y TLI    K G++D  F 
Sbjct: 7   SPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFG 66

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M + G++PN+ +Y  +I+G  + G + +A+     M  K   PD V +N L+    
Sbjct: 67  LLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC 126

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G   +A  + AEM    + V P  +T  AL+ +   A  ++RA E +  +    ++  
Sbjct: 127 KEGNFHQALVIHAEMVR--NGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPN 184

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEI 326
              YT  I+  S+ G    A  + ++MT+ G  P  V  +A I   GH    ++E A  +
Sbjct: 185 ERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH--GHCVLERMEEALGV 242

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +QE   +G++  ++SYS+++          +A ++ + M    + P   T ++LI  LC+
Sbjct: 243 VQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCE 302

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L +  ++  +M  +GL P+  TY+ L+ A   + D+   L L  +    G +P+ V 
Sbjct: 303 MRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVT 362

Query: 447 FKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA---------- 496
           +  +I   ++   +ART     L F                ++Y E++ +          
Sbjct: 363 YSVLINGLNK---QARTREAKRLLFK---------------LIYEESVPSDVTYDTLIEN 404

Query: 497 -GTIPTVEVVSKVLG-CLQ-LPYNAD-IRERLVENLGVSADALKRSNLCSLIDGF--GEY 550
              I    VV+ + G C++ L + AD + E +VE      +A+       +I G   G  
Sbjct: 405 CSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYN----VIIHGHCRGGN 460

Query: 551 DPRAFSLLEEAASFGIVP 568
            P+AF+L +E    G VP
Sbjct: 461 LPKAFNLYKEMIHSGFVP 478



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 185/413 (44%), Gaps = 24/413 (5%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L SYN +I    R+G + E  ++LE+M  KG    +  Y+      CK     +     
Sbjct: 79  NLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIH 138

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            ++V N   P++ T+  L++    +++   A +    ++  GL+ + + YTTLI   ++ 
Sbjct: 139 AEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQ 198

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G ++  + + +EM  +G  P+V TY A I G     ++ +A G    M  K + PD V +
Sbjct: 199 GLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSY 258

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + +I+   + G +DRAF +  EM  +   V PD +T  +L++      ++  A ++ + +
Sbjct: 259 STIISGFCRKGELDRAFQMKQEMVEK--GVSPDAVTYSSLIQGLCEMRRLTEACDLSQEM 316

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +      YT  IN     GD   A  ++D+M  KG +PD V  S LI+      + 
Sbjct: 317 LDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQART 376

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHM 365
             A  +L +   +      ++Y +L+  CSN +                  +A  ++E M
Sbjct: 377 REAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESM 436

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
                KP  +  N +I   C G  LPK   +  +M   G  P+T+T   L+ A
Sbjct: 437 VERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKA 489



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 179/378 (47%), Gaps = 24/378 (6%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+ + + PNV+TY  LI G    G++ K  G +G M      P+ V +N LI A  + G 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE- 270
           +D AF +L  M+++   + P+ I+   ++      G +   +E ++++ +   KG TP+ 
Sbjct: 61  IDEAFGLLKSMSSK--GMQPNLISYNVIINGLCREGSM---KEAWEILEEMGYKGFTPDE 115

Query: 271 -VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +N   + G++  A  ++ +M + GV P  V  +ALI+    A  +  A E   +
Sbjct: 116 VTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQ 175

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            + +G+     +Y++L+   S      +A  +   M      P+V T NA I   C  ++
Sbjct: 176 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER 235

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + + + V+ +M   GL P+ ++YS ++    RK +++    +  +  E GV P+ V +  
Sbjct: 236 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 295

Query: 450 II-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIV 495
           +I G+C  RR  +A  L++ +L    G P  E  +T+L            AL ++ E I 
Sbjct: 296 LIQGLCEMRRLTEACDLSQEMLDM--GLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIH 353

Query: 496 AGTIPTVEVVSKVLGCLQ 513
            G +P     S ++  L 
Sbjct: 354 KGFLPDAVTYSVLINGLN 371


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 169/362 (46%), Gaps = 2/362 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    F+ L SV       E A Q    ++   +    +    L+   A+ GK D M   
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M+ AG +P V TY  +ID   K G +  A G +  M+ + + PD V +N++I   G+
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D       EM +     +PD IT   L+      G++ +  E ++ + +  +K   
Sbjct: 181 VGRLDDTVYFFEEMKS--MSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNV 238

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  ++   +    + A   Y DM + G++P+E   ++L+D     G +  AF +  E
Sbjct: 239 VSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADE 298

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+   +++Y++L+    + +  ++A EL+  M +  + P +++  ALI        
Sbjct: 299 MSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKN 358

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + + +E+L +MK  G+ P+ + Y   + +    + +E   +++++ +E G+  N  ++  
Sbjct: 359 MDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTT 418

Query: 450 II 451
           ++
Sbjct: 419 LM 420



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 129/272 (47%), Gaps = 4/272 (1%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P   VF+AL +   +    + A    ++M      V P   +   L+   A  G+ D  +
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKR--CRVFPKTRSCNGLLHKFARLGKTDGMK 118

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
             +K +     K T   Y I I+C  + GD E A  ++++M  +G+IPD V  +++ID  
Sbjct: 119 RFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGY 178

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
           G  G+++      +E K+      +I+Y++L+          K LE +  MK   LKP V
Sbjct: 179 GKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNV 238

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            + + L+ A C  D + + ++   DM+ LGL PN  TY+ L+ A  +  ++     L  +
Sbjct: 239 VSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADE 298

Query: 435 AKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 464
             + GV  N+V +  +I G+C   R ++A  L
Sbjct: 299 MSQVGVEWNVVTYTALIDGLCDVERIKEAEEL 330



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/454 (22%), Positives = 178/454 (39%), Gaps = 50/454 (11%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-----SQKAIKEAFRF 83
           LH + RL   G+        +DM   G       Y+     +CK     +   + E  +F
Sbjct: 105 LHKFARL---GKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKF 161

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             L+P+    T+N ++         +        ++    + D   Y TLI    K GK+
Sbjct: 162 RGLIPDTV--TYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKL 219

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
               E F EM  +G++PNV +Y  L+D   K   + +A   Y  MR   + P+   + +L
Sbjct: 220 PKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSL 279

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           + A  + G +  AF +  EM+     V+ + +T  AL+    +  ++  A E++  +   
Sbjct: 280 VDAYCKIGNLSDAFRLADEMSQV--GVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTA 337

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            +      YT  I+   +  + + A  + D+M  +G+ PD +     I       K+EAA
Sbjct: 338 GVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAA 397

Query: 324 FEILQEAKNQGISVGIISYSSLM------------------------------------G 347
             ++ E + +GI      Y++LM                                    G
Sbjct: 398 KVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDG 457

Query: 348 ACSNAKNWQKALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            C N K   KA++ +  + +   L+   +   A+I  LC  DQ+     +   M   GL 
Sbjct: 458 LCKN-KLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLV 516

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           P+   Y+ L+    ++ +V   L L  +  E GV
Sbjct: 517 PDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGV 550



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 146/352 (41%), Gaps = 47/352 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN LI    + G++ + ++   +M++ GL      Y       CK +  +++A +F+  
Sbjct: 205 TYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCK-EDMMQQALKFYVD 263

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN    T+  L+       +   AF++   + + G++ +   YT LI      
Sbjct: 264 MRRLGLVPNE--HTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDV 321

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            ++    E+F +MV AG+ PN+ +Y ALI G  KA  + +A      M+ + +KPD +++
Sbjct: 322 ERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLY 381

Query: 201 NALI-TACG---------------QSGAVDRAFDVLAEMNAEVHPVDPDH---------- 234
              I + CG               + G     F     M+A     +P            
Sbjct: 382 GTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLE 441

Query: 235 -------ITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWE 286
                  +T   L+        V +A + +  I + + ++    +YT  I+   +    E
Sbjct: 442 LDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVE 501

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
            A ++++ M +KG++PD    ++LID     G V  A  +  +    G+  G
Sbjct: 502 AATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVESG 553


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 167/340 (49%), Gaps = 3/340 (0%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           L +    K   +LY  +I    +S  +D+    F+EMV+ G  P  + +  L+     + 
Sbjct: 84  LTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSS 143

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
              + +  +   + K V  D   F  +I  C ++G ++++FD+L E+        P+ + 
Sbjct: 144 SFNQWWCFFNESKIK-VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELRE--FGFSPNVVI 200

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              L+  C   G++++A++++  + K+ +      YT+ I+   + G  +    +Y+ M 
Sbjct: 201 YTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQ 260

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           + GV P+    + +++     G+ + AF++  E + +G+S  I++Y++L+G         
Sbjct: 261 EHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKAN 320

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A ++ + MKS  + P + T N LI   C   +L K + +  D+KS GL P+ +TY++L+
Sbjct: 321 EANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLV 380

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
               RK D      ++ + +E G+ P+ V +  +I   +R
Sbjct: 381 SGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 169/378 (44%), Gaps = 4/378 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +F +++  C  + + E +F +L  ++E G   +  +YTTLI  C K G+++   ++F EM
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G+  N  TY  LI G  K G   + F  Y  M+   V P+   +N ++    + G  
Sbjct: 225 GKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRT 284

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             AF V  EM      V  + +T   L+       + + A +V   +  Y I      Y 
Sbjct: 285 KDAFKVFDEMRE--RGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYN 342

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+     G    A S+  D+  +G+ P  V  + L+      G    A ++++E + +
Sbjct: 343 TLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEER 402

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI    ++Y+ L+   + + N + A++L   M+ + L P V T + LI   C   Q+ + 
Sbjct: 403 GIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEA 462

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG- 452
             +   M    L PN + Y+ +++   ++      L L    +E  + PN+  +  +I  
Sbjct: 463 SRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRV 522

Query: 453 MC-SRRYEKARTLNEHVL 469
           +C  R+ ++A  L E ++
Sbjct: 523 LCKERKLKEAEDLVEKMI 540



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 156/344 (45%), Gaps = 6/344 (1%)

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            R F   PN  + T   L+  C    + E A  +   + + GL A+   YT LI    K+
Sbjct: 189 LREFGFSPNVVIYT--TLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKN 246

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G     FE++ +M   G+ PN++TY  +++   K G+   AF  +  MR + V  + V +
Sbjct: 247 GIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTY 306

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N LI    +    + A  V+ +M + V  ++P+ IT   L+    + G++ +A  + + +
Sbjct: 307 NTLIGGLCREMKANEANKVMDQMKSYV--INPNLITYNTLIDGFCSVGKLGKALSLCRDL 364

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +  +   Y + ++   + GD   A  +  +M ++G+ P +V  + LID    +  +
Sbjct: 365 KSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNM 424

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E A ++    +  G+   + +YS L+          +A  L++ M    L+P     N +
Sbjct: 425 ETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTM 484

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VAC-ERK 422
           I   C      + + +  DM+   L PN  +YS L+ V C ERK
Sbjct: 485 ILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERK 528



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 161/368 (43%), Gaps = 8/368 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMF 147
           P  + FN L++    S       Q      E+ +K    +Y+   +I  C ++G+++  F
Sbjct: 127 PGSNCFNNLLTFVVGSSSFN---QWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSF 183

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++  E+   G  PNV  Y  LIDGC K G++ KA   +  M    +  +   +  LI   
Sbjct: 184 DLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGL 243

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G   + F++  +M  + H V P+  T   +M      G+   A +V+  + +  +  
Sbjct: 244 FKNGIKKQGFEMYEKM--QEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSC 301

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   I    +      A  V D M    + P+ +  + LID     GK+  A  + 
Sbjct: 302 NIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLC 361

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++ K++G+S  +++Y+ L+       +   A ++ + M+   +KP+  T   LI      
Sbjct: 362 RDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARS 421

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           D +   +++ S M+ LGL P+  TYS+L+     K  +     L     E  + PN V++
Sbjct: 422 DNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIY 481

Query: 448 KC-IIGMC 454
              I+G C
Sbjct: 482 NTMILGYC 489



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 159/358 (44%), Gaps = 15/358 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVY----HARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           ++G I +  DL  +M + GL+  +  Y    H  F N  K     K+ F  ++ +     
Sbjct: 210 KKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIK-----KQGFEMYEKMQEHGV 264

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+N +M+       ++ AF+V   ++E G+  +   Y TLI    +  K +   +
Sbjct: 265 FPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANK 324

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  +M +  I PN+ TY  LIDG    G++ KA      ++S+ + P  V +N L++   
Sbjct: 325 VMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFC 384

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G    A  ++ EM  E   + P  +T   L+   A +  ++ A ++   + +  +   
Sbjct: 385 RKGDTSGAAKMVKEM--EERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPD 442

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y++ I+     G    A  ++  M +K + P+EV  + +I      G    A  + +
Sbjct: 443 VHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFR 502

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           + + + ++  + SYS L+      +  ++A +L E M    + P+ +  N +  A  D
Sbjct: 503 DMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDTICNLISRAKTD 560



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 124/281 (44%), Gaps = 45/281 (16%)

Query: 23  HDVSEQLHSYN----RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-- 76
           H V   L++YN    +L + GR  +   + ++M  +G+      Y+     +C+  KA  
Sbjct: 262 HGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANE 321

Query: 77  ---IKEAFRFFKLVPN---------------------------------PTLSTFNMLMS 100
              + +  + + + PN                                 P+L T+N+L+S
Sbjct: 322 ANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVS 381

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
                 D+ GA ++++ ++E G+K     YT LI T A+S  ++   ++   M   G+ P
Sbjct: 382 GFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVP 441

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           +VHTY  LI G    GQ+ +A   +  M  K ++P+ V++N +I    + G+  RA  + 
Sbjct: 442 DVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLF 501

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRARE-VYKMI 260
            +M  E   + P+  +   L++      ++  A + V KMI
Sbjct: 502 RDM--EEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMI 540


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 200/423 (47%), Gaps = 5/423 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTL 92
            IR G+I    +L ++M RKGL     V+ +    +C + +       F ++     P  
Sbjct: 171 FIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDS 230

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+N +++  + S   + A ++L  + + G   +   Y T++    K+ +V+    +  +
Sbjct: 231 VTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQ 290

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV  G  P+V +Y  +I+G  K  QV +A      M  +  +P+ + +  L+    + G 
Sbjct: 291 MVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGD 350

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A +++ +M    +   P+ IT   +M        ++RA +V +M+ +         Y
Sbjct: 351 LDGAVELVRKMTERGY--RPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINY 408

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +  I+   + G    A  + + M ++G  PD   LS LID    A  +++A E+L+ +  
Sbjct: 409 STIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIG 468

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
              +  +++YS L+ A   AK   +A    + M   +  P V T N+++  LC   ++  
Sbjct: 469 MDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIND 528

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
              +   M++ G+ P+ +TYSI++ +  + ++++    +L + KE   +P++V +  +I 
Sbjct: 529 AFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALIN 588

Query: 452 GMC 454
           G+C
Sbjct: 589 GLC 591



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 194/402 (48%), Gaps = 8/402 (1%)

Query: 75   KAIKEAFRFF--KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            K  K+A + +  KL  +P + TF +L+     + D   A+++L+ +   G+  +  L+  
Sbjct: 858  KRPKDALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNV 917

Query: 133  LITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            +I     + K+D+  E+F EM  +G   P+V TY  ++D   K+G+V  A      M SK
Sbjct: 918  VIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSK 977

Query: 192  NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
               P+ V +++L+    ++G +D A  +L  M        P+ +T   ++      G++D
Sbjct: 978  GCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRS--GCSPNIVTYNTIIDGHCKLGRID 1035

Query: 252  RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
             A  + + +     +     YT+ ++   + G  E A  + + M +KG +P+    ++L+
Sbjct: 1036 EAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLL 1095

Query: 312  DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
            D      +VE A ++L     +G    ++SY++++     A    + + L E M S    
Sbjct: 1096 DMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCV 1155

Query: 372  PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLM 430
            P + T N +I A+C   ++    E+ + ++  G  PN +TY+ L+   C+ +   +   +
Sbjct: 1156 PDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL 1215

Query: 431  LLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLS 470
            L    ++ G  P+++ +  +I G+C S+R ++A  L   +LS
Sbjct: 1216 LREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLS 1257



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 168/355 (47%), Gaps = 10/355 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+N +M V     D E A QVL+++ + G   D   Y+T+I+   K+GK+    ++
Sbjct: 368 PNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDL 427

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M+  G  P+V     LID   KA  +  A     +    +  PD V ++ LI A  +
Sbjct: 428 LEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCK 487

Query: 210 SGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           +  +  A    DV+ +         PD +T  +++     + +++ A  ++  +    + 
Sbjct: 488 AKRLPEAESWLDVMVKNRCY-----PDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVM 542

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+I I+   +  + + A  + + M +   +PD V  SALI+    AG V+ AF++
Sbjct: 543 PDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDV 602

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            QE    G +  +++Y++L+         ++A E+ E M+     P   T   LI  LC+
Sbjct: 603 FQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCN 662

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS--QAKEDG 439
             +L +   VL +MK  G  P+ +TY  LL A ++ +++E+   LL   +A E+G
Sbjct: 663 ASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATEEG 717



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 177/402 (44%), Gaps = 16/402 (3%)

Query: 26   SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
            S  + +YN +I    + GRI E   LLE+M   G       Y       CK  KA ++A 
Sbjct: 1015 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKA-EDAI 1073

Query: 82   RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               +++      P L T+N L+ +     + E A Q+L  + + G   +   Y T+I   
Sbjct: 1074 GLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 1133

Query: 138  AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
             K+ KV     +  +M++    P++ T+  +ID   K  +V  A+  + +++     P+ 
Sbjct: 1134 CKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNL 1193

Query: 198  VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
            V +N+L+    +S   D+A  +L EM  +     PD IT   ++     + +VDRA +++
Sbjct: 1194 VTYNSLVHGLCKSRRFDQAEYLLREMTRK-QGCSPDIITYNTVIDGLCKSKRVDRAYKLF 1252

Query: 258  KMIHKYNIKGTPEVYTIAINCCSQTGDWEF---ACSVYDDMTKKGVIPDEVFLSALIDFA 314
              +    +      Y+I I   S    W F   A +V + M K G  P  +    LID  
Sbjct: 1253 LQMLSDGLAPDDVTYSIVI---SSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGF 1309

Query: 315  GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               G ++ A EILQ   ++G    ++++S  +   S     ++A EL E M    L P  
Sbjct: 1310 CKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDT 1369

Query: 375  STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
             T N L+   CD       +++   M+  G  P+  TY+ L+
Sbjct: 1370 VTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV 1411



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 100/445 (22%), Positives = 201/445 (45%), Gaps = 13/445 (2%)

Query: 23   HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            H V + +  +N +I+      ++   ++L ++ME  G    D   ++   +       + 
Sbjct: 906  HGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVD 965

Query: 79   EAFRFFKLVPN----PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A R  + + +    P + T++ +L  +C + K  E A  +L+ +  +G   +   Y T+
Sbjct: 966  DACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDE-ATALLQRMTRSGCSPNIVTYNTI 1024

Query: 134  ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
            I    K G++D  + +  EMV+ G +PNV TY  L+D   K G+   A G   +M  K  
Sbjct: 1025 IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGY 1084

Query: 194  KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
             P+   +N+L+    +   V+RA  +L+ M  +     P+ ++   ++     A +V   
Sbjct: 1085 VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQK--GCVPNVVSYNTVIAGLCKATKVHEG 1142

Query: 254  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
              + + +   N       +   I+   +T   + A  +++ + + G  P+ V  ++L+  
Sbjct: 1143 VLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHG 1202

Query: 314  AGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               + + + A  +L+E  + QG S  II+Y++++     +K   +A +L+  M S  L P
Sbjct: 1203 LCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAP 1262

Query: 373  TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
               T + +I++LC    + +   VL  M   G  P  ITY  L+    +  +++  L +L
Sbjct: 1263 DDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEIL 1322

Query: 433  SQAKEDGVIPNLVMFKCIIGMCSRR 457
                  G  P++V F   I   S+R
Sbjct: 1323 QLLLSKGSYPDVVTFSIFIDWLSKR 1347



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 175/410 (42%), Gaps = 46/410 (11%)

Query: 28   QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
             L +YN L+    ++  +     LL  M +KG +     Y+     +CK+ K  +     
Sbjct: 1087 NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLL 1146

Query: 84   FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +++ N   P + TFN ++     +   + A+++  L+QE+G   +   Y +L+    KS
Sbjct: 1147 EQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKS 1206

Query: 141  GKVDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
             + D    +  EM    G  P++ TY  +IDG  K+ +V +A+  +  M S  + PD V 
Sbjct: 1207 RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVT 1266

Query: 200  FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
            ++ +I++  +   +D A +VL  M    +  DP  IT G L+      G +D+A E+ ++
Sbjct: 1267 YSIVISSLCKWRFMDEANNVLELMLK--NGFDPGAITYGTLIDGFCKTGNLDKALEILQL 1324

Query: 260  IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
                                               +  KG  PD V  S  ID+    G+
Sbjct: 1325 -----------------------------------LLSKGSYPDVVTFSIFIDWLSKRGR 1349

Query: 320  VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
            +  A E+L+     G+    ++Y++L+    +A   + A++L+E M+    +P  +T   
Sbjct: 1350 LRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTT 1409

Query: 380  LITALCDGDQLPKTM-EVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            L+  L D       + EV   M   G   N    S L  + E + DV +G
Sbjct: 1410 LVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLG 1459



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 181/423 (42%), Gaps = 8/423 (1%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            L + G++ E   LL+ M R G       Y+      CK  + I EA+   + + +    P
Sbjct: 993  LCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGR-IDEAYHLLEEMVDGGCQP 1051

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
             + T+ +L+        +E A  ++ ++ E G   +   Y +L+    K  +V+   ++ 
Sbjct: 1052 NVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLL 1111

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
              M+  G  PNV +Y  +I G  KA +V +       M S N  PD V FN +I A  ++
Sbjct: 1112 SSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKT 1171

Query: 211  GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTP 269
              VD A+++   +        P+ +T  +L+     + + D+A  + + M  K       
Sbjct: 1172 YRVDIAYELFNLIQES--GCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDI 1229

Query: 270  EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
              Y   I+   ++   + A  ++  M   G+ PD+V  S +I        ++ A  +L+ 
Sbjct: 1230 ITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLEL 1289

Query: 330  AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                G   G I+Y +L+       N  KALE+ + + S    P V T +  I  L    +
Sbjct: 1290 MLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR 1349

Query: 390  LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
            L +  E+L  M   GL P+T+TY+ LL         E  + L    ++ G  P+   +  
Sbjct: 1350 LRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTT 1409

Query: 450  IIG 452
            ++G
Sbjct: 1410 LVG 1412



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 107/491 (21%), Positives = 213/491 (43%), Gaps = 25/491 (5%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N L++V   +     A  + R   E     D   Y+TLI+   ++GK+   +E+F EM  
Sbjct: 130 NCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNR 189

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G++ +   + +++ G   AGQ + A   +  M SK   PD V +N +I    +S  +D 
Sbjct: 190 KGLKAHAGVHKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDD 248

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VY 272
           A  +L EM    +   P+  +   ++     A +V+ A     ++ +   +G P     Y
Sbjct: 249 AIRLLEEMVD--NGFAPNVFSYNTVLHGFCKANRVENA---LWLLEQMVTRGCPPDVVSY 303

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  IN   +    + AC V D M ++G  P+ +    L+D     G ++ A E++++   
Sbjct: 304 TTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE 363

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G     I+Y+++M       + ++A ++ + M      P     + +I+  C   +L +
Sbjct: 364 RGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLRE 423

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
             ++L  M   G  P+    S L+ A  +   ++    LL  +      P++V +  +I 
Sbjct: 424 AHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIH 483

Query: 452 GMC-SRRYEKARTLNE---------HVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIP 500
            +C ++R  +A +  +          V+++NS    + +++  + A +++     AG +P
Sbjct: 484 ALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMP 543

Query: 501 TVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSL 557
            V   S V+       N D   +++E +  +          +LI+G    G  D +AF +
Sbjct: 544 DVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVD-KAFDV 602

Query: 558 LEEAASFGIVP 568
            +E    G  P
Sbjct: 603 FQEMLGCGCAP 613



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 180/395 (45%), Gaps = 28/395 (7%)

Query: 195  PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
            P+   F  LI    ++G +  A+++L EM    H V  + I    ++K   +A ++D A 
Sbjct: 875  PNMFTFTILIHGLCRAGDIGTAYELLKEMPR--HGVPQNVILHNVVIKGLCSARKLDSAL 932

Query: 255  EVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
            E++K + +      P+V+T +  ++   ++G  + AC + +DM  KG  P+ V  S+L+ 
Sbjct: 933  ELFKEMEESG-SCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLH 991

Query: 313  FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                AGK++ A  +LQ     G S  I++Y++++          +A  L E M     +P
Sbjct: 992  GLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQP 1051

Query: 373  TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
             V T   L+ A C   +    + ++  M   G  PN  TY+ LL    +KD+VE    LL
Sbjct: 1052 NVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLL 1111

Query: 433  SQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM-- 488
            S   + G +PN+V +  +I G+C + +  +   L E +LS N+  P I    T +  M  
Sbjct: 1112 SSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLS-NNCVPDIVTFNTIIDAMCK 1170

Query: 489  VYREAIV---------AGTIPTVEVVSKVLGCLQLPYNADIRERLVENL----GVSADAL 535
             YR  I          +G  P +   + ++  L      D  E L+  +    G S D +
Sbjct: 1171 TYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDII 1230

Query: 536  KRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVP 568
              +   ++IDG    +   RA+ L  +  S G+ P
Sbjct: 1231 TYN---TVIDGLCKSKRVDRAYKLFLQMLSDGLAP 1262



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 161/382 (42%), Gaps = 32/382 (8%)

Query: 26   SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
            S  + +YN +I    +  R+     L   M   GL   D  Y     ++CK  + + EA 
Sbjct: 1226 SPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCK-WRFMDEAN 1284

Query: 82   RFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               +L+     +P   T+  L+     + + + A ++L+L+   G   D   ++  I   
Sbjct: 1285 NVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWL 1344

Query: 138  AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            +K G++    E+   M+ AG+ P+  TY  L+ G   A     A   + +MR    +PD 
Sbjct: 1345 SKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDN 1404

Query: 198  VVFNALI------------TACGQSGAVDRAFDVLAEMNAEVHP---VDPDHITIGALMK 242
              +  L+             A      VD  F +  E+++++     V+ D     A++ 
Sbjct: 1405 ATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLGCAIVD 1464

Query: 243  ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
                 G    AR+V++ + + N+     +++  +         E A  ++  M  +GV P
Sbjct: 1465 MFGKCGSPQDARKVFEGMDQRNVV----LWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEP 1520

Query: 303  DEVFLSALIDFAGHAGKVEAAF-EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
            D V   +L+    HAG ++AA  E +  +++ G+  G+  +S ++          +A +L
Sbjct: 1521 DAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDL 1580

Query: 362  YEHMKSIKLKPTVSTMNALITA 383
               M  +  KP+ +T N L++A
Sbjct: 1581 ---MLGMPCKPSAATWNCLLSA 1599



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 143/341 (41%), Gaps = 22/341 (6%)

Query: 149 VFHEMVNA--GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           VF E      G +  +     L++   KA Q ++A   +          D V ++ LI+ 
Sbjct: 111 VFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISG 170

Query: 207 CGQSGAVDRAFDVLAEMN-------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
             ++G +  A+++  EMN       A VH          ++++   +AGQ   A   ++ 
Sbjct: 171 FIRAGKILPAYELFDEMNRKGLKAHAGVHK---------SILRGLCDAGQCSDAVLHFRE 221

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + K         Y   IN  S++   + A  + ++M   G  P+    + ++     A +
Sbjct: 222 MSK-TCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANR 280

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           VE A  +L++   +G    ++SY++++          +A  + + M     +P V T   
Sbjct: 281 VENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGT 340

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           L+   C    L   +E++  M   G  PN ITY+ ++    R++D+E    +L    + G
Sbjct: 341 LVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTG 400

Query: 440 VIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI 478
             P+ + +  II G C + +  +A  L E ++     RP +
Sbjct: 401 CPPDAINYSTIISGFCKAGKLREAHDLLEQMIR-RGCRPDV 440


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 179/408 (43%), Gaps = 38/408 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN ++     ++ +  A  +L  +    +  D   +TTL+    + G ++A   +
Sbjct: 194 PDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRL 253

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M   G  P   T   LI+G  K G+V  A G      +   +PDRV F+  +    Q
Sbjct: 254 KARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQ 313

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR--------------- 254
           +G VD A  VL  M  E    +PD  T   ++    N G+++ A+               
Sbjct: 314 NGHVDHALKVLGLMLQE--GCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDT 371

Query: 255 -----------------EVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDD 294
                            E   +  +  +KG +P VYT  I IN   + GD   A  ++++
Sbjct: 372 TTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEE 431

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G  PDEV  + LID    +GK+  A ++L+E +  G     ++Y++++      + 
Sbjct: 432 MKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRR 491

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++A E+++ M    +     T N LI  LC+ +++    E++  M S GL PN +TY+ 
Sbjct: 492 IEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNS 551

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKA 461
           +L    ++ ++     +L     +G   ++V +  +I G+C  R  +A
Sbjct: 552 ILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQA 599



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 173/386 (44%), Gaps = 39/386 (10%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G++A+ ++Y  L+T  A+  K+  +   + EM + GIEP+V T+  +ID   +A Q   A
Sbjct: 156 GVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTA 215

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF------------------------ 217
                 M S +V PD   F  L+    + G+++ A                         
Sbjct: 216 VLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLING 275

Query: 218 --------DVLAEMNAEV-HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                   D L  +  E+    +PD +T    +      G VD A +V  ++ +   +  
Sbjct: 276 YCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCE-- 333

Query: 269 PEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+VYT +  INC    G+ E A  + + M   G +PD    + LI       ++E A ++
Sbjct: 334 PDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDL 393

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            +E   +G+S  + +++ L+ A     +   A+ L+E MKS    P   T N LI  LC 
Sbjct: 394 ARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCS 453

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L K +++L +M+  G   +T+TY+ ++    ++  +E    +  Q    G+  N + 
Sbjct: 454 SGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAIT 513

Query: 447 FKCII-GMC-SRRYEKARTLNEHVLS 470
           F  +I G+C + R + A  L + ++S
Sbjct: 514 FNTLIDGLCNAERIDDAAELVDQMIS 539



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 155/354 (43%), Gaps = 8/354 (2%)

Query: 108 SEGAFQVLRLV----QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GIEPNV 162
           + GAF +++++    +  G +    L  + I + A+    D  F++    ++  G++ N 
Sbjct: 102 TAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLFDDAFDLVSNQLDMFGVQANT 161

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
             Y  L+   A+  ++     AY  M S+ ++PD V FN +I A  ++     A  +L E
Sbjct: 162 EVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEE 221

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M++    V PD  T   LM+     G ++ A  +   + +     T     + IN   + 
Sbjct: 222 MSS--CDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKL 279

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G    A          G  PD V  S  ++     G V+ A ++L     +G    + +Y
Sbjct: 280 GRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTY 339

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           S+++    N    ++A  +   M      P  +T N LI ALC  +QL + +++  ++  
Sbjct: 340 STVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTV 399

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
            GL PN  T++IL+ A  +  D  + + L  + K  G  P+ V +  +I  +CS
Sbjct: 400 KGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCS 453



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 174/385 (45%), Gaps = 16/385 (4%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           Q+ I + F        P   TF+  ++    +   + A +VL L+ + G + D   Y+T+
Sbjct: 290 QQEIADGFE-------PDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTV 342

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I     +G+++    + ++MV++G  P+  T+  LI       Q+ +A      +  K +
Sbjct: 343 INCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGL 402

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+   FN LI A  + G    A  +  EM +      PD +T   L+    ++G++ +A
Sbjct: 403 SPNVYTFNILINALCKVGDPHLAVRLFEEMKS--SGCTPDEVTYNILIDNLCSSGKLAKA 460

Query: 254 REVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
            ++ K   +  + G P+    Y   I+   +    E A  V+D M   G+  + +  + L
Sbjct: 461 LDLLK---EMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTL 517

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID   +A +++ A E++ +  ++G+    ++Y+S++       N  KA ++ + M +   
Sbjct: 518 IDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGF 577

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           +  V T   LI  LC   +    +++L  M+  G+ P    Y+ ++ +  R ++    L 
Sbjct: 578 EVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALS 637

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMC 454
           L  +  E G  P+   +K +  G+C
Sbjct: 638 LFREMTEVGGPPDAFTYKIVFRGLC 662



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 163/381 (42%), Gaps = 32/381 (8%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           + R   + P R V+  +I   G +GA D    ++ EM  E H V    +   + + + A 
Sbjct: 80  LARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQ--SFIGSYAR 137

Query: 247 AGQVDRARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
               D A + V   +  + ++   EVY   +   ++    +   S Y +M+ +G+ PD V
Sbjct: 138 LQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVV 197

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + +ID    A +   A  +L+E  +  ++    ++++LM       + + AL L   M
Sbjct: 198 TFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARM 257

Query: 366 KSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
             +   PT  T+N LI   C     GD L    + ++D    G  P+ +T+S  +    +
Sbjct: 258 SEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIAD----GFEPDRVTFSTFVNGLCQ 313

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTLNEHVL---------S 470
              V+  L +L    ++G  P++  +  +I  +C+    E+A+ +   ++         +
Sbjct: 314 NGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTT 373

Query: 471 FNSGRPQI--ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
           FN+    +  EN+    AL + RE  V G  P V   + ++  L    +  +  RL E +
Sbjct: 374 FNTLIVALCTENQLEE-ALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEM 432

Query: 529 ---GVSADALKRS----NLCS 542
              G + D +  +    NLCS
Sbjct: 433 KSSGCTPDEVTYNILIDNLCS 453



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 17/248 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    ++ RI E  ++ + M+  G+      ++     +C +++    A    ++
Sbjct: 478 TYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQM 537

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +     P   T+N +++      +   A  +L+ +   G + D   Y TLI    K+ + 
Sbjct: 538 ISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRT 597

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD----RVV 199
            A  ++   M   G++P    Y  +I    +      A   +  M      PD    ++V
Sbjct: 598 QAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIV 657

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR-AREVYK 258
           F  L   C   G +  AFD L EM    +   P+  +   L +   N G  D   R +  
Sbjct: 658 FRGL---CRGGGPIKEAFDFLVEMAD--NGFIPEFSSFRMLAEGLLNLGMDDYLIRAIEL 712

Query: 259 MIHKYNIK 266
           ++ K N +
Sbjct: 713 IVEKANFR 720


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 198/420 (47%), Gaps = 11/420 (2%)

Query: 38  QGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAF----RFFKLVPNPTL 92
           +GR+SE + L++ M E K   D+  V  +   N    +  + EA     R  +    P  
Sbjct: 182 EGRVSEAVALVDRMVEMKQRPDL--VTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDE 239

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+  +++    S +S  A  + R ++E  +KA    Y+ +I +  K G  D    +F+E
Sbjct: 240 VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNE 299

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   GI+ +V TY +LI G    G+          M  +N+ PD V F+ALI    + G 
Sbjct: 300 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGK 359

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +  A ++  EM      + PD IT  +L+        +  A +++ ++     +     Y
Sbjct: 360 LLEAKELYNEMIT--RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTY 417

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +I IN   +    +    ++ +++ KG+IP+ +  + L+     +GK+ AA E+ QE  +
Sbjct: 418 SILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS 477

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +G+   +++Y  L+ G C N +   KALE++E M+  ++   +   N +I  +C+  ++ 
Sbjct: 478 RGVPPSVVTYGILLDGLCDNGE-LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVD 536

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               +   +   G+ P+ +TY++++    +K  +    ML  + KEDG  P+   +  +I
Sbjct: 537 DAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 596



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 212/468 (45%), Gaps = 21/468 (4%)

Query: 6   KNMLQFPYP-NGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
           K M+Q   P N K +N+    ++ L     L+    I+E     ++  R G++D+     
Sbjct: 28  KKMIQRLIPLNRKASNF----TQILEKGTSLLHYSSITEAKLSYKERLRNGIVDI----- 78

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
                  K   AI       +  P PT   FN L S  A +K  +      + ++  G++
Sbjct: 79  -------KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIE 131

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
            D    T +I    +  K+   F V       G EP+  T+  L++G    G+V++A   
Sbjct: 132 HDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVAL 191

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
              M     +PD V  + LI      G V  A  VL +   E +   PD +T G ++   
Sbjct: 192 VDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL-VLIDRMVE-YGFQPDEVTYGPVLNRL 249

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
             +G    A ++++ + + NIK +   Y+I I+   + G ++ A S++++M  KG+  D 
Sbjct: 250 CKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADV 309

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V  S+LI    + GK +   ++L+E   + I   ++++S+L+          +A ELY  
Sbjct: 310 VTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNE 369

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M +  + P   T N+LI   C  + L +  ++   M S G  P+ +TYSIL+ +  +   
Sbjct: 370 MITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKR 429

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKARTLNEHVLS 470
           V+ G+ L  +    G+IPN + +   ++G C S +   A+ L + ++S
Sbjct: 430 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS 477



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 197/438 (44%), Gaps = 16/438 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L  +GR+SE + L++ M   G    +  Y      +CKS  +   A   F+ +    +
Sbjct: 212 NGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS-ALALDLFRKMEERNI 270

Query: 93  STFNMLMSVCASSKDSEGAFQ-VLRLVQE---AGLKADCKLYTTLITTCAKSGKVDAMFE 148
               +  S+   S   +G+F   L L  E    G+KAD   Y++LI      GK D   +
Sbjct: 271 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK 330

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM+   I P+V T+ ALID   K G++ +A   Y  M ++ + PD + +N+LI    
Sbjct: 331 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 390

Query: 209 QSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH-KYN 264
           +   +  A   FD++     E     PD +T   L+ +   A +VD    +++ I  K  
Sbjct: 391 KENCLHEANQMFDLMVSKGCE-----PDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 445

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           I  T    T+ +  C Q+G    A  ++ +M  +GV P  V    L+D     G++  A 
Sbjct: 446 IPNTITYNTLVLGFC-QSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 504

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           EI ++ +   +++GI  Y+ ++    NA     A  L+  +    +KP V T N +I  L
Sbjct: 505 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 564

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C    L +   +   MK  G  P+  TY+IL+ A      +   + L+ + K  G   + 
Sbjct: 565 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADS 624

Query: 445 VMFKCIIGMCS-RRYEKA 461
              K +I M S RR +K+
Sbjct: 625 STIKMVIDMLSDRRLDKS 642


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 184/395 (46%), Gaps = 19/395 (4%)

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           ++KA + A R  + V +P + TFN ++S          A  V + ++  GL      Y +
Sbjct: 175 AEKAFRSALR--RRV-SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNS 231

Query: 133 LITTCAKSGKVDAMFEV---FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           LI    K G    M+ V     EMV AGI P   T+G LI+G  K    A A   +  M+
Sbjct: 232 LIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMK 291

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            + +    V +N+LI+     G V+    ++ EM  E   + P+ IT G ++K     G 
Sbjct: 292 QQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM--EDLGLSPNEITFGCVLKGFCKKGM 349

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +  A +    + + N++    +Y I I+   + G  E A +V + M KKG+ P+    + 
Sbjct: 350 MADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNC 409

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     +G   +A  +L E K +GI   +++Y+ L+GA       +KA++L + M  + 
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           L+P   T N +I   CD   +    E+ + M+      N +TY++ +     K   ++G 
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI-----KYFCQIGK 524

Query: 430 M-----LLSQAKEDGVIPNLVMFKCII-GMCSRRY 458
           M     LL++  +  ++PN + ++ I  GM  + Y
Sbjct: 525 MDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGY 559



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 171/404 (42%), Gaps = 53/404 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---- 76
           VS  ++++N +I    R G++ +  D+ +D++  GL      Y++     CK   A    
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 77  -----IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
                +KE     +   +PT  TF +L++    + ++  A +V   +++ G+ A    Y 
Sbjct: 247 HVDMLLKE---MVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYN 303

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           +LI+     GKV+   ++  EM + G+ PN  T+G ++ G  K G +A A      M  +
Sbjct: 304 SLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTER 363

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           NV+PD V++N LI    + G ++ A  V   M  +   + P+  T   L+   + +G   
Sbjct: 364 NVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKK--GISPNVTTYNCLITGFSRSGDWR 421

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A  +   + +  I+     Y + I      G+   A  + D+M++ G+ P+ +  + +I
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                 G +++A+EI                                      M+  + +
Sbjct: 482 QGFCDKGNIKSAYEI-----------------------------------RTRMEKCRKR 506

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             V T N  I   C   ++ +  ++L++M    L PN ITY  +
Sbjct: 507 ANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 14/147 (9%)

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           S ++L+     AK    A + +      ++ P + T N +I+ LC   QL K  +V  D+
Sbjct: 158 SVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDI 217

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGL---MLLSQAKEDGVIPNLVMFKCII-GMCS- 455
           K+ GL P+  TY+ L+    +K          MLL +  E G+ P  V F  +I G C  
Sbjct: 218 KAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKN 277

Query: 456 -------RRYE--KARTLNEHVLSFNS 473
                  R +E  K + +   V+++NS
Sbjct: 278 SNTAAAVRVFEEMKQQGIAASVVTYNS 304


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 191/406 (47%), Gaps = 36/406 (8%)

Query: 54  KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113
           KGL    +V  A  F+     K + + FR  ++       ++  L++      ++  A Q
Sbjct: 141 KGLCLKGQVKKALHFH----DKLLAQGFRLDQV-------SYGTLINGVCKIGETRAAIQ 189

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           +LR +     + +  +Y T+I    K   V     +F EM   GI  NV TY A+I G  
Sbjct: 190 LLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFC 249

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
             G++ +A G    M  K + PD  ++N L+ A  + G V  A +VLA +      + P+
Sbjct: 250 IVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTC--LKPN 307

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKG----TPEV--YTIAINCCSQTGDWEF 287
            IT   L+   A               H +N  G    TP+V  Y I IN   +    E 
Sbjct: 308 VITYNTLIDGYAK--------------HVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEE 353

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM- 346
           A ++Y +M +K ++P+ V  ++LID    +G++  A++++ E  ++G    +I+Y+SL+ 
Sbjct: 354 ALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLIN 413

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKSLGL 405
           G C N +   KA+ L   MK   ++P + T+N L+   LC G +L     +  D+   G 
Sbjct: 414 GLCKNGQ-LDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGY 472

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            PN  TY+I++    ++  ++    L S+ ++ G  PN + FK II
Sbjct: 473 HPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIII 518



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/440 (20%), Positives = 181/440 (41%), Gaps = 36/440 (8%)

Query: 64  HARFFNVCKSQKAIKEA-FRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           H+ F +   S + + +A F+F +++     P +  FN ++   A  K       + R ++
Sbjct: 31  HSHFHSRPPSFENVDDALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLE 90

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
              ++ D      LI      G+++  F V  +++  G +P+  T   LI G    GQV 
Sbjct: 91  LKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVK 150

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           KA   +  + ++  + D+V +  LI    + G    A  +L  ++  +   +P+ +    
Sbjct: 151 KALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRL--TEPNVVMYNT 208

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           ++        V  A  ++  +    I      Y+  I+     G    A    ++M  K 
Sbjct: 209 IIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKA 268

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS--------------L 345
           + PD    + L+D     GKV+ A  +L       +   +I+Y++              L
Sbjct: 269 INPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGL 328

Query: 346 MGACSNA-------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           MG   +              K  ++AL LY+ M    + P   T N+LI  LC   ++  
Sbjct: 329 MGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISY 388

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             +++ +M   G   N ITY+ L+    +   ++  + L+++ K+ G+ P++     ++ 
Sbjct: 389 AWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLH 448

Query: 453 --MC-SRRYEKARTLNEHVL 469
             +C  +R + A+ L + +L
Sbjct: 449 GLLCKGKRLKNAQGLFQDLL 468



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 152/354 (42%), Gaps = 16/354 (4%)

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
           E+  + PD  T+  L+    + GQ++ A  V   I K+  +      T  I      G  
Sbjct: 90  ELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQV 149

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A   +D +  +G   D+V    LI+     G+  AA ++L+    +     ++ Y+++
Sbjct: 150 KKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTI 209

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +      K   +A  L+  M    +   V T +A+I   C   +L + +  L++M    +
Sbjct: 210 IDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAI 269

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL- 464
            P+   Y+ L+ A  ++  V+    +L+   +  + PN++ +  +I   ++    A  L 
Sbjct: 270 NPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLM 329

Query: 465 --NEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYN 517
                V S+N    ++ + K    AL +Y+E      +P     + ++  L    ++ Y 
Sbjct: 330 GVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYA 389

Query: 518 ADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP 568
            D+ + +  + G  A+ +  +   SLI+G    G+ D +A +L+ +    GI P
Sbjct: 390 WDLIDEM-HDRGHHANVITYN---SLINGLCKNGQLD-KAIALINKMKDQGIQP 438



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 6/199 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           NRL +  R+ E ++L ++M +K ++     Y++    +CKS + I  A+     + +   
Sbjct: 343 NRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGR-ISYAWDLIDEMHDRGH 401

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMF 147
              + T+N L++    +   + A  ++  +++ G++ D      L+      GK +    
Sbjct: 402 HANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQ 461

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F ++++ G  PNV+TY  +I G  K G + +A+     M      P+ + F  +I A 
Sbjct: 462 GLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICAL 521

Query: 208 GQSGAVDRAFDVLAEMNAE 226
            + G  D+A  +L EM A 
Sbjct: 522 LEKGETDKAEKLLCEMIAR 540


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 174/402 (43%), Gaps = 37/402 (9%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K +    + TF  + S          A   L +++EAG+  +   Y  LI    KSG   
Sbjct: 136 KQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSGFDA 195

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              EV+  MV  GI P+V TY  L+    K   V         M ++ VKP+   +   I
Sbjct: 196 EAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICI 255

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
              GQ+   D A+ +L +M  E     PD +T   +++   +AG++  A++V+  +   +
Sbjct: 256 RVLGQAARFDEAYQILGKM--EDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASD 313

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            K     Y   ++ C  +GD +    +++ M   G   + V  +A++D     G+++ A 
Sbjct: 314 QKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEAL 373

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL----------------------- 361
            +  E K +GIS    SY+SL+     A  + +ALEL                       
Sbjct: 374 AVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYY 433

Query: 362 ------------YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
                       YEHMKS  + P V+  NA++++L    +L     V  ++K +G+ P+T
Sbjct: 434 GKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDT 493

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           ITY++++  C +    +  +   S   E G +P+++    +I
Sbjct: 494 ITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLI 535



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 180/408 (44%), Gaps = 41/408 (10%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P++ T+++LM      +D +    +L  ++  G+K +   YT  I    ++ + D  ++
Sbjct: 210 SPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQ 269

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M ++G +P+V T+  +I     AG+++ A   +  M++ + KPDRV +  L+  CG
Sbjct: 270 ILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLLDKCG 329

Query: 209 -----------------------------------QSGAVDRAFDVLAEMNAEVHPVDPD 233
                                              Q G +D A  V  EM  +   + P+
Sbjct: 330 DSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEK--GISPE 387

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSV 291
             +  +L+     A   DRA E++   H      +P  YT  + IN   ++G    A   
Sbjct: 388 QYSYNSLISGFLKADMFDRALELFN--HMNACGPSPNGYTHVLFINYYGKSGQSLKAIQR 445

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           Y+ M  KG++PD    +A++     +G++  A  +  E K+ G+S   I+Y+ ++  CS 
Sbjct: 446 YEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSK 505

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A    +A+  +  M      P V  +N+LI  L  G +  +  ++   +K + + P   T
Sbjct: 506 ASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGT 565

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           Y+ LL    R+  V+  + LL +       PNL+ +  ++   S+  E
Sbjct: 566 YNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGE 613



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 186/450 (41%), Gaps = 48/450 (10%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CKSQKA 76
           A  V   ++SY   IR      R  E   +L  ME  G    D V H     V C + + 
Sbjct: 241 ARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGC-KPDVVTHTVVIQVLCDAGRL 299

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
                 F+K+  +   P   T+  L+  C  S DS+   ++   +   G   +   YT +
Sbjct: 300 SDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAV 359

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    + G++D    VF EM   GI P  ++Y +LI G  KA    +A   +  M +   
Sbjct: 360 VDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNACGP 419

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+       I   G+SG   +A      M ++   + PD     A++ + A +G++  A
Sbjct: 420 SPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSK--GIVPDVAAANAVLSSLARSGRLGMA 477

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           + V+  +    +      YT+ I CCS+    + A + + DM + G +PD + L++LID 
Sbjct: 478 KRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDT 537

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               GK   A                               W+    L+  +K +K++PT
Sbjct: 538 LYKGGKGNEA-------------------------------WK----LFHQLKEMKIEPT 562

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
             T N L++ L    ++ + M +L +M      PN ITY+ +L    +  +V   + +L 
Sbjct: 563 NGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLY 622

Query: 434 QAKEDGVIPNLVMFKCII-GMC-SRRYEKA 461
              E G  P+L  +  ++ G+    R+E+A
Sbjct: 623 SMTEKGCTPDLSSYNTVMYGLIKEERFEEA 652



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 184/414 (44%), Gaps = 35/414 (8%)

Query: 25   VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
            VS +  SYN LIR       ID+ ED+                F   K            
Sbjct: 769  VSLKTGSYNSLIRGLVDENLIDIAEDL----------------FTEMK------------ 800

Query: 85   KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            +L   P   T+N+++     S   E   +V   +   G ++    Y T+I+   KS +++
Sbjct: 801  RLGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLE 860

Query: 145  AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               ++++ +++ G  P   TYG L+DG  KAG++  A   +  M     KP+  ++N L+
Sbjct: 861  QAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILL 920

Query: 205  TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                 +G  +    +  +M  +   ++PD  +   L+     AG+++     ++ + +  
Sbjct: 921  NGHRIAGNTENVCQIFEKMVEQ--GINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELG 978

Query: 265  IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            ++    +Y + I+   ++   E A  ++++M KKG++P+    ++LI   G AGK   A 
Sbjct: 979  LEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAA 1038

Query: 325  EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            ++ +E   +G    + +Y++L+   S + +   A   Y+ +        VS   ALI+ L
Sbjct: 1039 QMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAV-----GVSLKTALISGL 1093

Query: 385  CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
             D + +     + ++MK  G  P+  TY+++L A  +   +E  L +  +  ED
Sbjct: 1094 VDENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEIAED 1147



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 103/470 (21%), Positives = 186/470 (39%), Gaps = 22/470 (4%)

Query: 16   GKHANYAHDVSEQLHS--------YNRLI----RQGRISECIDLLEDMERKGLLDMDKVY 63
            GK     H + E  HS        YN ++    + G ++  I +L  M  KG       Y
Sbjct: 577  GKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSY 636

Query: 64   HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
            +   + + K ++  +EAFR F  +       +  L ++  S   +    + L  V+E  L
Sbjct: 637  NTVMYGLIKEER-FEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYIL 695

Query: 124  KADCKL----YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
            KADC      + +L+        V+   E    + + GI  N      LI    K  +  
Sbjct: 696  KADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKAL 755

Query: 180  KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            +A   +   +   V      +N+LI        +D A D+  EM  +     PD  T   
Sbjct: 756  EAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEM--KRLGCGPDEFTYNL 813

Query: 240  LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
            ++ A   + +++    V   +H+   + T   Y   I+   ++   E A  +Y ++  +G
Sbjct: 814  ILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEG 873

Query: 300  VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
              P       L+D    AGK+  A  +  E    G       Y+ L+     A N +   
Sbjct: 874  FSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVC 933

Query: 360  ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            +++E M    + P + +   LI  LC   +L   +     +  LGL P+ I Y++L+   
Sbjct: 934  QIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGL 993

Query: 420  ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE 466
             + + +E  + L ++ K+ G++PNL  +  +I   G   +  E A+   E
Sbjct: 994  GKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEE 1043



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 142/320 (44%), Gaps = 3/320 (0%)

Query: 97   MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
            ++  +C   K  E A Q+    +  G+      Y +LI        +D   ++F EM   
Sbjct: 744  LIRHLCKHKKALE-AHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRL 802

Query: 157  GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
            G  P+  TY  ++D   K+ ++ +       M  K  +   V +N +I+   +S  +++A
Sbjct: 803  GCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQA 862

Query: 217  FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             D+   + +E     P   T G L+     AG++  A  ++  + +Y  K    +Y I +
Sbjct: 863  IDLYYNLMSE--GFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILL 920

Query: 277  NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
            N     G+ E  C +++ M ++G+ PD    + LID    AG++       ++    G+ 
Sbjct: 921  NGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLE 980

Query: 337  VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
              +I Y+ L+     ++  ++A+ L+  MK   + P + T N+LI  L    +  +  ++
Sbjct: 981  PDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQM 1040

Query: 397  LSDMKSLGLCPNTITYSILL 416
              ++   G  PN  TY+ L+
Sbjct: 1041 YEELLIKGWKPNVFTYNALI 1060



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/435 (19%), Positives = 174/435 (40%), Gaps = 9/435 (2%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           Y + K      DV+      + L R GR+     +  +++  G+   D + +      C 
Sbjct: 446 YEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGV-SPDTITYTMMIKCCS 504

Query: 73  SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
                 EA  FF  +      P +   N L+           A+++   ++E  ++    
Sbjct: 505 KASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNG 564

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            Y TL++   + GKV  +  +  EM ++   PN+ TY  ++D  +K G+V  A G    M
Sbjct: 565 TYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSM 624

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
             K   PD   +N ++    +    + AF +  +M      + PD+ T+  ++ +    G
Sbjct: 625 TEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMK---KILAPDYATLCTILPSFVKNG 681

Query: 249 QVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
            +  A   V + I K +       +   +         E +    +++  +G++ ++ FL
Sbjct: 682 LMKEALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFL 741

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
             LI       K   A ++  + K  G+S+   SY+SL+    +      A +L+  MK 
Sbjct: 742 CPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKR 801

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
           +   P   T N ++ A+    ++ + + V ++M   G     +TY+ ++    +   +E 
Sbjct: 802 LGCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQ 861

Query: 428 GLMLLSQAKEDGVIP 442
            + L      +G  P
Sbjct: 862 AIDLYYNLMSEGFSP 876



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 39/235 (16%)

Query: 32   YNRLIRQGRIS----ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-- 85
            YN L+   RI+        + E M  +G+    K Y      +C + + + +   +F+  
Sbjct: 916  YNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGR-LNDGLSYFRQL 974

Query: 86   --LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
              L   P L  +N+L+     S+  E A  +   +++ G+  +   Y +LI    K+GK 
Sbjct: 975  LELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKA 1034

Query: 144  DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-----GI----------- 187
                +++ E++  G +PNV TY ALI G + +G    A+ AY     G+           
Sbjct: 1035 SEAAQMYEELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTALISGLV 1094

Query: 188  --------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
                          M+ +   PD+  +N ++ A G+S  ++    V  E+  +++
Sbjct: 1095 DENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEIAEDLN 1149



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           V + L +A G + A++  F   A     VH  +  +  +  LM+A    G+V    +V+ 
Sbjct: 78  VVHMLRSAPGPAEALE-LFTAAARQPTAVHTTESCNYML-ELMRA---HGRVGDMAQVFD 132

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
           ++ K  +K     +    +     G    A      M + G+  +    + LI F   +G
Sbjct: 133 LMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSG 192

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
               A E+ +     GIS  + +YS LM +    ++    L L   M++  +KP V +  
Sbjct: 193 FDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYT 252

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACE 420
             I  L    +  +  ++L  M+  G  P+ +T+++++ V C+
Sbjct: 253 ICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCD 295


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 188/397 (47%), Gaps = 12/397 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + GR+ +   LL++M R G+  ++   +    +    QK         K + +    PT+
Sbjct: 145 KAGRMDDARRLLDEMPRHGV-KLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTV 203

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+ +L+   +++ D      V   ++   +  D   Y+ +I    ++G V    EVF E
Sbjct: 204 GTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDE 263

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            V  GIEPN  TYGALI+G  K GQ+  A      M+ + V  ++++FN +I    + G 
Sbjct: 264 CVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGM 323

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           VD+A ++ A M  E   +  D  T   L        +++ A+++  ++ +  ++     Y
Sbjct: 324 VDKALEIKAVM--ERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSY 381

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  I+  S+ GD   A  ++ DM  KG  P  V  + +ID    +G +  A    +E + 
Sbjct: 382 TTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEK 441

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +G+   + +Y++L+ G C N K    AL L+E MK    KP V    ALI+ L    +  
Sbjct: 442 KGLVPDVYTYAALVHGHCVNGK-VDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSE 500

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVAC---ERKDDV 425
           +  +   +M + GL P+   YS+L+ +    +RKD++
Sbjct: 501 EAFQFYDNMLAAGLTPDDTLYSMLVGSLHTDKRKDEI 537



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 166/362 (45%), Gaps = 4/362 (1%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A ++L  +   G+K +   Y  L+ T  +      + EV  EM + G+EP V TY  L+D
Sbjct: 152 ARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVGTYTILVD 211

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G + AG ++K    +  ++ KNV  D   ++A+I A  ++G V RA +V  E     + +
Sbjct: 212 GLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVG--NGI 269

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
           +P+  T GAL+      GQ++ A  +   +    +     ++   I+   + G  + A  
Sbjct: 270 EPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALE 329

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +   M + G+  D    + L        ++E A ++L      G+    +SY++L+   S
Sbjct: 330 IKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVESNYVSYTTLISIHS 389

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
              +  +A  L+  M+    +P+V T N +I        + +      +M+  GL P+  
Sbjct: 390 KEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDGYIKSGSIREAERFKKEMEKKGLVPDVY 449

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468
           TY+ L+        V+V L L  + K+ G  PN+V +  +I   ++  R E+A    +++
Sbjct: 450 TYAALVHGHCVNGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNM 509

Query: 469 LS 470
           L+
Sbjct: 510 LA 511



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 130/284 (45%), Gaps = 2/284 (0%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           ++DG  KAG++  A      M    VK +   +N L+    +     R  +VL EM  E 
Sbjct: 139 VVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEM--ES 196

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             V+P   T   L+   + AG + +   V+  I + N+ G    Y+  IN   + G+   
Sbjct: 197 GGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRR 256

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  V+D+    G+ P+E    ALI+     G++EAA  +L + + +G+    I +++++ 
Sbjct: 257 ASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMID 316

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                    KALE+   M+ + ++  V T N L   LC  +++    ++L  M   G+  
Sbjct: 317 GYCRHGMVDKALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKLLHIMTENGVES 376

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           N ++Y+ L+    ++ D+     L    +  G  P++V +  +I
Sbjct: 377 NYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMI 420



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/245 (21%), Positives = 111/245 (45%), Gaps = 7/245 (2%)

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           AG++D AR +   + ++ +K     Y   ++  ++  +      V  +M   GV P    
Sbjct: 146 AGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEMESGGVEPTVGT 205

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            + L+D    AG +     +  E K + ++  +  YS+++ A   A N ++A E+++   
Sbjct: 206 YTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECV 265

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              ++P   T  ALI   C   Q+     +L+DM+  G+  N I ++ ++    R   V+
Sbjct: 266 GNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVD 325

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTS 484
             L + +  +  G+  ++  +  +  G+C   R E A+ L  H+++ N     +E+ + S
Sbjct: 326 KALEIKAVMERMGIQLDVYTYNTLACGLCRVNRMEDAKKL-LHIMTENG----VESNYVS 380

Query: 485 LALMV 489
              ++
Sbjct: 381 YTTLI 385



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 5/113 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           I+ G I E     ++ME+KGL+     Y A     C + K +  A R F+ +      P 
Sbjct: 424 IKSGSIREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGK-VDVALRLFEEMKQRGAKPN 482

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +  +  L+S  A    SE AFQ    +  AGL  D  LY+ L+ +     + D
Sbjct: 483 VVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTLYSMLVGSLHTDKRKD 535


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 184/395 (46%), Gaps = 19/395 (4%)

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           ++KA + A R  + V +P + TFN ++S          A  V + ++  GL      Y +
Sbjct: 175 AEKAFRSALR--RRV-SPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNS 231

Query: 133 LITTCAKSGKVDAMFEV---FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           LI    K G    M+ V     EMV AGI P   T+G LI+G  K    A A   +  M+
Sbjct: 232 LIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMK 291

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            + +    V +N+LI+     G V+    ++ EM  E   + P+ IT G ++K     G 
Sbjct: 292 QQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEM--EDLGLSPNEITFGCVLKGFCKKGM 349

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +  A +    + + N++    +Y I I+   + G  E A +V + M KKG+ P+    + 
Sbjct: 350 MADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNC 409

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     +G   +A  +L E K +GI   +++Y+ L+GA       +KA++L + M  + 
Sbjct: 410 LITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVG 469

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           L+P   T N +I   CD   +    E+ + M+      N +TY++ +     K   ++G 
Sbjct: 470 LEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI-----KYFCQIGK 524

Query: 430 M-----LLSQAKEDGVIPNLVMFKCII-GMCSRRY 458
           M     LL++  +  ++PN + ++ I  GM  + Y
Sbjct: 525 MDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGY 559



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/404 (22%), Positives = 171/404 (42%), Gaps = 53/404 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---- 76
           VS  ++++N +I    R G++ +  D+ +D++  GL      Y++     CK   A    
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 77  -----IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
                +KE     +   +PT  TF +L++    + ++  A +V   +++ G+ A    Y 
Sbjct: 247 HVDMLLKE---MVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYN 303

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           +LI+     GKV+   ++  EM + G+ PN  T+G ++ G  K G +A A      M  +
Sbjct: 304 SLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTER 363

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           NV+PD V++N LI    + G ++ A  V   M  +   + P+  T   L+   + +G   
Sbjct: 364 NVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKK--GISPNVTTYNCLITGFSRSGDWR 421

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A  +   + +  I+     Y + I      G+   A  + D+M++ G+ P+ +  + +I
Sbjct: 422 SASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTII 481

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                 G +++A+EI                                      M+  + +
Sbjct: 482 QGFCDKGNIKSAYEI-----------------------------------RTRMEKCRKR 506

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             V T N  I   C   ++ +  ++L++M    L PN ITY  +
Sbjct: 507 ANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 14/147 (9%)

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           S ++L+     AK    A + +      ++ P + T N +I+ LC   QL K  +V  D+
Sbjct: 158 SVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDI 217

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGL---MLLSQAKEDGVIPNLVMFKCII-GMCS- 455
           K+ GL P+  TY+ L+    +K          MLL +  E G+ P  V F  +I G C  
Sbjct: 218 KAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKN 277

Query: 456 -------RRYE--KARTLNEHVLSFNS 473
                  R +E  K + +   V+++NS
Sbjct: 278 SNTAAAVRVFEEMKQQGIAASVVTYNS 304



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 75/167 (44%), Gaps = 7/167 (4%)

Query: 17  KHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC- 71
           K A     +S  + +YN LI    R G       LL++M+ KG+      Y+     +C 
Sbjct: 392 KEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCC 451

Query: 72  --KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
             + +KA+K      ++   P   T+N ++       + + A+++   +++   +A+   
Sbjct: 452 KGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVT 511

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           Y   I    + GK+D   ++ +EM++  + PN  TY  + +G  + G
Sbjct: 512 YNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 184/433 (42%), Gaps = 40/433 (9%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKE 79
           A DV       N +  QG + + + LL D+   G       Y+A    +C +++   ++E
Sbjct: 189 ALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQE 248

Query: 80  AFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
                 ++   P + TFN L+S    +   E   +VL  + E G   D ++Y T+I    
Sbjct: 249 LMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGIC 308

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G +    E+ + M + G++PNV  Y  L+ G   A +  +       M  K+   D V
Sbjct: 309 KEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDV 368

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            FN L+    Q+G VDR  ++L +M   VH   PD IT   ++      G +D A  + K
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQM--LVHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 426

Query: 259 MIHKYNIKGTPEVYTIA-----------------------------------INCCSQTG 283
            +     K     YTI                                    IN   + G
Sbjct: 427 SMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 486

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
             E A  +   M   G  PD +  S +ID  G AGK + A E+L    N+G+S   I YS
Sbjct: 487 LVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYS 546

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           S+  A S      K ++++++++   ++      NA+I++LC   +  + +E L+ M S 
Sbjct: 547 SIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSS 606

Query: 404 GLCPNTITYSILL 416
           G  PN  TY+IL+
Sbjct: 607 GCVPNESTYTILI 619



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 112/490 (22%), Positives = 201/490 (41%), Gaps = 54/490 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V    ++Y  ++R    +GRI++ + +L++M R+G   +  +YH      C+     
Sbjct: 115 AVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGG--- 171

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              FR                            A +VL  +   G   D      ++   
Sbjct: 172 --GFR---------------------------SAVRVLEDLHARGCALDVGNCNLVLNAI 202

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--- 194
              G VD    +  ++ + G EP+V +Y A++ G      +AK +G    +  + V+   
Sbjct: 203 CDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLC----MAKRWGCVQELMEEMVRMAC 258

Query: 195 -PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+ V FN LI+   ++G  +R  +VLA+M AE H   PD      ++      G +  A
Sbjct: 259 PPNIVTFNTLISYLCRNGLFERVHEVLAQM-AE-HGCTPDIRMYATIIDGICKEGHLKVA 316

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E+   +  Y +K     Y   +        WE    +  +M  K    D+V  + L+DF
Sbjct: 317 HEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDF 376

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G V+   E+L++    G    +I+Y++++          +A+ L + M +   KP 
Sbjct: 377 FCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 436

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLL 432
             +   ++  LC  ++     +++S M   G CP N IT++ L+    +K  VE  + LL
Sbjct: 437 TISYTIVLKGLCSAERWVDAEDLMSQMIQQG-CPLNPITFNTLINFLCKKGLVEQAIELL 495

Query: 433 SQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 489
            Q   +G  P+L+ +  +I   G   +  E    LN  V   N G       ++S+A  +
Sbjct: 496 KQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMV---NKGMSPNTIIYSSIASAL 552

Query: 490 YREAIVAGTI 499
            RE  +   I
Sbjct: 553 SREGRINKVI 562



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/356 (20%), Positives = 147/356 (41%), Gaps = 4/356 (1%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           RL     +  +   Y  ++      G++     V  EM   G  P    Y  +++   + 
Sbjct: 111 RLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRG 170

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G    A      + ++    D    N ++ A    G+VD+A  +L ++ +     +PD +
Sbjct: 171 GGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPS--FGCEPDVV 228

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           +  A++K    A +    +E+ + + +         +   I+   + G +E    V   M
Sbjct: 229 SYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM 288

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            + G  PD    + +ID     G ++ A EIL    + G+   ++ Y++L+    +A+ W
Sbjct: 289 AEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERW 348

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           ++  EL   M          T N L+   C    + + +E+L  M   G  P+ ITY+ +
Sbjct: 349 EETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTV 408

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVL 469
           +    ++  ++  +MLL      G  PN + +  ++ G+CS  R+  A  L   ++
Sbjct: 409 INGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMI 464



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 125/267 (46%), Gaps = 7/267 (2%)

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +NA++    ++G ++ A  + A +     PV P+  T   +++A    G++  A  V   
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV-----PVPPNAYTYFPVVRALCARGRIADALAVLDE 147

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +      P +Y + +    + G +  A  V +D+  +G   D    + +++     G 
Sbjct: 148 MPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGS 207

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           V+ A  +L++  + G    ++SY++++     AK W    EL E M  +   P + T N 
Sbjct: 208 VDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 267

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI+ LC      +  EVL+ M   G  P+   Y+ ++    ++  ++V   +L++    G
Sbjct: 268 LISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYG 327

Query: 440 VIPNLVMFKCII-GMCS-RRYEKARTL 464
           + PN+V +  ++ G+CS  R+E+   L
Sbjct: 328 LKPNVVCYNTLLKGLCSAERWEETEEL 354



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/182 (17%), Positives = 82/182 (45%), Gaps = 5/182 (2%)

Query: 46  DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSV 101
           DL+  M ++G   ++ +      N    +  +++A    K +     +P L +++ ++  
Sbjct: 458 DLMSQMIQQGC-PLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 516

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
              +  ++ A ++L ++   G+  +  +Y+++ +  ++ G+++ + ++F  + +  I  +
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSD 576

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
              Y A+I    K G+  +A      M S    P+   +  LI      G V  A ++L 
Sbjct: 577 AVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLT 636

Query: 222 EM 223
           E+
Sbjct: 637 EL 638


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 190/418 (45%), Gaps = 10/418 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLST 94
           G++        +M+ +GL+  D  Y      +CK+++ + EA   F+ +      P +  
Sbjct: 287 GKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARR-LDEAVELFEELDLNRSVPCVYA 345

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N ++    S+   + A+ +L   +  G       Y  ++T   + GKV+    +  EM 
Sbjct: 346 YNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM- 404

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
                PN+ TY  LID   KAG++  A      M+   + P+ +  N +I    ++  +D
Sbjct: 405 RQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLD 464

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYT 273
            A  +   ++ +V    PD  T  +L+      G+VD A  +Y KM+    I     VYT
Sbjct: 465 EACSIFLGLDHKV--CSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVV-VYT 521

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I    + G  E    +Y +M  +G  PD + L++ +D    AG+VE    + +E K Q
Sbjct: 522 SLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQ 581

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+   + SYS L+     A   ++  +L+  MK   L   V   N +I   C   ++ K 
Sbjct: 582 GLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKA 641

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            ++L +MK+ GL P  +TY  ++    + D ++   ML  +AK  GV  N+V++  +I
Sbjct: 642 YQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLI 699



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/478 (24%), Positives = 213/478 (44%), Gaps = 25/478 (5%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           AF V+ ++++   +     YTTLI   + + + D M  +FH+M   G E NVH +  L+ 
Sbjct: 187 AFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVR 246

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
             A+ G++  A      M+S +   D V++N  I   G+ G VD A+    EM A+   +
Sbjct: 247 VFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQ--GL 304

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD +T   L+     A ++D A E+++ +           Y   I      G ++ A S
Sbjct: 305 VPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYS 364

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           + +   +KG IP  +  + ++   G  GKVE A  I  E + Q  +  + +Y+ L+    
Sbjct: 365 LLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMR-QDAAPNLTTYNILIDMLC 423

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A   + AL++ + MK   L P + T+N +I  LC   +L +   +   +      P++ 
Sbjct: 424 KAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSR 483

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLNEH 467
           T+  L+    R+  V+    L  +  +   IPN+V++  +I     C R+ +  +   E 
Sbjct: 484 TFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEM 543

Query: 468 VLSFNSGRPQIENKWTSLAL---------MVYREAIVAGTIPTVEVVSKVL-GCLQLPYN 517
           V    S    + N +               ++ E    G +P V   S ++ G ++  ++
Sbjct: 544 VHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFS 603

Query: 518 ADIRERLVE--NLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVPCV 570
            +  +   E    G+  D L  +   ++IDGF   G+ D +A+ LLEE  + G+ P V
Sbjct: 604 RETYKLFYEMKEQGLHLDVLAYN---TVIDGFCKSGKVD-KAYQLLEEMKTKGLQPTV 657



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/441 (21%), Positives = 201/441 (45%), Gaps = 9/441 (2%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H     D +  L +YN LI    + G +   + + + M+  GL       +     +CK+
Sbjct: 401 HDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKA 460

Query: 74  QKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           QK  +    F  L   V +P   TF  L+         + A+ +   + ++    +  +Y
Sbjct: 461 QKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVY 520

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T+LI    K G+ +   +++ EMV+ G  P++    + +D   KAG+V K    +  +++
Sbjct: 521 TSLIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKA 580

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           + + PD   ++ LI    ++G     + +  EM  +   +  D +    ++     +G+V
Sbjct: 581 QGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQ--GLHLDVLAYNTVIDGFCKSGKV 638

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D+A ++ + +    ++ T   Y   ++  ++    + A  ++++    GV  + V  S+L
Sbjct: 639 DKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSL 698

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID  G  G+++ A+ IL+E   +G++    +++ L+ A   A+   +A   +++MK++K 
Sbjct: 699 IDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKC 758

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P   T + +I  LC   +  K      +M+  GL PN ITY+ ++    +  +V     
Sbjct: 759 SPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARG 818

Query: 431 LLSQAKEDGVIPNLVMFKCII 451
           L  + K  G +P+   +  +I
Sbjct: 819 LFDRFKASGGVPDSACYNAMI 839



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 111/497 (22%), Positives = 191/497 (38%), Gaps = 69/497 (13%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLIT 135
           ++EA   F  +  P      +++ V    KD   AFQ  R V+    +A C ++Y   + 
Sbjct: 87  VEEALNVFDEMSQP-----EVIVGVMKRLKDVNVAFQYFRWVERKTQQAHCPEVYNAFLM 141

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
             A++  +D + ++  EM  AG   + H    L+    K+ ++ +AFG   +MR    +P
Sbjct: 142 VMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRKFKFRP 201

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
               F+A  T  G   A +R                PD +                    
Sbjct: 202 ---AFSAYTTLIGALSAANR----------------PDPMLT------------------ 224

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           ++  + +   +    ++T  +   ++ G  + A S+ D+M       D V  +  ID  G
Sbjct: 225 LFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFG 284

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             GKV+ A++   E K QG+    ++Y++L+G    A+   +A+EL+E +   +  P V 
Sbjct: 285 KVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVY 344

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
             N +I       +  +   +L   K  G  P+ I Y+ +L    RK  VE  L +  + 
Sbjct: 345 AYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM 404

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 495
           ++D   PNL  +  +I M  +  E                          AL V      
Sbjct: 405 RQDAA-PNLTTYNILIDMLCKAGE-----------------------LEAALKVQDTMKE 440

Query: 496 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PR 553
           AG  P +  V+ ++  L      D    +   L     +      CSLIDG G       
Sbjct: 441 AGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDD 500

Query: 554 AFSLLEEAASFGIVPCV 570
           A+SL E+      +P V
Sbjct: 501 AYSLYEKMLDSDQIPNV 517



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 169/366 (46%), Gaps = 43/366 (11%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A+ E  +   LVP+  + ++++L+     +  S   +++   ++E GL  D   Y T+I
Sbjct: 572 RALFEEIKAQGLVPD--VRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVI 629

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               KSGKVD  +++  EM   G++P V TYG+++DG AK  ++ +A+  +   +S  V 
Sbjct: 630 DGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVD 689

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
            + V++++LI   G+ G +D A+ +L E+  +   + P+  T   L+ A   A ++D A+
Sbjct: 690 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQK--GLTPNSYTWNCLLDALVKAEEIDEAQ 747

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
             ++ +   N+K +P   T +I                                 +I+  
Sbjct: 748 VCFQNMK--NLKCSPNAMTYSI---------------------------------MINGL 772

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               K   AF   QE + QG+    I+Y++++   + A N  +A  L++  K+    P  
Sbjct: 773 CMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDS 832

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE----VGLM 430
           +  NA+I  L   ++      V  + +  G   N+ T  +LL A  + D +E    VG +
Sbjct: 833 ACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQAAIVGAV 892

Query: 431 LLSQAK 436
           L   AK
Sbjct: 893 LREMAK 898



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 9/194 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVP 88
           L +  R+ E   L E+ +  G+ D++ V ++   +       I EA+   +      L P
Sbjct: 667 LAKIDRLDEAYMLFEEAKSIGV-DLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 725

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N    T+N L+     +++ + A    + ++      +   Y+ +I       K +  F 
Sbjct: 726 NSY--TWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFV 783

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            + EM   G++PN  TY  +I G AKAG V +A G +   ++    PD   +NA+I    
Sbjct: 784 FWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLS 843

Query: 209 QSGAVDRAFDVLAE 222
            +     A+ V  E
Sbjct: 844 SANKAMDAYIVFEE 857


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/471 (24%), Positives = 210/471 (44%), Gaps = 46/471 (9%)

Query: 25  VSEQLHSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  L++YN LI   R+G +  E + L + M+ +G    DKV +    +V    +  +EA
Sbjct: 260 VAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTP-DKVTYNALLDVFGKSRRPQEA 318

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            +  + +     +PT  T+N L+S  A     E A  +   +   G+K D   YTTL++ 
Sbjct: 319 MKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSG 378

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K+GK D   +VF EM   G +PN+ T+ ALI      G+ A+    +  ++  N  PD
Sbjct: 379 FEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPD 438

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +N L+   GQ+G   +   +  EM       + D  T   L+ A +  G  D+A  V
Sbjct: 439 IVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERD--TFNTLISAYSRCGSFDQAMAV 496

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID---- 312
           YK + +  +      Y   +   ++ G WE +  V  +M      P+E+  S+L+     
Sbjct: 497 YKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYAN 556

Query: 313 ---------FAG--HAGKVEAAFEILQ--------------------EAKNQGISVGIIS 341
                    FA   ++G VE    +L+                    E + +GIS  I +
Sbjct: 557 GKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITT 616

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
            ++++      +   KA E+   M   +  P+++T N+L+      +   K+ E+L ++ 
Sbjct: 617 LNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVL 676

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             G+ P+ I+Y+ ++ A  R   ++    + S+ K+  ++P++V +   I 
Sbjct: 677 EKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIA 727



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 193/434 (44%), Gaps = 9/434 (2%)

Query: 42  SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNM 97
           S    L+E M  +G+   D   +    + C+     +EA   F+ +      P   T+N 
Sbjct: 246 SNVTALVEAMRSRGVAP-DLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNA 304

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L+ V   S+  + A +VL+ ++  G       Y +LI+  AK G ++   ++  +MV+ G
Sbjct: 305 LLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKG 364

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I+P+V TY  L+ G  KAG+   A   +  MR+   KP+   FNALI   G  G      
Sbjct: 365 IKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMM 424

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            V  ++  ++    PD +T   L+      G   +   ++K + +       + +   I+
Sbjct: 425 KVFDDI--KLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLIS 482

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
             S+ G ++ A +VY  M + GV+PD    +A++      G  E + ++L E ++     
Sbjct: 483 AYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKP 542

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
             +SYSSL+ A +N K  ++     E + S  ++     +  L+      D L +T    
Sbjct: 543 NELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAF 602

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR- 456
            +++  G+ P+  T + +L    RK  V     +L+   E    P+L  +  ++ M SR 
Sbjct: 603 LELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRS 662

Query: 457 -RYEKARTLNEHVL 469
             ++K+  +   VL
Sbjct: 663 ENFQKSEEILREVL 676



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 168/371 (45%), Gaps = 7/371 (1%)

Query: 89  NPTLSTFNMLMSVCAS-SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           NPTL T+N++++V             ++  ++  G+  D   Y TLI+ C +    +   
Sbjct: 225 NPTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAV 284

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F +M   G  P+  TY AL+D   K+ +  +A      M +    P  V +N+LI+A 
Sbjct: 285 HLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAY 344

Query: 208 GQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            + G ++ A D+  +M   VH  + PD  T   L+     AG+ D A +V+  +     K
Sbjct: 345 AKGGLLEEALDLKTQM---VHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCK 401

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                +   I      G +     V+DD+      PD V  + L+   G  G       I
Sbjct: 402 PNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGI 461

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            +E K  G      ++++L+ A S   ++ +A+ +Y+ M    + P +ST NA++ AL  
Sbjct: 462 FKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALAR 521

Query: 387 GDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           G    ++ +VL++M+  G C PN ++YS LL A     ++E       +     V  + V
Sbjct: 522 GGLWEQSEKVLAEMED-GRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAV 580

Query: 446 MFKCIIGMCSR 456
           + K ++ + S+
Sbjct: 581 LLKTLVLVNSK 591



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 9/342 (2%)

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           Q  G+  D   YT LI   + SG+      +F++M   G  P + TY  +++   K G  
Sbjct: 185 QNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMP 244

Query: 179 AKAFGAY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
                A    MRS+ V PD   +N LI+ C +    + A  +  +M  E     PD +T 
Sbjct: 245 WSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLE--GFTPDKVTY 302

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDD 294
            AL+      G+  R +E  K++ +    G   T   Y   I+  ++ G  E A  +   
Sbjct: 303 NALLDVF---GKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQ 359

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M  KG+ PD    + L+     AGK + A ++  E +  G    I ++++L+    N   
Sbjct: 360 MVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGK 419

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           + + +++++ +K     P + T N L+          +   +  +MK  G      T++ 
Sbjct: 420 FAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNT 479

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L+ A  R    +  + +     E GV+P+L  +  ++   +R
Sbjct: 480 LISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALAR 521



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/348 (18%), Positives = 151/348 (43%), Gaps = 33/348 (9%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+N L++V   +        + + ++ AG  A+   + TLI+  ++ G  D    
Sbjct: 436 SPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMA 495

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V+  M+ AG+ P++ TY A++   A+ G   ++      M     KP+ + +++L+ A  
Sbjct: 496 VYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYA 555

Query: 209 QSGAVDR--AF--------------------------DVLAE-----MNAEVHPVDPDHI 235
               ++R  AF                          D+L E     +      + PD  
Sbjct: 556 NGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDIT 615

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T+ A++        V +A E+   +H+     +   Y   +   S++ +++ +  +  ++
Sbjct: 616 TLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREV 675

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            +KG+ PD +  + +I      G+++ A  I  E K+  +   +++Y++ +   +    +
Sbjct: 676 LEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMF 735

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            +A+++  +M     KP  +T N+++   C  DQ  +    + ++ +L
Sbjct: 736 AEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNLSNL 783



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/429 (21%), Positives = 171/429 (39%), Gaps = 46/429 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
           +YN LI    + G + E +DL   M  KG+      Y    + F    K   AI+     
Sbjct: 336 TYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEM 395

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             +   P + TFN L+ +  +        +V   ++      D   + TL+    ++G  
Sbjct: 396 RAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMD 455

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
             +  +F EM  AG      T+  LI   ++ G   +A   Y  M    V PD   +NA+
Sbjct: 456 SQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAV 515

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           + A  + G  +++  VLAEM  E     P+ ++  +L+ A AN  +++R     + I+  
Sbjct: 516 LAALARGGLWEQSEKVLAEM--EDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSG 573

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           +++    +    +   S++         + ++ ++G+ PD   L+A++   G    V  A
Sbjct: 574 SVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKA 633

Query: 324 FEIL-----------------------------------QEAKNQGISVGIISYSSLMGA 348
            EIL                                   +E   +G+    ISY++++ A
Sbjct: 634 HEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYA 693

Query: 349 -CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
            C N +  ++A  ++  MK   L P V T N  I          + ++V+  M   G  P
Sbjct: 694 YCRNGR-MKEASRIFSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKP 752

Query: 408 NTITYSILL 416
           +  TY+ ++
Sbjct: 753 DQNTYNSIV 761



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 8/233 (3%)

Query: 231 DPDHITIGA---LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWE 286
           D  HI + A   L+ A +++G+   A  ++  + +     T   Y + +N   + G  W 
Sbjct: 187 DGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWS 246

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
              ++ + M  +GV PD    + LI         E A  + Q+ K +G +   ++Y++L+
Sbjct: 247 NVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALL 306

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                ++  Q+A+++ + M++    PT  T N+LI+A   G  L + +++ + M   G+ 
Sbjct: 307 DVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIK 366

Query: 407 PNTITYSILLVACER--KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           P+  TY+ LL   E+  KDD  + + L  + +  G  PN+  F  +I M   R
Sbjct: 367 PDVFTYTTLLSGFEKAGKDDFAIQVFL--EMRAVGCKPNICTFNALIKMHGNR 417


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 171/363 (47%), Gaps = 5/363 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L  +N L+     +K  E A  +L  + E G+K +   Y   I   +KSG++      
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M+++GI PN   Y  LI G    G   +A   +  M  K + PD   ++A+I +  +
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSK 638

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGT 268
           +G    A  V  +       V PD     +L+      G +++A ++Y +M+H   I   
Sbjct: 639 NGKTKEAMGVFLKFLKT--GVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHN-GINPN 695

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             VY   IN   + G+   A  ++D++ +K ++PD V  S +ID    +G +  AF++  
Sbjct: 696 IVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFD 755

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  ++GIS     Y  L+  C    N +KAL L+ H    K   ++S  N+LI + C   
Sbjct: 756 EMISKGISPDGYIYCILIDGCGKEGNLEKALSLF-HEAQQKSVGSLSAFNSLIDSFCKHG 814

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ +  E+  DM    L PN +TY+IL+ A  + + +E    L    +   +IPN + + 
Sbjct: 815 KVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYT 874

Query: 449 CII 451
            ++
Sbjct: 875 SLL 877



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 194/435 (44%), Gaps = 7/435 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
            I++G I E + + ++M  +GL      Y+A    + K+ +  K    F +++     P 
Sbjct: 356 FIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPD 415

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+N+L+     S D   A ++L  ++   L      Y+ LI+    S  +    EV  
Sbjct: 416 TWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLD 475

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M+  G++PNV  YG LI    +  +   A     IM +  V PD   +N LI    ++ 
Sbjct: 476 QMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAK 535

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V+ A  +L +M  +   + P+  T GA +   + +G++  A   +K +    I     +
Sbjct: 536 KVEEAKMLLVDMGEK--GIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVI 593

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           YTI I      G+   A S +  M +KG+IPD    SA+I      GK + A  +  +  
Sbjct: 594 YTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL 653

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+   +  Y+SL+       + +KA +LY+ M    + P +   N LI  LC   ++ 
Sbjct: 654 KTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVT 713

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           K  E+  +++   L P+ +TYS ++    +  ++     L  +    G+ P+  ++  +I
Sbjct: 714 KARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILI 773

Query: 452 GMCSRR--YEKARTL 464
             C +    EKA +L
Sbjct: 774 DGCGKEGNLEKALSL 788



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 187/388 (48%), Gaps = 10/388 (2%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTL 92
           +++ R    I+LL+ M   G+L     Y+     +C+++K  +       +      P  
Sbjct: 497 VQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNA 556

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+   +++ + S + + A +  + +  +G+  +  +YT LI      G        F  
Sbjct: 557 HTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKC 616

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+  G+ P++  Y A+I   +K G+  +A G +       V PD  ++N+LI+   + G 
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 213 VDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           +++A  +  EM   +H  ++P+ +    L+      G+V +ARE++  I + ++      
Sbjct: 677 IEKASQLYDEM---LHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVT 733

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y+  I+   ++G+   A  ++D+M  KG+ PD      LID  G  G +E A  +  EA+
Sbjct: 734 YSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQ 793

Query: 332 NQGISVGIIS-YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            +  SVG +S ++SL+ +        +A EL++ M   KL P + T   LI A    + +
Sbjct: 794 QK--SVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMM 851

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVA 418
            +  ++  DM++  + PNT+TY+ LL++
Sbjct: 852 EEAEQLFLDMETRNIIPNTLTYTSLLLS 879



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 205/451 (45%), Gaps = 13/451 (2%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L +YN  I    + G + E +++ + M  KGL      Y       CK QK  KEA   
Sbjct: 275 NLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK-QKRSKEAKLI 333

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F+ +P    NP   T+  L+       + E A ++   +   GLK +   Y  +I   AK
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +G++     +F+EM+ AG+EP+  TY  LIDG  K+  +AKA      M+++ + P    
Sbjct: 394 AGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFT 453

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           ++ LI+    S  + +A +VL +M    + V P+    G L+KA     + + A E+ K+
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIR--NGVKPNVFMYGTLIKAYVQESRYEMAIELLKI 511

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +    +      Y   I    +    E A  +  DM +KG+ P+     A I+    +G+
Sbjct: 512 MIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGE 571

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A    ++  + GI    + Y+ L+    +  N  +AL  ++ M    L P +   +A
Sbjct: 572 IQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSA 631

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           +I +L    +  + M V       G+ P+   Y+ L+    ++ D+E    L  +   +G
Sbjct: 632 IIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG 691

Query: 440 VIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
           + PN+V++  +I G+C      KAR L + +
Sbjct: 692 INPNIVVYNTLINGLCKLGEVTKARELFDEI 722



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 189/419 (45%), Gaps = 13/419 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE-----AF 81
           +YN +I    + G +++ + L  +M   GL      Y+       KS    K        
Sbjct: 383 TYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEM 442

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +  KL P+P   T+++L+S    S D + A +VL  +   G+K +  +Y TLI    +  
Sbjct: 443 KARKLTPSPF--TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQES 500

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           + +   E+   M+  G+ P++  Y  LI G  +A +V +A      M  K +KP+   + 
Sbjct: 501 RYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYG 560

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           A I    +SG +  A     +M +    + P+++    L+K   + G    A   +K + 
Sbjct: 561 AFINLYSKSGEIQVAERYFKDMLSS--GIVPNNVIYTILIKGHCDVGNTVEALSTFKCML 618

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +      Y+  I+  S+ G  + A  V+    K GV+PD    ++LI      G +E
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIE 678

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A ++  E  + GI+  I+ Y++L+          KA EL++ ++   L P V T + +I
Sbjct: 679 KASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTII 738

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
              C    L +  ++  +M S G+ P+   Y IL+  C ++ ++E  L L  +A++  V
Sbjct: 739 DGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV 797



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 5/334 (1%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+    K+  +   ++V+  MV A I P+V+TY  +I    K G V K       M  K 
Sbjct: 213 LMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEME-KE 271

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
            KP+   +NA I    Q+GAVD A +V   M  +   + PD  T   L+       +   
Sbjct: 272 CKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEK--GLGPDGHTYTLLVDGFCKQKRSKE 329

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A+ +++ +    +      YT  I+   + G+ E A  + D+M  +G+  + V  +A+I 
Sbjct: 330 AKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIG 389

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               AG++  A  +  E    G+     +Y+ L+     + +  KA EL   MK+ KL P
Sbjct: 390 GIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTP 449

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           +  T + LI+ LC    L K  EVL  M   G+ PN   Y  L+ A  ++   E+ + LL
Sbjct: 450 SPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELL 509

Query: 433 SQAKEDGVIPNLVMFKC-IIGMC-SRRYEKARTL 464
                +GV+P+L  + C IIG+C +++ E+A+ L
Sbjct: 510 KIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKML 543



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 196/414 (47%), Gaps = 20/414 (4%)

Query: 39   GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA----FRFFKLVPNPTLST 94
            G   E +   + M  KGL+   + Y A   ++ K+ K  KEA     +F K    P +  
Sbjct: 605  GNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKT-KEAMGVFLKFLKTGVVPDVFL 663

Query: 95   FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
            +N L+S      D E A Q+   +   G+  +  +Y TLI    K G+V    E+F E+ 
Sbjct: 664  YNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIE 723

Query: 155  NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
               + P+V TY  +IDG  K+G + +AF  +  M SK + PD  ++  LI  CG+ G ++
Sbjct: 724  EKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLE 783

Query: 215  RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEV-- 271
            +A  +  E  A+   V        +L+ +    G+V  ARE++  M+ K   K TP +  
Sbjct: 784  KALSLFHE--AQQKSVGSLS-AFNSLIDSFCKHGKVIEARELFDDMVDK---KLTPNIVT 837

Query: 272  YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
            YTI I+   +    E A  ++ DM  + +IP+ +  ++L+      G       + ++ +
Sbjct: 838  YTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDME 897

Query: 332  NQGISVGIISYSSLMGA-CSNAKNWQKALELYEH--MKSIKLKPTVSTMNALITALCDGD 388
             +GI+   I+Y  +  A C   K+ + AL+L     ++ IKL+  V   +ALI  LC   
Sbjct: 898  ARGIACDAIAYGVMASAYCKEGKSLE-ALKLLNKSLVEGIKLEDDV--FDALIFHLCKEK 954

Query: 389  QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            Q+   +E+LS+M    L  ++ T + LL+   +  + +    +L   +  G +P
Sbjct: 955  QISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 1008



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 146/319 (45%), Gaps = 7/319 (2%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF   ++ G  P +     L+    KA  +   +  YG M    + PD   +  +I A  
Sbjct: 194 VFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHC 253

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V +   VL+EM  E     P+  T  A +      G VD A EV K++ +  +   
Sbjct: 254 KVGDVIKGKMVLSEMEKECK---PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPD 310

Query: 269 PEVYTIAIN-CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
              YT+ ++  C Q    E A  +++ M   G+ P+    +ALID     G +E A  I 
Sbjct: 311 GHTYTLLVDGFCKQKRSKE-AKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIK 369

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E   +G+ + +++Y++++G  + A    KA+ L+  M    L+P   T N LI      
Sbjct: 370 DEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKS 429

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             + K  E+L++MK+  L P+  TYS+L+       D++    +L Q   +GV PN+ M+
Sbjct: 430 HDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMY 489

Query: 448 KCIIG--MCSRRYEKARTL 464
             +I   +   RYE A  L
Sbjct: 490 GTLIKAYVQESRYEMAIEL 508



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 160/374 (42%), Gaps = 11/374 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PTL   N LM     +      ++V   + EA +  D   YT +I    K G V     V
Sbjct: 205 PTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMV 264

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CG 208
             EM     +PN+ TY A I G  + G V +A     +M  K + PD   +  L+   C 
Sbjct: 265 LSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323

Query: 209 QSGAVDRAFDVLAEMNAEVHP---VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           Q  + +      A++  E  P   ++P+  T  AL+      G ++ A  +   +    +
Sbjct: 324 QKRSKE------AKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGL 377

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     Y   I   ++ G+   A S++++M   G+ PD    + LID    +  +  A E
Sbjct: 378 KLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACE 437

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L E K + ++    +YS L+    ++ + QKA E+ + M    +KP V     LI A  
Sbjct: 438 LLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYV 497

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              +    +E+L  M + G+ P+   Y+ L++   R   VE   MLL    E G+ PN  
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAH 557

Query: 446 MFKCIIGMCSRRYE 459
            +   I + S+  E
Sbjct: 558 TYGAFINLYSKSGE 571



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 111/239 (46%), Gaps = 11/239 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L + G +++  +L +++E K L+     Y       CKS   + EAF+ F  + +  +
Sbjct: 704 NGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGN-LTEAFKLFDEMISKGI 762

Query: 93  S----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           S     + +L+  C    + E A  +    Q+  +      + +LI +  K GKV    E
Sbjct: 763 SPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEARE 821

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F +MV+  + PN+ TY  LID   KA  + +A   +  M ++N+ P+ + + +L+ +  
Sbjct: 822 LFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYN 881

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
           Q G   +   +  +M  E   +  D I  G +  A    G   ++ E  K+++K  ++G
Sbjct: 882 QIGNRFKMISLFKDM--EARGIACDAIAYGVMASAYCKEG---KSLEALKLLNKSLVEG 935


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 213/473 (45%), Gaps = 66/473 (13%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           FKL   PTL TFN L+S                     GL             C+K+  +
Sbjct: 2   FKLGLQPTLVTFNTLLS---------------------GL-------------CSKAKIM 27

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           DA+ ++F EMV  G EP+V TY  +I+G  K G    A      M  K  KP+ V +N +
Sbjct: 28  DAV-KLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTI 86

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I +  +   V  A D  +EM  E  P  PD  T  +++    N G+V+ A  ++K + + 
Sbjct: 87  IDSLCKDRLVTEAMDFFSEMVKEGIP--PDVFTYSSILHGFCNLGRVNEATSLFKQMVER 144

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           N+      +TI I+   +      A  V++ MT+KG+ PD    +AL+D      +++ A
Sbjct: 145 NVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEA 204

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            ++      +G +  + SY+ L+     +    +A  L   M    L P + T + L+  
Sbjct: 205 QKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRG 264

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
            C   +  +  E+L +M S GL PN ITYSI+L    +   ++    LL   +E  + PN
Sbjct: 265 FCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPN 324

Query: 444 LVMFKCII-GMCS-RRYEKARTLNEHVLSFNSG-RPQI-----------ENKWTSLALMV 489
           + ++  +I GMC+  + E AR L  ++  F  G +P +           +   ++ A  +
Sbjct: 325 IFIYTILIEGMCTFGKLEAARELFSNL--FVKGIQPTVVTYTVMISGLLKGGLSNEACEL 382

Query: 490 YREAIVAGTIP---TVEVVSKVLGCLQLPYNADIRE--RLVENL---GVSADA 534
           +RE  V G +P   T  V+  + G L+   N D     RL+E +   G SAD+
Sbjct: 383 FREMAVNGCLPNSCTYNVI--IQGFLR---NGDTPNAVRLIEEMVGKGFSADS 430



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/383 (24%), Positives = 181/383 (47%), Gaps = 6/383 (1%)

Query: 73  SQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           S+  I +A + F    K+   P + T++ +++      ++  A Q+L+ ++E G K +  
Sbjct: 22  SKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVV 81

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            Y T+I +  K   V    + F EMV  GI P+V TY +++ G    G+V +A   +  M
Sbjct: 82  AYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQM 141

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
             +NV P++V F  LI    +   +  A+ V   M  +   ++PD  T  AL+    +  
Sbjct: 142 VERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK--GLEPDVYTYNALVDGYCSRS 199

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           Q+D A++++ ++ +         Y I IN   ++G  + A  +  +M+ K + PD    S
Sbjct: 200 QMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYS 259

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            L+      G+ + A E+L+E  + G+   +I+YS ++       +  +A EL + M+  
Sbjct: 260 TLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQES 319

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
           K++P +     LI  +C   +L    E+ S++   G+ P  +TY++++    +       
Sbjct: 320 KIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEA 379

Query: 429 LMLLSQAKEDGVIPNLVMFKCII 451
             L  +   +G +PN   +  II
Sbjct: 380 CELFREMAVNGCLPNSCTYNVII 402



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 172/388 (44%), Gaps = 9/388 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLV 87
           N L + G  +  + LL+ ME KG       Y+    ++CK  + + EA  FF     + +
Sbjct: 53  NGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCK-DRLVTEAMDFFSEMVKEGI 111

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P    +  ++L   C   + +E A  + + + E  +  +   +T LI    K   +   +
Sbjct: 112 PPDVFTYSSILHGFCNLGRVNE-ATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAW 170

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            VF  M   G+EP+V+TY AL+DG     Q+ +A   + IM  K   P+   +N LI   
Sbjct: 171 LVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGH 230

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +SG +D A  +LAEM+ +   + PD  T   LM+     G+   A+E+ K +  Y +  
Sbjct: 231 CKSGRIDEAKGLLAEMSHK--SLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLP 288

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y+I ++   + G  + A  +   M +  + P+    + LI+     GK+EAA E+ 
Sbjct: 289 NLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELF 348

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                +GI   +++Y+ ++          +A EL+  M      P   T N +I      
Sbjct: 349 SNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRN 408

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSIL 415
              P  + ++ +M   G   ++ T+ +L
Sbjct: 409 GDTPNAVRLIEEMVGKGFSADSSTFRML 436



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 1/164 (0%)

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K G+ P  V  + L+       K+  A ++  E    G    +I+YS+++       N
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
              AL+L + M+    KP V   N +I +LC    + + M+  S+M   G+ P+  TYS 
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
           +L        V     L  Q  E  VIPN V F  +I G+C +R
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKR 164


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/432 (26%), Positives = 202/432 (46%), Gaps = 35/432 (8%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           FNV KS K +  A+            +F ++++ C  +      F++L +++E GL  + 
Sbjct: 147 FNVLKS-KVVLNAY------------SFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNV 193

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
            +YTTLI  C K+G V     +F +M   G+ PN HTY  L++G  K G   + F  Y  
Sbjct: 194 VIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYEN 253

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPVDPDHITIGALMKACA 245
           M    + P+   +N LI+     G VD+AF V AEM  +     V   +I IG L +   
Sbjct: 254 MNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRG-- 311

Query: 246 NAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
                 +  E  K++HK N  G +P +  Y I IN     G  + A  +++ +   G+ P
Sbjct: 312 -----KKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSP 366

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
             V  + LI        +  A ++++E + + I+   ++Y+ L+ A +      KA E++
Sbjct: 367 TLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMH 426

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
             M+   L P V T + LI   C    + +  +    +  + L PN++ Y+ ++    ++
Sbjct: 427 SLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKE 486

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG-RPQIE 479
                 L LL++    G++PN+  F   +G+  R  ++++A  L   ++  NSG +P + 
Sbjct: 487 GSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMI--NSGLKPSV- 543

Query: 480 NKWTSLALMVYR 491
               SL  MV++
Sbjct: 544 ----SLYKMVHK 551



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/443 (22%), Positives = 194/443 (43%), Gaps = 24/443 (5%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           LY  ++     S   D      H M++ G  P  +T+  L+    ++    KA+  + ++
Sbjct: 91  LYDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVL 150

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           +SK V  +   F  +IT C ++G   R F +LA +  E   + P+ +    L+  C   G
Sbjct: 151 KSK-VVLNAYSFGIMITGCCEAGYFVRVFRLLAVL--EEFGLSPNVVIYTTLIDGCCKNG 207

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            V  A+ ++  + +  +      Y++ +N   + G       +Y++M + G++P+    +
Sbjct: 208 DVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYN 267

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            LI    + G V+ AF++  E + +GI+ G+++Y+ L+G     K + +A++L   +  +
Sbjct: 268 CLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKV 327

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            L P + T N LI   CD  ++   + + + +KS GL P  +TY+ L+    + +++   
Sbjct: 328 GLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGA 387

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 488
           L L+ + +E  +  + V +  +I   +R     +    H L   SG   + + +T   L+
Sbjct: 388 LDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGL--VPDVYTYSVLI 445

Query: 489 VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFG 548
                 V G +       K LG + L  N+ I   ++        +              
Sbjct: 446 --HGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSY------------- 490

Query: 549 EYDPRAFSLLEEAASFGIVPCVS 571
               RA  LL E    G+VP V+
Sbjct: 491 ----RALRLLNEMVHSGMVPNVA 509



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 146/352 (41%), Gaps = 42/352 (11%)

Query: 30  HSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+Y    N   +QG   E   + E+M R G                              
Sbjct: 229 HTYSVLMNGFFKQGLQREGFQMYENMNRSG------------------------------ 258

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           +VPN     +N L+S   +    + AF+V   ++E G+      Y  LI    +  K   
Sbjct: 259 IVPNAY--AYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGE 316

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++ H++   G+ PN+ TY  LI+G    G++  A   +  ++S  + P  V +N LI 
Sbjct: 317 AVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIA 376

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              +   +  A D++ EM  E   +    +T   L+ A A     D+A E++ ++ K  +
Sbjct: 377 GYSKVENLAGALDLVKEM--EERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGL 434

Query: 266 KGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
              P+VYT  + I+     G+ + A   +  + +  + P+ V  + +I      G    A
Sbjct: 435 --VPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRA 492

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             +L E  + G+   + S+ S MG     + W++A  L   M +  LKP+VS
Sbjct: 493 LRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVS 544


>gi|298707694|emb|CBJ26011.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1173

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 191/437 (43%), Gaps = 80/437 (18%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCK---LYTTLITTCAKSGK 142
           V +P  S   M M   AS  D       LR  +EA  LK +     LY T +    +  K
Sbjct: 122 VQDPGESRVKMWMRSAASKGDHNRVAMYLRKYREAKVLKGELPRIALYNTALRALDRCKK 181

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK-------- 194
                 VF EM + G++P+  +Y  ++  C+K G+   A      M+++  +        
Sbjct: 182 WRLALSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALLAEMKARRRQQQQQQQQQ 241

Query: 195 --------------------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
                               PD +++  ++ AC       +A  +L +M+A    V P+ 
Sbjct: 242 RAGGGPGGYGEVEDEDGAPAPDLLLYAVVMKACAWGKRWQQAIRLLDDMSA--AGVAPNV 299

Query: 235 ITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSV 291
           + +   + ACA  GQV RA ++ + M  KY +   PEV  Y   I+   + G+W  A ++
Sbjct: 300 VVVNTALSACAKCGQVSRATQLLQEMQEKYGV--APEVRSYNSVISGHERAGEWREALAL 357

Query: 292 YDDMTK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
              M +  GV+P+ V  +++I     AG+ E A  +L   + +G+   +IS++S +GAC+
Sbjct: 358 AKRMEQADGVLPNVVTFNSVIGACKTAGRPEEALAVLGMLRRKGLQPDVISFNSAIGACA 417

Query: 351 NAKNWQKALELYEHMKS-----------------IK---------------------LKP 372
           +   W+ AL+L E M S                 +K                     L+P
Sbjct: 418 SGGKWEVALQLLELMPSEGVTPDLMTYNIALDACVKGGQWEMAMSLFDELVASGDESLRP 477

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK--DDVEVGLM 430
            + T N L+T   D   LP+ +E+L + K+  L P+ +TYS L+ ACER      +V L 
Sbjct: 478 DLYTYNTLMTVFSDAGMLPRALELLEEAKAKRLRPDVVTYSTLIRACERSMPSQPDVALK 537

Query: 431 LLSQAKEDGVIPNLVMF 447
           L+S  + +GV PN   +
Sbjct: 538 LVSDMEAEGVRPNNTTY 554



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 164/340 (48%), Gaps = 13/340 (3%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D  LY  ++  CA   +      +  +M  AG+ PNV      +  CAK GQV++A    
Sbjct: 263 DLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVVVNTALSACAKCGQVSRATQLL 322

Query: 186 GIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
             M+ K  V P+   +N++I+   ++G    A   LA+   +   V P+ +T  +++ AC
Sbjct: 323 QEMQEKYGVAPEVRSYNSVISGHERAGEWREAL-ALAKRMEQADGVLPNVVTFNSVIGAC 381

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
             AG+ + A  V  M+ +  ++  P+V  +  AI  C+  G WE A  + + M  +GV P
Sbjct: 382 KTAGRPEEALAVLGMLRRKGLQ--PDVISFNSAIGACASGGKWEVALQLLELMPSEGVTP 439

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQE---AKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           D +  +  +D     G+ E A  +  E   + ++ +   + +Y++LM   S+A    +AL
Sbjct: 440 DLMTYNIALDACVKGGQWEMAMSLFDELVASGDESLRPDLYTYNTLMTVFSDAGMLPRAL 499

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           EL E  K+ +L+P V T + LI A C+     Q    ++++SDM++ G+ PN  TY  + 
Sbjct: 500 ELLEEAKAKRLRPDVVTYSTLIRA-CERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVA 558

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           ++  R       L LL      G  P+ + +  ++ +  R
Sbjct: 559 ISLGRSARPLECLDLLRSMHGKGTPPDAICYLAVLKVLDR 598



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 114/530 (21%), Positives = 203/530 (38%), Gaps = 127/530 (23%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           + V+ ++ SYN +I    R G   E + L + ME+   +  + V        CK+    +
Sbjct: 329 YGVAPEVRSYNSVISGHERAGEWREALALAKRMEQADGVLPNVVTFNSVIGACKTAGRPE 388

Query: 79  EAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA     ++      P + +FN  +  CAS    E A Q+L L+   G+  D   Y   +
Sbjct: 389 EALAVLGMLRRKGLQPDVISFNSAIGACASGGKWEVALQLLELMPSEGVTPDLMTYNIAL 448

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIE---PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
             C K G+ +    +F E+V +G E   P+++TY  L+   + AG + +A       ++K
Sbjct: 449 DACVKGGQWEMAMSLFDELVASGDESLRPDLYTYNTLMTVFSDAGMLPRALELLEEAKAK 508

Query: 192 NVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAG 248
            ++PD V ++ LI AC +S     D A  ++++M AE V P +  ++ +   +      G
Sbjct: 509 RLRPDVVTYSTLIRACERSMPSQPDVALKLVSDMEAEGVRPNNTTYVGVAISL------G 562

Query: 249 QVDRAREVYKMIHKYNIKGTP--------------------------------------- 269
           +  R  E   ++   + KGTP                                       
Sbjct: 563 RSARPLECLDLLRSMHGKGTPPDAICYLAVLKVLDRWDLAEEASLLFEEMVETIEQIALM 622

Query: 270 -----EVYTIAINCCSQTGDWEFACSVYDDMTKKGV-----------------------I 301
                E Y   I    + G W  A ++ D   +KG                        +
Sbjct: 623 PAIAEETYCCGIRALERLGKWSEAVALLDQWRQKGSYDADNDRMYDQWYRALRLLSTGGL 682

Query: 302 PDEVFLS---ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           P+E  +    A I  A   G VE A  I++  +++G  +G++ Y + + A   A   ++ 
Sbjct: 683 PEETDVKTSRAAIVSAARGGLVEDALAIMRSMESRGFELGVVEYGAAIEAFEKAGKPERG 742

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           LE+++ M +  ++P V         LC                          Y+     
Sbjct: 743 LEMFDEMIAAGVEPDV---------LC--------------------------YAAATRC 767

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNE 466
           C R+ D    +  +     +G++P    F+ + G+C  S RYE+   L E
Sbjct: 768 CCRRLDWAGAISFVETTLREGLLPTGKTFETVAGLCRNSGRYEELWDLKE 817



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 116/293 (39%), Gaps = 41/293 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV-----PN 89
           L R G+ SE + LL+   +KG  D D   + R ++         + +R  +L+     P 
Sbjct: 637 LERLGKWSEAVALLDQWRQKGSYDAD---NDRMYD---------QWYRALRLLSTGGLPE 684

Query: 90  PT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            T + T    +   A     E A  ++R ++  G +     Y   I    K+GK +   E
Sbjct: 685 ETDVKTSRAAIVSAARGGLVEDALAIMRSMESRGFELGVVEYGAAIEAFEKAGKPERGLE 744

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM+ AG+EP+V  Y A    C +    A A         + + P    F  +   C 
Sbjct: 745 MFDEMIAAGVEPDVLCYAAATRCCCRRLDWAGAISFVETTLREGLLPTGKTFETVAGLCR 804

Query: 209 QSGAVDRAFDVLAEMNAEVHPVD------PDHITIGALMKACANAGQVDRAREVYKMIHK 262
            SG  +  +D+   M   V  VD      P      +L++AC  A + D    V + + +
Sbjct: 805 NSGRYEELWDLKELMRDIV--VDGGGLARPGSSIYVSLIRACGAARRPDL---VLRCLAE 859

Query: 263 YNIKGTP----------EVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPD 303
            N    P          E Y +  AI   S  G+   A  +Y D  ++ ++PD
Sbjct: 860 MNTDQAPGKSPGTLALEEPYMVSAAIGALSACGETSEADRIYADAIRRRILPD 912



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           G+    +VK  R    A I +  + G V+ A  ++  M  E    +   +  GA ++A  
Sbjct: 681 GLPEETDVKTSR----AAIVSAARGGLVEDALAIMRSM--ESRGFELGVVEYGAAIEAFE 734

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            AG+ +R  E++  +    ++     Y  A  CC +  DW  A S  +   ++G++P   
Sbjct: 735 KAGKPERGLEMFDEMIAAGVEPDVLCYAAATRCCCRRLDWAGAISFVETTLREGLLPTGK 794

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS------YSSLMGACSNAKN 354
               +     ++G+ E  +++ +  ++  +  G ++      Y SL+ AC  A+ 
Sbjct: 795 TFETVAGLCRNSGRYEELWDLKELMRDIVVDGGGLARPGSSIYVSLIRACGAARR 849


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 170/363 (46%), Gaps = 15/363 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P  ST++ ++    ++   E AFQ+ + ++  G+  D  +YTTLI +  K+G ++     
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   G  PNV TY ALI    K+ +V+KA   Y +M SK   P+ V + ALI    +
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCK 339

Query: 210 SGAVDRA---FDVLAEMNAEVHPVD------------PDHITIGALMKACANAGQVDRAR 254
           +G +++A   + ++ + N E+  VD            P+  T GAL+     A QV  AR
Sbjct: 340 AGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEAR 399

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           ++ K +     +    VY   I+ C + G  + A  V+  M + G  P+    S+LID  
Sbjct: 400 DLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRL 459

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               +++ A ++L +      +  ++ Y+ ++          +A +L   M+     P V
Sbjct: 460 FKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNV 519

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T  A+I       ++ K +E+L  M S G  PN +TY +L+  C     ++    LL +
Sbjct: 520 VTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEE 579

Query: 435 AKE 437
            K+
Sbjct: 580 MKQ 582



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 164/367 (44%), Gaps = 27/367 (7%)

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
           S+C S K  E     L L+++     D  LYT +I+   ++   +   +    M  +   
Sbjct: 19  SLCKSGKWREA----LSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCL 74

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PNV TY  L+ GC    ++ +      +M ++   P   +FN+L+ A  +SG    A+ +
Sbjct: 75  PNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKL 134

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQ-----VDRAREVYK-------MIHKYNIKG 267
           L +M        P ++    L+    ++ +     +D A + Y        +++K NI  
Sbjct: 135 LKKMVQ--CGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISN 192

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
                     C    G +E A +V  +M  KG IPD    S +I +  +A KVE AF++ 
Sbjct: 193 FSR-------CLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLF 245

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           QE K  GI+  +  Y++L+ +   A   ++A   ++ M+     P V T  ALI A    
Sbjct: 246 QEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKS 305

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV-IPNLVM 446
            ++ K  EV   M S G  PN +TY+ L+    +   +E    +    K++ V IP++ M
Sbjct: 306 RKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDM 365

Query: 447 -FKCIIG 452
            F+ + G
Sbjct: 366 HFRVVDG 372



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 156/380 (41%), Gaps = 62/380 (16%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L +  ++ E  DLL+ M  +G      VY A     CK+ K + EA   F  +     +P
Sbjct: 389 LCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGK-LDEAQEVFTTMLECGYDP 447

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T++ L+      K  + A +VL  + E     +  +YT +I    K GK D  +++ 
Sbjct: 448 NVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM 507

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M   G  PNV TY A+IDG  K+G+V K       M SK   P+ V +  LI  C  +
Sbjct: 508 VMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCST 567

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D A  +L EM        P H+           AG         K+I  +N      
Sbjct: 568 GLLDEAHKLLEEMKQTYW---PRHV-----------AG-------YRKVIEGFN------ 600

Query: 271 VYTIAINCCSQTGDWEFACSVY--DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
                          EF  S+Y   ++++   +P       LID    AG++E A E+ +
Sbjct: 601 --------------REFIASLYLSFEISENDSVPVAPVYRVLIDNFIKAGRLEIALELNE 646

Query: 329 E--------AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E        A NQ I + +I   SL      A    KA ELY  M S    P +S +  L
Sbjct: 647 ELSSFSPFSAANQNIHITLIENLSL------AHKADKAFELYADMISRGSIPELSILVHL 700

Query: 381 ITALCDGDQLPKTMEVLSDM 400
           I  L   ++  + +++L  +
Sbjct: 701 IKGLLRVNRWEEALQLLDSI 720


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 181/422 (42%), Gaps = 40/422 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFR-FFKLVPN 89
           N +  QG + E + LL D+   G       Y+A    +C +++   ++E      ++   
Sbjct: 237 NAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACP 296

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN L+S    +   E   +VL  + E G   D ++Y T+I    K G ++   E+
Sbjct: 297 PNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEI 356

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M + G++PNV  Y  L+ G   A +  +       M  K+   D V FN L+    Q
Sbjct: 357 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 416

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G VDR  ++L +M    H   PD IT   ++      G +D A  + K +     K   
Sbjct: 417 NGLVDRVIELLEQMLE--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNT 474

Query: 270 EVYTIA-----------------------------------INCCSQTGDWEFACSVYDD 294
             YTI                                    IN   + G  E A  +   
Sbjct: 475 ISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQ 534

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G  PD +  S +ID  G AGK + A E+L    N+G+S   I YSS+  A S    
Sbjct: 535 MLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGR 594

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             K ++++++++   ++      NA+I++LC   +  + +E L+ M S G  PN  TY+I
Sbjct: 595 INKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTI 654

Query: 415 LL 416
           L+
Sbjct: 655 LI 656



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/490 (22%), Positives = 200/490 (40%), Gaps = 54/490 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V    ++Y  ++R    +GRI++ + +L++M R+G   +  +YH      C+     
Sbjct: 152 AVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGG--- 208

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              FR                            A +VL  +   G   D      ++   
Sbjct: 209 --GFR---------------------------SAVRVLEDLHARGCALDVGNCNLVLNAI 239

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--- 194
              G VD    +  ++ + G EP+V +Y A++ G      +AK +G    +  + V+   
Sbjct: 240 CDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLC----MAKRWGCVQELMEEMVRMAC 295

Query: 195 -PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+ V FN LI+   ++G  +R  +VLA+M    H   PD      ++      G ++ A
Sbjct: 296 PPNIVTFNTLISYLCRNGLFERVHEVLAQMVE--HGCTPDIRMYATIIDGICKEGHLEVA 353

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E+   +  Y +K     Y   +        WE    +  +M  K    D+V  + L+DF
Sbjct: 354 HEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDF 413

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G V+   E+L++    G    +I+Y++++          +A+ L + M +   KP 
Sbjct: 414 FCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 473

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLL 432
             +   ++  LC  ++     +++S M   G CP N IT++ L+    +K  VE  + LL
Sbjct: 474 TISYTIVLKGLCSAERWVDAEDLMSQMIQQG-CPLNPITFNTLINFLCKKGLVEQAIELL 532

Query: 433 SQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 489
            Q   +G  P+L+ +  +I   G   +  E    LN  V   N G       ++S+A  +
Sbjct: 533 KQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMV---NKGMSPNTIIYSSIASAL 589

Query: 490 YREAIVAGTI 499
            RE  +   I
Sbjct: 590 SREGRINKVI 599



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 125/267 (46%), Gaps = 7/267 (2%)

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +NA++    ++G ++ A  + A +     PV P+  T   +++A    G++  A  V   
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAV-----PVPPNAYTYFPVVRALCARGRIADALAVLDE 184

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +      P +Y + +    + G +  A  V +D+  +G   D    + +++     G 
Sbjct: 185 MPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGS 244

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           V+ A  +L++  + G    ++SY++++     AK W    EL E M  +   P + T N 
Sbjct: 245 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 304

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI+ LC      +  EVL+ M   G  P+   Y+ ++    ++  +EV   +L++    G
Sbjct: 305 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 364

Query: 440 VIPNLVMFKCII-GMCS-RRYEKARTL 464
           + PN+V +  ++ G+CS  R+E+   L
Sbjct: 365 LKPNVVCYNTLLKGLCSAERWEETEEL 391



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/182 (17%), Positives = 82/182 (45%), Gaps = 5/182 (2%)

Query: 46  DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSV 101
           DL+  M ++G   ++ +      N    +  +++A    K +     +P L +++ ++  
Sbjct: 495 DLMSQMIQQGC-PLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 553

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
              +  ++ A ++L ++   G+  +  +Y+++ +  ++ G+++ + ++F  + +  I  +
Sbjct: 554 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSD 613

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
              Y A+I    K G+  +A      M S    P+   +  LI      G V  A ++L 
Sbjct: 614 AVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLT 673

Query: 222 EM 223
           E+
Sbjct: 674 EL 675


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 199/420 (47%), Gaps = 17/420 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           N L  +GR+SE ++L++ M   G    L+ ++ + +     +C S K  +      K+V 
Sbjct: 166 NGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNG----LCLSGKEAEAMLLIDKMVE 221

Query: 89  ---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P   T+  +++V   S  +  A ++LR ++E  +K D   Y+ +I    K G +D 
Sbjct: 222 YGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDN 281

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            F +F+EM   GI  N+ TY  LI G   AG+          M  + + P+ V F+ LI 
Sbjct: 282 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 341

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
           +  + G +  A ++  EM   +H  + PD IT  +L+        +D+A ++  ++    
Sbjct: 342 SFVKEGKLREAEELHKEM---IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
                  + I IN   +    +    ++  M+ +GV+ D V  + LI      GK+  A 
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458

Query: 325 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           E+ QE  ++ +   I++Y  L+ G C N ++ +KALE++E ++  K++  +   N +I  
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGES-EKALEIFEKIEKSKMELDIGIYNIIIHG 517

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           +C+  ++    ++   +   G+ P   TY+I++    +K  +    +L  + +EDG  P+
Sbjct: 518 MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 177/404 (43%), Gaps = 44/404 (10%)

Query: 71  CKSQK---AIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKAD 126
           C+ +K   A     +  KL   P   TF+ L++ +C   + SE    V R+V E G K D
Sbjct: 134 CRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV-EMGHKPD 192

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
                TL+     SGK      +  +MV  G +PN  TYG +++   K+GQ A A     
Sbjct: 193 LITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLR 252

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M  +N+K D V ++ +I    + G++D AF++  EM  E+  +  + IT   L+    N
Sbjct: 253 KMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM--EMKGITTNIITYNILIGGFCN 310

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           AG+                                   W+    +  DM K+ + P+ V 
Sbjct: 311 AGR-----------------------------------WDDGAKLLRDMIKRKINPNVVT 335

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            S LID     GK+  A E+ +E  ++GI+   I+Y+SL+       +  KA ++ + M 
Sbjct: 336 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 395

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           S    P + T N LI   C  +++   +E+   M   G+  +T+TY+ L+        + 
Sbjct: 396 SKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN 455

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
           V   L  +     V PN+V +K ++ G+C     EKA  + E +
Sbjct: 456 VAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 149/326 (45%), Gaps = 3/326 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           ++ L +  AK+ + D +  +  +M   GI  N++T   +I+   +  ++  AF A G + 
Sbjct: 91  FSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKII 150

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               +P+ + F+ LI      G V  A +++  M    H   PD ITI  L+     +G+
Sbjct: 151 KLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK--PDLITINTLVNGLCLSGK 208

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
              A  +   + +Y  +     Y   +N   ++G    A  +   M ++ +  D V  S 
Sbjct: 209 EAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSI 268

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           +ID     G ++ AF +  E + +GI+  II+Y+ L+G   NA  W    +L   M   K
Sbjct: 269 IIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK 328

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           + P V T + LI +     +L +  E+  +M   G+ P+TITY+ L+    +++ ++   
Sbjct: 329 INPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKAN 388

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMC 454
            ++      G  PN+  F  +I G C
Sbjct: 389 QMVDLMVSKGCDPNIRTFNILINGYC 414



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 162/371 (43%), Gaps = 13/371 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFFKLVPNPT 91
           L + G +    +L  +ME KG+      Y+     F N  +     K      K   NP 
Sbjct: 273 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 332

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + TF++L+           A ++ + +   G+  D   YT+LI    K   +D   ++  
Sbjct: 333 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 392

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            MV+ G +PN+ T+  LI+G  KA ++      +  M  + V  D V +N LI    + G
Sbjct: 393 LMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 452

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A ++  EM +   P  P+ +T   L+    + G+ ++A E+++ I K  ++    +
Sbjct: 453 KLNVAKELFQEMVSRKVP--PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGI 510

Query: 272 YTIAIN--CCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           Y I I+  C +   D  W+  CS    +  KGV P     + +I      G +  A  + 
Sbjct: 511 YNIIIHGMCNASKVDDAWDLFCS----LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 566

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++ +  G +    +Y+ L+ A     +  K+++L E +K        ST+  +I  L DG
Sbjct: 567 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDG 626

Query: 388 DQLPKTMEVLS 398
                 +++LS
Sbjct: 627 RLKKSFLDMLS 637


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 187/372 (50%), Gaps = 23/372 (6%)

Query: 93  STFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +TFN ML  +C++ K +  A ++LR +     + +   Y T+I      G+V A  ++  
Sbjct: 115 TTFNIMLRHLCSAGKPAR-ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMR 169

Query: 152 EMV-NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQ 209
           EM    GI PN +TYG +I G  K G+V +A   +  M +K  VKP+ V++NALI     
Sbjct: 170 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 229

Query: 210 SGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            G +D A    D + E    +        T   L+ A    G   R  E Y+++ +   K
Sbjct: 230 QGKLDTALLYRDRMVERGVAMTVA-----TYNLLVHALFMDG---RGTEAYELVEEMGGK 281

Query: 267 G-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G  P+V+T  I IN   + G+ + A  ++++M+++GV    V  +ALI      G+V+  
Sbjct: 282 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQET 341

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            ++  EA  +GI   ++ Y++L+ + S + N  +A E+   M+  ++ P   T N L+  
Sbjct: 342 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRG 401

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++ +  +++ +M   G+ P+ +TY+ L+     K DV+  L + ++    G  P 
Sbjct: 402 LCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPT 461

Query: 444 LVMFKCII-GMC 454
           L+ +  +I G+C
Sbjct: 462 LLTYNALIQGLC 473



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 197/420 (46%), Gaps = 11/420 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           L  DM R  L      ++    ++C + K  + A    + +P P   T+N +++   S  
Sbjct: 101 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPAR-ALELLRQMPRPNAVTYNTVIAGFCSRG 159

Query: 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHT 164
             + A  ++R ++E  G+  +   Y T+I+   K G+VD   +VF EM+  G ++P    
Sbjct: 160 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 219

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y ALI G    G++  A      M  + V      +N L+ A    G    A++++ EM 
Sbjct: 220 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 279

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
            +   + PD  T   L+      G V +A E+++ + +  ++ T   YT  I   S+ G 
Sbjct: 280 GK--GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQ 337

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            +    ++D+  ++G+ PD V  +ALI+    +G ++ AFEI+ E + + I+   ++Y++
Sbjct: 338 VQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNT 397

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           LM          +A +L + M    ++P + T N LI+       +   + + ++M + G
Sbjct: 398 LMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKG 457

Query: 405 LCPNTITYSILLVA-CE--RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 461
             P  +TY+ L+   C+  + DD E    ++ +  E+G+ P+   +  +I   +   E+A
Sbjct: 458 FNPTLLTYNALIQGLCKNGQGDDAE---NMVKEMVENGITPDDSTYISLIEGLTTEDERA 514



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 37/253 (14%)

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           +  +    K+  + +   S   L+ A  +A     A  L+  M  ++L    +T N ++ 
Sbjct: 67  SLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLR 122

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVI 441
            LC   +  + +E+L  M      PN +TY+ ++     +  V+  L ++ + +E  G+ 
Sbjct: 123 HLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIA 178

Query: 442 PNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 499
           PN   +  +I G C   R ++A  + + +L+    +P+           V   A++ G  
Sbjct: 179 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEA----------VMYNALIGGYC 228

Query: 500 PTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCS--LIDGFGEYDPRAFSL 557
              ++ + +L           R+R+VE  GV+      + L     +DG G     A+ L
Sbjct: 229 DQGKLDTALL----------YRDRMVER-GVAMTVATYNLLVHALFMDGRGT---EAYEL 274

Query: 558 LEEAASFGIVPCV 570
           +EE    G+ P V
Sbjct: 275 VEEMGGKGLAPDV 287


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/454 (23%), Positives = 211/454 (46%), Gaps = 19/454 (4%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A +   L++E G     +    +++  ++  +++  +  + +M    I+ NV+T+  +I+
Sbjct: 175 AIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMIN 234

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
              K G++ KA G  GIM S  +KP  V +N L+      G ++ A  +++EM ++    
Sbjct: 235 VLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSK--GF 292

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD  T   ++    N G   RA EV + +    +      Y I I  CS  GD E A +
Sbjct: 293 QPDLQTYNPILSWMCNEG---RASEVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFA 349

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
             D+M K+G++P     + LI       K+EAA  +++E + +GI +  ++Y+ ++    
Sbjct: 350 YRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYC 409

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
              + +KA  L++ M +  +KPT  T  +LI  LC  ++  +  E+   +   G+ P+ +
Sbjct: 410 QHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLV 469

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTL---- 464
             + L+       +++    LL +     + P+ V + C++ G+C   ++E+AR L    
Sbjct: 470 MMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEM 529

Query: 465 ------NEHVLSFNSGRPQIENKW-TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517
                  +H+ S+N+       K  T  A +V  E +  G  PT+   + +L  L    +
Sbjct: 530 KRRGIKPDHI-SYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQD 588

Query: 518 ADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 551
            ++ E L+  +         S+ CS+I+   + D
Sbjct: 589 GELAEELLREMKSEGIVPNDSSFCSVIEAMSKSD 622



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 187/432 (43%), Gaps = 12/432 (2%)

Query: 30  HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89
           H  + L R  RI        DM R  +      ++     +CK  K +K+A  F  ++ +
Sbjct: 196 HILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGK-LKKAKGFLGIMES 254

Query: 90  ----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               PT+ T+N L+   +     EGA  ++  ++  G + D + Y  +++     G+   
Sbjct: 255 FGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRAS- 313

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             EV  EM   G+ P+  +Y  LI GC+  G +  AF     M  + + P    +N LI 
Sbjct: 314 --EVLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIH 371

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
                  ++ A  ++ E+  +   +  D +T   ++      G   +A  ++  +    I
Sbjct: 372 GLFMENKIEAAEILIREIREK--GIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGI 429

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K T   YT  I    +      A  +++ +  KG+ PD V ++ L+D     G ++ AF 
Sbjct: 430 KPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFS 489

Query: 326 ILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +L+E     I    ++Y+ LM G C   K +++A EL   MK   +KP   + N LI+  
Sbjct: 490 LLKEMDRMNIDPDDVTYNCLMRGLCGEGK-FEEARELMGEMKRRGIKPDHISYNTLISGY 548

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
                      V  +M SLG  P  +TY+ LL    +  D E+   LL + K +G++PN 
Sbjct: 549 SKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPND 608

Query: 445 VMFKCIIGMCSR 456
             F  +I   S+
Sbjct: 609 SSFCSVIEAMSK 620



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 157/336 (46%), Gaps = 7/336 (2%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P L T+N ++S +C   + SE    VLR ++  GL  D   Y  LI  C+ +G ++  F 
Sbjct: 294 PDLQTYNPILSWMCNEGRASE----VLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFA 349

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EMV  G+ P  +TY  LI G     ++  A      +R K +  D V +N +I    
Sbjct: 350 YRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYC 409

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           Q G   +AF +  EM  +   + P   T  +L+       +   A E+++ +    +K  
Sbjct: 410 QHGDAKKAFALHDEMMTD--GIKPTQFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPD 467

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             +    ++    TG+ + A S+  +M +  + PD+V  + L+      GK E A E++ 
Sbjct: 468 LVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMG 527

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E K +GI    ISY++L+   S   + + A  + + M S+   PT+ T NAL+  L    
Sbjct: 528 EMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSKNQ 587

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
                 E+L +MKS G+ PN  ++  ++ A  + D+
Sbjct: 588 DGELAEELLREMKSEGIVPNDSSFCSVIEAMSKSDN 623



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 112/275 (40%), Gaps = 11/275 (4%)

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           +    ++ F      V+ A E     K +G      + + ++   S     + A   Y  
Sbjct: 157 ILFDFMVRFYCQLRMVDEAIECFYLMKEKGFDPKTETCNHILSLLSRLNRIENAWVFYAD 216

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M  +++K  V T N +I  LC   +L K    L  M+S G+ P  +TY+ L+     +  
Sbjct: 217 MYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLRGR 276

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-------RYEKARTLNEHVLSFNSGRP 476
           +E   M++S+ K  G  P+L  +  I+  MC+        R  K   L    +S+N    
Sbjct: 277 IEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASEVLREMKGIGLVPDSVSYNILIR 336

Query: 477 QIENKWTSLALMVYREAIV-AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 535
              N         YR+ +V  G +PT    + ++  L +    +  E L+  +      L
Sbjct: 337 GCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVL 396

Query: 536 KRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 568
                  +I+G+ ++    +AF+L +E  + GI P
Sbjct: 397 DSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKP 431


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 178/388 (45%), Gaps = 10/388 (2%)

Query: 81  FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           FR+ K   N       +NM++ + A    ++ A  +   +QE   K D + Y  +I    
Sbjct: 138 FRWLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHG 197

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           ++G+      +  +M+ A I P+  TY  LI+ C  +G   +A      M    V PD V
Sbjct: 198 RAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLV 257

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
             N +++A        +A     E+    H + PD  T+  ++       Q D+A E++ 
Sbjct: 258 THNIILSAFKSGAQYSKALSYF-ELMKGTH-IRPDTTTLNIVIHCLVKLRQYDKAIEIFN 315

Query: 259 MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            + +   + TP+V  +T  I+  S  G  E   + ++ M  +G+ P+ V  +ALI     
Sbjct: 316 SMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAA 375

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G    A     E K  G    I+SY+SL+ A   ++   KA ++++ MK  KLKP + +
Sbjct: 376 RGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVS 435

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQA 435
            NALI A      L   +++L +M+  G+ PN ++   LL AC R    V++   +L+ A
Sbjct: 436 YNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKID-TVLTAA 494

Query: 436 KEDGVIPNLVMFKCIIGMCSR--RYEKA 461
           +  G+  N V +   IG C     Y+KA
Sbjct: 495 EMRGIKLNTVAYNAAIGSCMNVGEYDKA 522



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/452 (22%), Positives = 200/452 (44%), Gaps = 15/452 (3%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + +YN +I    R G+    +++++DM R  +      Y+    N C S    KEA    
Sbjct: 186 VETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYN-NLINACGSSGNWKEALNVC 244

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           K +      P L T N+++S   S      A     L++   ++ D      +I    K 
Sbjct: 245 KKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKL 304

Query: 141 GKVDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
            + D   E+F+ M     E  P+V T+ ++I   +  GQV     A+ +M ++ +KP+ V
Sbjct: 305 RQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIV 364

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +NALI A    G  + A     E+  + +   PD ++  +L+ A   + +  +AR+++ 
Sbjct: 365 SYNALIGAYAARGMDNEAHLFFNEI--KQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFD 422

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + +  +K     Y   I+     G    A  +  +M ++G+ P+ V +  L+   G   
Sbjct: 423 RMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCS 482

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +      +L  A+ +GI +  ++Y++ +G+C N   + KA+ LY+ M+  K+K    T  
Sbjct: 483 RKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYT 542

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI+  C   +  + +  + ++  L L  +   YS  + A  ++  +       +  K  
Sbjct: 543 VLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSS 602

Query: 439 GVIPNLVMFKCIIGM--CSRRYEKARTLNEHV 468
           G  P++V +  ++     +  +EKA  L E +
Sbjct: 603 GCYPDVVTYTAMLDAYNAAENWEKAYALFEEM 634



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 151/315 (47%), Gaps = 8/315 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + ++N L+   A+      A      +++ G + D   YT+L+    +S K     ++
Sbjct: 361 PNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQI 420

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M    ++PN+ +Y ALID     G +A A      M  + ++P+ V    L+ ACG+
Sbjct: 421 FDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGR 480

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
                +   VL    AE+  +  + +   A + +C N G+ D+A  +YK + K  IK   
Sbjct: 481 CSRKVKIDTVLTA--AEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDS 538

Query: 270 EVYTIAINCCSQTGDWEFACSVYDD-MTKKGVIPDEVFLSALIDFA--GHAGKVEAAFEI 326
             YT+ I+ C +   +  A S  ++ M  K  +  EV+ SA+  ++  G   + E+ F +
Sbjct: 539 VTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNL 598

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +   K+ G    +++Y++++ A + A+NW+KA  L+E M++  +K       AL+ +   
Sbjct: 599 M---KSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNK 655

Query: 387 GDQLPKTMEVLSDMK 401
           G Q  + + +   M+
Sbjct: 656 GGQPGRVLSLAESMR 670



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 187/436 (42%), Gaps = 15/436 (3%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKA 76
           A  +   + SYN LI     +G  +E      ++++ G    D V +    N   +SQK 
Sbjct: 356 AEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRP-DIVSYTSLLNAYGRSQKP 414

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            K    F ++  N   P L ++N L+    S+     A ++LR +++ G++ +     TL
Sbjct: 415 HKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTL 474

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +  C +  +   +  V       GI+ N   Y A I  C   G+  KA G Y  MR K +
Sbjct: 475 LAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKI 534

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           K D V +  LI+ C +      A   + E+     P+  +     + + A +  GQ+  A
Sbjct: 535 KTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKE--VYSSAICAYSKQGQIVEA 592

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
              + ++           YT  ++  +   +WE A +++++M    +  D +  +AL+  
Sbjct: 593 ESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRS 652

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G+      + +  + + I      +  ++ ACS  ++W+ A+++ ++++     P 
Sbjct: 653 FNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPS--LPV 710

Query: 374 VST--MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           +S+  +N  + +L    ++   +++   M + G   N  TYSILL       +    L +
Sbjct: 711 ISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLEV 770

Query: 432 LSQAKEDGVIPNLVMF 447
           L   ++ G+ P+  M+
Sbjct: 771 LQWMEDAGIHPSKEMY 786



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 123/266 (46%), Gaps = 9/266 (3%)

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           R  F  LI    Q G+++    V   +  + +    + I    +++  A   + D+AR +
Sbjct: 115 RKNFPFLIKELTQRGSIEHCNRVFRWLKNQKNYRARNDI-YNMMIRLHARHNRTDQARGL 173

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  + ++  K   E Y   IN   + G W +A ++ DDM +  + P     + LI+  G 
Sbjct: 174 FFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGS 233

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           +G  + A  + ++    G+   +++++ ++ A  +   + KAL  +E MK   ++P  +T
Sbjct: 234 SGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTT 293

Query: 377 MNALITALCDGDQLPKTMEVLSDM--KSLGLCPNTITYSI---LLVACERKDDVEVGLML 431
           +N +I  L    Q  K +E+ + M  K     P+ +T++    L   C + ++ E    +
Sbjct: 294 LNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNM 353

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSRR 457
           +     +G+ PN+V +  +IG  + R
Sbjct: 354 MIA---EGLKPNIVSYNALIGAYAAR 376



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/124 (19%), Positives = 56/124 (45%), Gaps = 4/124 (3%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           + F  ++S C+  +D   A  +++ ++ +            + +  KSGK++ M ++F +
Sbjct: 679 TIFFEMVSACSILQDWRTAVDMIKYIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFK 738

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT----ACG 208
           M+ +G + N++TY  L+     +G   K       M    + P + +++ + +     CG
Sbjct: 739 MLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSKEMYHDISSFSQKCCG 798

Query: 209 QSGA 212
              A
Sbjct: 799 NENA 802


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 187/372 (50%), Gaps = 23/372 (6%)

Query: 93  STFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +TFN ML  +C++ K +  A ++LR +     + +   Y T+I      G+V A  ++  
Sbjct: 489 TTFNIMLRHLCSAGKPAR-ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMR 543

Query: 152 EMV-NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQ 209
           EM    GI PN +TYG +I G  K G+V +A   +  M +K  VKP+ V++NALI     
Sbjct: 544 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 603

Query: 210 SGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            G +D A    D + E    +        T   L+ A    G   R  E Y+++ +   K
Sbjct: 604 QGKLDTALLYRDRMVERGVAMTVA-----TYNLLVHALFMDG---RGTEAYELVEEMGGK 655

Query: 267 G-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G  P+V+T  I IN   + G+ + A  ++++M+++GV    V  +ALI      G+V+  
Sbjct: 656 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQET 715

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            ++  EA  +GI   ++ Y++L+ + S + N  +A E+   M+  ++ P   T N L+  
Sbjct: 716 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRG 775

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++ +  +++ +M   G+ P+ +TY+ L+     K DV+  L + ++    G  P 
Sbjct: 776 LCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPT 835

Query: 444 LVMFKCII-GMC 454
           L+ +  +I G+C
Sbjct: 836 LLTYNALIQGLC 847



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 197/420 (46%), Gaps = 11/420 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           L  DM R  L      ++    ++C + K  + A    + +P P   T+N +++   S  
Sbjct: 475 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPAR-ALELLRQMPRPNAVTYNTVIAGFCSRG 533

Query: 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHT 164
             + A  ++R ++E  G+  +   Y T+I+   K G+VD   +VF EM+  G ++P    
Sbjct: 534 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 593

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y ALI G    G++  A      M  + V      +N L+ A    G    A++++ EM 
Sbjct: 594 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 653

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
            +   + PD  T   L+      G V +A E+++ + +  ++ T   YT  I   S+ G 
Sbjct: 654 GKG--LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQ 711

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            +    ++D+  ++G+ PD V  +ALI+    +G ++ AFEI+ E + + I+   ++Y++
Sbjct: 712 VQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNT 771

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           LM          +A +L + M    ++P + T N LI+       +   + + ++M + G
Sbjct: 772 LMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKG 831

Query: 405 LCPNTITYSILLVA-CE--RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 461
             P  +TY+ L+   C+  + DD E    ++ +  E+G+ P+   +  +I   +   E+A
Sbjct: 832 FNPTLLTYNALIQGLCKNGQGDDAE---NMVKEMVENGITPDDSTYISLIEGLTTEDERA 888



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 125/292 (42%), Gaps = 12/292 (4%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+   A     A +   Y  M+S ++       + L++A   + A    F + A+M    
Sbjct: 428 LLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAPA----FALFADMFRLR 483

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
            P+     T   +++   +AG+  RA E+ + + + N       Y   I      G  + 
Sbjct: 484 LPLC--TTTFNIMLRHLCSAGKPARALELLRQMPRPNAV----TYNTVIAGFCSRGRVQA 537

Query: 288 ACSVYDDMTKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSL 345
           A  +  +M ++G + P++     +I      G+V+ A ++  E   +G +    + Y++L
Sbjct: 538 ALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNAL 597

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +G   +      AL   + M    +  TV+T N L+ AL    +  +  E++ +M   GL
Sbjct: 598 IGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGL 657

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
            P+  TY+IL+    ++ +V+  L +       GV   +V +  +I   S++
Sbjct: 658 APDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 709



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 37/253 (14%)

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           +  +    K+  + +   S   L+ A  +A     A  L+  M  ++L    +T N ++ 
Sbjct: 441 SLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLR 496

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVI 441
            LC   +  + +E+L  M      PN +TY+ ++     +  V+  L ++ + +E  G+ 
Sbjct: 497 HLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIA 552

Query: 442 PNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 499
           PN   +  +I G C   R ++A  + + +L+    +P+           V   A++ G  
Sbjct: 553 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE----------AVMYNALIGGYC 602

Query: 500 PTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCS--LIDGFGEYDPRAFSL 557
              ++ + +L           R+R+VE  GV+      + L     +DG G     A+ L
Sbjct: 603 DQGKLDTALL----------YRDRMVER-GVAMTVATYNLLVHALFMDGRGT---EAYEL 648

Query: 558 LEEAASFGIVPCV 570
           +EE    G+ P V
Sbjct: 649 VEEMGGKGLAPDV 661


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 199/425 (46%), Gaps = 11/425 (2%)

Query: 33  NRLIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAF----RFFKLV 87
           N    +GR+SE + L++ M E K   D+  V  +   N    +  + EA     R  +  
Sbjct: 148 NGFCLEGRVSEAVALVDRMVEMKQRPDL--VTVSTLINGLCLKGRVSEALVLIDRMVEYG 205

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P   T+  +++    S +S  A  + R ++E  +KA    Y+ +I +  K G  D   
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 265

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F+EM   GI+ +V TY +LI G    G+          M  +N+ PD V F+ALI   
Sbjct: 266 SLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVF 325

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G +  A ++  EM      + PD IT  +L+        +  A +++ ++     + 
Sbjct: 326 VKEGKLLEAKELYNEMIT--RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP 383

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y+I IN   +    +    ++ +++ KG+IP+ +  + L+     +GK+ AA E+ 
Sbjct: 384 DIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELF 443

Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           QE  ++G+   +++Y  L+ G C N +   KALE++E M+  ++   +   N +I  +C+
Sbjct: 444 QEMVSRGVPPSVVTYGILLDGLCDNGE-LNKALEIFEKMQKSRMTLGIGIYNIIIHGMCN 502

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             ++     +   +   G+ P+ +TY++++    +K  +    ML  + KEDG  P+   
Sbjct: 503 ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFT 562

Query: 447 FKCII 451
           +  +I
Sbjct: 563 YNILI 567



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 211/466 (45%), Gaps = 21/466 (4%)

Query: 8   MLQFPYP-NGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR 66
           M+Q   P N K +N+    ++ L     L+    I+E     ++  R G++D+       
Sbjct: 1   MIQRLIPLNRKASNF----TQILEKGTSLLHYSSITEAKLSYKERLRNGIVDI------- 49

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
                K   AI       +  P PT   FN L S  A +K  +      + ++  G++ D
Sbjct: 50  -----KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHD 104

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
               T +I    +  K+   F V       G EP+  T+  L++G    G+V++A     
Sbjct: 105 MYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVD 164

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M     +PD V  + LI      G V  A  VL +   E +   PD +T G ++     
Sbjct: 165 RMVEMKQRPDLVTVSTLINGLCLKGRVSEAL-VLIDRMVE-YGFQPDEVTYGPVLNRLCK 222

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           +G    A ++++ + + NIK +   Y+I I+   + G ++ A S++++M  KG+  D V 
Sbjct: 223 SGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVT 282

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            S+LI    + GK +   ++L+E   + I   ++++S+L+          +A ELY  M 
Sbjct: 283 YSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI 342

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +  + P   T N+LI   C  + L +  ++   M S G  P+ +TYSIL+ +  +   V+
Sbjct: 343 TRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVD 402

Query: 427 VGLMLLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKARTLNEHVLS 470
            G+ L  +    G+IPN + +   ++G C S +   A+ L + ++S
Sbjct: 403 DGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS 448



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 197/438 (44%), Gaps = 16/438 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L  +GR+SE + L++ M   G    +  Y      +CKS  +   A   F+ +    +
Sbjct: 183 NGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS-ALALDLFRKMEERNI 241

Query: 93  STFNMLMSVCASSKDSEGAFQ-VLRLVQE---AGLKADCKLYTTLITTCAKSGKVDAMFE 148
               +  S+   S   +G+F   L L  E    G+KAD   Y++LI      GK D   +
Sbjct: 242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK 301

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM+   I P+V T+ ALID   K G++ +A   Y  M ++ + PD + +N+LI    
Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC 361

Query: 209 QSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH-KYN 264
           +   +  A   FD++     E     PD +T   L+ +   A +VD    +++ I  K  
Sbjct: 362 KENCLHEANQMFDLMVSKGCE-----PDIVTYSILINSYCKAKRVDDGMRLFREISSKGL 416

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           I  T    T+ +  C Q+G    A  ++ +M  +GV P  V    L+D     G++  A 
Sbjct: 417 IPNTITYNTLVLGFC-QSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKAL 475

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           EI ++ +   +++GI  Y+ ++    NA     A  L+  +    +KP V T N +I  L
Sbjct: 476 EIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGL 535

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C    L +   +   MK  G  P+  TY+IL+ A      +   + L+ + K  G   + 
Sbjct: 536 CKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADS 595

Query: 445 VMFKCIIGMCS-RRYEKA 461
              K +I M S RR +K+
Sbjct: 596 STIKMVIDMLSDRRLDKS 613



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/316 (21%), Positives = 140/316 (44%), Gaps = 22/316 (6%)

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           +V+ A ++++ + +     TP  +    +  ++T  ++        M   G+  D   ++
Sbjct: 50  KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            +I+      K+  AF +L  A   G     I++S+L+          +A+ L + M  +
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
           K +P + T++ LI  LC   ++ + + ++  M   G  P+ +TY  +L    +  +  + 
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTL-NE--------HVLSFNS--GR 475
           L L  + +E  +  ++V +  +I  +C    ++ A +L NE         V++++S  G 
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289

Query: 476 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVS 531
              + KW   A M+ RE I    IP V   S ++       +L    ++   ++   G++
Sbjct: 290 LCNDGKWDDGAKML-REMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITR-GIA 347

Query: 532 ADALKRSNLCSLIDGF 547
            D +  +   SLIDGF
Sbjct: 348 PDTITYN---SLIDGF 360


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 165/372 (44%), Gaps = 37/372 (9%)

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
           L +++EAG+  +   Y  LI    KSG      EV+  MV  GI P+V TY  L+    K
Sbjct: 159 LPVMREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGK 218

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
              V         M ++ VKP+   +   I   GQ+   D A+ +L +M  E     PD 
Sbjct: 219 KRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHILGKM--EDSGCKPDV 276

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T   +++   +AG++  A+ V+  +   + K     Y   ++ C  +GD +    V++ 
Sbjct: 277 VTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNA 336

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G   + V  +A++D     G+V+ A  +  E K +G+S    SY+SL+     A  
Sbjct: 337 MVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADM 396

Query: 355 WQKALEL-----------------------------------YEHMKSIKLKPTVSTMNA 379
           + +ALEL                                   YEHMKS  + P V+  NA
Sbjct: 397 FDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANA 456

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           ++ +L    +L     V  ++K++G+ P+TITY++++  C +    +  +   S   E G
Sbjct: 457 VLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESG 516

Query: 440 VIPNLVMFKCII 451
            +P+++    +I
Sbjct: 517 CVPDVLALNSLI 528



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 178/408 (43%), Gaps = 41/408 (10%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P++ T+++LM      +D +    +L  ++  G+K +   YT  I    ++ + D  + 
Sbjct: 203 SPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYH 262

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M ++G +P+V T+  +I     AG+++ A   +  M++ + KPDRV +  L+  CG
Sbjct: 263 ILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKCG 322

Query: 209 -----------------------------------QSGAVDRAFDVLAEMNAEVHPVDPD 233
                                              Q G VD A  V  EM  +   + P+
Sbjct: 323 DSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEK--GMSPE 380

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSV 291
             +  +L+     A   DRA E++   H      +P  YT  + IN   ++G    A   
Sbjct: 381 QYSYNSLISGFLKADMFDRALELFN--HMNACGPSPNGYTHVLFINYYGKSGQSLKAIQR 438

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           Y+ M  KG++PD    +A++     +G++  A  +  E K  G+S   I+Y+ ++  CS 
Sbjct: 439 YEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSK 498

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A    +A+  +  M      P V  +N+LI  L  G +  +  ++   +K + + P   T
Sbjct: 499 ASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPTNGT 558

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           Y+ LL    R+  V+  + LL +       PNL+ +  ++   S+  E
Sbjct: 559 YNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGE 606



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 181/424 (42%), Gaps = 11/424 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CKSQKA 76
           A  V   ++SY   IR      R  E   +L  ME  G    D V H     V C + + 
Sbjct: 234 ARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGC-KPDVVTHTVIIQVLCDAGRL 292

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
                 F+K+  +   P   T+  L+  C  S DS+   +V   +   G   +   YT +
Sbjct: 293 SDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAV 352

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    + G+VD    VF EM   G+ P  ++Y +LI G  KA    +A   +  M +   
Sbjct: 353 VDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGP 412

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+       I   G+SG   +A      M ++   + PD     A++ + A +G++  A
Sbjct: 413 SPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSK--GIVPDVAAANAVLYSLAGSGRLGMA 470

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           + V+  +    +      YT+ I CCS+    + A + + DM + G +PD + L++LID 
Sbjct: 471 KRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDT 530

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               GK   A+++  + K   I     +Y++L+         ++ ++L E M      P 
Sbjct: 531 LYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPN 590

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + T N ++  L    ++   +++L  M   G  P+  +Y+ ++    +++ +E    +  
Sbjct: 591 LITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFC 650

Query: 434 QAKE 437
           Q K+
Sbjct: 651 QMKK 654



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 178/432 (41%), Gaps = 11/432 (2%)

Query: 28   QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
             L +YN ++    + G ++  ID+L  M  KG       Y+   + + K ++ ++EAFR 
Sbjct: 590  NLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEER-LEEAFRM 648

Query: 84   F---KLVPNPTLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            F   K +  P  +T   +L S   +    E    V   + +AG   D   + +L+    K
Sbjct: 649  FCQMKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILK 708

Query: 140  SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
               V+   E    + + GI  N      LI    K  +  +A   +   +   V      
Sbjct: 709  KAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGS 768

Query: 200  FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
            +N+LI        +D A D+  EM        PD  T   ++ A   + +V+   +V K 
Sbjct: 769  YNSLIRGLVDENLIDIAEDLFTEMKR--LGCGPDEFTYNLILDAMGKSMRVEEMLKVQKE 826

Query: 260  IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
            +H+   + T   Y   I+   ++   E A  +Y ++  +G  P       L+D    +GK
Sbjct: 827  MHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGK 886

Query: 320  VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
            +  A  +  E    G       Y+ L+     A N +   +L+E M    + P + +   
Sbjct: 887  MVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTI 946

Query: 380  LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
            LI  LC   +L   +     +  LGL P+ I Y++L+    + + +E  + L ++ K+ G
Sbjct: 947  LIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKG 1006

Query: 440  VIPNLVMFKCII 451
            +IPNL  +  +I
Sbjct: 1007 IIPNLYTYNSLI 1018



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 142/320 (44%), Gaps = 3/320 (0%)

Query: 97   MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
            ++  +C   K  E A Q+    +  G+      Y +LI        +D   ++F EM   
Sbjct: 737  LIRHLCKHKKALE-AHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRL 795

Query: 157  GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
            G  P+  TY  ++D   K+ +V +       M  K  +   V +N +I+   +S  +++A
Sbjct: 796  GCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQA 855

Query: 217  FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             D+   + +E     P   T G L+     +G++  A  ++  + +Y  +    +Y I +
Sbjct: 856  IDLYYNLMSE--GFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILL 913

Query: 277  NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
            N     G+ E  C +++ M ++G+ PD    + LID    AG++       ++    G+ 
Sbjct: 914  NGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLE 973

Query: 337  VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
              +I Y+ L+     ++  ++A+ L+  MK   + P + T N+LI  L    +  +  ++
Sbjct: 974  PDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQM 1033

Query: 397  LSDMKSLGLCPNTITYSILL 416
              ++   G  P+  TY+ L+
Sbjct: 1034 YEELLRKGWKPSVFTYNALI 1053



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 160/363 (44%), Gaps = 36/363 (9%)

Query: 25   VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
            VS +  SYN LIR       ID+ ED+                F   K            
Sbjct: 762  VSLKTGSYNSLIRGLVDENLIDIAEDL----------------FTEMK------------ 793

Query: 85   KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            +L   P   T+N+++     S   E   +V + +   G ++    Y T+I+   KS +++
Sbjct: 794  RLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLE 853

Query: 145  AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               ++++ +++ G  P   TYG L+DG  K+G++  A   +  M     +P+  ++N L+
Sbjct: 854  QAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILL 913

Query: 205  TA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
                  G +  V + F+ + E       ++PD  +   L+     AG+++     ++ +H
Sbjct: 914  NGHRIAGNTENVCQLFEKMVEQG-----INPDIKSYTILIDTLCTAGRLNDGLCYFRQLH 968

Query: 262  KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
            +  ++    VY + I+   ++   E A S++++M KKG+IP+    ++LI   G AGK  
Sbjct: 969  ELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAA 1028

Query: 322  AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
             A ++ +E   +G    + +Y++L+   S + +   A   Y  M     +P  ST   L 
Sbjct: 1029 EAAQMYEELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSSTYMQLP 1088

Query: 382  TAL 384
              L
Sbjct: 1089 NQL 1091



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 112/546 (20%), Positives = 215/546 (39%), Gaps = 58/546 (10%)

Query: 60   DKVYHARFFNVCKSQKAIKEAFRFFK-LVPN---PTLSTFNMLMSVCASSKDSEGAFQVL 115
            D + +      C       EA  FF  +V +   P +   N L+           A+Q+ 
Sbjct: 485  DTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLF 544

Query: 116  RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
              ++E  ++     Y TL++   + GKV  + ++  EM      PN+ TY  ++D  +K 
Sbjct: 545  HKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKN 604

Query: 176  GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            G+V  A      M  K   PD   +N ++    +   ++ AF +  +M      + PD+ 
Sbjct: 605  GEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMK---KILAPDYA 661

Query: 236  TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-----YTIAINCCSQTG---DWEF 287
            T+  ++ +    G +   +E    + +Y +K    V     +++      + G     EF
Sbjct: 662  TLCTILPSFVKNGLM---KEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSIEF 718

Query: 288  ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
            A    +++  +G++ ++ FL  LI       K   A ++  + K  G+S+   SY+SL+ 
Sbjct: 719  A----ENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIR 774

Query: 348  ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
               +      A +L+  MK +   P   T N ++ A+    ++ + ++V  +M   G   
Sbjct: 775  GLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYES 834

Query: 408  NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLN 465
              +TY+ ++    +   +E  + L      +G  P    +  ++   + S +   A  L 
Sbjct: 835  TYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLF 894

Query: 466  EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE--- 522
              +L +       E   T   +++    I   T    ++  K+   ++   N DI+    
Sbjct: 895  NEMLEYGC-----EPNCTIYNILLNGHRIAGNTENVCQLFEKM---VEQGINPDIKSYTI 946

Query: 523  ------------------RLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAA 562
                              R +  LG+  D L   NL  LIDG G+ +    A SL  E  
Sbjct: 947  LIDTLCTAGRLNDGLCYFRQLHELGLEPD-LIVYNL--LIDGLGKSERIEEAVSLFNEMK 1003

Query: 563  SFGIVP 568
              GI+P
Sbjct: 1004 KKGIIP 1009



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           ++  L+   G  G +   F+++Q+   Q +   + +++++ G        + A      M
Sbjct: 106 YMLELMRAHGRVGDMAQVFDLMQK---QVVKTNVGTFATIFGGVGVEGGLRSAPVALPVM 162

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           +   +     T N LI  L       + MEV   M   G+ P+  TYS+L+VA  +K DV
Sbjct: 163 REAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDV 222

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE--HVL 469
           +  L LL++ +  GV PN+  +     +C R   +A   +E  H+L
Sbjct: 223 DTVLWLLNEMEARGVKPNVYSYT----ICIRVLGQAARFDEAYHIL 264


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 173/356 (48%), Gaps = 4/356 (1%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
             +  + ++  G   +   Y T+I    K  + D  F     M   G+EPN+ T+  +I+
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G  + G++ +       M  K   PD V +N L+    + G   +A  + AEM    + +
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVR--NGL 119

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P+ +T  +L+ +   AG ++RA E +  +H   +      YT  IN  +Q G  + A  
Sbjct: 120 SPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYR 179

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V ++MT+ G IP  V  +ALI+     G++E A  +LQ+   +G+   ++SYS+++   +
Sbjct: 180 VLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFA 239

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
             +   +A ++   M    + P   T ++LI  LC+  +L +  ++  +M ++ L P+  
Sbjct: 240 RNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEF 299

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
           TY+ L+ A  ++ D+   L L  +  + G +P+ V +  +I   ++  R ++AR L
Sbjct: 300 TYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRL 355



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 171/379 (45%), Gaps = 6/379 (1%)

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
             RFFK +      P + T+N ++      K ++ AF  LR +   GL+ +   +  +I 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              + G++    EV  EM   G  P+  TY  L++G  K G   +A   +  M    + P
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSP 121

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + V + +LI +  ++G ++RA +   +M+  V  + P+  T   ++   A  G +D A  
Sbjct: 122 NVVTYTSLINSMCKAGNLNRAMEFFDQMH--VRGLCPNERTYTTIINGFAQQGLLDEAYR 179

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           V   + +     +   Y   IN     G  E A  +  DM  KGV+PD V  S +I    
Sbjct: 180 VLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFA 239

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
              +++ AF++  E   + +    ++YSSL+      +   +A ++++ M +IKL P   
Sbjct: 240 RNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEF 299

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T   LI A C    L K + +  +M   G  P+ +TY++L+    ++   +    LL + 
Sbjct: 300 TYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKL 359

Query: 436 KEDGVIPNLVMFKCIIGMC 454
             D  IP+ V +  +I  C
Sbjct: 360 FYDDSIPSAVTYNTLIENC 378



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 185/404 (45%), Gaps = 20/404 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R GR+ E  ++L +M RKG +  +  Y+      CK     +      ++V N   
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS 120

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  L++    + +   A +    +   GL  + + YTT+I   A+ G +D  + V
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            +EM  +G  P++ TY ALI+G    G++ +A G    M  K V PD V ++ +I+   +
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFAR 240

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +DRAF +  EM  +   V PD +T  +L++      ++  A ++++ +    +    
Sbjct: 241 NQELDRAFQMKVEMIGK--SVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDE 298

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  IN   + GD   A  ++D+M +KG +PD V  + LI+      + + A  +L +
Sbjct: 299 FTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLK 358

Query: 330 AKNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPTV 374
                     ++Y++L+  C N +                  +A +++E M +   KP  
Sbjct: 359 LFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNE 418

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           +  N +I   C    + K  ++  +M  +   P+T+T   L+ A
Sbjct: 419 AIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKA 462



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 103/274 (37%), Gaps = 62/274 (22%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN-- 89
           N   ++G +++ + L ++M +KG L  D V +    N    Q   KEA R   KL  +  
Sbjct: 306 NAYCKEGDLNKALHLHDEMIQKGFLP-DAVTYNVLINGLNKQARSKEARRLLLKLFYDDS 364

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P+  T+N L+  C +                     + K    L+      G +D   +
Sbjct: 365 IPSAVTYNTLIENCCN--------------------IEFKSAVALVKGFCMKGLMDEADQ 404

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF  M+N   +PN   Y  +I G  + G V KA+  Y  M   +  P  V   AL+ A  
Sbjct: 405 VFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALF 464

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G           M+ E++ V      IG ++++C                        
Sbjct: 465 TEG-----------MDGELNEV------IGDILRSCKLT--------------------D 487

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
            E+  + +    + G+ +   ++  +M K G+IP
Sbjct: 488 AELSKVLVEINQKEGNMDMVFNLLTEMAKDGLIP 521


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 195/411 (47%), Gaps = 7/411 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---- 90
           L R+G + +  +L+++M  KG++  +   +    N    +K  K      KL+       
Sbjct: 226 LCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVF 285

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           +++T+++L+   +SS D E A ++   ++E  ++ D  +Y+++I+   + G +   F +F
Sbjct: 286 SVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALF 345

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM    I PN HTYGALI G  KAGQ+  A      M+SK V  + V+FN  +    + 
Sbjct: 346 DEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRR 405

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D A  + A M  E   ++ D  T   L        + D A+ +   + +  +K    
Sbjct: 406 GKMDEALRLQAIM--EKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVV 463

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            +T+ I    + G+   A  ++ DM KKG +P+ +  + LID      KV+ A +I  E 
Sbjct: 464 TFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEM 523

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            N+G+   + +YSSL+          +AL+L+  M+   +   V+T  ++I+ L    + 
Sbjct: 524 INKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRA 583

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            +  ++  +M  +GL P+   ++  LV    K     GL +   +  D V+
Sbjct: 584 DEAFKLYDEMMKIGLIPDDRVFTS-LVGSFHKPLTHAGLDIQKASDSDSVL 633



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/368 (22%), Positives = 179/368 (48%), Gaps = 2/368 (0%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K +  P + T+N L++     KD +G  ++L+L+++  +      Y+ LI   + SG ++
Sbjct: 245 KGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIE 304

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++F EM    IE +V+ Y ++I    + G + +AF  +  M  +++ P+   + ALI
Sbjct: 305 EAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALI 364

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               ++G ++ A  +L EM ++   VD + +     M      G++D A  +  ++ K  
Sbjct: 365 GGVCKAGQMEAAEILLLEMQSK--GVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKG 422

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           I      Y I  N   +   ++ A  + + M +KGV P+ V  +  I+     G +  A 
Sbjct: 423 INADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAE 482

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            + ++ + +G    II+Y++L+ A    +  ++A ++   M +  L P + T ++LI   
Sbjct: 483 RLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGE 542

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++ + +++ ++M+  G+  N  TY+ ++    ++   +    L  +  + G+IP+ 
Sbjct: 543 CIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDD 602

Query: 445 VMFKCIIG 452
            +F  ++G
Sbjct: 603 RVFTSLVG 610



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 132/550 (24%), Positives = 234/550 (42%), Gaps = 71/550 (12%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           +ML  VC+ ++  +   +V   V+E GL  + +    L+    + G+VD     FH MV 
Sbjct: 149 DMLFRVCSDNRLFDETIRVYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVE 208

Query: 156 AG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAV 213
           +   E  V +   +ID   + G+V KA      M  K  VKP+   +N L+ A    G  
Sbjct: 209 SNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNA--YVGRK 266

Query: 214 DR--AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           DR    ++L  M  E   V     T   L++  +++G ++ A ++++ + + NI+    V
Sbjct: 267 DRKGVDEILKLMEKE--QVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYV 324

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y+  I+   + G+ + A +++D+M+++ ++P+     ALI     AG++EAA  +L E +
Sbjct: 325 YSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQ 384

Query: 332 NQGISVGIISYSSLM-GACSNAK---------------------------NWQKALELYE 363
           ++G+ + ++ +++ M G C   K                           N    L  Y+
Sbjct: 385 SKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYD 444

Query: 364 HMKSI-------KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
             K I        +KP V T    I   C    L +   +  DM+  G  PN ITY+ L+
Sbjct: 445 EAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLI 504

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSFNS 473
            A  +K+ V+    + S+    G++P+L  +  +I G C   R  E  +  NE  L    
Sbjct: 505 DAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRL---K 561

Query: 474 GRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 521
           G  +    +TS+            A  +Y E +  G IP   V + ++G    P      
Sbjct: 562 GITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSFHKPLTHAGL 621

Query: 522 ERLVENLGVSADALKRSNLCSLIDGFGEYDPR--------AFSLLEEAASFGIVPCVSFK 573
           +  ++    S   L+R N C+      E+D +          S++E+     +   V  K
Sbjct: 622 D--IQKASDSDSVLRRENCCTWPLISAEHDGQDNIRERFGVASIVEKIVETWLRWFVHIK 679

Query: 574 EIPVVVDARK 583
            IPV    R+
Sbjct: 680 RIPVYFVLRR 689


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 191/421 (45%), Gaps = 13/421 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAF 81
           +YN +I    ++G +     L   M R GL      Y+     +C++ +     A+ +  
Sbjct: 225 TYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEM 284

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K+VP+    T+++L    + + DS+    +     + G+K      + L+    K G
Sbjct: 285 ASRKMVPDGF--TYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDG 342

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+    EV   +VN+G+      Y  LI+G  + G +  AF  +  M+S+ ++PD + +N
Sbjct: 343 KISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYN 402

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           ALI   G+   +  A D++ EM  E + V+P   T   L+ A   AGQ+++   +   + 
Sbjct: 403 ALINGLGKVERITEAHDLVIEM--EKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQ 460

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +K     Y   +N   + G    A ++ DDM  K V+P     +A+ID     G  +
Sbjct: 461 EKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTD 520

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            AF + ++ K+ G+   I++Y+ L+          +A EL + +++  L P V + N LI
Sbjct: 521 QAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLI 580

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           +A C      + +E+  +M   G+ P+  TY +L  +      V     L  Q  +  V+
Sbjct: 581 SACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVV 640

Query: 442 P 442
           P
Sbjct: 641 P 641



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/441 (23%), Positives = 207/441 (46%), Gaps = 16/441 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN +I    + G   + + L ++M  K ++     Y+       K +  ++  FR +  
Sbjct: 190 SYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIK-KGDLESGFRLWSQ 248

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      P + T+N+L+S +C + +  E A  VL  +    +  D   Y+ L    +++G
Sbjct: 249 MLRHGLKPNVITYNVLLSGLCRAGRMGETA-AVLDEMASRKMVPDGFTYSILFDGHSRTG 307

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
               M  +F E V  G++   +T   L++G  K G+++KA      + +  +    V++N
Sbjct: 308 DSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYN 367

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    Q G ++ AF +  +M + +  + PDHIT  AL+       ++  A ++   + 
Sbjct: 368 TLINGYCQIGDLEGAFSIFQQMKSRL--IRPDHITYNALINGLGKVERITEAHDLVIEME 425

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K  +  + E +   I+   + G  E    +  DM +KG+ P+ V   ++++     GK+ 
Sbjct: 426 KNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKIL 485

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  IL +   + +  G   Y++++ A     +  +A  L E MKS  + P++ T N LI
Sbjct: 486 EAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLI 545

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   Q+ +  E+L  +++ GL P+ I+Y+ L+ AC  + + +  L L  +  + G+ 
Sbjct: 546 KGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIK 605

Query: 442 PNLVMFKCI---IGMCSRRYE 459
           P+   ++ +   +G   R +E
Sbjct: 606 PSPRTYRMLFSSLGGAGRVHE 626



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 171/370 (46%), Gaps = 3/370 (0%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P   ++N++++    +     A ++   + E  +  +   Y T+I    K G +++ F
Sbjct: 184 PAPNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGF 243

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            ++ +M+  G++PNV TY  L+ G  +AG++ +       M S+ + PD   ++ L    
Sbjct: 244 RLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGH 303

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G       +  E  +    V     T   L+      G++ +A EV + +    +  
Sbjct: 304 SRTGDSQTMLSLFEE--SVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQ 361

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T  +Y   IN   Q GD E A S++  M  + + PD +  +ALI+  G   ++  A +++
Sbjct: 362 TTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLV 421

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E +  G++  + ++++L+ A   A   +K   +   M+   LKP V +  +++ A C  
Sbjct: 422 IEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKN 481

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++ + + +L DM    + P    Y+ ++ A       +   ML  + K  GV P++V +
Sbjct: 482 GKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTY 541

Query: 448 KCII-GMCSR 456
             +I G+C +
Sbjct: 542 NLLIKGLCKQ 551



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 162/346 (46%), Gaps = 6/346 (1%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM-VNAGIEPNVHTY 165
           D  GAF++L     A  + D   +   +  C  +G +D    +   M  +    PN  +Y
Sbjct: 135 DVRGAFELL---VAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSY 191

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
             +I G  KAG    A   +  M  K V P+ + +N +I    + G ++  F + ++M  
Sbjct: 192 NVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLR 251

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
             H + P+ IT   L+     AG++     V   +    +      Y+I  +  S+TGD 
Sbjct: 252 --HGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDS 309

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           +   S++++  KKGV       S L++     GK+  A E+LQ   N G+    + Y++L
Sbjct: 310 QTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTL 369

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +       + + A  +++ MKS  ++P   T NALI  L   +++ +  +++ +M+  G+
Sbjct: 370 INGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGV 429

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            P+  T++ L+ A  R   +E   ++LS  +E G+ PN+V +  I+
Sbjct: 430 NPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIV 475



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 156/350 (44%), Gaps = 40/350 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G+IS+  ++L+ +   GLL    +Y+      C+    ++ AF  F+ + +   
Sbjct: 336 NGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGD-LEGAFSIFQQMKSRLI 394

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+N L++     +    A  ++  +++ G+    + + TLI    ++G+++  F 
Sbjct: 395 RPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFI 454

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M   G++PNV +YG++++   K G++ +A      M  K+V P   V+NA+I A  
Sbjct: 455 ILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYI 514

Query: 209 QSGAVDRAFDVLAEMNAEVHP---------------------------------VDPDHI 235
           + G+ D+AF +  +M +   P                                 + PD I
Sbjct: 515 ECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVI 574

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           +   L+ AC      DRA E+ K + K  IK +P  Y +  +     G      ++Y  M
Sbjct: 575 SYNTLISACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQM 634

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
             K V+P     + ++D     G+      + +E  ++GI+VG   Y+S+
Sbjct: 635 LDKDVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKGIAVG--DYTSM 682


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 186/425 (43%), Gaps = 7/425 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            +RQG   E   ++++M   G+      Y      +CK  + +  A R  K +       
Sbjct: 358 FMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGR-MGRASRILKQMTKIGYMA 416

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+N+++       + E AF +L  +++ G+  +   Y+ +I    + G+ +    + 
Sbjct: 417 DTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLL 476

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M+  G++PN   Y  LI G  + G  + A      M  +N+ PD   +N+LI      
Sbjct: 477 EQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNV 536

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D A +   EM  +     P+  T G L+   + AG +++A ++   +    +     
Sbjct: 537 GKMDEAIEYYDEMLEK--GFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDF 594

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           +Y   +    ++ + E   S    M +KG++PD      +I     +G ++AA  +L   
Sbjct: 595 IYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVI 654

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           +  G+    + Y SL+     A + +KA+ L + M    ++P +S  NALI   C  D +
Sbjct: 655 EKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDI 714

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                + + +   GL PN +TY+ L+    +  D+   + L ++   +GV P+  ++  +
Sbjct: 715 SHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVL 774

Query: 451 IGMCS 455
              CS
Sbjct: 775 AAGCS 779



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 176/398 (44%), Gaps = 37/398 (9%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T++ L+      +D E A +V+  ++E G   +   Y TLI    ++G ++  F 
Sbjct: 240 SPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFG 299

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EM + G+ P+  TYGA+I+G  K G+  +A      M    + P+ VV++ LI    
Sbjct: 300 YKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFM 359

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK------ 262
           + G  D AF ++ EM+A    V P+ IT   L++     G++ RA  + K + K      
Sbjct: 360 RQGNADEAFKIVKEMSAA--GVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMAD 417

Query: 263 ---YNI----------------------KG--TPEVYT--IAINCCSQTGDWEFACSVYD 293
              YN+                      KG  +P VYT  I IN   Q G+ E A  + +
Sbjct: 418 TMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLE 477

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M   G+ P+    + LI      G    A E L++   + ++  +  Y+SL+   SN  
Sbjct: 478 QMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVG 537

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
              +A+E Y+ M     +P   T   LI        L K  ++L  M + GL PN   Y+
Sbjct: 538 KMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYA 597

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +L    + D++E     L    E G++P+  ++  +I
Sbjct: 598 QILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVI 635



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/435 (22%), Positives = 188/435 (43%), Gaps = 13/435 (2%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +Y+ LIR     GR+     +L+ M + G +  D + +         Q   +EAF     
Sbjct: 385 TYDNLIRGLCKLGRMGRASRILKQMTKIGYM-ADTMTYNLVIEGHLRQHNKEEAFLLLNE 443

Query: 85  --KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             K   +P + T++++++      +SE A  +L  +   GLK +  +Y  LI+   + G 
Sbjct: 444 MRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGS 503

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                E   +M    + P+++ Y +LI G +  G++ +A   Y  M  K  +P+   +  
Sbjct: 504 FSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGG 563

Query: 203 LITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           LI     +G +++A  +L +M N+ ++P D        +++    +  +++     K + 
Sbjct: 564 LIHGYSMAGNLEKAEQLLHQMLNSGLNPND---FIYAQILEGYFKSDNLEKVSSTLKSML 620

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +     +Y I I+  S +G  + A SV   + K G++PD +   +LI     A  +E
Sbjct: 621 EKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADME 680

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +L E   +GI  GI  Y++L+     + +   A  ++  +    L P   T   LI
Sbjct: 681 KAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLI 740

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
              C    +   +++ ++M + G+ P+   YS+L   C    D++  L +  +    G  
Sbjct: 741 DGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYA 800

Query: 442 PNLVMFKCIIGMCSR 456
                   + G C R
Sbjct: 801 IISSFNTLVHGFCKR 815



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 153/339 (45%), Gaps = 2/339 (0%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           +V+ L+++ GL    +    L+    ++  +D +++V   M  AGI P+V+TY  LI+  
Sbjct: 194 EVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPDVYTYSTLIEAY 253

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
            K   +  A      MR      + V +N LI    ++GA++ AF    EM  E + + P
Sbjct: 254 CKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEM--EDYGLVP 311

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           D  T GA++      G+ D+A+ +   +    +     VY+  I+   + G+ + A  + 
Sbjct: 312 DGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIV 371

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            +M+  GV P+++    LI      G++  A  IL++    G     ++Y+ ++      
Sbjct: 372 KEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQ 431

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            N ++A  L   M+   + P V T + +I  LC   +  +   +L  M + GL PN   Y
Sbjct: 432 HNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVY 491

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + L+    R+    +    L +   + + P+L  +  +I
Sbjct: 492 APLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLI 530



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 168/372 (45%), Gaps = 14/372 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFF---NVCKSQKAIKEAFRFFKLVPNPTLS 93
           R+G  S   + L+ M R+ L      Y++      NV K  +AI+      +    P   
Sbjct: 500 REGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDF 559

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+  L+   + + + E A Q+L  +  +GL  +  +Y  ++    KS  ++ +      M
Sbjct: 560 TYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSM 619

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +  G+ P+   YG +I   + +G +  A     ++    + PD +++ +LI+   ++  +
Sbjct: 620 LEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADM 679

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE--- 270
           ++A  +L EM  +   ++P      AL+     +  +  AR ++  I     KG P    
Sbjct: 680 EKAVGLLDEMAKK--GIEPGISCYNALIDGFCKSDDISHARNIFNSII---CKGLPPNCV 734

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            YT  I+   + GD   A  +Y++M  +GV PD    S L     ++G ++ A  I +E 
Sbjct: 735 TYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEM 794

Query: 331 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             +G ++ I S+++L+ G C   K  Q+ ++    M    + P++ T+  ++  L +  +
Sbjct: 795 IARGYAI-ISSFNTLVHGFCKRGK-LQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGK 852

Query: 390 LPKTMEVLSDMK 401
           L +   +  +++
Sbjct: 853 LSEAHTIFVELQ 864



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 133/319 (41%), Gaps = 25/319 (7%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y+     G + +   LL  M   GL   D +Y        KS    K +     ++ 
Sbjct: 565 IHGYSM---AGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLE 621

Query: 89  N---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P    + +++   +SS   + A  VL ++++ GL  D  +Y +LI+   K+  ++ 
Sbjct: 622 KGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEK 681

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              +  EM   GIEP +  Y ALIDG  K+  ++ A   +  +  K + P+ V +  LI 
Sbjct: 682 AVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLID 741

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV--------Y 257
              ++G +  A D+  EM  E   V PD      L   C+N+G + +A  +        Y
Sbjct: 742 GYCKAGDIRDAIDLYNEMLTE--GVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGY 799

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            +I  +N        T+    C + G  +        M  K ++P  + +  ++   G A
Sbjct: 800 AIISSFN--------TLVHGFCKR-GKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEA 850

Query: 318 GKVEAAFEILQEAKNQGIS 336
           GK+  A  I  E + +  S
Sbjct: 851 GKLSEAHTIFVELQQKNAS 869



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 138/305 (45%), Gaps = 4/305 (1%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+D   K G+V        +M+   + P     N L+    ++ A+D  + V   M  E 
Sbjct: 179 LVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFM--EG 236

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD  T   L++A      ++ A++V + + +         Y   I    + G  E 
Sbjct: 237 AGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEE 296

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A     +M   G++PD     A+I+     G+ + A  +L E    G+   ++ YS+L+ 
Sbjct: 297 AFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLID 356

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                 N  +A ++ + M +  ++P   T + LI  LC   ++ +   +L  M  +G   
Sbjct: 357 GFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMA 416

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLN 465
           +T+TY++++    R+ + E   +LL++ ++ G+ PN+  +  II G+C     E+A  L 
Sbjct: 417 DTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLL 476

Query: 466 EHVLS 470
           E +++
Sbjct: 477 EQMIA 481



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 80/183 (43%)

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P V  + ++   +TG       V   M   G+ P     + L+     A  ++  +++  
Sbjct: 173 PVVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRG 232

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             +  GIS  + +YS+L+ A    ++ + A ++ E M+       V T N LI  LC   
Sbjct: 233 FMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAG 292

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            + +      +M+  GL P+  TY  ++    ++   +    LL +    G++PN+V++ 
Sbjct: 293 AIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYS 352

Query: 449 CII 451
            +I
Sbjct: 353 TLI 355



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 105/265 (39%), Gaps = 29/265 (10%)

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V L  L+D     G+V    E++   K+ G++  +   + L+     A       ++   
Sbjct: 174 VVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGF 233

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M+   + P V T + LI A C    L    +V+ +M+  G   N +TY+ L+    R   
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 483
           +E       + ++ G++P+   +  II G+C R                 GRP       
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKR-----------------GRPD------ 330

Query: 484 SLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNL 540
             A  +  E   AG +P V V S ++       NAD   ++V+ +   GV  + +   NL
Sbjct: 331 -QAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNL 389

Query: 541 CSLIDGFGEYDPRAFSLLEEAASFG 565
              +   G    RA  +L++    G
Sbjct: 390 IRGLCKLGRMG-RASRILKQMTKIG 413


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 223/498 (44%), Gaps = 41/498 (8%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +YN LI +    GR S  + +   ME  G L   + Y+     +C     +KA+    + 
Sbjct: 417 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 476

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+ P PT+ T+N L++   +  +   A ++L L++E G + D   Y  L++  +K GK+
Sbjct: 477 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 536

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           ++    F EMV  G+ PN  +Y  LIDG +K G+V  A      M      P+   +NA+
Sbjct: 537 ESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAV 596

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    +      A  +  +M  +   + P+ IT   L+      G+   A +++  + K 
Sbjct: 597 INGLSKENRFSEAEKICDKMAEQ--GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR 654

Query: 264 NIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
             K  P +YT +  I    Q G  + A  +  +M +KG+ PDEV  ++LID     G+++
Sbjct: 655 --KCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRID 712

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNA------------------------KNWQK 357
            AF +L+   + G      +YS L+                               N++ 
Sbjct: 713 HAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEI 772

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
              L   M  I  +PT+ T + L++ LC   +  +  +++ DMK  G CP+   Y  LL+
Sbjct: 773 VSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLI 832

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGR 475
           A  +  +V+  L +    +  G   +L +++ +I  +C + + E+A+ L +++L      
Sbjct: 833 AHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNA 892

Query: 476 PQIENKWTSLALMVYREA 493
            +I   WT L   + +E 
Sbjct: 893 DEI--VWTVLVDGLLKEG 908



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 147/655 (22%), Positives = 266/655 (40%), Gaps = 87/655 (13%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY-- 63
           ++++QF Y   K   Y H+++  +   NRL+R                      D+V+  
Sbjct: 131 ESVIQFFYWISKRPFYKHNMNCFISMLNRLVR----------------------DRVFAP 168

Query: 64  --HARFFNV--CKSQKAIKEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVL 115
             H R   +  C++++ I+    F   +       +L + N L+   A  +  EGA  + 
Sbjct: 169 ADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLY 228

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           + +  +G++     + TLI   +K GKV     +  ++    + P+V TY +LI G  + 
Sbjct: 229 KQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRN 288

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
             +  AFG +  M  +   P+ V ++ LI      G VD A D+L EM  +   ++P   
Sbjct: 289 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK--GIEPTVY 346

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T    + A       + A E+   + K   +   + YT  I+  S+ G  E A  +Y  M
Sbjct: 347 TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM 406

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            K+G++P+ V  +ALI+     G+   A +I    +  G      +Y+ ++       + 
Sbjct: 407 LKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDI 466

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITAL--------------------CDGDQ------ 389
           +KA+ L+E M  +   PTV T N LI                       C+ D+      
Sbjct: 467 EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 526

Query: 390 ---------LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
                    L        +M   GL PN ++Y+ L+    +   V++ L LL + +E G 
Sbjct: 527 VSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGC 586

Query: 441 IPNLVMFKCIIGMCSR--RYEKA---------RTLNEHVLSFNSGRPQI-ENKWTSLALM 488
            PN+  +  +I   S+  R+ +A         + L  +V+++ +    +  N  T  A  
Sbjct: 587 NPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFK 646

Query: 489 VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF- 547
           ++ +      +P +   S ++  L     AD  E L++ +     A       SLIDGF 
Sbjct: 647 IFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFV 706

Query: 548 --GEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSLSFQHATI 600
             G  D  AF LL      G  P  +++   V++   + E    +  ++ QH  +
Sbjct: 707 VLGRID-HAFLLLRRMVDVGCKP--NYRTYSVLLKGLQKECLLLEEKVAVQHEAV 758



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/449 (20%), Positives = 186/449 (41%), Gaps = 35/449 (7%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI     +G ++    LL+ M+  G    +  Y+       K  K    +F F ++
Sbjct: 487 TYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 546

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V    NP   ++  L+   +     + A  +L  ++E G   + + Y  +I   +K  + 
Sbjct: 547 VECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRF 606

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
               ++  +M   G+ PNV TY  LIDG  + G+   AF  +  M  +   P+   +++L
Sbjct: 607 SEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSL 666

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    Q G  D A  +L EM  E   + PD +T  +L+      G++D A  + + +   
Sbjct: 667 IYGLCQEGKADEAEILLKEM--ERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDV 724

Query: 264 NIKGTPEVYTIAINCCSQTG------------------------DWEFACSVYDDMTKKG 299
             K     Y++ +    +                          ++E   ++   M++ G
Sbjct: 725 GCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIG 784

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKA 358
             P     S L+      G+   A +++++ K +G      I YS L+  C N +    A
Sbjct: 785 CEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLE-VDHA 843

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           L+++  +++   +  +S   ALI ALC   Q+ +   +  +M       + I +++L+  
Sbjct: 844 LKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDG 903

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             ++ ++++ + LL   +     PN+  +
Sbjct: 904 LLKEGELDLCMKLLHIMESKNFTPNIQTY 932



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 146/350 (41%), Gaps = 41/350 (11%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            + SYN +I    ++ R SE   + + M  +GLL     Y      +C++ +  + AF+ 
Sbjct: 589 NVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRT-QFAFKI 647

Query: 84  F------KLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F      K +PN  L T++ L+  +C   K  E    +L+ ++  GL  D   +T+LI  
Sbjct: 648 FHDMEKRKCLPN--LYTYSSLIYGLCQEGKADEAEI-LLKEMERKGLAPDEVTFTSLIDG 704

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK-----------AGQVAKAFGAY 185
               G++D  F +   MV+ G +PN  TY  L+ G  K             +   +F  +
Sbjct: 705 FVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPH 764

Query: 186 -------------GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
                          M     +P    ++ L++   + G    A  ++ +M       D 
Sbjct: 765 EKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDR 824

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           + I    L+  C N  +VD A +++  I     +    +Y   I    + G  E A +++
Sbjct: 825 E-IYYSLLIAHCKNL-EVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALF 882

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           D+M +K    DE+  + L+D     G+++   ++L   +++  +  I +Y
Sbjct: 883 DNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTY 932


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/523 (24%), Positives = 217/523 (41%), Gaps = 31/523 (5%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMSVC 102
           L+E M+  G+   D   +      CK     +EA + F+ +     S    T+N L+ V 
Sbjct: 266 LVEKMKSDGIAP-DAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVY 324

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
             S   + A +VL  +   G       Y +LI+  A+ G +D   E+ ++M   G +P+V
Sbjct: 325 GKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDV 384

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY  L+ G  +AG+V  A   +  MR+   KP+   FNA I   G  G       +  E
Sbjct: 385 FTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDE 444

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           +N  V  + PD +T   L+      G       V+K + +       E +   I+  S+ 
Sbjct: 445 IN--VCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G +E A +VY  M   GV PD    + ++      G  E + ++L E ++       ++Y
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTY 562

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
            SL+ A +N K       L E + S  ++P    +  L+      D LP+     S++K 
Sbjct: 563 CSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKE 622

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR------ 456
            G  P+  T + ++    R+  V     +L   KE G  P++  +  ++ M SR      
Sbjct: 623 RGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGK 682

Query: 457 -----RYEKARTLNEHVLSFNSG-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 510
                R   A+ +   ++S+N+       N     A  ++ E   +G +P V   +  +G
Sbjct: 683 SEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIG 742

Query: 511 CLQLPYNADIRERLVENLGVSADALK------RSNLCSLIDGF 547
                Y AD      E +GV    +K      ++   S++DG+
Sbjct: 743 S----YAAD--SMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 197/431 (45%), Gaps = 16/431 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L ++GR+S   ++   ++  G   +D   +    +   +    +EA   FK +      P
Sbjct: 183 LGKEGRVSSAANMFNGLQEDGF-SLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKP 241

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCAKSGKVDAMF 147
           TL T+N++++V    K      ++  LV++    G+  D   Y TLIT C +        
Sbjct: 242 TLITYNVILNVFG--KMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAA 299

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +VF EM  AG   +  TY AL+D   K+ +  +A      M      P  V +N+LI+A 
Sbjct: 300 QVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAY 359

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G +D A ++  +M  +     PD  T   L+     AG+V+ A  +++ +     K 
Sbjct: 360 ARDGMLDEAMELKNQMAEK--GTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKP 417

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               +   I      G +     ++D++   G+ PD V  + L+   G  G       + 
Sbjct: 418 NICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVF 477

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E K  G      ++++L+ A S   ++++A+ +Y  M    + P +ST N ++ AL  G
Sbjct: 478 KEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARG 537

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM-LLSQAKEDGVI-PNLV 445
               ++ +VL++M+     PN +TY  LL A    +  E+GLM  L++    GVI P  V
Sbjct: 538 GMWEQSEKVLAEMEDGRCKPNELTYCSLLHAY--ANGKEIGLMHSLAEEVYSGVIEPRAV 595

Query: 446 MFKCIIGMCSR 456
           + K ++ +CS+
Sbjct: 596 LLKTLVLVCSK 606



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 161/368 (43%), Gaps = 9/368 (2%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           S   +++S+         A  +   +QE G   D   YT+LI+  A SG+      VF +
Sbjct: 174 SVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKK 233

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           M   G +P + TY  +++   K G    K       M+S  + PD   +N LIT C +  
Sbjct: 234 MEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGS 293

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE 270
               A  V  EM A       D +T  AL+      G+  R +E  K++++  + G +P 
Sbjct: 294 LHQEAAQVFEEMKAAGFSY--DKVTYNALLDV---YGKSHRPKEAMKVLNEMVLNGFSPS 348

Query: 271 V--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           +  Y   I+  ++ G  + A  + + M +KG  PD    + L+     AGKVE+A  I +
Sbjct: 349 IVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFE 408

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E +N G    I ++++ +    N   + + +++++ +    L P + T N L+       
Sbjct: 409 EMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNG 468

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              +   V  +MK  G  P   T++ L+ A  R    E  + +  +  + GV P+L  + 
Sbjct: 469 MDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYN 528

Query: 449 CIIGMCSR 456
            ++   +R
Sbjct: 529 TVLAALAR 536



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 6/330 (1%)

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG-IMRS 190
           +LI     SG++D++     E      E       A + G     +   A  A+   M+ 
Sbjct: 105 SLIEPNFDSGQLDSVLSELFEPFKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQ 164

Query: 191 KNVKP--DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           K+ +   D  V   +I+  G+ G V  A ++   +  +   +D    T  +L+ A AN+G
Sbjct: 165 KDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYT--SLISAFANSG 222

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFL 307
           +   A  V+K + +   K T   Y + +N   + G  W    S+ + M   G+ PD    
Sbjct: 223 RYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTY 282

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + LI         + A ++ +E K  G S   ++Y++L+     +   ++A+++   M  
Sbjct: 283 NTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVL 342

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
               P++ T N+LI+A      L + ME+ + M   G  P+  TY+ LL   ER   VE 
Sbjct: 343 NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
            + +  + +  G  PN+  F   I M   R
Sbjct: 403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNR 432



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 139/317 (43%), Gaps = 8/317 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TFN L+S  +     E A  V R + +AG+  D   Y T++   A+ G  +   +V
Sbjct: 487 PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKV 546

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM +   +PN  TY +L+   A   ++         + S  ++P  V+   L+  C +
Sbjct: 547 LAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSK 606

Query: 210 SGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
              +   +RAF  L E         PD  T+ +++        V +A  V   + +    
Sbjct: 607 CDLLPEAERAFSELKERG-----FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFT 661

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            +   Y   +   S++ D+  +  +  ++  KG+ PD +  + +I       ++  A  I
Sbjct: 662 PSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRI 721

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             E +N GI   +I+Y++ +G+ +    +++A+ +  +M     +P  +T N+++   C 
Sbjct: 722 FSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCK 781

Query: 387 GDQLPKTMEVLSDMKSL 403
            ++  +    + D+++L
Sbjct: 782 LNRKDEAKLFVEDLRNL 798



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           DW      Y  M    V+      + +I   G  G+V +A  +    +  G S+ + SY+
Sbjct: 159 DWFMKQKDYQSMLDNSVV------AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYT 212

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD-GDQLPKTMEVLSDMKS 402
           SL+ A +N+  +++A+ +++ M+    KPT+ T N ++      G    K   ++  MKS
Sbjct: 213 SLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS 272

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYE 459
            G+ P+  TY+ L+  C+R    +    +  + K  G   + V +  ++   G   R  E
Sbjct: 273 DGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKE 332

Query: 460 KARTLNEHVLSFNSGRPQI 478
             + LNE VL  N   P I
Sbjct: 333 AMKVLNEMVL--NGFSPSI 349



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 36/218 (16%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLIRQGRI---------SECIDLLEDMER-------KG- 55
           Y NGK     H ++E++  Y+ +I    +         S+C DLL + ER       +G 
Sbjct: 569 YANGKEIGLMHSLAEEV--YSGVIEPRAVLLKTLVLVCSKC-DLLPEAERAFSELKERGF 625

Query: 56  ------LLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
                 L  M  +Y  R   V K+   +   KE  R F     P+++T+N LM + + S 
Sbjct: 626 SPDITTLNSMVSIYGRRQM-VAKANGVLDYMKE--RGF----TPSMATYNSLMYMHSRSA 678

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           D   + ++LR +   G+K D   Y T+I    ++ ++     +F EM N+GI P+V TY 
Sbjct: 679 DFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYN 738

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
             I   A      +A G    M     +P++  +N+++
Sbjct: 739 TFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIV 776


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 157/325 (48%), Gaps = 2/325 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ML++      D   AF +   + ++GL+ D  +Y  L+    K G +D    +F  M
Sbjct: 463 TYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERM 522

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               ++P+  T+  +I+G A AG + +AF    +MR     P  + +NALI    +   V
Sbjct: 523 QKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQV 582

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           ++A  VL +M+  +  + P+  T   +M+  A +G + +A E +  I +  +K    +Y 
Sbjct: 583 EKAVSVLDKMS--IAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYE 640

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             +  C ++G  + A +V  +M+ + +  +    + LID     G V  A ++L++ K  
Sbjct: 641 TLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKED 700

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI   I +++S + AC  A + Q+A  + + M  + LKP V T   LI          + 
Sbjct: 701 GIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRA 760

Query: 394 MEVLSDMKSLGLCPNTITYSILLVA 418
           ++   +MKS GL P+   Y  L+ +
Sbjct: 761 LKCFEEMKSAGLKPDEAAYHCLVTS 785



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 161/365 (44%), Gaps = 2/365 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +  ++ +M      +D +    V   ++E G K     Y  LI    K GKV     +  
Sbjct: 391 IDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISK 450

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM + GI+ N  TY  LI+G       A AF  +  M    ++PDR ++N L+ A  + G
Sbjct: 451 EMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMG 510

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA  +   M  E   + P + T   +++  A AG + RA +   ++ +     T   
Sbjct: 511 NMDRAIRIFERMQKER--MQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMT 568

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+   +    E A SV D M+  G+ P+E   + ++     +G +  AFE   + K
Sbjct: 569 YNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 628

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+ + +  Y +L+ AC  +   Q AL +   M   K+       N LI        + 
Sbjct: 629 ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVW 688

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  ++L  MK  G+ PN  T++  + AC +  D++    ++ +  + G+ PN+  F  +I
Sbjct: 689 EAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLI 748

Query: 452 GMCSR 456
              +R
Sbjct: 749 KGWAR 753



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 177/404 (43%), Gaps = 33/404 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +P P+   F +++   A   D   A      ++  G++ +  ++T+L+   A +G +
Sbjct: 243 FERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDM 302

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                   EM + GIE  V TY  LI G  K      A   +   ++K    + ++++ +
Sbjct: 303 RGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIYSNI 362

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  QSG +DRA +++ EM  +    P+D                              
Sbjct: 363 IHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGF 422

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  I+ G L+      G+V +A  + K +  + IK   + Y++ IN      D+  A S
Sbjct: 423 KPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFS 482

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +++DM K G+ PD    + L++     G ++ A  I +  + + +     ++  ++   +
Sbjct: 483 IFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFA 542

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A + ++A +  + M+     PTV T NALI  L    Q+ K + VL  M   G+ PN  
Sbjct: 543 VAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEH 602

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+I++       D+       ++ KE G+  ++ +++ ++  C
Sbjct: 603 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 646



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 161/370 (43%), Gaps = 3/370 (0%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N++ + C S  + + A +++R ++E G+ A   +Y +++              VF  +  
Sbjct: 361 NIIHAHCQSG-NMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKE 419

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G +P + +YG LI+   K G+V KA      M S  +K +   ++ LI           
Sbjct: 420 CGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFAN 479

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           AF +  +M      + PD      L++A    G +DRA  +++ + K  ++ +   +   
Sbjct: 480 AFSIFEDMIKS--GLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPI 537

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I   +  GD + A    D M + G  P  +  +ALI       +VE A  +L +    GI
Sbjct: 538 IEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGI 597

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           +    +Y+ +M   + + +  KA E +  +K   LK  V     L+ A C   ++   + 
Sbjct: 598 APNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 657

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           V  +M    +  NT  Y+IL+    R+ DV     LL Q KEDG+ PN+  F   I  C 
Sbjct: 658 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACC 717

Query: 456 RRYEKARTLN 465
           +  +  R  N
Sbjct: 718 KAGDMQRAEN 727



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 152/355 (42%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
           N  I     +    + EDM + GL     +Y+      CK     +AI+   R  K    
Sbjct: 469 NGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQ 528

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+  TF  ++   A + D + AF  L L++ +G       Y  LI    +  +V+    V
Sbjct: 529 PSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSV 588

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M  AGI PN HTY  ++ G A +G + KAF  +  ++   +K D  ++  L+ AC +
Sbjct: 589 LDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCK 648

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           SG +  A  V  EM+ +  P +        L+   A  G V  A ++ K + +  I    
Sbjct: 649 SGRMQSALAVTREMSFQKIPRNT--FIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNI 706

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             +T  IN C + GD + A +V  +M   G+ P+    + LI         + A +  +E
Sbjct: 707 HTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEE 766

Query: 330 AKNQGIS----------VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
            K+ G+             ++S +++M   +    +    E++E+  ++ L+  V
Sbjct: 767 MKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIFSVCREMFENDLTVDLRTAV 821


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 197/434 (45%), Gaps = 47/434 (10%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    ++Y  +IR    +GR+ + + LL+DM ++G               C+        
Sbjct: 137 VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRG---------------CQ-------- 173

Query: 81  FRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                    P++ T+ +L+ +VC SS   E A  VL  ++  G   +   Y  +I    +
Sbjct: 174 ---------PSVVTYTVLLEAVCKSSGFGE-AMNVLDEMRAKGCTPNIVTYNVIINGMCR 223

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G+VD   E+ + + + G +P++ +Y  ++ G   A +       +  M  K   P+ V 
Sbjct: 224 EGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVT 283

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           F+ L+    + G V+RA  VL +M+   H   P+      ++ A    G+VD A +    
Sbjct: 284 FDMLVRFFCRGGMVERAIQVLQQMSQ--HGCTPNTTLCNIVINAICKQGRVDDAYDFLNN 341

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +  Y        YT  +    + G WE A  +  +M +K   P+EV  +  I      G 
Sbjct: 342 MGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGL 401

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +E A ++++     G SVGI++Y++L+ G C   +    ALEL+ ++     +P   T  
Sbjct: 402 IEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGR-VDSALELFNNLPC---EPNTITYT 457

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437
            L+T LC  ++L    E+L+ M     CP N +T+++L+    +K  VE  + L++Q  E
Sbjct: 458 TLLTGLCHAERLDAAAELLAGMIQKD-CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMME 516

Query: 438 DGVIPNLVMFKCII 451
            G  PNL+ F  ++
Sbjct: 517 HGCTPNLITFNTLL 530



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/442 (22%), Positives = 189/442 (42%), Gaps = 33/442 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+GR+ +  ++L  +   G       Y      +C +++       F ++V     
Sbjct: 219 NGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV 278

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TF+ML+         E A QVL+ + + G   +  L   +I    K G+VD  ++ 
Sbjct: 279 PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF 338

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M   G  P+  +Y  ++ G  +AG+   A      M  KN  P+ V FN  I    Q
Sbjct: 339 LNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQ 398

Query: 210 SGAVDRAFDVLAEM------------NAEVH------------------PVDPDHITIGA 239
            G +++A  ++  M            NA VH                  P +P+ IT   
Sbjct: 399 KGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTT 458

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+    +A ++D A E+   + + +       + + ++   Q G  E A  + + M + G
Sbjct: 459 LLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG 518

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
             P+ +  + L+D        E A E+L    ++G+S+  I+YSS++   S     ++A+
Sbjct: 519 CTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAI 578

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           ++   ++ + ++P V   N ++ ALC   +  + ++  + M S G  PN  TY IL+   
Sbjct: 579 QMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGL 638

Query: 420 ERKDDVEVGLMLLSQAKEDGVI 441
             +  ++    +LS+    GV+
Sbjct: 639 AHEGLLKEARYVLSELYAKGVL 660



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 154/368 (41%), Gaps = 8/368 (2%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P+  L T  ++ ++C   + S+ A +VLR  + +G   D   Y TL+    + G++DA  
Sbjct: 72  PDVYLCT-KLIRNLCRRGRTSDAA-RVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAAR 129

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +   M    + P+ +TY  +I G    G+V  A      M  +  +P  V +  L+ A 
Sbjct: 130 RLIASM---PVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAV 186

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +S     A +VL EM A+     P+ +T   ++      G+VD A+E+   +  Y  + 
Sbjct: 187 CKSSGFGEAMNVLDEMRAK--GCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQP 244

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  +        W+    ++ +M  K  +P+EV    L+ F    G VE A ++L
Sbjct: 245 DIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVL 304

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           Q+    G +      + ++ A         A +   +M      P   +   ++  LC  
Sbjct: 305 QQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRA 364

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +     E+L +M      PN +T++  +    +K  +E  + L+    E G    +V +
Sbjct: 365 GRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTY 424

Query: 448 KCII-GMC 454
             ++ G C
Sbjct: 425 NALVHGFC 432



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 159/357 (44%), Gaps = 10/357 (2%)

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G  P+V+    LI    + G+ + A        +     D   +N L+    + G +D A
Sbjct: 69  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAA 128

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             ++A M     PV PD  T   +++   + G+V  A  +   + +   + +   YT+ +
Sbjct: 129 RRLIASM-----PVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLL 183

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
               ++  +  A +V D+M  KG  P+ V  + +I+     G+V+ A EIL    + G  
Sbjct: 184 EAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQ 243

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             I+SY++++     A+ W     L+  M   K  P   T + L+   C G  + + ++V
Sbjct: 244 PDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQV 303

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC- 454
           L  M   G  PNT   +I++ A  ++  V+     L+     G  P+ + +  ++ G+C 
Sbjct: 304 LQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCR 363

Query: 455 SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 511
           + R+E A+ L   ++  N   P  E  + +   ++ ++ ++   I  +E++ +  GC
Sbjct: 364 AGRWEHAKELLPEMVRKNC--PPNEVTFNTFICILCQKGLIEQAIKLIELMPE-YGC 417


>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 564

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 163/365 (44%), Gaps = 2/365 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +  ++ +M       D +    V    +E GL      Y  LI   AK GKV    EV  
Sbjct: 53  IDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSK 112

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM +AGI+ N+ TY  LI+G  K    A AF  +  +    +KPD V++N +ITA    G
Sbjct: 113 EMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMG 172

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA   + EM  + H   P   T   ++   A  G++ +A +V+ M+       T   
Sbjct: 173 KMDRAVCTVKEMQKQRHK--PTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHT 230

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I    +    E A  + D+MT  GV P+E   + ++      G    AF    + +
Sbjct: 231 YNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLR 290

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           ++G+ + + +Y +L+ AC  +   Q AL + + M +  +       N LI        + 
Sbjct: 291 DEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVW 350

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  MK  G+ P+  TY+  + AC +  D++     + + K  GV PN+  +  +I
Sbjct: 351 EAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLI 410

Query: 452 GMCSR 456
              +R
Sbjct: 411 NGWAR 415



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 151/327 (46%), Gaps = 2/327 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ML++     KD   AF +   + + G+K D  LY  +IT     GK+D       
Sbjct: 123 MKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVK 182

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM     +P   T+  +I G A+ G++ KA   + +MR     P    +NALI    +  
Sbjct: 183 EMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKR 242

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +++A  +L EM   +  V P+  T   +M   A+ G   +A   +  +    ++     
Sbjct: 243 KMEKAEQILDEMT--LAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYT 300

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++Q+ K
Sbjct: 301 YEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMK 360

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I +Y+S + ACS A + Q+A +  E MKS+ +KP V T   LI          
Sbjct: 361 REGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPE 420

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVA 418
           K +    +MK  GL P+   Y  L+ +
Sbjct: 421 KALSCFEEMKLSGLKPDRAVYHCLMTS 447



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 142/333 (42%), Gaps = 5/333 (1%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKS 73
           +HA   H++       N  ++    +    + ED+ + G+     +Y+     F  + K 
Sbjct: 115 EHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKM 174

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A+       K    PT  TF  ++   A   + + A  V  +++ +G       Y  L
Sbjct: 175 DRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNAL 234

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    +  K++   ++  EM  AG+ PN HTY  ++ G A  G   KAF  +  +R + +
Sbjct: 235 ILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGL 294

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           + D   + AL+ AC +SG +  A  V  EM+A+  P +        L+   A  G V  A
Sbjct: 295 QLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNT--FIYNILIDGWARRGDVWEA 352

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            ++ + + +  ++     YT  IN CS+ GD + A    ++M   GV P+    + LI+ 
Sbjct: 353 ADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLING 412

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
              A   E A    +E K  G+      Y  LM
Sbjct: 413 WARASLPEKALSCFEEMKLSGLKPDRAVYHCLM 445



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 149/367 (40%), Gaps = 33/367 (8%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  +I    +   +D    +  EM   GI+  +  Y  ++DG    G   K    +   
Sbjct: 20  IYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERF 79

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM-------NAEVHP------------ 229
           +   + P  + +  LI    + G V +A +V  EM       N + +             
Sbjct: 80  KECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDW 139

Query: 230 --------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
                         + PD +    ++ A    G++DRA    K + K   K T   +   
Sbjct: 140 ANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPI 199

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+  ++ G+ + A  V+D M   G IP     +ALI       K+E A +IL E    G+
Sbjct: 200 IHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGV 259

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           S    +Y+++M   ++  +  KA   +  ++   L+  V T  AL+ A C   ++   + 
Sbjct: 260 SPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALA 319

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           V  +M +  +  NT  Y+IL+    R+ DV     L+ Q K +GV P++  +   I  CS
Sbjct: 320 VTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACS 379

Query: 456 RRYEKAR 462
           +  +  R
Sbjct: 380 KAGDMQR 386



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 157/346 (45%), Gaps = 31/346 (8%)

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           ++P  IT G L+   A  G+V +A EV K +    IK   + Y++ IN   +  DW  A 
Sbjct: 84  LNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAF 143

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
           ++++D+ K G+ PD V  + +I      GK++ A   ++E + Q       ++  ++   
Sbjct: 144 AIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGF 203

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
           +     +KAL++++ M+     PTV T NALI  L +  ++ K  ++L +M   G+ PN 
Sbjct: 204 ARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNE 263

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 469
            TY+ ++       D        ++ +++G+  ++  ++ ++  C +             
Sbjct: 264 HTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCK------------- 310

Query: 470 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL--GCLQ---LPYNADIRERL 524
              SGR Q        AL V +E + A  IP    +  +L  G  +   +   AD+ +++
Sbjct: 311 ---SGRMQS-------ALAVTKE-MSAQNIPRNTFIYNILIDGWARRGDVWEAADLMQQM 359

Query: 525 VENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
            +  GV  D    ++  +     G+   RA   +EE  S G+ P V
Sbjct: 360 -KREGVQPDIHTYTSFINACSKAGDMQ-RATKTIEEMKSVGVKPNV 403



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 36/171 (21%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+R+G+                     
Sbjct: 326 AQNIPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGV--------------------- 364

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   ++ C+ + D + A + +  ++  G+K + K YTTLI   
Sbjct: 365 -----------QPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGW 413

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           A++   +     F EM  +G++P+   Y  L+        VA      GI+
Sbjct: 414 ARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTSLLSRATVAHGCIYPGIL 464


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 167/367 (45%), Gaps = 3/367 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L+S        + A ++L  +++ G++   K+YT LI    K   V     +
Sbjct: 224 PDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGL 283

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM +    P+V TY  LI G  KAG+  +A+  +  MR +  +PD VV N +I   G+
Sbjct: 284 FEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGK 343

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC-ANAGQVDRAREVYKMIHKYNIKGT 268
           +G +D A  +  EM        P  +T   ++KA   +  ++      ++ +    I  +
Sbjct: 344 AGRLDDAVKLFEEMG--TLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPS 401

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P  Y+I I+   +T   E A  + ++M +KG  P      +LID  G A + + A E+ Q
Sbjct: 402 PFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHELFQ 461

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E K    S     Y+ ++     A     A+ L++ M  +   P V   NAL++ L    
Sbjct: 462 ELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAG 521

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L + +  +  M+  G  P+  +Y+I+L    +       + +LS  K+  + P+ V + 
Sbjct: 522 MLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYN 581

Query: 449 CIIGMCS 455
            ++G  S
Sbjct: 582 TVLGAMS 588



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/401 (21%), Positives = 177/401 (44%), Gaps = 10/401 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
           +Y+ LI    + GR    I LL +M+  G+    K+Y    A FF +     A+      
Sbjct: 228 TYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEM 287

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P + T+  L+     +   + A+     ++  G + D  +   +I    K+G++
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRL 347

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-GQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           D   ++F EM      P+V TY  +I    ++  ++++    +  M+   + P    ++ 
Sbjct: 348 DDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSI 407

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    ++   ++A  +L EM+ +  P  P      +L+ A   A + D A E+++ + +
Sbjct: 408 LIDGFCKTNRTEKAMMLLEEMDEKGFP--PCPAAYCSLIDALGKAKRYDIAHELFQELKE 465

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                +  VY + I    + G  + A +++D+M K G  P+    +AL+     AG ++ 
Sbjct: 466 NCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDE 525

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A   ++  +  G    I SY+ ++   +      +A+E+  +MK   +KP   + N ++ 
Sbjct: 526 ALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLG 585

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
           A+       +  +++ +M  LG   + ITYS +L A  + D
Sbjct: 586 AMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKVD 626



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 324 FEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           ++++QE  +N    V  +  S ++    NAK   KA+ ++  +K  K +PT    N++I 
Sbjct: 139 WKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMII 198

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            L    Q  K  E+ ++M + G C P+T+TYS L+ A  +    +  + LL++ K++G+ 
Sbjct: 199 MLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQ 258

Query: 442 PNLVMFKCIIGM 453
           P   ++  +I +
Sbjct: 259 PTAKIYTMLIAL 270



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 149/371 (40%), Gaps = 29/371 (7%)

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
           AE   EV  +  DH  +  +MK   + G   + +       K N +     Y   I C  
Sbjct: 73  AEKALEVLMLKVDHWLVREVMKT--DVGVNVKMQFFRWAAKKRNYEHDTSTYMALIRCLE 130

Query: 281 QTGDWEFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
               +     +  +M +  V +   + LS +I   G+A  +  A  I  + K +      
Sbjct: 131 VVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTA 190

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLS 398
            +Y+S++    +   ++K  ELY  M +     P   T +ALI+A C   +    + +L+
Sbjct: 191 QAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLN 250

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-- 456
           +MK  G+ P    Y++L+    + ++V   L L  + +     P++  +  +I    +  
Sbjct: 251 EMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAG 310

Query: 457 RYEKARTLNEHVLSFNSGRPQ---IENKWTSL--------ALMVYREAIVAGTIPTVEVV 505
           R+++A     H +     RP    I N    L        A+ ++ E      IP+V   
Sbjct: 311 RFDEAYNFF-HEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTY 369

Query: 506 SKVLGCL-----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLL 558
           + ++  L     ++   +   ER+ +  G+S      S    LIDGF + +   +A  LL
Sbjct: 370 NTIIKALFESKSRISEISSWFERM-KGSGISPSPFTYS---ILIDGFCKTNRTEKAMMLL 425

Query: 559 EEAASFGIVPC 569
           EE    G  PC
Sbjct: 426 EEMDEKGFPPC 436


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 187/372 (50%), Gaps = 23/372 (6%)

Query: 93  STFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +TFN ML  +C++ K +  A ++LR +     + +   Y T+I      G+V A  ++  
Sbjct: 484 TTFNIMLRHLCSAGKPAR-ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMR 538

Query: 152 EMV-NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQ 209
           EM    GI PN +TYG +I G  K G+V +A   +  M +K  VKP+ V++NALI     
Sbjct: 539 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 598

Query: 210 SGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            G +D A    D + E    +        T   L+ A    G   R  E Y+++ +   K
Sbjct: 599 QGKLDTALLYRDRMVERGVAMTVA-----TYNLLVHALFMDG---RGTEAYELVEEMGGK 650

Query: 267 G-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G  P+V+T  I IN   + G+ + A  ++++M+++GV    V  +ALI      G+V+  
Sbjct: 651 GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQET 710

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            ++  EA  +GI   ++ Y++L+ + S + N  +A E+   M+  ++ P   T N L+  
Sbjct: 711 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRG 770

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++ +  +++ +M   G+ P+ +TY+ L+     K DV+  L + ++    G  P 
Sbjct: 771 LCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPT 830

Query: 444 LVMFKCII-GMC 454
           L+ +  +I G+C
Sbjct: 831 LLTYNALIQGLC 842



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 197/420 (46%), Gaps = 11/420 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           L  DM R  L      ++    ++C + K  + A    + +P P   T+N +++   S  
Sbjct: 470 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPAR-ALELLRQMPRPNAVTYNTVIAGFCSRG 528

Query: 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHT 164
             + A  ++R ++E  G+  +   Y T+I+   K G+VD   +VF EM+  G ++P    
Sbjct: 529 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 588

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y ALI G    G++  A      M  + V      +N L+ A    G    A++++ EM 
Sbjct: 589 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 648

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
            +   + PD  T   L+      G V +A E+++ + +  ++ T   YT  I   S+ G 
Sbjct: 649 GKG--LAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQ 706

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            +    ++D+  ++G+ PD V  +ALI+    +G ++ AFEI+ E + + I+   ++Y++
Sbjct: 707 VQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNT 766

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           LM          +A +L + M    ++P + T N LI+       +   + + ++M + G
Sbjct: 767 LMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKG 826

Query: 405 LCPNTITYSILLVA-CE--RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 461
             P  +TY+ L+   C+  + DD E    ++ +  E+G+ P+   +  +I   +   E+A
Sbjct: 827 FNPTLLTYNALIQGLCKNGQGDDAE---NMVKEMVENGITPDDSTYISLIEGLTTEDERA 883



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 127/298 (42%), Gaps = 12/298 (4%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+   A     A +   Y  M+S ++       + L++A   + A    F + A+M    
Sbjct: 423 LLTASAAVRPHATSLRLYSRMKSLSLPISTASLHPLLSALPSAPA----FALFADMFRLR 478

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
            P+     T   +++   +AG+  RA E+ + + + N       Y   I      G  + 
Sbjct: 479 LPLC--TTTFNIMLRHLCSAGKPARALELLRQMPRPNAV----TYNTVIAGFCSRGRVQA 532

Query: 288 ACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSL 345
           A  +  +M ++G I P++     +I      G+V+ A ++  E   +G +    + Y++L
Sbjct: 533 ALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNAL 592

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +G   +      AL   + M    +  TV+T N L+ AL    +  +  E++ +M   GL
Sbjct: 593 IGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGL 652

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 463
            P+  TY+IL+    ++ +V+  L +       GV   +V +  +I   S++ +   T
Sbjct: 653 APDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQET 710



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 37/253 (14%)

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           +  +    K+  + +   S   L+ A  +A     A  L+  M  ++L    +T N ++ 
Sbjct: 436 SLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLR 491

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVI 441
            LC   +  + +E+L  M      PN +TY+ ++     +  V+  L ++ + +E  G+ 
Sbjct: 492 HLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIA 547

Query: 442 PNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 499
           PN   +  +I G C   R ++A  + + +L+    +P+           V   A++ G  
Sbjct: 548 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE----------AVMYNALIGGYC 597

Query: 500 PTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCS--LIDGFGEYDPRAFSL 557
              ++ + +L           R+R+VE  GV+      + L     +DG G     A+ L
Sbjct: 598 DQGKLDTALL----------YRDRMVER-GVAMTVATYNLLVHALFMDGRGT---EAYEL 643

Query: 558 LEEAASFGIVPCV 570
           +EE    G+ P V
Sbjct: 644 VEEMGGKGLAPDV 656


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 196/448 (43%), Gaps = 41/448 (9%)

Query: 42  SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNM 97
           S+   L+  M+  G+   D  Y+    + C+     +EA + F+ +     +P   TFN 
Sbjct: 270 SKISGLVHGMKSSGVAPDDYTYNT-LISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNT 328

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L+ V   S+  + A +VL+ ++ +G       Y +LI+  A+ G +    E+  +MV  G
Sbjct: 329 LLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKG 388

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I+P+V TY  L+ G  KAG    A   +G MR+   KP+   FNALI   G  G      
Sbjct: 389 IKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMM 448

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            V  E+  E+    PD +T   L+      G       V+K + +       + +   I+
Sbjct: 449 KVFEEI--EICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 506

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
             S+ G ++ A +VY  M + GV PD    +A++      G  E + ++  E K+     
Sbjct: 507 AYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKP 566

Query: 338 GIISYSSLMGACSNAKNWQK----ALELY---------------------------EH-M 365
             ++Y SL+ A +N+K  ++    A E+Y                           EH  
Sbjct: 567 NELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAF 626

Query: 366 KSIKLK--PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
           + +K K  P +ST+NA+I        + K  E+L+ M   G  P+  TY+ L+    R +
Sbjct: 627 EELKKKGSPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSE 686

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + E    +L +    G+ P+L+ +  +I
Sbjct: 687 NFERSEEVLKEILAKGLKPDLISYNTVI 714



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 195/443 (44%), Gaps = 15/443 (3%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN LI    R G + E ++L + M  KG+   D   +    +  +     + A 
Sbjct: 355 SPSIVTYNSLISAYARDGLLREAMELKDQMVEKGI-KPDVFTYTTLLSGFEKAGMDEPAM 413

Query: 82  RFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           R F  +      P + TFN L+ +  +        +V   ++      D   + TL+   
Sbjct: 414 RIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVF 473

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            ++G    +  VF EM  AG  P   T+  LI   ++ G   +A   Y  M    V PD 
Sbjct: 474 GQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDL 533

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             +NA++ A  + G  +++  V AEM        P+ +T  +L+ A AN+ +++R   + 
Sbjct: 534 SSYNAVLAALARGGLWEQSEKVFAEMKD--GRCKPNELTYCSLLHAYANSKEIERMHTLA 591

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + I+    +  P +    +   S+          ++++ KKG  PD   L+A+I   G  
Sbjct: 592 EEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKGS-PDLSTLNAMIAIYGRR 650

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
             V  A EIL      G S  + +Y+SLM   S ++N++++ E+ + + +  LKP + + 
Sbjct: 651 QMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISY 710

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N +I A C   ++     + S MK+ GL P+ ITY+  + +       E  + ++    +
Sbjct: 711 NTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIK 770

Query: 438 DGVIPNLVMFKCII-GMC--SRR 457
            G   N   +  I+ G C  SRR
Sbjct: 771 HGCKRNQNTYNSIVDGYCKHSRR 793



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 110/478 (23%), Positives = 203/478 (42%), Gaps = 47/478 (9%)

Query: 18  HANYAHDVSEQLHSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H   +  V+   ++YN LI   R+G +  E   + E+M+  G    DKV      +V   
Sbjct: 277 HGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGF-SPDKVTFNTLLDVYGK 335

Query: 74  QKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            +  KEA    K +     +P++ T+N L+S  A       A ++   + E G+K D   
Sbjct: 336 SRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFT 395

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           YTTL++   K+G  +    +F EM  AG +PN+ T+ ALI      G+ A+    +  + 
Sbjct: 396 YTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIE 455

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
             N  PD V +N L+   GQ+G       V  EM        P+  T   L+ A +  G 
Sbjct: 456 ICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA--GFVPERDTFNTLISAYSRCGS 513

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
             +A  VYK + +  +      Y   +   ++ G WE +  V+ +M      P+E+   +
Sbjct: 514 FQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCS 573

Query: 310 LIDFAGHAGKVEA----AFEI-------------------------------LQEAKNQG 334
           L+    ++ ++E     A EI                                +E K +G
Sbjct: 574 LLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKG 633

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
            S  + + ++++      +   KA E+   M      P+++T N+L+      +   ++ 
Sbjct: 634 -SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSE 692

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           EVL ++ + GL P+ I+Y+ ++ A  R   ++    + S  K  G++P+++ +   + 
Sbjct: 693 EVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVA 750



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 149/348 (42%), Gaps = 3/348 (0%)

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
            A  +L  +++ G   D   YT+LIT  A +G+      VF +M   G +P + TY  ++
Sbjct: 200 AASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVIL 259

Query: 170 DGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           +   K G   +K  G    M+S  V PD   +N LI+ C +    + A  V  EM  ++ 
Sbjct: 260 NVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEM--KLS 317

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
              PD +T   L+     + +   A EV K +       +   Y   I+  ++ G    A
Sbjct: 318 GFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREA 377

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             + D M +KG+ PD    + L+     AG  E A  I  E +  G    I ++++L+  
Sbjct: 378 MELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKM 437

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
             N   + + ++++E ++     P + T N L+          +   V  +MK  G  P 
Sbjct: 438 HGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 497

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             T++ L+ A  R    +  + +  +  E GV P+L  +  ++   +R
Sbjct: 498 RDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALAR 545



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 133/321 (41%), Gaps = 46/321 (14%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           +M MSV +  ++ E    VL          +C +   +IT   K GKV A   + + +  
Sbjct: 161 DMAMSVFSWVREREDFESVL----------NCSVVAVIITMLGKEGKVSAASSILNNLRK 210

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G + +V+ Y +LI   A  G+   A   +  M  +  KP  + +N ++   G+ G    
Sbjct: 211 DGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYNVILNVYGKMGMPWS 270

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
               L     +   V PD  T                                   Y   
Sbjct: 271 KISGLVH-GMKSSGVAPDDYT-----------------------------------YNTL 294

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+CC +   +E A  V+++M   G  PD+V  + L+D  G + + + A E+L+E +  G 
Sbjct: 295 ISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGF 354

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           S  I++Y+SL+ A +     ++A+EL + M    +KP V T   L++           M 
Sbjct: 355 SPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMR 414

Query: 396 VLSDMKSLGLCPNTITYSILL 416
           +  +M++ G  PN  T++ L+
Sbjct: 415 IFGEMRAAGCKPNICTFNALI 435



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 116/260 (44%), Gaps = 3/260 (1%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           V   +IT  G+ G V  A  +L  +  +    D D     +L+ A A+ G+   A  V+K
Sbjct: 184 VVAVIITMLGKEGKVSAASSILNNLRKD--GFDLDVYAYTSLITAYASNGRYRDAVLVFK 241

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            + +   K T   Y + +N   + G  W     +   M   GV PD+   + LI      
Sbjct: 242 KMEEEGCKPTLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRG 301

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
              E A ++ +E K  G S   +++++L+     ++  ++A+E+ + M+     P++ T 
Sbjct: 302 SLYEEAAQVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTY 361

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N+LI+A      L + ME+   M   G+ P+  TY+ LL   E+    E  + +  + + 
Sbjct: 362 NSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRA 421

Query: 438 DGVIPNLVMFKCIIGMCSRR 457
            G  PN+  F  +I M   R
Sbjct: 422 AGCKPNICTFNALIKMHGNR 441



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 7/149 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P+L+T+N LM + + S++ E + +VL+ +   GLK D   Y T+I    ++G++     
Sbjct: 669 SPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASR 728

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-C 207
           +F  M   G+ P+V TY   +   A       A G    M     K ++  +N+++   C
Sbjct: 729 IFSYMKTYGLVPDVITYNTFVASYAADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYC 788

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
             S   D    V     + ++ +DP H+T
Sbjct: 789 KHSRRADAIMFV-----SSLNQLDP-HVT 811


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 166/355 (46%), Gaps = 2/355 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P    +N L+         + A QVL  + + G+  D   Y+ L+    ++G+ ++   
Sbjct: 289 KPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARI 348

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G++P+ + +  ++ G    G+  KAF     M +  V+PDR  +N +I   G
Sbjct: 349 LLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFG 408

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +  A D    M  E   ++PD +T   L+ A    G+ DRA E++  + + N    
Sbjct: 409 KYNCLGHAMDAFDRMREEG--IEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLG 466

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I IN   +   WE   ++  +M ++G++P+ +  + L+D  G +G+ + A + ++
Sbjct: 467 TTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIE 526

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             K  G+      Y +L+ A +       AL + + M++  L+ +   +N+LI A  +  
Sbjct: 527 AMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDR 586

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           ++ +   VL  MK  GL P+ ITY+ L+ A  R +  E   ++  +    G  P+
Sbjct: 587 RIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPD 641



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 178/372 (47%), Gaps = 6/372 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGA---FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P L++++ L++   +++D   A    ++L  ++E+ L+ D  L++ LI+  A++   DA 
Sbjct: 181 PDLASYSHLLASLLNTRDPPDAALLDRLLGDLRESRLEPDAPLFSDLISAFARARLPDAA 240

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALIT 205
            E+       G+ P  +   ALI     A +VA+A   +     +  +KP    +NAL+ 
Sbjct: 241 LELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLK 300

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G++  A  VL EM+     V PD  T   L+ A   AG+ + AR + K +    +
Sbjct: 301 GYVKIGSLKNAEQVLDEMSQ--CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGV 358

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K +  V++  +      G+W+ A +V  +M   GV PD  F + +ID  G    +  A +
Sbjct: 359 KPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMD 418

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
                + +GI   ++++++L+ A        +A+EL++ M+        +T N +I  L 
Sbjct: 419 AFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLG 478

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           +  +      +L++MK  GL PN ITY+ L+    R    +  +  +   K DG+ P+  
Sbjct: 479 EEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPT 538

Query: 446 MFKCIIGMCSRR 457
           M+  ++   ++R
Sbjct: 539 MYHALVNAYAQR 550



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 174/426 (40%), Gaps = 19/426 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    F+ L+S  A ++  + A ++L   Q  GL       T LI++   + +V     +
Sbjct: 219 PDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEAL 278

Query: 150 FHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           F E   AG I+P    Y AL+ G  K G +  A      M    V PD   ++ L+ A  
Sbjct: 279 FLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYT 338

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G  + A  +L EM A+   V P       ++    + G+  +A  V + +H   ++  
Sbjct: 339 RAGRWESARILLKEMEADG--VKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPD 396

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y + I+   +      A   +D M ++G+ PD V  + LID     G+ + A E+  
Sbjct: 397 RHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFD 456

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E +     +G  +Y+ ++      + W+    +   MK   L P + T   L+       
Sbjct: 457 EMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSG 516

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  + ++ +  MK+ GL P+   Y  L+ A  ++   +  L ++   + DG+  + V+  
Sbjct: 517 RFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLN 576

Query: 449 CIIGMCSRRYEKARTLNEHVLSF---NSGRPQIENKWTSLALM-----------VYREAI 494
            +I         A   +  VL F   N  RP +    T +  +           +Y E I
Sbjct: 577 SLINAFGEDRRIAEAFS--VLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMI 634

Query: 495 VAGTIP 500
            +G  P
Sbjct: 635 TSGCAP 640



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 2/296 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P+   F+ +++      + + AF VLR +  +G++ D   Y  +I T  K   +    +
Sbjct: 359 KPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMD 418

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F  M   GIEP+V T+  LID   K G+  +A   +  MR  N       +N +I   G
Sbjct: 419 AFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLG 478

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +    +    +LAEM  +   + P+ IT   L+     +G+   A +  + +    +K +
Sbjct: 479 EEQRWEGVEAMLAEMKEQG--LVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPS 536

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P +Y   +N  +Q G  + A +V   M   G+    V L++LI+  G   ++  AF +LQ
Sbjct: 537 PTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQ 596

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
             K  G+   +I+Y++LM A    + ++K   +YE M +    P       L +AL
Sbjct: 597 FMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSAL 652


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 166/355 (46%), Gaps = 2/355 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P    +N L+         + A QVL  + + G+  D   Y+ L+    ++G+ ++   
Sbjct: 289 KPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARI 348

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G++P+ + +  ++ G    G+  KAF     M +  V+PDR  +N +I   G
Sbjct: 349 LLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFG 408

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +  A D    M  E   ++PD +T   L+ A    G+ DRA E++  + + N    
Sbjct: 409 KYNCLGHAMDAFDRMREEG--IEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLG 466

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I IN   +   WE   ++  +M ++G++P+ +  + L+D  G +G+ + A + ++
Sbjct: 467 TTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIE 526

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             K  G+      Y +L+ A +       AL + + M++  L+ +   +N+LI A  +  
Sbjct: 527 AMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDR 586

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           ++ +   VL  MK  GL P+ ITY+ L+ A  R +  E   ++  +    G  P+
Sbjct: 587 RIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPD 641



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 179/372 (48%), Gaps = 6/372 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGA---FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P L++++ L+++  +++D   A    ++L  ++E+ L+ D  L++ LI+  A++   DA 
Sbjct: 181 PDLASYSHLLALLLNTRDPPEAALLDRLLGDLRESRLEPDAPLFSDLISAFARARLPDAA 240

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALIT 205
            E+       G+ P  +   ALI     A +VA+A   +     +  +KP    +NAL+ 
Sbjct: 241 LELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRAYNALLK 300

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G++  A  VL EM+     V PD  T   L+ A   AG+ + AR + K +    +
Sbjct: 301 GYVKIGSLKNAEQVLDEMSQ--CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGV 358

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K +  V++  +      G+W+ A +V  +M   GV PD  F + +ID  G    +  A +
Sbjct: 359 KPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMD 418

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
                + +GI   ++++++L+ A        +A+EL++ M+        +T N +I  L 
Sbjct: 419 AFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLG 478

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           +  +      +L++MK  GL PN ITY+ L+    R    +  +  +   K DG+ P+  
Sbjct: 479 EEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPT 538

Query: 446 MFKCIIGMCSRR 457
           M+  ++   ++R
Sbjct: 539 MYHALVNAYAQR 550



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 174/427 (40%), Gaps = 19/427 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P    F+ L+S  A ++  + A ++L   Q  GL       T LI++   + +V     
Sbjct: 218 EPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEA 277

Query: 149 VFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +F E   AG I+P    Y AL+ G  K G +  A      M    V PD   ++ L+ A 
Sbjct: 278 LFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAY 337

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G  + A  +L EM A+   V P       ++    + G+  +A  V + +H   ++ 
Sbjct: 338 TRAGRWESARILLKEMEADG--VKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRP 395

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y + I+   +      A   +D M ++G+ PD V  + LID     G+ + A E+ 
Sbjct: 396 DRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELF 455

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E +     +G  +Y+ ++      + W+    +   MK   L P + T   L+      
Sbjct: 456 DEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRS 515

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +  + ++ +  MK+ GL P+   Y  L+ A  ++   +  L ++   + DG+  + V+ 
Sbjct: 516 GRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL 575

Query: 448 KCIIGMCSRRYEKARTLNEHVLSF---NSGRPQIENKWTSLALM-----------VYREA 493
             +I         A   +  VL F   N  RP +    T +  +           +Y E 
Sbjct: 576 NSLINAFGEDRRIAEAFS--VLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEM 633

Query: 494 IVAGTIP 500
           I +G  P
Sbjct: 634 ITSGCAP 640



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 135/296 (45%), Gaps = 2/296 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P+   F+ +++      + + AF VLR +  +G++ D   Y  +I T  K   +    +
Sbjct: 359 KPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMD 418

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F  M   GIEP+V T+  LID   K G+  +A   +  MR  N       +N +I   G
Sbjct: 419 AFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLG 478

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +    +    +LAEM  +   + P+ IT   L+     +G+   A +  + +    +K +
Sbjct: 479 EEQRWEGVEAMLAEMKEQG--LVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPS 536

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P +Y   +N  +Q G  + A +V   M   G+    V L++LI+  G   ++  AF +LQ
Sbjct: 537 PTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQ 596

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
             K  G+   +I+Y++LM A    + ++K   +YE M +    P       L +AL
Sbjct: 597 FMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSAL 652


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 190/382 (49%), Gaps = 23/382 (6%)

Query: 83  FFKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            F+L      +TFN ML  +C++ K +  A ++LR +     + +   Y T+I      G
Sbjct: 32  MFRLRLPLCTTTFNIMLRHLCSAGKPAR-ALELLRQMP----RPNAVTYNTVIAGFCSRG 86

Query: 142 KVDAMFEVFHEMV-NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVV 199
           +V A  ++  EM    GI PN +TYG +I G  K G+V +A   +  M +K  VKP+ V+
Sbjct: 87  RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 146

Query: 200 FNALITACGQSGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           +NALI      G +D A    D + E    +        T   L+ A    G   R  E 
Sbjct: 147 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA-----TYNLLVHALFMDG---RGTEA 198

Query: 257 YKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           Y+++ +   KG  P+V+T  I IN   + G+ + A  ++++M+++GV    V  ++LI  
Sbjct: 199 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYA 258

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G+V+   ++  EA  +GI   ++ Y++L+ + S + N  +A E+   M+  ++ P 
Sbjct: 259 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 318

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
             T N L+  LC   ++ +  +++ +M   G+ P+ +TY+ L+     K DV+  L + +
Sbjct: 319 DVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRN 378

Query: 434 QAKEDGVIPNLVMFKCII-GMC 454
           +    G  P L+ +  +I G+C
Sbjct: 379 EMMNKGFNPTLLTYNALIQGLC 400



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 197/420 (46%), Gaps = 11/420 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           L  DM R  L      ++    ++C + K  + A    + +P P   T+N +++   S  
Sbjct: 28  LFADMFRLRLPLCTTTFNIMLRHLCSAGKPAR-ALELLRQMPRPNAVTYNTVIAGFCSRG 86

Query: 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHT 164
             + A  ++R ++E  G+  +   Y T+I+   K G+VD   +VF EM+  G ++P    
Sbjct: 87  RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 146

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y ALI G    G++  A      M  + V      +N L+ A    G    A++++ EM 
Sbjct: 147 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 206

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
            +   + PD  T   L+      G V +A E+++ + +  ++ T   YT  I   S+ G 
Sbjct: 207 GK--GLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQ 264

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            +    ++D+  ++G+ PD V  +ALI+    +G ++ AFEI+ E + + I+   ++Y++
Sbjct: 265 VQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNT 324

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           LM          +A +L + M    ++P + T N LI+       +   + + ++M + G
Sbjct: 325 LMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKG 384

Query: 405 LCPNTITYSILLVA-CE--RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 461
             P  +TY+ L+   C+  + DD E    ++ +  E+G+ P+   +  +I   +   E+A
Sbjct: 385 FNPTLLTYNALIQGLCKNGQGDDAE---NMVKEMVENGITPDDSTYISLIEGLTTEDERA 441



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 104/245 (42%), Gaps = 37/245 (15%)

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K+  + +   S   L+ A  +A     A  L+  M  ++L    +T N ++  LC   + 
Sbjct: 2   KSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKP 57

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKC 449
            + +E+L  M      PN +TY+ ++     +  V+  L ++ + +E  G+ PN   +  
Sbjct: 58  ARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGT 113

Query: 450 II-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 507
           +I G C   R ++A  + + +L+    +P+           V   A++ G     ++ + 
Sbjct: 114 VISGWCKVGRVDEAVKVFDEMLTKGEVKPE----------AVMYNALIGGYCDQGKLDTA 163

Query: 508 VLGCLQLPYNADIRERLVENLGVSADALKRSNLCS--LIDGFGEYDPRAFSLLEEAASFG 565
           +L           R+R+VE  GV+      + L     +DG G     A+ L+EE    G
Sbjct: 164 LL----------YRDRMVER-GVAMTVATYNLLVHALFMDGRGT---EAYELVEEMGGKG 209

Query: 566 IVPCV 570
           + P V
Sbjct: 210 LAPDV 214


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/465 (24%), Positives = 198/465 (42%), Gaps = 40/465 (8%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAF 81
           ++  L  +  L  +G + E    LE M + G +     Y      + KS   ++A+K   
Sbjct: 157 INTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYR 216

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R       P+L T++ LM      +D E    +L+ ++  GL+ +   +T  I    ++G
Sbjct: 217 RMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAG 276

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+D  + +   M +AG  P+V TY  LID    AG++  A   +  M++ + KPDRV + 
Sbjct: 277 KIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYI 336

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-------- 253
            L+      G +D   +  +EM A+ +   PD +T   L+ A    G+VD A        
Sbjct: 337 TLLDKFSDHGDLDAIKEFWSEMEADGYL--PDVVTFTILIDALCKVGKVDEAFGTLDVMK 394

Query: 254 -REVYKMIHKYN--------------------------IKGTPEVYTIAINCCSQTGDWE 286
            + V   +H YN                          ++ T   Y + I+   ++G+  
Sbjct: 395 KQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESG 454

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A   ++ M   G++P+ V  +A +      G++E A E     K  G++   I+Y+ LM
Sbjct: 455 KAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILM 514

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                A     A++L   M+     P V  +N+LI  L   D++ +  ++   MK + L 
Sbjct: 515 RCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLA 574

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           P  +TY+ LL    ++  V+    L      D   PN + F  ++
Sbjct: 575 PTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLL 619



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 155/316 (49%), Gaps = 2/316 (0%)

Query: 101  VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
            +C   K  +     L+L +   +    + Y +LI    K+   +  + +F++M NAG  P
Sbjct: 762  LCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTP 821

Query: 161  NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
            +V TY   +D   K+G++ + F  Y  M  +  KP+ +  N +I    +S ++D+A D+ 
Sbjct: 822  DVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLY 881

Query: 221  AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
             ++ +      P   T G L+      G+++ A++ ++ +  Y       +Y I +N   
Sbjct: 882  YDLMS--GDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFG 939

Query: 281  QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
            + GD E AC ++  M K+G+ PD    S ++D     GKV+ A    +E K  G+   ++
Sbjct: 940  KQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLV 999

Query: 341  SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
             Y+ ++     ++  ++AL L++ M++  + P + T NALI  L     + +  ++  ++
Sbjct: 1000 CYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEEL 1059

Query: 401  KSLGLCPNTITYSILL 416
            +  GL PN  TY+ L+
Sbjct: 1060 QLKGLEPNVFTYNALI 1075



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 164/350 (46%), Gaps = 6/350 (1%)

Query: 70   VCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +CK  KA+     F KL  +    P+L  +N L+     ++ +E A+ +   ++ AG   
Sbjct: 762  LCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTP 821

Query: 126  DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
            D   Y   +    KSGK+  +F+++ EM+  G +PN  T+  +I G  K+  + KA   Y
Sbjct: 822  DVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLY 881

Query: 186  GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
              + S +  P    +  LI    + G ++ A     EM    +   P+      LM    
Sbjct: 882  YDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLD--YGCMPNCPLYNILMNGFG 939

Query: 246  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
              G V+ A E+++ + K  I+   + Y+I ++C    G  + A   ++++   G+ PD V
Sbjct: 940  KQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLV 999

Query: 306  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
              + +I+  G + +VE A  +  E +N+GI+  + +Y++L+     A   ++A ++YE +
Sbjct: 1000 CYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEEL 1059

Query: 366  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +   L+P V T NALI          +   V   M   G  PNT T++ L
Sbjct: 1060 QLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 178/406 (43%), Gaps = 5/406 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L R G+I E   +L+ M+  G       Y      +C + K       F K+  +   P 
Sbjct: 272 LGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPD 331

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+  L+   +   D +   +    ++  G   D   +T LI    K GKVD  F    
Sbjct: 332 RVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLD 391

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G+ PN+HTY  LI G  +  ++ +A   +  M S  ++     +   I   G+SG
Sbjct: 392 VMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSG 451

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
              +A     +M  + + + P+ +   A + + A  G+++ A+E +  + K  +      
Sbjct: 452 ESGKAIKTFEKM--KTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAIT 509

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y I + C  + G  + A  +  +M + G  P+ V +++LID    A +V+ A+++ Q  K
Sbjct: 510 YNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMK 569

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
              ++  +++Y++L+         Q+A  L++ M +    P   + N L+  LC   ++ 
Sbjct: 570 EMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVD 629

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             +++L  M  +   P+ +TY+ ++    +++ V     L  Q K+
Sbjct: 630 LALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKK 675



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 162/377 (42%), Gaps = 26/377 (6%)

Query: 133  LITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            L+    K GK    + VF ++  +  I P++  Y +LIDG  KA     A+G +  M++ 
Sbjct: 758  LVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNA 817

Query: 192  NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
               PD   +N  + A G+SG +   FD+  EM        P+ IT   ++     +  +D
Sbjct: 818  GCTPDVFTYNLFLDALGKSGKIKELFDLYEEM--LFRGCKPNTITHNIVIFGLVKSNSLD 875

Query: 252  RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            +A ++Y  +   +   TP  Y   I+   + G  E A   +++M   G +P+    + L+
Sbjct: 876  KAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILM 935

Query: 312  DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
            +  G  G VE A E+ +    +GI   + SYS ++           AL  +E +K   L 
Sbjct: 936  NGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLD 995

Query: 372  PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
            P +   N +I  L    ++ + + +  +M++ G+ P+  TY+ L++       VE    +
Sbjct: 996  PDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKM 1055

Query: 432  LSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR 491
              + +  G+ PN+  +  +I               H +S N  R          A  VY+
Sbjct: 1056 YEELQLKGLEPNVFTYNALI-------------RGHSMSGNPDR----------AYAVYK 1092

Query: 492  EAIVAGTIPTVEVVSKV 508
            + +V G  P     +++
Sbjct: 1093 KMMVGGCRPNTGTFAQL 1109



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 118/562 (20%), Positives = 221/562 (39%), Gaps = 63/562 (11%)

Query: 31   SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            +YN L+R     GR+ + I LL +ME  G                               
Sbjct: 509  TYNILMRCYGKAGRVDDAIKLLSEMEENGC------------------------------ 538

Query: 87   VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              +P +   N L+     +   + A+++ + ++E  L      Y TL+    K G+V   
Sbjct: 539  --DPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEA 596

Query: 147  FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
              +F  M+     PN  ++  L+D   K G+V  A      M   N  PD + +N +I  
Sbjct: 597  TALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYG 656

Query: 207  CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNI 265
              +   V+ AF +  +M   ++   PD++T+  L+      G+++ A  V K  +H    
Sbjct: 657  LIKENRVNYAFWLFHQMKKVIY---PDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHVGD 713

Query: 266  KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                  +   +       +   +    + +    +  D+  L  L+ F    GK   A+ 
Sbjct: 714  HADGSFWEDLMGGILIEAEIGQSILFAESLVCNTICEDDSVLIPLVKFLCKHGKAVDAYN 773

Query: 326  I-LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            + L+  K+  I+  + +Y+SL+     A+  + A  L+  MK+    P V T N  + AL
Sbjct: 774  VFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDAL 833

Query: 385  CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
                ++ +  ++  +M   G  PNTIT++I++    + + ++  + L          P  
Sbjct: 834  GKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTP 893

Query: 445  VMFKCIIGMCSR--RYEKARTLNEHVLSFN------------SGRPQIENKWTSLALMVY 490
              +  +I    +  R E+A+   E +L +             +G  +  +  T+  L  +
Sbjct: 894  WTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACEL--F 951

Query: 491  REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCS--LIDGFG 548
            R  +  G  P ++  S ++ CL +    D      E L +S   L    +C   +I+G G
Sbjct: 952  RRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLS--GLDPDLVCYNLMINGLG 1009

Query: 549  EYD--PRAFSLLEEAASFGIVP 568
                   A SL +E  + GI P
Sbjct: 1010 RSQRVEEALSLFDEMRNRGITP 1031



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 126/290 (43%), Gaps = 5/290 (1%)

Query: 17   KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
            K+A    DV       + L + G+I E  DL E+M  +G       ++   F + KS   
Sbjct: 815  KNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSL 874

Query: 77   IKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
             K    ++ L+    +PT  T+  L+         E A Q    + + G   +C LY  L
Sbjct: 875  DKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNIL 934

Query: 134  ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
            +    K G V+   E+F  MV  GI P++ +Y  ++D     G+V  A   +  ++   +
Sbjct: 935  MNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGL 994

Query: 194  KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
             PD V +N +I   G+S  V+ A  +  EM      + PD  T  AL+     AG V+ A
Sbjct: 995  DPDLVCYNLMINGLGRSQRVEEALSLFDEMRN--RGITPDLYTYNALILNLGIAGMVEEA 1052

Query: 254  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
             ++Y+ +    ++     Y   I   S +G+ + A +VY  M   G  P+
Sbjct: 1053 GKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPN 1102



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 4/202 (1%)

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
           F+ +AEM   +H  +    T   +++      +V+    V+ ++ K  IK +   Y    
Sbjct: 109 FNSVAEMPRVIHTTE----TCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIF 164

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
                 G    A    + M K G + +      LI     +G    A ++ +   ++GI 
Sbjct: 165 KVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIK 224

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             + +YS+LM A    ++ +  + L + M+S+ L+P + T    I  L    ++ +   +
Sbjct: 225 PSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGI 284

Query: 397 LSDMKSLGLCPNTITYSILLVA 418
           L  M   G  P+ +TY++L+ A
Sbjct: 285 LKRMDDAGCGPDVVTYTVLIDA 306



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 59/138 (42%)

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +VE    +    + Q I   I +Y ++          ++A    E M+ +       +  
Sbjct: 137 RVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYI 196

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI  L       + ++V   M S G+ P+  TYS L+VA  ++ D+E  + LL + +  
Sbjct: 197 GLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESL 256

Query: 439 GVIPNLVMFKCIIGMCSR 456
           G+ PN+  F   I +  R
Sbjct: 257 GLRPNIYTFTICIRILGR 274


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 163/363 (44%), Gaps = 3/363 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    F+ L SV       E A Q    ++   +    +    L+   AK GK D +   
Sbjct: 23  PGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 82

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M+ AG +P V TY  +ID   K G V  A G +  M+ + + PD V +N++I   G+
Sbjct: 83  FKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGK 142

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D       EM       +PD IT  AL+      G++ +  E ++ + +  +K   
Sbjct: 143 VGRLDDTVCFFEEMKDMC--CEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNV 200

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  ++   + G  + A   Y DM + G++P+E   ++LID     G +  AF +  E
Sbjct: 201 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANE 260

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+   +++Y++L+      +N  + L L + M  + +K TV T   LI  LC    
Sbjct: 261 MLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKL 320

Query: 390 LPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           + K ++    + +  GL  N   Y+ ++    + + VE    L  Q  + G++P+   + 
Sbjct: 321 VSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYT 380

Query: 449 CII 451
            ++
Sbjct: 381 SLM 383



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 171/379 (45%), Gaps = 32/379 (8%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P   VF+AL +     G V+ A    ++M      V P   +   L+   A  G+ D  +
Sbjct: 23  PGFGVFDALFSVLIDLGMVEEAIQCFSKMKR--FRVFPKTRSCNGLLHKFAKLGKTDGVK 80

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
             +K +     K T   Y I I+C  + GD E A  ++++M  +G+IPD V  +++ID  
Sbjct: 81  RFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGF 140

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
           G  G+++      +E K+      +I+Y++L+          K LE +  MK   LKP V
Sbjct: 141 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNV 200

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            + + L+ A C    + + ++   DM+ +GL PN  TY+ L+ A  +  ++     L ++
Sbjct: 201 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANE 260

Query: 435 AKEDGVIPNLVMFKCII-GMCSRR--YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR 491
             + GV  N+V +  +I G+C      E    L+E V        +++ K T +   V  
Sbjct: 261 MLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMV--------ELDIKVTVVTFCVLI 312

Query: 492 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GE 549
           + +        ++VSK +         D   R+  + G+ A+A   +   ++IDG   G 
Sbjct: 313 DGLCKN-----KLVSKAI---------DYFGRISNDFGLQANA---AIYTAMIDGLCKGN 355

Query: 550 YDPRAFSLLEEAASFGIVP 568
               A +L E+ A  G+VP
Sbjct: 356 QVEAATTLFEQMAQKGLVP 374



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 162/355 (45%), Gaps = 20/355 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    ++G +     L E+M+ +GL+     Y++      K  + + +   FF+ 
Sbjct: 97  TYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGR-LDDTVCFFEE 155

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +    P + T+N L++  C   K  +G  +  R ++  GLK +   Y+TL+    K G
Sbjct: 156 MKDMCCEPDVITYNALINCFCKFGKLPKG-LEFFREMKRNGLKPNVVSYSTLVDAFCKEG 214

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +    + + +M   G+ PN +TY +LID   K G ++ AF     M    V+ + V + 
Sbjct: 215 MMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYT 274

Query: 202 ALITA-CGQSGAVD--RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           ALI   CG     +     D + E++ +V  V     T   L+        V +A + + 
Sbjct: 275 ALIDGLCGWENPTEGLHLLDEMVELDIKVTVV-----TFCVLIDGLCKNKLVSKAIDYFG 329

Query: 259 MI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            I + + ++    +YT  I+   +    E A ++++ M +KG++PD    ++L+D     
Sbjct: 330 RISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQ 389

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
           G V  A  +  +    G+ + +++Y+SL+   S+    QKA    E M    + P
Sbjct: 390 GNVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHP 444



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/423 (22%), Positives = 167/423 (39%), Gaps = 51/423 (12%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---- 87
           ++ LI  G + E I     M+R  +    +  +       K  K      RFFK +    
Sbjct: 32  FSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKT-DGVKRFFKDMIGAG 90

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             PT+ T+N+++       D E A  +   ++  GL  D   Y ++I    K G++D   
Sbjct: 91  AKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTV 150

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
             F EM +   EP+V TY ALI+   K G++ K    +  M+   +KP+ V ++ L+ A 
Sbjct: 151 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAF 210

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G + +A     +M   V  V P+  T  +L+ A    G +  A  +   + +  ++ 
Sbjct: 211 CKEGMMQQAIKFYVDMR-RVGLV-PNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEW 268

Query: 268 TPEVYTIAIN-CCSQTGDWEFA----------------------CSVYDDMTKK------ 298
               YT  I+  C     WE                        C + D + K       
Sbjct: 269 NVVTYTALIDGLCG----WENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKA 324

Query: 299 -----------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
                      G+  +    +A+ID      +VEAA  + ++   +G+     +Y+SLM 
Sbjct: 325 IDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMD 384

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                 N  +AL L + M    +K  +    +L+  L   +QL K    L +M   G+ P
Sbjct: 385 GNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHP 444

Query: 408 NTI 410
           + +
Sbjct: 445 DEV 447



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           T+ TF +L+  +C +   S+      R+  + GL+A+  +YT +I    K  +V+A   +
Sbjct: 304 TVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTL 363

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M   G+ P+   Y +L+DG  K G V +A      M    +K D + + +L+     
Sbjct: 364 FEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSH 423

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV--YKMIHKY---- 263
              + +A   L EM  E   + PD +   +++K     G ++ A E+  Y M H+     
Sbjct: 424 CNQLQKARSFLEEMIGE--GIHPDEVLCISVLKKHYELGCINEAVELQSYLMKHQLLTSD 481

Query: 264 NIKGTPEVY 272
           N    P +Y
Sbjct: 482 NDNALPNIY 490



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 131/308 (42%), Gaps = 18/308 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN LI    + G++ + ++   +M+R GL      Y       CK +  +++A +F+  
Sbjct: 167 TYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCK-EGMMQQAIKFYVD 225

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAK 139
                LVPN    T+  L+       +   AF++   + + G++ +   YT LI   C  
Sbjct: 226 MRRVGLVPNEY--TYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGW 283

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG-IMRSKNVKPDRV 198
               + +  +  EMV   I+  V T+  LIDG  K   V+KA   +G I     ++ +  
Sbjct: 284 ENPTEGL-HLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAA 342

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           ++ A+I    +   V+ A  +  +M  +   + PD     +LM      G V  A  +  
Sbjct: 343 IYTAMIDGLCKGNQVEAATTLFEQMAQK--GLVPDRTAYTSLMDGNFKQGNVLEALALRD 400

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + +  +K     YT  +   S     + A S  ++M  +G+ PDEV   +++      G
Sbjct: 401 KMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELG 460

Query: 319 KVEAAFEI 326
            +  A E+
Sbjct: 461 CINEAVEL 468


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 124/546 (22%), Positives = 233/546 (42%), Gaps = 35/546 (6%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN +I      G+  E   LLE    KG +     Y+       +    + EA + F+
Sbjct: 309 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNC-ILTCLRKMGKVDEALKVFE 367

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +     P LST+N+L+ +   +   + AF++   +Q+AGL  + +    ++    KS K
Sbjct: 368 EMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK 427

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D    +F EM      P+  T+ +LIDG  K G+V  A+  Y  M   + + + +V+ +
Sbjct: 428 LDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTS 487

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI      G  +    +  +M  +     PD   +   M     AG+ ++ R +++ I  
Sbjct: 488 LIKNFFNHGRKEDGHKIYKDMINQ--NCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKA 545

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                    Y+I I+   + G       ++  M ++G + D    + +ID     GKV  
Sbjct: 546 RRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNK 605

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A+++L+E K +G    +++Y S++   +      +A  L+E  KS +++  V   ++LI 
Sbjct: 606 AYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLID 665

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
                 ++ +   +L ++   GL PN  T++ LL A  + +++   L+     KE    P
Sbjct: 666 GFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTP 725

Query: 443 NLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 500
           N V +  +I G+C  R++ KA                    W  +     ++ +   TI 
Sbjct: 726 NQVTYGILINGLCKVRKFNKAFVF-----------------WQEMQ----KQGMKPSTIS 764

Query: 501 TVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEE 560
              ++S +     +     + +R   N GV   A   + +  L +G    D  AFSL EE
Sbjct: 765 YTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMD--AFSLFEE 822

Query: 561 AASFGI 566
               G+
Sbjct: 823 TRRRGL 828



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 202/436 (46%), Gaps = 11/436 (2%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D +  L +YN LI    R G++    +L + M++ GL    +  +     +CKSQK + E
Sbjct: 372 DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK-LDE 430

Query: 80  AFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A   F+     V  P   TF  L+         + A++V   + ++  + +  +YT+LI 
Sbjct: 431 ACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIK 490

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
                G+ +   +++ +M+N    P++      +D   KAG+  K    +  ++++   P
Sbjct: 491 NFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVP 550

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D   ++ LI    ++G  +  +++   M  +   +D     I  ++      G+V++A +
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNI--VIDGFCKCGKVNKAYQ 608

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + + +     + T   Y   I+  ++    + A  ++++   K +  + V  S+LID  G
Sbjct: 609 LLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+++ A+ IL+E   +G++  + +++SL+ A   A+   +AL  ++ MK +K  P   
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQV 728

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T   LI  LC   +  K      +M+  G+ P+TI+Y+ ++    +  ++     L  + 
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788

Query: 436 KEDGVIPNLVMFKCII 451
           K +G +P+   +  +I
Sbjct: 789 KANGGVPDSACYNAMI 804



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/424 (22%), Positives = 188/424 (44%), Gaps = 28/424 (6%)

Query: 90  PTLST-FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P+++T   M++    ++K  EG + V++++++   +     YTTLI   +     D M  
Sbjct: 131 PSVNTCIEMVLGCVKANKLREG-YDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLT 189

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F +M   G EP VH +  LI G AK G+V  A      M+S ++  D V++N  I + G
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G VD A+    E+  E + + PD +T  +++     A ++D A E+++ + K      
Sbjct: 250 KVGKVDMAWKFFHEI--EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I      G ++ A S+ +    KG IP  +  + ++      GKV+ A ++ +
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFE 367

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E K    +  + +Y+ L+     A     A EL + M+   L P V T+N ++  LC   
Sbjct: 368 EMKKDA-APNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQ 426

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L +   +  +M      P+ IT+  L+    +   V+    +  +  +     N +++ 
Sbjct: 427 KLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYT 486

Query: 449 CIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 508
            +I                   FN GR +  +K       +Y++ I     P +++++  
Sbjct: 487 SLIKN----------------FFNHGRKEDGHK-------IYKDMINQNCSPDLQLLNTY 523

Query: 509 LGCL 512
           + C+
Sbjct: 524 MDCM 527



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 167/365 (45%), Gaps = 39/365 (10%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A+ E  +  + VP+    ++++L+     +  +   +++   ++E G   D + Y  +I
Sbjct: 537 RAMFEEIKARRFVPDA--RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI 594

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K GKV+  +++  EM   G EP V TYG++IDG AK  ++ +A+  +   +SK ++
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
            + V++++LI   G+ G +D A+ +L E+  +   + P+  T  +L+ A   A +++ A 
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQK--GLTPNLYTWNSLLDALVKAEEINEAL 712

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
             ++ +                         E  C+           P++V    LI+  
Sbjct: 713 VCFQSMK------------------------ELKCT-----------PNQVTYGILINGL 737

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               K   AF   QE + QG+    ISY++++   + A N  +A  L++  K+    P  
Sbjct: 738 CKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDS 797

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           +  NA+I  L +G++      +  + +  GL  +  T  +LL    + D +E   ++ + 
Sbjct: 798 ACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQAAIVGAV 857

Query: 435 AKEDG 439
            +E G
Sbjct: 858 LRETG 862



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/465 (20%), Positives = 179/465 (38%), Gaps = 71/465 (15%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAM 146
           P P       ++ V    KD   A +  R  +       C + Y +L+   A+    DA+
Sbjct: 63  PQPEF-----VIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLVMARCRNFDAL 117

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  EM  AG  P+V+T   ++ GC KA ++ + +    +MR    +P    F+A  T 
Sbjct: 118 DQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRP---AFSAYTTL 174

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            G   AV+ +                                  D    +++ + +   +
Sbjct: 175 IGAFSAVNHS----------------------------------DMMLTLFQQMQELGYE 200

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            T  ++T  I   ++ G  + A S+ D+M    +  D V  +  ID  G  GKV+ A++ 
Sbjct: 201 PTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKF 260

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             E +  G+    ++Y+S++G    A    +A+E++EH++  +  P     N +I     
Sbjct: 261 FHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGS 320

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +  +   +L   ++ G  P+ I Y+ +L    +   V+  L +  + K+D   PNL  
Sbjct: 321 AGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-PNLST 379

Query: 447 FKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
           +  +I M  R  + + A  L + +                           AG  P V  
Sbjct: 380 YNILIDMLCRAGKLDTAFELRDSMQK-------------------------AGLFPNVRT 414

Query: 505 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 549
           V+ ++  L      D    + E +            CSLIDG G+
Sbjct: 415 VNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 32/192 (16%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML 98
           GRI E   +LE++ +KGL                                 P L T+N L
Sbjct: 671 GRIDEAYLILEELMQKGL--------------------------------TPNLYTWNSL 698

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           +     +++   A    + ++E     +   Y  LI    K  K +  F  + EM   G+
Sbjct: 699 LDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGM 758

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           +P+  +Y  +I G AKAG +A+A   +   ++    PD   +NA+I           AF 
Sbjct: 759 KPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFS 818

Query: 219 VLAEMNAEVHPV 230
           +  E      P+
Sbjct: 819 LFEETRRRGLPI 830


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 190/399 (47%), Gaps = 10/399 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLM-SVCA 103
           LL++ME++G++  + VY+     +C + +       +  +  +  P++ T+ +L+ ++C 
Sbjct: 55  LLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCK 114

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
           S++ S+ +  +L  + EAG   +   Y TLI    K G +D    +F++M+     P+V 
Sbjct: 115 SARISDASL-ILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVF 173

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           TY  LIDG  K  +          M     +P+ + +N L+ +  +SG    AF+ LA+M
Sbjct: 174 TYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFN-LAQM 232

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQ 281
                   P H T   ++      GQ+D A E+++++        P++YT  I I+   +
Sbjct: 233 MLR-RDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGC--LPDIYTYNIMISGACR 289

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
               + A  + + MT+ G  PD V  ++++     A +V+ A+E+ +  +N G  + +++
Sbjct: 290 ANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVT 349

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
            S+L+     ++    A +L   M+     P V     LI   C  DQL K++   S+M 
Sbjct: 350 CSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEML 409

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
             G  P  ITYSI++    +   V  G MLL    E GV
Sbjct: 410 DKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 195/427 (45%), Gaps = 20/427 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN---- 89
            +R+ +  E  DL ++    GL   D + ++   N  CK+ +  ++A+R    +      
Sbjct: 8   FVRKKKAQEAYDLFKN-HLCGLCSPDSITYSTLINGFCKA-RDFQQAYRLLDEMEKRGIV 65

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDA 145
           P  + +N ++     +   + A     LV    ++  C      YT L+    KS ++  
Sbjct: 66  PHNAVYNTIIKGLCDNGRVDSA-----LVHYRDMQRHCAPSVITYTILVDALCKSARISD 120

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              +  +M+ AG  PNV TY  LI+G  K G + +A   +  M   +  PD   +N LI 
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 180

Query: 206 A-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
             C Q    D A  +L EM    +  +P+ IT   LM +   +G+   A  + +M+ + +
Sbjct: 181 GYCKQERPQDGA-KLLQEMVK--YGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRD 237

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            K +   + + I+   + G  + A  ++  MT +G +PD    + +I  A  A +++ A 
Sbjct: 238 CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDAR 297

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++L+     G    +++Y+S++     A    +A E+YE +++      V T + LI  L
Sbjct: 298 QLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGL 357

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   +L    ++L +M+  G  P+ + Y+IL+    + D ++  L   S+  + G +P +
Sbjct: 358 CKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTV 417

Query: 445 VMFKCII 451
           + +  +I
Sbjct: 418 ITYSIVI 424



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 157/370 (42%), Gaps = 48/370 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L +  RIS+   +LEDM   G       Y+      CK     +    F +++ N   P 
Sbjct: 112 LCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPD 171

Query: 92  LSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           + T+N+L+   C   +  +GA ++L+ + + G + +   Y TL+ +  KSGK    F + 
Sbjct: 172 VFTYNILIDGYCKQERPQDGA-KLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLA 230

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M+    +P+  T+  +ID   K GQ+  A+  + +M  +   PD   +N +I+   ++
Sbjct: 231 QMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRA 290

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             +D A  +L  M     P  PD +T  +++     A QVD A EVY+++          
Sbjct: 291 NRIDDARQLLERMTEAGCP--PDVVTYNSIVSGLCKASQVDEAYEVYEVLR--------- 339

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
                                       G   D V  S LID    + +++ A ++L+E 
Sbjct: 340 --------------------------NGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM 373

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC----- 385
           +  G +  +++Y+ L+     A    K+L  +  M      PTV T + +I  LC     
Sbjct: 374 ERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARV 433

Query: 386 -DGDQLPKTM 394
            DG  L KTM
Sbjct: 434 RDGCMLLKTM 443



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 135/323 (41%), Gaps = 4/323 (1%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L++   +  K    +++F   +     P+  TY  LI+G  KA    +A+     M  + 
Sbjct: 4   LLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 63

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + P   V+N +I     +G VD A     +M        P  IT   L+ A   + ++  
Sbjct: 64  IVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCA---PSVITYTILVDALCKSARISD 120

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A  + + + +         Y   IN   + G+ + A  +++ M +    PD    + LID
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 180

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                 + +   ++LQE    G     I+Y++LM +   +  +  A  L + M     KP
Sbjct: 181 GYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKP 240

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           +  T N +I   C   QL    E+   M   G  P+  TY+I++    R + ++    LL
Sbjct: 241 SHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLL 300

Query: 433 SQAKEDGVIPNLVMFKCII-GMC 454
            +  E G  P++V +  I+ G+C
Sbjct: 301 ERMTEAGCPPDVVTYNSIVSGLC 323


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 199/446 (44%), Gaps = 19/446 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AI 77
           V+  L  YN LI    + G++ E   L  +M  KGL   D  Y     + CK  K   A+
Sbjct: 351 VAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVAL 410

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               +  ++    T+  ++ L+S          A  +   +   GLK +  +YT+LI+  
Sbjct: 411 HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGY 470

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G++   F ++HEM   GI PN +T+ ALI G   A ++A+A   +G M   NV P+ 
Sbjct: 471 CKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNE 530

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V +N LI    + G   RAF++L EM  +   + PD  T   L+    + G+V  ARE  
Sbjct: 531 VTYNVLIEGHCKEGNTVRAFELLDEMVEK--GLVPDTYTYRPLISGLCSTGRVSEAREFM 588

Query: 258 KMIH----KYN-IKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
             +     K N I+G  P V  YT  IN   + G  + A  +  +M     +P++   + 
Sbjct: 589 NDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYAC 648

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
            +D+    G +E A + L +   +G     ++Y+ L+         Q+A E+  +M    
Sbjct: 649 FLDYLTSEGNIEKAIQ-LHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSG 707

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           + P   + + +I   C    L + +++   M + G+ P+T+ Y+ L+  C    ++    
Sbjct: 708 ISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAF 767

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMC 454
            L       GV PN   +  +I G C
Sbjct: 768 ELRDDMMRRGVKPNRATYNSLIHGTC 793



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 169/377 (44%), Gaps = 13/377 (3%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P+L  +N L+ S+C   K  E A  +   +   GL  +   Y+ LI +  K GK+D    
Sbjct: 353 PSLFVYNALINSMCKDGKLDE-AESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALH 411

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              +M   GI+  V+ Y +LI G  K G++  A   +  M +  +KP+ V++ +LI+   
Sbjct: 412 FLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYC 471

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  AF +  EM  +   + P+  T  AL+    +A ++  A +++  + ++N+   
Sbjct: 472 KEGELHNAFRLYHEMTGK--GISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPN 529

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y + I    + G+   A  + D+M +KG++PD      LI      G+V  A E + 
Sbjct: 530 EVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMN 589

Query: 329 EAKNQ--------GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + + +        G    +++Y++L+          KA  L   M +    P  +T    
Sbjct: 590 DLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACF 649

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +  L     + K ++ L D+   G   NT+TY+IL+    +   ++    +L    + G+
Sbjct: 650 LDYLTSEGNIEKAIQ-LHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGI 708

Query: 441 IPNLVMFKCIIGMCSRR 457
            P+ + +  II    RR
Sbjct: 709 SPDCISYSTIIYEYCRR 725



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 159/366 (43%), Gaps = 3/366 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T + +++     +    A  +   +  +GL+ D  +YT ++ +  +        EV
Sbjct: 178 PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREV 237

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M ++G + +V TY   I G  K  +V +A     ++  K ++ D   +  L+    +
Sbjct: 238 IGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCK 297

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
               +   +++ EM  E   V P    +  L+      G +  A ++   + K+ +  + 
Sbjct: 298 VEEFEAGEEMMNEM-IEFGFV-PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSL 355

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   IN   + G  + A S++++M  KG+ P++V  S LID     GK++ A   L +
Sbjct: 356 FVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGK 415

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI   +  YSSL+         + A  L++ M +  LKP V    +LI+  C   +
Sbjct: 416 MTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE 475

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L     +  +M   G+ PNT T++ L+      + +     L  +  E  VIPN V +  
Sbjct: 476 LHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 450 II-GMC 454
           +I G C
Sbjct: 536 LIEGHC 541



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 103/465 (22%), Positives = 192/465 (41%), Gaps = 48/465 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N LIR  +    + L +++   GL     VY A   ++C+ +  I+      ++     +
Sbjct: 188 NGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCD 247

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            +++T+N+ +     ++    A ++  L+   GL+AD   Y TL+    K  + +A  E+
Sbjct: 248 LSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEM 307

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            +EM+  G  P+      L+DG  K G +  AF     ++   V P   V+NALI +  +
Sbjct: 308 MNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCK 367

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT- 268
            G +D A  +   M  +   + P+ +T   L+ +    G++D A      + +  IK T 
Sbjct: 368 DGKLDEAESLFNNMGHK--GLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATV 425

Query: 269 --------------------------------PEV--YTIAINCCSQTGDWEFACSVYDD 294
                                           P V  YT  I+   + G+   A  +Y +
Sbjct: 426 YPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHE 485

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           MT KG+ P+    +ALI    HA ++  A ++  E     +    ++Y+ L+       N
Sbjct: 486 MTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGN 545

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------LGLC 406
             +A EL + M    L P   T   LI+ LC   ++ +  E ++D++          G  
Sbjct: 546 TVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCL 605

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           PN +TY+ L+    +   ++   +L  +      +PN   + C +
Sbjct: 606 PNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFL 650



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 72/149 (48%)

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G++P    LS +++      +   A  +  E  + G+   +  Y++++ +    K+
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           + +A E+   M+S     +V+T N  I  LC   ++ + +E+ + +   GL  +  TY  
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L++   + ++ E G  ++++  E G +P+
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPS 319


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 177/383 (46%), Gaps = 5/383 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L ++GR+ E + LL +M+RKGL ++D V ++   +   S+  +      F  +     +P
Sbjct: 55  LCKEGRVEEAMRLLGEMKRKGL-EVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISP 113

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            +  ++ L++          A  VL  + E G++ D   YT +I    K G+     ++F
Sbjct: 114 NVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLF 173

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M   G EP+  TY  LI+G  K G +  AF  +  M  K  + + V +N LI     +
Sbjct: 174 DLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNN 233

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D A  + + +  + + V+PD IT   +++     G++D+A E+Y  + +    G   
Sbjct: 234 GKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLF 293

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
              I I    ++G  + A  ++  + K G++P     S +ID       +  A  +    
Sbjct: 294 TCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRM 353

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K  G+S  +  Y++LM +     + ++A  L++ MK    +P   + N +I        +
Sbjct: 354 KISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDI 413

Query: 391 PKTMEVLSDMKSLGLCPNTITYS 413
               E+L+DM+ +GL P+  TYS
Sbjct: 414 HSAKELLNDMQQMGLTPDAYTYS 436



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/446 (23%), Positives = 187/446 (41%), Gaps = 9/446 (2%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           K  N   D+       N L ++ R+ + +DLL +ME          Y      +CK  + 
Sbjct: 2   KRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR- 60

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ----VLRLVQEAGLKADCKLYTT 132
           ++EA R    +    L    ++ S   S   S+G       +   + E G+  +  +Y+ 
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           LI    K G       V H M   GI+P+V+TY  +I G  K G+  KA   + +M  K 
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKG 180

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
            +P  V +N LI    + G +  AF +   M  +   ++   ++   L+    N G++D 
Sbjct: 181 EEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEV--VSYNTLIMGLCNNGKLDE 238

Query: 253 AREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           A +++  + +      P+V T    I    + G  + A  +YD M ++G   +      L
Sbjct: 239 AMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHIL 298

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I     +G ++ A E+ +     G+     +YS ++           A  L+  MK   L
Sbjct: 299 IGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGL 358

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            PT+   N L+ +LC    L +   +  +MK     P+TI+++I++    +  D+     
Sbjct: 359 SPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKE 418

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSR 456
           LL+  ++ G+ P+   +   I   S+
Sbjct: 419 LLNDMQQMGLTPDAYTYSSFINRLSK 444



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 129/278 (46%), Gaps = 6/278 (2%)

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M+  N+ PD V +N +I    +   +++A D+L EM  E    +P+  T   LM      
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEM--EGSSCEPNSFTYCILMDGLCKE 58

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G+V+ A  +   + +  ++    VY+  I+     G  +   +++D+M +KG+ P+ V  
Sbjct: 59  GRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVY 118

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           S LI+     G    A  +L     +GI   + +Y+ ++G        +KAL+L++ M  
Sbjct: 119 SCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTE 178

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
              +P+  T N LI  LC    +    ++   M   G     ++Y+ L++       ++ 
Sbjct: 179 KGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDE 238

Query: 428 GLMLLSQAKEDG--VIPNLVMFKCII-GMCSR-RYEKA 461
            + L S   EDG  V P+++ F  +I G+C   R +KA
Sbjct: 239 AMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKA 276



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 25/364 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----- 87
           N L ++G I +   + E M  KG       Y+     +C + K + EA + F  +     
Sbjct: 193 NGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGK-LDEAMKLFSSLLEDGN 251

Query: 88  -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P + TFN ++         + A ++   + E G   +      LI    KSG +D  
Sbjct: 252 YVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKA 311

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E++  +   G+ P+  TY  +IDG  K   +  A G +  M+   + P    +N L+ +
Sbjct: 312 MELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMAS 371

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +  ++++A  +  EM       +PD I+   ++     AG +  A+E+   + +  + 
Sbjct: 372 LCKESSLEQARRLFQEMKES--NCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGL- 428

Query: 267 GTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            TP+ YT +  IN  S+ G  E A   +D M   G+ PD     +LI   G   ++E   
Sbjct: 429 -TPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVI 487

Query: 325 EILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            +L++  + G+ + + I+ S L   C++A          EH+  ++L P  S+ ++  T+
Sbjct: 488 NLLRQMADMGVILDLEITNSILTFLCNSA----------EHLHVMELLPNFSSESSGGTS 537

Query: 384 L-CD 386
           + CD
Sbjct: 538 ISCD 541



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/428 (20%), Positives = 173/428 (40%), Gaps = 40/428 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   ++G   E   +L  M  +G+      Y      +CK  +A ++A   F L+     
Sbjct: 123 NGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRA-RKALDLFDLMTEKGE 181

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P+  T+N+L++          AF++   + E G + +   Y TLI     +GK+D   +
Sbjct: 182 EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMK 241

Query: 149 VFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           +F  ++  G  +EP+V T+  +I G  K G++ KA   Y  M  +    +    + LI  
Sbjct: 242 LFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGE 301

Query: 207 CGQSGAVDRAFDVLAEMNA---------------------------------EVHPVDPD 233
             +SG +D+A ++   ++                                  ++  + P 
Sbjct: 302 YIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPT 361

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
                 LM +      +++AR +++ + + N +     + I I+   + GD   A  + +
Sbjct: 362 LFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLN 421

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           DM + G+ PD    S+ I+     G++E A          GI+     Y SL+       
Sbjct: 422 DMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLND 481

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             ++ + L   M  + +   +   N+++T LC+  +    ME+L +  S      +I+  
Sbjct: 482 EIEEVINLLRQMADMGVILDLEITNSILTFLCNSAEHLHVMELLPNFSSESSGGTSISCD 541

Query: 414 ILLVACER 421
            LL+  ++
Sbjct: 542 KLLMKIQK 549


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 204/437 (46%), Gaps = 19/437 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L S +R  + G  +E +  L  +  KG    ++   K+ H  F     + K I +A +  
Sbjct: 61  LKSLSRSCKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLF-----TSKTIDKAIQVM 115

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            ++ N   P L  +N +++    +   + A+QVL  ++  G   D   Y  LI +    G
Sbjct: 116 HILENHGHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRG 175

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +D+  E  ++++    +P V TY  LI+     G + +A      M   N++PD   +N
Sbjct: 176 MLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYN 235

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           ++I    + G VDRAF +++ ++++ +   PD IT   L++   N G+ +   E+   + 
Sbjct: 236 SIIRGMCREGYVDRAFQIISSISSKGYA--PDVITYNILLRGLLNQGKWEAGYELMSDMV 293

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
               +     Y++ I+   + G  E    +  DM KKG+ PD      LI      G+V+
Sbjct: 294 ARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVD 353

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E+L    + G    I++Y++++      K   +AL ++E +  +   P  S+ N++ 
Sbjct: 354 LAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMF 413

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD---DVEVGLMLLSQAKED 438
           +AL       + + ++ +M   G+ P+ ITY+  L++C  +D   D  + L++  + +  
Sbjct: 414 SALWSTGHKVRALGMILEMLDKGVDPDGITYNS-LISCLCRDGMVDEAIELLVDMEMESS 472

Query: 439 GVIPNLVMFKCI-IGMC 454
              P++V +  + +G+C
Sbjct: 473 ECKPSVVSYNIVLLGLC 489



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 166/345 (48%), Gaps = 6/345 (1%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D  L  +L  +C K+G  +        +VN G +P+V     LI G   +  + KA    
Sbjct: 57  DTHLLKSLSRSC-KAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVM 115

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
            I+ +    PD + +NA+IT   ++  +D A+ VL  M  +     PD +T   L+ +  
Sbjct: 116 HILENHG-HPDLIAYNAIITGFCRANRIDSAYQVLDRMKNK--GFSPDIVTYNILIGSLC 172

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           + G +D A E    + K N K T   YTI I      G  + A  + D+M +  + PD  
Sbjct: 173 SRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMF 232

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             +++I      G V+ AF+I+    ++G +  +I+Y+ L+    N   W+   EL   M
Sbjct: 233 TYNSIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDM 292

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
            +   +  V T + LI+++C   ++ + + +L DMK  GL P+   Y  L+ A  ++  V
Sbjct: 293 VARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRV 352

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHV 468
           ++ + +L     DG +P++V +  I+  +C  +R ++A ++ E +
Sbjct: 353 DLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKL 397



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 168/389 (43%), Gaps = 3/389 (0%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           +   LR +   G K D  L T LI     S  +D   +V H + N G  P++  Y A+I 
Sbjct: 76  SLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHG-HPDLIAYNAIIT 134

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G  +A ++  A+     M++K   PD V +N LI +    G +D A +   ++  E    
Sbjct: 135 GFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKE--NC 192

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  +T   L++A    G +D A ++   + + N++     Y   I    + G  + A  
Sbjct: 193 KPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQ 252

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +   ++ KG  PD +  + L+    + GK EA +E++ +   +G    +++YS L+ +  
Sbjct: 253 IISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVC 312

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
                ++ + L + MK   LKP     + LI ALC   ++   +EVL  M S G  P+ +
Sbjct: 313 RDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIV 372

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
            Y+ +L    ++   +  L +  +  E G  PN   +  +         K R L   +  
Sbjct: 373 NYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEM 432

Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTI 499
            + G       + SL   + R+ +V   I
Sbjct: 433 LDKGVDPDGITYNSLISCLCRDGMVDEAI 461



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 182/409 (44%), Gaps = 20/409 (4%)

Query: 20  NYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           N+ H     L +YN +I    R  RI     +L+ M+ KG       Y+    ++C S+ 
Sbjct: 120 NHGH---PDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLC-SRG 175

Query: 76  AIKEAFRF----FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            +  A  F     K    PT+ T+ +L+         + A ++L  + E  L+ D   Y 
Sbjct: 176 MLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYN 235

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           ++I    + G VD  F++   + + G  P+V TY  L+ G    G+    +     M ++
Sbjct: 236 SIIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVAR 295

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
             + + V ++ LI++  + G V+    +L +M  +   + PD      L+ A    G+VD
Sbjct: 296 GCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKK--GLKPDGYCYDPLIAALCKEGRVD 353

Query: 252 RAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
            A EV  ++   +    P++  Y   + C  +    + A S+++ + + G  P+    ++
Sbjct: 354 LAIEVLDVM--ISDGCVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNS 411

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY--EHMKS 367
           +       G    A  ++ E  ++G+    I+Y+SL+          +A+EL     M+S
Sbjct: 412 MFSALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMES 471

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            + KP+V + N ++  LC   ++   +EVL+ M   G  PN  TY+ L+
Sbjct: 472 SECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLI 520


>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
          Length = 795

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 200/441 (45%), Gaps = 11/441 (2%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +    ++YN LI    R+G   E   + ++M+  G  + DKV      +V    +  +EA
Sbjct: 251 IERDRYTYNTLISCCRRRGLHREAAQVFDEMKAAGF-EPDKVTFNSLLDVYGKARKHEEA 309

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
               K + N    P++ T+N L+S        E A ++ + ++  G+K D   YTTLI+ 
Sbjct: 310 IGVLKRMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISG 369

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             + GK+DA    + EMV  G  PN+ TY ALI      G+  +    +  +RS    PD
Sbjct: 370 LDRVGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPD 429

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +N L++  GQ+G       V  EM    +   P+  T  +L+ + +  G  D+A E+
Sbjct: 430 VVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGY--IPERDTYVSLISSYSRCGLFDQAMEI 487

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           YK + +  I      Y   ++  ++ G WE A  ++ +M  +   PDE+  S+L+    +
Sbjct: 488 YKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYAN 547

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           A K++    + ++   + I        +L+   +   N  +  + ++ ++  +    ++ 
Sbjct: 548 AKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINV 607

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
           +NA+++       + K  EVLS M    +  +  TY+ L+    R  D E    +L++ K
Sbjct: 608 LNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIK 667

Query: 437 EDGVIPNLVMFKCIIGMCSRR 457
             G+ P+   +  +I    R+
Sbjct: 668 SSGMRPDRYSYNTVIYAYGRK 688



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 152/372 (40%), Gaps = 48/372 (12%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           ++ A   P+   Y AL+   ++AG+   A   +  M    V+P  V +N +         
Sbjct: 175 ILEAAPAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVV--------- 225

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
               F   ++M+     V        AL+ +    G ++R R  Y  +            
Sbjct: 226 ----FHAYSKMSVPWKEV-------VALVDSMKEDG-IERDRYTYNTL------------ 261

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+CC + G    A  V+D+M   G  PD+V  ++L+D  G A K E A  +L+  +N
Sbjct: 262 ---ISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMEN 318

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G +  +++Y+SL+ A       ++ALEL + M+   +KP V T   LI+ L    ++  
Sbjct: 319 AGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDA 378

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            +   S+M   G  PN  TY+ L+     +      + +    +  G +P++V +  ++ 
Sbjct: 379 ALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLS 438

Query: 453 MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIP 500
           +  +    +           +G     + + SL            A+ +Y+  I AG  P
Sbjct: 439 VFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYP 498

Query: 501 TVEVVSKVLGCL 512
            +   + VL  L
Sbjct: 499 DISTYNAVLSAL 510



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 156/347 (44%), Gaps = 33/347 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L+SV   +        V + +++AG   +   Y +LI++ ++ G  D   E+
Sbjct: 428 PDVVTWNTLLSVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEI 487

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M+ AGI P++ TY A++   A+ G+  +A   +  M  ++ KPD + +++L+ A   
Sbjct: 488 YKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYAN 547

Query: 210 SGAVDR----AFDVLAE--------------MNAEVHPVDP---------------DHIT 236
           +  +D+    + D+ AE              +N +V+ +                 D   
Sbjct: 548 AKKLDKMKTLSEDIYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSLDINV 607

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           + A++        V +  EV  ++ + +I  +   Y   ++  S+ GD E   S+  ++ 
Sbjct: 608 LNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIK 667

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
             G+ PD    + +I   G  G+++ A  +  E K  G+   I++Y+  + +      ++
Sbjct: 668 SSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFE 727

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +A++L  ++ +   +P   T N+++       ++ +    LS++  +
Sbjct: 728 EAIDLVRYLVTQGCRPNERTFNSILQGYSRHGRMVEAKSFLSNLPKI 774



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 109/233 (46%), Gaps = 10/233 (4%)

Query: 26  SEQLHSY---NRLIRQGRISECIDLLEDMERKGLLDMDKVY-HARFFNVCKSQKAIKEAF 81
           S  LH+Y    +L +   +SE I   E +ER   L    V  + +  N+ +++KA +E  
Sbjct: 539 SSLLHAYANAKKLDKMKTLSEDI-YAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELR 597

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R    +    ++  N ++S+   +K  +   +VL L+ E  +      Y +L+   ++ G
Sbjct: 598 RRRCSL---DINVLNAMVSIYGKNKMVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLG 654

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
             +    +  E+ ++G+ P+ ++Y  +I    + GQ+ +A   +  M+   VKPD V +N
Sbjct: 655 DCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYN 714

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
             I +   +   + A D++  +  +     P+  T  ++++  +  G++  A+
Sbjct: 715 IFIKSYVANIMFEEAIDLVRYLVTQ--GCRPNERTFNSILQGYSRHGRMVEAK 765


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 193/434 (44%), Gaps = 5/434 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
            +R+G I E + + + M   G+      Y+     +CK  K  K A     ++     P 
Sbjct: 55  FMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPN 114

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             TF +L+       +   A ++L  +++  L      Y  +I        +    ++  
Sbjct: 115 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 174

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M  +G++PNV  Y  LI G A  G++ +A      M    V PD   +NA+I+   ++G
Sbjct: 175 KMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAG 234

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A   L E+      + PD +T GA +   +  G++  A + +  +  + +     +
Sbjct: 235 KMEEASTYLLEIQG--RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPL 292

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           YT+ IN   + G+   A S++  +   GV+PD    SA I      G+V+ A ++  E K
Sbjct: 293 YTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELK 352

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   + +YSSL+         +KA EL++ M    + P +   NAL+  LC    + 
Sbjct: 353 EKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQ 412

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  ++   M   GL P+++TYS ++    + ++V     L  +    GV P+  ++  ++
Sbjct: 413 RARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 472

Query: 452 GMCSRRYEKARTLN 465
             C +  +  + +N
Sbjct: 473 HGCCKEGDMEKAMN 486



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 189/384 (49%), Gaps = 7/384 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+  ++  +++     KD   A ++L  +  +GLK +  +Y+TLI   A  G+++    +
Sbjct: 148 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRL 207

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M  +G+ P++  Y A+I   +KAG++ +A      ++ + +KPD V F A I    +
Sbjct: 208 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSK 267

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +  A     EM    H + P++     L+     AG +  A  +++ +H   +   P
Sbjct: 268 TGKMTEAAKYFDEMLD--HGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGV--LP 323

Query: 270 EVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +V T +  I+   + G  + A  V+ ++ +KG++PD    S+LI      G+VE AFE+ 
Sbjct: 324 DVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELH 383

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E   +GI+  I  Y++L+     + + Q+A +L++ M    L+P   T + +I   C  
Sbjct: 384 DEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKS 443

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           + + +   +  +M S G+ P++  Y+ L+  C ++ D+E  + L  +  + G    L   
Sbjct: 444 ENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 503

Query: 448 KCIIGMC-SRRYEKARTLNEHVLS 470
             I G C S + ++A  L + +++
Sbjct: 504 TLIDGYCKSCKIQEASQLFQEMIA 527



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 177/381 (46%), Gaps = 26/381 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L++ GR+ E + +  +++ KGL+     Y +     CK Q  +++AF     +      P
Sbjct: 335 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK-QGEVEKAFELHDEMCLKGIAP 393

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            +  +N L+     S D + A ++   + E GL+ D   Y+T+I    KS  V   F +F
Sbjct: 394 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 453

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           HEM + G++P+   Y AL+ GC K G + KA   +  M  K      + FN LI    +S
Sbjct: 454 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKS 512

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             +  A  +  EM A+   + PDH+T   ++     AG+++ A  ++K + + N+     
Sbjct: 513 CKIQEASQLFQEMIAK--QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL----- 565

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
                        D  FA  +++ M  KGV PDEV    +I        +  AF++  E 
Sbjct: 566 -----------IVDTVFA--LFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEV 612

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +G+      +  L+ A    ++  +A +L + M  + LKP+++  + L+ +  +  ++
Sbjct: 613 VGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKM 672

Query: 391 PKTMEVLSDMKSLGLCPNTIT 411
            +   V   +KSLGL P+T T
Sbjct: 673 DEATRVFEGVKSLGLVPDTTT 693



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 191/428 (44%), Gaps = 25/428 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK----LVPNPTL 92
           + G+++E     ++M   GL+  + +Y     N       + EA   F+    L   P +
Sbjct: 267 KTGKMTEAAKYFDEMLDHGLMPNNPLYTV-LINGHFKAGNLMEALSIFRHLHALGVLPDV 325

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T +  +     +   + A +V   ++E GL  D   Y++LI+   K G+V+  FE+  E
Sbjct: 326 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDE 385

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   GI PN+  Y AL+DG  K+G + +A   +  M  K ++PD V ++ +I    +S  
Sbjct: 386 MCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN 445

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V  AF +  EM ++   V P      AL+  C   G +++A  +++ + +     T    
Sbjct: 446 VAEAFSLFHEMPSK--GVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFN 503

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA--------- 323
           T+    C      E A  ++ +M  K ++PD V  + +ID+   AGK+E A         
Sbjct: 504 TLIDGYCKSCKIQE-ASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQE 562

Query: 324 --------FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
                   F + ++   +G+    ++Y  ++ A     N  +A +L + +    +    +
Sbjct: 563 RNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT 622

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
             + LITALC  + L +  ++L +M  LGL P+    S L+ +      ++    +    
Sbjct: 623 IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGV 682

Query: 436 KEDGVIPN 443
           K  G++P+
Sbjct: 683 KSLGLVPD 690



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 178/414 (42%), Gaps = 37/414 (8%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           LVPN    T+ ++ +    +K    A      +Q+ GLK D    + LI    + G +D 
Sbjct: 6   LVPNTY--TYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDE 63

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
           +  +   MV+ GI  N+ TY  LI G  K G++ KA      M +   KP+   F  LI 
Sbjct: 64  VLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIE 123

Query: 206 ACGQSGAVDRAFDVLAEM----------------NAEVHPVD-----------------P 232
              +   + RA ++L EM                N   H  D                 P
Sbjct: 124 GYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKP 183

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           + +    L+   A+ G+++ AR +   +    +      Y   I+C S+ G  E A +  
Sbjct: 184 NVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYL 243

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            ++  +G+ PD V   A I      GK+  A +   E  + G+      Y+ L+     A
Sbjct: 244 LEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKA 303

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            N  +AL ++ H+ ++ + P V T +A I  L    ++ + ++V S++K  GL P+  TY
Sbjct: 304 GNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTY 363

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
           S L+    ++ +VE    L  +    G+ PN+ ++  ++ G+C S   ++AR L
Sbjct: 364 SSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKL 417



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 183/425 (43%), Gaps = 41/425 (9%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G+ PN +TY  +  G  +A ++ +A   +  M+   +KPD    +ALI    + G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D    +   M +   P++   IT   L+      G++++A E+ K +     K     +
Sbjct: 61  IDEVLRIKDVMVSCGIPINL--ITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF 118

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
            + I    +  +   A  + D+M K+ ++P  V   A+I+   H   +  A ++L++   
Sbjct: 119 CLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTF 178

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+   ++ YS+L+   ++    ++A  L + M    + P +   NA+I+ L    ++ +
Sbjct: 179 SGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEE 238

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
               L +++  GL P+ +T+   ++   +   +        +  + G++PN  ++  +I 
Sbjct: 239 ASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLI- 297

Query: 453 MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GC 511
                + KA  L E                   AL ++R     G +P V+  S  + G 
Sbjct: 298 ---NGHFKAGNLME-------------------ALSIFRHLHALGVLPDVQTCSAFIHGL 335

Query: 512 LQLPYNADIRERL-----VENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAAS 563
           L+   N  ++E L     ++  G+  D    S   SLI GF   GE + +AF L +E   
Sbjct: 336 LK---NGRVQEALKVFSELKEKGLVPDVFTYS---SLISGFCKQGEVE-KAFELHDEMCL 388

Query: 564 FGIVP 568
            GI P
Sbjct: 389 KGIAP 393


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 126/489 (25%), Positives = 216/489 (44%), Gaps = 29/489 (5%)

Query: 5   GKNMLQFPYP------NGKHANYAH--DVSEQLHSYNRLIRQGRISECIDLLEDMERKGL 56
           G  ML  P P      N   + Y H   + + L S+NR++        +D       K L
Sbjct: 27  GTGMLSIPSPFLSLLHNRFRSKYLHFNTLDDALSSFNRMLHMHPPPSIVDF-----AKIL 81

Query: 57  LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
             + KV   R+  V    + + ++F     +P+  + T N+L++          AF VL 
Sbjct: 82  TSITKV--KRYSTVLSLSRKM-DSFG----IPH-NVYTLNVLINSFCHLNRVNFAFSVLA 133

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
            + + G + D   +TTLI      G++     +F +M+  G +P+V  Y  LI+G  K G
Sbjct: 134 KILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTG 193

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
             + A      M   N +PD VV+  LI +  +     +AF++ +EM  +   + P+ +T
Sbjct: 194 HTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITK--GISPNIVT 251

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +L+ A  N G+      +   +    I       T  ++   + G    A  V D M 
Sbjct: 252 CNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMF 311

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           + GV PD V  +ALID      +++ A ++     ++G +  + SY++L+      +   
Sbjct: 312 QSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMD 371

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           KA+ L+E M   KL P   T N LI  LC   +L   + +  +M + G  P+ +TY ILL
Sbjct: 372 KAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILL 431

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSG 474
               +   ++  + LL   +   + P++ ++  +I GMC +   E AR L  + LS    
Sbjct: 432 DYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSN-LSSKGL 490

Query: 475 RPQIENKWT 483
           +P   N WT
Sbjct: 491 KP---NVWT 496



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/435 (21%), Positives = 179/435 (41%), Gaps = 15/435 (3%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK 85
           S+  LI+    +G+I E + L + M  +G    D V +A   N +CK+      A R  +
Sbjct: 146 SFTTLIKGLCLEGQIGEALHLFDKMIWEGF-QPDVVIYATLINGLCKTGHT-SAAIRLLR 203

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P +  +  L+      +    AF +   +   G+  +     +L+      G
Sbjct: 204 SMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLG 263

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +   +  + +EMV++ I PN  +   ++D   K G VA+A     +M    V+PD V + 
Sbjct: 264 EWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYT 323

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMI 260
           ALI        +D A  V   M   VH    P+  +   L+       ++D+A  +++ +
Sbjct: 324 ALIDGHCLRSEMDEAVKVFDMM---VHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEM 380

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            +  +      Y   I+     G  + A +++ +M   G IPD V    L+D+      +
Sbjct: 381 CRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHL 440

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A  +L+  +   +   I  Y+ ++     A   + A +L+ ++ S  LKP V T N +
Sbjct: 441 DKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIM 500

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
              LC    L +  ++  +M       +  TY+ +     R ++    + LL +    G 
Sbjct: 501 THGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGF 560

Query: 441 IPNLVMFKCIIGMCS 455
             ++     ++GM S
Sbjct: 561 SCDVSTTTLLVGMLS 575



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 151/372 (40%), Gaps = 18/372 (4%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D     F+ M++    P++  +  ++    K  + +        M S  +  +    N 
Sbjct: 55  LDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNV 114

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI +      V+ AF VLA++        PD  +   L+K     GQ+  A  ++  +  
Sbjct: 115 LINSFCHLNRVNFAFSVLAKILKL--GCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIW 172

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              +    +Y   IN   +TG    A  +   M K    PD V    LI       +   
Sbjct: 173 EGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQ 232

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           AF +  E   +GIS  I++ +SL+ A  N   W+    L   M   K+ P   ++  ++ 
Sbjct: 233 AFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVD 292

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           ALC    + +  +V+  M   G+ P+ +TY+ L+     + +++  + +       G  P
Sbjct: 293 ALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAP 352

Query: 443 NLVMFKCII-GMCS-RRYEKARTLNE---------HVLSFNS---GRPQIENKWTSLALM 488
           N+  +  +I G C   R +KA  L E         + +++N+   G   +     ++AL 
Sbjct: 353 NVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIAL- 411

Query: 489 VYREAIVAGTIP 500
            +RE +  G IP
Sbjct: 412 -FREMVACGQIP 422



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/316 (20%), Positives = 132/316 (41%), Gaps = 16/316 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  L+       + + A +V  ++   G   +   Y TLI    K  ++D    +
Sbjct: 317 PDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYL 376

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM    + PN  TY  LI G    G++  A   +  M +    PD V +  L+    +
Sbjct: 377 FEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCK 436

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +D+A  +L  +  E   +DPD      ++     AG+++ AR+++  +    +K   
Sbjct: 437 NCHLDKAMALLKAI--EGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNV 494

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I  +   + G  + A  ++ +M +     D    + +        +   A ++L+E
Sbjct: 495 WTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEE 554

Query: 330 AKNQGISVGIISYSSLMGACS----NAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
              +G S  + + + L+G  S    +     K  +++ H++ I++K TV          C
Sbjct: 555 MLARGFSCDVSTTTLLVGMLSDDGLDQSEAHKLEDMFPHLR-IQVKDTV---------FC 604

Query: 386 DGDQLPKTMEVLSDMK 401
             D +    +V+SD+ 
Sbjct: 605 KEDDINALGKVISDLN 620


>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
          Length = 950

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 161/365 (44%), Gaps = 2/365 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++ ++ +M       D +    V + ++E G       Y  LI    K GK+    EV  
Sbjct: 447 IAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSR 506

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G++ N+ TY  +I+G  K    A AF  +  M  + +KPD +++N +I+A    G
Sbjct: 507 VMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMG 566

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA   + EM    H   P   T   ++   A +G + R+ EV+ M+ +     T   
Sbjct: 567 NMDRAIQTVKEMQKLRH--RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 624

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   IN   +    E A  + D+MT  GV  +E   + ++      G    AFE     +
Sbjct: 625 FNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ 684

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N+G+ V I +Y +L+ AC  +   Q AL + + M +  +       N LI        + 
Sbjct: 685 NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVW 744

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  MK  G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I
Sbjct: 745 EAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLI 804

Query: 452 GMCSR 456
              +R
Sbjct: 805 KGWAR 809



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 151/327 (46%), Gaps = 2/327 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L T++M+++     KD   AF V   + + G+K D  LY  +I+     G +D   +   
Sbjct: 517 LKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVK 576

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM      P   T+  +I G AK+G + ++   + +MR     P    FN LI    +  
Sbjct: 577 EMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKR 636

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +++A ++L EM   +  V  +  T   +M+  A+ G   +A E +  +    +      
Sbjct: 637 QMEKAVEILDEMT--LAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFT 694

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++Q+ K
Sbjct: 695 YEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK 754

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I +Y+S + ACS A +  +A +  E M+++ +KP + T   LI          
Sbjct: 755 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPE 814

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVA 418
           K +    +MK++G+ P+   Y  LL +
Sbjct: 815 KALSCYEEMKAMGIKPDKAVYHCLLTS 841



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 161/348 (46%), Gaps = 2/348 (0%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E A  ++R ++E G+ A   +Y T++              VF  +   G  P V TYG L
Sbjct: 429 ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCL 488

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I+   K G+++KA     +M+ + VK +   ++ +I    +      AF V  +M  E  
Sbjct: 489 INLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE-- 546

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + PD I    ++ A    G +DRA +  K + K   + T   +   I+  +++GD   +
Sbjct: 547 GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRS 606

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             V+D M + G +P     + LI+      ++E A EIL E    G+S    +Y+ +M  
Sbjct: 607 LEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQG 666

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
            ++  +  KA E +  +++  L   + T  AL+ A C   ++   + V  +M +  +  N
Sbjct: 667 YASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 726

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           +  Y+IL+    R+ DV     L+ Q K++GV P++  +   I  CS+
Sbjct: 727 SFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSK 774



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 165/357 (46%), Gaps = 9/357 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N   + G+IS+ +++   M+ +G+    K Y +   N     K    AF  F    K   
Sbjct: 490 NLYTKVGKISKALEVSRVMKEEGVKHNLKTY-SMMINGFVKLKDWANAFAVFEDMVKEGM 548

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N ++S      + + A Q ++ +Q+   +   + +  +I   AKSG +    E
Sbjct: 549 KPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLE 608

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF  M   G  P VHT+  LI+G  +  Q+ KA      M    V  +   +  ++    
Sbjct: 609 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 668

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G   +AF+    +  E   +D D  T  AL+KAC  +G++  A  V K +   NI   
Sbjct: 669 SVGDTGKAFEYFTRLQNE--GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 726

Query: 269 PEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
             VY I I+  ++ GD WE A  +   M K+GV PD    ++ I     AG +  A + +
Sbjct: 727 SFVYNILIDGWARRGDVWE-AADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 785

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +E +  G+   I +Y++L+   + A   +KAL  YE MK++ +KP  +  + L+T+L
Sbjct: 786 EEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 842



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/525 (20%), Positives = 220/525 (41%), Gaps = 64/525 (12%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+ + F +++       D   A +    ++  G+    ++YT+LI   A    +
Sbjct: 299 FEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDM 358

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D       +M   GIE ++ TY  ++ G +KAG    A   +   +  +   +  ++  +
Sbjct: 359 DEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKI 418

Query: 204 ITACGQSGAVDRAFDVLAEMNAE--------VHPV------------------------- 230
           I A  Q+  ++RA  ++ EM  E         H +                         
Sbjct: 419 IYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGF 478

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  +T G L+      G++ +A EV +++ +  +K   + Y++ IN   +  DW  A +
Sbjct: 479 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 538

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++DM K+G+ PD +  + +I      G ++ A + ++E +         ++  ++   +
Sbjct: 539 VFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYA 598

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            + + +++LE+++ M+     PTV T N LI  L +  Q+ K +E+L +M   G+  N  
Sbjct: 599 KSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEH 658

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
           TY+ ++       D        ++ + +G+  ++  ++ ++  C +              
Sbjct: 659 TYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCK-------------- 704

Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENL 528
             SGR Q        AL V +E + A  IP    V  +L         D+ E   L++ +
Sbjct: 705 --SGRMQS-------ALAVTKE-MSARNIPRNSFVYNIL-IDGWARRGDVWEAADLIQQM 753

Query: 529 ---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
              GV  D    ++  S     G+ + RA   +EE  + G+ P +
Sbjct: 754 KKEGVKPDIHTYTSFISACSKAGDMN-RATQTIEEMEALGVKPNI 797



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS   H+Y ++++     G   +  +    ++ +GL D+D   +      C     ++ A
Sbjct: 653 VSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGL-DVDIFTYEALLKACCKSGRMQSA 711

Query: 81  FRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               K      +P  +   +N+L+   A   D   A  +++ +++ G+K D   YT+ I+
Sbjct: 712 LAVTKEMSARNIPRNSF-VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFIS 770

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
            C+K+G ++   +   EM   G++PN+ TY  LI G A+A    KA   Y  M++  +KP
Sbjct: 771 ACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKP 830

Query: 196 DRVVFNALITACGQSGAVDRAF 217
           D+ V++ L+T+     ++  A+
Sbjct: 831 DKAVYHCLLTSLLSRASIAEAY 852



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 36/171 (21%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+++G+                     
Sbjct: 720 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------------------- 758

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   +S C+ + D   A Q +  ++  G+K + K YTTLI   
Sbjct: 759 -----------KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 807

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           A++   +     + EM   GI+P+   Y  L+        +A+A+   G+M
Sbjct: 808 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 858


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 177/373 (47%), Gaps = 21/373 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  + S+N ++    ++G++S+    L DM +K L+     Y+   +  C+    I EA
Sbjct: 338 VSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGN-IGEA 396

Query: 81  F------RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           F      RF  L  N  + T+N L+       D E A ++   +   G+  D   YT L+
Sbjct: 397 FILLDELRFRNLSFN--IVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLV 454

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K G +    E F EM++ G+ P+   Y A I G  K G  AKAF     M +K   
Sbjct: 455 NGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFP 514

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD + +N  +    + G ++ A ++L +M  + H   PDH+T  + M A    G +   R
Sbjct: 515 PDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHV--PDHVTYTSFMHAHMENGHLREGR 572

Query: 255 EV-YKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           E+ Y M+ +     TP V  YT+ I+  +  G  ++A + + +M +KGV+P+ +  + LI
Sbjct: 573 EIFYDMLSR---GQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLI 629

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           +      K++ A +   E + +GI     +Y+ L+    N   WQ+AL LY  M   +++
Sbjct: 630 NGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIR 689

Query: 372 PTVSTMNALITAL 384
           P   T  AL+  L
Sbjct: 690 PDSCTHGALLKKL 702



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 193/437 (44%), Gaps = 18/437 (4%)

Query: 33  NRLIRQGR----ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           NR+++  R    + + +++   M   G+      Y+    + CK      E  R   LVP
Sbjct: 206 NRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKG----GEVQRALDLVP 261

Query: 89  N-------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
                   P+  TFN+L++  +   + + A  +++ + +AGL+     Y  LI    K G
Sbjct: 262 KMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKG 321

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +     ++ EMV  G+ P V ++  ++ G  K G+++ A      M  KN+ PD + +N
Sbjct: 322 LLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYN 381

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    + G +  AF +L E+      +  + +T   L+      G ++ A ++ + + 
Sbjct: 382 TLIYGFCRLGNIGEAFILLDEL--RFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMI 439

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              I      YT+ +N   + G+   A   +D+M   G+ PD+   +A I      G   
Sbjct: 440 NRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTA 499

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            AF++ +E   +G    +I+Y+  +       N ++A EL + M      P   T  + +
Sbjct: 500 KAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFM 559

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            A  +   L +  E+  DM S G  P  +TY++L+ A      ++  +    + +E GV+
Sbjct: 560 HAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVV 619

Query: 442 PNLVMFKCII-GMCSRR 457
           PN++ +  +I G C  R
Sbjct: 620 PNVITYNVLINGFCKVR 636



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 136/343 (39%), Gaps = 40/343 (11%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF +M+     P+V     ++        + KA   Y +M    ++P    +N ++ +  
Sbjct: 189 VFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFC 248

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V RA D++ +M  +     P  +T   L+   +  G++ +A+ + + + K  ++ +
Sbjct: 249 KGGEVQRALDLVPKM--QERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVS 306

Query: 269 PEVY------------------------------------TIAINCCSQTGDWEFACSVY 292
           P  Y                                    TI    C + G    A    
Sbjct: 307 PYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKE-GKMSDARQQL 365

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            DM KK ++PD +  + LI      G +  AF +L E + + +S  I++Y++L+      
Sbjct: 366 SDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRL 425

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            + + AL+L E M +  + P V T   L+   C    +    E   +M  +GL P+   Y
Sbjct: 426 GDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAY 485

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +  +V   +  D      L  +    G  P+++ +   + G+C
Sbjct: 486 TARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLC 528



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 123/309 (39%), Gaps = 11/309 (3%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            ++S  + +YN LI    R G +   + L EDM  +G+      Y       CK    + 
Sbjct: 406 RNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLM 465

Query: 79  EAFRFFKLVPNPTLS--TFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            A  FF  + +  L+   F     +    K  D+  AF++   +   G   D   Y   +
Sbjct: 466 -AKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNVFV 524

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K G ++   E+  +M+  G  P+  TY + +    + G + +    +  M S+   
Sbjct: 525 NGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQT 584

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P  V +  LI A   +G +D A     EM  +   V P+ IT   L+       ++D+A 
Sbjct: 585 PTVVTYTVLIHAHALNGRLDWAMAYFLEMQEK--GVVPNVITYNVLINGFCKVRKMDQAC 642

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           + +  + +  I      YTI IN     G W+ A  +Y  M  K + PD     AL+   
Sbjct: 643 KFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKL 702

Query: 315 GHAGKVEAA 323
               KV+A 
Sbjct: 703 DKDYKVQAV 711



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 41/243 (16%)

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           N+Q  L ++E M   +  P V   N ++  L D + L K +EV   M   G+ P   TY+
Sbjct: 183 NYQ-CLLVFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYN 241

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHV--- 468
            +L +  +  +V+  L L+ + +E G  P+ V F  +I   S++ E  +A+ L + +   
Sbjct: 242 TMLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKA 301

Query: 469 ---LSFNSGRPQI----ENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADI 520
              +S  +  P I    +      AL ++ E +  G  PTV   + ++ G  +    +D 
Sbjct: 302 GLRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDA 361

Query: 521 RERLVENLGVSADALKRS------NLCSLIDGF------GEYDPRAFSLLEEAA----SF 564
           R++L       +D LK++      +  +LI GF      GE    AF LL+E      SF
Sbjct: 362 RQQL-------SDMLKKNLMPDIISYNTLIYGFCRLGNIGE----AFILLDELRFRNLSF 410

Query: 565 GIV 567
            IV
Sbjct: 411 NIV 413


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 206/493 (41%), Gaps = 17/493 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L+  N+ +S    +     A  V   +   G+K DC   + +I    + GK++     
Sbjct: 187 PCLTVMNIFLSELVKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGW 246

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F E  N G+E +   Y  +I+   K      A G    MR K   P  V+F  +I  C +
Sbjct: 247 FREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMK 306

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +  A  V  EM +   P++   +    LMK     G +D A E++  +++  I    
Sbjct: 307 QGKMLEAVKVKGEMLSCGKPMNV--VVATTLMKGYCKQGDLDSALELFDKMNENGICPNN 364

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y + I  C + G+ + A  +Y+ M  K + P    +++LI     A   E A ++  E
Sbjct: 365 VTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDE 424

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
           A   GI+  + +Y+SL+          +A  ++E M    ++P+V + N +I   C    
Sbjct: 425 AVACGIA-NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGD 483

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +     V  +M   GL PN ITYS+L+    +K D E    L  + + + + P+      
Sbjct: 484 MDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNI 543

Query: 450 II-GMC--SRRYEKARTLNEHV--------LSFNSGRPQ-IENKWTSLALMVYREAIVAG 497
           II G+C   R  E    L + V        +++N      ++    + AL VY E    G
Sbjct: 544 IINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIG 603

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAF 555
             P V   + ++       N D+  ++++ +      L  +  C+LIDGF        A 
Sbjct: 604 VSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNAS 663

Query: 556 SLLEEAASFGIVP 568
            LL E    G+ P
Sbjct: 664 QLLSELQEVGLSP 676



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 170/394 (43%), Gaps = 39/394 (9%)

Query: 94  TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           T+N L+S +C   K SE      ++V++ G++     Y  +I    + G +D+   VF E
Sbjct: 435 TYNSLLSWLCKEGKMSEACSIWEKMVRK-GVRPSVVSYNNMILGHCQQGDMDSANGVFVE 493

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+  G++PN+ TY  L+DG  K G    AFG Y  MR +N+ P     N +I    ++G 
Sbjct: 494 MLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGR 553

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              + D L ++  E     P  +T   ++      G V+ A  VY  + K  +      Y
Sbjct: 554 TSESQDRLKKLVQE--GFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTY 611

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  IN   ++ + + A  V D+M  KG+  D     ALID     G +  A ++L E + 
Sbjct: 612 TNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQE 671

Query: 333 QGISVGIISYSSLMGACSNAKNWQKAL--------------------------------- 359
            G+S   + YSS++      +N + AL                                 
Sbjct: 672 VGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLF 731

Query: 360 --ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
             ELY  M +  + P + T + LI  LC+  QL    ++L DM    + P    Y+ L+ 
Sbjct: 732 ASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLIT 791

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              ++ +++    L ++  + G++P+   +  ++
Sbjct: 792 GHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILV 825



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 130/586 (22%), Positives = 240/586 (40%), Gaps = 57/586 (9%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK-----EAFRFFKLVPNP 90
           +R+G++ E      + + KG+    + Y      VCK   ++         R    VP+ 
Sbjct: 235 MREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHE 294

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            +  F  ++ VC        A +V   +   G   +  + TTL+    K G +D+  E+F
Sbjct: 295 VI--FTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELF 352

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI------ 204
            +M   GI PN  TY  +I+ C K G + KA+  Y  M++K++ P     N+LI      
Sbjct: 353 DKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKA 412

Query: 205 -------------TACG---------------QSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
                         ACG               + G +  A  +  +M  +   V P  ++
Sbjct: 413 RSPEEASKLFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRK--GVRPSVVS 470

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              ++      G +D A  V+  + +  +K     Y++ ++   + GD E+A  +YD M 
Sbjct: 471 YNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMR 530

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            + + P +   + +I+    AG+   + + L++   +G     ++Y+ ++       +  
Sbjct: 531 GENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVN 590

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            AL +Y  M  I + P V T   LI   C  + +   ++V+ +MK+ G+  +   Y  L+
Sbjct: 591 SALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALI 650

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 476
               RK D+     LLS+ +E G+ PN V++  +I    +       L+ H    N G P
Sbjct: 651 DGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIP 710

Query: 477 QIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL 524
                +T+L            A  +Y E +  G +P +   S ++  L      +  +++
Sbjct: 711 CDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKI 770

Query: 525 VENLGVSADALKRSNLCSLIDG-FGEYD-PRAFSLLEEAASFGIVP 568
           +E++             +LI G F E +   AF L  E    G+VP
Sbjct: 771 LEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVP 816



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 135/284 (47%), Gaps = 7/284 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N L + GR SE  D L+ + ++G +     Y+       K + ++  A   +    K+  
Sbjct: 546 NGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVK-EGSVNSALAVYTEMCKIGV 604

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+  L++    S + + A +V+  ++  G++ D  +Y  LI    + G +    +
Sbjct: 605 SPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQ 664

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  E+   G+ PN   Y ++I G  K   +  A   +  M ++ +  D  ++  LI+   
Sbjct: 665 LLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLL 724

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  A ++ AEM A+   + PD IT   L+    N GQ++ A+++ + + +  +  T
Sbjct: 725 KEGKLLFASELYAEMLAK--GIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPT 782

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
             +Y   I    + G+ + A  ++++M  KG++PD+     L++
Sbjct: 783 VFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVN 826



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 115/278 (41%), Gaps = 6/278 (2%)

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           R  + + D  VFN L+ +  ++  ++ A D    +  +   + P    +   +       
Sbjct: 146 RRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEK--DIVPCLTVMNIFLSELVKNN 203

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            +  AR+VY  +    +KG     ++ I    + G  E A   + +   KGV  D    S
Sbjct: 204 MIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYS 263

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            +I+         AA  +L+E +++G     + ++ ++G C       +A+++   M S 
Sbjct: 264 IVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSC 323

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
                V     L+   C    L   +E+   M   G+CPN +TY++++  C +  +++  
Sbjct: 324 GKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKA 383

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 466
             + +Q K   + P +     +I    R Y KAR+  E
Sbjct: 384 YEIYNQMKNKDISPTVFNVNSLI----RGYLKARSPEE 417



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/335 (19%), Positives = 132/335 (39%), Gaps = 39/335 (11%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
            E +   +  L++   K  ++  A   +  +  K++ P   V N  ++   ++  +  A 
Sbjct: 150 FESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREAR 209

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
           DV  +M ++   V  D  TI  +++A    G+++ A   ++      ++     Y+I I 
Sbjct: 210 DVYNKMASK--GVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIE 267

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK------------------ 319
              +  D   A  +  +M  KG +P EV  + +I      GK                  
Sbjct: 268 AVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPM 327

Query: 320 -----------------VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
                            +++A E+  +    GI    ++Y+ ++  C    N  KA E+Y
Sbjct: 328 NVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIY 387

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
             MK+  + PTV  +N+LI          +  ++  +  + G+  N  TY+ LL    ++
Sbjct: 388 NQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIA-NVFTYNSLLSWLCKE 446

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMF-KCIIGMCSR 456
             +     +  +    GV P++V +   I+G C +
Sbjct: 447 GKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQ 481



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 44/230 (19%)

Query: 25  VSEQLHSYNRLIRQGRISECIDL----LEDMERKGL-LDMDKVYHARFFNVCKSQKAIKE 79
           VS  + +Y  LI     S  +DL    +++M+ KG+ LD+  VY A     C+    +  
Sbjct: 604 VSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDV-TVYCALIDGFCRKGDMVNA 662

Query: 80  AFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +    +L     +P    ++ ++S     ++ E A  + + +   G+  D ++YTTLI+ 
Sbjct: 663 SQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISG 722

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHT-------------------------------- 164
             K GK+    E++ EM+  GI P++ T                                
Sbjct: 723 LLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPT 782

Query: 165 ---YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
              Y  LI G  K G + +AF  +  M  K + PD   ++ L+    + G
Sbjct: 783 VFIYNTLITGHFKEGNLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDG 832



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 45/89 (50%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T+++L+    +    E A ++L  +    +     +Y TLIT   K G +   F +
Sbjct: 746 PDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQEAFRL 805

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
            +EM++ G+ P+  TY  L++G  K G +
Sbjct: 806 HNEMLDKGLVPDDTTYDILVNGKVKDGNL 834


>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 942

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 160/365 (43%), Gaps = 2/365 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++ ++ +M       D +    V + ++E G       Y  LI    K GK+    EV  
Sbjct: 450 IAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSR 509

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G++ N+ TY  +I+G  K    A AF  +  M  + +KPD +++N +I A    G
Sbjct: 510 VMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMG 569

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA   + EM    H   P   T   ++   A +G + R+ EV+ M+ +     T   
Sbjct: 570 NMDRAIQTVKEMQKLRH--RPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHT 627

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   IN   +    E A  + D+MT  GV  +E   + ++      G    AFE     +
Sbjct: 628 FNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ 687

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N+G+ V I +Y +L+ AC  +   Q AL + + M +  +       N LI        + 
Sbjct: 688 NEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVW 747

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  MK  G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I
Sbjct: 748 EAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLI 807

Query: 452 GMCSR 456
              +R
Sbjct: 808 KGWAR 812



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 153/327 (46%), Gaps = 2/327 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L T++M+++     KD   AF V   + + G+K D  LY  +I      G +D   +   
Sbjct: 520 LKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVK 579

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM      P   T+  +I+G AK+G + ++   + +MR     P    FNALI    +  
Sbjct: 580 EMQKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKR 639

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +++A ++L EM   +  V  +  T   +M+  A+ G   +A E +  +    ++     
Sbjct: 640 QMEKAVEILDEMT--LAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFT 697

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++Q+ K
Sbjct: 698 YEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK 757

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I +Y+S + ACS A +  +A +  E M+++ +KP + T   LI          
Sbjct: 758 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPE 817

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVA 418
           K +    +MK++GL P+   Y  LL +
Sbjct: 818 KALSCYEEMKAVGLKPDKAVYHCLLTS 844



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 163/348 (46%), Gaps = 2/348 (0%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E A  ++R ++E G+ A   +Y T++              VF  +   G  P V TYG L
Sbjct: 432 ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVVTYGCL 491

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I+   K G+++KA     +M+ + VK +   ++ +I    +      AF V  +M  E  
Sbjct: 492 INLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE-- 549

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + PD I    ++ A    G +DRA +  K + K   + T   +   IN  +++GD   +
Sbjct: 550 GMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRS 609

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             V+D M + G +P     +ALI+      ++E A EIL E    G+S    +Y+ +M  
Sbjct: 610 LEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQG 669

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
            ++  +  KA E +  +++  L+  + T  AL+ A C   ++   + V  +M +  +  N
Sbjct: 670 YASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 729

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           +  Y+IL+    R+ DV     L+ Q K++GV P++  +   I  CS+
Sbjct: 730 SFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSK 777



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 166/357 (46%), Gaps = 9/357 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N   + G+IS+ +++   M+ +G+    K Y +   N     K    AF  F    K   
Sbjct: 493 NLYTKVGKISKALEVSRVMKEEGVKHNLKTY-SMMINGFVKLKDWANAFAVFEDMVKEGM 551

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N +++      + + A Q ++ +Q+   +   + +  +I   AKSG +    E
Sbjct: 552 KPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLE 611

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF  M   G  P VHT+ ALI+G  +  Q+ KA      M    V  +   +  ++    
Sbjct: 612 VFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 671

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G   +AF+    +  E   ++ D  T  AL+KAC  +G++  A  V K +   NI   
Sbjct: 672 SVGDTGKAFEYFTRLQNE--GLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 729

Query: 269 PEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
             VY I I+  ++ GD WE A  +   M K+GV PD    ++ I     AG +  A + +
Sbjct: 730 SFVYNILIDGWARRGDVWE-AADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 788

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +E +  G+   I +Y++L+   + A   +KAL  YE MK++ LKP  +  + L+T+L
Sbjct: 789 EEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSL 845



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/525 (20%), Positives = 221/525 (42%), Gaps = 64/525 (12%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+ + F +++       D   A +    ++  G+    ++YT+LI   A    +
Sbjct: 302 FEKINKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDM 361

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +       +M   GIE ++ TY  ++ G +KAG    A   +   +  +   +  ++  +
Sbjct: 362 EEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKI 421

Query: 204 ITACGQSGAVDRAFDVLAEMNAE--------VHPV------------------------- 230
           I A  Q+  ++RA  ++ EM  E         H +                         
Sbjct: 422 IYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGF 481

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  +T G L+      G++ +A EV +++ +  +K   + Y++ IN   +  DW  A +
Sbjct: 482 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 541

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++DM K+G+ PD +  + +I      G ++ A + ++E +         ++  ++   +
Sbjct: 542 VFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFA 601

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            + + +++LE+++ M+     PTV T NALI  L +  Q+ K +E+L +M   G+  N  
Sbjct: 602 KSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEH 661

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
           TY+ ++       D        ++ + +G+  ++  ++ ++  C +              
Sbjct: 662 TYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCK-------------- 707

Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENL 528
             SGR Q        AL V +E + A  IP    V  +L         D+ E   L++ +
Sbjct: 708 --SGRMQS-------ALAVTKE-MSARNIPRNSFVYNIL-IDGWARRGDVWEAADLIQQM 756

Query: 529 ---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
              GV  D    ++  S     G+ + RA   +EE  + G+ P +
Sbjct: 757 KKEGVKPDIHTYTSFISACSKAGDMN-RATQTIEEMEALGVKPNI 800



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 99/202 (49%), Gaps = 11/202 (5%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS   H+Y ++++     G   +  +    ++ +GL      Y A     CKS + ++ A
Sbjct: 656 VSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGR-MQSA 714

Query: 81  FRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               K      +P  +   +N+L+   A   D   A  +++ +++ G+K D   YT+ I+
Sbjct: 715 LAVTKEMSARNIPRNSF-VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFIS 773

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
            C+K+G ++   +   EM   G++PN+ TY  LI G A+A    KA   Y  M++  +KP
Sbjct: 774 ACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKP 833

Query: 196 DRVVFNALITACGQSGAVDRAF 217
           D+ V++ L+T+     ++  A+
Sbjct: 834 DKAVYHCLLTSLLSRASIAEAY 855



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 140/332 (42%), Gaps = 20/332 (6%)

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           + + +    + GD   A   ++ M  +G+ P     ++LI        +E A   +++ K
Sbjct: 313 FGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMEEALSCVRKMK 372

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +GI + +++YS ++G  S A N + A   ++  K I      S    +I A C    + 
Sbjct: 373 EEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTCNME 432

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   ++ +M+  G+      Y  ++       D + GL++  + KE G  P +V + C+I
Sbjct: 433 RAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVVTYGCLI 492

Query: 452 ------GMCSRRYEKARTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAG 497
                 G  S+  E +R + E  +  N        +G  ++++ W + A  V+ + +  G
Sbjct: 493 NLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKD-WAN-AFAVFEDMVKEG 550

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAF 555
             P V + + ++       N D   + V+ +              +I+GF +     R+ 
Sbjct: 551 MKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSL 610

Query: 556 SLLEEAASFGIVPCV-SFKE-IPVVVDARKLE 585
            + +     G VP V +F   I  +V+ R++E
Sbjct: 611 EVFDMMRRCGCVPTVHTFNALINGLVEKRQME 642



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 36/171 (21%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+++G+                     
Sbjct: 723 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------------------- 761

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   +S C+ + D   A Q +  ++  G+K + K YTTLI   
Sbjct: 762 -----------KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 810

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           A++   +     + EM   G++P+   Y  L+        +A+A+   G+M
Sbjct: 811 ARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 861


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 121/495 (24%), Positives = 211/495 (42%), Gaps = 17/495 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT  T   L++ C  S+    AF +L++++    +     YTTLI   ++ G+ D M  +
Sbjct: 24  PTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLAL 83

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F++M   G E NVH    LI   ++ G+V  A      M+S     D V++N  I   G+
Sbjct: 84  FNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGK 143

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G VD A+    EM A  + + PD +T  ++M     A ++D A E+++ + +       
Sbjct: 144 VGKVDMAWKFFHEMKA--NGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCA 201

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I      G ++ A S+ +    KG IP  V  + ++   G  GK + A  I +E
Sbjct: 202 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEE 261

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K   +   + +Y+ ++G    A N + A ++ + MK   L P V T+N +I  LC   +
Sbjct: 262 MKRDAMP-NLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQK 320

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L +   +   M      P+  T+  L+    ++  V+    +  +  +   IPN+V++  
Sbjct: 321 LDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTS 380

Query: 450 IIG---MCSRRYEKARTLNEHVLSFNSGRPQIENKW---------TSLALMVYREAIVAG 497
           +I     C R+ +  +   E + S  S    + N +         T     ++ E    G
Sbjct: 381 LIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARG 440

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAF 555
            +P     S ++  L     A     L   +      L      ++IDGF +     +A+
Sbjct: 441 FLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAY 500

Query: 556 SLLEEAASFGIVPCV 570
            LLEE  + G  P V
Sbjct: 501 QLLEEMKTMGHHPTV 515



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 179/423 (42%), Gaps = 42/423 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           +RL +  ++ E   + E M+ K +   D        +    Q  + +A+R ++ + +   
Sbjct: 313 DRLCKAQKLDEACSIFEGMDYK-VCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQ 371

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +  L+         E   ++ + +  +G   D  L  T +    K+G+ +    
Sbjct: 372 IPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRA 431

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F E+   G  P+  +Y  LI    KAG   + +  Y  M+ +    D   +N +I    
Sbjct: 432 LFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFC 491

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +SG V++A+ +L EM    H   P  +T G+++   A   ++DR  E Y +         
Sbjct: 492 KSGKVNKAYQLLEEMKTMGH--HPTVVTYGSVVDGLA---KIDRLDEAYML--------- 537

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
                                  +++    G+  ++V  S+LID  G  G+V+ A+ +++
Sbjct: 538 -----------------------FEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVME 574

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   +G++  + +++ L+     A+   +AL  ++ MK +K  P   T   LI  LC   
Sbjct: 575 EMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVR 634

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  K      +M+  GL PNTITY+ ++    +  +V     L  + +  G IP+   + 
Sbjct: 635 KFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYN 694

Query: 449 CII 451
            +I
Sbjct: 695 AMI 697



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 149/328 (45%), Gaps = 7/328 (2%)

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           ++   D + ++  EM  AG  P  +T   L+  C K+ ++ +AF    +MR    +P   
Sbjct: 3   RTRNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFS 62

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +  LI A  + G  DR   +  +M    + V+   +T   L++  +  G+VD A  +  
Sbjct: 63  AYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLT--TLIRVFSREGRVDAALSLLD 120

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +          +Y + I+C  + G  + A   + +M   G++PD+V  ++++     A 
Sbjct: 121 EMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKAN 180

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +++ A EI ++ +         +Y++++    +A  + +A  L E  ++    P+V   N
Sbjct: 181 RLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYN 240

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            ++T L    +  K + +  +MK   + PN  TY+I++    +  +VE    +    KE 
Sbjct: 241 CILTCLGKKGKTDKALRIFEEMKRDAM-PNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEA 299

Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTLNE 466
           G+ PN+     +I     R  KA+ L+E
Sbjct: 300 GLFPNVRTINIMID----RLCKAQKLDE 323



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 180/419 (42%), Gaps = 29/419 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA--------RFFNVCKSQKAIKEAFRFFKL 86
           L +QGR+ +   + E M     LD D++ +          FF   + +   K      + 
Sbjct: 350 LGKQGRVDDAYRIYERM-----LDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRS 404

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             +P L   N  M     + ++E    +   ++  G   D + Y+ LI +  K+G     
Sbjct: 405 GCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARET 464

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           +E+++ M + G   +   Y  +IDG  K+G+V KA+     M++    P  V + +++  
Sbjct: 465 YELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDG 524

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   +D A+ +  E  A+ + ++ + +   +L+      G+VD   E Y ++ +   K
Sbjct: 525 LAKIDRLDEAYMLFEE--AKSNGIELNQVIYSSLIDGFGKVGRVD---EAYLVMEEMMQK 579

Query: 267 G-TPEVYTIAINCC----SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           G TP VYT   NC      +  +   A   +  M      P+++    LI+      K  
Sbjct: 580 GLTPNVYTW--NCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFN 637

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            AF   QE + QG+    I+Y++++   + + N  +A  L+E  ++    P  ++ NA+I
Sbjct: 638 KAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDSASYNAMI 697

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE----VGLMLLSQAK 436
             L   ++     ++  + +  G   +T T   LL A  + + +E    VG +L   AK
Sbjct: 698 EGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQAAIVGAVLRETAK 756



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/348 (19%), Positives = 143/348 (41%), Gaps = 13/348 (3%)

Query: 215 RAFDVLAEMNAE--VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           R FD L ++  E  +    P + T   L+ +C  + ++  A ++ +M+  +  +     Y
Sbjct: 5   RNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAY 64

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  I   S+ G+ +   ++++ M + G   +   L+ LI      G+V+AA  +L E K+
Sbjct: 65  TTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKS 124

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
                 I+ Y+  +           A + +  MK+  L P   T  +++  LC  ++L +
Sbjct: 125 NTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDE 184

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            +E+   M+     P    Y+ +++        +    LL + +  G IP++V + CI+ 
Sbjct: 185 AVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILT 244

Query: 453 MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV----------YREAIV-AGTIPT 501
              ++ +  + L           P +      + ++            R+A+  AG  P 
Sbjct: 245 CLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPN 304

Query: 502 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 549
           V  ++ ++  L      D    + E +     +   +  CSLIDG G+
Sbjct: 305 VRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGK 352



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/333 (20%), Positives = 135/333 (40%), Gaps = 41/333 (12%)

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           +T ++++   +  +M+  G  P       L+     + K+  AF++LQ  ++        
Sbjct: 3   RTRNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFS 62

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +Y++L+GA S      + L L+  M+ +  +  V  +  LI       ++   + +L +M
Sbjct: 63  AYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEM 122

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 460
           KS     + + Y++ +    +   V++      + K +G++P+ V +  ++G+      K
Sbjct: 123 KSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLC----K 178

Query: 461 ARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA--------------------GTIP 500
           A  L+E V  F     Q+E          Y   I+                     G IP
Sbjct: 179 ANRLDEAVEIFE----QMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIP 234

Query: 501 TVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF----GEYDPRAFS 556
           +V   + +L CL      D   R+ E +    DA+      ++I G     G  +  AF 
Sbjct: 235 SVVAYNCILTCLGKKGKTDKALRIFEEM--KRDAMPNLPTYNIIIGMLCKAGNVEA-AFK 291

Query: 557 LLEEAASFGIVPCVSFKEIPVVVD----ARKLE 585
           + +     G+ P V  + I +++D    A+KL+
Sbjct: 292 VRDAMKEAGLFPNV--RTINIMIDRLCKAQKLD 322


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 166/354 (46%), Gaps = 2/354 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+         + A QVL  + + G+  D   Y+ L+    ++G+ ++   +
Sbjct: 157 PRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARIL 216

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G++P+ + +  ++ G    G+  KAF     M +  V+PDR  +N +I   G+
Sbjct: 217 LKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGK 276

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +  A D    M  E   ++PD +T   L+ A    G+ DRA E++  + + N     
Sbjct: 277 YNCLGHAMDAFDRMREE--GIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGT 334

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN   +   WE   ++  +M ++G++P+ +  + L+D  G +G+ + A + ++ 
Sbjct: 335 TTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEA 394

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G+      Y +L+ A +       AL + + M++  L+ +   +N+LI A  +  +
Sbjct: 395 MKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRR 454

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           + +   VL  MK  GL P+ ITY+ L+ A  R +  E   ++  +    G  P+
Sbjct: 455 IAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPD 508



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 161/347 (46%), Gaps = 3/347 (0%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           E+ L+ D  L++ LI+  A++   DA  E+       G+ P  +   ALI     A +VA
Sbjct: 81  ESRLEPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVA 140

Query: 180 KAFGAY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
           +A   +     +  +KP    +NAL+    + G++  A  VL EM+     V PD  T  
Sbjct: 141 EAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQ--CGVAPDEATYS 198

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+ A   AG+ + AR + K +    +K +  V++  +      G+W+ A +V  +M   
Sbjct: 199 LLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHAS 258

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV PD  F + +ID  G    +  A +     + +GI   ++++++L+ A        +A
Sbjct: 259 GVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRA 318

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           +EL++ M+        +T N +I  L +  +      +L++MK  GL PN ITY+ L+  
Sbjct: 319 IELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDV 378

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
             R    +  +  +   K DG+ P+  M+  ++   ++R      LN
Sbjct: 379 YGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALN 425



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 179/431 (41%), Gaps = 21/431 (4%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +L P+  L  F+ L+S  A ++  + A ++L   Q  GL       T LI++   + +V 
Sbjct: 83  RLEPDAPL--FSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVA 140

Query: 145 AMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
               +F E   AG I+P    Y AL+ G  K G +  A      M    V PD   ++ L
Sbjct: 141 EAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLL 200

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           + A  ++G  + A  +L EM A+   V P       ++    + G+  +A  V + +H  
Sbjct: 201 VDAYTRAGRWESARILLKEMEAD--GVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHAS 258

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            ++     Y + I+   +      A   +D M ++G+ PD V  + LID     G+ + A
Sbjct: 259 GVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRA 318

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E+  E +     +G  +Y+ ++      + W+    +   MK   L P + T   L+  
Sbjct: 319 IELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDV 378

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
                +  + ++ +  MK+ GL P++  Y  L+ A  ++   +  L ++   + DG+  +
Sbjct: 379 YGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEAS 438

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSF---NSGRPQIENKWTSLALM-----------V 489
            V+   +I         A   +  VL F   N  RP +    T +  +           +
Sbjct: 439 TVVLNSLINAFGEDRRIAEAFS--VLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVI 496

Query: 490 YREAIVAGTIP 500
           Y E I +G  P
Sbjct: 497 YEEMITSGCAP 507



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 134/295 (45%), Gaps = 2/295 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+   F+ +++      + + AF VLR +  +G++ D   Y  +I T  K   +    + 
Sbjct: 227 PSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 286

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M   GIEP+V T+  LID   K G+  +A   +  MR  N       +N +I   G+
Sbjct: 287 FDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGE 346

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
               +    +LAEM  +   + P+ IT   L+     +G+   A +  + +    +K + 
Sbjct: 347 EQRWEGVEAMLAEMKEQ--GLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSS 404

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +Y   +N  +Q G  + A +V   M   G+    V L++LI+  G   ++  AF +LQ 
Sbjct: 405 TMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQF 464

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            K  G+   +I+Y++LM A    + ++K   +YE M +    P       L +AL
Sbjct: 465 MKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSAL 519


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 176/395 (44%), Gaps = 46/395 (11%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI    ++G   E  DL+E+M  +        Y+   + +CK  +      RF  
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSD 345

Query: 86  LVPN---PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++ +   P + +FN +L   C +   SE AF +   ++   L      Y TLI      G
Sbjct: 346 MLKSKFTPDIVSFNSLLYGYCRTGCISE-AFLLFDELKCRDLVPTVITYNTLIHGLCMWG 404

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +DA   +  EM + G+ P++ TY  L++GC K G V+ A G +  M SK +KPDR  +N
Sbjct: 405 YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYN 464

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
             I    +      AF +  EM A   P  PD IT                         
Sbjct: 465 TRIVGEMKIADTSVAFSMQEEMLAAGFP--PDVIT------------------------- 497

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                     Y + ++   Q G++E AC + ++M   G+IPD V  +++I+     G + 
Sbjct: 498 ----------YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLR 547

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E+  E  ++G++  +++Y+ L+ A +  +    A   +  M    +   V T NA+I
Sbjct: 548 KAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAII 607

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
             LC   ++ +  +   +M+  G+ PN  +Y+IL+
Sbjct: 608 NGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILI 642



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 210/479 (43%), Gaps = 47/479 (9%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           VS ++H    ++  G +  C+ + + M R GLL  D     R   V + +  + +A   +
Sbjct: 146 VSFEMHGVVDVLIAGHVX-CLLVFDKMIRNGLLP-DVKNCNRILRVLRDENLLSKAKNVY 203

Query: 85  KLVPN----PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            ++      PT+ T+N ML S C   +  + A ++L  +QE G   +   Y  L+   +K
Sbjct: 204 GMMEQFGIKPTVVTYNTMLDSYCKEGRVDQ-ALELLSEMQERGCYPNDVTYNVLVNGLSK 262

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG---------------- 183
            G+++    +  EM+N+G+  + +TY  LI+G  + G   +AF                 
Sbjct: 263 KGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLST 322

Query: 184 ----AYGI---------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
                YG+               M      PD V FN+L+    ++G +  AF +  E+ 
Sbjct: 323 YNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDEL- 381

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
            +   + P  IT   L+      G +D A  + K +    +      YTI +N C + G 
Sbjct: 382 -KCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGY 440

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
              A   +++M  KG+ PD    +  I           AF + +E    G    +I+Y+ 
Sbjct: 441 VSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNV 500

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
            + A     N+++A +L E+M S  L P   T  ++I        L K  EV ++M S G
Sbjct: 501 FVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKG 560

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA 461
           + P+ +TY++L+ A   K  +++  M  S+  E  V  N++ +  II G+C +RR ++A
Sbjct: 561 VAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEA 619



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 179/428 (41%), Gaps = 35/428 (8%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF +M+  G+ P+V     ++        ++KA   YG+M    +KP  V +N ++ +  
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G VD+A ++L+EM  +     P+ +T   L+   +  G++++A+ + + +    +  +
Sbjct: 227 KEGRVDQALELLSEM--QERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS 284

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVEAAF 324
              Y   IN   Q G +  A  + ++M  +   P        +  L  +    G V   F
Sbjct: 285 AYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTG-VRLRF 343

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
             + ++K    +  I+S++SL+          +A  L++ +K   L PTV T N LI  L
Sbjct: 344 SDMLKSK---FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGL 400

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C    L   + +  +M   GL P+  TY+IL+  C +   V +     ++    G+ P+ 
Sbjct: 401 CMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDR 460

Query: 445 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
             +   I                      G  +I +  TS+A  +  E + AG  P V  
Sbjct: 461 FAYNTRI---------------------VGEMKIAD--TSVAFSMQEEMLAAGFPPDVIT 497

Query: 505 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE--YDPRAFSLLEEAA 562
            +  +  L    N +    L+EN+             S+I+GF +  +  +A  +  E  
Sbjct: 498 YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEML 557

Query: 563 SFGIVPCV 570
           S G+ P V
Sbjct: 558 SKGVAPSV 565



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 5/166 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +QG   E  DLLE+M   GL+  D V +    N       +++A   F  + +    P
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIP-DHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAP 563

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++ T+ +L+   A+ +  + AF     + E  + A+   Y  +I     + ++D  ++ F
Sbjct: 564 SVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYF 623

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
            EM   GI PN  +Y  LI+     G   +A   Y  M  + ++PD
Sbjct: 624 DEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPD 669



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           L +++ M    L P V   N ++  L D + L K   V   M+  G+ P  +TY+ +L +
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSG 474
             ++  V+  L LLS+ +E G  PN V +  ++   S++   E+A+ L E +L  NSG
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEML--NSG 280


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 167/340 (49%), Gaps = 3/340 (0%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           L +    K   +LY  +I    +S  +D+    F+EMV+ G  P  + +  L+     + 
Sbjct: 84  LTESETSKTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSS 143

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
              + +  +   + K V  D   F  +I  C ++G ++++FD+L E+        P+ + 
Sbjct: 144 SFNQWWCFFNESKIK-VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELRE--FGFSPNVVI 200

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              L+  C   G++++A++++  + K+ +      YT+ I+   + G  +    +Y+ M 
Sbjct: 201 YTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQ 260

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           + GV P+    + +++     G+ + AF++  E + +G+S  I++Y++L+G         
Sbjct: 261 EHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKAN 320

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A E+ + MKS  + P + T N LI   C   +L K + +  D+KS GL P+ +TY+IL+
Sbjct: 321 EANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILV 380

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
               +K D      ++ + +E G+ P+ V +  +I   +R
Sbjct: 381 SGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFAR 420



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 162/368 (44%), Gaps = 3/368 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +F +++  C  + + E +F +L  ++E G   +  +YTTLI  C K G+++   ++F EM
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G+  N  TY  LI G  K G   + F  Y  M+   V P+   +N ++    + G  
Sbjct: 225 GKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRT 284

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             AF V  EM      V  + +T   L+       + + A EV   +    I      Y 
Sbjct: 285 KDAFKVFDEMRE--RGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYN 342

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+          A S+  D+  +G+ P  V  + L+      G    A ++++E + +
Sbjct: 343 TLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEER 402

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI    ++Y+ L+   + + N +KA++L   M+ + L P V T + LI   C   ++ + 
Sbjct: 403 GIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEA 462

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG- 452
             +   M      PN + Y+ +++   ++      L L  + +E  + PN+  ++ +I  
Sbjct: 463 SRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEV 522

Query: 453 MCSRRYEK 460
           +C  R  K
Sbjct: 523 LCKERKSK 530



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 166/396 (41%), Gaps = 53/396 (13%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVY----HARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           ++G I +  DL  +M + GL+  +  Y    H  F N  K     K+ F  ++ +     
Sbjct: 210 KKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIK-----KQGFEMYEKMQEHGV 264

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+N +M+       ++ AF+V   ++E G+  +   Y TLI    +  K +   E
Sbjct: 265 FPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANE 324

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  +M + GI PN+ TY  LIDG     ++ KA      ++S+ + P  V +N L++   
Sbjct: 325 VMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFC 384

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G    A  V+ EM  E   + P  +T   L+   A +  +++A ++   + +  +   
Sbjct: 385 KKGDTSGAGKVVKEM--EERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPD 442

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y++ I+     G    A  ++  M +K   P+EV  + ++                 
Sbjct: 443 VHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMV----------------- 485

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
                            +G C    ++ +AL L+  M+  +L P V++   +I  LC   
Sbjct: 486 -----------------LGYCKEGSSY-RALRLFREMEEKELPPNVASYRYMIEVLCKER 527

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           +  +   ++  M   G+ P+    SIL +    K+D
Sbjct: 528 KSKEAEGLVEKMIDSGIGPSD---SILNLISRAKND 560



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 108/249 (43%), Gaps = 42/249 (16%)

Query: 23  HDVSEQLHSYN----RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-- 76
           H V   LH+YN    +L + GR  +   + ++M  +G+      Y+     +C+  KA  
Sbjct: 262 HGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANE 321

Query: 77  ---IKEAFRFFKLVPN---------------------------------PTLSTFNMLMS 100
              + +  +   + PN                                 P+L T+N+L+S
Sbjct: 322 ANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVS 381

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
                 D+ GA +V++ ++E G+K     YT LI T A+S  ++   ++   M   G+ P
Sbjct: 382 GFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTP 441

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           +VHTY  LI G    G++ +A   +  M  K  +P+ V++N ++    + G+  RA  + 
Sbjct: 442 DVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLF 501

Query: 221 AEMNAEVHP 229
            EM  +  P
Sbjct: 502 REMEEKELP 510



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 9/193 (4%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---Q 74
           +  +S  L +YN L+    ++G  S    ++++ME +G+      Y        +S   +
Sbjct: 366 SRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNME 425

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           KAI+      +L   P + T+++L+   C   + +E + ++ + + E   + +  +Y T+
Sbjct: 426 KAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEAS-RLFKSMVEKKFEPNEVIYNTM 484

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    K G       +F EM    + PNV +Y  +I+   K  +  +A G    M    +
Sbjct: 485 VLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGI 544

Query: 194 KPDRVVFNALITA 206
            P   + N +  A
Sbjct: 545 GPSDSILNLISRA 557


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 117/406 (28%), Positives = 197/406 (48%), Gaps = 18/406 (4%)

Query: 73  SQKAIKEAF--RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           SQ  +  +F  +  KL   P + TF  L++        E A  ++  + E G+K D  +Y
Sbjct: 120 SQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIY 179

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           TT+I +  K+G VD    +F++M N GI P+V  Y +L++G   +G+   A      M  
Sbjct: 180 TTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMK 239

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           + +KPD + FNALI A  + G +  A ++  EM      + P+  T  +L+      G++
Sbjct: 240 RKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQ--MSIAPNIFTYTSLINGLCMEGRL 297

Query: 251 DRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           D AR+++ ++     KG  P+V  YT  IN   +    E A  ++ +M++KG+  + +  
Sbjct: 298 DEARQMFYLMET---KGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITY 354

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMK 366
           + LI   G  GK   A E+     ++G+   I +Y+ L+   C N K   KAL ++E M+
Sbjct: 355 TTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGK-VNKALMIFEDMQ 413

Query: 367 SIKLK---PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
             ++    P + T N L+  LC   +L K + V  DM+   +    ITY+I++    +  
Sbjct: 414 KREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAG 473

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 469
            V+  L L       GV PN+V +  +I   S  + +   L  HVL
Sbjct: 474 KVKDALNLFCSLPSKGVKPNVVTYTTMI---SGLFREGLMLEAHVL 516



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 186/419 (44%), Gaps = 16/419 (3%)

Query: 31  SYNRLIRQG----RISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +Y  ++R G    + +E +DL   M E + L  +  +   R  NV    K         K
Sbjct: 38  NYREILRNGLHSLQFNEALDLFSHMVESRPLPSI--IDFTRLLNVIAKMKKFDVVINLCK 95

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +     +  L T N+LM+    S     A   L  + + G + D   +T+LI       
Sbjct: 96  HLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGN 155

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +++    + ++MV  GI+P+V  Y  +ID   K G V  A   +  M +  ++PD V++ 
Sbjct: 156 RIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYT 215

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +L+     SG    A  +L  M      + PD IT  AL+ A    G++  A+E+Y  + 
Sbjct: 216 SLVNGLCNSGRWRDADLLLRGMMKR--KIKPDVITFNALIDAFVKEGKLLDAKELYNEMI 273

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           + +I      YT  IN     G  + A  ++  M  KG  PD V  ++LI+      KVE
Sbjct: 274 QMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVE 333

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A +I  E   +G++   I+Y++L+           A E++ HM S  + P + T N L+
Sbjct: 334 DAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLL 393

Query: 382 TALCDGDQLPKTMEVLSDMKSL---GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LC   ++ K + +  DM+     G+ PN  TY++LL        +E  LM+    ++
Sbjct: 394 HCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQK 452



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 138/322 (42%), Gaps = 2/322 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +T L+   AK  K D +  +   +   G+  +++T   L++   ++ Q   A    G + 
Sbjct: 74  FTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLM 133

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               +PD   F +LI        ++ A  ++ +M  E+  + PD +    ++ +    G 
Sbjct: 134 KLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQM-VEM-GIKPDVVIYTTIIDSLCKNGH 191

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           VD A  ++  +  Y I+    +YT  +N    +G W  A  +   M K+ + PD +  +A
Sbjct: 192 VDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNA 251

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LID     GK+  A E+  E     I+  I +Y+SL+          +A +++  M++  
Sbjct: 252 LIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKG 311

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P V    +LI   C   ++   M++  +M   GL  NTITY+ L+          V  
Sbjct: 312 CFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQ 371

Query: 430 MLLSQAKEDGVIPNLVMFKCII 451
            +       GV PN+  +  ++
Sbjct: 372 EVFGHMVSRGVPPNIRTYNVLL 393



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 3/249 (1%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+  L++ +C   +  E A Q+  L++  G   D   YT+LI    K  KV+   +
Sbjct: 279 PNIFTYTSLINGLCMEGRLDE-ARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMK 337

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F+EM   G+  N  TY  LI G    G+   A   +G M S+ V P+   +N L+    
Sbjct: 338 IFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLC 397

Query: 209 QSGAVDRAFDVLAEMNA-EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +G V++A  +  +M   E+  V P+  T   L+      G++++A  V+  + K ++  
Sbjct: 398 YNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDI 457

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YTI I    + G  + A +++  +  KGV P+ V  + +I      G +  A  + 
Sbjct: 458 GIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLF 517

Query: 328 QEAKNQGIS 336
           ++ K  G+S
Sbjct: 518 RKMKEDGVS 526


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 170/367 (46%), Gaps = 3/367 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L+S        + A  +L  +++ G++   K+YT L+    K   V     +
Sbjct: 224 PDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGL 283

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM +    P+V TY  LI G  KAG++ +A+  +  MR +  +PD V+ N +I   G+
Sbjct: 284 FEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGK 343

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC-ANAGQVDRAREVYKMIHKYNIKGT 268
           +G +D A  +  EM  E     P  +T   ++KA   +  +V      ++ +    I  +
Sbjct: 344 AGRLDDAIKLFEEM--ETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPS 401

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P  Y+I I+   +T   E A  + ++M +KG  P      +LID  G A + + A E+ Q
Sbjct: 402 PFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQ 461

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E K    S     Y+ ++     A     A++L++ M  +   P V   NAL++ L    
Sbjct: 462 ELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAG 521

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L + +  +  M+  G  P+  +Y+I+L A  +    +  + +L   K+  + P+ V + 
Sbjct: 522 MLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYN 581

Query: 449 CIIGMCS 455
            ++G  S
Sbjct: 582 TVLGALS 588



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 182/438 (41%), Gaps = 46/438 (10%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFF 84
           H+YN +I     +G   +  +L  +M  +G    D V Y A     CK  +     +   
Sbjct: 191 HAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLN 250

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++  N   PT   + MLM++     +  GA  +   ++    + D   YT LI    K+G
Sbjct: 251 EMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAG 310

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++D  +  FHEM   G  P+      +I+   KAG++  A   +  M +    P  V +N
Sbjct: 311 RLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYN 370

Query: 202 ALITACGQSGA------------------------------------VDRAFDVLAEMNA 225
            +I A  +S +                                     ++A  +L EM+ 
Sbjct: 371 TIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDE 430

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
           +  P  P      +L+ A   A + D A E+++ + +     +  VY + I    + G  
Sbjct: 431 KGFP--PCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRL 488

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A  ++D+M + G  P+    +AL+     AG ++ A   ++  ++ G    I SY+ +
Sbjct: 489 DDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNII 548

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           + A +      +A+ +  +MK   +KP   + N ++ AL       +  +++ +M ++G 
Sbjct: 549 LNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGF 608

Query: 406 CPNTITYSILLVACERKD 423
             + ITYS +L A  + D
Sbjct: 609 DYDLITYSSILEAIGKVD 626



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 178/414 (42%), Gaps = 24/414 (5%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-----LST 94
           RI +      D E+   + M KV H     V K+   +    +FF+            ST
Sbjct: 62  RILKIFKWGPDAEKALEVLMMKVDHWLVREVMKTDVGVSVKMQFFRWAARKRNYEHDTST 121

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL----YTTLITTCAKSGKVDAMFEVF 150
           + M +  C    +  G  ++ +++QE      C +     + +I     +  +     +F
Sbjct: 122 Y-MALIRCLEVVEQYG--EMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIF 178

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQ 209
           +++     +P  H Y ++I      G+  K    Y  M ++    PD V ++ALI+A  +
Sbjct: 179 YQIKARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCK 238

Query: 210 SGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANA-GQVDRAREVYKMIHKYNIKG 267
            G  D A  +L EM    + P    +  + AL+    N  G +    E   M H+Y    
Sbjct: 239 LGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEE---MRHQY---C 292

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P+V  YT  I    + G  + A + + +M ++G  PD V ++ +I+F G AG+++ A +
Sbjct: 293 RPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIK 352

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL-ELYEHMKSIKLKPTVSTMNALITAL 384
           + +E +       +++Y++++ A   +K+    +   +E MK   + P+  T + LI   
Sbjct: 353 LFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGF 412

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           C  ++  K M +L +M   G  P    Y  L+ A  +    ++   L  + KE+
Sbjct: 413 CKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKEN 466



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 150/374 (40%), Gaps = 35/374 (9%)

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
           AE   EV  +  DH  +  +MK   + G   + +       K N +     Y   I C  
Sbjct: 73  AEKALEVLMMKVDHWLVREVMKT--DVGVSVKMQFFRWAARKRNYEHDTSTYMALIRCLE 130

Query: 281 QTGDWEFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
               +     +  +M +  V +   + LS +I   G+A  +  A  I  + K +      
Sbjct: 131 VVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTA 190

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLS 398
            +Y+S++    +   ++K  ELY  M +  +  P   T +ALI+A C   +    + +L+
Sbjct: 191 HAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLN 250

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 458
           +MK  G+ P    Y++L+    + D+V   L L  + +     P++  +  +I    R  
Sbjct: 251 EMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELI----RGL 306

Query: 459 EKARTLNE-----HVLSFNSGRPQ---IENKWTSL--------ALMVYREAIVAGTIPTV 502
            KA  L+E     H +     RP    + N    L        A+ ++ E      IP+V
Sbjct: 307 GKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSV 366

Query: 503 EVVSKVLGCL-----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAF 555
              + ++  L     ++   +   ER+ +  G+S      S    LIDGF + +   +A 
Sbjct: 367 VTYNTIIKALFESKSRVSEISSWFERM-KGSGISPSPFTYS---ILIDGFCKTNRTEKAM 422

Query: 556 SLLEEAASFGIVPC 569
            LLEE    G  PC
Sbjct: 423 MLLEEMDEKGFPPC 436


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 176/395 (44%), Gaps = 46/395 (11%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI    ++G   E  DL+E+M  +        Y+   + +CK  +      RF  
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSD 345

Query: 86  LVPN---PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++ +   P + +FN +L   C +   SE AF +   ++   L      Y TLI      G
Sbjct: 346 MLKSKFTPDIVSFNSLLYGYCRTGCISE-AFLLFDELKCRDLVPTVITYNTLIHGLCMWG 404

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +DA   +  EM + G+ P++ TY  L++GC K G V+ A G +  M SK +KPDR  +N
Sbjct: 405 YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYN 464

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
             I    +      AF +  EM A   P  PD IT                         
Sbjct: 465 TRIVGEMKIADTSVAFSMQEEMLAAGFP--PDVIT------------------------- 497

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                     Y + ++   Q G++E AC + ++M   G+IPD V  +++I+     G + 
Sbjct: 498 ----------YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLR 547

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E+  E  ++G++  +++Y+ L+ A +  +    A   +  M    +   V T NA+I
Sbjct: 548 KAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAII 607

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
             LC   ++ +  +   +M+  G+ PN  +Y+IL+
Sbjct: 608 NGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILI 642



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 210/479 (43%), Gaps = 47/479 (9%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           VS ++H    ++  G +  C+ + + M R GLL  D     R   V + +  + +A   +
Sbjct: 146 VSFEMHGVVDVLIAGHVX-CLLVFDKMIRNGLLP-DVKNCNRILRVLRDENLLSKAKNVY 203

Query: 85  KLVPN----PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            ++      PT+ T+N ML S C   +  + A ++L  +QE G   +   Y  L+   +K
Sbjct: 204 GMMEQFGIKPTVVTYNTMLDSYCKEGRVDQ-ALELLSEMQERGCYPNDVTYNVLVNGLSK 262

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG---------------- 183
            G+++    +  EM+N+G+  + +TY  LI+G  + G   +AF                 
Sbjct: 263 KGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLST 322

Query: 184 ----AYGI---------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
                YG+               M      PD V FN+L+    ++G +  AF +  E+ 
Sbjct: 323 YNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDEL- 381

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
            +   + P  IT   L+      G +D A  + K +    +      YTI +N C + G 
Sbjct: 382 -KCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGY 440

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
              A   +++M  KG+ PD    +  I           AF + +E    G    +I+Y+ 
Sbjct: 441 VSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNV 500

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
            + A     N+++A +L E+M S  L P   T  ++I        L K  EV ++M S G
Sbjct: 501 FVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKG 560

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA 461
           + P+ +TY++L+ A   K  +++  M  S+  E  V  N++ +  II G+C +RR ++A
Sbjct: 561 VAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEA 619



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/428 (22%), Positives = 178/428 (41%), Gaps = 35/428 (8%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF +M+  G+ P+V     ++        ++KA   YG+M    +KP  V +N ++ +  
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G VD+A ++L+EM        P+ +T   L+   +  G++++A+ + + +    +  +
Sbjct: 227 KEGRVDQALELLSEMQER--GCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVS 284

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVEAAF 324
              Y   IN   Q G +  A  + ++M  +   P        +  L  +    G V   F
Sbjct: 285 AYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTG-VRLRF 343

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
             + ++K    +  I+S++SL+          +A  L++ +K   L PTV T N LI  L
Sbjct: 344 SDMLKSK---FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGL 400

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C    L   + +  +M   GL P+  TY+IL+  C +   V +     ++    G+ P+ 
Sbjct: 401 CMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDR 460

Query: 445 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
             +   I                      G  +I +  TS+A  +  E + AG  P V  
Sbjct: 461 FAYNTRI---------------------VGEMKIAD--TSVAFSMQEEMLAAGFPPDVIT 497

Query: 505 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE--YDPRAFSLLEEAA 562
            +  +  L    N +    L+EN+             S+I+GF +  +  +A  +  E  
Sbjct: 498 YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEML 557

Query: 563 SFGIVPCV 570
           S G+ P V
Sbjct: 558 SKGVAPSV 565



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 75/166 (45%), Gaps = 5/166 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +QG   E  DLLE+M   GL+  D V +    N       +++A   F  + +    P
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIP-DHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAP 563

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++ T+ +L+   A+ +  + AF     + E  + A+   Y  +I     + ++D  ++ F
Sbjct: 564 SVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYF 623

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
            EM   GI PN  +Y  LI+     G   +A   Y  M  + ++PD
Sbjct: 624 DEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPD 669



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           L +++ M    L P V   N ++  L D + L K   V   M+  G+ P  +TY+ +L +
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSG 474
             ++  V+  L LLS+ +E G  PN V +  ++   S++   E+A+ L E +L  NSG
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEML--NSG 280


>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g04810, chloroplastic; AltName: Full=Maize PPR4
           homolog; Short=AtPPR4; Flags: Precursor
 gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
 gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 952

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 161/365 (44%), Gaps = 2/365 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++ ++ +M       D +    V + ++E G       Y  LI    K GK+    EV  
Sbjct: 449 IAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSR 508

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G++ N+ TY  +I+G  K    A AF  +  M  + +KPD +++N +I+A    G
Sbjct: 509 VMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMG 568

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA   + EM    H   P   T   ++   A +G + R+ EV+ M+ +     T   
Sbjct: 569 NMDRAIQTVKEMQKLRH--RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 626

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   IN   +    E A  + D+MT  GV  +E   + ++      G    AFE     +
Sbjct: 627 FNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ 686

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N+G+ V I +Y +L+ AC  +   Q AL + + M +  +       N LI        + 
Sbjct: 687 NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVW 746

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  MK  G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I
Sbjct: 747 EAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLI 806

Query: 452 GMCSR 456
              +R
Sbjct: 807 KGWAR 811



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 151/327 (46%), Gaps = 2/327 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L T++M+++     KD   AF V   + + G+K D  LY  +I+     G +D   +   
Sbjct: 519 LKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVK 578

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM      P   T+  +I G AK+G + ++   + +MR     P    FN LI    +  
Sbjct: 579 EMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKR 638

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +++A ++L EM   +  V  +  T   +M+  A+ G   +A E +  +    +      
Sbjct: 639 QMEKAVEILDEMT--LAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFT 696

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++Q+ K
Sbjct: 697 YEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK 756

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I +Y+S + ACS A +  +A +  E M+++ +KP + T   LI          
Sbjct: 757 KEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPE 816

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVA 418
           K +    +MK++G+ P+   Y  LL +
Sbjct: 817 KALSCYEEMKAMGIKPDKAVYHCLLTS 843



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 161/348 (46%), Gaps = 2/348 (0%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E A  ++R ++E G+ A   +Y T++              VF  +   G  P V TYG L
Sbjct: 431 ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCL 490

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I+   K G+++KA     +M+ + VK +   ++ +I    +      AF V  +M  E  
Sbjct: 491 INLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE-- 548

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + PD I    ++ A    G +DRA +  K + K   + T   +   I+  +++GD   +
Sbjct: 549 GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRS 608

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             V+D M + G +P     + LI+      ++E A EIL E    G+S    +Y+ +M  
Sbjct: 609 LEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQG 668

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
            ++  +  KA E +  +++  L   + T  AL+ A C   ++   + V  +M +  +  N
Sbjct: 669 YASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 728

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           +  Y+IL+    R+ DV     L+ Q K++GV P++  +   I  CS+
Sbjct: 729 SFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSK 776



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 165/357 (46%), Gaps = 9/357 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N   + G+IS+ +++   M+ +G+    K Y +   N     K    AF  F    K   
Sbjct: 492 NLYTKVGKISKALEVSRVMKEEGVKHNLKTY-SMMINGFVKLKDWANAFAVFEDMVKEGM 550

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N ++S      + + A Q ++ +Q+   +   + +  +I   AKSG +    E
Sbjct: 551 KPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLE 610

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF  M   G  P VHT+  LI+G  +  Q+ KA      M    V  +   +  ++    
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYA 670

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G   +AF+    +  E   +D D  T  AL+KAC  +G++  A  V K +   NI   
Sbjct: 671 SVGDTGKAFEYFTRLQNE--GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 728

Query: 269 PEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
             VY I I+  ++ GD WE A  +   M K+GV PD    ++ I     AG +  A + +
Sbjct: 729 SFVYNILIDGWARRGDVWE-AADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 787

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +E +  G+   I +Y++L+   + A   +KAL  YE MK++ +KP  +  + L+T+L
Sbjct: 788 EEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 844



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/525 (20%), Positives = 220/525 (41%), Gaps = 64/525 (12%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+ + F +++       D   A +    ++  G+    ++YT+LI   A    +
Sbjct: 301 FEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDM 360

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D       +M   GIE ++ TY  ++ G +KAG    A   +   +  +   +  ++  +
Sbjct: 361 DEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKI 420

Query: 204 ITACGQSGAVDRAFDVLAEMNAE--------VHPV------------------------- 230
           I A  Q+  ++RA  ++ EM  E         H +                         
Sbjct: 421 IYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGF 480

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  +T G L+      G++ +A EV +++ +  +K   + Y++ IN   +  DW  A +
Sbjct: 481 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 540

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++DM K+G+ PD +  + +I      G ++ A + ++E +         ++  ++   +
Sbjct: 541 VFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYA 600

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            + + +++LE+++ M+     PTV T N LI  L +  Q+ K +E+L +M   G+  N  
Sbjct: 601 KSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEH 660

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
           TY+ ++       D        ++ + +G+  ++  ++ ++  C +              
Sbjct: 661 TYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCK-------------- 706

Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENL 528
             SGR Q        AL V +E + A  IP    V  +L         D+ E   L++ +
Sbjct: 707 --SGRMQS-------ALAVTKE-MSARNIPRNSFVYNIL-IDGWARRGDVWEAADLIQQM 755

Query: 529 ---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
              GV  D    ++  S     G+ + RA   +EE  + G+ P +
Sbjct: 756 KKEGVKPDIHTYTSFISACSKAGDMN-RATQTIEEMEALGVKPNI 799



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS   H+Y ++++     G   +  +    ++ +GL D+D   +      C     ++ A
Sbjct: 655 VSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGL-DVDIFTYEALLKACCKSGRMQSA 713

Query: 81  FRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               K      +P  +   +N+L+   A   D   A  +++ +++ G+K D   YT+ I+
Sbjct: 714 LAVTKEMSARNIPRNSF-VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFIS 772

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
            C+K+G ++   +   EM   G++PN+ TY  LI G A+A    KA   Y  M++  +KP
Sbjct: 773 ACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKP 832

Query: 196 DRVVFNALITACGQSGAVDRAF 217
           D+ V++ L+T+     ++  A+
Sbjct: 833 DKAVYHCLLTSLLSRASIAEAY 854



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 36/171 (21%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+++G+                     
Sbjct: 722 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------------------- 760

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   +S C+ + D   A Q +  ++  G+K + K YTTLI   
Sbjct: 761 -----------KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 809

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           A++   +     + EM   GI+P+   Y  L+        +A+A+   G+M
Sbjct: 810 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 860


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 130/541 (24%), Positives = 225/541 (41%), Gaps = 55/541 (10%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVP-NPTLST 94
           G+  +   L+++M RKG +     Y      +C + K +++AF  F   K+V   P + T
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATK-VEKAFLLFQEMKMVGVTPDVYT 325

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + +L+     +   E A  +   ++  G       YT LI    K+ +V    ++FH MV
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           +AG  PN  TYGAL+DG  KAG ++KAF  Y  +                   G S + D
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL------------------IGTSDSAD 427

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
             F    E   + H + P+ +T GAL+     A +VD A E+   +     +    VY  
Sbjct: 428 SDFYFPCE---DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDA 484

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   + G  + A  V+  MTK G +P     ++LID     G+++ A ++L +     
Sbjct: 485 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 544

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
            +  +++Y++++         +KAL+L   M+     P V T  ALI  L    ++  ++
Sbjct: 545 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           ++ + M   G  PN +TY +L+        ++   +LL + K+      L  ++C I   
Sbjct: 605 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF 664

Query: 455 SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 514
           S+ +  +  + E + S+                         GT+P   V   ++ C   
Sbjct: 665 SKSFIASLGILEEMESY-------------------------GTVPIAPVYGMLIDCFSK 699

Query: 515 PYNADIRERLVENLGVSADALKRSN--LCSLIDG--FGEYDPRAFSLLEEAASFGIVPCV 570
               +I   L + +     ++K  N    SLI           AF L  E    G VP +
Sbjct: 700 AGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPEL 759

Query: 571 S 571
           S
Sbjct: 760 S 760



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 156/364 (42%), Gaps = 11/364 (3%)

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF-QVLRLVQ 119
           KV +     V  S   +   FR  K +           +   A +   EG +   L +++
Sbjct: 40  KVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIE 99

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
               K D  L T +I+   ++   D      H M      PNV TY  L+ G  K  Q+ 
Sbjct: 100 REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLG 159

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT--- 236
                  +M ++   P+  +FN+L+ +         A+ +L  M     P  P ++    
Sbjct: 160 WCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCP--PGYVVYNI 217

Query: 237 -IGAL--MKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
            IG++   +   +   +D A ++Y +M+    +     V   A  C    G ++ A  + 
Sbjct: 218 FIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFA-RCLCGVGKFDKAFQLI 276

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            +M +KG +PD    S +I F  HA KVE AF + QE K  G++  + +Y+ L+ +   A
Sbjct: 277 KEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKA 336

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
              ++A  L+E M+S+   PTV T  ALI A     Q+P+  ++   M   G  PN +TY
Sbjct: 337 GLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 396

Query: 413 SILL 416
             L+
Sbjct: 397 GALV 400



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 168/400 (42%), Gaps = 22/400 (5%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A ++S+    Y +LI     ++        +R  L      Y A    +CK+ K +  A 
Sbjct: 406 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHK-VDHAH 464

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                + +    P    ++ L+     +   + A +V   + + G       YT+LI   
Sbjct: 465 ELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRM 524

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G++D   +V  +M+     PNV TY A+IDG  + G+  KA     +M  K   P+ 
Sbjct: 525 FKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 584

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V + ALI   G++G +D + D+  +M+ +     P+++T   L+     AG +D+AR + 
Sbjct: 585 VTYTALIDGLGKAGKIDLSLDLFTQMSRK--GCSPNYVTYRVLINHLCAAGLLDKARLLL 642

Query: 258 -KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS--VYDDMTKKGVIPDEVFLSALIDFA 314
            +M   Y  K     Y     C  Q     F  S  + ++M   G +P       LID  
Sbjct: 643 GEMKQTYWPK-----YLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCF 697

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIIS--YSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
             AG++E A E+ +E      SV   +  Y+SL+ A   A   ++A  LY  M      P
Sbjct: 698 SKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVP 757

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            +S    LI  L +  +  + +++       G+C   + +
Sbjct: 758 ELSVFVCLIKGLVEVKKWDEALQL-----CYGICHEGVNW 792



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/379 (20%), Positives = 149/379 (39%), Gaps = 47/379 (12%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +++ G +     Y  L+   + +G+VD  F V  EM  +G   +  T G       K G+
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
            A A     ++  ++ K D V+   +I+   ++   D A   L  M    +   P+ +T 
Sbjct: 91  WADALD---MIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRC--NSCIPNVVTY 145

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+       Q+   + +  M+        P ++   ++      D+ +A  + + MT 
Sbjct: 146 RTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTT 205

Query: 298 KGVIPD----EVFLSA-----------LIDFAGH-------------------------- 316
            G  P      +F+ +           L+D A                            
Sbjct: 206 CGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCG 265

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            GK + AF++++E   +G      +YS ++    +A   +KA  L++ MK + + P V T
Sbjct: 266 VGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 325

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
              LI + C    + +   +  +M+S+G  P  +TY+ L+ A  +   V     +  +  
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385

Query: 437 EDGVIPNLVMFKCII-GMC 454
           + G  PN V +  ++ G+C
Sbjct: 386 DAGCRPNDVTYGALVDGLC 404



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 129/327 (39%), Gaps = 40/327 (12%)

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
            C    GD E      D +   G  P +V  +AL+     AG+V+  F + +E    G  
Sbjct: 19  TCSHAAGDSE------DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFC 72

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
           +   +      A      W  AL++ E  +  KL   + T   +I+ L +     + M  
Sbjct: 73  MDRFTVGCFAHALCKEGRWADALDMIER-EDFKLDTVLCT--HMISGLMEASYFDEAMSF 129

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
           L  M+     PN +TY  LL    +K  +     +++    +G  PN  +F  ++   C+
Sbjct: 130 LHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCN 189

Query: 456 RR-YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 514
            + Y  A  L   + +   G P           +VY   I  G+I   E        L  
Sbjct: 190 EKDYAYAYKLLNRMTT--CGCPP--------GYVVYN--IFIGSICGQEK-------LPS 230

Query: 515 PYNADIRERLVENLGVSADALKRSNLCSL---IDGFGEYDPRAFSLLEEAASFGIVPCVS 571
           P   D+ E++   +  +   L + N+ +    + G G++D +AF L++E    G VP  S
Sbjct: 231 PDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD-KAFQLIKEMMRKGFVPDTS 289

Query: 572 F--KEIPVVVDARKLEIHTAKVSLSFQ 596
              K I  +  A K+E    K  L FQ
Sbjct: 290 TYSKVITFLCHATKVE----KAFLLFQ 312


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 178/404 (44%), Gaps = 13/404 (3%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVC 102
           LL DM+  G +  D      + N+   Q  ++ A   F  +P    +P + ++ +++   
Sbjct: 106 LLLDMDSLGFVP-DIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDAL 164

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
            ++K  + A +V R + + GL  D K    L+      G+VD  +E+   ++  G++ N 
Sbjct: 165 CNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNS 224

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
             Y ALIDG  + G+V KA      M      PD V +N L+  C + G VD A  ++  
Sbjct: 225 LVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVET 284

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCS 280
           M  E   V+PD  +   L+K    A  VDRA  +  M+ +   KG  +V  Y   I    
Sbjct: 285 M--ERSGVEPDLYSYNELLKGFCKANMVDRAHLM--MVERMQTKGMCDVVSYNTVITAFC 340

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           +         ++++M  KG+ PD V  + LID     G      ++L E     +    I
Sbjct: 341 KARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCI 400

Query: 341 SYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            Y++++   C N K    A  ++  M    + P V + NAL+   C   ++   M +  +
Sbjct: 401 FYTAVVDHLCKNGK-VDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDE 459

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           M+S GL P+ +TY +++    R   + +   +  Q  E G   N
Sbjct: 460 MQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLN 503



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/431 (21%), Positives = 186/431 (43%), Gaps = 12/431 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK--LVPNP 90
           ++L++ G I++ I L + M       +  V + RF  V      +  A  +++  ++P  
Sbjct: 18  SKLVKAGLINQAIYLFDQMTESNC-RVFSVDYNRFIGVLLRHSRLHLAHHYYRRHVIPRG 76

Query: 91  ------TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                 T S F   +    ++ +      +L  +   G   D   + T +    +  +++
Sbjct: 77  FSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLE 136

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              E+FH M + G +P+V +Y  +ID    A +  +A   +  +  K + PD     AL+
Sbjct: 137 TALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALV 196

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                 G VD A++++  +      V  + +   AL+      G+VD+A ++   + +  
Sbjct: 197 VGLCSGGRVDLAYELVVGVIKG--GVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTG 254

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
                  Y I +N C + G  + A  + + M + GV PD    + L+     A  V+ A 
Sbjct: 255 CVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAH 314

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            ++ E         ++SY++++ A   A+  +K  EL+E M    ++P + T N LI A 
Sbjct: 315 LMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAF 374

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
                     ++L +M  + + P+ I Y+ ++    +   V+V   +     E+GV P++
Sbjct: 375 LREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDV 434

Query: 445 VMFKCII-GMC 454
           + +  ++ G C
Sbjct: 435 ISYNALLNGFC 445



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 101/208 (48%), Gaps = 11/208 (5%)

Query: 25  VSEQLHSYNRLIRQGRISECID-----LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           V   L+SYN L++    +  +D     ++E M+ KG+ D+   Y+      CK+++  ++
Sbjct: 290 VEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVS-YNTVITAFCKARRT-RK 347

Query: 80  AFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            +  F+ +      P + TFN+L+        +    ++L  + +  +  DC  YT ++ 
Sbjct: 348 GYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVD 407

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K+GKVD    VF +MV  G+ P+V +Y AL++G  K  +V  A   +  M+SK + P
Sbjct: 408 HLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYP 467

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEM 223
           D V +  ++    +   +  A  V  +M
Sbjct: 468 DEVTYKLIVGGLIRGKKISLACRVWDQM 495


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 203/454 (44%), Gaps = 30/454 (6%)

Query: 21  YAHDVSEQLHSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           Y  DV   + + N     L+++GR      +  DM  +G    + V +    + C  Q  
Sbjct: 150 YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGA-SPNVVTYGTLIDGCCRQGD 208

Query: 77  IKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
             +AFR F      K+ P   + T  ++  +C  S+ SE A  + R ++ +G+  +   Y
Sbjct: 209 FLKAFRLFDEMIEKKIFPTVVIYTI-LIRGLCGESRISE-AESMFRTMRNSGMLPNLYTY 266

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            T++    K   V    E++ EM+  G+ PNV T+G LIDG  K  ++  A      M S
Sbjct: 267 NTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMAS 326

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
             V P+  V+N LI    ++G +  A  + +E+  E H + PD  T   L+K      ++
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEI--EKHEILPDVFTYSILIKGLCGVDRM 384

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           + A  + + + K         Y   I+   + G+ E A  V   MT+KG+ P+ +  S L
Sbjct: 385 EEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID    AGK+EAA  +  E   +G+   +++Y++L+       N ++A  L++ M+   L
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVL------------SDMKSLGLC-PNTITYSILLV 417
            P V T++ LI  LC   ++   +++             ++     LC PN + Y+ L+ 
Sbjct: 505 HPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQ 564

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                  +       S  +  G+ P++  F CI+
Sbjct: 565 GLCTDGRIFKASKFFSDMRCSGLRPDV--FTCIV 596



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 38/352 (10%)

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G+ D M++V+ +MV  G  PNV TYG LIDGC + G   KAF  +  M  K + P  V
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 199 VFNALITA-CGQS----------------------------------GAVDRAFDVLAEM 223
           ++  LI   CG+S                                    V +A ++  EM
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEM 289

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
             +   + P+ +T G L+       ++  AR+    +  + +     VY   I+   + G
Sbjct: 290 LGD--GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAG 347

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           +   A S++ ++ K  ++PD    S LI       ++E A  +LQE K +G     ++Y+
Sbjct: 348 NLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYN 407

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +L+       N +KA+E+   M    ++P + T + LI   C   ++   M + ++M   
Sbjct: 408 TLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIK 467

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           GL P+ + Y+ L+    +  + +    L  + +E G+ PN+    C+I G+C
Sbjct: 468 GLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLC 519



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 145/346 (41%), Gaps = 38/346 (10%)

Query: 134 ITTCAKSGKVDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           I TC  + +     E+FH +   A +  N   Y A+I     A   AKA           
Sbjct: 44  ILTCRTANQA---LELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKA----------- 89

Query: 193 VKPDRVVFNALITACGQSGAVDR----AFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               R +   LI  C Q+    R     F+VL+ +  E     P+    G L+ A +  G
Sbjct: 90  ----RCLMRDLIQ-CLQNSRRSRICCSVFNVLSRL--ESSKFTPN--VFGVLIIAFSEMG 140

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            V+ A  VY   +K ++    +   + ++   + G ++    VY DM  +G  P+ V   
Sbjct: 141 LVEEALWVY---YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYG 197

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            LID     G    AF +  E   + I   ++ Y+ L+          +A  ++  M++ 
Sbjct: 198 TLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNS 257

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            + P + T N ++   C    + K +E+  +M   GL PN +T+ IL+    + D++   
Sbjct: 258 GMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSA 317

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 473
              L      GV+PN+ ++ C+I G C     KA  L+E  LS +S
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYC-----KAGNLSE-ALSLHS 357



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 149/374 (39%), Gaps = 66/374 (17%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVC 102
            L DM   G++    VY+      CK+   + EA      +      P + T+++L+   
Sbjct: 320 FLIDMASFGVVPNIFVYNCLIDGYCKAGN-LSEALSLHSEIEKHEILPDVFTYSILIKGL 378

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
                 E A  +L+ +++ G   +   Y TLI    K G ++   EV  +M   GIEPN+
Sbjct: 379 CGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNI 438

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            T+  LIDG  KAG++  A G Y  M  K + PD V + ALI    + G    AF +  E
Sbjct: 439 ITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKE 498

Query: 223 MN-AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
           M  A +HP   +  T+  L+      G++  A +++                +A      
Sbjct: 499 MQEAGLHP---NVFTLSCLIDGLCKDGRISDAIKLF----------------LAKTGTDT 539

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
           TG      S  +++ +    P+ V  +ALI                              
Sbjct: 540 TG------SKTNELDRSLCSPNHVMYTALIQ----------------------------- 564

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
                G C++ + + KA + +  M+   L+P V T   +I        L   M + +D+ 
Sbjct: 565 -----GLCTDGRIF-KASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADIL 618

Query: 402 SLGLCPNTITYSIL 415
            +G+ PN+  Y +L
Sbjct: 619 KMGIIPNSSVYRVL 632


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 181/370 (48%), Gaps = 17/370 (4%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN  I    + GR+S+ +  L DM    LL     Y+   +  C+    +K AF
Sbjct: 336 SPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMK-AF 394

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F  + +    PT+ T+N L+       + E A Q+   +   G+  D   YT L+   
Sbjct: 395 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGS 454

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G +    E F EM++ G+E + + Y   I G  K G  ++AF     M +K   PD 
Sbjct: 455 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDL 514

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV- 256
           +++N ++    + G ++ A ++L +M ++   V PD++T  +++ A    G++ + RE+ 
Sbjct: 515 IIYNVVVDGLCKLGNLEEASELLQKMVSD--GVIPDYVTYTSIIHAHLENGRLRKGREIF 572

Query: 257 YKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           Y+M+ K     TP V  YT+ I+  +  G  E A   + +M +KG++P+ +  ++LI+  
Sbjct: 573 YEMLSK---GLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               +++ A+    E   +GI     SY+ L+    N  NWQ+AL LY+ M    ++P  
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDS 689

Query: 375 STMNALITAL 384
            T +AL+  L
Sbjct: 690 CTHSALLKQL 699



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 195/437 (44%), Gaps = 40/437 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    + G++ + +DLL +M+R+G               C               
Sbjct: 236 TYNTLLDSYCKGGKVQQGLDLLSEMQRRG---------------C--------------- 265

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            PN    T+N+L++  +   + E A  ++  + + GLK     Y  LI      G +   
Sbjct: 266 APNDV--TYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEA 323

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +  EMV  G  P V TY + I G  K G+++ A      M + N+ PD V +N LI  
Sbjct: 324 LSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYG 383

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G + +AF +  E+ +    + P  +T   L+      G+++ A+++   +    I 
Sbjct: 384 YCRLGNLMKAFLLFDELRSIY--LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIA 441

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                YTI +N   + G    A   +D+M  +G+  D    +  I      G    AF +
Sbjct: 442 PDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSL 501

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            +E   +G    +I Y+ ++       N ++A EL + M S  + P   T  ++I A  +
Sbjct: 502 QEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLE 561

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L K  E+  +M S GL P+ +TY++L+     K  +E   +  S+ +E G++PN++ 
Sbjct: 562 NGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVIT 621

Query: 447 FKCII-GMCS-RRYEKA 461
           +  +I G+C  RR ++A
Sbjct: 622 YNSLINGLCKVRRMDQA 638



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 160/370 (43%), Gaps = 26/370 (7%)

Query: 90  PTLSTFNMLMSVCASSKDS-EGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P +   ++ + V +S + S   A ++ R  + + G +    ++  ++   A++  + + +
Sbjct: 76  PVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAY 135

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            V   ++NA +   V     LI GC  +    K                  + + LI   
Sbjct: 136 WVMERVINANMHRIVD---VLIGGCVSSEVSVK------------------ILDLLIWVY 174

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +   V++   V  +M      + PD      +++   +   + +A EVY+ + ++ IK 
Sbjct: 175 SKKSMVEQCLSVFDKMIKS--RLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKP 232

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   Y   ++   + G  +    +  +M ++G  P++V  + LI+     G+ E A  ++
Sbjct: 233 TIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLI 292

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E    G+ V   +Y+ L+    N     +AL L E M      PTV+T N+ I  LC  
Sbjct: 293 GEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKL 352

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++   M+ LSDM +  L P+ ++Y+ L+    R  ++    +L  + +   + P +V +
Sbjct: 353 GRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTY 412

Query: 448 KCII-GMCSR 456
             ++ G+C +
Sbjct: 413 NTLLDGLCRQ 422



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 2/220 (0%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           D+  AF +   +   G   D  +Y  ++    K G ++   E+  +MV+ G+ P+  TY 
Sbjct: 494 DTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYT 553

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           ++I    + G++ K    +  M SK + P  V +  LI      G ++RAF   +EM  +
Sbjct: 554 SIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEK 613

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              + P+ IT  +L+       ++D+A   +  + +  I      YTI IN     G+W+
Sbjct: 614 --GILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQ 671

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            A S+Y  M  +GV PD    SAL+   G   K++A  ++
Sbjct: 672 EALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQL 711



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 130/326 (39%), Gaps = 37/326 (11%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++   ++L+ V +     E    V   + ++ L  D K    ++        +    EV+
Sbjct: 163 SVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVY 222

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M   GI+P + TY  L+D   K G+V +       M+ +   P+ V +N LI    + 
Sbjct: 223 RTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKK 282

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G  ++A  ++ EM                                      K  +K +  
Sbjct: 283 GEFEQAKGLIGEM-------------------------------------LKTGLKVSAY 305

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   I      G    A S+ ++M  KG  P     ++ I      G++  A + L + 
Sbjct: 306 TYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDM 365

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
               +   ++SY++L+       N  KA  L++ ++SI L PT+ T N L+  LC   +L
Sbjct: 366 LANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGEL 425

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILL 416
               ++  +M + G+ P+ +TY+IL+
Sbjct: 426 EVAQQLKVEMINEGIAPDIVTYTILV 451



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 5/179 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLL----DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90
           L + G + E  +LL+ M   G++        + HA   N  + +K  +  +        P
Sbjct: 524 LCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLEN-GRLRKGREIFYEMLSKGLTP 582

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++ T+ +L+   A     E AF     +QE G+  +   Y +LI    K  ++D  +  F
Sbjct: 583 SVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFF 642

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            EMV  GI PN ++Y  LI+     G   +A   Y  M  + V+PD    +AL+   G+
Sbjct: 643 AEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGK 701



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 20/232 (8%)

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           ++ L +++ M   +L P V   N ++  L D D + K +EV   M   G+ P  +TY+ L
Sbjct: 181 EQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTL 240

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVL---- 469
           L +  +   V+ GL LLS+ +  G  PN V +  +I   S++  +E+A+ L   +L    
Sbjct: 241 LDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGL 300

Query: 470 --SFNSGRPQIENKWT----SLALMVYREAIVAGTIPTVEVV-SKVLGCLQLPYNADIRE 522
             S  +  P I   +     + AL +  E ++ G  PTV    S + G  +L   +D  +
Sbjct: 301 KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQ 360

Query: 523 RLVENLG--VSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVPCV 570
           +L + L   +  D +  +   +LI G+       +AF L +E  S  + P +
Sbjct: 361 QLSDMLANNLLPDVVSYN---TLIYGYCRLGNLMKAFLLFDELRSIYLFPTI 409


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 156/325 (48%), Gaps = 2/325 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ML++      D   AF +   + ++GL+ D  +Y  L+    K G +D    +F  M
Sbjct: 465 TYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERM 524

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               ++P+  T+  +I+G A AG + +A     +MR     P  + +NALI    +   V
Sbjct: 525 KKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQV 584

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           +RA  VL +M+  +  + P+  T   +M+  A +G + +A E +  I +  +K    +Y 
Sbjct: 585 ERAVSVLDKMS--IAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYE 642

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++++ K  
Sbjct: 643 TLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKED 702

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI   I +++S + AC  A + Q+A  + + M  + LKP V T   LI          + 
Sbjct: 703 GIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRA 762

Query: 394 MEVLSDMKSLGLCPNTITYSILLVA 418
           ++   +MKS GL P+   Y  L+ +
Sbjct: 763 LKCFEEMKSAGLKPDEAAYHCLVTS 787



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 160/360 (44%), Gaps = 2/360 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +  ++ +M     ++D +    V   ++E G +     Y  LI    K GKV     V  
Sbjct: 393 IDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSK 452

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM + GI+ N  TY  LI+G       A AF  +  M    ++PDR ++N L+ A  + G
Sbjct: 453 EMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMG 512

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA  +   M  E   + P + T   +++  A AG + RA +   ++ +     T   
Sbjct: 513 NMDRAIRIFERMKKER--MQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMT 570

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+   +    E A SV D M+  G+ P+E   + ++     +G +  AFE   + K
Sbjct: 571 YNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 630

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+ + +  Y +L+ AC  +   Q AL +   M   K+       N LI        + 
Sbjct: 631 ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVW 690

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  MK  G+ PN  T++  + AC +  D++    ++ +  + G+ PN+  F  +I
Sbjct: 691 EAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLI 750



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 177/404 (43%), Gaps = 33/404 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +P P+   F +++   A   D   A      ++  G++ +  ++T+L+   A +  +
Sbjct: 245 FERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 304

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                   EM + G+E  V TY  LI G  K      A   +   ++K    + ++++ +
Sbjct: 305 RGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNI 364

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  QSG +DRA +++ EM  +    P+D                              
Sbjct: 365 IHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGF 424

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  I+ G L+      G+V +A  V K +  + IK   + Y++ IN      D+  A S
Sbjct: 425 RPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFS 484

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +++DM K G+ PD    + L++     G ++ A  I +  K + +     ++  ++   +
Sbjct: 485 IFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFA 544

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A + ++AL+  + M+     PTV T NALI  L    Q+ + + VL  M   G+ PN  
Sbjct: 545 VAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEH 604

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+I++       D+       ++ KE G+  ++ +++ ++  C
Sbjct: 605 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 648



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 162/370 (43%), Gaps = 3/370 (0%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N++ + C S  + + A +++R ++E G+ A   +Y +++     +        VF  +  
Sbjct: 363 NIIHAHCQSG-NMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKE 421

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G  P++ +YG LI+   K G+V KA      M S  +K +   ++ LI           
Sbjct: 422 CGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFAN 481

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           AF +  +M      + PD      L++A    G +DRA  +++ + K  ++ +   +   
Sbjct: 482 AFSIFEDMIKS--GLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPI 539

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I   +  GD + A    D M + G  P  +  +ALI       +VE A  +L +    GI
Sbjct: 540 IEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGI 599

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           +    +Y+ +M   + + +  KA E +  +K   LK  V     L+ A C   ++   + 
Sbjct: 600 APNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 659

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           V  +M    +  NT  Y+IL+    R+ DV     L+ Q KEDG+ PN+  F   I  C 
Sbjct: 660 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACC 719

Query: 456 RRYEKARTLN 465
           +  +  R  N
Sbjct: 720 KAGDMQRAEN 729



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 147/355 (41%), Gaps = 40/355 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
           N  I     +    + EDM + GL     +Y+      CK     +AI+   R  K    
Sbjct: 471 NGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQ 530

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+  TF  ++   A + D + A   L L++ +G       Y  LI    +  +V+    V
Sbjct: 531 PSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSV 590

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M  AGI PN HTY  ++ G A +G + KAF  +  ++   +K D  ++  L+ AC +
Sbjct: 591 LDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCK 650

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           SG +  A  V  EM+ +  P +        L+   A  G V  A ++ K + +  I    
Sbjct: 651 SGRMQSALAVTREMSFQKIPRNT--FIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNI 708

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             +T  IN C + GD + A +V  +M   G+ P+                          
Sbjct: 709 HTFTSYINACCKAGDMQRAENVIQEMADVGLKPN-------------------------- 742

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
                    + ++++L+   +      +AL+ +E MKS  LKP  +  + L+T+L
Sbjct: 743 ---------VKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSL 788



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TF   ++ C  + D + A  V++ + + GLK + K +TTLI   AK    D   + 
Sbjct: 706 PNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKC 765

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           F EM +AG++P+   Y  L+        V +     GI+
Sbjct: 766 FEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIL 804


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 187/426 (43%), Gaps = 7/426 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
           N +   G+ +E   L ++M  KGL      Y     + C+      AI    +  K    
Sbjct: 200 NVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIE 259

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            T+  +N L++      ++  A      + + GL      YT+LI+     G+    F+V
Sbjct: 260 FTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKV 319

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           ++EM   GI PN +T+ A+I G  +A  +A+A   +G M+ + + P  V +N +I    +
Sbjct: 320 YNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCR 379

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           SG +  AF +L EM  +     PD  T   L+    + G+V  A+E    +HK + K   
Sbjct: 380 SGNISEAFHLLDEMVGK--GFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNN 437

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  ++   + G ++ A S    M ++GV  D V  + LID         A F +L+E
Sbjct: 438 MCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKE 497

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             N G+    + Y++++   S A N ++A  L++ M      P V T  ALI  LC    
Sbjct: 498 MHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGL 557

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + K   +  +     + PN ITY   L    R  ++E  +  L  A   G +   V +  
Sbjct: 558 MDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQ-LHHAMLKGFLATTVSYNI 616

Query: 450 II-GMC 454
           +I G C
Sbjct: 617 LIRGFC 622



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 159/389 (40%), Gaps = 47/389 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    R G ISE   LL++M  KG +     Y      +C S   + EA  F   
Sbjct: 369 TYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLC-SVGRVSEAKEFVDD 427

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQ----VLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +        NM  S        EG F+      R++ E G+  D   Y  LI   A+   
Sbjct: 428 LHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHD 487

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
             A+F +  EM N G+ P+   Y  +ID  +KAG + +AFG + IM  +   P+ V + A
Sbjct: 488 TRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTA 547

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    ++G +D+A   L      V  V P+HIT G  +      G +++A +++  +  
Sbjct: 548 LINGLCKAGLMDKA--ELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAM-- 603

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                                              KG +   V  + LI      GK+E 
Sbjct: 604 ----------------------------------LKGFLATTVSYNILIRGFCRLGKIEE 629

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A ++L    +  I    I+YS+++       N Q+A++L+  M    LKP     + L+ 
Sbjct: 630 ATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVH 689

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
             C   +L K  E+  +M   G+  N +T
Sbjct: 690 GCCIAGELEKAFELRDEMIRRGMRSNHVT 718



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 104/482 (21%), Positives = 195/482 (40%), Gaps = 76/482 (15%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           R+G +   I  L+ M +  +      Y++     CK   A    + F +++     PT+ 
Sbjct: 239 RRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVV 298

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+  L+S   +  +   AF+V   +   G+  +   +T +I+   ++  +     +F EM
Sbjct: 299 TYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEM 358

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               I P+  TY  +I+G  ++G +++AF     M  K   PD   +  LI+     G V
Sbjct: 359 KERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRV 418

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-----------VDR---------- 252
             A + + +++ + H ++  ++   AL+      G+           V+R          
Sbjct: 419 SEAKEFVDDLHKDHHKLN--NMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYA 476

Query: 253 ------ARE--------VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
                 ARE        + K +H + ++    +YT  I+  S+ G+ + A  ++D M  +
Sbjct: 477 ILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDE 536

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G +P+ V  +ALI+    AG ++ A  + +E     ++   I+Y   +   +   N +KA
Sbjct: 537 GCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKA 596

Query: 359 LELYEHMKSIKLKPTVSTMNALITALC----------------DGDQLP----------- 391
           ++L+  M    L  TVS  N LI   C                D D LP           
Sbjct: 597 VQLHHAMLKGFLATTVS-YNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYE 655

Query: 392 --------KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
                   + +++   M   GL P+T+ YS L+  C    ++E    L  +    G+  N
Sbjct: 656 QCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSN 715

Query: 444 LV 445
            V
Sbjct: 716 HV 717



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 141/325 (43%), Gaps = 24/325 (7%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           RL+++  L  + +  + L+    +  + + +  +F ++V+A ++P+++ Y A++    + 
Sbjct: 85  RLMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCEL 144

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV---LAEMNAEVHPVD- 231
               KA      M     K   VV+N LI    +S  +  A ++   L +   E + V  
Sbjct: 145 KDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTY 204

Query: 232 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
                                +HIT   L+ +    G++D A      + K +I+ T   
Sbjct: 205 YGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYP 264

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   IN   + G+   A   +D+M  KG+ P  V  ++LI    + G+   AF++  E  
Sbjct: 265 YNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMT 324

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +GIS    ++++++     A    +A+ L+  MK  K+ P+  T N +I   C    + 
Sbjct: 325 AKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNIS 384

Query: 392 KTMEVLSDMKSLGLCPNTITYSILL 416
           +   +L +M   G  P+T TY  L+
Sbjct: 385 EAFHLLDEMVGKGFVPDTYTYRPLI 409



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/440 (20%), Positives = 178/440 (40%), Gaps = 24/440 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC--KSQKAIKEAFRFFKLVP-N 89
           N L+R  R ++ + L +D+    +     +Y A   ++C  K     KE   + +     
Sbjct: 104 NGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCK 163

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            ++  +N+L+     S+    A ++   + + GL+A+   Y          GK +    +
Sbjct: 164 LSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYY---------GKFNEAELL 214

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA--- 206
           F EM   G+  N  TY  LID   + G++  A G    M   +++     +N+LI     
Sbjct: 215 FKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCK 274

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            G + A    FD + +       + P  +T  +L+    N G+  +A +VY  +    I 
Sbjct: 275 LGNASAAKYYFDEMIDKG-----LTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGIS 329

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                +T  I+   +      A  ++ +M ++ ++P EV  + +I+    +G +  AF +
Sbjct: 330 PNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHL 389

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L E   +G      +Y  L+    +     +A E  + +     K      +AL+   C 
Sbjct: 390 LDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCK 449

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +    +     M   G+  + + Y+IL+    R+ D      LL +    G+ P+ V+
Sbjct: 450 EGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVI 509

Query: 447 FKCIIGMCSRRYEKARTLNE 466
           +  +I     R+ KA  L E
Sbjct: 510 YTNMID----RHSKAGNLKE 525



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 136/303 (44%), Gaps = 12/303 (3%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M +  + P V T  AL++G  +  +       +  + S NV+PD  +++A++ +  +   
Sbjct: 87  MKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKD 146

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
            ++A +++  M  E +      +    L+     + ++  A E+   + +  ++      
Sbjct: 147 FNKAKEMIHWM--EFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEA----- 199

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
               N  +  G +  A  ++ +M +KG+  + +  S LID     G+++ A   L +   
Sbjct: 200 ----NVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTK 255

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
             I   +  Y+SL+       N   A   ++ M    L PTV T  +LI+  C+  +  K
Sbjct: 256 ASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHK 315

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
             +V ++M + G+ PNT T++ ++    R + +   + L  + KE  ++P+ V +  +I 
Sbjct: 316 AFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIE 375

Query: 452 GMC 454
           G C
Sbjct: 376 GHC 378


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 193/414 (46%), Gaps = 7/414 (1%)

Query: 43  ECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNM 97
           + +DLL  M + KG   +D V +    N    +  + +A+  F  +    P+P + T++ 
Sbjct: 188 QALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSS 247

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           ++S  + ++  + A QV   + + G+  DC +YT+L+     SGK      +F +M   G
Sbjct: 248 IISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHG 307

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           +EP+V TY AL+D   K G+  +A   +  +  +  KPD   +  L+      GA+    
Sbjct: 308 VEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMH 367

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
           D+L  M  +   +   H     +M A A   +VD A  V+  + +  +      Y   ++
Sbjct: 368 DLLDLMMKK--GMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLD 425

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
                G  + A S ++ +  +G+ P+ V  + LI       K +   E+  E  ++GI +
Sbjct: 426 ILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICL 485

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
             I ++++MG         +A  L++ M  I ++P  +T N LI   C   ++ + M++L
Sbjct: 486 DTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLL 545

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             M   G+ P+ +TY+ ++    +   +E GL LL +    GV P +V ++ ++
Sbjct: 546 GVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLL 599



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 181/397 (45%), Gaps = 18/397 (4%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           + I    R   ++ +P      +L  +C   + S+    VLR + E G K D   YT L+
Sbjct: 124 RVITTGLRMSPILFSP------LLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILL 177

Query: 135 TTCAKSGKVDAMFEVFHEMVN-AGIEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
                        ++ H M +  G  P +V  Y  +I+G  + GQ+ KA+  +  M  + 
Sbjct: 178 KGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRG 237

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
             PD V ++++I+A  ++ A+D+A  V   M    + V PD I   +L+    ++G+   
Sbjct: 238 PSPDVVTYSSIISALSKTQAMDKATQVFTRMVK--NGVMPDCIMYTSLVHGYCSSGKPKE 295

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A  ++K + ++ ++     YT  ++   + G    A  ++D + K+G  PD      L+ 
Sbjct: 296 AIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLH 355

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G +    ++L     +G+ +G   ++ +MGA +      +AL ++ +M+   L P
Sbjct: 356 GYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNP 415

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGL 429
            +     ++  LC   ++   +   + +KS GL PN + ++ L   L  C++ D VE   
Sbjct: 416 DIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVE--- 472

Query: 430 MLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTL 464
            L  +  + G+  + + F  I+G +C + R  +A+ L
Sbjct: 473 ELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNL 509



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 147/334 (44%), Gaps = 13/334 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           G+  E I + + M R G+      Y A    +CK+ K+ +    F  LV     P  +T+
Sbjct: 291 GKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTY 350

Query: 96  NMLMSVCASSKDSEGAF----QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             L+   A+    EGA      +L L+ + G++    ++  ++   AK  KVD    VF 
Sbjct: 351 GTLLHGYAT----EGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFS 406

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G+ P++  YG ++D    AG+V  A   +  ++S+ + P+ VVF  LI       
Sbjct: 407 NMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCD 466

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             D+  ++  EM      +  D I   A+M      G+V  A+ ++ ++ +  I+     
Sbjct: 467 KWDKVEELAFEMIDR--GICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNT 524

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+     G  + A  +   M   GV P +V  + +I+     G++E    +L+E  
Sbjct: 525 YNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMD 584

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
            +G++ GI++Y  L+     A     A ELY  M
Sbjct: 585 GKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 618



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 154/353 (43%), Gaps = 17/353 (4%)

Query: 147 FEVFHEMVNAGIE---PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
             +F+ M  AG     PN+ TYG +I  C + G++  AF   G + +  ++   ++F+ L
Sbjct: 81  ISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPL 140

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI--H 261
           +           A D++     E+    PD  +   L+K   +     +A ++  ++  H
Sbjct: 141 LKGLCDRRRTSDAMDIVLRRMPELG-CKPDLFSYTILLKGLCDDKTSQQALDLLHIMADH 199

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K         YT  IN   + G  + A S++D M  +G  PD V  S++I        ++
Sbjct: 200 KGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD 259

Query: 322 AAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            A ++       G+    I Y+SL+ G CS+ K  ++A+ +++ M    ++P V T  AL
Sbjct: 260 KATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKP-KEAIGIFKKMCRHGVEPDVVTYTAL 318

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +  LC   +  +  ++   +   G  P++ TY  LL     +  +     LL    + G+
Sbjct: 319 MDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGM 378

Query: 441 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR-----PQIENKWTSLALM 488
                +F  I+G     Y K   ++E +L F++ R     P I N  T L ++
Sbjct: 379 QLGHHIFNMIMGA----YAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDIL 427



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 21/248 (8%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H +N ++    +  ++ E + +  +M ++GL + D V +    ++  +   + +A   F 
Sbjct: 383 HIFNMIMGAYAKHNKVDEALLVFSNMRQQGL-NPDIVNYGTVLDILCTAGRVDDALSQFN 441

Query: 86  ------LVPNPTLSTFNMLMSVCASSK---DSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
                 L PN  + T  ++  +C   K     E AF+++    + G+  D   +  ++  
Sbjct: 442 SLKSEGLAPNIVVFT-TLIHGLCTCDKWDKVEELAFEMI----DRGICLDTIFFNAIMGN 496

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G+V     +F  MV  GIEPN +TY  LIDG    G++ +A    G+M    VKP 
Sbjct: 497 LCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPS 556

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +N +I    Q+G ++    +L EM+ +   V+P  +T   L++    AG+   A+E+
Sbjct: 557 DVTYNTIINGYSQNGRIEDGLTLLREMDGK--GVNPGIVTYEMLLQGLFQAGRTVAAKEL 614

Query: 257 YKMIHKYN 264
           Y  + K++
Sbjct: 615 YLRMIKWD 622


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 129/538 (23%), Positives = 223/538 (41%), Gaps = 55/538 (10%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVP-NPTLST 94
           G+  +   L+++M RKG +     Y      +C + K +++AF  F   K+V   P + T
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATK-VEKAFLLFQEMKMVGVTPDVYT 325

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + +L+     +   E A  +   ++  G       YT LI    K+ +V    ++FH MV
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           +AG  PN  TYGAL+DG  KAG ++KAF  Y  +                   G S + D
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL------------------IGTSDSAD 427

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
             F    E   + H + P+ +T GAL+     A +VD A E+   +     +    VY  
Sbjct: 428 SDFYFPCE---DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDA 484

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   + G  + A  V+  MTK G +P     ++LID     G+++ A ++L +     
Sbjct: 485 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 544

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
            +  +++Y++++         +KAL+L   M+     P V T  ALI  L    ++  ++
Sbjct: 545 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 604

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           ++ + M   G  PN +TY +L+        ++   +LL + K+      L  ++C I   
Sbjct: 605 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF 664

Query: 455 SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 514
           S+ +  +  + E + S+                         GT+P   V   ++ C   
Sbjct: 665 SKSFIASLGILEEMESY-------------------------GTVPIAPVYGMLIDCFSK 699

Query: 515 PYNADIRERLVENLGVSADALKRSN--LCSLIDG--FGEYDPRAFSLLEEAASFGIVP 568
               +I   L + +     ++K  N    SLI           AF L  E    G VP
Sbjct: 700 AGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVP 757



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 156/364 (42%), Gaps = 11/364 (3%)

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF-QVLRLVQ 119
           KV +     V  S   +   FR  K +           +   A +   EG +   L +++
Sbjct: 40  KVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIE 99

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
               K D  L T +I+   ++   D      H M      PNV TY  L+ G  K  Q+ 
Sbjct: 100 REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLG 159

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT--- 236
                  +M ++   P+  +FN+L+ +         A+ +L  M     P  P ++    
Sbjct: 160 WCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCP--PGYVVYNI 217

Query: 237 -IGAL--MKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
            IG++   +   +   +D A ++Y +M+    +     V   A  C    G ++ A  + 
Sbjct: 218 FIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFA-RCLCGVGKFDKAFQLI 276

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            +M +KG +PD    S +I F  HA KVE AF + QE K  G++  + +Y+ L+ +   A
Sbjct: 277 KEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKA 336

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
              ++A  L+E M+S+   PTV T  ALI A     Q+P+  ++   M   G  PN +TY
Sbjct: 337 GLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 396

Query: 413 SILL 416
             L+
Sbjct: 397 GALV 400



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 132/293 (45%), Gaps = 12/293 (4%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           + A +V   + + G       YT+LI    K G++D   +V  +M+     PNV TY A+
Sbjct: 496 DSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAM 555

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           IDG  + G+  KA     +M  K   P+ V + ALI   G++G +D + D+  +M+ +  
Sbjct: 556 IDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRK-- 613

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
              P+++T   L+     AG +D+AR +  +M   Y  K     Y     C  Q     F
Sbjct: 614 GCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPK-----YLQGYRCAIQGFSKSF 668

Query: 288 ACS--VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--YS 343
             S  + ++M   G +P       LID    AG++E A E+ +E      SV   +  Y+
Sbjct: 669 IASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYA 728

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
           SL+ A   A   ++A  LY  M      P +S    LI  L +  +  + +++
Sbjct: 729 SLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/379 (20%), Positives = 149/379 (39%), Gaps = 47/379 (12%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +++ G +     Y  L+   + +G+VD  F V  EM  +G   +  T G       K G+
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGR 90

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
            A A     ++  ++ K D V+   +I+   ++   D A   L  M    +   P+ +T 
Sbjct: 91  WADALD---MIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRC--NSCIPNVVTY 145

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+       Q+   + +  M+        P ++   ++      D+ +A  + + MT 
Sbjct: 146 RTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTT 205

Query: 298 KGVIPD----EVFLSA-----------LIDFAGH-------------------------- 316
            G  P      +F+ +           L+D A                            
Sbjct: 206 CGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCG 265

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            GK + AF++++E   +G      +YS ++    +A   +KA  L++ MK + + P V T
Sbjct: 266 VGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYT 325

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
              LI + C    + +   +  +M+S+G  P  +TY+ L+ A  +   V     +  +  
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385

Query: 437 EDGVIPNLVMFKCII-GMC 454
           + G  PN V +  ++ G+C
Sbjct: 386 DAGCRPNDVTYGALVDGLC 404



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 130/304 (42%), Gaps = 13/304 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFF 84
           Y+ LI    + G+I    ++   M + G L     Y +   R F   +   A+K   +  
Sbjct: 482 YDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQML 541

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K    P + T+  ++       +SE A ++L L++E G   +   YT LI    K+GK+D
Sbjct: 542 KDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKID 601

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++F +M   G  PN  TY  LI+    AG + KA    G M+          +   I
Sbjct: 602 LSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAI 661

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY- 263
              G S +   +  +L EM  E +   P     G L+   + AG+++ A E++K + +  
Sbjct: 662 Q--GFSKSFIASLGILEEM--ESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVP 717

Query: 264 -NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
            ++K   ++Y   I         E A  +Y +MT++G +P+      LI       K + 
Sbjct: 718 SSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDE 777

Query: 323 AFEI 326
           A ++
Sbjct: 778 ALQL 781



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 129/327 (39%), Gaps = 40/327 (12%)

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
            C    GD E      D +   G  P +V  +AL+     AG+V+  F + +E    G  
Sbjct: 19  TCSHAAGDSE------DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFC 72

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
           +   +      A      W  AL++ E  +  KL   + T   +I+ L +     + M  
Sbjct: 73  MDRFTVGCFAHALCKEGRWADALDMIER-EDFKLDTVLCT--HMISGLMEASYFDEAMSF 129

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
           L  M+     PN +TY  LL    +K  +     +++    +G  PN  +F  ++   C+
Sbjct: 130 LHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCN 189

Query: 456 RR-YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 514
            + Y  A  L   + +   G P           +VY   I  G+I   E        L  
Sbjct: 190 EKDYAYAYKLLNRMTT--CGCPP--------GYVVYN--IFIGSICGQEK-------LPS 230

Query: 515 PYNADIRERLVENLGVSADALKRSNLCSL---IDGFGEYDPRAFSLLEEAASFGIVPCVS 571
           P   D+ E++   +  +   L + N+ +    + G G++D +AF L++E    G VP  S
Sbjct: 231 PDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD-KAFQLIKEMMRKGFVPDTS 289

Query: 572 F--KEIPVVVDARKLEIHTAKVSLSFQ 596
              K I  +  A K+E    K  L FQ
Sbjct: 290 TYSKVITFLCHATKVE----KAFLLFQ 312


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 193/414 (46%), Gaps = 7/414 (1%)

Query: 43  ECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNM 97
           + +DLL  M + KG   +D V +    N    +  + +A+  F  +    P+P + T++ 
Sbjct: 189 QALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSS 248

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           ++S  + ++  + A QV   + + G+  DC +YT+L+     SGK      +F +M   G
Sbjct: 249 IISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHG 308

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           +EP+V TY AL+D   K G+  +A   +  +  +  KPD   +  L+      GA+    
Sbjct: 309 VEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMH 368

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
           D+L  M  +   +   H     +M A A   +VD A  V+  + +  +      Y   ++
Sbjct: 369 DLLDLMMKK--GMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLD 426

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
                G  + A S ++ +  +G+ P+ V  + LI       K +   E+  E  ++GI +
Sbjct: 427 ILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICL 486

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
             I ++++MG         +A  L++ M  I ++P  +T N LI   C   ++ + M++L
Sbjct: 487 DTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLL 546

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             M   G+ P+ +TY+ ++    +   +E GL LL +    GV P +V ++ ++
Sbjct: 547 GVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLL 600



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 147/334 (44%), Gaps = 13/334 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           G+  E I + + M R G+      Y A    +CK+ K+ +    F  LV     P  +T+
Sbjct: 292 GKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTY 351

Query: 96  NMLMSVCASSKDSEGAF----QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             L+   A+    EGA      +L L+ + G++    ++  ++   AK  KVD    VF 
Sbjct: 352 GTLLHGYAT----EGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFS 407

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G+ P++  YG ++D    AG+V  A   +  ++S+ + P+ VVF  LI       
Sbjct: 408 NMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCD 467

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             D+  ++  EM      +  D I   A+M      G+V  A+ ++ ++ +  I+     
Sbjct: 468 KWDKVEELAFEMIDR--GICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNT 525

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+     G  + A  +   M   GV P +V  + +I+     G++E    +L+E  
Sbjct: 526 YNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMD 585

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
            +G++ GI++Y  L+     A     A ELY  M
Sbjct: 586 GKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 619



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 21/248 (8%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H +N ++    +  ++ E + +  +M ++GL + D V +    ++  +   + +A   F 
Sbjct: 384 HIFNMIMGAYAKHNKVDEALLVFSNMRQQGL-NPDIVNYGTVLDILCTAGRVDDALSQFN 442

Query: 86  ------LVPNPTLSTFNMLMSVCASSK---DSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
                 L PN  + T  ++  +C   K     E AF+++    + G+  D   +  ++  
Sbjct: 443 SLKSEGLAPNIVVFT-TLIHGLCTCDKWDKVEELAFEMI----DRGICLDTIFFNAIMGN 497

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G+V     +F  MV  GIEPN +TY  LIDG    G++ +A    G+M    VKP 
Sbjct: 498 LCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPS 557

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +N +I    Q+G ++    +L EM+ +   V+P  +T   L++    AG+   A+E+
Sbjct: 558 DVTYNTIINGYSQNGRIEDGLTLLREMDGK--GVNPGIVTYEMLLQGLFQAGRTVAAKEL 615

Query: 257 YKMIHKYN 264
           Y  + K++
Sbjct: 616 YLRMIKWD 623



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 159/358 (44%), Gaps = 26/358 (7%)

Query: 147 FEVFHEMVNAGIE---PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFN 201
             +F+ M  AG     PN+ TYG +I  C + G++  AF   G + +  ++  P+ +  +
Sbjct: 81  ISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSS 140

Query: 202 A---LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           +   L TA G++  +D     + E+  +     PD  +   L+K   +     +A ++  
Sbjct: 141 SQGPLCTAGGRAMRMDIVLRRMPELGCK-----PDLFSYTILLKGLCDDKTSQQALDLLH 195

Query: 259 MI--HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           ++  HK         YT  IN   + G  + A S++D M  +G  PD V  S++I     
Sbjct: 196 IMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSK 255

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVS 375
              ++ A ++       G+    I Y+SL+ G CS+ K  ++A+ +++ M    ++P V 
Sbjct: 256 TQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKP-KEAIGIFKKMCRHGVEPDVV 314

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T  AL+  LC   +  +  ++   +   G  P++ TY  LL     +  +     LL   
Sbjct: 315 TYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLM 374

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR-----PQIENKWTSLALM 488
            + G+     +F  I+G     Y K   ++E +L F++ R     P I N  T L ++
Sbjct: 375 MKKGMQLGHHIFNMIMGA----YAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDIL 428


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 192/430 (44%), Gaps = 24/430 (5%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           +L  +C + +  E    +L  + E G   D   Y T+I    + G+V+  + +F EM++ 
Sbjct: 131 LLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQ 190

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           GI PNV TY  +IDG  KA  V +A G +  M  + VKPD   +N LI     +G     
Sbjct: 191 GIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEV 250

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             +L EM+   H ++PD IT   L+      G+   AR  +  + +  IK    +Y I +
Sbjct: 251 VQMLEEMST--HGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILL 308

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK--VEAAFEILQEAKNQG 334
           +  +  G      S  D M   GV P+    +  I F  +A K  +E A  I  + + QG
Sbjct: 309 HGYATKGALSEMHSFLDLMVGNGVSPNRRIFN--IMFCAYAKKAMIEEAMHIFNKMRQQG 366

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +S  ++S+ +L+ A         A+  +  M +  + P +   ++L+  LC   +  K  
Sbjct: 367 LSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAE 426

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           E+  ++   G+C + + ++ L+     +  V     L+      GV PN++ +  ++ G 
Sbjct: 427 ELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGH 486

Query: 454 C--SRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTI 499
           C   R  E A+ L+  V+  N  +P  E  +T L            A  ++RE ++ G  
Sbjct: 487 CLTGRIDEAAKLLD--VMVSNGLKPN-EFTYTILLRGYCKARRVDDAYSLFREMLMKGVT 543

Query: 500 PTVEVVSKVL 509
           P V   + +L
Sbjct: 544 PVVATYNTIL 553



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 179/422 (42%), Gaps = 40/422 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   R+G++ +  +L  +M  +G+      Y      +CK+Q   +    F +++     
Sbjct: 169 NGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVK 228

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+N L+    S+   +   Q+L  +   GL+ DC  Y  L+    K+G+       
Sbjct: 229 PDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLF 288

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M   GI+P+V  Y  L+ G A  G +++      +M    V P+R +FN +  A  +
Sbjct: 289 FDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAK 348

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              ++ A  +  +M  +   + PD ++ GAL+ A    G+VD A      + ++N     
Sbjct: 349 KAMIEEAMHIFNKMRQQ--GLSPDVVSFGALIDALCKLGRVDDA------VLQFN----- 395

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
                                    M  +GV P+    S+L+      GK E A E+  E
Sbjct: 396 ------------------------QMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFE 431

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             +QGI V  + +++LM    N     +A  L + M  + ++P V + N L+   C   +
Sbjct: 432 VLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGR 491

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++L  M S GL PN  TY+ILL    +   V+    L  +    GV P +  +  
Sbjct: 492 IDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNT 551

Query: 450 II 451
           I+
Sbjct: 552 IL 553



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 203/427 (47%), Gaps = 12/427 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLV 87
           +H Y   +  G+  E + +LE+M   GL + D + +A   + +CK+ +  +EA  FF  +
Sbjct: 238 IHGY---LSTGKWKEVVQMLEEMSTHGL-EPDCITYALLLDYLCKNGRC-REARLFFDSM 292

Query: 88  ----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P ++ + +L+   A+          L L+   G+  + +++  +    AK   +
Sbjct: 293 FRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMI 352

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +    +F++M   G+ P+V ++GALID   K G+V  A   +  M ++ V P+  VF++L
Sbjct: 353 EEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSL 412

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +      G  ++A ++  E+  +   VD   +    LM    N G+V  A+ +  ++ + 
Sbjct: 413 VYGLCTVGKWEKAEELFFEVLDQGICVDA--VFFNTLMCNLCNEGRVMEAQRLIDLMIRV 470

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            ++     Y   +     TG  + A  + D M   G+ P+E   + L+     A +V+ A
Sbjct: 471 GVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDA 530

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           + + +E   +G++  + +Y++++        + +A ELY +M + + K  + T N ++  
Sbjct: 531 YSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNG 590

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC  + + +  ++   + S     +++T++I++ A  +    E  + L +     G++P+
Sbjct: 591 LCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPD 650

Query: 444 LVMFKCI 450
           +V ++ I
Sbjct: 651 VVTYRLI 657



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/389 (20%), Positives = 160/389 (41%), Gaps = 46/389 (11%)

Query: 125 ADCKLYTTLITTCAKSG------KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           A  + +  L+T  +++G      +V ++F       ++ + PN  TY  LI    + G++
Sbjct: 47  ASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMGRL 106

Query: 179 AKAFGAYGI------------------------------------MRSKNVKPDRVVFNA 202
              F A+G+                                    M      PD V +N 
Sbjct: 107 EHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNT 166

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I    + G V++A+++  EM  +  P  P+ +T   ++     A  VDRA+ V++ +  
Sbjct: 167 VINGFFREGQVEKAYNLFLEMMDQGIP--PNVVTYTTVIDGLCKAQVVDRAKGVFQQMID 224

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             +K     Y   I+    TG W+    + ++M+  G+ PD +  + L+D+    G+   
Sbjct: 225 RGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCRE 284

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A         +GI   +  Y+ L+   +      +     + M    + P     N +  
Sbjct: 285 ARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFC 344

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           A      + + M + + M+  GL P+ +++  L+ A  +   V+  ++  +Q   +GV P
Sbjct: 345 AYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTP 404

Query: 443 NLVMFKCII-GMCS-RRYEKARTLNEHVL 469
           N+ +F  ++ G+C+  ++EKA  L   VL
Sbjct: 405 NIFVFSSLVYGLCTVGKWEKAEELFFEVL 433



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/430 (20%), Positives = 174/430 (40%), Gaps = 42/430 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + GR  E     + M RKG+   D   +A   +   ++ A+ E   F  L+     +P
Sbjct: 276 LCKNGRCREARLFFDSMFRKGI-KPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSP 334

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               FN++    A     E A  +   +++ GL  D   +  LI    K G+VD     F
Sbjct: 335 NRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQF 394

Query: 151 HEMVNAGIEPNVHTYGALIDG----------------------CAKA------------- 175
           ++M+N G+ PN+  + +L+ G                      C  A             
Sbjct: 395 NQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNE 454

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G+V +A     +M    V+P+ + +N L+     +G +D A  +L  M +  + + P+  
Sbjct: 455 GRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVS--NGLKPNEF 512

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L++    A +VD A  +++ +    +      Y   ++   QTG +  A  +Y +M
Sbjct: 513 TYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNM 572

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
                  D    + +++       V+ AF++ +   ++   +  ++++ ++GA       
Sbjct: 573 INSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRK 632

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           + A++L+  + +  L P V T   +   L +   L +   + S M+  G  PN+   + L
Sbjct: 633 EDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNAL 692

Query: 416 LVACERKDDV 425
           +     + D+
Sbjct: 693 VRRLLHRGDI 702



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 147/325 (45%), Gaps = 22/325 (6%)

Query: 56  LLDMDKVYHARFFN--VCK--SQKAIKEAFRFFKLV----PNPTLSTFNMLMSV-CASSK 106
           +LD      A FFN  +C   ++  + EA R   L+      P + ++N L++  C + +
Sbjct: 432 VLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGR 491

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
             E A ++L ++   GLK +   YT L+    K+ +VD  + +F EM+  G+ P V TY 
Sbjct: 492 IDEAA-KLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYN 550

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            ++ G  + G+ ++A   Y  M +   K D   +N ++    ++  VD AF +   + ++
Sbjct: 551 TILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSK 610

Query: 227 VHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT---IAINCCSQ 281
               DP  D +T   ++ A    G+ + A +++  I  Y +   P+V T   IA N   +
Sbjct: 611 ----DPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGL--VPDVVTYRLIAENLIEE 664

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
               EF   ++  M K G  P+   L+AL+    H G +  A   L +   +  S+   +
Sbjct: 665 GSLGEFD-GLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKLDEKNFSLEAST 723

Query: 342 YSSLMGACSNAKNWQKALELYEHMK 366
            S L+   S  +    A  L E  +
Sbjct: 724 TSMLISLYSRGEYQPHAKSLPEKYR 748



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 32/180 (17%), Positives = 78/180 (43%), Gaps = 3/180 (1%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFN 96
           R+ +   L  +M  KG+  +   Y+     + ++ +  +    +  ++ + T   + T+N
Sbjct: 526 RVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYN 585

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           ++++    +   + AF++ R +     + D   +  +I    K G+ +   ++F  +   
Sbjct: 586 IILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAY 645

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G+ P+V TY  + +   + G + +  G +  M      P+  + NAL+      G + RA
Sbjct: 646 GLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRA 705


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 197/423 (46%), Gaps = 13/423 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN +I    R G+ S+ + + ++M   G+      Y+       K    ++  FR    
Sbjct: 196 SYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGD-LEAGFRLRDQ 254

Query: 87  V----PNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +    P P + T+N+L+S +C + +  E    +  +   + L  D   Y+ L     ++G
Sbjct: 255 MLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSML-PDGFTYSILFDGLTRTG 313

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +   M  +F E +  G+    +T   L++G  K G+VAKA   + ++    + P  V++N
Sbjct: 314 ESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYN 373

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    Q   +  AF +  +M +    + PDHIT  AL+        V +A ++   + 
Sbjct: 374 TLINGYCQVRDLRGAFCIFEQMKSR--HIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K  +  + E +   I+     G  E   +V  DM +KG+  D +   +++      GK+ 
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  IL +   + ++     Y+S++ A   + + ++AL L E MK+  +  ++ T N L+
Sbjct: 492 EAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLL 551

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   Q+ +  E++  +++ GL P+ ++Y+ ++ AC  K D +  L LL +  + G+ 
Sbjct: 552 KGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIR 611

Query: 442 PNL 444
           P L
Sbjct: 612 PTL 614



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 206/472 (43%), Gaps = 51/472 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLV--QEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P    +N ++  C ++ D + A  +LR +   E     D   Y  +I    +SGK     
Sbjct: 155 PDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 214

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +VF EMV+ G+ PN  TY  +IDG  K G +   F     M     KP+ V +N L++  
Sbjct: 215 KVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGL 274

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHIT------------------------------I 237
            ++G +D    ++ EM +  H + PD  T                              +
Sbjct: 275 CRTGRMDETRALMDEMAS--HSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVML 332

Query: 238 GA-----LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           GA     L+      G+V +A++V++M+    +  T  +Y   IN   Q  D   A  ++
Sbjct: 333 GAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIF 392

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           + M  + + PD +  +ALI+       V  A +++ E +  G+   + ++++L+ A   A
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 452

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
              +K   +   M+   +K  V +  +++ A C   ++P+ + +L DM    + PN   Y
Sbjct: 453 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 512

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA--------- 461
           + ++ A     D E  L+L+ + K  GV  ++V +  ++ G+C S + ++A         
Sbjct: 513 NSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRN 572

Query: 462 RTLNEHVLSFNSGRPQIENKW-TSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
           + L   V+S+N+      NK  T  AL + +E    G  PT+     ++  L
Sbjct: 573 QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSAL 624



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 194/409 (47%), Gaps = 20/409 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------IKEA 80
           +YN L+    R GR+ E   L+++M    +L     Y   F  + ++ ++        E+
Sbjct: 266 TYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAES 325

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +   ++   T S   +L  +C   K ++ A QV  ++   GL     +Y TLI    + 
Sbjct: 326 LKKGVMLGAYTCSI--LLNGLCKDGKVAK-AKQVFEMLVHTGLVPTTVIYNTLINGYCQV 382

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
             +   F +F +M +  I P+  TY ALI+G  K   V KA      M    V P    F
Sbjct: 383 RDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETF 442

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-M 259
           N LI A G +G +++ F VL++M  +   +  D I+ G+++KA    G++  A  +   M
Sbjct: 443 NTLIDAYGTAGQLEKCFTVLSDMQQK--GIKSDVISFGSVVKAFCKNGKIPEAVAILDDM 500

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           I+K ++    +VY   I+   ++GD E A  + + M   GV    V  + L+     + +
Sbjct: 501 IYK-DVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ 559

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A E++   +NQG+   ++SY++++ AC N  +  KALEL + M    ++PT+ T + 
Sbjct: 560 IDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHT 619

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACERKDDV 425
           L++AL    ++     +   M    + P++  Y I++   V CE    V
Sbjct: 620 LVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKV 668



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 181/397 (45%), Gaps = 13/397 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-----QKAIKEAF 81
           +YN +I    + G +     L + M   G       Y+     +C++      +A+ +  
Sbjct: 231 TYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEM 290

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
               ++P+    T+++L      + +S+    +     + G+       + L+    K G
Sbjct: 291 ASHSMLPDGF--TYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDG 348

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KV    +VF  +V+ G+ P    Y  LI+G  +   +  AF  +  M+S++++PD + +N
Sbjct: 349 KVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYN 408

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           ALI    +   V +A D++ EM  E   VDP   T   L+ A   AGQ+++   V   + 
Sbjct: 409 ALINGLCKLEMVTKAEDLVMEM--EKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQ 466

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  IK     +   +    + G    A ++ DDM  K V P+    +++ID    +G  E
Sbjct: 467 QKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTE 526

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  ++++ KN G+S  I++Y+ L+     +    +A EL   +++  L+P V + N +I
Sbjct: 527 QALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTII 586

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           +A C+     K +E+L +M   G+ P   T   L+ A
Sbjct: 587 SACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSA 623



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/496 (19%), Positives = 198/496 (39%), Gaps = 86/496 (17%)

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P++ +   L++     G+ A    A+G++ +   +PD   +N ++ AC  +G +D A  +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIH--------KYN------ 264
           L  M        PD  +   ++     +G+   A +V+ +M+          YN      
Sbjct: 180 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGH 239

Query: 265 IKG------------------TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
           +KG                   P V  Y + ++   +TG  +   ++ D+M    ++PD 
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDG 299

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-------------------------- 338
              S L D     G+ +    +  E+  +G+ +G                          
Sbjct: 300 FTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEM 359

Query: 339 ---------IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                     + Y++L+      ++ + A  ++E MKS  ++P   T NALI  LC  + 
Sbjct: 360 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 419

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + K  +++ +M+  G+ P+  T++ L+ A      +E    +LS  ++ G+  +++ F  
Sbjct: 420 VTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGS 479

Query: 450 II-GMC--SRRYEKARTLNEHVLSFNSGRPQ---------IENKWTSLALMVYREAIVAG 497
           ++   C   +  E    L++ +    +   Q         IE+  T  AL++  +   +G
Sbjct: 480 VVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSG 539

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLV---ENLGVSADALKRSNLCSLIDGFGEYDPRA 554
              ++   + +L  L      D  E L+    N G+  D +  + + S     G+ D +A
Sbjct: 540 VSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTD-KA 598

Query: 555 FSLLEEAASFGIVPCV 570
             LL+E   +GI P +
Sbjct: 599 LELLQEMNKYGIRPTL 614



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 19/194 (9%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           DV+     YN +I      G   + + L+E M+  G+      Y+     +C+S + I E
Sbjct: 504 DVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQ-IDE 562

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A      + N    P + ++N ++S C +  D++ A ++L+ + + G++   +   TL++
Sbjct: 563 AEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVS 622

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVA---KAFGAYGI-- 187
             A +G+V  M  ++ +M++  +EP+   YG ++D    C    +VA   K     GI  
Sbjct: 623 ALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAF 682

Query: 188 --MRSKNVKPDRVV 199
              +  N + DR++
Sbjct: 683 DDTKRSNHELDRII 696


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 192/414 (46%), Gaps = 13/414 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RFFKLVPNPTLS 93
           +  R    I L E M+  G+  +    +     VC+S +  + +    +  KL   P L 
Sbjct: 94  KMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLV 153

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           TF  L+         E A  +   +   G + +   YTTLI    K+  ++   E+F++M
Sbjct: 154 TFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQM 213

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            + GI PNV TY +L+ G  + G+ + A      M  + ++P+ + F ALI A  + G +
Sbjct: 214 GDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKI 273

Query: 214 DRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             A   + V+ +M+     V PD  T  AL+      G++D AR+++ ++          
Sbjct: 274 MEAKELYKVMIQMS-----VYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEV 328

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            YT  I+   ++   E    ++ +M++KG++ + +  + LI      G+ + A E+  + 
Sbjct: 329 TYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQM 388

Query: 331 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            ++     I +Y+ L+ G C N    +KAL ++++M+  ++   + T   +I  +C   +
Sbjct: 389 GSRRAPPDIRTYNVLLDGLCYNGYV-EKALMIFKYMRKREMDINIVTYTIIIQGMCKVGK 447

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           +    ++   + S G+ PN ITY+ ++    R+  +     L  + KEDG +PN
Sbjct: 448 VEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPN 501



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 194/438 (44%), Gaps = 14/438 (3%)

Query: 31  SYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +Y +++R G    + +E +DL   M     L    V   R  +V    K        F+ 
Sbjct: 49  NYRKILRNGLHNLQFNEALDLFTRMVHSRPLP-SIVDFTRLLSVIAKMKRFDVVISLFEQ 107

Query: 86  ---LVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              L  +P L T N++M+ VC SS+    +  + ++++  G + D   +T+L+       
Sbjct: 108 MQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMK-LGFEPDLVTFTSLLHGFCHWN 166

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +++    +F ++V  G  PNV TY  LI    K   +  A   +  M    ++P+ V +N
Sbjct: 167 RIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYN 226

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +L++   + G    A  +L +M      + P+ IT  AL+ A    G++  A+E+YK++ 
Sbjct: 227 SLVSGLCEIGRWSDAAWLLRDMMKR--GIQPNVITFTALIDAFVKVGKIMEAKELYKVMI 284

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           + ++      YT  IN     G  + A  ++  M   G  P+EV  + LI     + +VE
Sbjct: 285 QMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVE 344

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
              +I  E   +G+    I+Y+ L+           A E++  M S +  P + T N L+
Sbjct: 345 DGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLL 404

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC    + K + +   M+   +  N +TY+I++    +   VE    L       G+ 
Sbjct: 405 DGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMK 464

Query: 442 PNLVMFKCII-GMCSRRY 458
           PN++ +  +I G C R +
Sbjct: 465 PNVITYTTMISGFCRRGF 482



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 154/341 (45%), Gaps = 9/341 (2%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           RI + + L + +   G       Y      +CK+ + +  A   F  + +    P + T+
Sbjct: 167 RIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKN-RHLNHAVEIFNQMGDNGIRPNVVTY 225

Query: 96  NMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           N L+S +C   + S+ A+ +LR + + G++ +   +T LI    K GK+    E++  M+
Sbjct: 226 NSLVSGLCEIGRWSDAAW-LLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMI 284

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
              + P+V TY ALI+G    G++ +A   + +M S    P+ V +  LI    +S  V+
Sbjct: 285 QMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVE 344

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
               +  EM+ +   +  + IT   L++     G+ D A+EV+  +           Y +
Sbjct: 345 DGTKIFYEMSQK--GLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNV 402

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            ++     G  E A  ++  M K+ +  + V  + +I      GKVE AF++     ++G
Sbjct: 403 LLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKG 462

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
           +   +I+Y++++          +A  L++ MK     P  S
Sbjct: 463 MKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNES 503



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 9/201 (4%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV 62
           D  + M      NG + N     +  +H +    +  R+ +   +  +M +KGL+     
Sbjct: 309 DEARQMFYLMESNGYYPNEV-TYTTLIHGF---CKSKRVEDGTKIFYEMSQKGLVANTIT 364

Query: 63  YHARFFNVCKSQK--AIKEAFRFF--KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
           Y       C   +    +E F     +  P P + T+N+L+     +   E A  + + +
Sbjct: 365 YTVLIQGYCLVGRPDVAQEVFNQMGSRRAP-PDIRTYNVLLDGLCYNGYVEKALMIFKYM 423

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           ++  +  +   YT +I    K GKV+  F++F  + + G++PNV TY  +I G  + G +
Sbjct: 424 RKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFI 483

Query: 179 AKAFGAYGIMRSKNVKPDRVV 199
            +A   +  M+     P+  V
Sbjct: 484 HEADALFKKMKEDGFLPNESV 504


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 194/435 (44%), Gaps = 42/435 (9%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +SYN LI      G + E ++L  DME++G L  D V          + K + + F    
Sbjct: 221 YSYNILIHGLIVAGSMEEALELTNDMEKQG-LQPDMV----------TYKIVAKGFHLLG 269

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           L+                      GA +++ +++ + GLK D   YT LI    + G ++
Sbjct: 270 LMS---------------------GAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIE 308

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  +++++G + NV  Y  L+    K GQV +A      M + N++PD V ++ LI
Sbjct: 309 EALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILI 368

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G V +A  +  EM    + + P+      ++K     G +  AR  +  +   N
Sbjct: 369 HGLCKQGKVQQAIQLYKEMC--FNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSN 426

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           ++    +Y I I+   + GD E A  +Y  +  K + P  V  ++LI       KV  A 
Sbjct: 427 LRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEAR 486

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +L+  K  G+    ++Y++LM A     N  K  EL   M    ++PTV T   +I  L
Sbjct: 487 RLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGL 546

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   +L +++++L DM++ GL P+ ITY+ ++    +  D+     LL       + P  
Sbjct: 547 CKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTP 606

Query: 445 VMFKCII-GMCSRRY 458
             +  +I G+C  RY
Sbjct: 607 ATYNVLIDGLC--RY 619



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 186/415 (44%), Gaps = 11/415 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVP 88
           L ++G++ E + LL +ME   L      Y      +CK Q  +++A + +K      + P
Sbjct: 336 LCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCK-QGKVQQAIQLYKEMCFNRIFP 394

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N + +   +L  +C     S+       L+  + L+ D  LY  +I    K G V+    
Sbjct: 395 N-SFAHSGILKGLCEKGMLSDARMYFDSLIM-SNLRPDVTLYNIMIDGYVKLGDVEEAVR 452

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++  + +  I P++ T+ +LI G  K  +V +A      ++   ++P  V +  L+ A  
Sbjct: 453 LYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYC 512

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +++  ++L EMN  +  ++P  +T   ++K      +++ + ++ + +    +   
Sbjct: 513 EEGNINKLHELLLEMN--LKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPD 570

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I C  +  D   A  + DDM    + P     + LID     G VE A  +L 
Sbjct: 571 QITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLV 630

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             +++ I++  ++Y++++ A     + Q+A++++  M     + ++   +A+I  LC   
Sbjct: 631 SLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRC 690

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
            + +       M S G+ P+   + ++L A  R   V     LL+   + G++ +
Sbjct: 691 LINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLLHD 745



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 180/388 (46%), Gaps = 20/388 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P++ T+N   S+  + + ++  + V   ++++G     +  + ++   C +S   DA   
Sbjct: 116 PSIQTYN---SLLYNLRHTDIMWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDA--- 169

Query: 149 VFHEMVNAGIE--PNVHTYGALIDGCAKAG--QVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           V     N G E  P+V ++  ++    K G   VAK+F  + +M    + PD   +N LI
Sbjct: 170 VLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSF--FCMMLKYGILPDTYSYNILI 227

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKY 263
                +G+++ A ++  +M  E   + PD +T   + K     G +  ARE+  KM+   
Sbjct: 228 HGLIVAGSMEEALELTNDM--EKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDE 285

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            +K     YT+ I    Q G+ E A  +  D+   G   + +  S L+      G+V+ A
Sbjct: 286 GLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEA 345

Query: 324 FEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
            ++L E +   +   +++YS L+ G C   K  Q+A++LY+ M   ++ P     + ++ 
Sbjct: 346 LQLLYEMEANNLQPDLVTYSILIHGLCKQGK-VQQAIQLYKEMCFNRIFPNSFAHSGILK 404

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC+   L         +    L P+   Y+I++    +  DVE  + L  + ++  + P
Sbjct: 405 GLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITP 464

Query: 443 NLVMFKCII-GMC-SRRYEKARTLNEHV 468
           ++V F  +I G C +R+  +AR L E +
Sbjct: 465 SIVTFNSLIYGFCKNRKVVEARRLLESI 492


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 129/538 (23%), Positives = 223/538 (41%), Gaps = 55/538 (10%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVP-NPTLST 94
           G+  +   L+++M RKG +     Y      +C + K +++AF  F   K+V   P + T
Sbjct: 202 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATK-VEKAFLLFQEMKMVGVTPDVYT 260

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + +L+     +   E A  +   ++  G       YT LI    K+ +V    ++FH MV
Sbjct: 261 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 320

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           +AG  PN  TYGAL+DG  KAG ++KAF  Y  +                   G S + D
Sbjct: 321 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL------------------IGTSDSAD 362

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
             F    E   + H + P+ +T GAL+     A +VD A E+   +     +    VY  
Sbjct: 363 SDFYFPCE---DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDA 419

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   + G  + A  V+  MTK G +P     ++LID     G+++ A ++L +     
Sbjct: 420 LIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 479

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
            +  +++Y++++         +KAL+L   M+     P V T  ALI  L    ++  ++
Sbjct: 480 CTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSL 539

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           ++ + M   G  PN +TY +L+        ++   +LL + K+      L  ++C I   
Sbjct: 540 DLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGF 599

Query: 455 SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 514
           S+ +  +  + E + S+                         GT+P   V   ++ C   
Sbjct: 600 SKSFIASLGILEEMESY-------------------------GTVPIAPVYGMLIDCFSK 634

Query: 515 PYNADIRERLVENLGVSADALKRSN--LCSLIDG--FGEYDPRAFSLLEEAASFGIVP 568
               +I   L + +     ++K  N    SLI           AF L  E    G VP
Sbjct: 635 AGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVP 692



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 140/309 (45%), Gaps = 10/309 (3%)

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
           L +++    K D  L T +I+   ++   D      H M      PNV TY  L+ G  K
Sbjct: 30  LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 89

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
             Q+        +M ++   P+  +FN+L+ +         A+ +L  M     P  P +
Sbjct: 90  KKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCP--PGY 147

Query: 235 IT----IGAL--MKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
           +     IG++   +   +   +D A ++Y +M+    +     V   A  C    G ++ 
Sbjct: 148 VVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFA-RCLCGVGKFDK 206

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  +  +M +KG +PD    S +I F  HA KVE AF + QE K  G++  + +Y+ L+ 
Sbjct: 207 AFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILID 266

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           +   A   ++A  L+E M+S+   PTV T  ALI A     Q+P+  ++   M   G  P
Sbjct: 267 SFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRP 326

Query: 408 NTITYSILL 416
           N +TY  L+
Sbjct: 327 NDVTYGALV 335



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 168/400 (42%), Gaps = 22/400 (5%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A ++S+    Y +LI     ++        +R  L      Y A    +CK+ K +  A 
Sbjct: 341 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHK-VDHAH 399

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                + +    P    ++ L+     +   + A +V   + + G       YT+LI   
Sbjct: 400 ELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRM 459

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G++D   +V  +M+     PNV TY A+IDG  + G+  KA     +M  K   P+ 
Sbjct: 460 FKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNV 519

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V + ALI   G++G +D + D+  +M+ +     P+++T   L+     AG +D+AR + 
Sbjct: 520 VTYTALIDGLGKAGKIDLSLDLFTQMSRK--GCSPNYVTYRVLINHLCAAGLLDKARLLL 577

Query: 258 -KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS--VYDDMTKKGVIPDEVFLSALIDFA 314
            +M   Y  K     Y     C  Q     F  S  + ++M   G +P       LID  
Sbjct: 578 GEMKQTYWPK-----YLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCF 632

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIIS--YSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
             AG++E A E+ +E      SV   +  Y+SL+ A   A   ++A  LY  M      P
Sbjct: 633 SKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVP 692

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            +S    LI  L +  +  + +++       G+C   + +
Sbjct: 693 ELSVFVCLIKGLVEVKKWDEALQL-----CYGICHEGVNW 727


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 127/520 (24%), Positives = 212/520 (40%), Gaps = 69/520 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN LM     +     A  +L  +   G+  D   +TTL+    + G ++A   V
Sbjct: 87  PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 146

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M+  G      T   LI+G  K G+V  A G      +   +PD++ +N  +    Q
Sbjct: 147 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 206

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR--------------- 254
           +  V  A  V+  M  E H  DPD  T   ++      GQ++ A+               
Sbjct: 207 NDHVGHALKVMDVMVQEGH--DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 264

Query: 255 -----------------EVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDD 294
                            E   +  +  +KG +P+VYT  I IN   + GD   A  ++++
Sbjct: 265 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 324

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G  PDEV  + LID     GK+  A ++L++ ++ G     I+Y++++        
Sbjct: 325 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 384

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++A E+++ M    +     T N LI  LC   ++    E+++ M S GL PN ITY+ 
Sbjct: 385 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 444

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 473
           +L    ++ D++    +L     +G   ++V +  +I G+C                  +
Sbjct: 445 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCK-----------------A 487

Query: 474 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE-----RLVENL 528
           GR Q+       AL V R   + G  PT +  + VL  L    N  IR+     R +  +
Sbjct: 488 GRTQV-------ALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN--IRDALSLFREMAEV 538

Query: 529 GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
           G   DAL    +   +   G     AF  + E    G +P
Sbjct: 539 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIP 578



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 157/370 (42%), Gaps = 34/370 (9%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G++AD  +Y  L+    +  K+  +  V+ EM   GI+P+V T+  L+    +A QV  A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA---EMNAEVHPV-------- 230
                 M S+ V PD   F  L+    + G+++ A  V A   EM      V        
Sbjct: 109 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 168

Query: 231 ----------------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                                 +PD IT    +        V  A +V  ++ +      
Sbjct: 169 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 228

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I +NC  + G  E A  + + M  +G +PD    + LI       ++E A ++ +
Sbjct: 229 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 288

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +   +G+S  + +++ L+ A     +   AL L+E MK+    P   T N LI  LC   
Sbjct: 289 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 348

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L K +++L DM+S G   +TITY+ ++    +K  +E    +  Q    G+  N + F 
Sbjct: 349 KLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 408

Query: 449 CII-GMCSRR 457
            +I G+C  +
Sbjct: 409 TLIDGLCKDK 418



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/423 (18%), Positives = 181/423 (42%), Gaps = 8/423 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P 88
           N   + GR+ + +  ++     G  + D++ +  F N       +  A +   ++     
Sbjct: 167 NGYCKLGRVEDALGYIQQEIADGF-EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGH 225

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+N++++    +   E A  +L  + + G   D   + TLI       +++   +
Sbjct: 226 DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALD 285

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  ++   G+ P+V+T+  LI+   K G    A   +  M++    PD V +N LI    
Sbjct: 286 LARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLC 345

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G + +A D+L +M +   P     IT   ++       +++ A EV+  +    I   
Sbjct: 346 SLGKLGKALDLLKDMESTGCP--RSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 403

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +   I+   +    + A  + + M  +G+ P+ +  ++++      G ++ A +IL+
Sbjct: 404 AITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILE 463

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
                G  V +++Y +L+     A   Q AL++   M+   ++PT    N ++ +L   +
Sbjct: 464 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRN 523

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +   + +  +M  +G  P+ +TY I+    C     ++     + +  + G IP    F
Sbjct: 524 NIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSF 583

Query: 448 KCI 450
           + +
Sbjct: 584 RML 586



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 39/278 (14%)

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           ++ D VV+N L+    +   +     V +EM A    + PD +T   LMKA   A QV  
Sbjct: 50  IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGA--RGIKPDVVTFNTLMKALCRAHQV-- 105

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
                                              A  + ++M+ +GV PDE   + L+ 
Sbjct: 106 ---------------------------------RTAVLMLEEMSSRGVAPDETTFTTLMQ 132

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G +EAA  +       G S   ++ + L+         + AL   +   +   +P
Sbjct: 133 GFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEP 192

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T N  +  LC  D +   ++V+  M   G  P+  TY+I++    +   +E    +L
Sbjct: 193 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 252

Query: 433 SQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHV 468
           +Q  + G +P++  F  +I  +C+  R E+A  L   V
Sbjct: 253 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 290


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 128/523 (24%), Positives = 213/523 (40%), Gaps = 69/523 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN LM     +     A  +L  +   G+  D   +TTL+    + G ++A   V
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M+  G      T   LI+G  K G+V  A G      +   +PD++ +N  +    Q
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 298

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR--------------- 254
           +  V  A  V+  M  E H  DPD  T   ++      GQ++ A+               
Sbjct: 299 NDHVGHALKVMDVMVQEGH--DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 255 -----------------EVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDD 294
                            E   +  +  +KG +P+VYT  I IN   + GD   A  ++++
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G  PDEV  + LID     GK+  A ++L++ ++ G     I+Y++++        
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++A E+++ M    +     T N LI  LC   ++    E+++ M S GL PN ITY+ 
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 473
           +L    ++ D++    +L     +G   ++V +  +I G+C                  +
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCK-----------------A 579

Query: 474 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE-----RLVENL 528
           GR Q+       AL V R   + G  PT +  + VL  L    N  IR+     R +  +
Sbjct: 580 GRTQV-------ALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN--IRDALSLFREMAEV 630

Query: 529 GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571
           G   DAL    +   +   G     AF  + E    G +P  S
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFS 673



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 157/370 (42%), Gaps = 34/370 (9%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G++AD  +Y  L+    +  K+  +  V+ EM   GI+P+V T+  L+    +A QV  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA---EMNAEVHPV-------- 230
                 M S+ V PD   F  L+    + G+++ A  V A   EM      V        
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 231 ----------------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                                 +PD IT    +        V  A +V  ++ +      
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I +NC  + G  E A  + + M  +G +PD    + LI       ++E A ++ +
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 380

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +   +G+S  + +++ L+ A     +   AL L+E MK+    P   T N LI  LC   
Sbjct: 381 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 440

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L K +++L DM+S G   +TITY+ ++    +K  +E    +  Q    G+  N + F 
Sbjct: 441 KLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 500

Query: 449 CII-GMCSRR 457
            +I G+C  +
Sbjct: 501 TLIDGLCKDK 510



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/417 (18%), Positives = 179/417 (42%), Gaps = 8/417 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLST 94
           GR+ + +  ++     G  + D++ +  F N       +  A +   ++     +P + T
Sbjct: 265 GRVEDALGYIQQEIADGF-EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N++++    +   E A  +L  + + G   D   + TLI       +++   ++  ++ 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+ P+V+T+  LI+   K G    A   +  M++    PD V +N LI      G + 
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           +A D+L +M +   P     IT   ++       +++ A EV+  +    I      +  
Sbjct: 444 KALDLLKDMESTGCP--RSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT 501

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   +    + A  + + M  +G+ P+ +  ++++      G ++ A +IL+     G
Sbjct: 502 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
             V +++Y +L+     A   Q AL++   M+   ++PT    N ++ +L   + +   +
Sbjct: 562 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 395 EVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            +  +M  +G  P+ +TY I+    C     ++     + +  + G IP    F+ +
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 39/278 (14%)

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           ++ D VV+N L+    +   +     V +EM A    + PD +T   LMKA   A QV  
Sbjct: 142 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGA--RGIKPDVVTFNTLMKALCRAHQV-- 197

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
                                              A  + ++M+ +GV PDE   + L+ 
Sbjct: 198 ---------------------------------RTAVLMLEEMSSRGVAPDETTFTTLMQ 224

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G +EAA  +       G S   ++ + L+         + AL   +   +   +P
Sbjct: 225 GFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEP 284

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T N  +  LC  D +   ++V+  M   G  P+  TY+I++    +   +E    +L
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 344

Query: 433 SQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHV 468
           +Q  + G +P++  F  +I  +C+  R E+A  L   V
Sbjct: 345 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 167/392 (42%), Gaps = 28/392 (7%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P   V+  +I   G  GA+D    ++AEM  E H V      + + + +       D A 
Sbjct: 72  PGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLG--VVHSFLDSYEGQQLFDDAV 129

Query: 255 EVY--KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           ++   ++   + I+    VY   +N   +    +   SVY +M  +G+ PD V  + L+ 
Sbjct: 130 DLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMK 189

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               A +V  A  +L+E  ++G++    ++++LM       + + AL +   M  +    
Sbjct: 190 ALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSA 249

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           T  T+N LI   C   ++   +  +    + G  P+ ITY+  +    + D V   L ++
Sbjct: 250 TKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVM 309

Query: 433 SQAKEDGVIPNLVMFKCIIG-MCSR-RYEKAR-TLNEHV--------LSFNSGRPQI-EN 480
               ++G  P++  +  ++  +C   + E+A+  LN+ V         +FN+    +   
Sbjct: 310 DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG 369

Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE---NLGVSADALKR 537
                AL + R+  V G  P V   + ++  L    +  +  RL E   N G + D +  
Sbjct: 370 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTY 429

Query: 538 S----NLCSLIDGFGEYDPRAFSLLEEAASFG 565
           +    NLCSL    G+   +A  LL++  S G
Sbjct: 430 NTLIDNLCSL----GKLG-KALDLLKDMESTG 456


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 197/409 (48%), Gaps = 9/409 (2%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RIS+ + L++ M   G     +    + H  F +  K+ +A+    R  +    P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 228

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            ++++      D + AF +L  ++ A ++A+  +Y+T+I +  K    D    +F EM N
Sbjct: 229 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G+ PNV TY +LI       + + A      M  + + P+ V FNALI A  + G +  
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVE 348

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  +  EM      +DPD  T  +L+       ++D A+ +++++   +       Y   
Sbjct: 349 AEKLYDEMIKR--SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 406

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           IN   +    +    ++ +M+++G++ + V  + LI     A   + A  + ++  + G+
Sbjct: 407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 466

Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
              I++Y++L+ G C N K  +KA+ ++E+++  K++PT+ T N +I  +C   ++    
Sbjct: 467 HPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 525

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           ++   +   G+ P+ I Y+ ++    RK   E    L  + +EDG +P+
Sbjct: 526 DLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPD 574



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 192/449 (42%), Gaps = 46/449 (10%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF-- 81
           +  +N+L+    +  +    I L E M+R G+      Y+      C+ SQ ++  A   
Sbjct: 85  IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLG 144

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +  KL   P++ T + L++     K    A  ++  + E G + D   +TTLI       
Sbjct: 145 KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 204

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K      +   MV  G +PN+ TYG +++G  K G +  AF     M +  ++ + V+++
Sbjct: 205 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYS 264

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I +  +    D A ++  EM  E   V P+ IT                         
Sbjct: 265 TVIDSLCKYRHEDDALNLFTEM--ENKGVRPNVIT------------------------- 297

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                     Y+  I+C      W  A  +  DM ++ + P+ V  +ALID     GK+ 
Sbjct: 298 ----------YSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLV 347

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A ++  E   + I   I +YSSL+          +A  ++E M S    P V T N LI
Sbjct: 348 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 407

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
              C   ++ + +E+  +M   GL  NT+TY+ L+    +  D +   M+  Q   DGV 
Sbjct: 408 NGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVH 467

Query: 442 PNLVMFKCII-GMCSR-RYEKARTLNEHV 468
           PN++ +  ++ G+C   + EKA  + E++
Sbjct: 468 PNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 199/441 (45%), Gaps = 12/441 (2%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AI 77
           +S  L++YN LI    R+ +IS  + LL  M + G         +     C  ++   A+
Sbjct: 116 ISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 175

Query: 78  KEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
               +  ++   P   TF  L+  +   +K SE    V R+VQ  G + +   Y  ++  
Sbjct: 176 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQR-GCQPNLVTYGVVVNG 234

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G +D  F + ++M  A IE NV  Y  +ID   K      A   +  M +K V+P+
Sbjct: 235 LCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPN 294

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            + +++LI+          A  +L++M      ++P+ +T  AL+ A    G++  A ++
Sbjct: 295 VITYSSLISCLCNYERWSDASRLLSDMIER--KINPNVVTFNALIDAFVKEGKLVEAEKL 352

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           Y  + K +I      Y+  IN        + A  +++ M  K   P+ V  + LI+    
Sbjct: 353 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCK 412

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           A +++   E+ +E   +G+    ++Y++L+     A++   A  +++ M S  + P + T
Sbjct: 413 AKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMT 472

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            N L+  LC   +L K M V   ++   + P   TY+I++    +   VE G  L     
Sbjct: 473 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLS 532

Query: 437 EDGVIPNLVMFKCII-GMCSR 456
             GV P+++++  +I G C +
Sbjct: 533 LKGVKPDVIIYNTMISGFCRK 553



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 123/280 (43%), Gaps = 14/280 (5%)

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
           ++   S+ + M + G+  +    + LI+      ++  A  +L +    G    I++ SS
Sbjct: 101 FDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSS 160

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L+    + K    A+ L + M  +  +P   T   LI  L   ++  + + ++  M   G
Sbjct: 161 LLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRG 220

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKART 463
             PN +TY +++    ++ D+++   LL++ +   +  N+V++  +I  +C  R+E    
Sbjct: 221 CQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDD-A 279

Query: 464 LNEHVLSFNSG-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADI-- 520
           LN      N G RP +    + ++ +   E     +    +++ + +    + +NA I  
Sbjct: 280 LNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDA 339

Query: 521 ---RERLVENLGVSADALKRS------NLCSLIDGFGEYD 551
                +LVE   +  + +KRS         SLI+GF  +D
Sbjct: 340 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 379



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 1/123 (0%)

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +  S G   Y  ++    ++     A+ L+  M   +  P++   N L++A+    +   
Sbjct: 44  RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDL 103

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
            + +   M+ LG+  N  TY+IL+    R+  + + L LL +  + G  P++V    ++ 
Sbjct: 104 VISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLN 163

Query: 452 GMC 454
           G C
Sbjct: 164 GYC 166


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 169/370 (45%), Gaps = 7/370 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P   T++ L+S        + A ++L  ++E G++   K+YT +I+   K   V     
Sbjct: 227 HPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALS 286

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM      P+V TY  LI G  KAG++ +A+  Y  M+ ++ KPD VV N +I   G
Sbjct: 287 LFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLG 346

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN---I 265
           ++G +D    +  EM   V    P+ +T   ++KA   +    R  EV+    +     I
Sbjct: 347 KAGRLDDGLKLFEEMG--VSHCIPNVVTYNTIIKALFESK--SRVSEVFSWFERMKGSGI 402

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
             +P  Y+I I+   +T   E A  + ++M +KG  P      +LID  G A + + A E
Sbjct: 403 SPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACE 462

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + QE K    S     Y+ ++     A     A+ L++ M  +   P V   NAL++ L 
Sbjct: 463 LFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLA 522

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L + +  +  M+  G  P+  +Y+I+L    +       + +L+  K   + P+ V
Sbjct: 523 RACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAV 582

Query: 446 MFKCIIGMCS 455
            +  ++   S
Sbjct: 583 SYNTVLSALS 592



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 187/403 (46%), Gaps = 14/403 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIK--EAF 81
           +Y+ LI    + GR    I LL +M+  G+    K+Y    + FF +     A+   E  
Sbjct: 232 TYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R+  +   P + T+  L+     +   + A+     +Q    K D  +   +I    K+G
Sbjct: 292 RY--MYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAG 349

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-GQVAKAFGAYGIMRSKNVKPDRVVF 200
           ++D   ++F EM  +   PNV TY  +I    ++  +V++ F  +  M+   + P    +
Sbjct: 350 RLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTY 409

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + LI    ++  +++A  +L EM+ +  P  P      +L+ A   A + D A E+++ +
Sbjct: 410 SILIDGFCKTNRIEKAMMLLEEMDEKGFPPCP--AAYCSLIDALGKAKRYDLACELFQEL 467

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            +     +  VY + I    + G  + A +++D+M+K G  P+    +AL+     A  +
Sbjct: 468 KENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACML 527

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A   +++ +  G    I SY+ ++   +      +A+E+  +MK+  +KP   + N +
Sbjct: 528 DEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTV 587

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
           ++AL       +  E++ +M +LG   + ITYS +L A  + D
Sbjct: 588 LSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVD 630



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 324 FEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           ++++QE     I V   +  S ++    NAK   KA+ ++  +K+ K +PT    N++I 
Sbjct: 143 WKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMII 202

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            L    Q  K  E+ ++M + G C P+T+TYS L+ A  +    +  + LL++ KE+G+ 
Sbjct: 203 MLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQ 262

Query: 442 PNLVMFKCIIGM 453
           P   ++  II +
Sbjct: 263 PTAKIYTMIISL 274



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 150/379 (39%), Gaps = 45/379 (11%)

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
           AE   EV  +  DH  +  +MK   + G   + +       K N +     Y   I+C  
Sbjct: 77  AERALEVLMLRVDHWLVREVMKT--DVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLE 134

Query: 281 QTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
               +     +  +M +     V P E  LS +I   G+A  +  A  I  + K +    
Sbjct: 135 LVEQYGEMWKMIQEMVRSPICVVTPME--LSQVIRMLGNAKMIGKAITIFYQIKARKCQP 192

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEV 396
              +Y+S++    +   ++K  ELY  M +     P   T +ALI+A C   +    + +
Sbjct: 193 TAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRL 252

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L++MK  G+ P    Y++++    + D+V   L L  + +     P++  +  +I    R
Sbjct: 253 LNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELI----R 308

Query: 457 RYEKARTLNE-----HVLSFNSGRPQ--IENKWTSL---------ALMVYREAIVAGTIP 500
              KA  ++E     H +     +P   + N   +           L ++ E  V+  IP
Sbjct: 309 GLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIP 368

Query: 501 TVEVVSKVLGCLQLPYNADIR--------ERLVENLGVSADALKRSNLCSLIDGFGEYD- 551
            V   + ++  L   + +  R        ER+ +  G+S      S    LIDGF + + 
Sbjct: 369 NVVTYNTIIKAL---FESKSRVSEVFSWFERM-KGSGISPSPFTYS---ILIDGFCKTNR 421

Query: 552 -PRAFSLLEEAASFGIVPC 569
             +A  LLEE    G  PC
Sbjct: 422 IEKAMMLLEEMDEKGFPPC 440


>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 166/362 (45%), Gaps = 8/362 (2%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +T++ML+       D   AF V   + EAG++ D   Y  L+    KS ++    ++   
Sbjct: 337 NTYSMLVDGYVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGR 396

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G  P + TY  +IDG  K G V  A+     M+    +P+   +N ++    Q G 
Sbjct: 397 MKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQ 456

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +DRA  V+ EM  E+  V P+  +   LM+  A+ G++  A +  K +++   K     Y
Sbjct: 457 IDRAASVIDEM--ELAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISY 514

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              +  C + G  + A +V ++M   GV  +    + L+D     G +  A+ I+Q+ + 
Sbjct: 515 ASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMRQ 574

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G +  I SY+S + AC  A + QKA E  E MK   L+P + T   LI          K
Sbjct: 575 EGFTPDIHSYTSFVNACCKAGDMQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHPEK 634

Query: 393 TMEVLSDMKSLGLCPNTITY-----SILLVACERKDDVEVG-LMLLSQAKEDGVIPNLVM 446
            +    +MK+ GL P+   Y     S+L  A   ++ V  G L + S+  + G+  +L  
Sbjct: 635 ALICYDEMKAAGLIPDKPLYYCIVTSLLSKAAIARETVRNGVLQVTSEMVDQGMCIDLAT 694

Query: 447 FK 448
            K
Sbjct: 695 AK 696



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/507 (22%), Positives = 224/507 (44%), Gaps = 36/507 (7%)

Query: 22  AHDVSEQLHSYNRLIR--------QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           A  +   +H+YN LIR        QG +S C+   E+ME +G+      + A   +   S
Sbjct: 151 AAGIDSSVHAYNNLIRAYIMAQNLQGAVS-CV---EEMEIEGIFPNAATFSA-IISGYGS 205

Query: 74  QKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
              ++ A ++F+       N  ++ ++ ++     + + E A  ++  ++E GL+A   L
Sbjct: 206 SGNVEAAEKWFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGL 265

Query: 130 YTTLITTCAKSGKVDAMFEVFHEM---VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
           Y  L+   A+         VFH++   ++ G+ P   TYG LI+   K G++ KA     
Sbjct: 266 YNILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCK 325

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M+++ +  +R  ++ L+    Q G    AF V  +M+     ++PD +T   L+KA   
Sbjct: 326 EMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEA--GIEPDWVTYNILLKAFCK 383

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           + Q+ RA ++   +       T + Y   I+   +TGD   A     +M   G  P+   
Sbjct: 384 SRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATT 443

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            + ++      G+++ A  ++ E +  G+     SY++LM   ++      A +  + + 
Sbjct: 444 YNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVN 503

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
            I  KP + +  +L+ A C   ++   + V  +M   G+  N   ++ LL    ++ D+ 
Sbjct: 504 EITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMW 563

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQIE----- 479
               ++ + +++G  P++  +   +  C +    +KA    E  +     +P ++     
Sbjct: 564 EAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIEE-MKQQDLQPNLQTYTIL 622

Query: 480 -NKWTSL-----ALMVYREAIVAGTIP 500
            + WTS+     AL+ Y E   AG IP
Sbjct: 623 IHGWTSVSHPEKALICYDEMKAAGLIP 649



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/418 (20%), Positives = 171/418 (40%), Gaps = 36/418 (8%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K +++    FK +       + +L+       D  GA      ++ AG+ +    Y  LI
Sbjct: 106 KEVRKVVNAFKRIDKAVERDYALLIHYYGKRGDKRGARVTFEKMRAAGIDSSVHAYNNLI 165

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
                +  +        EM   GI PN  T+ A+I G   +G V  A   +    S+N  
Sbjct: 166 RAYIMAQNLQGAVSCVEEMEIEGIFPNAATFSAIISGYGSSGNVEAAEKWFQRSVSENWN 225

Query: 195 PDRVVFNALITACGQSGAVDRA------------------FDVLAEMNAEVH-------- 228
            +  +++++I A  ++G ++RA                  +++L +  A  H        
Sbjct: 226 HNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNV 285

Query: 229 ----------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
                      + P  +T G L+      G++ +A E  K +    I      Y++ ++ 
Sbjct: 286 FHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDG 345

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             Q GD+  A SV++DM++ G+ PD V  + L+     + ++  A ++L   K +G S  
Sbjct: 346 YVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPT 405

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           I +Y +++       + + A +    MK    +P  +T N ++  L    Q+ +   V+ 
Sbjct: 406 IQTYITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVID 465

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           +M+  G+ PN  +Y+ L+       ++ +    L +  E    P ++ +  ++  C +
Sbjct: 466 EMELAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCK 523


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 183/398 (45%), Gaps = 8/398 (2%)

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQV 114
           M  ++     ++C   K + E+   + L+      P++++ N+ +    S+K  E   Q+
Sbjct: 110 MKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQL 169

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
              + E+GL+ D  +Y   I    K G +    E+   M   G+ P V  Y  +I G  K
Sbjct: 170 FSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCK 229

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
             ++  A   +  M  + V P+R+ +N LI    + G ++ AF++   M  E   V+P  
Sbjct: 230 EKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVE--NVEPTI 287

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           IT  +L+     A  ++ A+ V + +  Y        YT   +   + G+ + + ++ ++
Sbjct: 288 ITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEE 347

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAK 353
             +KGV   +   S L++     G +E A E+L++    G++ VG+   + + G C    
Sbjct: 348 AVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQ-VG 406

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           +  KA    E M+++ L+P   T N+L+   C+   + +  + +  M   G+ PN  TY+
Sbjct: 407 DINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYN 466

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            L+    R    +    +L + ++ G+ PN++ + C+I
Sbjct: 467 TLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLI 504



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 130/505 (25%), Positives = 219/505 (43%), Gaps = 82/505 (16%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  +  YN +I    ++ R+ +   L ++M  + +      Y+      CK  + ++EA
Sbjct: 213 VSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQ-LEEA 271

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F   + +      PT+ TFN L++    ++  E A +VL  ++  G   D   YTTL   
Sbjct: 272 FNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDG 331

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G VDA   +  E V  G++   +T   L++   K G + KA           + P 
Sbjct: 332 HLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPV 391

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE- 255
            V FN ++    Q G +++A+  + +M  E   + P+H+T  +L+K       ++ A + 
Sbjct: 392 GVFFNTIVNGYCQVGDINKAYTTIEKM--EAVGLRPNHVTYNSLVKKFCEMKNMEEAEKC 449

Query: 256 VYKMIHK--------YNI-----------------------KG-TPEV--YTIAINCCSQ 281
           + KM+ K        YN                        KG  P V  Y   INC  +
Sbjct: 450 IKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCK 509

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI--------------- 326
             +   A  +  DM  +GV+P+    + LID +  AGK++ AF                 
Sbjct: 510 DANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVT 569

Query: 327 -------------LQEAKN-------QGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
                        + EA+N       +G+S  +I+Y+SL+   S+A N QKALELYE MK
Sbjct: 570 YNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMK 629

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              +KPT++T + LI A C  + L    ++  +M  + L P+ + Y+ L+       DV+
Sbjct: 630 KSGIKPTLNTYHRLI-AGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQ 688

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII 451
               L S  +  G+ P+ + + C+I
Sbjct: 689 KACSLHSAMEAQGIQPDKMTYNCLI 713



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 119/464 (25%), Positives = 204/464 (43%), Gaps = 48/464 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQKAIKEAFRFFKL 86
           N L R   + E   +LE+ME  G +     Y      H +  NV  S    +EA R    
Sbjct: 295 NGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQ 354

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           + + T S   +L++      + E A +VL+   E GL      + T++    + G ++  
Sbjct: 355 ILDYTCS---ILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKA 411

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           +    +M   G+ PN  TY +L+    +   + +A      M  K V P+   +N LI  
Sbjct: 412 YTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDG 471

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNI 265
            G+S   DR F +L EM  E   + P+ I+ G L+   C +A  ++    +  M+H+  +
Sbjct: 472 YGRSCLFDRCFQILEEM--EKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHR-GV 528

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
               ++Y + I+     G  + A   +D+M  + ++P  V  + LI+     GKV  A  
Sbjct: 529 VPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAEN 588

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-------- 377
           +  E   +G+S  +I+Y+SL+   S+A N QKALELYE MK   +KPT++T         
Sbjct: 589 LASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCG 648

Query: 378 --------------------------NALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
                                     NALI    +   + K   + S M++ G+ P+ +T
Sbjct: 649 KEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMT 708

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMC 454
           Y+ L++   ++  +     L++  K  G+IP    +   I+G C
Sbjct: 709 YNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHC 752



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 178/410 (43%), Gaps = 43/410 (10%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G I++    +E ME  GL      Y++     C+  K ++EA +  K +      P + T
Sbjct: 406 GDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCE-MKNMEEAEKCIKKMVEKGVLPNVET 464

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N L+     S   +  FQ+L  +++ GLK +   Y  LI    K   +     +  +MV
Sbjct: 465 YNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMV 524

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           + G+ PN   Y  LIDG   AG++  AF  +  M ++ + P  V +N LI    + G V 
Sbjct: 525 HRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVM 584

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A ++ +E+  +   +  D IT  +L+   ++AG V +A E+Y+ + K  IK T   Y  
Sbjct: 585 EAENLASEITRK--GLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHR 642

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I  C + G       +Y +M +  ++PD V  +ALI      G V              
Sbjct: 643 LIAGCGKEG-LVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDV-------------- 687

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
                                QKA  L+  M++  ++P   T N LI       ++ K  
Sbjct: 688 ---------------------QKACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVK 726

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
            +++DMK  GL P T TY IL+V   +  D +   +   +  E+G  P++
Sbjct: 727 NLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAYVWYREMFENGFTPSV 776



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 20/239 (8%)

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L+  CS +K   ++ ELY  MK   + P+V+++N  + +L    +   T+++ S++   G
Sbjct: 118 LLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESG 177

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKAR 462
           L P+   Y   + A  +  D++  + L++  K  GV P + ++  +I G+C  +R + A 
Sbjct: 178 LRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAE 237

Query: 463 TLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLG 510
            L + +L       +I   + +L            A  +     V    PT+   + +L 
Sbjct: 238 KLFDEMLDRRVAPNRI--TYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLN 295

Query: 511 CLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGI 566
            L      +  +R++E + V      R    +L DG    G  D  + +L EEA   G+
Sbjct: 296 GLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDA-SITLSEEAVRKGV 353


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/427 (26%), Positives = 200/427 (46%), Gaps = 15/427 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAF--RFFKLVPN 89
           + LI  G +++ I++ + M  KGL      Y+      CKS +A I E        +  N
Sbjct: 365 DSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFN 424

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK---ADCKLYTTLITTCAKSGKVDAM 146
               +F  ++ +  S    + A   LR V E  L+       L TTLI+   K GK    
Sbjct: 425 VNQGSFTSVICLLCSHHMFDSA---LRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKA 481

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E++ + +N G   +  T  AL+ G  +AG++ + F     +  +    DRV +N LI+ 
Sbjct: 482 VELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISG 541

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           C  +  +D AF  + EM  +   + PD+ T   L++   N  +V+ A + +    +  + 
Sbjct: 542 CCGNKKLDEAFMFMDEMVKK--GLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGM- 598

Query: 267 GTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P+VYT  + I+ C +    E    ++D+M    + P+ V  + LI     +G++  A 
Sbjct: 599 -IPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMAL 657

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+ ++ K++GIS    +Y+SL+   S     ++A  L E M+   L+P V    ALI   
Sbjct: 658 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGY 717

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
               Q+ K   +L +M S  + PN ITY++++    R  +V     LL + +E G++P+ 
Sbjct: 718 GKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDS 777

Query: 445 VMFKCII 451
           + +K  I
Sbjct: 778 ITYKEFI 784



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 192/458 (41%), Gaps = 42/458 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN-- 89
           N   + G++ E I+L   ME  G++     Y+     +  S +   EAF F  K+V    
Sbjct: 260 NAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGR-YDEAFMFKEKMVERGV 318

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PTL T+++L+     +K    A+ VL+ + E G   +  +Y  LI +  ++G ++   E
Sbjct: 319 EPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIE 378

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVA----------------------------- 179
           +   MV+ G+     TY  LI G  K+GQ                               
Sbjct: 379 IKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLC 438

Query: 180 ------KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
                  A    G M  +N+ P   +   LI+   + G   +A ++  +   +   VD  
Sbjct: 439 SHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTK 498

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T  AL+     AG+++    + K I           Y   I+ C      + A    D
Sbjct: 499 --TSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMD 556

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +M KKG+ PD    S LI    +  KVE A +   + K  G+   + +YS ++  C  A+
Sbjct: 557 EMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAE 616

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             ++  +L++ M S  L+P     N LI A C   +L   +E+  DMK  G+ PN+ TY+
Sbjct: 617 RTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYT 676

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            L+        VE   +LL + + +G+ PN+  +  +I
Sbjct: 677 SLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALI 714



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 112/506 (22%), Positives = 208/506 (41%), Gaps = 60/506 (11%)

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           EAF       +P +  F   ++        E A ++   ++EAG+  +   Y T+I    
Sbjct: 239 EAFHVVCKGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLG 298

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
            SG+ D  F    +MV  G+EP + TY  L+ G  KA ++  A+     M  K   P+ +
Sbjct: 299 MSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVI 358

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           V+N LI +  ++G++++A ++   M ++   +     T   L+K    +GQ D A  + K
Sbjct: 359 VYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSS--TYNTLIKGYCKSGQADIAERLLK 416

Query: 259 MI----------------------HKY-------------NIKGTPEVYTIAINCCSQTG 283
            +                      H +             N+     + T  I+   + G
Sbjct: 417 EMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHG 476

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
               A  ++     KG + D    +AL+     AGK+E  F I +E   +G  +  +SY+
Sbjct: 477 KHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYN 536

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +L+  C   K   +A    + M    LKP   T + LI  L + +++ + ++   D K  
Sbjct: 537 TLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRN 596

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 463
           G+ P+  TYS+++  C + +  E G  L  +   + + PN V++  +IG   R       
Sbjct: 597 GMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCR------- 649

Query: 464 LNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER 523
                    SGR        S+AL +  +    G  P     + ++  + +    +  + 
Sbjct: 650 ---------SGR-------LSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKL 693

Query: 524 LVENLGVSADALKRSNLCSLIDGFGE 549
           L+E + +        +  +LIDG+G+
Sbjct: 694 LLEEMRMEGLEPNVFHYTALIDGYGK 719



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 143/328 (43%), Gaps = 38/328 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L + G+ S+ ++L      KG L   K  +A    +C++ K ++E FR  K +       
Sbjct: 472 LCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGK-LEEGFRIQKEILGRGFVM 530

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              ++N L+S C  +K  + AF  +  + + GLK D   Y+ LI       KV+   + +
Sbjct: 531 DRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFW 590

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +    G+ P+V+TY  +IDGC KA +  +    +  M S N++P+ VV+N LI A  +S
Sbjct: 591 GDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRS 650

Query: 211 GAVDRAFDVLAEMNAE-VHP--------------------------------VDPDHITI 237
           G +  A ++  +M  + + P                                ++P+    
Sbjct: 651 GRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHY 710

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            AL+      GQ+ +   + + +H  N+      YT+ I   ++ G+   A  +  +M +
Sbjct: 711 TALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMRE 770

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           KG++PD +     I      G V  AF+
Sbjct: 771 KGIVPDSITYKEFIYGYLKQGGVLQAFK 798



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY--TIAINCCSQTGDWEFAC 289
           P   T   L+ +   A +  +  E + ++ K     +P+VY  T AIN   + G  E A 
Sbjct: 216 PSKTTCNILLTSLVRATEFQKCCEAFHVVCK---GVSPDVYLFTTAINAFCKGGKVEEAI 272

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            ++  M + GV+P+ V  + +ID  G +G+ + AF   ++   +G+   +I+YS L+   
Sbjct: 273 ELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGL 332

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
           + AK    A  + + M      P V   N LI +L +   L K +E+   M S GL   +
Sbjct: 333 TKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTS 392

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            TY+ L+    +    ++   LL +    G   N   F  +I
Sbjct: 393 STYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVI 434



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 130/299 (43%), Gaps = 21/299 (7%)

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR---AFDVLAEMNAE 226
           DGC  A  V      + ++ +K + P +   N L+T+  ++    +   AF V+ +    
Sbjct: 197 DGCYLALDV------FPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVVCK---- 246

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V PD       + A    G+V+ A E++  + +  +      Y   I+    +G ++
Sbjct: 247 --GVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYD 304

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A    + M ++GV P  +  S L+     A ++  A+ +L+E   +G    +I Y++L+
Sbjct: 305 EAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLI 364

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            +   A +  KA+E+ + M S  L  T ST N LI   C   Q      +L +M S+G  
Sbjct: 365 DSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFN 424

Query: 407 PN--TITYSILLVACERKDDVE---VGLMLL-SQAKEDGVIPNLVMFKCIIGMCSRRYE 459
            N  + T  I L+      D     VG MLL + +   G++  L+   C  G  S+  E
Sbjct: 425 VNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVE 483



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 115/261 (44%), Gaps = 3/261 (1%)

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            +VF  + N G+ P+  T   L+    +A +  K   A+ ++  K V PD  +F   I A
Sbjct: 203 LDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVV-CKGVSPDVYLFTTAINA 261

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G V+ A ++ ++M  E   V P+ +T   ++     +G+ D A    + + +  ++
Sbjct: 262 FCKGGKVEEAIELFSKM--EEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVE 319

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            T   Y+I +   ++      A  V  +MT+KG  P+ +  + LID    AG +  A EI
Sbjct: 320 PTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEI 379

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
                ++G+S+   +Y++L+     +     A  L + M SI       +  ++I  LC 
Sbjct: 380 KDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCS 439

Query: 387 GDQLPKTMEVLSDMKSLGLCP 407
                  +  + +M    + P
Sbjct: 440 HHMFDSALRFVGEMLLRNMSP 460



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 42/237 (17%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++Y+ LIR      ++ E I    D +R G++     Y       CK+++  +    F +
Sbjct: 568 YTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDE 627

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++ N   P    +N L+     S     A ++   ++  G+  +   YT+LI   +   +
Sbjct: 628 MMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISR 687

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA--------------------- 181
           V+    +  EM   G+EPNV  Y ALIDG  K GQ+ K                      
Sbjct: 688 VEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTV 747

Query: 182 -FGAYGI-------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
             G Y               MR K + PD + +   I    + G V +AF    E N
Sbjct: 748 MIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQAFKGSDEEN 804


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 153/331 (46%), Gaps = 9/331 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   TF +L+     S   E A ++L  ++E G   D  +Y  LI+  +K+      F+
Sbjct: 39  QPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFK 98

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EMV     P V TY  ++DG  KA +   A      MR K   P+   +N ++    
Sbjct: 99  FLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLC 158

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +D A  +L EM   V    PD +T  + +K      +VD AR   K + +  +  T
Sbjct: 159 EERKLDEAKKMLEEM--AVRGYFPDVVTYNSFIKGLCKCDRVDEAR---KFLARMPV--T 211

Query: 269 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+V  YT  IN   ++GD + A  + D M+ +G  PD V  S+LID     G+VE A  +
Sbjct: 212 PDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGL 271

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L      G    +++Y+SL+GA     +  KA ++   M+     P V + NA I  LC 
Sbjct: 272 LDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCK 331

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
            +++ K   V   M   G  PN  +YS+L+V
Sbjct: 332 AERVKKAKAVFDRMVERGCTPNASSYSMLIV 362



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 186/424 (43%), Gaps = 41/424 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L +  R  + + LL++M  KG       Y+     +C+ +K + EA +  + +      P
Sbjct: 122 LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERK-LDEAKKMLEEMAVRGYFP 180

Query: 91  TLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            + T+N  +  +C   +  E      + +    +  D   YTT+I    KSG +D+   +
Sbjct: 181 DVVTYNSFIKGLCKCDRVDEAR----KFLARMPVTPDVVSYTTVINGLCKSGDLDSASRM 236

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M N G  P+V TY +LIDG  K G+V +A G    M     +P+ V +N+L+ A  +
Sbjct: 237 LDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHR 296

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGT 268
            G + +A D+L EM  E     PD ++  A +     A +V +A+ V+ +M+ +     T
Sbjct: 297 LGHIGKAEDMLVEM--ERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVER---GCT 351

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P   + ++                       +I D +  + L+D     G+ + A  +  
Sbjct: 352 PNASSYSM-----------------------LIVDILLYTVLLDGLCKGGRFDEACALFS 388

Query: 329 EAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +  ++ I    +  Y+ ++ +    +   KAL++++ M   K    V T N L+  LC  
Sbjct: 389 KVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLE-KNCCNVVTWNILVHGLCVD 447

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           D+L     +L  M   G  P+ +TY  L+ A  +       L L  +A + G +P++V +
Sbjct: 448 DRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTY 507

Query: 448 KCII 451
             +I
Sbjct: 508 SALI 511



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 154/353 (43%), Gaps = 48/353 (13%)

Query: 157 GIEPNVHTYGA-----------------------------------LIDGCAKAGQVAKA 181
           G E NV TY                                     L+ G  ++ Q+ KA
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
               G M+     PD  ++NALI+   ++    +AF  LAEM  + H + P  +T   ++
Sbjct: 62  RKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEM-VKNHCL-PTVVTYTNIV 119

Query: 242 KACANAGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKK 298
                A   +R R+  K++ +   KG +P +YT  + +    +    + A  + ++M  +
Sbjct: 120 DGLCKA---ERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVR 176

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G  PD V  ++ I       +V+ A + L       ++  ++SY++++     + +   A
Sbjct: 177 GYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSA 233

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
             + +HM +    P V T ++LI   C G ++ + M +L  M  LG  PN + Y+ LL A
Sbjct: 234 SRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGA 293

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMC-SRRYEKARTLNEHVL 469
             R   +     +L + +  G  P++V +  CI G+C + R +KA+ + + ++
Sbjct: 294 LHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMV 346



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/427 (18%), Positives = 174/427 (40%), Gaps = 41/427 (9%)

Query: 26  SEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  +++YN ++     + ++ E   +LE+M  +G       Y++    +CK  + + EA 
Sbjct: 144 SPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDR-VDEAR 202

Query: 82  RFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +F   +P  P + ++  +++    S D + A ++L  +   G   D   Y++LI    K 
Sbjct: 203 KFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKG 262

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+V+    +   M+  G  PN+  Y +L+    + G + KA      M  +   PD V +
Sbjct: 263 GEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSY 322

Query: 201 NALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           NA I    ++  V +A   FD + E     +      + +  L+                
Sbjct: 323 NACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILL---------------- 366

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGH 316
                         YT+ ++   + G ++ AC+++  +  + +  PD  F + ++D    
Sbjct: 367 --------------YTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCK 412

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
             +++ A +I ++   +     +++++ L+           A  +   M      P   T
Sbjct: 413 RRQIDKALQIHKQMLEKN-CCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVT 471

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
              L+ A+C   +    +E+  +    G  P+ +TYS L+     ++  E   +L ++  
Sbjct: 472 YGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLV 531

Query: 437 EDGVIPN 443
           E   +P+
Sbjct: 532 ERRWVPD 538


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 164/332 (49%), Gaps = 9/332 (2%)

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID---GCAKAGQVAKAFGA 184
           +LY  +I    +S  +D+    F+EMV+ G  P  + +  L+    G +   Q  + F  
Sbjct: 95  RLYEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNE 154

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
             I     V  D   F  +I  C ++G ++++FD+L E+        P+ +    L+  C
Sbjct: 155 SKI----KVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELRE--FGFSPNVVIYTTLIDGC 208

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
              G++++A++++  + K+ +      YT+ I+   + G  +    +Y+ M + GV P+ 
Sbjct: 209 CKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNL 268

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
              + +++     G+ + AF++  E + +G+S  I++Y++L+G         +A ++ + 
Sbjct: 269 YTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQ 328

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           MKS  + P + T N LI   C   +L K + +  D+KS GL P+ +TY+IL+    +K D
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGD 388

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
                 ++ + +E G+ P+ + +  +I   +R
Sbjct: 389 TSGAGKVVKEMEERGIKPSKITYTILIDTFAR 420



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 188/432 (43%), Gaps = 7/432 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVPN 89
           N  ++   +   I    +M  KG +     ++     V  S  +  + +RFF   K+  +
Sbjct: 102 NAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSS-SFNQWWRFFNESKIKVD 160

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
             + +F +++  C  + + E +F +L  ++E G   +  +YTTLI  C K G+++   ++
Sbjct: 161 LDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDL 220

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   G+  N  TY  LI G  K G   + F  Y  M+   V P+   +N ++    +
Sbjct: 221 FFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCK 280

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G    AF +  EM      V  + +T   L+       + + A +V   +    I    
Sbjct: 281 DGRTKDAFKLFDEMRE--RGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNL 338

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I+     G    A S+  D+  +G+ P  V  + L+      G    A ++++E
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKE 398

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            + +GI    I+Y+ L+   +   N +KA++L   M+ + L P V T + LI   C   Q
Sbjct: 399 MEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQ 458

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +   +   M +  L PN + Y+ +++   ++      L L  + +E  + PN+  ++ 
Sbjct: 459 MNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRY 518

Query: 450 IIG-MCSRRYEK 460
           +I  +C  R  K
Sbjct: 519 MIEVLCKERKSK 530



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 157/358 (43%), Gaps = 15/358 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVY----HARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           ++G I +  DL  +M + GL+  +  Y    H  F N  K     K+ F  ++ +     
Sbjct: 210 KRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIK-----KQGFEMYEKMQEDGV 264

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+N +M+       ++ AF++   ++E G+  +   Y TLI    +  K +   +
Sbjct: 265 FPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANK 324

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  +M + GI PN+ TY  LIDG    G++ KA      ++S+ + P  V +N L++   
Sbjct: 325 VMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFC 384

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G    A  V+ EM  E   + P  IT   L+   A    +++A ++   + +  +   
Sbjct: 385 KKGDTSGAGKVVKEM--EERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPD 442

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y++ I+     G    A  ++  M  K + P++V  + ++      G    A  + +
Sbjct: 443 VHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFR 502

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           E + + +   + SY  ++      +  ++A  L E M    + P+ S +N +  A  D
Sbjct: 503 EMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLISRAKND 560



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 107/212 (50%), Gaps = 7/212 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAI 77
           VS  + +YN LI    R+ + +E   +++ M+  G+      Y+     F  V K  KA+
Sbjct: 299 VSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                      +P+L T+N+L+S      D+ GA +V++ ++E G+K     YT LI T 
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTF 418

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
           A+   ++   ++   M   G+ P+VHTY  LI G    GQ+ +A   + +M +K ++P++
Sbjct: 419 ARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNK 478

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
           V++N ++    + G+  RA  +  EM  +  P
Sbjct: 479 VIYNTMVLGYCKEGSSYRALRLFREMEEKELP 510


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 203/461 (44%), Gaps = 70/461 (15%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-- 85
           YN LI    R+GR  E   L+E M   GL      +++R   +C + K I EA R F+  
Sbjct: 224 YNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGK-ILEASRIFRDM 282

Query: 86  ------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                  +P P ++TFN+++         E A  ++  ++  G   + + Y   +    +
Sbjct: 283 QIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVR 342

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +GK+        EMV+ GIEPN++++  ++DG  K G ++ A    G+M S  + PD V 
Sbjct: 343 NGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVT 402

Query: 200 FNALITACGQSGAVDRAFDVLAEM------------NAEVHPV----------------- 230
           ++ L+  C  +G V +A ++L EM            N  +H +                 
Sbjct: 403 YSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMN 462

Query: 231 ----DPDHITIGALMKACANAGQVDRAREVYK--MIHKYNIKGT---------------- 268
               D D++T   ++     +G++D A E+ +   IH     G                 
Sbjct: 463 ERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGK 522

Query: 269 ---PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
              P++  Y+I IN   + G  + A   + +M  K + PD +     I      GK+ +A
Sbjct: 523 KCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSA 582

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           F +L++ + +G +  + +Y+SL+    +     +   L + MK   + P + T N +I+ 
Sbjct: 583 FRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISC 642

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKD 423
           LC+G ++     +L +M   G+ PN  ++ +L+ A C+  D
Sbjct: 643 LCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASD 683



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 163/385 (42%), Gaps = 24/385 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           ++G + E   L+E M+R G L   + Y+     + ++ K ++      ++V     P + 
Sbjct: 307 KEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIY 366

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +FN +M     +     A  ++ L+  +G+  D   Y+TL+  C  +GKV     + HEM
Sbjct: 367 SFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEM 426

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +  G  PN +T   L+    K G++ +A      M  ++   D V  N +I    +SG +
Sbjct: 427 MRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKL 486

Query: 214 DRAFDVLAEM------------NAEVHPVD---------PDHITIGALMKACANAGQVDR 252
           D A +++  M            N+ +  VD         PD IT   ++     AG++D 
Sbjct: 487 DEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDE 546

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           AR+ +  +   ++     +Y   I+   + G    A  V  DM K+G        ++LI 
Sbjct: 547 ARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLIL 606

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
             G   ++   + +L + K +GI+  I +Y++++         + A  L + M    + P
Sbjct: 607 GLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISP 666

Query: 373 TVSTMNALITALCDGDQLPKTMEVL 397
            +S+   LI A C         EV 
Sbjct: 667 NISSFRLLIKAFCKASDFGVVKEVF 691



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 168/379 (44%), Gaps = 25/379 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +NM++         +    + + +  AG+  +      LI     SG+ +   EV
Sbjct: 114 PPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLLIAGLCDSGRFEDAREV 173

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M   G  PN  ++G L+ G  +AG   +A      M S  V+P++V++N LI++  +
Sbjct: 174 FDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCR 233

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  + A  ++  M  +   + PD +T  + + A  +AG++  A  +++ +      G P
Sbjct: 234 EGRNEEAERLVERMRED--GLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLP 291

Query: 270 E----VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVE 321
                 + + +    + G  E A ++ + M + G + +     ++L  L+      GK+ 
Sbjct: 292 RPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLV----RNGKLL 347

Query: 322 AAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            A   L+E  ++GI   I S++++M G C N      A  +   M S  + P   T + L
Sbjct: 348 EAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGL-ISDARMIMGLMISSGIGPDTVTYSTL 406

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE--- 437
           +   C   ++ K   +L +M   G  PNT T +ILL +  ++  +     LL +  E   
Sbjct: 407 LHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSY 466

Query: 438 --DGVIPNLVMFKCIIGMC 454
             D V  N+V    I G+C
Sbjct: 467 DLDNVTCNIV----IDGLC 481



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 149/331 (45%), Gaps = 25/331 (7%)

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMI 260
           ALI    +SG  D AF       ++V P +P  + +   ++++     +VD    +YK +
Sbjct: 84  ALIRILAKSGLSDLAFSQFQSFRSQV-PANPPPVYLYNMVLESSLREDKVDSFSWLYKDM 142

Query: 261 HKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
               +  +PE YT+   I     +G +E A  V+D M  KG  P+E     L+     AG
Sbjct: 143 VVAGV--SPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAG 200

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTM 377
               A E+L    + G+    + Y++L+ + C   +N ++A  L E M+   L P V T 
Sbjct: 201 LSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRN-EEAERLVERMREDGLFPDVVTF 259

Query: 378 NALITALCDGDQLPKTMEVLSDMK---SLGLC-PNTITYSILLVACERKDDVEVGLMLLS 433
           N+ I+ALC   ++ +   +  DM+    LGL  PN  T++++L    ++  +E    L+ 
Sbjct: 260 NSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVE 319

Query: 434 QAKEDGVIPNLVMFK-CIIGMC--SRRYEKARTLNE--------HVLSFNSGRPQI-ENK 481
             K +G +  L  +   ++G+    +  E    L E        ++ SFN+    + +N 
Sbjct: 320 SMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNG 379

Query: 482 WTSLALMVYREAIVAGTIPTVEVVSKVL-GC 511
             S A M+    I +G  P     S +L GC
Sbjct: 380 LISDARMIMGLMISSGIGPDTVTYSTLLHGC 410



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 137/330 (41%), Gaps = 2/330 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P   T N+L++    S   E A +V   +   G + +   +  L+    ++G      E
Sbjct: 148 SPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALE 207

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M + G++PN   Y  LI    + G+  +A      MR   + PD V FN+ I+A  
Sbjct: 208 LLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALC 267

Query: 209 QSGAVDRAFDVLAEM--NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            +G +  A  +  +M  + E+    P+  T   +++     G ++ A+ + + + +    
Sbjct: 268 SAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNL 327

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
              E Y I +    + G    A     +M  KG+ P+    + ++D     G +  A  I
Sbjct: 328 MELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMI 387

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +    + GI    ++YS+L+  C +     KA  +   M      P   T N L+ +L  
Sbjct: 388 MGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWK 447

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
             ++ +  ++L  M       + +T +I++
Sbjct: 448 EGRIFEAEKLLQKMNERSYDLDNVTCNIVI 477



 Score = 38.5 bits (88), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 19/209 (9%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           ++ L +YN LI     + +I E   LL+DM+ KG+      Y+     +C+  + IK+A 
Sbjct: 595 NKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGR-IKDAT 653

Query: 82  RFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTL 133
                +     +P +S+F +L+     + D    F V++ V E  L   C     LY+ +
Sbjct: 654 SLLDEMLQKGISPNISSFRLLIKAFCKASD----FGVVKEVFEIALSI-CGHKEALYSLM 708

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
                  G+V    E+F   ++   +     Y  LI+   K   +  A      M  K  
Sbjct: 709 FNELLIGGEVSEAKELFDAALDRCFDLGNFQYNDLIEKLCKDEMLENASDILHKMIDKGY 768

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAE 222
           + D   F  +I   G+ G    A D LAE
Sbjct: 769 RFDPASFMPVIDGLGKRGKKHDA-DELAE 796


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 181/417 (43%), Gaps = 42/417 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N+L+     +   + A ++   +   G   D   YTT++++  K+GK+D   E+
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236

Query: 150 FHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
                 AG  +P+V  Y ALIDG  K G++  A    G M    V P+ V ++ +I +  
Sbjct: 237 ------AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLC 290

Query: 209 QSGAVDRAFDVLAEM-----NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
            SG V+ AF + A+M     +A +H   P       L+K C   G++  A +++K++ + 
Sbjct: 291 VSGNVELAFALFAQMFLRGCDANIHTFTP-------LIKGCFMRGKLYEALDLWKLMIQD 343

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             +     Y   I+     G  E A  V D M + G +P+    S LID    +G +  A
Sbjct: 344 GCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGA 403

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E      + G    +++Y+ ++        + +A  L E M      P   T N  I  
Sbjct: 404 SETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKG 463

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++   M++L  M+  G  PN  TY+ LL A  R +  E    L  + +   + PN
Sbjct: 464 LCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPN 523

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 500
           LV +  ++      + +A  + E                   AL ++ +A+V GT P
Sbjct: 524 LVTYNTVL----YGFSRAGMMGE-------------------ALQLFGKALVRGTAP 557



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 105/488 (21%), Positives = 205/488 (42%), Gaps = 55/488 (11%)

Query: 10  QFPYPNGKHANYAHD-VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYH 64
           +F   N  + N   D +   + +YN L++      R+     L  +M  KG       Y 
Sbjct: 159 KFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYT 218

Query: 65  ARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
               ++CK+ K   A + A RF      P++  +N L+         E A ++L  + + 
Sbjct: 219 TMVSSLCKAGKIDDARELAGRF-----KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDN 273

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G+  +   Y+ +I +   SG V+  F +F +M   G + N+HT+  LI GC   G++ +A
Sbjct: 274 GVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEA 333

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              + +M     +P+ V +N LI     +G+++ A  V  +M  +     P+  T   L+
Sbjct: 334 LDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM--QRSGCLPNVTTYSILI 391

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
              A +G +  A E +  +  +  +     YT  ++   +   ++ A S+ + MT +G  
Sbjct: 392 DGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P+ +  +  I      G+VE A ++L+  +  G    I +Y+ L+ A      +++A  L
Sbjct: 452 PNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGL 511

Query: 362 YEHMKSIKLKPTVSTMNA-----------------------------------LITALCD 386
           ++ +++  L+P + T N                                    +I A C 
Sbjct: 512 FQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCK 571

Query: 387 GDQL---PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
             ++    + +E +S MK     P+ ITY+ L+       ++E  +  L +A   G+ PN
Sbjct: 572 QGKVKIAAQLVERVSSMKEWH--PDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPN 629

Query: 444 LVMFKCII 451
              +  ++
Sbjct: 630 FATWNALV 637



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 144/339 (42%), Gaps = 7/339 (2%)

Query: 71  CKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           C  +  + EA   +KL+      P +  +N L+    S+   E A QV   +Q +G   +
Sbjct: 324 CFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPN 383

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y+ LI   AKSG +    E ++ M++ G  PNV TY  ++D   K     +A     
Sbjct: 384 VTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVE 443

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M  +   P+ + FN  I     +G V+ A  +L  M    H   P+  T   L+ A   
Sbjct: 444 KMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQG--HGCLPNITTYNELLDALFR 501

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
             + + A  +++ I   N++     Y   +   S+ G    A  ++     +G  PD + 
Sbjct: 502 MNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSIT 561

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
            + +I      GKV+ A ++++   + +     II+Y+SL+    N  N ++A+   +  
Sbjct: 562 YNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKA 621

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
            +  + P  +T NAL+    D       + +L D+   G
Sbjct: 622 INQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 30/214 (14%)

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   Y + I    +  + +    +   M   G+   E     +I+     G  E A ++ 
Sbjct: 73  TASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMF 132

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                 G    +  Y+ L+ A  +   +Q    LY +MK   L P V T N L+ ALC  
Sbjct: 133 YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKN 192

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDD-------------------- 424
           D++    ++  +M + G  P+ +TY+ +   L    + DD                    
Sbjct: 193 DRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALID 252

Query: 425 -------VEVGLMLLSQAKEDGVIPNLVMFKCII 451
                  +EV + LL +  ++GV PN+V + CII
Sbjct: 253 GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCII 286


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 201/456 (44%), Gaps = 42/456 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L +  RIS+   +LEDM   G       Y+      CK     +    F +++ N   P 
Sbjct: 246 LCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPD 305

Query: 92  LSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           + T+N+L+   C   +  +GA ++L+ + + G + +   Y TL+ +  KSGK    F + 
Sbjct: 306 VFTYNILIDGYCKQERPQDGA-KLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLA 364

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M+    +P+  T+  +ID   K GQ+  A+  + +M  +   PD   +N +I+   ++
Sbjct: 365 QMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRA 424

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------- 257
             +D A  +L  M     P  PD +T  +++     A QVD A EVY             
Sbjct: 425 NRIDDARQLLERMTEAGCP--PDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVV 482

Query: 258 -------------------KMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDM 295
                              K++ +    G+ P+V  YTI I+   +    + + + + +M
Sbjct: 483 TCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEM 542

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             KG +P  +  S +ID    + +V     +L+    +G++   I Y+S++     + ++
Sbjct: 543 LDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSY 602

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +A ELY+ MK     PTV T N L+  LC   +L + + +L  M+S G  P+T+TY+ +
Sbjct: 603 DEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSV 662

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                +  + +    L    K  G  P   M+  ++
Sbjct: 663 FDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLL 698



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 197/427 (46%), Gaps = 20/427 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN---- 89
            +R+ +  E  DL ++  R GL   D + ++   N  CK+ +  ++A+R    +      
Sbjct: 142 FVRKKKAQEAYDLFKN-HRCGLCSPDSITYSTLINGFCKA-RDFQQAYRLLDEMEKRGIV 199

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDA 145
           P  + +N ++     +   + A     LV    ++ +C      YT L+    KS ++  
Sbjct: 200 PHNAVYNTIIKGLCDNGRVDSA-----LVHYRDMQRNCAPSVITYTILVDALCKSARISD 254

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              +  +M+ AG  PNV TY  LI+G  K G + +A   +  M   +  PD   +N LI 
Sbjct: 255 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 314

Query: 206 A-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
             C Q    D A  +L EM    +  +P+ IT   LM +   +G+   A  + +M+ + +
Sbjct: 315 GYCKQERPQDGA-KLLQEMVK--YGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRD 371

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            K +   + + I+   + G  + A  ++  MT +G +PD    + +I  A  A +++ A 
Sbjct: 372 CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDAR 431

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++L+     G    +++Y+S++     A    +A E+YE +++      V T + LI  L
Sbjct: 432 QLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGL 491

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   +L    ++L +M+  G  P+ + Y+IL+    + D ++  L   S+  + G +P +
Sbjct: 492 CKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTV 551

Query: 445 VMFKCII 451
           + +  +I
Sbjct: 552 ITYSIVI 558



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 192/422 (45%), Gaps = 11/422 (2%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN LI    +Q R  +   LL++M + G       Y+    ++ KS K I +AF
Sbjct: 303 SPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYI-DAF 361

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              +++      P+  TFN+++ +       + A+++ +L+ + G   D   Y  +I+  
Sbjct: 362 NLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGA 421

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            ++ ++D   ++   M  AG  P+V TY +++ G  KA QV +A+  Y ++R+     D 
Sbjct: 422 CRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDV 481

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V  + LI    +S  +D A  +L EM  E +   PD +    L+     A Q+D++   +
Sbjct: 482 VTCSTLIDGLCKSRRLDDAEKLLREM--ERNGSAPDVVAYTILIHGFCKADQLDKSLAFF 539

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             +       T   Y+I I+   ++      C +   M ++GV PD +  +++ID    +
Sbjct: 540 SEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKS 599

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
              + A+E+ +  K  G +  +++Y+ L+          +A+ L E M+S    P   T 
Sbjct: 600 DSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTY 659

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N++        +  K   +   MKS G  P    YS+LL     ++ ++  + +  +A E
Sbjct: 660 NSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALE 719

Query: 438 DG 439
            G
Sbjct: 720 AG 721



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 134/323 (41%), Gaps = 4/323 (1%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L++   +  K    +++F         P+  TY  LI+G  KA    +A+     M  + 
Sbjct: 138 LLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 197

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + P   V+N +I     +G VD A     +M        P  IT   L+ A   + ++  
Sbjct: 198 IVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCA---PSVITYTILVDALCKSARISD 254

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A  + + + +         Y   IN   + G+ + A  +++ M +    PD    + LID
Sbjct: 255 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 314

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                 + +   ++LQE    G     I+Y++LM +   +  +  A  L + M     KP
Sbjct: 315 GYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKP 374

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           +  T N +I   C   QL    E+   M   G  P+  TY+I++    R + ++    LL
Sbjct: 375 SHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLL 434

Query: 433 SQAKEDGVIPNLVMFKCII-GMC 454
            +  E G  P++V +  I+ G+C
Sbjct: 435 ERMTEAGCPPDVVTYNSIVSGLC 457



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 7/259 (2%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           ++  Y  DV       + L +  R+ +   LL +MER G       Y       CK+ + 
Sbjct: 473 RNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQL 532

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            K    F +++     PT+ T+++++  +C S++  +G   +L+ + E G+  D  +YT+
Sbjct: 533 DKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCM-LLKTMLERGVTPDAIVYTS 591

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           +I    KS   D  +E++  M   G  P V TY  L+D   K  ++ +A     +M S  
Sbjct: 592 VIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDG 651

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
             PD V +N++     +S   D+AF +   M +      P       L+       ++D+
Sbjct: 652 CLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKS--RGCSPTPFMYSLLLTKLVAEEKMDQ 709

Query: 253 AREVYKMIHKYNIKGTPEV 271
           A E+++   +      PE+
Sbjct: 710 AMEIWEEALEAGADVDPEI 728



 Score = 39.7 bits (91), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           ++L +  R+ E I LLE ME  G L     Y++ F    KS +  K AFR F+ + +   
Sbjct: 629 DKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDK-AFRLFQAMKSRGC 687

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            PT   +++L++   + +  + A ++     EAG   D ++  TL
Sbjct: 688 SPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRTL 732


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 128/523 (24%), Positives = 213/523 (40%), Gaps = 69/523 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN LM     +     A  +L  +   G+  D   +TTL+    + G ++A   V
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M+  G      T   LI+G  K G+V  A G      +   +PD++ +N  +    Q
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 298

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR--------------- 254
           +  V  A  V+  M  E H  DPD  T   ++      GQ++ A+               
Sbjct: 299 NDHVGHALKVMDVMVQEGH--DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 255 -----------------EVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDD 294
                            E   +  +  +KG +P+VYT  I IN   + GD   A  ++++
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G  PDEV  + LID     GK+  A ++L++ ++ G     I+Y++++        
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++A E+++ M    +     T N LI  LC   ++    E+++ M S GL PN ITY+ 
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNS 536

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 473
           +L    ++ D++    +L     +G   ++V +  +I G+C                  +
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCK-----------------A 579

Query: 474 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE-----RLVENL 528
           GR Q+       AL V R   + G  PT +  + VL  L    N  IR+     R +  +
Sbjct: 580 GRTQV-------ALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN--IRDALSLFREMAEV 630

Query: 529 GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571
           G   DAL    +   +   G     AF  + E    G +P  S
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFS 673



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 157/370 (42%), Gaps = 34/370 (9%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G++AD  +Y  L+    +  K+  +  V+ EM   GI+P+V T+  L+    +A QV  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA---EMNAEVHPV-------- 230
                 M S+ V PD   F  L+    + G+++ A  V A   EM      V        
Sbjct: 201 VIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 231 ----------------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                                 +PD IT    +        V  A +V  ++ +      
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I +NC  + G  E A  + + M  +G +PD    + LI       ++E A ++ +
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 380

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +   +G+S  + +++ L+ A     +   AL L+E MK+    P   T N LI  LC   
Sbjct: 381 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 440

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L K +++L DM+S G   +TITY+ ++    +K  +E    +  Q    G+  N + F 
Sbjct: 441 KLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 500

Query: 449 CII-GMCSRR 457
            +I G+C  +
Sbjct: 501 TLIDGLCKDK 510



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/417 (18%), Positives = 179/417 (42%), Gaps = 8/417 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLST 94
           GR+ + +  ++     G  + D++ +  F N       +  A +   ++     +P + T
Sbjct: 265 GRVEDALGYIQQEIADGF-EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N++++    +   E A  +L  + + G   D   + TLI       +++   ++  ++ 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+ P+V+T+  LI+   K G    A   +  M++    PD V +N LI      G + 
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           +A D+L +M +   P     IT   ++       +++ A EV+  +    I      +  
Sbjct: 444 KALDLLKDMESTGCP--RSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT 501

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   +    + A  + + M  +G+ P+ +  ++++      G ++ A +IL+     G
Sbjct: 502 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
             V +++Y +L+     A   Q AL++   M+   ++PT    N ++ +L   + +   +
Sbjct: 562 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 395 EVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            +  +M  +G  P+ +TY I+    C     ++     + +  + G IP    F+ +
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 39/278 (14%)

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           ++ D VV+N L+    +   +     V +EM A    + PD +T   LMKA   A QV  
Sbjct: 142 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGA--RGIKPDVVTFNTLMKALCRAHQV-- 197

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
                                              A  + ++M+ +GV PDE   + L+ 
Sbjct: 198 ---------------------------------RTAVIMLEEMSSRGVAPDETTFTTLMQ 224

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G +EAA  +       G S   ++ + L+         + AL   +   +   +P
Sbjct: 225 GFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEP 284

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T N  +  LC  D +   ++V+  M   G  P+  TY+I++    +   +E    +L
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 344

Query: 433 SQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHV 468
           +Q  + G +P++  F  +I  +C+  R E+A  L   V
Sbjct: 345 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 167/392 (42%), Gaps = 28/392 (7%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P   V+  +I   G  GA+D    ++AEM  E H V      + + + +       D A 
Sbjct: 72  PGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLG--VVHSFLDSYEGQQLFDDAV 129

Query: 255 EVY--KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           ++   ++   + I+    VY   +N   +    +   SVY +M  +G+ PD V  + L+ 
Sbjct: 130 DLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMK 189

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               A +V  A  +L+E  ++G++    ++++LM       + + AL +   M  +    
Sbjct: 190 ALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSA 249

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           T  T+N LI   C   ++   +  +    + G  P+ ITY+  +    + D V   L ++
Sbjct: 250 TKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVM 309

Query: 433 SQAKEDGVIPNLVMFKCIIG-MCSR-RYEKAR-TLNEHV--------LSFNSGRPQI-EN 480
               ++G  P++  +  ++  +C   + E+A+  LN+ V         +FN+    +   
Sbjct: 310 DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG 369

Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE---NLGVSADALKR 537
                AL + R+  V G  P V   + ++  L    +  +  RL E   N G + D +  
Sbjct: 370 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTY 429

Query: 538 S----NLCSLIDGFGEYDPRAFSLLEEAASFG 565
           +    NLCSL    G+   +A  LL++  S G
Sbjct: 430 NTLIDNLCSL----GKLG-KALDLLKDMESTG 456


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/462 (23%), Positives = 196/462 (42%), Gaps = 44/462 (9%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---K 85
           LH Y    ++GR    I+LL+ M  KG+      Y+    ++C+S ++ K         K
Sbjct: 235 LHWY---CKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRK 291

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
            + +P   T+N L++  ++      A Q+L  +   GL  +   +  LI      G    
Sbjct: 292 RMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKE 351

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++FH M   G+     +YG L+DG  K  +   A G Y  M+   V   R+ +  +I 
Sbjct: 352 ALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMID 411

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              ++G +D A  +L EM+ +   +DPD +T  AL+      G++  A+E+   I++  +
Sbjct: 412 GLCKNGFLDEAVVMLNEMSKD--GIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGL 469

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                +Y+  I  C + G  +    +Y+ M  +G  PD    + L+     AGKV  A E
Sbjct: 470 SPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEE 529

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-------- 377
            ++   + GI    +S+  L+    ++    KA  +++ M  +   PT  T         
Sbjct: 530 FMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLC 589

Query: 378 ---------------------------NALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
                                      N LITA+C    L K + +  +M    + P++ 
Sbjct: 590 KGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSF 649

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDG-VIPNLVMFKCII 451
           TY+ L+    RK    + ++   +A+  G ++PN VM+ C +
Sbjct: 650 TYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFV 691



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 163/362 (45%), Gaps = 2/362 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P ++TFN+L++V  +    + +  +++ ++++G       Y T++    K G+  A  E+
Sbjct: 191 PDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M   G+  +V TY  LI    ++ + AK +     MR + + P+ V +N L+     
Sbjct: 251 LDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSN 310

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V  A  +L EM      + P+H+T  AL+    + G    A +++ M+    + GT 
Sbjct: 311 EGKVLIARQLLNEM--LTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTE 368

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y + ++   +  +++ A   Y  M + GV    +  + +ID     G ++ A  +L E
Sbjct: 369 VSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNE 428

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI   I++YS+L+         + A E+   +  + L P     + LI   C    
Sbjct: 429 MSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGC 488

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L +T+ +   M   G  P+  T+++L+ +  +   V      +     DG++PN V F C
Sbjct: 489 LKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDC 548

Query: 450 II 451
           +I
Sbjct: 549 LI 550



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/424 (20%), Positives = 185/424 (43%), Gaps = 10/424 (2%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI------KEAFRFFKLVP 88
            + + G + + + L  +M ++ +L     Y +    +C+  K +      KEA     LVP
Sbjct: 623  MCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVP 682

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            N  + T    +     +   +  F   + + + GL  D      +I   ++ GK++   +
Sbjct: 683  NKVMYT--CFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHD 740

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            +  EM N    PN+ TY  L+ G +K   V+ +F  Y  M    + PD++   ++I    
Sbjct: 741  LLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGIC 800

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +S  ++    +L         V+ D  T   L+  C   G+++ A ++  ++    I   
Sbjct: 801  ESNMLEIGLKILKAFICR--GVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLD 858

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
                   ++  ++   ++ +  V  +M+K+G+ P+      L++     G ++ AF + +
Sbjct: 859  KNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKE 918

Query: 329  EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            E     I    ++ S+++ A +      +A  L   M  +KL PT+++   L+   C   
Sbjct: 919  EMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNG 978

Query: 389  QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
             + + +E+   M + GL  + ++Y++L+     K D+ +   L  + K DG + N+  +K
Sbjct: 979  NVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYK 1038

Query: 449  CIIG 452
             ++G
Sbjct: 1039 ALVG 1042



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 168/403 (41%), Gaps = 40/403 (9%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T++ L++        + A +++  +   GL  +  +Y+TLI  C + G +     
Sbjct: 435 DPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIR 494

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++  M+  G  P+  T+  L+    KAG+VA+A      M S  + P+ V F+ LI   G
Sbjct: 495 IYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYG 554

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            SG   +AF V  EM    H   P   T G+L+K     G +  A +  K +        
Sbjct: 555 SSGEGLKAFSVFDEMTKVGH--HPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVD 612

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD------------------------- 303
             +    I    ++G+ + A S++ +M ++ ++PD                         
Sbjct: 613 TVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAK 672

Query: 304 -----------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
                      +V  +  +D    AG+ +A F   Q+    G++  +++ ++++   S  
Sbjct: 673 EAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRM 732

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT- 411
              +K  +L   M +    P ++T N L+        +  +  +   M   G+ P+ +T 
Sbjct: 733 GKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTC 792

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           YSI+L  CE  + +E+GL +L      GV  +   F  +I  C
Sbjct: 793 YSIILGICE-SNMLEIGLKILKAFICRGVEVDRHTFNMLISKC 834



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/486 (20%), Positives = 196/486 (40%), Gaps = 55/486 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L + G+++E  + +  M   G+L     +         S + +K AF  F    K+  +P
Sbjct: 518 LCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLK-AFSVFDEMTKVGHHP 576

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T  T+  L+           A + L+ +Q      D  +  TLIT   KSG +D    +F
Sbjct: 577 TFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLF 636

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            EMV   I P+  TY +LI G  + G+  +A  F      R  N+ P++V++   +    
Sbjct: 637 GEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARG-NLVPNKVMYTCFVDGMF 695

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G     F    +M+     +  D +T  A++   +  G++++  ++   +   N    
Sbjct: 696 KAGQWKAGFYFRQQMDKL--GLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPN 753

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I ++  S+      +  +Y  M   G++PD++   ++I     +  +E   +IL+
Sbjct: 754 LTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIGLKILK 813

Query: 329 EAKNQGISVGIISYSSLMG-ACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
               +G+ V   +++ L+   C+N + NW  A ++   M S+ +    +T +A+++ L  
Sbjct: 814 AFICRGVEVDRHTFNMLISKCCANGEINW--AFDMVNVMTSLGISLDKNTCDAIVSVLNR 871

Query: 387 GDQLPKTMEVLSDMKSLGL-----------------------------------CPNTIT 411
             +  ++  VL +M   G+                                   CP  + 
Sbjct: 872 NHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVA 931

Query: 412 YSIL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
            S +   L  C + D  E  L+L S  K   ++P +  F  ++ +  +       L   V
Sbjct: 932 ESAMVRALAKCGKAD--EASLLLRSMLKMK-LVPTIASFTTLMHLFCKNGNVTEALELRV 988

Query: 469 LSFNSG 474
           +  N G
Sbjct: 989 VMSNCG 994



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 116/271 (42%), Gaps = 18/271 (6%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           ++R++   P R +   L    G+S  V         + A     + +      L++    
Sbjct: 82  LVRARMYDPARHILKELSLMSGKSSFV------FGALMATYRLCNSNPSVFDILIRVYLR 135

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTI------AINCCSQTGDWEFACSVYDDMTKKGV 300
            G +  + E+++++  Y     P VYT        +  C     W F      +M K+ +
Sbjct: 136 EGMIQDSLEIFRLMGLYGF--NPSVYTCNAILGSIVKSCEDVSVWSF----LKEMLKRKI 189

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            PD    + LI+     G  + +  ++Q+ +  G +  I++Y++++        ++ A+E
Sbjct: 190 CPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIE 249

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           L +HM    +   V T N LI  LC  ++  K   +L DM+   + PN +TY+ LL    
Sbjct: 250 LLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFS 309

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +  V +   LL++    G+ PN V F  +I
Sbjct: 310 NEGKVLIARQLLNEMLTFGLSPNHVTFNALI 340



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 42/87 (48%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            PT+++F  LM +   + +   A ++  ++   GLK D   Y  LIT     G +   FE+
Sbjct: 962  PTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFEL 1021

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAG 176
            F EM   G   NV TY AL+ G    G
Sbjct: 1022 FEEMKRDGFLANVTTYKALVGGILSQG 1048



 Score = 46.6 bits (109), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 7/191 (3%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQKAIKEAFRFFKLVPN 89
            L R  R  E   +L +M ++G+    + Y      +C     K+   +KE     K+ P 
Sbjct: 869  LNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICP- 927

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P ++   M+ ++    K  E +  +LR + +  L      +TTL+    K+G V    E+
Sbjct: 928  PNVAESAMVRALAKCGKADEASL-LLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALEL 986

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
               M N G++ ++ +Y  LI G    G +A AF  +  M+      +   + AL+     
Sbjct: 987  RVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGILS 1046

Query: 210  SGAVDRAFDVL 220
             G      D++
Sbjct: 1047 QGTEFSGTDII 1057



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 8/149 (5%)

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGA----CSNAKNWQKALELYEHMKSIKLKPT 373
           G ++ + EI +     G +  + + ++++G+    C +   W    E+ +     K+ P 
Sbjct: 137 GMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKEMLKR----KICPD 192

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           V+T N LI  LC      K+  ++  M+  G  P  +TY+ +L    +K   +  + LL 
Sbjct: 193 VATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252

Query: 434 QAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
                GV  ++  +  +I    R    A+
Sbjct: 253 HMNLKGVNADVCTYNMLIHDLCRSNRSAK 281


>gi|356577604|ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 175/363 (48%), Gaps = 2/363 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ T+N L++ C   KD EG  ++L L++  G+ A    YT LI   A S ++    +V
Sbjct: 215 PTVFTYNTLLNACVVRKDREGVDEILGLMEREGVVASLVTYTILIEWYASSERIGEAEKV 274

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           + EM    +E +V+ Y ++I    +AG V +A   +  M  + + P+   F ALI+   +
Sbjct: 275 YEEMCERNVEMDVYVYTSMISWNCRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCK 334

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G ++ A  +L EM  +   VD + +    +M      G +D A  +  ++ +   +   
Sbjct: 335 AGQMEAAEILLEEMQCK--GVDLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADV 392

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I  +   +   +E A  V + M +KGV P+ V  +  I+     G +      L+ 
Sbjct: 393 FTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRN 452

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            + +G+   I++Y++L+ A S  +  ++A  L   M    L P V T  +LI   C  D+
Sbjct: 453 IEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVFTYTSLIHGECIVDK 512

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + + +++ ++M   G+  N  TY+ ++    ++   +  L L  +    G+IP+  +F+ 
Sbjct: 513 VDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLYDEMMRMGLIPDDRVFEA 572

Query: 450 IIG 452
           ++G
Sbjct: 573 LVG 575



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 177/373 (47%), Gaps = 14/373 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC--AKSGKVDA 145
           P+   +  +ML  VCA ++    A +V   V E GL  + +       +C   K  KV+ 
Sbjct: 112 PHFVETLCDMLFRVCADNRMFRDALKVFDYVMEKGLVVEGR-------SCFXKKCNKVEL 164

Query: 146 MFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               F  MV +G ++  V +   ++D   + G+V +A      M ++ V P    +N L+
Sbjct: 165 CVRFFRRMVESGRVDIGVQSLTIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLL 224

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            AC      +   ++L  M  E   V    +T   L++  A++ ++  A +VY+ + + N
Sbjct: 225 NACVVRKDREGVDEILGLMERE--GVVASLVTYTILIEWYASSERIGEAEKVYEEMCERN 282

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           ++    VYT  I+   + G+   A +++D+M  +G++P+     ALI     AG++EAA 
Sbjct: 283 VEMDVYVYTSMISWNCRAGNVRRASALFDEMICRGIVPNTXTFGALISGVCKAGQMEAAE 342

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +L+E + +G+ + ++ ++++M          +A  L + M+    +  V T N L + L
Sbjct: 343 ILLEEMQCKGVDLNVVIFNTMMDGYCKRGMMDEAFRLQDIMERKGFEADVFTYNILASGL 402

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPN 443
           C   +  +   VL+ M   G+ PN +T +  + + C+  +  E    L +  K  GV+PN
Sbjct: 403 CKLHRYEEAKRVLNVMVEKGVAPNVVTCATFIEIYCQEGNLAEPERFLRNIEKR-GVVPN 461

Query: 444 LVMFKCIIGMCSR 456
           +V +  +I   S+
Sbjct: 462 IVTYNTLIDAYSK 474



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 167/387 (43%), Gaps = 38/387 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R+G +    +L+ +M  +G++     Y+    N C  +K  +       L+       
Sbjct: 192 LCRRGEVGRAKELMNEMAARGVVPTVFTYNT-LLNACVVRKDREGVDEILGLMEREGVVA 250

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           +L T+ +L+   ASS+    A +V   + E  ++ D  +YT++I+   ++G V     +F
Sbjct: 251 SLVTYTILIEWYASSERIGEAEKVYEEMCERNVEMDVYVYTSMISWNCRAGNVRRASALF 310

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM+  GI PN  T+GALI G  KAGQ+  A      M+ K V  + V+FN ++    + 
Sbjct: 311 DEMICRGIVPNTXTFGALISGVCKAGQMEAAEILLEEMQCKGVDLNVVIFNTMMDGYCKR 370

Query: 211 GAVDRAF------------------DVLAEMNAEVHP---------------VDPDHITI 237
           G +D AF                  ++LA    ++H                V P+ +T 
Sbjct: 371 GMMDEAFRLQDIMERKGFEADVFTYNILASGLCKLHRYEEAKRVLNVMVEKGVAPNVVTC 430

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
              ++     G +       + I K  +      Y   I+  S+    + A  +  +M +
Sbjct: 431 ATFIEIYCQEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVE 490

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           KG++PD    ++LI       KV+ A ++  E   +GI   + +Y++++   S      +
Sbjct: 491 KGLLPDVFTYTSLIHGECIVDKVDEALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADE 550

Query: 358 ALELYEHMKSIKLKPTVSTMNALITAL 384
           AL+LY+ M  + L P      AL+ +L
Sbjct: 551 ALKLYDEMMRMGLIPDDRVFEALVGSL 577



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           ++G ++E    L ++E++G++     Y+       K++K  +      ++V     P + 
Sbjct: 439 QEGNLAEPERFLRNIEKRGVVPNIVTYNTLIDAYSKNEKVKQAHXLKAEMVEKGLLPDVF 498

Query: 94  TFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           T+  L+   C   K  E A ++   +   G++ + K YT +I+  +K G+ D   +++ E
Sbjct: 499 TYTSLIHGECIVDKVDE-ALKLFNEMLVKGIRGNVKTYTAIISGLSKEGRADEALKLYDE 557

Query: 153 MVNAGIEPNVHTYGALIDGCAK 174
           M+  G+ P+   + AL+    K
Sbjct: 558 MMRMGLIPDDRVFEALVGSLHK 579


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 177/365 (48%), Gaps = 2/365 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L++    + + + A +++ +++E G++     + T++    K+G+++   ++
Sbjct: 188 PNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKM 247

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   G+ P+  +Y  L+ G  KAG + +A   +  M  K V PD V F +LI A  +
Sbjct: 248 FDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCR 307

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G ++RA  ++ +M      +  +  T  AL+      G +D A    K + +  I+ + 
Sbjct: 308 AGNLERAVALVGQMRER--GLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSV 365

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y + IN   + G  + A  +  +M  KG+ PD V  S ++      G  ++AFE+ ++
Sbjct: 366 VCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRK 425

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G+    I+YSSL+      +    A EL+E M  + L+P   T   LI   C    
Sbjct: 426 MLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGN 485

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + K + +  +M   G+ P+ +TYS+L+    +    +    LL +   +  +P+ + ++ 
Sbjct: 486 VQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEA 545

Query: 450 IIGMC 454
           ++  C
Sbjct: 546 LMHCC 550



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 186/392 (47%), Gaps = 21/392 (5%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI-MRSKNVKPDRVVFNALITACGQSG 211
           M+  G+ PNV+TY  L+      GQ  +A G  G  MR     P+ V +N L+ A  ++G
Sbjct: 145 MLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAG 204

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            VD A  ++  M      V P  +T   ++     AG+++ AR+++  + +  +      
Sbjct: 205 EVDAAERLVGVMRE--GGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVS 262

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   ++   + G    A +V+ +M +KGV+PD V  ++LI     AG +E A  ++ + +
Sbjct: 263 YNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMR 322

Query: 332 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            +G+ +   ++++L+ G C N      AL   + M+  +++P+V   N LI   C   ++
Sbjct: 323 ERGLRMNEFTFTALIDGFCRNG-FLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRM 381

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            +  E++ +M++ G+ P+ +TYS +L    +  D +    L  +  + GV+P+ + +  +
Sbjct: 382 DEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSL 441

Query: 451 I-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVA 496
           I G+C  RR   A  L E +L    G    E  +T+L            AL ++ E I  
Sbjct: 442 IRGLCEERRLGDACELFEKMLQL--GLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKK 499

Query: 497 GTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
           G +P V   S ++  L         +RL+  L
Sbjct: 500 GVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL 531



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 187/408 (45%), Gaps = 18/408 (4%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLL-EDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           V+  +++YN L+R    +G+  E + ++ +DM   G       Y+      C++ + +  
Sbjct: 150 VAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGE-VDA 208

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A R   ++      P+L TFN +++    +   E A ++   +   GL  D   Y TL++
Sbjct: 209 AERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVS 268

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K+G +     VF EM   G+ P+V T+ +LI    +AG + +A    G MR + ++ 
Sbjct: 269 GYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRM 328

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           +   F ALI    ++G +D A   + EM      + P  +    L+      G++D ARE
Sbjct: 329 NEFTFTALIDGFCRNGFLDDALLAMKEMRE--CRIQPSVVCYNVLINGYCKLGRMDEARE 386

Query: 256 VYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
              +IH+   KG  P+V  Y+  ++   + GD + A  +   M KKGV+PD +  S+LI 
Sbjct: 387 ---LIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIR 443

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                 ++  A E+ ++    G+     +Y++L+       N QKAL L++ M    + P
Sbjct: 444 GLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLP 503

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
            V T + LI  L    +  +   +L  +      P+ I Y  L+  C 
Sbjct: 504 DVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCR 551



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 184/404 (45%), Gaps = 23/404 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + GR+ +   + ++M R+GL      Y+      CK+   + EA   F  +     
Sbjct: 233 NGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKA-GCLHEALAVFAEMAQKGV 291

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + TF  L+     + + E A  ++  ++E GL+ +   +T LI    ++G +D    
Sbjct: 292 VPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALL 351

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EM    I+P+V  Y  LI+G  K G++ +A      M +K +KPD V ++ +++   
Sbjct: 352 AMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYC 411

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G  D AF++  +M  +   V PD IT  +L++      ++  A E+++ + +  ++  
Sbjct: 412 KIGDTDSAFELNRKMLKK--GVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPD 469

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  I+   + G+ + A S++D+M KKGV+PD V  S LID    + + + A  +L 
Sbjct: 470 EFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLF 529

Query: 329 EAKNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPT 373
           +   +      I Y +LM  C  A+                  +A ++Y+ M     K  
Sbjct: 530 KLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLD 589

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
            S  + LI   C G  + K +     +   G  PN+ T +I LV
Sbjct: 590 GSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNS-TSTISLV 632



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 138/320 (43%), Gaps = 53/320 (16%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    + GR+ E  +L+ +ME KG+                               
Sbjct: 368 YNVLINGYCKLGRMDEARELIHEMEAKGM------------------------------- 396

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + T++ ++S      D++ AF++ R + + G+  D   Y++LI    +  ++    
Sbjct: 397 -KPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDAC 455

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E+F +M+  G++P+  TY  LIDG  K G V KA   +  M  K V PD V ++ LI   
Sbjct: 456 ELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGL 515

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---------------GQVDR 252
            +S     A  +L ++  E  PV PD+I   ALM  C  A               G +++
Sbjct: 516 SKSARTKEAQRLLFKLYYE-DPV-PDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQ 573

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A +VY+ +   + K    VY++ I+   + G+   A S +  + + G  P+     +L+ 
Sbjct: 574 ADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVR 633

Query: 313 FAGHAGKVEAAFEILQEAKN 332
                G    A  ++QE  N
Sbjct: 634 GLFEEGMTVEADNVIQELLN 653


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 191/427 (44%), Gaps = 44/427 (10%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +     +YN L+    R GR+ E   LL++M                     SQK + 
Sbjct: 79  HGLKPNAITYNVLLSGLCRAGRMGETSALLDEM--------------------ASQKMVP 118

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           + F            T+++L    + + DS+    +     + G+       + L+    
Sbjct: 119 DGF------------TYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLC 166

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K GKV    EV   +VNAG+ P    Y  LI+G  + G++  AF  +G M+S+++KPD +
Sbjct: 167 KDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHI 226

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +NALI    ++  +  A D+L EM  + + V+P   T   L+ A    GQ+++   V  
Sbjct: 227 TYNALINGLCKAERITNAQDLLMEM--QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLS 284

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + +  +K     Y   +N   + G    A ++ DDM  K V+P+    +A+ID     G
Sbjct: 285 EMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHG 344

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
             + AF ++++ K+ GIS  I++Y+ L+    N     +A E+   + + +L P   + N
Sbjct: 345 PNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 404

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQA 435
            LI+A C    + K +++   M   G+     TY  L   L    R +++E    L  + 
Sbjct: 405 TLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEY---LYQKM 461

Query: 436 KEDGVIP 442
            ++ V+P
Sbjct: 462 MQNNVVP 468



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 198/421 (47%), Gaps = 17/421 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF--- 83
           SYN +I    R GR  + +++ ++M  + +L     Y+       K    ++  FR    
Sbjct: 17  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGD-LEAGFRLRDQ 75

Query: 84  ---FKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                L PN    T+N+L+S +C + +  E +  +L  +    +  D   Y+ L    ++
Sbjct: 76  MVCHGLKPNAI--TYNVLLSGLCRAGRMGETS-ALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +G   AM  +F + +  G+    +T   L++G  K G+V+ A      + +  + P RV+
Sbjct: 133 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 192

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +N LI    Q+G ++ AF    +M +    + PDHIT  AL+     A ++  A+++   
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSR--HIKPDHITYNALINGLCKAERITNAQDLLME 250

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +    +  T E +   I+   +TG  E    V  +M + G+ P+ V   ++++     GK
Sbjct: 251 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 310

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +  A  IL +  ++ +      Y++++ A        +A  L E MKS  + P++ T N 
Sbjct: 311 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 370

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI  LC+  Q+ +  E+++ + +  L P+ ++Y+ L+ AC  + +++  L L  +  + G
Sbjct: 371 LIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 430

Query: 440 V 440
           +
Sbjct: 431 I 431



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 173/370 (46%), Gaps = 3/370 (0%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P   ++N++++    +     A +V   + E  +  +   Y T+I    K G ++A F
Sbjct: 11  PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 70

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +  +MV  G++PN  TY  L+ G  +AG++ +       M S+ + PD   ++ L    
Sbjct: 71  RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 130

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G       +  +     + V     T   L+      G+V  A EV + +    +  
Sbjct: 131 SRNGDSKAMLSLFGKYLK--NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 188

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T  +Y   IN   QTG+ E A S +  M  + + PD +  +ALI+    A ++  A ++L
Sbjct: 189 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 248

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E ++ G++  + ++++L+ A       +K   +   M+   LKP V +  +++ A C  
Sbjct: 249 MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 308

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++P+ + +L DM    + PN   Y+ ++ A       +   +L+ + K +G+ P++V +
Sbjct: 309 GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTY 368

Query: 448 KCII-GMCSR 456
             +I G+C++
Sbjct: 369 NLLIKGLCNQ 378



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 139/313 (44%), Gaps = 13/313 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    + G +         M+ + +      Y+A    +CK+++         ++ 
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 88  PN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            N   PT+ TFN L+     +   E  F VL  +QE GLK +   Y +++    K+GK+ 
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 312

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  +M +  + PN   Y A+ID   + G   +AF     M+S  + P  V +N LI
Sbjct: 313 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 372

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                   +  A +++  ++   H + PD ++   L+ AC   G +D+A ++ + +HKY 
Sbjct: 373 KGLCNQSQISEAEEIINSLSN--HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 430

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAA 323
           IK T   Y   I+     G       +Y  M +  V+P     + +++ ++ +  +++A 
Sbjct: 431 IKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAE 490

Query: 324 ---FEILQEAKNQ 333
               E+LQ+  N 
Sbjct: 491 DLRKEMLQKRNNH 503


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 203/454 (44%), Gaps = 30/454 (6%)

Query: 21  YAHDVSEQLHSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           Y  DV   + + N     L+++GR      +  DM  +G    + V +    + C  Q  
Sbjct: 150 YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGA-SPNVVTYGTLIDGCCRQGD 208

Query: 77  IKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
             +AFR F      K+ P   + T  ++  +C  S+ SE A  + R ++ +G+  +   Y
Sbjct: 209 FLKAFRLFDEMIEKKIFPTVVIYTI-LIRGLCGESRISE-AESMFRTMRNSGMLPNLYTY 266

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            T++    K   V    E++ EM+  G+ PNV T+G LIDG  K  ++  A      M S
Sbjct: 267 NTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMAS 326

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
             V P+  V+N LI    ++G +  A  + +E+  E H + PD  T   L+K      ++
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEI--EKHEILPDVFTYSILIKGLCGVDRM 384

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           + A  + + + K         Y   I+   + G+ E A  V   MT+KG+ P+ +  S L
Sbjct: 385 EEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID    AGK+EAA  +  E   +G+   +++Y++L+       N ++A  L++ M+   L
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVL------------SDMKSLGLC-PNTITYSILLV 417
            P V T++ LI  LC   ++   +++             ++     LC PN + Y+ L+ 
Sbjct: 505 HPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQ 564

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                  +       S  +  G+ P++  F CI+
Sbjct: 565 GLCTDGRIFKASKFFSDMRCSGLRPDV--FTCIV 596



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 38/352 (10%)

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G+ D M++V+ +MV  G  PNV TYG LIDGC + G   KAF  +  M  K + P  V
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 199 VFNALITA-CGQS----------------------------------GAVDRAFDVLAEM 223
           ++  LI   CG+S                                    V +A ++  EM
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEM 289

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
             +   + P+ +T G L+       ++  AR+    +  + +     VY   I+   + G
Sbjct: 290 LGD--GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAG 347

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           +   A S++ ++ K  ++PD    S LI       ++E A  +LQE K +G     ++Y+
Sbjct: 348 NLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYN 407

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +L+       N +KA+E+   M    ++P + T + LI   C   ++   M + ++M   
Sbjct: 408 TLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIK 467

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           GL P+ + Y+ L+    +  + +    L  + +E G+ PN+    C+I G+C
Sbjct: 468 GLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLC 519



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 144/346 (41%), Gaps = 38/346 (10%)

Query: 134 ITTCAKSGKVDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           I TC  + +     E+FH +   A +  N   Y A+I     A   AKA           
Sbjct: 44  ILTCRTANQA---LELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKA----------- 89

Query: 193 VKPDRVVFNALITACGQSGAVDR----AFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               R +   LI  C Q     R     F+VL+ +  E     P+    G L+ A +  G
Sbjct: 90  ----RCLMRDLIQ-CLQKSRRSRICCSVFNVLSRL--ESSKFTPN--VFGVLIIAFSEMG 140

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            V+ A  VY   +K ++    +   + ++   + G ++    VY DM  +G  P+ V   
Sbjct: 141 LVEEALWVY---YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYG 197

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            LID     G    AF +  E   + I   ++ Y+ L+          +A  ++  M++ 
Sbjct: 198 TLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNS 257

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            + P + T N ++   C    + K +E+  +M   GL PN +T+ IL+    + D++   
Sbjct: 258 GMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSA 317

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 473
              L      GV+PN+ ++ C+I G C     KA  L+E  LS +S
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYC-----KAGNLSE-ALSLHS 357



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 97/477 (20%), Positives = 174/477 (36%), Gaps = 69/477 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           + G++   + L  +M  KGLL  D V +    +        KEAFR  K +     +P +
Sbjct: 450 KAGKMEAAMGLYTEMVIKGLLP-DVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNV 508

Query: 93  STFNMLM-SVCASSKDSEGA--FQVLRLVQEAGLKAD------CK----LYTTLITTCAK 139
            T + L+  +C   + S+    F         G K +      C     +YT LI     
Sbjct: 509 FTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCT 568

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G++    + F +M  +G+ P+V T   +I G  +A  +         +    + P+  V
Sbjct: 569 DGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSV 628

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDP------DHITIGALMKACANAGQVDRA 253
           +  L     +SG +  A     E    V P+D          TI +  + C     V   
Sbjct: 629 YRVLAKGYEESGYLKSALSFCGE---GVQPLDRVNSEPWGSYTIRSRFQLCV----VTEK 681

Query: 254 REVYKM------IHKY-------NIKGTPEVYTI--AINCCSQTGDWE--FACSVYDDMT 296
           +E +        IH +        I   P  + I   +    Q GD     A  ++  M 
Sbjct: 682 KECHSSYLTAFGIHSFVLLWYFHTILKPPSPHEILKKVPFIGQKGDQRPNKALQLFRQMQ 741

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
                PD V ++  +      G ++    I    +++G+   +   +SL+   S      
Sbjct: 742 MDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIG 801

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG------------ 404
            A  L++  +    K  V+T  ++I       Q  + +++ ++MK               
Sbjct: 802 TARRLFDGTQ----KKDVTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKRNGEX 857

Query: 405 ----LCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR 456
               + PN +T+  +L+AC     VE G       KED  + P +  F C++ +  R
Sbjct: 858 ESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCR 914



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 101/243 (41%), Gaps = 28/243 (11%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV-NAGIEPNVHTYGALI 169
           A Q+ R +Q    + D    T  ++ CA  G +D M E  H  + + G++ ++    +LI
Sbjct: 733 ALQLFRQMQMDDXQPDIVTVTVALSACADLGALD-MGEWIHAYIRHRGLDTDLCLNNSLI 791

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN----- 224
           +  +K G++  A   +   + K+V      + ++I      G  + A  +  EM      
Sbjct: 792 NMYSKCGEIGTARRLFDGTQKKDV----TTWTSMIVGHALHGQAEEALQLFTEMKETNKR 847

Query: 225 ---------AEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
                     E   V P+ +T   ++ AC++AG V+  ++ ++ M   Y+++     +  
Sbjct: 848 ARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGC 907

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI---DFAGHA-GKVEAAFEILQEA 330
            ++   + G        Y+ + K  V P+ V    L+      G + G   +  +I  EA
Sbjct: 908 MVDLLCRAG---LLTEAYEFILKMPVRPNAVVWRTLLGACSLQGDSNGNGNSNIKIXSEA 964

Query: 331 KNQ 333
           + Q
Sbjct: 965 RRQ 967


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 181/370 (48%), Gaps = 17/370 (4%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN  I    + GR+S+ +  L DM    LL     Y+   +  C+    +K AF
Sbjct: 336 SPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMK-AF 394

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F  + +    PT+ T+N L+       + E A Q+   +   G+  D   YT L+   
Sbjct: 395 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGS 454

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G +    E F EM++ G+E + + Y   I G  K G  ++AF     M +K   PD 
Sbjct: 455 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDL 514

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV- 256
           +++N ++    + G ++ A ++L +M ++   V PD++T  +++ A    G++ + RE+ 
Sbjct: 515 IIYNVVVDGLCKLGNLEEASELLQKMVSD--GVIPDYVTYTSIIHAHLENGRLRKGREIF 572

Query: 257 YKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           Y+M+ K     TP V  YT+ I+  +  G  E A   + +M +KG++P+ +  ++LI+  
Sbjct: 573 YEMLSK---GLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               +++ A+    E   +GI     SY+ L+    N  NWQ+AL LY+ M    ++P  
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDS 689

Query: 375 STMNALITAL 384
            T +AL+  L
Sbjct: 690 CTHSALLKQL 699



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 195/437 (44%), Gaps = 40/437 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    + G++ + +DLL +M+R+G               C               
Sbjct: 236 TYNTLLDSYCKGGKVQQGLDLLSEMQRRG---------------C--------------- 265

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            PN    T+N+L++  +   + E A  ++  + + GLK     Y  LI      G +   
Sbjct: 266 APNDV--TYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEA 323

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +  EMV  G  P V TY + I G  K G+++ A      M + N+ PD V +N LI  
Sbjct: 324 LSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYG 383

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G + +AF +  E+ +    + P  +T   L+      G+++ A+++   +    I 
Sbjct: 384 YCRLGNLMKAFLLFDELRSIY--LFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIA 441

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                YTI +N   + G    A   +D+M  +G+  D    +  I      G    AF +
Sbjct: 442 PDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSL 501

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            +E   +G    +I Y+ ++       N ++A EL + M S  + P   T  ++I A  +
Sbjct: 502 QEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLE 561

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L K  E+  +M S GL P+ +TY++L+     K  +E   +  S+ +E G++PN++ 
Sbjct: 562 NGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVIT 621

Query: 447 FKCII-GMCS-RRYEKA 461
           +  +I G+C  RR ++A
Sbjct: 622 YNSLINGLCKVRRMDQA 638



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/371 (20%), Positives = 161/371 (43%), Gaps = 28/371 (7%)

Query: 90  PTLSTFNMLMSVCASSKDS-EGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P +   ++ + V +S + S   A ++ R  + + G +    ++  ++   A++  + + +
Sbjct: 76  PVIVDPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAY 135

Query: 148 EVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            V   ++NA    N+H     LI GC  +    K                  + + LI  
Sbjct: 136 WVMERVINA----NMHRIVDVLIGGCVSSEVSVK------------------ILDLLIWV 173

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   V++   V  +M      + PD      +++   +   + +A EVY+ + ++ IK
Sbjct: 174 YSKKSMVEQCLSVFDKMIKS--RLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIK 231

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            T   Y   ++   + G  +    +  +M ++G  P++V  + LI+     G+ E A  +
Sbjct: 232 PTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGL 291

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           + E    G+ V   +Y+ L+    N     +AL L E M      PTV+T N+ I  LC 
Sbjct: 292 IGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCK 351

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             ++   M+ LSDM +  L P+ ++Y+ L+    R  ++    +L  + +   + P +V 
Sbjct: 352 LGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVT 411

Query: 447 FKCII-GMCSR 456
           +  ++ G+C +
Sbjct: 412 YNTLLDGLCRQ 422



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 145/334 (43%), Gaps = 13/334 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN L+    RQG +     L  +M  +G+   D V +    N      ++  A  FF  
Sbjct: 411 TYNTLLDGLCRQGELEVAQQLKVEMINEGIAP-DIVTYTILVNGSCKMGSLSMAQEFFDE 469

Query: 86  -LVPNPTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            L     L ++     +    K  D+  AF +   +   G   D  +Y  ++    K G 
Sbjct: 470 MLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGN 529

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           ++   E+  +MV+ G+ P+  TY ++I    + G++ K    +  M SK + P  V +  
Sbjct: 530 LEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTV 589

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI      G ++RAF   +EM  +   + P+ IT  +L+       ++D+A   +  + +
Sbjct: 590 LIHGHAGKGRLERAFIYFSEMQEK--GILPNVITYNSLINGLCKVRRMDQAYNFFAEMVE 647

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I      YTI IN     G+W+ A S+Y  M  +GV PD    SAL+   G   K++A
Sbjct: 648 KGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQA 707

Query: 323 AF--EILQEAKNQGISVGIISYSSLMGACSNAKN 354
                 +  AK   +S  + + ++L    S A+N
Sbjct: 708 VHGTSTMPTAKVDLLSQTVGAATALTSVSSIAEN 741



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 130/326 (39%), Gaps = 37/326 (11%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++   ++L+ V +     E    V   + ++ L  D K    ++        +    EV+
Sbjct: 163 SVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVY 222

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M   GI+P + TY  L+D   K G+V +       M+ +   P+ V +N LI    + 
Sbjct: 223 RTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKK 282

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G  ++A  ++ EM                                      K  +K +  
Sbjct: 283 GEFEQAKGLIGEM-------------------------------------LKTGLKVSAY 305

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   I      G    A S+ ++M  KG  P     ++ I      G++  A + L + 
Sbjct: 306 TYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDM 365

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
               +   ++SY++L+       N  KA  L++ ++SI L PT+ T N L+  LC   +L
Sbjct: 366 LANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGEL 425

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILL 416
               ++  +M + G+ P+ +TY+IL+
Sbjct: 426 EVAQQLKVEMINEGIAPDIVTYTILV 451



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 20/232 (8%)

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           ++ L +++ M   +L P V   N ++  L D D + K +EV   M   G+ P  +TY+ L
Sbjct: 181 EQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTL 240

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVL---- 469
           L +  +   V+ GL LLS+ +  G  PN V +  +I   S++  +E+A+ L   +L    
Sbjct: 241 LDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGL 300

Query: 470 --SFNSGRPQIENKWT----SLALMVYREAIVAGTIPTVEVV-SKVLGCLQLPYNADIRE 522
             S  +  P I   +     + AL +  E ++ G  PTV    S + G  +L   +D  +
Sbjct: 301 KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQ 360

Query: 523 RLVENLG--VSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVPCV 570
           +L + L   +  D +  +   +LI G+       +AF L +E  S  + P +
Sbjct: 361 QLSDMLANNLLPDVVSYN---TLIYGYCRLGNLMKAFLLFDELRSIYLFPTI 409


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 180/393 (45%), Gaps = 11/393 (2%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           FFN     + I +A R   ++     P +  +N ++S    +   E A  VL  ++  G 
Sbjct: 20  FFN----SRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGF 75

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMV-NAGIEPNVHTYGALIDGCAKAGQVAKAF 182
             D   +  +I T    GK+D   +VF E++ +   +P + TY  LI+     G + +A 
Sbjct: 76  SPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEAL 135

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
                M S+ ++PD   +N +     + G VDRAF+ +  +N+      PD IT   L++
Sbjct: 136 KLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNS--RGCKPDVITYNILLR 193

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
           A  N G+ D   +    I     +     Y+I I+   + G  E + ++   M +KG+ P
Sbjct: 194 ALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTP 253

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D      LI      GK++ A E L      G    I++Y+++M A     N   A+E++
Sbjct: 254 DAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIF 313

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
             +  +   P VS+ N +++AL       + + ++S M S G+ P+ ITY+ L+    R 
Sbjct: 314 GKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRD 373

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMC 454
             V+  + LL+        PN+V +K + +G+C
Sbjct: 374 GMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLC 406



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 167/364 (45%), Gaps = 3/364 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +P + T N+++         + A +V   L+++   K     YT LI      G +D   
Sbjct: 76  SPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEAL 135

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++  EM++ G+EP+  TY  +  G  K G+V +AF     + S+  KPD + +N L+ A 
Sbjct: 136 KLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRAL 195

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
              G  D     ++E+ +     +P+ +T   L+ +    G+++ +  + K++ +  +  
Sbjct: 196 LNQGKWDEGEKWMSEIFS--RGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTP 253

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   I    + G  + A    D M   G +PD V  + ++      G  + A EI 
Sbjct: 254 DAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIF 313

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            +    G    + SY++++ A  ++ +  +AL +   M S  + P V T N+LI+ LC  
Sbjct: 314 GKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRD 373

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             + + + +L+DM S    PN ++Y  +L+   +   ++  + +L+   E+G  PN   +
Sbjct: 374 GMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTY 433

Query: 448 KCII 451
             +I
Sbjct: 434 TLLI 437



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 155/354 (43%), Gaps = 4/354 (1%)

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
           +S++ + A +V+ ++++ G K D   Y  +I+   K+ ++++   V   M   G  P+V 
Sbjct: 22  NSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVV 80

Query: 164 TYGALIDGCAKAGQVAKAFGAYG-IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
           T+  +I      G++  A   +  +++  N KP  + +  LI A    G +D A  +L E
Sbjct: 81  THNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDE 140

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M +    ++PD  T   + +     G+VDRA E  + ++    K     Y I +      
Sbjct: 141 MLS--RGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQ 198

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G W+       ++  +G  P+ V  S LI      GK+E +  +++  K +G++     Y
Sbjct: 199 GKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCY 258

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
             L+ A         A+E  + M      P +   N ++ ALC        +E+   +  
Sbjct: 259 DPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDE 318

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           +G  PN  +Y+ +L A     D    L ++SQ    G+ P+++ +  +I    R
Sbjct: 319 VGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCR 372



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 129/311 (41%), Gaps = 2/311 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+N++          + AF+ +R +   G K D   Y  L+      GK D   + 
Sbjct: 148 PDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKW 207

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             E+ + G EPNV TY  LI    + G++ ++     +M+ K + PD   ++ LI A  +
Sbjct: 208 MSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCR 267

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D A + L  M  +     PD +    +M A    G  D A E++  + +       
Sbjct: 268 EGKLDMAIEFLDCMICDGFL--PDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNV 325

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   ++    +GD   A  +   M  KG+ PD +  ++LI      G V+ A  +L +
Sbjct: 326 SSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLAD 385

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             +      I+SY +++     A     A+E+   M     +P  +T   LI  +     
Sbjct: 386 MLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGS 445

Query: 390 LPKTMEVLSDM 400
             + ME+ + +
Sbjct: 446 RTQAMELANSL 456



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 6/237 (2%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFAC 289
           PD I    L+K   N+  +D+A  V  ++ K+   G P+V  Y   I+   +    E A 
Sbjct: 8   PDVILCTKLIKGFFNSRNIDKATRVMGILEKH---GKPDVFAYNAVISGFCKANRIESAK 64

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGA 348
           +V D M +KG  PD V  + +I      GK++ A ++ +E  K+      +I+Y+ L+ A
Sbjct: 65  TVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEA 124

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
                   +AL+L + M S  L+P   T N +   LC   ++ +  E +  + S G  P+
Sbjct: 125 YILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPD 184

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
            ITY+ILL A   +   + G   +S+    G  PN+V +  +I    R  +   ++N
Sbjct: 185 VITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVN 241



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 105/234 (44%), Gaps = 7/234 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R G+I E ++L++ M+ KGL      Y       C+  K +  A  F   +      P
Sbjct: 230 LCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGK-LDMAIEFLDCMICDGFLP 288

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            +  +N +M+    + + + A ++   + E G   +   Y T+++    SG       + 
Sbjct: 289 DIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMI 348

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M++ GI+P+V TY +LI    + G V +A G    M S   +P+ V +  ++    ++
Sbjct: 349 SQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKA 408

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
             +D A +VLA M    +   P+  T   L++    +G   +A E+   ++  N
Sbjct: 409 HRIDDAIEVLAAMIE--NGCQPNETTYTLLIEGIGFSGSRTQAMELANSLYIMN 460


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 195/423 (46%), Gaps = 10/423 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---- 84
           LH Y      G+ ++ I + + M R G+      Y+     +CK+ +++ EA + F    
Sbjct: 280 LHGY---CSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSM-EARKIFDSMV 335

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K    P  +T+  L+   A+         +L ++   G++ D  ++  LI T  K GKVD
Sbjct: 336 KRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVD 395

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +F +M   G+ P+  TYG ++D     G+V  A   +G + S+ + PD VVF  LI
Sbjct: 396 DAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLI 455

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                    D+A ++  EM      + P++I    L+      G V RA+ ++ ++ + +
Sbjct: 456 HGLCARDKWDKAEELAVEMIGR--GICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVD 513

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           ++     Y   I+     G  + A  + + M   GV P+EV  + +I+     G++E AF
Sbjct: 514 VQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAF 573

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            + ++  ++G++ GI++YS+++     A+    A ELY  M    +K  + T N ++  L
Sbjct: 574 SLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGL 633

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C  +     + +  ++  +       T++I++ A  +    +    L +     G++PN+
Sbjct: 634 CQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNV 693

Query: 445 VMF 447
           V +
Sbjct: 694 VTY 696



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 177/401 (44%), Gaps = 8/401 (1%)

Query: 21  YAHDVSEQLHSYNRLIRQGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           Y  DV       N L+R+GR +     L + M  +GL      Y++    + K++   K 
Sbjct: 198 YPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKA 257

Query: 80  AFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           A    ++V N   P   T N L+    SS     A  V + +   G++ D   Y TL+  
Sbjct: 258 AVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGY 317

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K+G+     ++F  MV  G +PN  TYG L+ G A  G + K      +M    ++PD
Sbjct: 318 LCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPD 377

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
             +FN LI    + G VD A  + ++M  +   ++PD +T G +M A    G+VD A   
Sbjct: 378 HYIFNILIGTYTKHGKVDDAMLLFSKMRRQ--GLNPDTVTYGIVMDALCMVGKVDDAMAQ 435

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  +    +     V+   I+       W+ A  +  +M  +G+ P+ +F + L++    
Sbjct: 436 FGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCK 495

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVS 375
            G V  A  I        +   +I+Y++L+ G C + K   +A +L E M    +KP   
Sbjct: 496 EGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGK-VDEAAKLLEGMVLDGVKPNEV 554

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           T N +I   C   ++     +   M S G+ P  +TYS +L
Sbjct: 555 TYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTIL 595



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 152/367 (41%), Gaps = 48/367 (13%)

Query: 94  TFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           TF+ +L ++C   + SE     LR +   G   +   YT L+       +      + H 
Sbjct: 128 TFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHT 187

Query: 153 MVNA-----GIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           M+ A     G  P+V +Y  +I+G  + G Q+  A+  +  M  + + PD V +N++I+A
Sbjct: 188 MMVADDTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISA 247

Query: 207 CGQSGAVDRAFDVLAEM--NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
             ++ A+D+A  VL  M  N  +    P+ IT  +L+    ++G+ + A  V+K + +  
Sbjct: 248 LSKARAMDKAAVVLVRMVKNGAM----PNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDG 303

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-------------------------- 298
           ++     Y   +    + G    A  ++D M K+                          
Sbjct: 304 VEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMH 363

Query: 299 ---------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
                    G+ PD    + LI      GKV+ A  +  + + QG++   ++Y  +M A 
Sbjct: 364 HLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDAL 423

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
                   A+  +  + S  L P       LI  LC  D+  K  E+  +M   G+CPN 
Sbjct: 424 CMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNN 483

Query: 410 ITYSILL 416
           I ++ LL
Sbjct: 484 IFFNTLL 490



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 90/444 (20%), Positives = 183/444 (41%), Gaps = 63/444 (14%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           G  +++AH      H+++ L+ +   S  +DL   +        D   H+    +   ++
Sbjct: 32  GTDSHHAH------HAFDELLHRPTTSSIVDLNRALS-------DAARHSPAVAISLFRR 78

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            +  A      VP P L T+++++  C+     + AF  L  V  +G  A+   ++ L+ 
Sbjct: 79  MVMVAR---PKVP-PNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLK 134

Query: 136 T-CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNV 193
             C K    +AM      M   G  PNV +Y  L+ G     +  +A    + +M + + 
Sbjct: 135 ALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDT 194

Query: 194 K----PDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           +    PD V +N +I    + G  +D A+ +  +M  +   + PD +T  +++ A + A 
Sbjct: 195 RGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQ--GLSPDVVTYNSIISALSKAR 252

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            +D+A                                     V   M K G +P+ +  +
Sbjct: 253 AMDKA-----------------------------------AVVLVRMVKNGAMPNRITHN 277

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG-ACSNAKNWQKALELYEHMKS 367
           +L+     +GK   A  + +     G+   + +Y++LMG  C N ++ + A ++++ M  
Sbjct: 278 SLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSME-ARKIFDSMVK 336

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
              KP  +T   L+        L K   +L  M   G+ P+   ++IL+    +   V+ 
Sbjct: 337 RGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDD 396

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII 451
            ++L S+ +  G+ P+ V +  ++
Sbjct: 397 AMLLFSKMRRQGLNPDTVTYGIVM 420



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 121/286 (42%), Gaps = 13/286 (4%)

Query: 94  TFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           T+N L+   C   K  E A ++L  +   G+K +   Y T+I    K+G+++  F +F +
Sbjct: 520 TYNTLIDGYCLHGKVDEAA-KLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQ 578

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M + G+ P + TY  ++ G  +A + A A   Y  M    +K D   +N ++    Q+  
Sbjct: 579 MASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNC 638

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
            D A  +    N  +     ++ T   ++ A    G+ D A++++  +    +      Y
Sbjct: 639 TDDALRIF--QNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTY 696

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
            + +    + G  E    ++  + K G   +   L+AL+      G+V  A   L +   
Sbjct: 697 WLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDE 756

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI--KLKPTVST 376
              S+   +  SL+   S+ K  Q       H+ +I  K +P V T
Sbjct: 757 NNFSLEASTAESLVLLVSSGKYDQ-------HINAIPEKYRPVVKT 795



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 47/244 (19%), Positives = 98/244 (40%), Gaps = 44/244 (18%)

Query: 24  DVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           DV   + +YN LI      G++ E   LLE M   G+   +  Y+      CK+ + I++
Sbjct: 513 DVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGR-IED 571

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-------- 127
           AF  F+ +     NP + T++ ++     ++ +  A ++   + ++G+K D         
Sbjct: 572 AFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILL 631

Query: 128 ---------------------------KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
                                      + +  +I    K G+ D   ++F  ++  G+ P
Sbjct: 632 GLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVP 691

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           NV TY  ++    + G + +    +  +       +  + NAL+    Q G V +A   L
Sbjct: 692 NVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEVRKAGVYL 751

Query: 221 AEMN 224
           ++++
Sbjct: 752 SKID 755


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 194/423 (45%), Gaps = 7/423 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L  +GR+SE ++L++ M   G        +A    +C + K         ++V     
Sbjct: 150 NGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQ 209

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+  ++ V   S  +  A ++LR ++E  +K D   Y+ +I    K G +D  F +
Sbjct: 210 PNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNL 269

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+EM   G + ++  Y  LI G   AG+          M  + + PD V F+ALI    +
Sbjct: 270 FNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK 329

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +  A ++  EM      + PD +T  +L+       Q+D+A  +  ++         
Sbjct: 330 EGKLREAEELHKEMIQ--RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNI 387

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             + I IN   +    +    ++  M+ +GV+ D V  + LI      GK+E A E+ QE
Sbjct: 388 RTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQE 447

Query: 330 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             ++ +   I+SY  L+ G C N +  +KALE++E ++  K++  +   N +I  +C+  
Sbjct: 448 MVSRRVRPDIVSYKILLDGLCDNGEP-EKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++    ++   +   G+ P+  TY+I++    +K  +    +L  + +EDG  PN   + 
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYN 566

Query: 449 CII 451
            +I
Sbjct: 567 ILI 569



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 192/452 (42%), Gaps = 21/452 (4%)

Query: 31  SYNRLIRQGRIS----ECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFR 82
           SY   +R G +     + +DL ++M R      L+D      +R F+V    K       
Sbjct: 39  SYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDF-----SRLFSVVARTKQYDLVLD 93

Query: 83  FFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             K +        L T +++++ C   +    AF  +  + + G + D   ++TLI    
Sbjct: 94  LCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLC 153

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
             G+V    E+   MV  G +P + T  AL++G    G+V+ A      M     +P+ V
Sbjct: 154 LEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEV 213

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +  ++    +SG    A ++L +M  E   +  D +    ++      G +D A  ++ 
Sbjct: 214 TYGPVLKVMCKSGQTALAMELLRKM--EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 271

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +     K    +YT  I      G W+    +  DM K+ + PD V  SALID     G
Sbjct: 272 EMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEG 331

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           K+  A E+ +E   +GIS   ++Y+SL+          KA  + + M S    P + T N
Sbjct: 332 KLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFN 391

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI   C  + +   +E+   M   G+  +T+TY+ L+        +EV   L  +    
Sbjct: 392 ILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR 451

Query: 439 GVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
            V P++V +K ++ G+C     EKA  + E +
Sbjct: 452 RVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 205/477 (42%), Gaps = 55/477 (11%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH-ARFFNVCKSQKAIKEAF- 81
           +L  ++RL     R  +    +DL + ME KG+     +Y  +   N C   + +  AF 
Sbjct: 71  RLIDFSRLFSVVARTKQYDLVLDLCKQMELKGI--AHNLYTLSIMINCCCRCRKLSLAFS 128

Query: 82  ---RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              +  KL   P   TF+ L++ +C   + SE    V R+V E G K        L+   
Sbjct: 129 AMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV-EMGHKPTLITLNALVNGL 187

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
             +GKV     +   MV  G +PN  TYG ++    K+GQ A A      M  + +K D 
Sbjct: 188 CLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDA 247

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V ++ +I    + G++D AF++  EM  E+     D I    L++    AG+ D   ++ 
Sbjct: 248 VKYSIIIDGLCKDGSLDNAFNLFNEM--EIKGFKADIIIYTTLIRGFCYAGRWDDGAKLL 305

Query: 258 KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-- 313
           + + K  I  TP+V  ++  I+C  + G    A  ++ +M ++G+ PD V  ++LID   
Sbjct: 306 RDMIKRKI--TPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363

Query: 314 -------AGH--------------------------AGKVEAAFEILQEAKNQGISVGII 340
                  A H                          A  ++   E+ ++   +G+    +
Sbjct: 364 KENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTV 423

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +Y++L+         + A EL++ M S +++P + +   L+  LCD  +  K +E+   +
Sbjct: 424 TYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
           +   +  +   Y+I++        V+    L       GV P++  +  +I G+C +
Sbjct: 484 EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKK 540



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/409 (21%), Positives = 176/409 (43%), Gaps = 20/409 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
            +++G++ E  +L ++M ++G+      Y +     CK  +  K       +V     P 
Sbjct: 327 FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + TFN+L++    +   +   ++ R +   G+ AD   Y TLI    + GK++   E+F 
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EMV+  + P++ +Y  L+DG    G+  KA   +  +    ++ D  ++N +I     + 
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            VD A+D+   +   +  V PD  T   ++      G +  A  +++ + +         
Sbjct: 507 KVDDAWDLFCSL--PLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCT 564

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y I I      GD   +  + +++ + G             F+  A  +  A   L    
Sbjct: 565 YNILIRAHLGEGDATKSAKLIEEIKRCG-------------FSVDASTLRFALSTLARML 611

Query: 332 NQGISVGIISYSSLMGACSNAKNWQ--KALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             G    + ++++L+      +N     A  L+++MK++  KP V T N +I  L +G+ 
Sbjct: 612 KAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNM 671

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           + +   VL  M   G  PN +T S  +    ++D     ++LL + + D
Sbjct: 672 ISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMEND 720


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 175/380 (46%), Gaps = 9/380 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L+S        + A Q+L  ++E G++   K+YT LI    K         +
Sbjct: 195 PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSL 254

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM +    P+V TY  LI G  KAG++ +A+  +  M+ +  +PD V  N +I   G+
Sbjct: 255 FEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGK 314

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV---YKMIHKYNIK 266
           +G +D A  +  EM  E     P  +T   ++KA   +    RA EV   ++ + +  I 
Sbjct: 315 AGRLDDAMKLFQEM--ETLRCIPSVVTYNTIIKALFESK--SRASEVPSWFERMKESGIS 370

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            +   Y+I I+   +T   E A  + ++M +KG  P      +LID  G A + + A E+
Sbjct: 371 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 430

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            QE K    S     Y+ ++     A     A+ +++ M  +   P V   NAL++ L  
Sbjct: 431 FQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 490

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L + +  +  M+  G  P+  +Y+I+L    +       + +LS  K+  V P++V 
Sbjct: 491 TGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVS 550

Query: 447 FKCIIGMCSR--RYEKARTL 464
           +  ++G  S    +E+A  L
Sbjct: 551 YNTVLGALSHAGMFEEASKL 570



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 178/404 (44%), Gaps = 16/404 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
           +Y+ LI    + GR    I LL +M+  G+    K+Y    A FF    +  A+      
Sbjct: 199 TYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 258

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P + T+  L+     +   + A+     +Q  G + D      +I    K+G++
Sbjct: 259 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRL 318

Query: 144 DAMFEVFHEMVNAGIEPNVHTYG----ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           D   ++F EM      P+V TY     AL +  ++A +V   F     M+   + P    
Sbjct: 319 DDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFER---MKESGISPSSFT 375

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           ++ LI    ++  +++A  +L EM+ +  P  P      +L+ A   A + D A E+++ 
Sbjct: 376 YSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCP--AAYCSLIDALGKAKRYDLACELFQE 433

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +     +  VY + I    + G  + A +++D+M K G  PD    +AL+      G 
Sbjct: 434 LKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGM 493

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A   ++  +  G    I SY+ ++   +      +A+E+  +MK   ++P V + N 
Sbjct: 494 LDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNT 553

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
           ++ AL       +  +++ +M +LG   + ITYS +L A  + D
Sbjct: 554 VLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVD 597



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 154/379 (40%), Gaps = 45/379 (11%)

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
           AE   EV  +  DH  +  +MK   + G   + +       + N +     Y   I+C  
Sbjct: 44  AEKALEVLMLRVDHWLVREVMKT--DVGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLE 101

Query: 281 QTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
               +     +  +M +     V P E  LS ++   G+A  V  A  I  + K +    
Sbjct: 102 VVEQYGEMWKMIQEMVRNPICVVTPTE--LSDVVRMLGNAKMVRQAITIFYQIKTRKCQP 159

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEV 396
              +Y+S++    +   ++K  +LY  M +     P   T +ALI+A C   +    +++
Sbjct: 160 IAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQL 219

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L++MK +G+ P T  Y++L+    + +D    L L  + +     P++  +  +I    R
Sbjct: 220 LNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELI----R 275

Query: 457 RYEKARTLNEHVLSF-----NSGRPQ---IENKWTSL--------ALMVYREAIVAGTIP 500
              KA  ++E    F        RP    + N    L        A+ +++E      IP
Sbjct: 276 GLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIP 335

Query: 501 TVEVVSKVLGCLQLPYNADIR--------ERLVENLGVSADALKRSNLCSLIDGFGEYD- 551
           +V   + ++  L   + +  R        ER+ E+ G+S  +   S    LIDGF + + 
Sbjct: 336 SVVTYNTIIKAL---FESKSRASEVPSWFERMKES-GISPSSFTYS---ILIDGFCKTNR 388

Query: 552 -PRAFSLLEEAASFGIVPC 569
             +A  LLEE    G  PC
Sbjct: 389 MEKAMMLLEEMDEKGFPPC 407


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 194/424 (45%), Gaps = 9/424 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK--EAFRFFKLVPNP 90
            +L R+ + SE + L   +  +G++  +  Y      +C +  A +  E  R    V  P
Sbjct: 27  TKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGVYTP 86

Query: 91  TLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           TL  +N ++  +C +S+  + A++VL  + E  +  +   YT L+    +S K     EV
Sbjct: 87  TLFIYNGIITGLCRASRVMD-AYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREV 145

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   G +PN  TYG LI   ++AG++ +A       RS  +  D +    ++    +
Sbjct: 146 FQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCK 205

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +D A   + EM      V P+ +T   L+      G++DR    ++   K    G+ 
Sbjct: 206 ASRLDDALKFMEEMRQ--MGVRPNEVTYSNLVHGFRQHGELDRVIRFFEE-EKARKGGSL 262

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           E   Y   ++   + G  + A    +++ + GV+PD V  S LI+    AG+ +A+ E+L
Sbjct: 263 EAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELL 322

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++ +  G+   +++YS+L+      + +Q A  L E M++    P V T N+++  LC  
Sbjct: 323 EDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKS 382

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++ +   V   M      P+ +TYSI++    +   ++  + L    K     P+   +
Sbjct: 383 GKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAY 442

Query: 448 KCII 451
             +I
Sbjct: 443 SMVI 446



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 166/370 (44%), Gaps = 15/370 (4%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           R V EAG+K D + +T L T   +  K   +  +F  + + G+     TY  ++DG   A
Sbjct: 8   RSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGA 67

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G   +A      + S    P   ++N +IT   ++  V  A+ VL +M  E   + P+  
Sbjct: 68  GMANQALELVREL-SGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEE--SIVPNVF 124

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+     + +   AREV++ + +   K  P  Y   I   S+ G+ + A  V  + 
Sbjct: 125 TYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQ 184

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
               +  D +  + ++     A +++ A + ++E +  G+    ++YS+L+         
Sbjct: 185 RSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGEL 244

Query: 356 QKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            + +  +E  K+ K      +     + ALC    L +  + + +++  G+ P+ +TYS+
Sbjct: 245 DRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSM 304

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNE------ 466
           L+    R    +  L LL   + +GV P++V +  +I  +C  R+++ A  L E      
Sbjct: 305 LINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAG 364

Query: 467 ---HVLSFNS 473
              +V+++NS
Sbjct: 365 SPPNVVTYNS 374



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 37/226 (16%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N   R G+    ++LLEDM R G+                                 P +
Sbjct: 307 NTFARAGQFDASLELLEDMRRNGV--------------------------------KPDV 334

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T++ L++V    +  + AF++L L++ AG   +   Y +++    KSGK+D +  V+  
Sbjct: 335 VTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEM 394

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+ +   P+V TY  +++G +KAG +  A   + +++S    PD   ++ +IT+  ++G 
Sbjct: 395 MLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGK 454

Query: 213 VDRAFDVLAEMNAEVHPVDPDHI--TIGALMKACANAGQVDRAREV 256
           ++ A  +   M      V  D+I   +  L+ A  +A + D AR +
Sbjct: 455 LEEACGMYHGMEV---TVAGDNICRALAGLVAALCDAERTDSARRI 497



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 82/200 (41%), Gaps = 1/200 (0%)

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A+ + + + +  +K   + +T+      +   +     ++  +  +GV+  E     ++D
Sbjct: 3   AKLLERSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVD 62

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               AG    A E+++E          I    + G C  A     A ++ E M    + P
Sbjct: 63  GLCGAGMANQALELVRELSGVYTPTLFIYNGIITGLC-RASRVMDAYKVLEKMVEESIVP 121

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V T   L+  LC  ++     EV  +MK  G  PN ITY  L+    R  +++  L ++
Sbjct: 122 NVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVM 181

Query: 433 SQAKEDGVIPNLVMFKCIIG 452
            + +   +  +++    I+G
Sbjct: 182 IEQRSLELPTDVITCTTIVG 201


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 197/441 (44%), Gaps = 44/441 (9%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +     +YN L+    R GR+ E   LL++M                     SQK + 
Sbjct: 264 HGLKPNAITYNVLLSGLCRAGRMGETSALLDEM--------------------ASQKMVP 303

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           + F            T+++L    + + DS+    +     + G+       + L+    
Sbjct: 304 DGF------------TYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLC 351

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K GKV    EV   +VNAG+ P    Y  LI+G  + G++  AF  +G M+S+++KPD +
Sbjct: 352 KDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHI 411

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +NALI    ++  +  A D+L EM  + + V+P   T   L+ A    GQ+++   V  
Sbjct: 412 TYNALINGLCKAERITNAQDLLMEM--QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLS 469

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + +  +K     Y   +N   + G    A ++ DDM  K V+P+    +A+ID     G
Sbjct: 470 EMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHG 529

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
             + AF ++++ K+ GIS  I++Y+ L+    N     +A E+   + + +L P   + N
Sbjct: 530 PNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 589

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQA 435
            LI+A C    + K +++   M   G+     TY  L   L    R +++E    L  + 
Sbjct: 590 TLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEY---LYQKM 646

Query: 436 KEDGVIPNLVMFKCIIGMCSR 456
            ++ V+P+  +   ++   S+
Sbjct: 647 MQNNVVPSNAIHNIMVEAYSK 667



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 202/432 (46%), Gaps = 17/432 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF--- 83
           SYN +I    R GR  + +++ ++M  + +L     Y+       K    ++  FR    
Sbjct: 202 SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGD-LEAGFRLRDQ 260

Query: 84  ---FKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                L PN    T+N+L+S +C + +  E +  +L  +    +  D   Y+ L    ++
Sbjct: 261 MVCHGLKPNAI--TYNVLLSGLCRAGRMGETS-ALLDEMASQKMVPDGFTYSILFDGLSR 317

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +G   AM  +F + +  G+    +T   L++G  K G+V+ A      + +  + P RV+
Sbjct: 318 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 377

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +N LI    Q+G ++ AF    +M +    + PDHIT  AL+     A ++  A+++   
Sbjct: 378 YNTLINGYCQTGELEGAFSTFGQMKSR--HIKPDHITYNALINGLCKAERITNAQDLLME 435

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +    +  T E +   I+   +TG  E    V  +M + G+ P+ V   ++++     GK
Sbjct: 436 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 495

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +  A  IL +  ++ +      Y++++ A        +A  L E MKS  + P++ T N 
Sbjct: 496 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 555

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI  LC+  Q+ +  E+++ + +  L P+ ++Y+ L+ AC  + +++  L L  +  + G
Sbjct: 556 LIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 615

Query: 440 VIPNLVMFKCII 451
           +   +  +  +I
Sbjct: 616 IKSTVRTYHQLI 627



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 173/370 (46%), Gaps = 3/370 (0%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P   ++N++++    +     A +V   + E  +  +   Y T+I    K G ++A F
Sbjct: 196 PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 255

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +  +MV  G++PN  TY  L+ G  +AG++ +       M S+ + PD   ++ L    
Sbjct: 256 RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 315

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G       +  +     + V     T   L+      G+V  A EV + +    +  
Sbjct: 316 SRNGDSKAMLSLFGKYLK--NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 373

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T  +Y   IN   QTG+ E A S +  M  + + PD +  +ALI+    A ++  A ++L
Sbjct: 374 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 433

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E ++ G++  + ++++L+ A       +K   +   M+   LKP V +  +++ A C  
Sbjct: 434 MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 493

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++P+ + +L DM    + PN   Y+ ++ A       +   +L+ + K +G+ P++V +
Sbjct: 494 GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTY 553

Query: 448 KCII-GMCSR 456
             +I G+C++
Sbjct: 554 NLLIKGLCNQ 563



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 164/365 (44%), Gaps = 3/365 (0%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P+LS+ N+L+    S        +   ++  AG + D   +   +  C  +G +    
Sbjct: 125 PLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAV 184

Query: 148 EVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            +   M   G   PN  +Y  +I G  +AG+   A   +  M  + V P+ + +N +I  
Sbjct: 185 GMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDG 244

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G ++  F +  +M    H + P+ IT   L+     AG++     +   +    + 
Sbjct: 245 HIKGGDLEAGFRLRDQM--VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 302

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+I  +  S+ GD +   S++    K GV   +   S L++     GKV  A E+
Sbjct: 303 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 362

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           LQ   N G+    + Y++L+         + A   +  MKS  +KP   T NALI  LC 
Sbjct: 363 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 422

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
            +++    ++L +M+  G+ P   T++ L+ A  R   +E   ++LS+ +E+G+ PN+V 
Sbjct: 423 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 482

Query: 447 FKCII 451
           +  I+
Sbjct: 483 YGSIV 487



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 139/313 (44%), Gaps = 13/313 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    + G +         M+ + +      Y+A    +CK+++         ++ 
Sbjct: 378 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 437

Query: 88  PN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            N   PT+ TFN L+     +   E  F VL  +QE GLK +   Y +++    K+GK+ 
Sbjct: 438 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 497

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  +M +  + PN   Y A+ID   + G   +AF     M+S  + P  V +N LI
Sbjct: 498 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 557

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                   +  A +++  ++   H + PD ++   L+ AC   G +D+A ++ + +HKY 
Sbjct: 558 KGLCNQSQISEAEEIINSLSN--HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 615

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAA 323
           IK T   Y   I+     G       +Y  M +  V+P     + +++ ++ +  +++A 
Sbjct: 616 IKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAE 675

Query: 324 ---FEILQEAKNQ 333
               E+LQ+  N 
Sbjct: 676 DLRKEMLQKRNNH 688


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 175/365 (47%), Gaps = 11/365 (3%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P++ T+ +L+ +VC SS   E A  VL  ++  G   +   Y  +I    + G+VD   E
Sbjct: 185 PSVVTYTVLLEAVCKSSGFGE-AMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKE 243

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           + + + + G +P++ +Y  ++ G   A +       +  M  K   P+ V F+ L+    
Sbjct: 244 ILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFC 303

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V+RA  VL +M+   H   P+      ++ A    G+VD A +    +  Y     
Sbjct: 304 RGGMVERAIQVLQQMSQ--HGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPD 361

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  +    + G WE A  +  +M +K   P+EV  +  I      G +E A ++++
Sbjct: 362 TISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIE 421

Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                G SVGI++Y++L+ G C   +    ALEL+ ++     +P   T   L+T LC  
Sbjct: 422 LMPEYGCSVGIVTYNALVHGFCVQGR-VDSALELFNNLPC---EPNTITYTTLLTGLCHA 477

Query: 388 DQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
           ++L    E+L++M     CP N +T+++L+    +K  VE  + L++Q  E G  PNL+ 
Sbjct: 478 ERLDAAAELLAEMIQKD-CPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLIT 536

Query: 447 FKCII 451
           F  ++
Sbjct: 537 FNTLL 541



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/442 (22%), Positives = 189/442 (42%), Gaps = 33/442 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+GR+ +  ++L  +   G       Y      +C +++       F ++V     
Sbjct: 230 NGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV 289

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TF+ML+         E A QVL+ + + G   +  L   +I    K G+VD  ++ 
Sbjct: 290 PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF 349

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M   G  P+  +Y  ++ G  +AG+   A      M  KN  P+ V FN  I    Q
Sbjct: 350 LNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQ 409

Query: 210 SGAVDRAFDVLAEM------------NAEVH------------------PVDPDHITIGA 239
            G +++A  ++  M            NA VH                  P +P+ IT   
Sbjct: 410 KGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTT 469

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+    +A ++D A E+   + + +       + + ++   Q G  E A  + + M + G
Sbjct: 470 LLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG 529

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
             P+ +  + L+D        E A E+L    ++G+S+  I+YSS++   S     ++A+
Sbjct: 530 CTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAI 589

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           ++   ++ + ++P V   N ++ ALC   +  + ++  + M S G  PN  TY IL+   
Sbjct: 590 QMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGL 649

Query: 420 ERKDDVEVGLMLLSQAKEDGVI 441
             +  ++    +LS+    GV+
Sbjct: 650 AHEGLLKEARYVLSELYAKGVL 671



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 108/268 (40%), Gaps = 3/268 (1%)

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M  +  +P  V +  L+ A  +S     A +VL EM A+     P+ +T   ++      
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAK--GCTPNIVTYNVIINGMCRE 235

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G+VD A+E+   +  Y  +     YT  +        W+    ++ +M  K  +P+EV  
Sbjct: 236 GRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTF 295

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
             L+ F    G VE A ++LQ+    G +      + ++ A         A +   +M  
Sbjct: 296 DMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGM 355

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
               P   +   ++  LC   +     E+L +M      PN +T++  +    +K  +E 
Sbjct: 356 YGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQ 415

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            + L+    E G    +V +  ++ G C
Sbjct: 416 AIKLIELMPEYGCSVGIVTYNALVHGFC 443



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 114/243 (46%), Gaps = 5/243 (2%)

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            YT+ +    ++  +  A +V D+M  KG  P+ V  + +I+     G+V+ A EIL   
Sbjct: 189 TYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRL 248

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            + G    I+SY++++     A+ W     L+  M   K  P   T + L+   C G  +
Sbjct: 249 SSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMV 308

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            + ++VL  M   G  PNT   +I++ A  ++  V+     L+     G  P+ + +  +
Sbjct: 309 ERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTV 368

Query: 451 I-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 508
           + G+C + R+E A+ L   ++  N   P  E  + +   ++ ++ ++   I  +E++ + 
Sbjct: 369 LRGLCRAGRWEHAKELLPEMVRKNC--PPNEVTFNTFICILCQKGLIEQAIKLIELMPE- 425

Query: 509 LGC 511
            GC
Sbjct: 426 YGC 428


>gi|298708556|emb|CBJ30641.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 520

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 156/341 (45%), Gaps = 11/341 (3%)

Query: 133 LITTCAKSGKVDAMFEVFHEM----VNAGIEP---NVHTYGALIDGCAKAGQVAKAFGAY 185
           L  +CA+  +     ++  E+    V  G EP   +  ++ A I+   + G+  KA    
Sbjct: 8   LCQSCAEVAEWQTALDLLAELRAGQVTEGGEPLEADTVSFNATINALGRGGEWKKAVALL 67

Query: 186 GIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
             M      VKP+ + +N+ I ACG+ G  + A  +L EM     P  PD I+ GA+  A
Sbjct: 68  REMTRAGLGVKPNEISYNSAIHACGRGGQWELALSLLKEMRELGLP--PDRISFGAMANA 125

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
              AG+     E+ + +       T   +  A++CCS+ G+W  + ++   M   G  P 
Sbjct: 126 LGTAGKWPLLLELLEEMKADGNPPTDVAFKAAVDCCSKAGEWRHSVALIKAMRAAGYPPT 185

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            + LS++I   G  G+ E A  +L E +  G S     Y +   AC+ A  W++A  L E
Sbjct: 186 VLSLSSVISACGRGGRWEVALALLHETRKYGPSASASVYVATAQACARAGKWEEATNLME 245

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            MK   ++ T     AL+ A  +G +  KT++   +MK +GL P   +Y+  + AC +  
Sbjct: 246 MMKVDGVRATEKFYMALLRATGEGGRTDKTLDFFEEMKEIGLKPGVRSYNCAVGACGKAG 305

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
             E  + LL++  E+G+ P        I  CS   E  + L
Sbjct: 306 SWEGAMKLLTEMHEEGMRPAGFAVAATIRACSSAGEWRKGL 346



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 138/306 (45%), Gaps = 4/306 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +FN  ++      + + A  +LR +  AGL  K +   Y + I  C + G+ +    +  
Sbjct: 46  SFNATINALGRGGEWKKAVALLREMTRAGLGVKPNEISYNSAIHACGRGGQWELALSLLK 105

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   G+ P+  ++GA+ +    AG+          M++    P  V F A +  C ++G
Sbjct: 106 EMRELGLPPDRISFGAMANALGTAGKWPLLLELLEEMKADGNPPTDVAFKAAVDCCSKAG 165

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
               +  ++  M A  +P  P  +++ +++ AC   G+ + A  +     KY    +  V
Sbjct: 166 EWRHSVALIKAMRAAGYP--PTVLSLSSVISACGRGGRWEVALALLHETRKYGPSASASV 223

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y      C++ G WE A ++ + M   GV   E F  AL+   G  G+ +   +  +E K
Sbjct: 224 YVATAQACARAGKWEEATNLMEMMKVDGVRATEKFYMALLRATGEGGRTDKTLDFFEEMK 283

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+  G+ SY+  +GAC  A +W+ A++L   M    ++P    + A I A     +  
Sbjct: 284 EIGLKPGVRSYNCAVGACGKAGSWEGAMKLLTEMHEEGMRPAGFAVAATIRACSSAGEWR 343

Query: 392 KTMEVL 397
           K +EVL
Sbjct: 344 KGLEVL 349



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 33/374 (8%)

Query: 31  SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90
           + N L R G   + + LL +M R GL                    +K           P
Sbjct: 50  TINALGRGGEWKKAVALLREMTRAGL-------------------GVK-----------P 79

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              ++N  +  C      E A  +L+ ++E GL  D   +  +      +GK   + E+ 
Sbjct: 80  NEISYNSAIHACGRGGQWELALSLLKEMRELGLPPDRISFGAMANALGTAGKWPLLLELL 139

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM   G  P    + A +D C+KAG+   +      MR+    P  +  +++I+ACG+ 
Sbjct: 140 EEMKADGNPPTDVAFKAAVDCCSKAGEWRHSVALIKAMRAAGYPPTVLSLSSVISACGRG 199

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G  + A  +L E   +  P     + + A  +ACA AG+ + A  + +M+    ++ T +
Sbjct: 200 GRWEVALALLHETR-KYGPSASASVYV-ATAQACARAGKWEEATNLMEMMKVDGVRATEK 257

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   +    + G  +     +++M + G+ P     +  +   G AG  E A ++L E 
Sbjct: 258 FYMALLRATGEGGRTDKTLDFFEEMKEIGLKPGVRSYNCAVGACGKAGSWEGAMKLLTEM 317

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALCDGDQ 389
             +G+     + ++ + ACS+A  W+K LE+    + +K  KP   ++ A +   C   +
Sbjct: 318 HEEGMRPAGFAVAATIRACSSAGEWRKGLEVLRQSQQVKPSKPDPCSLGAAVEMCCRAGK 377

Query: 390 LPKTMEVLSDMKSL 403
           L     +L  + +L
Sbjct: 378 LDHARAILPHLTAL 391


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 181/417 (43%), Gaps = 42/417 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N+L+     +   + A ++   +   G   D   YTT++++  K+GK+D   E+
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236

Query: 150 FHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
                 AG  +P+V  Y ALIDG  K G++  A    G M    V P+ V ++ +I +  
Sbjct: 237 ------AGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLC 290

Query: 209 QSGAVDRAFDVLAEM-----NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
            SG V+ AF + A+M     +A +H   P       L+K C   G++  A +++K++ + 
Sbjct: 291 VSGNVELAFALFAQMFLRGCDANIHTFTP-------LIKGCFMRGKLYEALDLWKLMIQD 343

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             +     Y   I+     G  E A  V D M + G +P+    S LID    +G +  A
Sbjct: 344 GCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGA 403

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E      + G    +++Y+ ++        + +A  L E M      P   T N  I  
Sbjct: 404 SETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKG 463

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++   M++L  M+  G  PN  TY+ LL A  R +  E    L  + +   + PN
Sbjct: 464 LCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPN 523

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 500
           LV +  ++      + +A  + E                   AL ++ +A+V GT P
Sbjct: 524 LVTYNTVL----YGFSRAGMMGE-------------------ALQLFGKALVRGTAP 557



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/488 (21%), Positives = 205/488 (42%), Gaps = 55/488 (11%)

Query: 10  QFPYPNGKHANYAHD-VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYH 64
           +F   N  + N   D +   + +YN L++      R+     L  +M  KG       Y 
Sbjct: 159 KFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYT 218

Query: 65  ARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
               ++CK+ K   A + A RF      P++  +N L+         E A ++L  + + 
Sbjct: 219 TMVSSLCKAGKIDDARELAGRF-----KPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDN 273

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G+  +   Y+ +I +   SG V+  F +F +M   G + N+HT+  LI GC   G++ +A
Sbjct: 274 GVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEA 333

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              + +M     +P+ V +N LI     +G+++ A  V  +M  +     P+  T   L+
Sbjct: 334 LDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM--QRSGCLPNVTTYSILI 391

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
              A +G +  A E +  +  +  +     YT  ++   +   ++ A S+ + MT +G  
Sbjct: 392 DGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCT 451

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P+ +  +  I      G+VE A ++L+  +  G    I +Y+ L+ A      +++A  L
Sbjct: 452 PNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGL 511

Query: 362 YEHMKSIKLKPTVSTMNA-----------------------------------LITALCD 386
           ++ +++  L+P + T N                                    +I A C 
Sbjct: 512 FQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCK 571

Query: 387 GDQL---PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
             ++    + +E +S MK     P+ ITY+ L+       ++E  +  L +A   G+ PN
Sbjct: 572 QGKVKIAAQLVERVSSMKEWH--PDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPN 629

Query: 444 LVMFKCII 451
              +  ++
Sbjct: 630 FATWNALV 637



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 144/339 (42%), Gaps = 7/339 (2%)

Query: 71  CKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           C  +  + EA   +KL+      P +  +N L+    S+   E A QV   +Q +G   +
Sbjct: 324 CFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPN 383

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y+ LI   AKSG +    E ++ M++ G  PNV TY  ++D   K     +A     
Sbjct: 384 VTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVE 443

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M  +   P+ + FN  I     +G V+ A  +L  M    H   P+  T   L+ A   
Sbjct: 444 KMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQG--HGCLPNITTYNELLDALFR 501

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
             + + A  +++ I   N++     Y   +   S+ G    A  ++     +G  PD + 
Sbjct: 502 MNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSIT 561

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
            + +I      GKV+ A ++++   + +     II+Y+SL+    N  N ++A+   +  
Sbjct: 562 YNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKA 621

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
            +  + P  +T NAL+    D       + +L D+   G
Sbjct: 622 INQGICPNFATWNALVRCFFDSLGHMGPIHILDDILRKG 660



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 30/214 (14%)

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   Y + I    +  + +    +   M   G+   E     +I+     G  E A ++ 
Sbjct: 73  TASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMF 132

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                 G    +  Y+ L+ A  +   +Q    LY +MK   L P V T N L+ ALC  
Sbjct: 133 YRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKN 192

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDD-------------------- 424
           D++    ++  +M + G  P+ +TY+ +   L    + DD                    
Sbjct: 193 DRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALID 252

Query: 425 -------VEVGLMLLSQAKEDGVIPNLVMFKCII 451
                  +EV + LL +  ++GV PN+V + CII
Sbjct: 253 GMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCII 286


>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 559

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 175/377 (46%), Gaps = 14/377 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P L+ F++L+     + D +   QV R ++E G++     YT LI    K+G +  M+
Sbjct: 95  PVP-LAVFDVLLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMW 153

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALI 204
           + + +M   G+ PNV  Y ++I    K G VA   + F          V+P+R  +NA++
Sbjct: 154 QAWEDMREQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMV 213

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDP----DHITIGALMKACANAGQVDRAREVYKMI 260
            + GQ   +D+   ++  M A     DP    D+ T  A++ A + AG+VD+A E +  I
Sbjct: 214 HSYGQQQMMDKMEALVERMRA-----DPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSI 268

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                + +   +T  ++     G  +      D M + GV P     + +I+  G A  +
Sbjct: 269 AATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKARNI 328

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            +  +  +  +  G++  + +Y++L+   +      +A + Y  MK   L+PT+ T+ +L
Sbjct: 329 HSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREGLQPTMYTIASL 388

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA-KEDG 439
           + A    DQ  K + ++S MK  G  P+ + +++L+    R    E    +L  A KE G
Sbjct: 389 MDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGKPEEAEKVLCGAMKEYG 448

Query: 440 VIPNLVMFKCIIGMCSR 456
           +      F  +I   +R
Sbjct: 449 IALETNNFTSVIEAWAR 465



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 135/311 (43%), Gaps = 15/311 (4%)

Query: 37  RQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           R GR+ + ++  + +   G    L     + H       +S + ++   +  +L   P+ 
Sbjct: 254 RAGRVDKALEAFDSIAATGGQPSLHAWTAILHM-LGTAGRSDEMLRTLDKMKRLGVKPST 312

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           + +N +++    +++        + ++  G+ AD K Y TLI T AK+GK     + +  
Sbjct: 313 AVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVL 372

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G++P ++T  +L+D   +A Q  K       M+ +   PD VVFN LI   G+ G 
Sbjct: 373 MKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLIDTYGRMGK 432

Query: 213 VDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRARE-VYKMIHKYNIKGTPE 270
            + A  VL   M      ++ ++ T  ++++A A  G +D+A E +++M   Y  K   +
Sbjct: 433 PEEAEKVLCGAMKEYGIALETNNFT--SVIEAWARNGNLDKAEEWLHRMNTDYATKPDIK 490

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
             T  ++ C    D +    V   + +  +  D+     +  F  HA    A     QE 
Sbjct: 491 TLTTLLSFCIPAADVKRGRRVIHMIEQHKLQKDKQARETIRQF--HA----ATKRPDQEK 544

Query: 331 KNQGISVGIIS 341
           KNQ  S    S
Sbjct: 545 KNQPTSPSTTS 555



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/306 (20%), Positives = 128/306 (41%), Gaps = 11/306 (3%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +HSY +   Q  + +   L+E M     L +D   H+           + +A   F  + 
Sbjct: 213 VHSYGQ---QQMMDKMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIA 269

Query: 89  ----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P+L  +  ++ +  ++  S+   + L  ++  G+K    +Y T+I    K+  + 
Sbjct: 270 ATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKARNIH 329

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           +M + F  M   G+  +V TY  LID  AK G+  +A   Y +M+ + ++P      +L+
Sbjct: 330 SMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVLMKREGLQPTMYTIASLM 389

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKY 263
            A  ++   ++   +++ M  E     PD++    L+      G+ + A +V    + +Y
Sbjct: 390 DAYTRADQFEKVLRLISRMKKEGRA--PDNVVFNLLIDTYGRMGKPEEAEKVLCGAMKEY 447

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDM-TKKGVIPDEVFLSALIDFAGHAGKVEA 322
            I      +T  I   ++ G+ + A      M T     PD   L+ L+ F   A  V+ 
Sbjct: 448 GIALETNNFTSVIEAWARNGNLDKAEEWLHRMNTDYATKPDIKTLTTLLSFCIPAADVKR 507

Query: 323 AFEILQ 328
              ++ 
Sbjct: 508 GRRVIH 513


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/417 (26%), Positives = 175/417 (41%), Gaps = 46/417 (11%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + EA R       P   T   L+   ++S  +  A +VL     A    D   Y  ++  
Sbjct: 81  LDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVL-----AACGPDVMAYNAMVAG 135

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
              +G++DA   +  EM    +EP+ +TY  LI G    G+ A A      M  +   PD
Sbjct: 136 YCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPD 192

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +  L+ A  +     +A  +L EM  +     PD +T   ++      G+VD A E 
Sbjct: 193 VVTYTILLEATCKRSGYKQAMKLLDEMRDK--GCTPDIVTYNVVVNGICQEGRVDDAIEF 250

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            K +  Y  +     Y I +        WE A  +  +M +KG  P+ V  + LI F   
Sbjct: 251 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 310

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G VE A E+L++    G +   +SY+ L+ A    K   KA+   + M S    P + +
Sbjct: 311 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 370

Query: 377 MNALITALC-------------------------------DG----DQLPKTMEVLSDMK 401
            N L+TALC                               DG     +  + +E+L++M 
Sbjct: 371 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 430

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
           S GL P+ ITYS +     R+D +E  +    + ++ G+ PN V++  II G+C RR
Sbjct: 431 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRR 487



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 196/426 (46%), Gaps = 14/426 (3%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
           Y+A     C + + +  A R    +P  P   T+N L+        +  A  VL  +   
Sbjct: 129 YNAMVAGYCGAGQ-LDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRR 187

Query: 122 GLKADCKLYTTLI-TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
               D   YT L+  TC +SG   AM ++  EM + G  P++ TY  +++G  + G+V  
Sbjct: 188 RCVPDVVTYTILLEATCKRSGYKQAM-KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDD 246

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A      + S   +P+ V +N ++     +   + A +++ EM  +  P  P+ +T   L
Sbjct: 247 AIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP--PNVVTFNML 304

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           +      G V+ A EV + I KY        Y   ++   +    + A +  D M  +G 
Sbjct: 305 ISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGC 364

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            PD V  + L+     +G+V+ A E+L + K++G +  +ISY++++   + A   ++ALE
Sbjct: 365 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 424

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           L   M S  L+P + T + +   LC  D++   +     ++ +G+ PNT+ Y+ +++   
Sbjct: 425 LLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLC 484

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYE----KARTLNEHVLSFNSGR 475
           ++ +    + L +    +G +PN   +  +I G+    YE    +AR L + + S    R
Sbjct: 485 KRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLA---YEGLIKEARDLLDELCSRGVVR 541

Query: 476 PQIENK 481
             + NK
Sbjct: 542 KSLINK 547


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 174/367 (47%), Gaps = 5/367 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MFE 148
           T+  +N +M V A +       ++L L++E G   D   + TLI    KSG ++     +
Sbjct: 248 TVQVYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQ 307

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           + +E+  +GI P++ TY  LI  C++   + +A   +  M S   +PD   +NA+I+  G
Sbjct: 308 LLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYG 367

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +     +A ++  E+  E     PD +T  +L+ A +  G  ++ R++ + + K      
Sbjct: 368 RCARARKAEELFKEL--ESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQD 425

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I+   + G  + A  +Y DM   G  PD V  + LID  G A KVE A  ++ 
Sbjct: 426 EMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMS 485

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  + G+   + +YS+L+ A + A   ++A E +  M+   +KP     + ++      +
Sbjct: 486 EMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFN 545

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMF 447
           ++ K M +  +M   G  P+   Y +++ A  R++  +V   ++   +E  G+ P ++  
Sbjct: 546 EMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSGMNPQVISS 605

Query: 448 KCIIGMC 454
             + G C
Sbjct: 606 VLVKGGC 612



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 104/451 (23%), Positives = 198/451 (43%), Gaps = 46/451 (10%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS 100
           + LL ++ R G+   D + +    + C  +  ++EA   F  + +    P L T+N ++S
Sbjct: 306 LQLLNEVRRSGIRP-DIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMIS 364

Query: 101 V---CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           V   CA ++ +E  F+ L   +  G   D   Y +L+   ++ G  + + ++  EMV  G
Sbjct: 365 VYGRCARARKAEELFKEL---ESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRG 421

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
              +  TY  +I    K G+  +A   Y  M+S    PD V +  LI + G++  V+ A 
Sbjct: 422 FGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAA 481

Query: 218 DVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
           +V++EM +A V P      T  AL+ A A AG+ + A E +  + +  IK     Y++ +
Sbjct: 482 NVMSEMLDAGVKPT---LHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVML 538

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALI----------------DFAG- 315
           +   +  + + A  +Y +M ++G  PD    EV + AL+                + +G 
Sbjct: 539 DFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSGM 598

Query: 316 ----------HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
                       G  + A ++L+ A + G  +    + S+M + S++  + +A EL E  
Sbjct: 599 NPQVISSVLVKGGCYDHAAKMLKVAISNGYELDHEIFLSIMSSYSSSARYSEACELLEFS 658

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           +            ALI  LC   +L   +E       LG   +   Y  L+  C + +  
Sbjct: 659 REHAPNDIQMITEALIIILCKAKKLDAALEEYRSKGELGQFRSCTMYESLIQECIQNELF 718

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           +V   + S  + +GV  +  +++ ++ +  R
Sbjct: 719 DVASQIFSDMRFNGVESSECLYQGMVSVYCR 749



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 190/436 (43%), Gaps = 31/436 (7%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---- 73
           +H     L +YN +I    R  R  +  +L +++E KG       Y++  +   +     
Sbjct: 349 SHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTE 408

Query: 74  ------QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
                 ++ +K  F   ++       T+N ++ +       + A Q+ R ++ +G   D 
Sbjct: 409 KVRDICEEMVKRGFGQDEM-------TYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDA 461

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
             YT LI +  K+ KV+    V  EM++AG++P +HTY ALI   AKAG+  +A   +  
Sbjct: 462 VTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNC 521

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           MR   +KPDR+ ++ ++    +   + +A  +  EM  E     PD+     +M A    
Sbjct: 522 MRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIRE--GFTPDNGLYEVMMHALVRE 579

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVF 306
              D    + + + + +    P+V +   +   + G ++ A  +       G   D E+F
Sbjct: 580 NMWDVVDRIIRDMEELS-GMNPQVIS---SVLVKGGCYDHAAKMLKVAISNGYELDHEIF 635

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHM 365
           LS +  ++  A   EA  E+L+ ++    + + +I+ + ++  C  AK    ALE Y   
Sbjct: 636 LSIMSSYSSSARYSEAC-ELLEFSREHAPNDIQMITEALIIILC-KAKKLDAALEEYRSK 693

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
             +    + +   +LI      +      ++ SDM+  G+  +   Y  ++    R D  
Sbjct: 694 GELGQFRSCTMYESLIQECIQNELFDVASQIFSDMRFNGVESSECLYQGMVSVYCRMDLP 753

Query: 426 EVGLMLLSQAKEDGVI 441
           E    LL  A+++G+I
Sbjct: 754 ETAHHLLYHAEKNGII 769



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 151/364 (41%), Gaps = 37/364 (10%)

Query: 88   PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P+PT+ + N L+      +     + V++ +Q+ GLK         +   A++G +  + 
Sbjct: 840  PSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQ 899

Query: 148  EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            ++++ M  AG  P +H Y  ++    K  +V         M     +PD  + N+++   
Sbjct: 900  KIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSIL--- 956

Query: 208  GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
                              +++    D  ++G                 +Y+ I   ++K 
Sbjct: 957  ------------------KLYLGIEDFKSMGI----------------IYQKIQDASLKP 982

Query: 268  TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
              E Y   I    +    E   S+ + M   G+ P      +LI         E A E+ 
Sbjct: 983  DEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELF 1042

Query: 328  QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            +E ++ G  +    Y  +M     + + +KA  L   MK   ++PT+STM+ L+ +    
Sbjct: 1043 EELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKS 1102

Query: 388  DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             Q  +   VL ++++ G+  +T+ YS ++ A  +K D + G+  L++ KE G+ P+  ++
Sbjct: 1103 GQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIW 1162

Query: 448  KCII 451
             C I
Sbjct: 1163 TCFI 1166



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 2/251 (0%)

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             P L   N ++ +    +D +    + + +Q+A LK D + Y TLI    +  + +  F 
Sbjct: 946  QPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFS 1005

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            + ++M + G+EP + TY +LI    K     +A   +  +RS   K DR  ++ ++    
Sbjct: 1006 LMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYR 1065

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             SG   +A ++LA M      ++P   T+  LM +   +GQ + A  V K +    +   
Sbjct: 1066 TSGDHRKAENLLAIMKES--GIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLD 1123

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
               Y+  I+   + GD++       +M + G+ PD    +  I  A  +     A  +L 
Sbjct: 1124 TLPYSSVIDAYLKKGDFKAGIEKLTEMKEAGIEPDHRIWTCFIRAATLSEGTNEAIVLLN 1183

Query: 329  EAKNQGISVGI 339
              ++ G  + I
Sbjct: 1184 ALQDAGFDLPI 1194



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 97/516 (18%), Positives = 197/516 (38%), Gaps = 100/516 (19%)

Query: 88   PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            PN        L+ +   +K  + A +  R   E G    C +Y +LI  C ++   D   
Sbjct: 663  PNDIQMITEALIIILCKAKKLDAALEEYRSKGELGQFRSCTMYESLIQECIQNELFDVAS 722

Query: 148  EVFHEMVNAGIEPNVHTYGALI------DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            ++F +M   G+E +   Y  ++      D    A  +       GI+   ++     V+ 
Sbjct: 723  QIFSDMRFNGVESSECLYQGMVSVYCRMDLPETAHHLLYHAEKNGIILDNDIS----VYI 778

Query: 202  ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
             ++   G+     +A  +                 +G+L + C+   ++DR         
Sbjct: 779  DIVETYGKLKIWQKAESL-----------------VGSLRQRCS---KMDR--------- 809

Query: 262  KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                    +V+   I+  + +G +E A ++++ M + G  P    ++ L+       ++ 
Sbjct: 810  --------KVWNALIHAYAFSGCYERARAIFNTMMRDGPSPTVDSVNGLLQALIVDRRLN 861

Query: 322  AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
              + ++QE ++ G+ +   S    + A + A N  +  ++Y  MK+    PT+     ++
Sbjct: 862  ELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIML 921

Query: 382  TALC------DGDQLPKTMEV-------------------LSDMKSLG----------LC 406
              LC      D + +   ME                    + D KS+G          L 
Sbjct: 922  RLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLK 981

Query: 407  PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTL 464
            P+  TY+ L++   R    E G  L+++ +  G+ P L  ++ +I   +  R YE+A  L
Sbjct: 982  PDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEEL 1041

Query: 465  NEHV-------------LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 511
             E +             L   + R   +++     L + +E+ +  TI T+ ++    G 
Sbjct: 1042 FEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGK 1101

Query: 512  LQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
               P  A   E +++NL  +   L      S+ID +
Sbjct: 1102 SGQPEEA---ENVLKNLRTTGVVLDTLPYSSVIDAY 1134


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 163/365 (44%), Gaps = 2/365 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +  ++ +M       + E    V   ++E G       Y  LI    K GKV    E+  
Sbjct: 424 IDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISK 483

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M  +GI+ N+ TY  LI+G  K    A AF  +       +KPD V++N +ITA    G
Sbjct: 484 MMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMG 543

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA  ++ +M  E H   P   T   ++   A AG++ RA E++ M+ +     T   
Sbjct: 544 NMDRAICMVRQMQKERH--RPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHT 601

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I    +      A ++ D+M   GV P+E   + L+      G  E AF+     +
Sbjct: 602 YNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLR 661

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N+G+ + + +Y +L+ +C  +   Q AL + + M +  +       N LI        + 
Sbjct: 662 NEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVW 721

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  M+  GL P+  TY+  + AC +  D++    ++ + +  G+ PNL  +  +I
Sbjct: 722 EAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLI 781

Query: 452 GMCSR 456
              +R
Sbjct: 782 NGWAR 786



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 152/327 (46%), Gaps = 2/327 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ML++     KD   AF V     + GLK D  LY  +IT     G +D    +  
Sbjct: 494 MKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVR 553

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M      P   T+  +I G A+AG++ +A   + +MR     P    +NALI    +  
Sbjct: 554 QMQKERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKR 613

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            + +A  +L EMN  V  V P+  T   LM+  A+ G  ++A + + ++    ++     
Sbjct: 614 QMTKAVAILDEMN--VAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYT 671

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M+ K +  +    + LID     G V  A +++Q+ +
Sbjct: 672 YEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMR 731

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I +Y+S + AC  A + QKA E+ + M++  +KP + T   LI          
Sbjct: 732 KEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWARASMPE 791

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVA 418
           K +    +MK  G  P+   Y  L+ +
Sbjct: 792 KALSCFEEMKLAGFKPDKAVYHCLVTS 818



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 169/357 (47%), Gaps = 9/357 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   + G++S+ +++ + M+  G+    K Y +   N     K    AF  F+       
Sbjct: 467 NLYTKVGKVSKALEISKMMKMSGIKHNMKTY-SMLINGFLKLKDWANAFSVFEDFTKDGL 525

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N +++      + + A  ++R +Q+   +   + +  +I   A++G++    E
Sbjct: 526 KPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALE 585

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  M  +G  P VHTY ALI G  +  Q+ KA      M    V P+   +  L+    
Sbjct: 586 IFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYA 645

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G  ++AF     +  E   ++ D  T  AL+K+C  +G++  A  V K +   NI   
Sbjct: 646 SLGDTEKAFQYFTVLRNE--GLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRN 703

Query: 269 PEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
             VY I I+  ++ GD WE A  +   M K+G++PD    ++ I+    AG ++ A EI+
Sbjct: 704 TFVYNILIDGWARRGDVWE-AADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEII 762

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           QE +  GI   + +Y++L+   + A   +KAL  +E MK    KP  +  + L+T+L
Sbjct: 763 QEMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDKAVYHCLVTSL 819



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 173/404 (42%), Gaps = 33/404 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P    + +++       D   A Q    ++  G++    +Y++LI   A    +
Sbjct: 276 FERIKKPARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDM 335

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +       +M   GIE  + TY  ++ G AK G    A   +   + K    + V++  +
Sbjct: 336 EEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGI 395

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  Q   +DRA  ++ EM  +    P+D                              
Sbjct: 396 IYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGF 455

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  I+ G L+      G+V +A E+ KM+    IK   + Y++ IN   +  DW  A S
Sbjct: 456 FPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFS 515

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++D TK G+ PD V  + +I      G ++ A  ++++ + +       ++  ++   +
Sbjct: 516 VFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFA 575

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A   ++ALE+++ M+     PTV T NALI  L +  Q+ K + +L +M   G+ PN  
Sbjct: 576 RAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEH 635

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+ L+       D E      +  + +G+  ++  ++ ++  C
Sbjct: 636 TYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSC 679



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 36/171 (21%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M ++GLL                    
Sbjct: 697 AKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLL-------------------- 736

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   ++ C  + D + A ++++ ++ +G+K + K YTTLI   
Sbjct: 737 ------------PDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGW 784

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           A++   +     F EM  AG +P+   Y  L+         A+++   G++
Sbjct: 785 ARASMPEKALSCFEEMKLAGFKPDKAVYHCLVTSLLSRATFAQSYVYSGLL 835



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 79/185 (42%)

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + +    + GD   A   ++ M  +G+ P     S+LI        +E A   +++ K
Sbjct: 287 YGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMK 346

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +GI + I++YS ++G  +   N   A   +E  K             +I A C    + 
Sbjct: 347 EEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICNMD 406

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   ++ +M+  G+      Y  ++       + E  L++  + KE G  P+++ + C+I
Sbjct: 407 RAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLI 466

Query: 452 GMCSR 456
            + ++
Sbjct: 467 NLYTK 471


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 217/492 (44%), Gaps = 35/492 (7%)

Query: 5   GKNMLQFPYP------NGKHANYAH--DVSEQLHSYNRLIRQGRISECIDLLEDMERKGL 56
           G  ML  P P      N  H+   H   + E L ++NR++ +      +D       + L
Sbjct: 23  GTGMLSLPPPFLSSSHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDF-----NRLL 77

Query: 57  LDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL 115
             + K  +H+   ++ +   +          +P P + T  ++++        + AF  L
Sbjct: 78  TSIAKTKHHSTLLSLSRQMDSFG--------IP-PDVYTLAIVINSLCHLNRVDFAFSAL 128

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
             + + G + D   +TTLI      GK+     +F +M+  G +PNV TYG LI+G  K 
Sbjct: 129 AKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKV 188

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G  + A      M   N +P+ VVF+ LI +  +   V  AF++ +EM  +   + P+ +
Sbjct: 189 GNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITK--GISPNIV 246

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYD 293
           T  +L+       +      +  M    + K  P+V+T+   ++   + G    A  V D
Sbjct: 247 TYNSLIHGLCKLCEWKHVTTL--MNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVD 304

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M  +GV P+ V  +AL+D      +V+ A ++     ++     +ISY++L+      +
Sbjct: 305 MMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQ 364

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           +  KA+ L+E M   +L P   T N LI  LC   +L   + +  +M + G  P+ +TY 
Sbjct: 365 SVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYR 424

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSF 471
            L     +   ++  + LL   +     P++ ++  I+ GMC +   E AR L  + LS 
Sbjct: 425 TLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSN-LSS 483

Query: 472 NSGRPQIENKWT 483
              +P   N WT
Sbjct: 484 KGLQP---NVWT 492



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 180/392 (45%), Gaps = 13/392 (3%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K I E F+       P + T+  L++      ++  A ++LR +++   + +  +++TLI
Sbjct: 165 KMIGEGFQ-------PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLI 217

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +  K  +V   F +F EM+  GI PN+ TY +LI G  K  +          M    + 
Sbjct: 218 DSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIM 277

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRA 253
           PD    N ++ A  + G V  A DV+  M   +H  V+P+ +T  ALM       +VD A
Sbjct: 278 PDVFTLNTVVDALCKEGMVAEAHDVVDMM---IHRGVEPNVVTYNALMDGHCLRNEVDVA 334

Query: 254 REVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
            +V+  M+HK  +      Y   IN   +    + A  ++++M+++ + P+ V  + LI 
Sbjct: 335 VKVFDTMVHKDCVANVIS-YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIH 393

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
              H G+++ A  +  E   +G    +++Y +L       ++  KA+ L + ++     P
Sbjct: 394 GLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDP 453

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            +     ++  +C   +L    ++ S++ S GL PN  TY+I++    ++  +     L 
Sbjct: 454 DIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLF 513

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
           S+  ++G  PN   +  I     R  E  RT+
Sbjct: 514 SEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 158/393 (40%), Gaps = 42/393 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + G  S  I LL  ME+        V+     ++CK ++ + EAF  F  +     
Sbjct: 183 NGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQ-VTEAFNIFSEMITKGI 241

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+N L+       + +    ++  + ++ +  D     T++    K G V    +
Sbjct: 242 SPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHD 301

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V   M++ G+EPNV TY AL+DG     +V  A   +  M  K+   + + +N LI    
Sbjct: 302 VVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYC 361

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV------------------ 250
           +  +VD+A  +  EM+ +   + P+ +T   L+    + G++                  
Sbjct: 362 KIQSVDKAMYLFEEMSRQ--ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPD 419

Query: 251 -----------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
                            D+A  + K I   N     ++YT  ++   + G+ E A  ++ 
Sbjct: 420 LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFS 479

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +++ KG+ P+    + +I      G +  A ++  E    G S    +Y+ +        
Sbjct: 480 NLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNN 539

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
              + +EL E M +      VST   L+  L D
Sbjct: 540 EALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 572



 Score = 39.3 bits (90), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 9/160 (5%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      GR+ + I L  +M  +G +     Y      +CK+ + + +A    K 
Sbjct: 387 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKN-RHLDKAMALLKA 445

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P +  +  ++     + + E A  +   +   GL+ +   Y  +I    K G 
Sbjct: 446 IEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGL 505

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           +    ++F EM   G  PN  TY  +  G  +  +  +  
Sbjct: 506 LAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 198/440 (45%), Gaps = 9/440 (2%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTLSTF 95
           RI E   L E M R G+L       A    +C+  +   EA+  F    K+   P   T+
Sbjct: 274 RIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGR-FSEAYALFREMDKIGVAPNHVTY 332

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
              +   A  +    +  +L  +   G+  D  +YTT++    K GK++   +V    ++
Sbjct: 333 CTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALS 392

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
             I PN  TY  L+D   +AG +  A      M  K+V P+ V F++++    + G + +
Sbjct: 393 DNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAK 452

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
           A   + +M      + P+ +T G L+         + A +VY+ M+H+  ++    +   
Sbjct: 453 AAGYMRKMKDS--GIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHE-GVEANNFIVDS 509

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            +N   + G+ E A +++ DM ++G++ D V  + L+D     G + AA ++ QE   + 
Sbjct: 510 LVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERN 569

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +S   + Y+  +        + +A    + M++  L+P  +T N +I+A C      K +
Sbjct: 570 LSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKAL 629

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           ++L++MK   + PN ITY+ L+V       VE    LL++    G  P  + ++ ++  C
Sbjct: 630 KLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQAC 689

Query: 455 SRRYEKARTLNEHVLSFNSG 474
           S        L  H L   +G
Sbjct: 690 SGSRSPYVILEVHELMMGAG 709



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/459 (22%), Positives = 197/459 (42%), Gaps = 42/459 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK--LVPN- 89
           + L +  R++E + LL +M  +G+  MD V +    +    +  I+EA    +  L  N 
Sbjct: 337 DSLAKVQRVNESLGLLGEMVSRGV-AMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNI 395

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+ +L+     + + +GA Q+L  ++E  +  +   +++++    K G +     
Sbjct: 396 TPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAG 455

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              +M ++GI PNV TYG LIDG  K      A   Y  M  + V+ +  + ++L+    
Sbjct: 456 YMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLR 515

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G ++ A  +  +M      +  DH+    LM      G +  A +V + + + N+   
Sbjct: 516 KNGNIEEAEALFKDMGE--RGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPD 573

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             VY + INC  + G +  A S   +M   G+ PD+   + +I      G    A ++L 
Sbjct: 574 AVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLN 633

Query: 329 EAKNQGISVGIISYSSL-----------------------------------MGACSNAK 353
           E K   I   +I+Y++L                                   + ACS ++
Sbjct: 634 EMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSR 693

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           +    LE++E M    L   ++  N L+  LC      K   VL +M   G+ P+TIT++
Sbjct: 694 SPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFN 753

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            L++   +   ++      +Q    G+ PN+  F  ++G
Sbjct: 754 ALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLG 792



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 200/464 (43%), Gaps = 14/464 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAFRFFKLVPNP 90
           N L+++G I++    +  M+  G+      Y      F  C+ Q+A  + +R   L    
Sbjct: 442 NGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDM-LHEGV 500

Query: 91  TLSTF--NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             + F  + L++    + + E A  + + + E GL  D   Y TL+    K+G + A  +
Sbjct: 501 EANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALK 560

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  E++   + P+   Y   I+   + G+ ++A      MR+  ++PD+  +N +I+A  
Sbjct: 561 VGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQC 620

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G   +A  +L EM  +   + P+ IT   L+     AG V++A+ +   +       T
Sbjct: 621 REGNTSKALKLLNEM--KWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPT 678

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P  Y   +  CS +        V++ M   G+  D    + L+      G    A  +L 
Sbjct: 679 PLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLD 738

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   +GI+   I++++L+     + +   A   Y  M    L P ++T N L+  L    
Sbjct: 739 EMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAG 798

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ +   V+ +MK +GL PN +TY IL+    +K +    L L  +    G IP    + 
Sbjct: 799 RIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYN 858

Query: 449 CII------GMCSRRYEKARTLNEH-VLSFNSGRPQIENKWTSL 485
            +I      GM ++  E    +    VL  +S    + N W+ L
Sbjct: 859 SLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKL 902



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 138/298 (46%), Gaps = 11/298 (3%)

Query: 184 AYGIMRSKN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
           A  ++RS +     V  D V +N  +    + G    A  VL+EM     P D   +T+ 
Sbjct: 99  ALSLLRSSSGPQPQVAADTVSYNIFLAGLSEQGHGRLAPPVLSEMCKRGVPWD--GVTMS 156

Query: 239 ALMKACANAGQVDRAREVYKM-IHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMT 296
             +   +  G V  A  + +M +    I G   V +   I+   +  D   A +V + MT
Sbjct: 157 TALVGLSRTGLVGEAAALAEMLVRGRGIDGLGVVGWNALIDGYCKVQDMAAALAVVERMT 216

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            +G+  D V  + L+    ++G  +AA+E+ +  K  G+   ++++++L+G     K  +
Sbjct: 217 TQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIE 276

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A  LYE M    + P V T++AL+  LC   +  +   +  +M  +G+ PN +TY   +
Sbjct: 277 EAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFI 336

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472
            +  +   V   L LL +    GV  +LVM+  ++    +  + E+A+ +  H LS N
Sbjct: 337 DSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDN 394



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 113/500 (22%), Positives = 215/500 (43%), Gaps = 24/500 (4%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ--EAGL 123
           R      S   +  A RF + VP   L+  ++++S C S      A  +LR     +  +
Sbjct: 56  RLIPALASSGLVAAASRF-RPVPGDPLTLNSIILSYC-SLHALRPALSLLRSSSGPQPQV 113

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
            AD   Y   +   ++ G       V  EM   G+  +  T    + G ++ G V +A  
Sbjct: 114 AADTVSYNIFLAGLSEQGHGRLAPPVLSEMCKRGVPWDGVTMSTALVGLSRTGLVGEAAA 173

Query: 184 -AYGIMRSKNVKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
            A  ++R + +    VV +NALI    +   +  A  V+  M  +   +  D +    L+
Sbjct: 174 LAEMLVRGRGIDGLGVVGWNALIDGYCKVQDMAAALAVVERMTTQ--GLSLDVVGYNTLV 231

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
                +G  D A EV + +    ++ +   +T  I    +    E A ++Y+ M + GV+
Sbjct: 232 AGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVL 291

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD V LSAL+D     G+   A+ + +E    G++   ++Y + + + +  +   ++L L
Sbjct: 292 PDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGL 351

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
              M S  +   +     ++  L    ++ +  +VL    S  + PN +TY++L+ A  R
Sbjct: 352 LGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCR 411

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR----------RYEKARTLNEHVLS 470
             +++    +L Q +E  V PN+V F  I+ G+  R          R  K   +  +V++
Sbjct: 412 AGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVT 471

Query: 471 FNS---GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 527
           + +   G  + + +    AL VYR+ +  G      +V  ++  L+   N +  E L ++
Sbjct: 472 YGTLIDGFFKCQGQ--EAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKD 529

Query: 528 LGVSADALKRSNLCSLIDGF 547
           +G     L   N  +L+DG 
Sbjct: 530 MGERGLLLDHVNYATLMDGL 549


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 191/427 (44%), Gaps = 44/427 (10%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +     +YN L+    R GR+ E   LL++M                     SQK + 
Sbjct: 127 HGLKPNAITYNVLLSGLCRAGRMGETSALLDEM--------------------ASQKMVP 166

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           + F            T+++L    + + DS+    +     + G+       + L+    
Sbjct: 167 DGF------------TYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLC 214

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K GKV    EV   +VNAG+ P    Y  LI+G  + G++  AF  +G M+S+++KPD +
Sbjct: 215 KDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHI 274

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +NALI    ++  +  A D+L EM  + + V+P   T   L+ A    GQ+++   V  
Sbjct: 275 TYNALINGLCKAERITNAQDLLMEM--QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLS 332

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + +  +K     Y   +N   + G    A ++ DDM  K V+P+    +A+ID     G
Sbjct: 333 EMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHG 392

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
             + AF ++++ K+ GIS  I++Y+ L+    N     +A E+   + + +L P   + N
Sbjct: 393 PNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYN 452

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQA 435
            LI+A C    + K +++   M   G+     TY  L   L    R +++E    L  + 
Sbjct: 453 TLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLNEMEY---LYQKM 509

Query: 436 KEDGVIP 442
            ++ V+P
Sbjct: 510 MQNNVVP 516



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 202/432 (46%), Gaps = 17/432 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF--- 83
           SYN +I    R GR  + +++ ++M  + +L     Y+       K    ++  FR    
Sbjct: 65  SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGD-LEAGFRLRDQ 123

Query: 84  ---FKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                L PN    T+N+L+S +C + +  E +  +L  +    +  D   Y+ L    ++
Sbjct: 124 MVCHGLKPNAI--TYNVLLSGLCRAGRMGETS-ALLDEMASQKMVPDGFTYSILFDGLSR 180

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +G   AM  +F + +  G+    +T   L++G  K G+V+ A      + +  + P RV+
Sbjct: 181 NGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVI 240

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +N LI    Q+G ++ AF    +M +    + PDHIT  AL+     A ++  A+++   
Sbjct: 241 YNTLINGYCQTGELEGAFSTFGQMKSR--HIKPDHITYNALINGLCKAERITNAQDLLME 298

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +    +  T E +   I+   +TG  E    V  +M + G+ P+ V   ++++     GK
Sbjct: 299 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 358

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +  A  IL +  ++ +      Y++++ A        +A  L E MKS  + P++ T N 
Sbjct: 359 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 418

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI  LC+  Q+ +  E+++ + +  L P+ ++Y+ L+ AC  + +++  L L  +  + G
Sbjct: 419 LIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 478

Query: 440 VIPNLVMFKCII 451
           +   +  +  +I
Sbjct: 479 IKSTVRTYHQLI 490



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 173/370 (46%), Gaps = 3/370 (0%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P   ++N++++    +     A +V   + E  +  +   Y T+I    K G ++A F
Sbjct: 59  PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 118

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +  +MV  G++PN  TY  L+ G  +AG++ +       M S+ + PD   ++ L    
Sbjct: 119 RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 178

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G       +  +     + V     T   L+      G+V  A EV + +    +  
Sbjct: 179 SRNGDSKAMLSLFGKYLK--NGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 236

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T  +Y   IN   QTG+ E A S +  M  + + PD +  +ALI+    A ++  A ++L
Sbjct: 237 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 296

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E ++ G++  + ++++L+ A       +K   +   M+   LKP V +  +++ A C  
Sbjct: 297 MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 356

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++P+ + +L DM    + PN   Y+ ++ A       +   +L+ + K +G+ P++V +
Sbjct: 357 GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTY 416

Query: 448 KCII-GMCSR 456
             +I G+C++
Sbjct: 417 NLLIKGLCNQ 426



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 139/313 (44%), Gaps = 13/313 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    + G +         M+ + +      Y+A    +CK+++         ++ 
Sbjct: 241 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 300

Query: 88  PN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            N   PT+ TFN L+     +   E  F VL  +QE GLK +   Y +++    K+GK+ 
Sbjct: 301 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 360

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  +M +  + PN   Y A+ID   + G   +AF     M+S  + P  V +N LI
Sbjct: 361 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 420

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                   +  A +++  ++   H + PD ++   L+ AC   G +D+A ++ + +HKY 
Sbjct: 421 KGLCNQSQISEAEEIINSLSN--HRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYG 478

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAA 323
           IK T   Y   I+     G       +Y  M +  V+P     + +++ ++ +  +++A 
Sbjct: 479 IKSTVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAE 538

Query: 324 ---FEILQEAKNQ 333
               E+LQ+  N 
Sbjct: 539 DLRKEMLQKRNNH 551



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 133/345 (38%), Gaps = 69/345 (20%)

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP------ 229
           G+ A    A+GI+ S   +PD   +N  + AC  +G +  A  +L  M  +  P      
Sbjct: 6   GRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFS 65

Query: 230 ----------------------------VDPDHITIGALMKACANAGQVDRAREVYKMIH 261
                                       V P+HIT   ++      G ++    +   + 
Sbjct: 66  YNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMV 125

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
            + +K     Y + ++   + G      ++ D+M  + ++PD    S L D     G  +
Sbjct: 126 CHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSK 185

Query: 322 AAFEILQEAKNQGISVGIISYSSLM-GACSNAK--------------------------- 353
           A   +  +    G+++G  + S L+ G C + K                           
Sbjct: 186 AMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLI 245

Query: 354 -------NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                    + A   +  MKS  +KP   T NALI  LC  +++    ++L +M+  G+ 
Sbjct: 246 NGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVN 305

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           P   T++ L+ A  R   +E   ++LS+ +E+G+ PN+V +  I+
Sbjct: 306 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIV 350


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/482 (25%), Positives = 202/482 (41%), Gaps = 53/482 (10%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           H  ++ LHS+ R         C+       R  L   + V  A   +   S +A  +AF 
Sbjct: 153 HLAAQLLHSFRR-------RGCV-------RPSLQAANAVLSALARSPSTSPQASLDAFH 198

Query: 83  -FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
               L  +P   TFN+L+    S      A   L  +Q  GL  D   Y TL+    + G
Sbjct: 199 SLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKG 258

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +     +   M   GI P   TY  L+   A+ G + +A      M +   +PD   +N
Sbjct: 259 MLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYN 318

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            L     Q+G VD AF +  EM  ++  V PD +T   L+ AC    +   A  + + + 
Sbjct: 319 VLAAGLCQAGKVDEAFKLKDEME-QLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMR 377

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +K +   + I +    + G  E A    + MT++G+ PD +  + LID +  AG V 
Sbjct: 378 EKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVA 437

Query: 322 AAF-----------------------------------EILQEAKNQGISVGIISYSSLM 346
            AF                                   E+L+    +G     +SY ++M
Sbjct: 438 KAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVM 497

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A       + AL L++ M   KL P++ST N LI  L    +L + ++ L+++  +GL 
Sbjct: 498 AAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLV 557

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
           P+  TY+I++ A  ++ D+E      ++  E+   P++V    ++ G+C   R EKA  L
Sbjct: 558 PDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKL 617

Query: 465 NE 466
            E
Sbjct: 618 FE 619



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 126/511 (24%), Positives = 225/511 (44%), Gaps = 30/511 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQKAIKEA 80
           +YN L+    R+G + E   LL  M+++G++     Y      +AR   + K    + EA
Sbjct: 246 TYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWI-KQATDVVEA 304

Query: 81  FRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCA 138
              F   P+  L T+N+L + +C + K  E AF++   +++ G+   D   Y TL+  C 
Sbjct: 305 MTAFGFEPD--LWTYNVLAAGLCQAGKVDE-AFKLKDEMEQLGIVSPDVVTYNTLVDACF 361

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K  +      +  EM   G++ ++ T+  ++ G  + GQ+ +A G   +M  + + PD +
Sbjct: 362 KCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVI 421

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +N LI A  ++G V +AF ++ EM      +  D  T+  L+       + + A E+ +
Sbjct: 422 TYNTLIDASCKAGNVAKAFVLMDEMVRS--GLKMDTFTLNTLLYNLCKEKRYEEAEELLR 479

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
              +         Y   +    +    E A  ++D+M K+ + P     + LI      G
Sbjct: 480 APPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMG 539

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           K+  A + L E    G+     +Y+ ++ A     + +KA + +  M     KP V T N
Sbjct: 540 KLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCN 599

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            L+  LC   +L K M++       G   + ITY+ L+ A  + +DV+  L   +  +  
Sbjct: 600 TLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDVDTALRFFADMEVR 659

Query: 439 GVIPNLVMFKCIIGMCS---RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 495
           G+ P++  +  ++   S   R  E  + L  H L+  SG+      + S+   V  EA+ 
Sbjct: 660 GLQPDVFTYNVLLSALSEAGRSVEAQKML--HKLN-ESGKLYGRFFYPSIKSSV--EAVE 714

Query: 496 AGTIPTV----EVVSKVLGCLQLPYNADIRE 522
            G  P V    E V    G  Q  YN  I+E
Sbjct: 715 TGKDPEVKSDIESVGNTQGDDQESYNKYIKE 745


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 125/480 (26%), Positives = 214/480 (44%), Gaps = 25/480 (5%)

Query: 110 GAFQVLRLVQEAGLKA---DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           G F+ + L++E G K+   D   Y TLI    K+ K+     +  EM  AG  PN  T  
Sbjct: 13  GVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCT 72

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            L+DG  K G++ +A      M+ K    D V++  LI+    +G +DR  ++  EM  +
Sbjct: 73  TLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGK 132

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              +  + +T   L+      GQ   A  V   + ++ I      YT  I+   + G   
Sbjct: 133 --GISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRAT 190

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  + + M +KG  P  V  + L+      G V  AF+IL+    +G    +++Y++LM
Sbjct: 191 HAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLM 250

Query: 347 GACSNAKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
               +     +AL+L+  M   +  L+P V T N LI  LC   +L K +++   M   G
Sbjct: 251 KGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKG 310

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR------ 457
            C N +TY++LL  C +   ++  + L  Q  + G +PN   +  +I G C  R      
Sbjct: 311 SCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAK 370

Query: 458 --YEKART--LNEHVLSFNSGRPQIENKWT-SLALMVYREAIVAGTIPTV----EVVSKV 508
             + + RT  LN  +  +N+    +  + +   A  +++E   A   P +     ++   
Sbjct: 371 GLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGT 430

Query: 509 LGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
           L      +  +++ ++VE +G+  DAL  S L + +   GE D  A S LE   + G  P
Sbjct: 431 LKAGDFQFVKELQMKMVE-MGLRPDALTFSTLINRLSKLGELD-EAKSALERMVASGFTP 488



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 104/482 (21%), Positives = 199/482 (41%), Gaps = 28/482 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L + GR+ E ++LLE M++KG  D D V +    +   +   +      F  +    +S 
Sbjct: 78  LCKDGRMDEAMELLEAMKKKGF-DADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISA 136

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T++ L+         + A  VL  + E G+  D   YT LI    K G+     ++ 
Sbjct: 137 NVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL 196

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           + MV  G EP+  TY  L+ G  K G V  AF    +M  K  K D V +N L+      
Sbjct: 197 NLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDK 256

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G VD A  +   M    + ++P+  T   L+      G++ +A ++++ + K    G   
Sbjct: 257 GKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLV 316

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y + +  C + G  + A  ++  +   G +P+    S LID       +  A  +  E 
Sbjct: 317 TYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEM 376

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           +  G++  +  Y++LM +     + ++A  L++ M +   +P + + N +I         
Sbjct: 377 RTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDF 436

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
               E+   M  +GL P+ +T+S L+    +  +++     L +    G  P+ +++  +
Sbjct: 437 QFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSL 496

Query: 451 IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 510
           +   S + +    +N                       +  +    GT+   ++VS +L 
Sbjct: 497 LKGLSSKGDTTEIIN-----------------------LLHQMAAKGTVLDRKIVSTILT 533

Query: 511 CL 512
           CL
Sbjct: 534 CL 535



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/425 (24%), Positives = 186/425 (43%), Gaps = 13/425 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVP 88
           L R G + E + L+ +M RK +      Y+     +CK++K +KEA             P
Sbjct: 8   LCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKK-LKEAVGLLLEMEAAGCFP 66

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N    T  ++  +C   +  E A ++L  +++ G  AD  LY TLI+    +G +D   E
Sbjct: 67  NSVTCT-TLMDGLCKDGRMDE-AMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKE 124

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM+  GI  NV TY  L+ G  + GQ  +A      M    + PD V +  LI    
Sbjct: 125 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLC 184

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G    A D+L  M  +    +P ++T   L+      G V  A ++ +M+ +   K  
Sbjct: 185 KDGRATHAMDLLNLMVEKGE--EPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKAD 242

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDM--TKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
              Y   +      G  + A  +++ M   +  + P+    + LI      G++  A +I
Sbjct: 243 VVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKI 302

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            ++   +G    +++Y+ L+G C  A   ++A+EL++ +  +   P   T + LI   C 
Sbjct: 303 HRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCK 362

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L     +  +M++ GL P    Y+ L+ +  ++  +E    L  +       P+++ 
Sbjct: 363 MRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIIS 422

Query: 447 FKCII 451
           F  +I
Sbjct: 423 FNTMI 427



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 141/353 (39%), Gaps = 47/353 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    ++G + +   +L  M  KG       Y+     +C   K + EA + F  
Sbjct: 210 TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGK-VDEALKLFNS 268

Query: 87  VPN------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +      P + TFNML+           A ++ R + + G   +   Y  L+  C K+
Sbjct: 269 MFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKA 328

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK+    E++ ++++ G  PN  TY  LIDG  K   +  A G +  MR+  + P    +
Sbjct: 329 GKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDY 388

Query: 201 NALITACGQSGAVDRAFDVLAEM-NAEVHP------------------------------ 229
           N L+ +  + G++++A  +  EM NA   P                              
Sbjct: 389 NTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVE 448

Query: 230 --VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD +T   L+   +  G++D A+   + +          VY   +   S  GD   
Sbjct: 449 MGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTE 508

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ---EAKNQGISV 337
             ++   M  KG + D   +S ++    H+ +     E+L    +  ++G S+
Sbjct: 509 IINLLHQMAAKGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASI 561



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 6/214 (2%)

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
           C N G  +    + +M  K     +P++  Y   IN   +    + A  +  +M   G  
Sbjct: 9   CRNGGVFEAMGLIREMGRK---SVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCF 65

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P+ V  + L+D     G+++ A E+L+  K +G    ++ Y +L+    N  N  +  EL
Sbjct: 66  PNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKEL 125

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           ++ M    +   V T + L+  LC   Q  +   VL+ M   G+ P+ +TY+ L+    +
Sbjct: 126 FDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK 185

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
                  + LL+   E G  P+ V +  ++ G+C
Sbjct: 186 DGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLC 219


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 167/370 (45%), Gaps = 7/370 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T++ L+S        + A ++L  ++E G++   K+YT +I+   K   V     
Sbjct: 227 QPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALS 286

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM      P+V TY  LI G  KAG++ +A+  Y  M+ +  KPD VV N +I   G
Sbjct: 287 LFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLG 346

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN---I 265
           ++G +D    +  EM   V    P+ +T   ++KA   +    R  EV+    +     I
Sbjct: 347 KAGRLDDGLKLFEEMG--VSHCIPNVVTYNTIIKALFESK--SRVSEVFSWFERMKGSGI 402

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
             +P  Y+I I+   +T   E A  + ++M +KG  P      +LID  G A + + A E
Sbjct: 403 SPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACE 462

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + QE K    S     Y+ ++     A     A+ L++ M  +   P V   NAL++ L 
Sbjct: 463 LFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLA 522

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L + +  +  M+  G  P+  +Y+I+L    +       + +L+  K   + P+ V
Sbjct: 523 RACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAV 582

Query: 446 MFKCIIGMCS 455
            +  ++   S
Sbjct: 583 SYNTVLSALS 592



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 188/403 (46%), Gaps = 14/403 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIK--EAF 81
           +Y+ LI    + GR    I LL +M+  G+    K+Y    + FF +     A+   E  
Sbjct: 232 TYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R+  +   P + T+  L+     +   + A+     +Q  G K D  +   +I    K+G
Sbjct: 292 RY--MYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAG 349

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-GQVAKAFGAYGIMRSKNVKPDRVVF 200
           ++D   ++F EM  +   PNV TY  +I    ++  +V++ F  +  M+   + P    +
Sbjct: 350 RLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTY 409

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + LI    ++  +++A  +L EM+ +  P  P      +L+ A   A + D A E+++ +
Sbjct: 410 SILIDGFCKTNRIEKAMMLLEEMDEKGFP--PCPAAYCSLIDALGKAKRYDLACELFQEL 467

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            +     +  VY + I    + G  + A +++D+M+K G  P+    +AL+     A  +
Sbjct: 468 KENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACML 527

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A   +++ +  G    I SY+ ++   +      +A+E+  +MK+  +KP   + N +
Sbjct: 528 DEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTV 587

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
           ++AL       +  E++ +M +LG   + ITYS +L A  + D
Sbjct: 588 LSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVD 630



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 113/264 (42%), Gaps = 21/264 (7%)

Query: 324 FEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           ++++QE     I V   +  S ++    NAK   KA+ ++  +K+ K +PT    N++I 
Sbjct: 143 WKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMII 202

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            L    Q  K  E+ ++M + G C P+T+TYS L+ A  +    +  + LL++ KE+G+ 
Sbjct: 203 MLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQ 262

Query: 442 PNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSL------------AL 487
           P   ++  II +  +      A +L E  + +   RP +   +T L            A 
Sbjct: 263 PTAKIYTMIISLFFKLDNVHGALSLFEE-MRYMYCRPDVFT-YTELIRGLGKAGRIDEAY 320

Query: 488 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
             Y E    G  P   V++ ++  L      D   +L E +GVS          ++I   
Sbjct: 321 HFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL 380

Query: 548 GEYDPR---AFSLLEEAASFGIVP 568
            E   R    FS  E     GI P
Sbjct: 381 FESKSRVSEVFSWFERMKGSGISP 404



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 151/379 (39%), Gaps = 45/379 (11%)

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
           AE   EV  +  DH  +  +MK   + G   + +       K N +     Y   I+C  
Sbjct: 77  AERALEVLMLRVDHWLVREVMKT--DVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLE 134

Query: 281 QTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
               +     +  +M +     V P E  LS +I   G+A  +  A  I  + K +    
Sbjct: 135 LVEQYGEMWKMIQEMVRSPICVVTPME--LSQVIRMLGNAKMIGKAITIFYQIKARKCQP 192

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEV 396
              +Y+S++    +   ++K  ELY  M +    +P   T +ALI+A C   +    + +
Sbjct: 193 TAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRL 252

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L++MK  G+ P    Y++++    + D+V   L L  + +     P++  +  +I    R
Sbjct: 253 LNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELI----R 308

Query: 457 RYEKARTLNE-----HVLSFNSGRPQ--IENKWTSL---------ALMVYREAIVAGTIP 500
              KA  ++E     H +     +P   + N   +           L ++ E  V+  IP
Sbjct: 309 GLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIP 368

Query: 501 TVEVVSKVLGCLQLPYNADIR--------ERLVENLGVSADALKRSNLCSLIDGFGEYD- 551
            V   + ++  L   + +  R        ER+ +  G+S      S    LIDGF + + 
Sbjct: 369 NVVTYNTIIKAL---FESKSRVSEVFSWFERM-KGSGISPSPFTYS---ILIDGFCKTNR 421

Query: 552 -PRAFSLLEEAASFGIVPC 569
             +A  LLEE    G  PC
Sbjct: 422 IEKAMMLLEEMDEKGFPPC 440


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 209/471 (44%), Gaps = 31/471 (6%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLI--RQGRISECID-LLEDMERKGLLDMDKV 62
           +++L      G H + A  + + LH     +  R+  +   +D LL  +  +GLLD    
Sbjct: 90  RSLLSRLLAPGHHPHLAASLVDLLHRAALALGPRRSALPSVVDTLLSLLADRGLLD---- 145

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
                        A+    R  +L   P   T N ++   A  + SE A+++   +    
Sbjct: 146 ------------DAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWRLFEQLPAPN 193

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           +      +  +I    K G +     +   M   G  P+V TY +LIDG  K G++ +  
Sbjct: 194 VFT----FNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVE 249

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
              G MR    +PD V +NAL+    + G ++RA+   AEM  E   V  + +T    + 
Sbjct: 250 KLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKRE--GVMANVVTFSTFVD 307

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
           A    G V  A +++  +    +K     YT  ++   + G  + A  + ++M ++GV  
Sbjct: 308 AFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPL 367

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           + V  + L+D     GKV  A ++ +  +  GI    + Y++L+      KN ++AL L 
Sbjct: 368 NVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLL 427

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
             MK   ++  VS   ALI  LC+  +L +   +L+ M   GL PN + Y+ ++ AC + 
Sbjct: 428 SEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKA 487

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFN 472
                 + LL +  + G  PN+V +  ++ G+C     KA +++E +  FN
Sbjct: 488 RKESEAIALLQKMMDSGFRPNIVTYCALVDGLC-----KAGSIDEAISHFN 533



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/444 (22%), Positives = 191/444 (43%), Gaps = 46/444 (10%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN LI    + G + E   L+ +M   G       Y+A     CK  + ++ A+
Sbjct: 226 SPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGR-MERAY 284

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            +F  +        + TF+  +     +     A ++   ++  G+K +   YT L+   
Sbjct: 285 SYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGT 344

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K+G++D    + +EMV  G+  NV TY  L+DG  K G+VA+A   + +M    ++ + 
Sbjct: 345 CKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANE 404

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           +++  LI         +RA  +L+EM  +   +D      GAL+    N  ++D A+ + 
Sbjct: 405 LLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVS--LYGALIWGLCNLQKLDEAKSLL 462

Query: 258 KMIHKYNIKGTPEVYTIAINCC-----------------------------------SQT 282
             + +  +K    +YT  ++ C                                    + 
Sbjct: 463 NKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKA 522

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G  + A S ++ M   G+ P+    +AL+D     G+++ A  +L E  ++G+S+  +  
Sbjct: 523 GSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVC 582

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           +SLM       N Q A  L   M +  L+  +      +   C+ + + +  EVLS+M  
Sbjct: 583 TSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIE 642

Query: 403 LGLCPNTITYSILLVACERKDDVE 426
            G+ P+ + Y+ L+  C++  ++E
Sbjct: 643 NGITPDAVVYNCLINKCQKLGNME 666



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 165/377 (43%), Gaps = 9/377 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVPNPT 91
           + G + E + L   M  KG+   +  Y       CK+ + + +A         + VP   
Sbjct: 311 KNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGR-LDDALVLTNEMVQQGVPLNV 369

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++   ++  +C   K +E A  V RL++ AG++A+  LYTTLI         +    +  
Sbjct: 370 VTYTVLVDGLCKEGKVAE-AEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLS 428

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM + G+E +V  YGALI G     ++ +A      M    +KP+ V++  ++ AC ++ 
Sbjct: 429 EMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKAR 488

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
               A  +L +M        P+ +T  AL+     AG +D A   +  +    ++   + 
Sbjct: 489 KESEAIALLQKMMDS--GFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQA 546

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           YT  ++   + G  + A  + D+M  KG+  D V  ++L+D     G ++ AF +  +  
Sbjct: 547 YTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMI 606

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N G+ + +  Y+  +    N    Q+A E+   M    + P     N LI        + 
Sbjct: 607 NSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNME 666

Query: 392 KTMEVLSDMKSLGLCPN 408
           +   + ++M+SL  C N
Sbjct: 667 EAAILQNEMESLLSCTN 683


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 209/481 (43%), Gaps = 50/481 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPNP--- 90
           L +Q R+   +DLL++M R G+   D V +      C      ++  R + KLV +P   
Sbjct: 203 LAKQDRLDHALDLLDEMPRSGV-QPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGAR 261

Query: 91  -TLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             L+T+N ML  +C   +  E      R+V    L+ D   Y  LI    +SG VD    
Sbjct: 262 PNLATYNVMLDGLCKFGRFKEVGEVWERMVAN-NLQPDVITYGILIHGLCRSGDVDGAAR 320

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF------GAYGI--MRSKNVK------ 194
           V+ E++  G+  +   Y +L+ G  +AG+V +A+      G  G+  +R+ N+       
Sbjct: 321 VYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFD 380

Query: 195 ---------------------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
                                PD V F  LI    Q+G  ++AF +  E  A V     D
Sbjct: 381 SGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE--ARVSGKQLD 438

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             +  +++    N G++  A +VY+ + K   K    +Y   I+   Q      A  +Y 
Sbjct: 439 VFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYS 498

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M   G  P  +  + LID    A K + A  + +E    G +  I +Y SL+    + K
Sbjct: 499 KMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDK 558

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITY 412
               AL +++ +    LK  V   N LI  LC   ++ + + V SDMK    C PN +TY
Sbjct: 559 KIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTY 618

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMCS--RRYEKARTLNEHVL 469
           + L+        ++    L +   EDG+ P+++ +   I G+CS  R +E  + L+E VL
Sbjct: 619 NTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDE-VL 677

Query: 470 S 470
           S
Sbjct: 678 S 678



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 181/418 (43%), Gaps = 40/418 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T+N+++    +  D + A  +   ++   +  DC  Y+TL+   AK  ++D   ++
Sbjct: 156 PNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDL 215

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG-IMRSKNVKPDRVVFNALITACG 208
             EM  +G++P+V  Y AL+ GC KAG+  K    +  +++    +P+   +N ++    
Sbjct: 216 LDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLC 275

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G      +V   M A  + + PD IT G L+     +G VD A  VY  I K  +   
Sbjct: 276 KFGRFKEVGEVWERMVA--NNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVID 333

Query: 269 PEVYTIAINCCSQTGD----WEFACS------------------VYD-----------DM 295
             +Y   +    Q G     W+F  S                  ++D           D+
Sbjct: 334 AAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDL 393

Query: 296 TKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            +K V  IPD V    LI      G    AF I +EA+  G  + + SYSS++    N  
Sbjct: 394 LEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVG 453

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
               A+++YE M     KP     NALI+  C   +    + + S M   G  P  ITY+
Sbjct: 454 RLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYN 513

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVL 469
            L+    + +  +    +  +  E+G  P++  +  +I G+ S ++ + A ++ + +L
Sbjct: 514 TLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQIL 571



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 160/376 (42%), Gaps = 22/376 (5%)

Query: 144 DAMF-EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           DA F  + H      I PN+ TY  ++      G + +A   +  +R + V PD + ++ 
Sbjct: 139 DAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYST 198

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIH 261
           L+    +   +D A D+L EM      V PD +   AL+  C  AG+ ++   V+ K++ 
Sbjct: 199 LMCGLAKQDRLDHALDLLDEMPRS--GVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVK 256

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
               +     Y + ++   + G ++    V++ M    + PD +    LI     +G V+
Sbjct: 257 DPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVD 316

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +  E    G+ +    Y+SL+     A   Q+A + ++      L+  + T N +I
Sbjct: 317 GAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMI 375

Query: 382 TALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
             L D   + + +E+   + K +   P+T+T+  L+    +         +  +A+  G 
Sbjct: 376 KGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGK 435

Query: 441 IPNLVMFKCII-GMCS--------RRYEKAR----TLNEHVL-SFNSGRPQIENKWTSLA 486
             ++  +  +I G+C+        + YEK        N H+  +  SG  Q+    TS A
Sbjct: 436 QLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYR--TSDA 493

Query: 487 LMVYREAIVAGTIPTV 502
           + +Y +    G  PTV
Sbjct: 494 VRIYSKMADNGCSPTV 509



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 113/249 (45%), Gaps = 10/249 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L   GR+ + + + E M++ G      +Y+A     C+  +       + K+  N   
Sbjct: 447 NGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCS 506

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ T+N L+     ++  + A  V R + E G   D   Y +LI       K+D    +
Sbjct: 507 PTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSI 566

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVVFNALITACG 208
           + +++  G++ +V  +  LI G   AG+V +A   +  M+  KN  P+ V +N L+    
Sbjct: 567 WKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLY 626

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
           ++G +D+A  +   +  +   ++PD I+    +K   +    DR  E  +++ +   +G 
Sbjct: 627 ETGYIDKAATLWTSITED--GLEPDIISYNTRIKGLCSC---DRIHEGIQLLDEVLSRGI 681

Query: 268 TPEVYTIAI 276
            P V T  I
Sbjct: 682 IPTVITWNI 690



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 74/151 (49%), Gaps = 6/151 (3%)

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALITALCDGDQ 389
           G + GI S+++L+ A   A+ +  A   +  +       ++ P + T N ++ +LC    
Sbjct: 114 GCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGD 173

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L + + +   ++   + P+ ITYS L+    ++D ++  L LL +    GV P++V +  
Sbjct: 174 LDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNA 233

Query: 450 IIGMCSR--RYEKARTLNEHVLSFNSGRPQI 478
           ++G C +   +EK   + + ++     RP +
Sbjct: 234 LLGGCFKAGEFEKVMRVWDKLVKDPGARPNL 264


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 217/492 (44%), Gaps = 35/492 (7%)

Query: 5   GKNMLQFPYP------NGKHANYAH--DVSEQLHSYNRLIRQGRISECIDLLEDMERKGL 56
           G  ML  P P      N  H+   H   + E L ++NR++ +      +D       + L
Sbjct: 23  GTGMLSLPPPFLSSSHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDF-----NRLL 77

Query: 57  LDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL 115
             + K  +H+   ++ +   +          +P P + T  ++++        + AF  L
Sbjct: 78  TSIAKTKHHSTLLSLSRQMDSFG--------IP-PDVYTLAIVINSLCHLNRVDFAFSAL 128

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
             + + G + D   +TTLI      GK+     +F +M+  G +PNV TYG LI+G  K 
Sbjct: 129 AKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKV 188

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G  + A      M   N +P+ VVF+ LI +  +   V  AF++ +EM  +   + P+ +
Sbjct: 189 GNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITK--GISPNIV 246

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYD 293
           T  +L+       +      +  M    + K  P+V+T+   ++   + G    A  V D
Sbjct: 247 TYNSLIHGLCKLCEWKHVTTL--MNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVD 304

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M  +GV P+ V  +AL+D      +V+ A ++     ++     +ISY++L+      +
Sbjct: 305 MMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQ 364

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           +  KA+ L+E M   +L P   T N LI  LC   +L   + +  +M + G  P+ +TY 
Sbjct: 365 SVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYR 424

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSF 471
            L     +   ++  + LL   +     P++ ++  I+ GMC +   E AR L  + LS 
Sbjct: 425 TLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSN-LSS 483

Query: 472 NSGRPQIENKWT 483
              +P   N WT
Sbjct: 484 KGLQP---NVWT 492



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 180/392 (45%), Gaps = 13/392 (3%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K I E F+       P + T+  L++      ++  A ++LR +++   + +  +++TLI
Sbjct: 165 KMIGEGFQ-------PNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLI 217

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +  K  +V   F +F EM+  GI PN+ TY +LI G  K  +          M    + 
Sbjct: 218 DSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIM 277

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRA 253
           PD    N ++ A  + G V  A DV+  M   +H  V+P+ +T  ALM       +VD A
Sbjct: 278 PDVFTLNTVVDALCKEGMVAEAHDVVDMM---IHRGVEPNVVTYNALMDGHCLRNEVDVA 334

Query: 254 REVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
            +V+  M+HK  +      Y   IN   +    + A  ++++M+++ + P+ V  + LI 
Sbjct: 335 VKVFDTMVHKDCVANVIS-YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIH 393

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
              H G+++ A  +  E   +G    +++Y +L       ++  KA+ L + ++     P
Sbjct: 394 GLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDP 453

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            +     ++  +C   +L    ++ S++ S GL PN  TY+I++    ++  +     L 
Sbjct: 454 DIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLF 513

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
           S+  ++G  PN   +  I     R  E  RT+
Sbjct: 514 SEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 158/393 (40%), Gaps = 42/393 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + G  S  I LL  ME+        V+     ++CK ++ + EAF  F  +     
Sbjct: 183 NGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQ-VTEAFNIFSEMITKGI 241

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+N L+       + +    ++  + ++ +  D     T++    K G V    +
Sbjct: 242 SPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHD 301

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V   M++ G+EPNV TY AL+DG     +V  A   +  M  K+   + + +N LI    
Sbjct: 302 VVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYC 361

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV------------------ 250
           +  +VD+A  +  EM+ +   + P+ +T   L+    + G++                  
Sbjct: 362 KIQSVDKAMYLFEEMSRQ--ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPD 419

Query: 251 -----------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
                            D+A  + K I   N     ++YT  ++   + G+ E A  ++ 
Sbjct: 420 LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFS 479

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +++ KG+ P+    + +I      G +  A ++  E    G S    +Y+ +        
Sbjct: 480 NLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNN 539

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
              + +EL E M +      VST   L+  L D
Sbjct: 540 EALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 572



 Score = 39.3 bits (90), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 9/160 (5%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      GR+ + I L  +M  +G +     Y      +CK+ + + +A    K 
Sbjct: 387 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKN-RHLDKAMALLKA 445

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P +  +  ++     + + E A  +   +   GL+ +   Y  +I    K G 
Sbjct: 446 IEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGL 505

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           +    ++F EM   G  PN  TY  +  G  +  +  +  
Sbjct: 506 LAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTI 545


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/488 (23%), Positives = 217/488 (44%), Gaps = 24/488 (4%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS-TFN 96
           + E  +LL +ME +G+      Y    + +C++ K +K A+ F +++     P  S  FN
Sbjct: 229 LEEAQELLSEMEVEGVRPNAATYGTYLYGLCRA-KQVKSAWNFLQMLCQRGYPCNSYCFN 287

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
            ++           A +V   +++ G   D   Y+ L+    K G V   + +  EM   
Sbjct: 288 AVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARN 347

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           GI PN+ +Y +L+ G  +AG+V  AF  +  ++ +  K D +V++ ++  C Q   ++  
Sbjct: 348 GITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEIC 407

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
           +D+  +M    H   PD     +L+ A     Q+  A EV++++    I       TI +
Sbjct: 408 YDLWNDMVH--HNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILV 465

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
           +  S  G    A    D + + GV+P+      +I+      K    + I  +   +G  
Sbjct: 466 HGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYV 525

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
              + YS ++     A + Q+A  LY  M     KP + T  +LI  LC  D+LP+ M +
Sbjct: 526 PDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTL 585

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
              M   GL P+ I Y+ L+    ++ +++  L +  + + +G+  +  ++ C+IG  S+
Sbjct: 586 FKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSK 645

Query: 457 --RYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTV 502
               + A+   E ++  N G       +T L            A+++Y   + AG  P  
Sbjct: 646 VLAMDGAQLFMEEMM--NKGLTPTVVTYTDLIIGYFKIGDEKKAMVMYNSMLQAGIAPDA 703

Query: 503 EVVSKVLG 510
           + +S +LG
Sbjct: 704 K-LSCILG 710



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 178/386 (46%), Gaps = 6/386 (1%)

Query: 88  PNPTLSTFNMLMSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           P+P + ++++LMS+         E A ++L  ++  G++ +   Y T +    ++ +V +
Sbjct: 207 PSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYGLCRAKQVKS 266

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            +     +   G   N + + A+I G    GQV KA   +  M+     PD   ++ L+ 
Sbjct: 267 AWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHSYSILVD 326

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G V   + +L EM    + + P+ ++  +L+     AG+V+ A E++K +     
Sbjct: 327 GLCKQGDVLTGYYMLVEMAR--NGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGF 384

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K    VY+I ++ C Q  D E    +++DM     +PD    S+LI       +++ A E
Sbjct: 385 KHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALE 444

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + +     GI   +++ + L+   SN     +A    + ++   + P + T   +I  LC
Sbjct: 445 VFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRVIINGLC 504

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             ++      + +DM   G  P+T+ YSI++    +  D++    L  +  ++G  PN+ 
Sbjct: 505 KVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIF 564

Query: 446 MFKCII-GMC-SRRYEKARTLNEHVL 469
            +  +I G+C   +  +  TL +H++
Sbjct: 565 TYTSLINGLCHDDKLPEVMTLFKHMI 590



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 143/309 (46%), Gaps = 5/309 (1%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVA--KAFGAYGIMRSKNVKPDRVVFNALITA 206
           +F +M  +G  PN+++Y  L+       ++   +A      M  + V+P+   +   +  
Sbjct: 198 LFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYG 257

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             ++  V  A++ L  +    +P +       A++    + GQV +A EV+  + K    
Sbjct: 258 LCRAKQVKSAWNFLQMLCQRGYPCNS--YCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFV 315

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+I ++   + GD      +  +M + G+ P+ V  S+L+     AG+VE AFE+
Sbjct: 316 PDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFEL 375

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            +  K+QG     I YS ++  C    + +   +L+  M      P     ++LI A C 
Sbjct: 376 FKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCR 435

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             QL + +EV   M   G+CPN +T +IL+     +  +    + L + ++ GV+PNL  
Sbjct: 436 HRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCT 495

Query: 447 FKCII-GMC 454
           ++ II G+C
Sbjct: 496 YRVIINGLC 504



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 306 FLSALIDFAGHAGKVEAAFEILQEA----KNQGISVGIIS-YSSLMGACSNAKNWQKALE 360
            + +++D  G+AG      E+ Q A     N G S+ +   Y++++        ++ AL 
Sbjct: 110 LIQSVVDHCGNAGP-----ELFQLAPMLASNLGGSMTLPQVYATVIRVFVELSMFEDALV 164

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
            Y   K + ++  V   N L+  L +G+Q+     +  DMK  G  PN  +YS+L+    
Sbjct: 165 TYVEAKKVGVELQVC--NFLLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYT 222

Query: 421 R--KDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMCSRRYEKA 461
              K  +E    LLS+ + +GV PN   +   + G+C  +  K+
Sbjct: 223 HGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYGLCRAKQVKS 266


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 203/453 (44%), Gaps = 20/453 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + + G     +++L  M+   +     +Y A    +CK    IK    F ++      
Sbjct: 53  NGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIF 112

Query: 90  PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+N M+   C+  K S+ A Q+LR + E  +  D   ++ LI    K GKV    E
Sbjct: 113 PNVLTYNCMIDGYCSYGKWSD-AEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEE 171

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ EM+   I P   TY ++IDG  K  ++  A   + +M SK   PD +  N LI  C 
Sbjct: 172 LYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCC 231

Query: 209 -----------QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
                      Q G V+ A D+  EM +  + V PD +T   L+      G++++A E++
Sbjct: 232 RAKRHLIHGFCQVGNVNVAQDLFQEMIS--NGVSPDIVTCNTLLAGLCENGKLEKALEMF 289

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           K+  K  +        I IN   +    + A  +++ +   GV  D V  + LI      
Sbjct: 290 KVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKE 349

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G    A +I  E   +GI    ++Y+S++         ++A ++ + M S    P V T 
Sbjct: 350 GNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTF 409

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           + LI   C   ++   +E+ S+M   GL  +TITY+ L+    +  D+     +  +   
Sbjct: 410 STLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVS 469

Query: 438 DGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
            GV P+ + F+ ++ G+C++   +K  T+ E +
Sbjct: 470 SGVCPDTITFRSMLAGLCTKAELQKGLTMLEDL 502



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 188/402 (46%), Gaps = 56/402 (13%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           E G  A+   +TTL+    + G+V     +   MV  G +P+  TYG +++G  K G   
Sbjct: 3   ETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTV 62

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP--------- 229
            A      M    +K + V+++A++    + G   +A ++  EM+ + + P         
Sbjct: 63  SALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMI 122

Query: 230 -----------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                                  +DPD +T  AL+ A    G+V  A E+Y+ + + NI 
Sbjct: 123 DGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIF 182

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--------- 317
            T   Y+  I+   +    E A  ++D M  KG  PD + L+ LID    A         
Sbjct: 183 PTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFC 242

Query: 318 --GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTV 374
             G V  A ++ QE  + G+S  I++ ++L+ G C N K  +KALE+++  +  K+    
Sbjct: 243 QVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGK-LEKALEMFKVFQKSKMDLDT 301

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV----EVGLM 430
           +T N +I  +C G+++ +  ++ + +   G+  + +TY+IL+    ++ +     ++ L 
Sbjct: 302 ATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLE 361

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLS 470
           +L +    G+IP+ V +  ++ G C + R E+AR + + ++S
Sbjct: 362 MLCK----GIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVS 399



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 145/338 (42%), Gaps = 29/338 (8%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV  G   NV T+  L++G  + G+V +A      M  +  +PD V +  ++    + G 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              A ++L +M+     +  + +   A++      G   +A+ ++  +H+  I      Y
Sbjct: 61  TVSALNMLRKMDES--QIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTY 118

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+     G W  A  +  DM ++ + PD V  SALI+     GKV  A E+ +E   
Sbjct: 119 NCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLR 178

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ-- 389
           + I    I+YSS++ G C +++  + A  +++ M S    P + T+N LI   C   +  
Sbjct: 179 RNIFPTTITYSSMIDGFCKHSR-LEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHL 237

Query: 390 ---------LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL-----SQA 435
                    +    ++  +M S G+ P+ +T + LL        +E  L +      S+ 
Sbjct: 238 IHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKM 297

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 473
             D    N++    I GMC     K   ++E    FNS
Sbjct: 298 DLDTATCNII----INGMC-----KGNKVDEAWDLFNS 326



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 90  PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P+  T+N M+   C  ++  E    V  +V E G   D   ++TLI    K+G+VD   E
Sbjct: 369 PSTVTYNSMVDGFCKQNRLEEARQMVDSMVSE-GCSPDVVTFSTLIKGYCKAGRVDDGLE 427

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM   G+  +  TY ALI G  K G +  A   +  M S  V PD + F +++    
Sbjct: 428 LFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLC 487

Query: 209 QSGAVDRAFDVLAEMNAEV-HPVDPDH 234
               + +   +L ++   V H ++ D 
Sbjct: 488 TKAELQKGLTMLEDLQKSVDHELEDDE 514


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 197/424 (46%), Gaps = 9/424 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           N L  +GR+SE ++L++ M   G    L+ ++ + +    N  K   A+    R  +   
Sbjct: 150 NGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLN-GKVSDAVLLIDRMVETGF 208

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+  ++ V   S  +  A ++LR ++E  +K D   Y+ +I    K G +D  F 
Sbjct: 209 QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFN 268

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F+EM   G + ++  Y  LI G   AG+          M  + + PD V F+ALI    
Sbjct: 269 LFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFV 328

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  A ++  EM      + PD +T  +L+       Q+D+A  +  ++        
Sbjct: 329 KEGKLREAEELHKEMIQ--RGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              + I IN   +    +    ++  M+ +GV+ D V  + LI      GK+E A E+ Q
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           E  ++ +   I+SY  L+ G C N +  +KALE++E ++  K++  +   N +I  +C+ 
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEP-EKALEIFEKIEKSKMELDIGIYNIIIHGMCNA 505

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++    ++   +   G+ P+  TY+I++    +K  +    +L  + +EDG  PN   +
Sbjct: 506 SKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTY 565

Query: 448 KCII 451
             +I
Sbjct: 566 NILI 569



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 192/452 (42%), Gaps = 21/452 (4%)

Query: 31  SYNRLIRQGRIS----ECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFR 82
           SY   +R G +     + +DL ++M R      L+D      +R F+V    K       
Sbjct: 39  SYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDF-----SRLFSVVARTKQYDLVLD 93

Query: 83  FFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             K +        L T +++++ C   +    AF  +  + + G + D   ++TLI    
Sbjct: 94  LCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLC 153

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
             G+V    E+   MV  G +P + T  AL++G    G+V+ A      M     +P+ V
Sbjct: 154 LEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEV 213

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +  ++    +SG    A ++L +M  E   +  D +    ++      G +D A  ++ 
Sbjct: 214 TYGPVLKVMCKSGQTALAMELLRKM--EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 271

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +     K    +YT  I      G W+    +  DM K+ + PD V  SALID     G
Sbjct: 272 EMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEG 331

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           K+  A E+ +E   +GIS   ++Y+SL+          KA  + + M S    P + T N
Sbjct: 332 KLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFN 391

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI   C  + +   +E+   M   G+  +T+TY+ L+        +EV   L  +    
Sbjct: 392 ILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR 451

Query: 439 GVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
            V P++V +K ++ G+C     EKA  + E +
Sbjct: 452 RVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 157/371 (42%), Gaps = 13/371 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L + G +    +L  +ME KG      +Y       C + +     K      K    P 
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPD 316

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +  F+ L+           A ++ + + + G+  D   YT+LI    K  ++D    +  
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            MV+ G  PN+ T+  LI+G  KA  +      +  M  + V  D V +N LI    + G
Sbjct: 377 LMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 436

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A ++  EM +    V PD ++   L+    + G+ ++A E+++ I K  ++    +
Sbjct: 437 KLEVAKELFQEMVS--RRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGI 494

Query: 272 YTIAIN--CCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           Y I I+  C +   D  W+  CS    +  KGV PD    + +I      G +  A  + 
Sbjct: 495 YNIIIHGMCNASKVDDAWDLFCS----LPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLF 550

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++ +  G S    +Y+ L+ A     +  K+ +L E +K        ST+  ++  L DG
Sbjct: 551 RKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDG 610

Query: 388 DQLPKTMEVLS 398
                 +++LS
Sbjct: 611 RLKKSFLDMLS 621


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 184/395 (46%), Gaps = 13/395 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAF 81
           +YN +I    + G +     L + M   GL      Y+     +C++ +     A+ +  
Sbjct: 233 TYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 292

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K+VP+    T+++L    + + DS+    +     + G+       + L+    K G
Sbjct: 293 ASQKMVPDGF--TYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDG 350

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KV    EV   +VNAG+ P    Y  LI+G  + G++  AF  +G M+S+++KPD + +N
Sbjct: 351 KVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYN 410

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           ALI    ++  +  A D+L EM  + + V+P   T   L+ A    GQ+++   V   + 
Sbjct: 411 ALINGLCKAERITNAQDLLMEM--QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 468

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +K     Y   +N   + G    A ++ DDM  K V+P+    +A+ID     G  +
Sbjct: 469 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 528

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            AF ++++ K+ GIS  I++Y+ L+    N     +A E+   + + +L P   + N LI
Sbjct: 529 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 588

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A C    + K +++   M   G+     TY  L+
Sbjct: 589 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 623



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 202/431 (46%), Gaps = 15/431 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAF 81
           SYN +I    R GR  + +++ ++M  + +L     Y+       K        ++++  
Sbjct: 198 SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQM 257

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               L PN    T+N+L+S +C + +  E +  +L  +    +  D   Y+ L    +++
Sbjct: 258 VCHGLKPNAI--TYNVLLSGLCRAGRMGETS-ALLDEMASQKMVPDGFTYSILFDGLSRN 314

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G   AM  +F + +  G+    +T   L++G  K G+V+ A      + +  + P RV++
Sbjct: 315 GDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 374

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N LI    Q+G ++ AF    +M +    + PDHIT  AL+     A ++  A+++   +
Sbjct: 375 NTLINGYCQTGELEGAFSTFGQMKSR--HIKPDHITYNALINGLCKAERITNAQDLLMEM 432

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +  T E +   I+   +TG  E    V  +M + G+ P+ V   ++++     GK+
Sbjct: 433 QDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKI 492

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A  IL +  ++ +      Y++++ A        +A  L E MKS  + P++ T N L
Sbjct: 493 PEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLL 552

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I  LC+  Q+ +  E+++ + +  L P+ ++Y+ L+ AC  + +++  L L  +  + G+
Sbjct: 553 IKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGI 612

Query: 441 IPNLVMFKCII 451
              +  +  +I
Sbjct: 613 KSTVRTYHQLI 623



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 174/370 (47%), Gaps = 3/370 (0%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P   ++N++++    +     A +V   + E  +  +   Y T+I    K G ++A F
Sbjct: 192 PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 251

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +  +MV  G++PN  TY  L+ G  +AG++ +       M S+ + PD   ++ L    
Sbjct: 252 SLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 311

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G       +  +  +  + V     T   L+      G+V  A EV + +    +  
Sbjct: 312 SRNGDSKAMLSLFGK--SLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVP 369

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T  +Y   IN   QTG+ E A S +  M  + + PD +  +ALI+    A ++  A ++L
Sbjct: 370 TRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLL 429

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E ++ G++  + ++++L+ A       +K   +   M+   LKP V +  +++ A C  
Sbjct: 430 MEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKN 489

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++P+ + +L DM    + PN   Y+ ++ A       +   +L+ + K +G+ P++V +
Sbjct: 490 GKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTY 549

Query: 448 KCII-GMCSR 456
             +I G+C++
Sbjct: 550 NLLIKGLCNQ 559



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 164/365 (44%), Gaps = 3/365 (0%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P+LS+ N+L+    S        +   ++  AG + D   +   +  C  +G +    
Sbjct: 121 PLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAV 180

Query: 148 EVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            +   M   G   PN  +Y  +I G  +AG+   A   +  M  + V P+ + +N +I  
Sbjct: 181 GMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDG 240

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G ++  F +  +M    H + P+ IT   L+     AG++     +   +    + 
Sbjct: 241 HIKGGDLEAGFSLRDQM--VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 298

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+I  +  S+ GD +   S++    K GV   +   S L++     GKV  A E+
Sbjct: 299 PDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 358

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           LQ   N G+    + Y++L+         + A   +  MKS  +KP   T NALI  LC 
Sbjct: 359 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 418

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
            +++    ++L +M+  G+ P   T++ L+ A  R   +E   ++LS+ +E+G+ PN+V 
Sbjct: 419 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 478

Query: 447 FKCII 451
           +  I+
Sbjct: 479 YGSIV 483



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 178/417 (42%), Gaps = 31/417 (7%)

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G+ A    A+GI+ S   +PD   +N  + AC  +G +  A  +L  M  +  P  P+  
Sbjct: 139 GRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAP-PPNAF 197

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           +   ++     AG+   A EV+  + +  +      Y   I+   + GD E   S+ D M
Sbjct: 198 SYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQM 257

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
              G+ P+ +  + L+     AG++     +L E  +Q +     +YS L    S   + 
Sbjct: 258 VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDS 317

Query: 356 QKALELYEHMKSIKLKPTVS--TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           +  L L+   KS+K   T+   T + L+  LC   ++    EVL  + + GL P  + Y+
Sbjct: 318 KAMLSLFG--KSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYN 375

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL------- 464
            L+    +  ++E       Q K   + P+ + +  +I G+C + R   A+ L       
Sbjct: 376 TLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDN 435

Query: 465 --NEHVLSFNS-----GRP-QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 516
             N  V +FN+     GR  Q+E  +  L+ M     +    +    +V+      ++P 
Sbjct: 436 GVNPTVETFNTLIDAYGRTGQLEKCFIVLSEM-QENGLKPNVVSYGSIVNAFCKNGKIPE 494

Query: 517 NADIRERLVENLGVSADALKRSNLC-SLIDGFGEYDP--RAFSLLEEAASFGIVPCV 570
              I + +        D L  + +  ++ID + E+ P  +AF L+E+  S GI P +
Sbjct: 495 AVAILDDMFHK-----DVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSI 546



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 7/196 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN-- 89
           N   + G+I E + +L+DM  K +L   +VY+A   +         +AF    K+  N  
Sbjct: 484 NAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNA-IIDAYVEHGPNDQAFILVEKMKSNGI 542

Query: 90  -PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P++ T+N+L+  +C  S+ SE A +++  +    L  D   Y TLI+ C   G +D   
Sbjct: 543 SPSIVTYNLLIKGLCNQSQISE-AEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKAL 601

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++   M   GI+  V TY  LI G   AG++ +    Y  M   NV P   + N ++ A 
Sbjct: 602 DLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAY 661

Query: 208 GQSGAVDRAFDVLAEM 223
            + G   +A D+  EM
Sbjct: 662 SKYGNEIKAEDLRKEM 677


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 202/438 (46%), Gaps = 17/438 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  ++S N LI    R   +   I +L  M + G+   D +      N    +  IKEA
Sbjct: 123 VTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGI-QPDAITFNTLINGRCIEGEIKEA 181

Query: 81  FRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F  +      P + +++ +++    S ++  A Q+LR ++E G K +   YTT+I +
Sbjct: 182 VGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDS 241

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K   V+   ++  EMV+ GI P+V TY  ++ G    G + +A   +  M  +NV P+
Sbjct: 242 LCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPN 301

Query: 197 RVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            V F  L+    + G V  A   F+ + +  AE     P+  T  ALM       Q+D A
Sbjct: 302 TVTFTILVDGLCKEGMVSEARCVFEAMTKKGAE-----PNAYTYNALMDGYCLNNQMDEA 356

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           ++V  ++           Y I IN   +    + A S+  +M++K + PD V  S L+  
Sbjct: 357 QKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQG 416

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G+ + A  + +E  + G+   +++YS+L+       +  +AL+L + M+  K++P 
Sbjct: 417 LCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPD 476

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           +   N LI  +    +L    E+ S + + G+ P   TY+I++    ++   +    L  
Sbjct: 477 IVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFR 536

Query: 434 QAKEDGVIPNLVMFKCII 451
           + ++DG +PN   +  II
Sbjct: 537 KMEDDGFLPNSCSYNVII 554



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 171/411 (41%), Gaps = 37/411 (9%)

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+   +R  ++ P P++  F   +   A  K       +   +   G+  +      LI 
Sbjct: 76  ALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILIN 135

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              +   V     V  +M   GI+P+  T+  LI+G    G++ +A G +  M  +  +P
Sbjct: 136 CLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQP 195

Query: 196 DRVVFNALITACGQSG-----------------------------------AVDRAFDVL 220
           D + ++ +I    +SG                                    V+ A D+L
Sbjct: 196 DVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLL 255

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
           +EM     P  PD +T   ++    + G ++ A  ++  +   N+      +TI ++   
Sbjct: 256 SEMVDRGIP--PDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLC 313

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           + G    A  V++ MTKKG  P+    +AL+D      +++ A ++L    ++G +  + 
Sbjct: 314 KEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVH 373

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           SY+ L+      +   +A  L   M   +L P   T + L+  LC   +  + + +  +M
Sbjct: 374 SYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEM 433

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            S GL P+ +TYS LL    +   ++  L LL   +E  + P++V++  +I
Sbjct: 434 CSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILI 484



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 127/283 (44%), Gaps = 7/283 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++G +SE   + E M +KG       Y+A     C + + + EA +   ++ +    P
Sbjct: 312 LCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQ-MDEAQKVLDIMVDKGCAP 370

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + ++N+L++     +  + A  +L  + E  L  D   Y+TL+    + G+      +F
Sbjct: 371 VVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLF 430

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM ++G+ P++ TY  L+DG  K G + +A      M+   ++PD V++N LI     +
Sbjct: 431 KEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIA 490

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G ++ A ++ +++ A+   + P   T   ++K     G  D A E+++ +          
Sbjct: 491 GKLEVAKELFSKLFAD--GIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSC 548

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            Y + I    Q  D   A  + D+M  K    D      L+D 
Sbjct: 549 SYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDL 591



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 1/224 (0%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P  +  G  + + A   Q      +   +  + +        I INC  +     FA SV
Sbjct: 90  PSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISV 149

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
              M K G+ PD +  + LI+     G+++ A  +  E   +G    +ISYS+++     
Sbjct: 150 LGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCK 209

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           + N   AL+L   M+    KP +     +I +LC    +   M++LS+M   G+ P+ +T
Sbjct: 210 SGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVT 269

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           YS +L        +    +L ++     V+PN V F  ++ G+C
Sbjct: 270 YSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLC 313



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 146/353 (41%), Gaps = 7/353 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           + L +   +++ +DLL +M  +G+      Y       C      +    F ++V     
Sbjct: 240 DSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVM 299

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P   TF +L+  +C     SE A  V   + + G + +   Y  L+     + ++D   +
Sbjct: 300 PNTVTFTILVDGLCKEGMVSE-ARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQK 358

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V   MV+ G  P VH+Y  LI+G  K  ++ +A      M  K + PD V ++ L+    
Sbjct: 359 VLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLC 418

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           Q G    A ++  EM +    + PD +T   L+      G +D A ++ K + +  I+  
Sbjct: 419 QVGRPQEALNLFKEMCSS--GLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPD 476

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             +Y I I      G  E A  ++  +   G+ P     + +I      G  + A+E+ +
Sbjct: 477 IVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFR 536

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           + ++ G      SY+ ++      ++   A+ L + M   +     ST   L+
Sbjct: 537 KMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLL 589



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 9/203 (4%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +HSYN LI    ++ R+ E   LL +M  K L      Y      +C+  +  +EA   F
Sbjct: 372 VHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRP-QEALNLF 430

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           K + +    P L T++ L+         + A ++L+ +QE+ ++ D  LY  LI     +
Sbjct: 431 KEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIA 490

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK++   E+F ++   GI+P + TY  +I G  K G   +A+  +  M      P+   +
Sbjct: 491 GKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSY 550

Query: 201 NALITACGQSGAVDRAFDVLAEM 223
           N +I    Q+     A  ++ EM
Sbjct: 551 NVIIQGFLQNQDSSTAIRLIDEM 573


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 188/425 (44%), Gaps = 6/425 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           N      RISE + L++ M   G     +    + H   F   K+ +A+    R      
Sbjct: 153 NGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHG-LFQHNKASEAVALVERMVVKGC 211

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+  +++      + + A  +L  +++  ++AD  +Y T+I    K   +D  F+
Sbjct: 212 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFD 271

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F++M   GI+P+V TY  LI      G+ + A      M  KN+ PD V FNALI A  
Sbjct: 272 LFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFV 331

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  A  +  EM    H   PD +    L+K      +V+   EV++ + +  + G 
Sbjct: 332 KEGKLVEAEKLYDEMVKSKHCF-PDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 390

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  I+   Q  D + A  V+  M   GV PD +  + L+D   + G VE A  + +
Sbjct: 391 TVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFE 450

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             + + + + I++Y++++ A   A   +   +L+  +    +KP V T   +++  C   
Sbjct: 451 YMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKG 510

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              +   +  +MK  G  PN+ TY+ L+ A  R  D      L+ + +  G   +   F 
Sbjct: 511 LKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFG 570

Query: 449 CIIGM 453
            +  M
Sbjct: 571 LVTNM 575



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 192/427 (44%), Gaps = 11/427 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF--RFFKLVPNPTLS 93
           +  +    I L E M+  G+      Y       C+ SQ ++  A   +  KL   P++ 
Sbjct: 87  KMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIV 146

Query: 94  TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           T N L++  C  ++ SE    V ++V E G + D   +TTL+    +  K      +   
Sbjct: 147 TLNSLLNGFCHGNRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQHNKASEAVALVER 205

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV  G +P++ TYGA+I+G  K G+   A      M    ++ D V++N +I    +   
Sbjct: 206 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKH 265

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEV 271
           +D AFD+  +M  E   + PD  T   L+    N G+  D +R +  M+ K NI      
Sbjct: 266 MDDAFDLFNKM--ETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEK-NINPDLVF 322

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           +   I+   + G    A  +YD+M K K   PD V  + LI       +VE   E+ +E 
Sbjct: 323 FNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREM 382

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +G+    ++Y++L+     A++   A  +++ M S  + P + T N L+  LC+   +
Sbjct: 383 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNV 442

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              + V   M+   +  + +TY+ ++ A  +   VE G  L       GV PN+V +  +
Sbjct: 443 ETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTM 502

Query: 451 I-GMCSR 456
           + G C +
Sbjct: 503 MSGFCRK 509



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 163/370 (44%), Gaps = 4/370 (1%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P++  F+ L+S  A     +    +   +Q  G+  +   Y+  I    +  ++    
Sbjct: 71  PFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLAL 130

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +  +M+  G  P++ T  +L++G     ++++A      M     +PD V F  L+   
Sbjct: 131 AILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGL 190

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            Q      A  ++  M   V    PD +T GA++      G+ D A  +   + K  I+ 
Sbjct: 191 FQHNKASEAVALVERM--VVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEA 248

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
              +Y   I+   +    + A  +++ M  KG+ PD    + LI    + G+   A  +L
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLL 308

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVSTMNALITALCD 386
            +   + I+  ++ +++L+ A        +A +LY+ M KS    P V   N LI   C 
Sbjct: 309 SDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCK 368

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             ++ + MEV  +M   GL  NT+TY+ L+    +  D +   M+  Q   DGV P+++ 
Sbjct: 369 YKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMT 428

Query: 447 FKCII-GMCS 455
           +  ++ G+C+
Sbjct: 429 YNILLDGLCN 438



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 161/372 (43%), Gaps = 10/372 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           N L ++G     ++LL  ME KG ++ D V Y+     +CK  K + +AF  F  +    
Sbjct: 223 NGLCKRGEPDLALNLLNKME-KGKIEADVVIYNTIIDGLCK-YKHMDDAFDLFNKMETKG 280

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + T+N L+S   +      A ++L  + E  +  D   +  LI    K GK+    
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340

Query: 148 EVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           +++ EMV +    P+V  Y  LI G  K  +V +    +  M  + +  + V +  LI  
Sbjct: 341 KLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHG 400

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             Q+   D A  V  +M ++   V PD +T   L+    N G V+ A  V++ + K ++K
Sbjct: 401 FFQARDCDNAQMVFKQMVSD--GVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMK 458

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                YT  I    + G  E    ++  ++ KGV P+ V  + ++      G  E A  +
Sbjct: 459 LDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADAL 518

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             E K  G      +Y++L+ A     +   + EL + M+S       ST   +   L D
Sbjct: 519 FVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNMLHD 578

Query: 387 GDQLPKTMEVLS 398
           G      +++LS
Sbjct: 579 GRLDKSFLDMLS 590



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 158/392 (40%), Gaps = 62/392 (15%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           ++ L++  AK  K D +  +  +M N GI  N++TY   I+   +  Q++ A    G M 
Sbjct: 78  FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMM 137

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACAN 246
                P  V  N+L+        +  A    D + EM  +     PD +T   L+     
Sbjct: 138 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQ-----PDTVTFTTLVHGLF- 191

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
             Q ++A E   ++ +                                M  KG  PD V 
Sbjct: 192 --QHNKASEAVALVER--------------------------------MVVKGCQPDLVT 217

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
             A+I+     G+ + A  +L + +   I   ++ Y++++      K+   A +L+  M+
Sbjct: 218 YGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKME 277

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD-V 425
           +  +KP V T N LI+ LC+  +      +LSDM    + P+ + ++ L+ A  ++   V
Sbjct: 278 TKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLV 337

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIEN--KW 482
           E   +     K     P++V +  +I G C  +Y++     E V    S R  + N   +
Sbjct: 338 EAEKLYDEMVKSKHCFPDVVAYNTLIKGFC--KYKRVEEGME-VFREMSQRGLVGNTVTY 394

Query: 483 TSL------------ALMVYREAIVAGTIPTV 502
           T+L            A MV+++ +  G  P +
Sbjct: 395 TTLIHGFFQARDCDNAQMVFKQMVSDGVHPDI 426



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 1/170 (0%)

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  ++ DM K    P  V  S L+       K +    + ++ +N GIS  + +YS  + 
Sbjct: 59  AIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFIN 118

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                     AL +   M  +   P++ T+N+L+   C G+++ + + ++  M  +G  P
Sbjct: 119 YFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP 178

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
           +T+T++ L+    + +     + L+ +    G  P+LV +  +I G+C R
Sbjct: 179 DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 228


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 175/396 (44%), Gaps = 42/396 (10%)

Query: 70  VCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +CK  K +K+A  F      L   P + T+N ++         + A  + + +++ GL+ 
Sbjct: 226 LCKEGK-LKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEP 284

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG-- 183
           DC  Y + I+   K G+++    +  +M+  G+ PN  TY ALIDG    G + KA+   
Sbjct: 285 DCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYR 344

Query: 184 ----AYGIM-----------------------------RSKNVKPDRVVFNALITACGQS 210
               + GIM                             R K + PD V  N LI    + 
Sbjct: 345 DEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRC 404

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G   RAF +L EM  +   + P  +T  +L+       ++  A  ++  I +  +     
Sbjct: 405 GDAKRAFGLLDEMVGK--GIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDII 462

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           V+   I+     G+ + A  +  +M    V+PDE+  + L+      GKVE A ++L E 
Sbjct: 463 VFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEM 522

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K +GI    ISY++L+   S   + + A  + + M +    PT+ T NALI  LC   + 
Sbjct: 523 KRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEG 582

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
               E+L +M S G+ P+  TY  ++ A E  DD+E
Sbjct: 583 EHAEELLKEMVSKGITPDDSTYLSIIEAMETVDDLE 618



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 189/393 (48%), Gaps = 5/393 (1%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           F  + ++Q A       F++    +L TFN++++V       + A + +  ++  G+K +
Sbjct: 191 FLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPN 250

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y T+I      GK      +F  M + G+EP+ +TY + I G  K G++ +A G   
Sbjct: 251 VVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLIC 310

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M    + P+ V +NALI      G +D+A+    EM ++   +    +T    + A   
Sbjct: 311 KMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISK--GIMASLVTYNLFIHALFM 368

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G++  A  + K + +  +      + I IN   + GD + A  + D+M  KG+ P  V 
Sbjct: 369 EGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVT 428

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM 365
            ++LI   G   +++ A  +  + + +G+   II +++L+ G C+N  N  +A +L + M
Sbjct: 429 YTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANG-NIDRAFQLLKEM 487

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
            ++K+ P   T N L+   C   ++ +  ++L +MK  G+ P+ I+Y+ L+    ++ D+
Sbjct: 488 DNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDM 547

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
           +    +  +    G  P ++ +  +I G+C  +
Sbjct: 548 KDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQ 580



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 179/387 (46%), Gaps = 6/387 (1%)

Query: 75  KAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           K   EA   F L+      P + T N ++S+      ++ A+ +   +    +++    +
Sbjct: 160 KKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTF 219

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             +I    K GK+    E    M   G++PNV TY  +I G    G+  +A   +  M+ 
Sbjct: 220 NIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKD 279

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           K ++PD   +N+ I+   + G ++ A  ++ +M  E   V P+ +T  AL+    N G +
Sbjct: 280 KGLEPDCYTYNSFISGLCKEGRLEEASGLICKM-LEGGLV-PNAVTYNALIDGYCNKGDL 337

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D+A      +    I  +   Y + I+     G    A ++  +M +KG++PD V  + L
Sbjct: 338 DKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNIL 397

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I+     G  + AF +L E   +GI   +++Y+SL+         ++A  L+  ++   L
Sbjct: 398 INGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGL 457

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P +   NALI   C    + +  ++L +M ++ + P+ ITY+ L+    R+  VE    
Sbjct: 458 LPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQ 517

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           LL + K  G+ P+ + +  +I   S+R
Sbjct: 518 LLDEMKRRGIKPDHISYNTLISGYSKR 544



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/393 (20%), Positives = 171/393 (43%), Gaps = 7/393 (1%)

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           H    ++  S  AI   +R     P P+++    L  + + +  +   F  L L ++   
Sbjct: 87  HPHSLDLATSSLAICVLYRLPS--PKPSINLIQRL--ILSPTCTNRTIFDELALARDRVD 142

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
                ++  L+    +  K +   E F+ +   G  PN+ T   ++    K  +   A+ 
Sbjct: 143 AKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWV 202

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            Y  M   N++     FN +I    + G + +A + +  M  E   V P+ +T   ++  
Sbjct: 203 LYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHM--ETLGVKPNVVTYNTIIHG 260

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
               G+  RAR +++ +    ++     Y   I+   + G  E A  +   M + G++P+
Sbjct: 261 HCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPN 320

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V  +ALID   + G ++ A+    E  ++GI   +++Y+  + A         A  + +
Sbjct: 321 AVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIK 380

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M+   + P   T N LI   C      +   +L +M   G+ P  +TY+ L+    +++
Sbjct: 381 EMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRN 440

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
            ++    L S+ +++G++P++++F  +I G C+
Sbjct: 441 RMKEADALFSKIQQEGLLPDIIVFNALIDGHCA 473



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 129/298 (43%), Gaps = 40/298 (13%)

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           + +KG +P+    + ++       + + A+ +  E     I   + +++ ++        
Sbjct: 172 IKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGK 231

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            +KA E   HM+++ +KP V T N +I   C   +  +   +   MK  GL P+  TY+ 
Sbjct: 232 LKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNS 291

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFN 472
            +    ++  +E    L+ +  E G++PN V +  +I G C++   +KA    + ++S  
Sbjct: 292 FISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMIS-- 349

Query: 473 SGRPQIENKWTSLALMVYREAIVA----GTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
                   K    +L+ Y   I A    G +   + + K           ++RE+     
Sbjct: 350 --------KGIMASLVTYNLFIHALFMEGRMGDADNMIK-----------EMREK----- 385

Query: 529 GVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVPC-VSFKEIPVVVDAR 582
           G+  DA+  +    LI+G+   G+   RAF LL+E    GI P  V++  +  V+  R
Sbjct: 386 GMMPDAVTHN---ILINGYCRCGDAK-RAFGLLDEMVGKGIQPTLVTYTSLIYVLGKR 439


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 204/430 (47%), Gaps = 11/430 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + G++      L +ME KG+   D V +    N    +  + EAF     +     
Sbjct: 232 NALCKDGKLDNVGVYLSEMEEKGVY-ADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGL 290

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+N L++        E A +VL  +   GL  +   +  ++    +   V     
Sbjct: 291 KPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAER 350

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF+EM+  G+ P++ ++ +++   ++ G++ +A   +  M+   + PD V++  LI    
Sbjct: 351 VFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYC 410

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++  V  A  +  EM  E   V  D +T   L+        +D A E++K + +  +   
Sbjct: 411 RNDDVSGALKMRNEM-VERGCV-MDVVTYNTLLNGLCRGKMLDDADELFKEMVERGV--F 466

Query: 269 PEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+ YT+   I+   + G+   A S+++ MT + + PD V  + L+D     G++E A E+
Sbjct: 467 PDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKEL 526

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             +  ++ I    IS+S L+    +     +A  L++ MK   +KPT+ T N +I     
Sbjct: 527 WYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLR 586

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L K  + L+ M S G+ P+ ITY+ L+ +  ++++ +    L++  +E G++PNLV 
Sbjct: 587 AGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVT 646

Query: 447 FKCIIGMCSR 456
           +  I+G  SR
Sbjct: 647 YNAILGGFSR 656



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 193/436 (44%), Gaps = 13/436 (2%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-----QK 75
           V   L +YN L+    R+G +SE   L++ M  KGL      Y+A    +CK       K
Sbjct: 255 VYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAK 314

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            + +      L PN   +TFN ++      +D   A +V   + + G+  D   +++++ 
Sbjct: 315 RVLDEMLGVGLCPNA--ATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVG 372

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
             +++G++      F +M   G+ P+   Y  LI+G  +   V+ A      M  +    
Sbjct: 373 VFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVM 432

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D V +N L+    +   +D A ++  EM      V PD  T+  L+      G + +A  
Sbjct: 433 DVVTYNTLLNGLCRGKMLDDADELFKEMVE--RGVFPDFYTLTTLIHGYCKDGNMTKALS 490

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +++ +   ++K     Y   ++   + G+ E A  ++ DM  + + P  +  S LI+   
Sbjct: 491 LFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFC 550

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G V  AF +  E K +GI   +++ ++++     A N  KA +    M S  + P   
Sbjct: 551 SLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCI 610

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N LI +    +   +   ++++M+  GL PN +TY+ +L    R   ++   M+L + 
Sbjct: 611 TYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKM 670

Query: 436 KEDGVIPNLVMFKCII 451
            + G+ P+   +  +I
Sbjct: 671 IDKGINPDKSTYTSLI 686



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 191/424 (45%), Gaps = 13/424 (3%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN LI    ++G       +L++M   GL      ++      C+ +  + EA R F
Sbjct: 294 LFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKED-VWEAERVF 352

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +      P L +F+ ++ V + + +   A      ++  GL  D  +YT LI    ++
Sbjct: 353 NEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRN 412

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
             V    ++ +EMV  G   +V TY  L++G  +   +  A   +  M  + V PD    
Sbjct: 413 DDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTL 472

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV-YKM 259
             LI    + G + +A  +   M   +  + PD +T   LM      G++++A+E+ Y M
Sbjct: 473 TTLIHGYCKDGNMTKALSLFETMT--LRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDM 530

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           I +  I  +   ++I IN     G    A  ++D+M +KG+ P  V  + +I     AG 
Sbjct: 531 ISR-EIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGN 589

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +  A + L    ++G+    I+Y++L+ +    +N+ +A  L  +M+   L P + T NA
Sbjct: 590 LSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNA 649

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           ++       ++ +   VL  M   G+ P+  TY+ L+     KD+++    +  +  + G
Sbjct: 650 ILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRG 709

Query: 440 VIPN 443
            +P+
Sbjct: 710 FVPD 713



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 14/237 (5%)

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS-------QTGDWEF 287
           +    L++    A ++    E ++++ K   +G    + ++IN C+       + G  + 
Sbjct: 155 VVFDLLIRTYVQARKLREGSEAFQLLRK---RG----FCVSINACNALLGAIVKVGWVDL 207

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  VY+D  K G I +   L+ +++     GK++     L E + +G+   +++Y++L+ 
Sbjct: 208 AWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVN 267

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           A        +A  L + M    LKP + T NALI  LC      +   VL +M  +GLCP
Sbjct: 268 AYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCP 327

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
           N  T++ +LV   RK+DV     + ++  + GV+P+L+ F  I+G+ SR  E  R L
Sbjct: 328 NAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRAL 384



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 122/279 (43%), Gaps = 9/279 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L R   + +  +L ++M  +G+              CK     K A   F+ +     
Sbjct: 442 NGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTK-ALSLFETMTLRSL 500

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N LM       + E A ++   +    +      ++ LI      G V   F 
Sbjct: 501 KPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFR 560

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ EM   GI+P + T   +I G  +AG ++KA      M S+ V PD + +N LI +  
Sbjct: 561 LWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFV 620

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV-YKMIHKYNIKG 267
           +    DRAF ++  M  E   + P+ +T  A++   +  G++  A  V +KMI K  I  
Sbjct: 621 KEENFDRAFFLINNM--EERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDK-GINP 677

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
               YT  IN      + + A  V+D+M ++G +PD+ F
Sbjct: 678 DKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPDDKF 716



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 156/388 (40%), Gaps = 60/388 (15%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-------------------ADCK 128
           PNP++    ++  +  S K  E    +LR+++++G+                     +  
Sbjct: 97  PNPSIIA-TLIHFLVQSKKLPEAQSLLLRIIRKSGVSHVEVIDSLISTSSSNLNSNQNVV 155

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GI 187
           ++  LI T  ++ K+    E F  +   G   +++   AL+    K G V  A+  Y   
Sbjct: 156 VFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDF 215

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           ++S N+  +    N ++ A  + G +D     L+EM  E   V  D +T   L+ A    
Sbjct: 216 VKSGNI-VNVYTLNIMVNALCKDGKLDNVGVYLSEM--EEKGVYADLVTYNTLVNAYCRR 272

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G V  A  +   +    +K     Y   IN   + G +E A  V D+M   G+ P+    
Sbjct: 273 GLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATF 332

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + ++  +     V  A  +  E   +G+   +IS+SS++G  S      +AL  +E M  
Sbjct: 333 NPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKM-- 390

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
                                            K +GL P+T+ Y+IL+    R DDV  
Sbjct: 391 ---------------------------------KGVGLVPDTVIYTILINGYCRNDDVSG 417

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            L + ++  E G + ++V +  ++ G+C
Sbjct: 418 ALKMRNEMVERGCVMDVVTYNTLLNGLC 445


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 137/596 (22%), Positives = 240/596 (40%), Gaps = 76/596 (12%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           H   A  V   + SY RL    R  + +DL+ +      +  D   +    NV      +
Sbjct: 120 HEAGAGVVRSFVESYARL---RRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRM 176

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           K     +  + +    P + T N L+     +     A  +L  +    +  D   +TTL
Sbjct: 177 KLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTL 236

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    + G ++A   V  +M+  G  P   T   LI+G  K G+V  A G      +   
Sbjct: 237 MQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGF 296

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           +PD+V +N  +    Q+G V  A  V+  M  E H  DPD  T   ++   +  G++D A
Sbjct: 297 EPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGH--DPDVFTYNTVINCLSKNGELDEA 354

Query: 254 R--------------------------------EVYKMIHKYNIKG-TPEVYT--IAINC 278
           +                                E   +  +  +KG +P+VYT  I IN 
Sbjct: 355 KGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINA 414

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             + GD      ++++M   G  PDEV  + LID     GK+  A ++L+E ++ G    
Sbjct: 415 LCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRS 474

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
            ++Y++++ A       ++A E+++ M +  +  +  T N LI  LC   ++    E++ 
Sbjct: 475 TVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIE 534

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
            M   GL P+ ITY+ +L    ++ D++    +L     +G   ++V +  +I G+C   
Sbjct: 535 QMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCK-- 592

Query: 458 YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517
                          +GR Q+       AL + R   + G  PT +  + V+  L    N
Sbjct: 593 ---------------AGRTQV-------ALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNN 630

Query: 518 ADIRE-----RLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
             +R+     R +  +G   DAL    +   +   G     AF  L E  + G +P
Sbjct: 631 --LRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMP 684



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/423 (19%), Positives = 182/423 (43%), Gaps = 8/423 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P 88
           N   + GR+ + +  ++     G  + D+V +  F +       +  A +   L+     
Sbjct: 273 NGYCKMGRVEDALGYIQKEIADGF-EPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGH 331

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+N +++  + + + + A  ++  + + G   D   + TLI       +++   +
Sbjct: 332 DPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALD 391

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  E+   G+ P+V+T+  LI+   K G        +  M+S    PD V +N LI    
Sbjct: 392 LARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLC 451

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G +  A D+L EM +   P     +T   ++ A     +++ A EV+  +  + I  +
Sbjct: 452 SMGKLVNALDLLKEMESNGCP--RSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRS 509

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +   I+   +    + A  + + M K+G+ P  +  ++++      G ++ A +IL+
Sbjct: 510 AVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILE 569

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
                G  + +++Y +L+     A   Q AL+L   M+   ++PT    N +I +L   +
Sbjct: 570 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRN 629

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            L   + +  +M  +G  P+ +TY I+    C     ++     L +    G +P    F
Sbjct: 630 NLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSF 689

Query: 448 KCI 450
           + +
Sbjct: 690 RML 692



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 155/354 (43%), Gaps = 8/354 (2%)

Query: 108 SEGAFQVL----RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GIEPNV 162
           + GAF ++    R ++  G +A   +  + + + A+  + D   ++    +N  G++ + 
Sbjct: 101 TAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADT 160

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
             Y  L++  A+  ++      Y  M  + ++PD V  N LI A  ++  V  A  +L E
Sbjct: 161 AVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEE 220

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M++  H V PD  T   LM+     G ++ A  V   + +     T     + IN   + 
Sbjct: 221 MSS--HAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKM 278

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G  E A          G  PD+V  +  +      G V  A +++     +G    + +Y
Sbjct: 279 GRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTY 338

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           ++++   S      +A  +   M      P  +T N LI ALC  ++L + +++  ++  
Sbjct: 339 NTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTV 398

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCS 455
            GL P+  T++IL+ A  +  D  +G+ L  + K  G  P+ V +  +I  +CS
Sbjct: 399 KGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCS 452



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 120/270 (44%), Gaps = 3/270 (1%)

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           ++  P R V+  +I   G +GA D    ++ EM  E H        + + +++ A   + 
Sbjct: 83  EDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAG--VVRSFVESYARLRRF 140

Query: 251 DRARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           D A + V   ++ + ++    VY   +N  ++    +   SVY++MT +G+ PD V L+ 
Sbjct: 141 DDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNT 200

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     A +V  A  +L+E  +  ++    ++++LM       + + AL +   M    
Sbjct: 201 LIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETG 260

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             PT  T+N LI   C   ++   +  +    + G  P+ +TY+  +    +   V   L
Sbjct: 261 CSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHAL 320

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
            ++    ++G  P++  +  +I   S+  E
Sbjct: 321 KVMDLMLQEGHDPDVFTYNTVINCLSKNGE 350



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 14/157 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIK--EA 80
           +YN ++    +QG + +  D+LE M   G  ++D V +    N +CK   +Q A+K    
Sbjct: 547 TYNSILTHYCKQGDLKKAADILETMTANGF-EIDVVTYGTLINGLCKAGRTQVALKLLRG 605

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAK 139
            R   + P P    +N ++       +   A  + R + E G   D   Y  +    C  
Sbjct: 606 MRIKGIRPTP--KAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRG 663

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
            G +   F+   EMVN G  P   ++  L +G    G
Sbjct: 664 GGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 700


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 204/461 (44%), Gaps = 25/461 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN-- 89
           N L R+ R+ E   +LE   R G  + D V +  F + +CK+++ + +AF+  K +    
Sbjct: 49  NGLCREKRLDEAFSVLERAVRAGC-EPDYVTYNVFIDGLCKAER-VDDAFQLLKKMDEKK 106

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             PT  T+  L+     +   + A  +L  + E G     K YT +I   +K+G+V+   
Sbjct: 107 CLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEAR 166

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR----SKNVKPDRVVFNAL 203
            +F +M+  G  P+   Y ALI G AK G++ +A      M     ++ V+PD V+ N +
Sbjct: 167 RIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLV 226

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I     SG ++ A     E++     +D  H T   L+ A   A + + A    K + + 
Sbjct: 227 IRQLCASGNLEDALAYFDELD---DSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSER 283

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
               T   YT  ++   + G  + A     +  ++G IPD V  +++ID     G+VE  
Sbjct: 284 RCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEG 343

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E   E +N+G     ++Y++L+     AK   KA  +Y  M       +  T N ++  
Sbjct: 344 CERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDG 403

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++ +       M+  G     +TYS L+     + +V   + L  +  + G  PN
Sbjct: 404 LCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPN 463

Query: 444 LVMFKCII-GMCSR--------RYEK--ARTLNEHVLSFNS 473
           LV +  II G+C           +EK   R L   V +FNS
Sbjct: 464 LVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNS 504



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 117/514 (22%), Positives = 208/514 (40%), Gaps = 29/514 (5%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  L +Y  +I    + GR+ E   +  DM   G      VY A    + K  K  +   
Sbjct: 143 SPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALV 202

Query: 82  RFFKLVPN-------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
              ++V N       P +   N+++    +S + E A      + ++ L      +  L+
Sbjct: 203 YLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDS-LDLTHFTFNPLV 261

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K+ + +       +M      P + TY +L+DG  K G++ +A         +   
Sbjct: 262 AALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFI 321

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V + ++I    + G V+   +   EM    +  +PD +T  AL+     A  + +A 
Sbjct: 322 PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGY--EPDAVTYAALIDGFMKAKMIPKAH 379

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            VY+ + +     +   Y I ++   + G    A + +  M ++G +   V  SAL+D  
Sbjct: 380 RVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGF 439

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G V AA E+ +   ++G    ++SY+ ++     A    KA   +E +   +L P V
Sbjct: 440 CSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDV 499

Query: 375 STMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
            T N+ +  LC   D +   +E+   M S G  PN  +YSIL+    R   +EV L +  
Sbjct: 500 YTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFH 559

Query: 434 QAKEDGVIPNLVMFK------CIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 487
           +    GV P++V+F       CI G      E  R L           P   + W+ L  
Sbjct: 560 EMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERR------SAPDAWSYWSLLDA 613

Query: 488 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 521
           +   E +    + +  +  K+ GC    Y+  +R
Sbjct: 614 LSRCERMEEARLLSFHM--KLQGCAPRHYDLTVR 645



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/435 (21%), Positives = 175/435 (40%), Gaps = 43/435 (9%)

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           +V  A    +CK+ +  +      ++  +P +  F ++++     K  + AF VL     
Sbjct: 10  RVCTALLNGLCKTGQLDRAMLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVR 69

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           AG + D   Y   I    K+ +VD  F++  +M      P   TY AL+DG  KAG++ +
Sbjct: 70  AGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDE 129

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A      M  K   P    +  +I    ++G V+ A  +  +M    +   PD     AL
Sbjct: 130 AMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLG--NGCRPDAFVYTAL 187

Query: 241 MKACANAGQVDRAREVY--KMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDD- 294
           +   A  G++D A  VY  +M+     +G  P+V  + + I     +G+ E A + +D+ 
Sbjct: 188 ISGLAKIGKLDEAL-VYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDEL 246

Query: 295 ---------------------------------MTKKGVIPDEVFLSALIDFAGHAGKVE 321
                                            M+++   P     ++L+D     G+++
Sbjct: 247 DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLD 306

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A   L+EA  +G     ++Y+S++         ++  E +  M++   +P   T  ALI
Sbjct: 307 EALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 366

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
                   +PK   V   M   G   +T+TY+I+L    +   V          +E G +
Sbjct: 367 DGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV 426

Query: 442 PNLVMFKCII-GMCS 455
             +V +  ++ G CS
Sbjct: 427 ATVVTYSALMDGFCS 441



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 6/171 (3%)

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           +AL++     G+++ A  +L E      S  +++++ ++      K   +A  + E    
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSVLERAVR 69

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
              +P   T N  I  LC  +++    ++L  M      P T+TY+ L+    +   ++ 
Sbjct: 70  AGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDE 129

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRP 476
            + +L Q  E G  P L  +  +I   S+  R E+AR +   +L  N  RP
Sbjct: 130 AMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLG-NGCRP 179


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 203/424 (47%), Gaps = 8/424 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
            R  E  +    M+ KG+L   +  ++    F  + +++ A       F+L    ++ TF
Sbjct: 165 NRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTF 224

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N++++V       + A   +  ++ +G+K +   Y T++     SG+V+A   +   M  
Sbjct: 225 NIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKR 284

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
             IEP+  TYG+LI G  K G++ +A   +  M  K ++P  V++N LI      G +D 
Sbjct: 285 QKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDM 344

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A     EM  +   + P   T  +L+ A     + D A  + K I +  I      Y I 
Sbjct: 345 ASAYKDEMLKK--GISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           IN   +  + + A  ++D+M   G+ P +   ++L+       +++ A ++ ++  ++G+
Sbjct: 403 INGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462

Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
              +I +++L+ G CSN+ N + A EL + M  +K+ P   T N ++   C   ++ +  
Sbjct: 463 LPDVIMFNALIDGHCSNS-NVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAR 521

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           E+  +MK  G+ P+ I+++ L+    R+ D++    + ++  + G  P ++ +  ++ G+
Sbjct: 522 ELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581

Query: 454 CSRR 457
           C  +
Sbjct: 582 CKNQ 585



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 221/474 (46%), Gaps = 24/474 (5%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F+ L+  C     ++ AF+    ++E G+    +   +L++   K  + +A + ++ EM 
Sbjct: 154 FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMF 213

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
              I+ +V+T+  +I+   K G++ KA    G M +  VKP+ V +N ++     SG V+
Sbjct: 214 RLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVE 273

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A  +L  M  +   ++PD  T G+L+      G+++ A ++++ + +  ++ +  +Y  
Sbjct: 274 AADAILTTMKRQ--KIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNT 331

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+     G+ + A +  D+M KKG+ P     ++LI       + + A  +++E + +G
Sbjct: 332 LIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKG 391

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           IS   I+Y+ L+       N +KA  L++ M +  +KPT  T  +L+  L   +++ +  
Sbjct: 392 ISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEAD 451

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           ++   + S G+ P+ I ++ L+       +V+    LL       V P+ V F  I+ G 
Sbjct: 452 DLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGH 511

Query: 454 CSR-RYEKARTLNEHV---------LSFN------SGRPQIENKWTSLALMVYREAIVAG 497
           C   + E+AR L + +         +SFN      S R  I++     A  V  E +  G
Sbjct: 512 CREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKD-----AFRVRNEMLDTG 566

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 551
             PTV   + ++  L      D+ E L++ +         +   +LI+G  + +
Sbjct: 567 FNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVN 620



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 165/362 (45%), Gaps = 46/362 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKAIKEAFR--F 83
           +Y  LI    +QGR+ E   + E+M +KGL     +Y+      C K    +  A++   
Sbjct: 293 TYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEM 352

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K   +PT+ST+N L+      + ++ A  +++ +QE G+  D   Y  LI    +    
Sbjct: 353 LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANA 412

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
              F +  EM+ +GI+P   TY +L+   +K  ++ +A   +  + S+ V PD ++FNAL
Sbjct: 413 KKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNAL 472

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I     +  V  AF++L +M+    P  PD +T   +M+     G+V+ ARE        
Sbjct: 473 IDGHCSNSNVKGAFELLKDMDRMKVP--PDEVTFNTIMQGHCREGKVEEARE-------- 522

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                                      ++D+M ++G+ PD +  + LI      G ++ A
Sbjct: 523 ---------------------------LFDEMKRRGIKPDHISFNTLISGYSRRGDIKDA 555

Query: 324 FEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           F +  E  + G +  +++Y++L+ G C N +    A EL + M S  + P  +T   LI 
Sbjct: 556 FRVRNEMLDTGFNPTVLTYNALVQGLCKN-QEGDLAEELLKEMVSKGMTPDDTTYFTLIE 614

Query: 383 AL 384
            +
Sbjct: 615 GI 616



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           +VF+ LI +C      D AF+    M  +   V P   T  +L+       + + A  +Y
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEK--GVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             + +  IK +   + I IN   + G  + A      M   GV P+ V  + ++     +
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+VEAA  IL   K Q I     +Y SL+         ++A +++E M    L+P+    
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC---ERKDDVEVGLMLLSQ 434
           N LI   C+   L        +M   G+ P   TY+ L+ A    +R D+ E    ++ +
Sbjct: 330 NTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAEC---MIKE 386

Query: 435 AKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
            +E G+ P+ + +  +I G C     +KA  L++ +L+  SG    +  +TSL
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLA--SGIKPTKKTYTSL 437



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 123/308 (39%), Gaps = 57/308 (18%)

Query: 314 AGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
            G    +   FE L  ++++ G    I+ +  L+ +C +     +A E +  MK   + P
Sbjct: 126 GGTTNSIREIFEFLAASRDRLGFKSSIV-FDYLIKSCCDMNRADEAFECFYTMKEKGVLP 184

Query: 373 TVSTMNAL-----------------------------------ITALCDGDQLPKTMEVL 397
           T+ T N+L                                   I  LC   +L K  + +
Sbjct: 185 TIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFV 244

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
             M++ G+ PN +TY+ ++        VE    +L+  K   + P+   +  +I GMC +
Sbjct: 245 GHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQ 304

Query: 457 -RYEKARTLNEHVLS---------FNSGRPQIENKWTSLALMVYR-EAIVAGTIPTVEVV 505
            R E+A  + E ++          +N+      NK        Y+ E +  G  PT+   
Sbjct: 305 GRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTY 364

Query: 506 SKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGE--YDPRAFSLLEE 560
           + ++  L +    D  E +++ +   G+S DA+  +    LI+G+       +AF L +E
Sbjct: 365 NSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYN---ILINGYCRCANAKKAFLLHDE 421

Query: 561 AASFGIVP 568
             + GI P
Sbjct: 422 MLASGIKP 429



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMS 100
            +LL+DM+R  +   +  ++      C+  K ++EA   F  +      P   +FN L+S
Sbjct: 486 FELLKDMDRMKVPPDEVTFNTIMQGHCREGK-VEEARELFDEMKRRGIKPDHISFNTLIS 544

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
             +   D + AF+V   + + G       Y  L+    K+ + D   E+  EMV+ G+ P
Sbjct: 545 GYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTP 604

Query: 161 NVHTYGALIDGCAK 174
           +  TY  LI+G AK
Sbjct: 605 DDTTYFTLIEGIAK 618


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 185/401 (46%), Gaps = 13/401 (3%)

Query: 29  LHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFF-NVCKSQKAIKEAFRF 83
           ++S N LI+     G + E + +   M+  G+     ++   F  N   + K I+ A R 
Sbjct: 179 VYSSNSLIKSFGNLGMVEEVLWVWRRMKENGI--EPSLFSYNFLVNGLVNSKFIESAERV 236

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F+++ N    P + T+N ++        +  AF+ L+ ++   +  D   Y TLI  C  
Sbjct: 237 FEVMENGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYA 296

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G  D+   ++HEM   G+E   H Y  +I G  K G+  + +  +  M SK  K +  +
Sbjct: 297 EGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAI 356

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           + ALI +  + G +  A  +   M  E   ++PD +T G ++ +   +G++D A E  + 
Sbjct: 357 YTALIDSNAKCGNMGEAMLLFKRMKKE--GLEPDEVTYGVIVNSLCKSGRLDEALEYMEF 414

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
                +      Y+  I+   ++G  + A  ++ +M KKG  PD    +ALID     GK
Sbjct: 415 CSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGK 474

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A  + +  +  G    + +Y+ L+         ++AL L++ M    + PT +   A
Sbjct: 475 IDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRA 534

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           L T LC   ++ +  ++L +M  +G+ P T    ++ + C+
Sbjct: 535 LSTGLCLSGKVARACKILDEMAPMGVIPETAFDDMINILCK 575



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 172/388 (44%), Gaps = 9/388 (2%)

Query: 70  VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           V  S K++   F+   L+   T+ + N L+    +    E    V R ++E G++     
Sbjct: 159 VLDSVKSVFSKFKEMGLIM--TVYSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFS 216

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  L+     S  +++   VF  M N  I P+V TY  +I G  + G+  KAF     M 
Sbjct: 217 YNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAME 276

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANA 247
            +NV PD++ +  LI AC   G  D    +  EM+ +   + P    + IG L   C + 
Sbjct: 277 LRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGL---CKDG 333

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
            +V+       MI K   K    +YT  I+  ++ G+   A  ++  M K+G+ PDEV  
Sbjct: 334 KRVEGYTVFENMISK-GCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTY 392

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
             +++    +G+++ A E ++    +G++V  + YSSL+     +    +A  ++  M  
Sbjct: 393 GVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVK 452

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
               P     NALI AL    ++ + + +   M+  G      TY+IL+    R+   E 
Sbjct: 453 KGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEE 512

Query: 428 GLMLLSQAKEDGVIPNLVMFKCI-IGMC 454
            L L     + G+ P    F+ +  G+C
Sbjct: 513 ALTLWDLMIDKGITPTAAAFRALSTGLC 540



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 4/204 (1%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           E Y   I+  +  G  +   SV+    + G+I      ++LI   G+ G VE    + + 
Sbjct: 145 ECYVSLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRR 204

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  GI   + SY+ L+    N+K  + A  ++E M++ K+ P V T N +I   C+  +
Sbjct: 205 MKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGK 264

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV-IPNLVMFK 448
             K  E L  M+   + P+ ITY  L+ AC  + D +  L L  +  E G+ IP  V   
Sbjct: 265 TRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSL 324

Query: 449 CIIGMC--SRRYEKARTLNEHVLS 470
            I G+C   +R E   T+ E+++S
Sbjct: 325 VIGGLCKDGKRVE-GYTVFENMIS 347


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 182/377 (48%), Gaps = 18/377 (4%)

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M++ G+ PNV+TY  L+      G   +A      MR     P+ V +N L+ A  +
Sbjct: 178 FDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFR 237

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G VD A  ++  M      + P+ +T  +++     AG+++ AR+V+  + +  +    
Sbjct: 238 AGEVDGAERLVGMMREG--GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDG 295

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +    + G    A SV+ +MT+KG++PD V  ++LI     AG +E A  ++++
Sbjct: 296 VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQ 355

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            + +G+ +  +++++L+           AL     MK  ++KP+V   NALI   C   +
Sbjct: 356 MRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGR 415

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  E+L +M++ GL P+ +TYS ++ A  +  D      L  Q  E GV+P+ + +  
Sbjct: 416 MDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSS 475

Query: 450 IIG-MCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIV 495
           +I  +C  +R   A  L ++++    G    E  +TSL            AL ++ + + 
Sbjct: 476 LIRVLCGEKRLSDAHVLFKNMIKL--GLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVK 533

Query: 496 AGTIPTVEVVSKVLGCL 512
           AG +P V   S ++  L
Sbjct: 534 AGVLPDVVTYSVLINGL 550



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 190/436 (43%), Gaps = 38/436 (8%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  +++YN L+R    +G   E + +L DM   G                         
Sbjct: 186 VAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGC------------------------ 221

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P + T+N L++    + + +GA +++ +++E GLK +   + +++    K+
Sbjct: 222 --------GPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKA 273

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK++   +VF EMV  G+ P+  +Y  L+ G  KAG   +A   +  M  K + PD V F
Sbjct: 274 GKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTF 333

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
            +LI    ++G ++RA  ++ +M      +  + +T  AL+      G +D A    + +
Sbjct: 334 TSLIHVMCKAGNLERAVTLVRQMRER--GLQMNEVTFTALIDGFCKKGFLDDALLAVRGM 391

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            +  IK +   Y   IN     G  + A  +  +M  KG+ PD V  S +I         
Sbjct: 392 KQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDT 451

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            +AFE+ Q+   +G+    I+YSSL+      K    A  L+++M  + L+P   T  +L
Sbjct: 452 HSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSL 511

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I   C    +   + +   M   G+ P+ +TYS+L+    +         LL +   +  
Sbjct: 512 IDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDP 571

Query: 441 IPNLVMFKCIIGMCSR 456
           IP    +  ++  C +
Sbjct: 572 IPANTKYDALMHCCRK 587



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 148/363 (40%), Gaps = 57/363 (15%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI      GR+ E  +LL +ME KGL                               
Sbjct: 403 YNALINGYCMVGRMDEARELLHEMEAKGL------------------------------- 431

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + T++ ++S    + D+  AF++ + + E G+  D   Y++LI       ++    
Sbjct: 432 -KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAH 490

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F  M+  G++P+  TY +LIDG  K G V  A   +  M    V PD V ++ LI   
Sbjct: 491 VLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGL 550

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---------------GQVDR 252
            +S     A  +L ++  E  P+ P +    ALM  C  A               G ++ 
Sbjct: 551 SKSARAMEAQQLLFKLYHE-DPI-PANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNE 608

Query: 253 AREVYKMI--HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           A +VY+ +    +N+ G+  VY++ I+   + G+   A S +  M + G  P+     +L
Sbjct: 609 ADKVYQSMLDRNWNLDGS--VYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISL 666

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I      G V  A +++Q+  N        +  +L+    N  N    L++   M    L
Sbjct: 667 IRGLFENGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGL 726

Query: 371 KPT 373
            P+
Sbjct: 727 LPS 729


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 221/474 (46%), Gaps = 24/474 (5%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F+ L+  C     ++ AF+    ++E G+    +   +L++   K  + +A + ++ EM 
Sbjct: 154 FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMF 213

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
              I+ +V+T+  +I+   K G++ KA    G M +  VKP+ V +N ++     SG V+
Sbjct: 214 RLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVE 273

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A  +L  M  +   ++PD  T G+L+      G+++ A ++++ + +  ++ +  +Y  
Sbjct: 274 AADAILTTMKRQ--KIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNT 331

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+     G+ + A +  D+M KKG+ P     ++LI       + + A  +++E + +G
Sbjct: 332 LIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKG 391

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           IS   I+Y+ L+       N +KA  L++ M +  +KPT  T  +L+  L   +++ +  
Sbjct: 392 ISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEAD 451

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           ++   + S G+ P+ I ++ L+       +V+    LL       V P+ V F  I+ G 
Sbjct: 452 DLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGH 511

Query: 454 CSR-RYEKARTLNEHV---------LSFN------SGRPQIENKWTSLALMVYREAIVAG 497
           C   + E+AR L + +         +SFN      S R  I++     A  V  E +  G
Sbjct: 512 CREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKD-----AFRVRNEMLDTG 566

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 551
             PTV   + ++  L      D+ E L++ +         +   +LI+G  + +
Sbjct: 567 FNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVN 620



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 202/424 (47%), Gaps = 8/424 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
            R  E  +    M+ KG+L   +  ++    F  + +++ A       F+L    ++ TF
Sbjct: 165 NRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTF 224

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N++++V       + A   +  ++ +G+K +   Y T++     SG+V+A   +   M  
Sbjct: 225 NIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKR 284

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
             IEP+  TYG+LI G  K G++ +A   +  M  K ++P  V++N LI      G +D 
Sbjct: 285 QKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDM 344

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A     EM  +   + P   T  +L+ A     + D A  + K I +  I      Y I 
Sbjct: 345 ASAYKDEMLKK--GISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           IN   +  + + A  ++D+M   G+ P +   ++L+       +++ A ++ ++  ++G+
Sbjct: 403 INGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGV 462

Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
               I +++L+ G CSN+ N + A EL + M  +K+ P   T N ++   C   ++ +  
Sbjct: 463 LPDAIMFNALIDGHCSNS-NVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEAR 521

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           E+  +MK  G+ P+ I+++ L+    R+ D++    + ++  + G  P ++ +  ++ G+
Sbjct: 522 ELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGL 581

Query: 454 CSRR 457
           C  +
Sbjct: 582 CKNQ 585



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 165/362 (45%), Gaps = 46/362 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKAIKEAFR--F 83
           +Y  LI    +QGR+ E   + E+M +KGL     +Y+      C K    +  A++   
Sbjct: 293 TYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEM 352

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K   +PT+ST+N L+      + ++ A  +++ +QE G+  D   Y  LI    +    
Sbjct: 353 LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANA 412

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
              F +  EM+ +GI+P   TY +L+   +K  ++ +A   +  + S+ V PD ++FNAL
Sbjct: 413 KKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNAL 472

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I     +  V  AF++L +M+    P  PD +T   +M+     G+V+ ARE        
Sbjct: 473 IDGHCSNSNVKGAFELLKDMDRMKVP--PDEVTFNTIMQGHCREGKVEEARE-------- 522

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                                      ++D+M ++G+ PD +  + LI      G ++ A
Sbjct: 523 ---------------------------LFDEMKRRGIKPDHISFNTLISGYSRRGDIKDA 555

Query: 324 FEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           F +  E  + G +  +++Y++L+ G C N +    A EL + M S  + P  +T   LI 
Sbjct: 556 FRVRNEMLDTGFNPTVLTYNALVQGLCKN-QEGDLAEELLKEMVSKGMTPDDTTYFTLIE 614

Query: 383 AL 384
            +
Sbjct: 615 GI 616



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           +VF+ LI +C      D AF+    M  +   V P   T  +L+       + + A  +Y
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEK--GVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             + +  IK +   + I IN   + G  + A      M   GV P+ V  + ++     +
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+VEAA  IL   K Q I     +Y SL+         ++A +++E M    L+P+    
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC---ERKDDVEVGLMLLSQ 434
           N LI   C+   L        +M   G+ P   TY+ L+ A    +R D+ E    ++ +
Sbjct: 330 NTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAEC---MIKE 386

Query: 435 AKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
            +E G+ P+ + +  +I G C     +KA  L++ +L+  SG    +  +TSL
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLA--SGIKPTKKTYTSL 437



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/354 (19%), Positives = 153/354 (43%), Gaps = 26/354 (7%)

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           I    L+K+C +  + D A E +  + +  +  T E     ++   +    E A  +Y +
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAE 211

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK 353
           M +  +       + +I+     GK++ A + +   +  G+   I++Y++++ G CS+ +
Sbjct: 212 MFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGR 271

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             + A  +   MK  K++P   T  +LI+ +C   +L +  ++  +M   GL P+ + Y+
Sbjct: 272 -VEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-----------GMCSRRYEKAR 462
            L+     K ++++      +  + G+ P +  +  +I             C  +  + +
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 463 TLNEHVLSFN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLP---Y 516
            ++   +++N   +G  +  N     A +++ E + +G  PT +  + +L  L       
Sbjct: 391 GISPDAITYNILINGYCRCAN--AKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMK 448

Query: 517 NADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 568
            AD   + + + GV  DA+      +LIDG         AF LL++     + P
Sbjct: 449 EADDLFKKITSEGVLPDAIM---FNALIDGHCSNSNVKGAFELLKDMDRMKVPP 499



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 123/308 (39%), Gaps = 57/308 (18%)

Query: 314 AGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
            G    +   FE L  ++++ G    I+ +  L+ +C +     +A E +  MK   + P
Sbjct: 126 GGTTNSIREIFEFLAASRDRLGFKSSIV-FDYLIKSCCDMNRADEAFECFYTMKEKGVLP 184

Query: 373 TVSTMNAL-----------------------------------ITALCDGDQLPKTMEVL 397
           T+ T N+L                                   I  LC   +L K  + +
Sbjct: 185 TIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFV 244

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
             M++ G+ PN +TY+ ++        VE    +L+  K   + P+   +  +I GMC +
Sbjct: 245 GHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQ 304

Query: 457 -RYEKARTLNEHVLS---------FNSGRPQIENKWTSLALMVYR-EAIVAGTIPTVEVV 505
            R E+A  + E ++          +N+      NK        Y+ E +  G  PT+   
Sbjct: 305 GRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTY 364

Query: 506 SKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGE--YDPRAFSLLEE 560
           + ++  L +    D  E +++ +   G+S DA+  +    LI+G+       +AF L +E
Sbjct: 365 NSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYN---ILINGYCRCANAKKAFLLHDE 421

Query: 561 AASFGIVP 568
             + GI P
Sbjct: 422 MLASGIKP 429



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS 100
            +LL+DM+R  +   +  ++      C+  K ++EA   F  +      P   +FN L+S
Sbjct: 486 FELLKDMDRMKVPPDEVTFNTIMQGHCREGK-VEEARELFDEMKRRGIKPDHISFNTLIS 544

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
             +   D + AF+V   + + G       Y  L+    K+ + D   E+  EMV+ G+ P
Sbjct: 545 GYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTP 604

Query: 161 NVHTYGALIDGCAK 174
           +  TY  LI+G AK
Sbjct: 605 DDTTYFTLIEGIAK 618


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 183/433 (42%), Gaps = 40/433 (9%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKE 79
           A DV       N +  QG + E + LL D+   G       Y+A    +C +++   ++E
Sbjct: 189 ALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQE 248

Query: 80  AFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
                 ++   P + TFN L+S    +   E   +VL  + E G   D ++Y T+I    
Sbjct: 249 LMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGIC 308

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G ++   E+ + M + G++PNV  Y  L+ G   A +  +       M  K+   D V
Sbjct: 309 KEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDV 368

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            FN L+    Q+G VDR  ++L +M        PD IT   ++      G +D A  + K
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLE--RGCMPDVITYTTVINGFCKEGLIDEAVMLLK 426

Query: 259 MIHKYNIKGTPEVYTIA-----------------------------------INCCSQTG 283
            +     K     YTI                                    IN   + G
Sbjct: 427 SMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 486

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
             E A  +   M   G  PD +  S +ID  G AGK + A E+L    N+G+S   I YS
Sbjct: 487 LVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYS 546

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           S+  A S      K ++++++++   ++      NA+I++LC   +  + +E L+ M S 
Sbjct: 547 SIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSS 606

Query: 404 GLCPNTITYSILL 416
           G  PN  TY+IL+
Sbjct: 607 GCVPNESTYTILI 619



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/490 (22%), Positives = 201/490 (41%), Gaps = 54/490 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V    ++Y  ++R    +GRI++ + +L++M R+G   +  +YH      C+     
Sbjct: 115 AVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRGG--- 171

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              FR                            A +VL  +   G   D      ++   
Sbjct: 172 --GFR---------------------------SAVRVLEDLHARGCALDVGNCNLVLNAI 202

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--- 194
              G VD    +  ++ + G EP+V +Y A++ G      +AK +G    +  + V+   
Sbjct: 203 CDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLC----MAKRWGCVQELMEEMVRMAC 258

Query: 195 -PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+ V FN LI+   ++G  +R  +VLA+M    H   PD      ++      G ++ A
Sbjct: 259 PPNIVTFNTLISYLCRNGLFERVHEVLAQMVE--HGCTPDIRMYATIIDGICKEGHLEVA 316

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E+   +  Y +K     Y   +        WE    +  +M  K    D+V  + L+DF
Sbjct: 317 HEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDF 376

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G V+   E+L++   +G    +I+Y++++          +A+ L + M +   KP 
Sbjct: 377 FCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPN 436

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLL 432
             +   ++  LC  ++     +++S M   G CP N IT++ L+    +K  VE  + LL
Sbjct: 437 TISYTIVLKGLCSAERWVDAEDLMSQMIQQG-CPLNPITFNTLINFLCKKGLVEQAIELL 495

Query: 433 SQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 489
            Q   +G  P+L+ +  +I   G   +  E    LN  V   N G       ++S+A  +
Sbjct: 496 KQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMV---NKGMSPNTIIYSSIASAL 552

Query: 490 YREAIVAGTI 499
            RE  +   I
Sbjct: 553 SREGRINKVI 562



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 125/267 (46%), Gaps = 7/267 (2%)

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +NA++    ++G ++ A  + A +     PV P+  T   +++A    G++  A  V   
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV-----PVPPNAYTYFPVVRALCARGRIADALAVLDE 147

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +      P +Y + +    + G +  A  V +D+  +G   D    + +++     G 
Sbjct: 148 MPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGS 207

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           V+ A  +L++  + G    ++SY++++     AK W    EL E M  +   P + T N 
Sbjct: 208 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 267

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI+ LC      +  EVL+ M   G  P+   Y+ ++    ++  +EV   +L++    G
Sbjct: 268 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 327

Query: 440 VIPNLVMFKCII-GMCS-RRYEKARTL 464
           + PN+V +  ++ G+CS  R+E+   L
Sbjct: 328 LKPNVVCYNTLLKGLCSAERWEETEEL 354



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/182 (17%), Positives = 82/182 (45%), Gaps = 5/182 (2%)

Query: 46  DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMSV 101
           DL+  M ++G   ++ +      N    +  +++A    K +     +P L +++ ++  
Sbjct: 458 DLMSQMIQQGC-PLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 516

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
              +  ++ A ++L ++   G+  +  +Y+++ +  ++ G+++ + ++F  + +  I  +
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSD 576

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
              Y A+I    K G+  +A      M S    P+   +  LI      G V  A ++L 
Sbjct: 577 AVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLT 636

Query: 222 EM 223
           E+
Sbjct: 637 EL 638


>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
 gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
          Length = 543

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 182/388 (46%), Gaps = 15/388 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + GR+ +   LL++M R G+  ++ + +    +    +K         +++ N     T+
Sbjct: 144 KSGRVDDARALLDEMPRHGV-RLNALCYNSLLDCYVRRKDDARVQELLEIMENGGIEATV 202

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+ +L+   +++ D      V+  ++   +  D  LYT +I    ++G V    EVF E
Sbjct: 203 GTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDE 262

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            V  GIEPN  TYG LI+G  K GQ+  A      M+ + V  ++++FN +I    + G 
Sbjct: 263 CVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQGM 322

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE-- 270
           VD A  V A M  E   ++ D  T   L  AC    +V+R  E   ++H    KG P   
Sbjct: 323 VDNALKVKAAM--EKMGIELDVYTYNTL--ACGLC-RVNRMAEAKTLLHIMIEKGVPPNY 377

Query: 271 -VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  I+   + GD   A  ++ +M  KG +P  V  + ++D     G +  A    +E
Sbjct: 378 VTYTTLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKE 437

Query: 330 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            + +G+   + +Y+SL+ G C N K    AL+L+E MK    +P V    ALI+ L    
Sbjct: 438 MEKKGLVPDVYTYASLVHGHCVNGK-VDVALKLFEEMKHRGTEPNVVAYTALISGLAKEG 496

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +  +  ++  DM   GL P+   YS L+
Sbjct: 497 RSEEAFQLYDDMLKAGLTPDDSLYSALV 524



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 168/400 (42%), Gaps = 14/400 (3%)

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           KSG+VD    +  EM   G+  N   Y +L+D   +    A+      IM +  ++    
Sbjct: 144 KSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIMENGGIEATVG 203

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +  L+ +   +G + +   V+ EM A+   V  D     A++ A   AG V RA EV+ 
Sbjct: 204 TYTILVDSLSTAGDISKVEAVVDEMKAK--NVAGDVYLYTAVINAYCRAGNVRRASEVFD 261

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
                 I+     Y + IN   + G  E A  +  DM  +GV  +++  + +ID     G
Sbjct: 262 ECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNTMIDGYCRQG 321

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
            V+ A ++    +  GI + + +Y++L           +A  L   M    + P   T  
Sbjct: 322 MVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYT 381

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI+  C    + +   +  +M   G  P+ +TY++++    +K  +        + ++ 
Sbjct: 382 TLISIHCKEGDMVEARRLFREMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKK 441

Query: 439 GVIPNLVMFKCII-GMCS--------RRYE--KARTLNEHVLSFNSGRPQIENKWTS-LA 486
           G++P++  +  ++ G C         + +E  K R    +V+++ +    +  +  S  A
Sbjct: 442 GLVPDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEA 501

Query: 487 LMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE 526
             +Y + + AG  P   + S ++G L      DI  + ++
Sbjct: 502 FQLYDDMLKAGLTPDDSLYSALVGSLHTDNRKDIHHKQIK 541



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 132/288 (45%), Gaps = 10/288 (3%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           ++DG  K+G+V  A      M    V+ + + +N+L+        V R  D   +   E+
Sbjct: 138 VVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCY-----VRRKDDARVQELLEI 192

Query: 228 HPVDPDHITIGA---LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
                   T+G    L+ + + AG + +   V   +   N+ G   +YT  IN   + G+
Sbjct: 193 MENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGN 252

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
              A  V+D+    G+ P+E     LI+     G++EAA  +L + + +G+    I +++
Sbjct: 253 VRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIFNT 312

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           ++           AL++   M+ + ++  V T N L   LC  +++ +   +L  M   G
Sbjct: 313 MIDGYCRQGMVDNALKVKAAMEKMGIELDVYTYNTLACGLCRVNRMAEAKTLLHIMIEKG 372

Query: 405 LCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + PN +TY+ L+ + C+  D VE   +    A + G +P++V +  ++
Sbjct: 373 VPPNYVTYTTLISIHCKEGDMVEARRLFREMAGK-GAMPSVVTYNVMM 419



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 1/190 (0%)

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +P   ++ ++   ++G  + A ++ D+M + GV  + +  ++L+D            E+L
Sbjct: 131 SPLAASVVVDGFCKSGRVDDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELL 190

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +  +N GI   + +Y+ L+ + S A +  K   + + MK+  +   V    A+I A C  
Sbjct: 191 EIMENGGIEATVGTYTILVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRA 250

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             + +  EV  +    G+ PN  TY +L+    +   +E   MLL+  +  GV  N ++F
Sbjct: 251 GNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLLADMQGRGVGHNQIIF 310

Query: 448 KC-IIGMCSR 456
              I G C +
Sbjct: 311 NTMIDGYCRQ 320



 Score = 42.4 bits (98), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           I++G I E     ++ME+KGL+     Y +     C + K +  A + F+ + +    P 
Sbjct: 423 IKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGK-VDVALKLFEEMKHRGTEPN 481

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +  +  L+S  A    SE AFQ+   + +AGL  D  LY+ L+ +     + D
Sbjct: 482 VVAYTALISGLAKEGRSEEAFQLYDDMLKAGLTPDDSLYSALVGSLHTDNRKD 534


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 164/357 (45%), Gaps = 2/357 (0%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           FN+L++  +  +  + AF VL  + + G + D   +++LI       K     E F EMV
Sbjct: 122 FNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMV 181

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            +G +PN+HTY  +I G  K G+   A G    M     +PD V++N +I    +   V 
Sbjct: 182 ASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVS 241

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A D+ +E+  +   V PD  T   LM    N+ Q + A  ++  +   NI      + I
Sbjct: 242 EALDIFSEIKGK--GVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            ++   + G    A  +   M +KGV P+    ++L++      KV  A  +      +G
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG 359

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
               ++SY+ L+     A+   +A EL++ M    L P     N LI+ LC   +  +  
Sbjct: 360 CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAR 419

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           E+  DM++ G  P+ +T +ILL +  +   ++  L L    ++  + PNLV +  +I
Sbjct: 420 ELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILI 476



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 137/295 (46%), Gaps = 2/295 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T+N ++        +  A  +L+ + +AG + D  +Y T+I    K   V    ++
Sbjct: 187 PNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDI 246

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F E+   G+ P+V TY  L+ G   + Q  +A   +  M S N+ PD V FN L+    +
Sbjct: 247 FSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCK 306

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +  A  ++  M  +   V+P++ T  +LM       +V  AR V+  +         
Sbjct: 307 EGMLSEAQGIIKIMIEK--GVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNV 364

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN   +    + A  ++D+M+ +G+IP+    + LI     AG+   A E+ ++
Sbjct: 365 VSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKD 424

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            + QG S  +++ + L+ +         AL L+  M+   LKP + T + LI A+
Sbjct: 425 MQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAM 479



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 147/352 (41%), Gaps = 6/352 (1%)

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
           C+ +   DA+F  F+ M++    P +  +  L+    +             +    ++ D
Sbjct: 60  CSLTNIEDALFS-FNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERD 118

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
              FN LI    +   VD AF VL ++       +PD +T  +L+       +  RA E 
Sbjct: 119 VFHFNILINCFSRLQRVDFAFSVLGKIIK--LGFEPDAVTFSSLINGLCFEDKFARAMEF 176

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  +     +     Y   I    + G    A  +   M K G  PD V  + +ID    
Sbjct: 177 FDEMVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCK 236

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
              V  A +I  E K +G+   + +YS LM    N+   ++A  L+  M S+ + P V T
Sbjct: 237 DRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVT 296

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            N L+  LC    L +   ++  M   G+ PN  TY+ L+     ++ V    M+     
Sbjct: 297 FNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMI 356

Query: 437 EDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLA 486
             G +PN+V +  +I G C ++R ++AR L +  +SF    P   N  T ++
Sbjct: 357 TKGCMPNVVSYNILINGYCKAQRIDEARELFDE-MSFRGLIPNTFNYNTLIS 407



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 129/301 (42%), Gaps = 11/301 (3%)

Query: 28  QLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            LH+YN +I+     G+ +  + LL+ M++ G      +Y+     +CK  + + EA   
Sbjct: 188 NLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCK-DRLVSEALDI 246

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F  +      P + T+++LM    +S   E A  +   +    +  D   +  L+    K
Sbjct: 247 FSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCK 306

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G +     +   M+  G+EPN  TY +L++G     +V +A   +  M +K   P+ V 
Sbjct: 307 EGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVS 366

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +N LI    ++  +D A ++  EM+     + P+      L+     AG+   ARE++K 
Sbjct: 367 YNILINGYCKAQRIDEARELFDEMS--FRGLIPNTFNYNTLISGLCQAGRHCEARELFKD 424

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +            TI ++   + G  + A  ++  M    + P+ V    LI     +GK
Sbjct: 425 MQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGK 484

Query: 320 V 320
           +
Sbjct: 485 I 485



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 88/186 (47%), Gaps = 3/186 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           ++L ++G +SE   +++ M  KG+      Y++     C   K  +    F  ++     
Sbjct: 302 DKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCM 361

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + ++N+L++    ++  + A ++   +   GL  +   Y TLI+   ++G+     E+
Sbjct: 362 PNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEAREL 421

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M   G  P++ T   L+D   K G +  A   +  M+   +KP+ V ++ LI A  +
Sbjct: 422 FKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYK 481

Query: 210 SGAVDR 215
           SG + R
Sbjct: 482 SGKIYR 487


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 154/325 (47%), Gaps = 2/325 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ML+S      D   AF +   + ++GL+ D  +Y  LI    K G +D    +  +M
Sbjct: 481 TYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKM 540

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               ++P+   +  +I+G A AG + +A     +MR     P  + +NALI    +   V
Sbjct: 541 QKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQV 600

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           +RA  VL +M+  +  + P+  T   +M+  A  G + +A E +  I +  +K    +Y 
Sbjct: 601 ERAVSVLNKMS--IAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYE 658

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++++ K  
Sbjct: 659 TLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKED 718

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+   I +Y+S + AC  A + Q+A ++ E M  + LKP + T   LI          + 
Sbjct: 719 GVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRA 778

Query: 394 MEVLSDMKSLGLCPNTITYSILLVA 418
           ++   +MK  GL P+   Y  L+ +
Sbjct: 779 LKSFEEMKLAGLKPDEAAYHCLVTS 803



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 182/404 (45%), Gaps = 33/404 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +P P+   F +++   A   D   A      ++  G++ +  ++T+L+   A +  +
Sbjct: 261 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 320

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
             +     EM   GIE  + TY  +I G AK      A   +   ++K    + ++++ +
Sbjct: 321 RGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNI 380

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  QSG +DRA +++ EM  +    P+D                              
Sbjct: 381 IHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCF 440

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  I+ G L+      G+V +A  + K +  Y IK   + Y++ I+      D+  A S
Sbjct: 441 TPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFS 500

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           ++++M K G+ PD    + LI+     G ++ A  IL++ + + +     ++  ++   +
Sbjct: 501 IFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFA 560

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A + ++AL + + M+     PTV T NALI  L   +Q+ + + VL+ M   G+ PN  
Sbjct: 561 VAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEH 620

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+I++       D+       ++ KE G+  ++ +++ ++  C
Sbjct: 621 TYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRAC 664



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 145/322 (45%), Gaps = 2/322 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  LI    K GKV     +  EM + GI+ N  TY  LI G       A AF  +  M 
Sbjct: 447 YGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEML 506

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
              ++PDR ++N LI A  + G +DRA  +L +M  E   + P +     +++  A AG 
Sbjct: 507 KSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKER--MQPSNRAFRPIIEGFAVAGD 564

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           + RA  +  ++ +     T   Y   I+   +    E A SV + M+  G+ P+E   + 
Sbjct: 565 MKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTI 624

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           ++      G +  AFE   + K  G+ + +  Y +L+ AC  +   Q AL +   M + K
Sbjct: 625 IMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQK 684

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           +       N LI        + +  +++  MK  G+ PN  TY+  + AC +  D++   
Sbjct: 685 IARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQ 744

Query: 430 MLLSQAKEDGVIPNLVMFKCII 451
            ++ +  + G+ PNL  +  +I
Sbjct: 745 KVIEEMADVGLKPNLKTYTTLI 766



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/418 (21%), Positives = 179/418 (42%), Gaps = 5/418 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAF-RFFKLVPNPTLS 93
           + G +    +L+ +ME  G+      YH+    + + + +K     F R  +    P++ 
Sbjct: 386 QSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSII 445

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++  L+++         A  + + ++  G+K + K Y+ LI+           F +F EM
Sbjct: 446 SYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEM 505

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           + +G++P+   Y  LI+   K G + +A      M+ + ++P    F  +I     +G +
Sbjct: 506 LKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDM 565

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            RA ++L  M        P  +T  AL+       QV+RA  V   +    I      YT
Sbjct: 566 KRALNILDLMRRS--GCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYT 623

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I +   +  GD   A   +  + + G+  D      L+     +G++++A  + +E   Q
Sbjct: 624 IIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQ 683

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            I+     Y+ L+   +   +  +A +L + MK   + P + T  + I A C    + + 
Sbjct: 684 KIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 743

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +V+ +M  +GL PN  TY+ L+    +    +  L    + K  G+ P+   + C++
Sbjct: 744 QKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLV 801



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 157/359 (43%), Gaps = 3/359 (0%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N++ + C S  + + A +++R ++E G+ A    Y +++              VF  +  
Sbjct: 379 NIIHAHCQSG-NMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKE 437

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
               P++ +YG LI+   K G+V KA      M S  +K +   ++ LI+          
Sbjct: 438 CCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFAN 497

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           AF +  EM      + PD      L++A    G +DRA  + + + K  ++ +   +   
Sbjct: 498 AFSIFEEMLKS--GLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPI 555

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I   +  GD + A ++ D M + G  P  +  +ALI       +VE A  +L +    GI
Sbjct: 556 IEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGI 615

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           +    +Y+ +M   +   +  KA E +  +K   LK  V     L+ A C   ++   + 
Sbjct: 616 TPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALA 675

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           V  +M +  +  NT  Y+IL+    R+ DV     L+ Q KEDGV PN+  +   I  C
Sbjct: 676 VTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINAC 734



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 163/356 (45%), Gaps = 7/356 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFFKLVPN 89
           N  I+ G++++ I + ++ME  G+   +K Y    + F ++     A        K    
Sbjct: 452 NLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQ 511

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P  + +N+L+       + + A ++L  +Q+  ++   + +  +I   A +G +     +
Sbjct: 512 PDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNI 571

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M  +G  P V TY ALI G  K  QV +A      M    + P+   +  ++     
Sbjct: 572 LDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAA 631

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G + +AF+   ++      +  D      L++AC  +G++  A  V + +    I    
Sbjct: 632 NGDIGKAFEYFTKIKE--GGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNT 689

Query: 270 EVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            VY I I+  ++ GD WE A  +   M + GV P+    ++ I+    AG ++ A ++++
Sbjct: 690 FVYNILIDGWARRGDVWE-AADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIE 748

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E  + G+   + +Y++L+   + A    +AL+ +E MK   LKP  +  + L+T+L
Sbjct: 749 EMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTSL 804



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 36/161 (22%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    R+G + E  DL++ M+  G                               V
Sbjct: 692 YNILIDGWARRGDVWEAADLMKQMKEDG-------------------------------V 720

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P + T+   ++ C  + D + A +V+  + + GLK + K YTTLI   AK+   D   
Sbjct: 721 P-PNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRAL 779

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           + F EM  AG++P+   Y  L+        V +     GI+
Sbjct: 780 KSFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIL 820


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 207/462 (44%), Gaps = 13/462 (2%)

Query: 22  AHDVSEQLHSYNRLIRQ---GR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V   + +Y  LI +   G+ + E   L E M R G+L       A    +C+  +  
Sbjct: 250 ADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQ-F 308

Query: 78  KEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EA+  F    K+   P   T+  L+   A ++    +  +L  +   G+  D  +YT L
Sbjct: 309 SEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTAL 368

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    K GK++   +V     +  I PN  TY  L+D   +AG +  A      M  K+V
Sbjct: 369 MDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSV 428

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+ V F+++I    + G + +A D + +M      + P+ +T G L+         + A
Sbjct: 429 IPNVVTFSSIINGLVKRGCLGKAADYMRKMKDS--GIAPNVVTYGTLIDGFFKFQGQEAA 486

Query: 254 REVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
            +VY+ M+H+  ++    V    +N   + G+ E A +++ DM ++G++ D V  + L+D
Sbjct: 487 LDVYRDMLHE-GVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMD 545

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G + AAF++ QE   + +S   + Y+  +        + +A    + M++  L+P
Sbjct: 546 GLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEP 605

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
             +T N +I A C   +  K +++L +MK   + PN ITY+ L+V       V+    LL
Sbjct: 606 DQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLL 665

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
           ++    G  P  +  + ++  CS        L  H L   +G
Sbjct: 666 NEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAG 707



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 199/459 (43%), Gaps = 42/459 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           + L +  R SE + LL +M  +G++ MD V +    +    +  I+EA    +   +   
Sbjct: 335 DSLAKARRGSESLGLLGEMVSRGVV-MDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNI 393

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+ +L+     + + +GA QVL  ++E  +  +   ++++I    K G +    +
Sbjct: 394 TPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAAD 453

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              +M ++GI PNV TYG LIDG  K      A   Y  M  + V+ +  V ++L+    
Sbjct: 454 YMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLR 513

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G ++ A  +  +M+     +  DH+    LM      G +  A +V + + + N+   
Sbjct: 514 KNGNIEGAEALFKDMDE--RGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPD 571

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             VY + INC    G +  A S   +M   G+ PD+   + +I      GK   A ++L+
Sbjct: 572 AVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLK 631

Query: 329 EAKNQGISVGIISYSSL-----------------------------------MGACSNAK 353
           E K   I   +I+Y++L                                   + ACS ++
Sbjct: 632 EMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSR 691

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
                LE++E M    L   ++  N L+  LC          VL +M + G+ P+TIT++
Sbjct: 692 RPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFN 751

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            L++   +   ++    + +Q    G+ PN+  F  ++G
Sbjct: 752 ALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLG 790



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 182/422 (43%), Gaps = 37/422 (8%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           A FF+   +  A++   R       P + T+  L+      K  + AF +   +  +G+ 
Sbjct: 230 AGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVL 289

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
            D    + L+    + G+    + +F EM   G+ PN  TY  LID  AKA + +++ G 
Sbjct: 290 PDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGL 349

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
            G M S+ V  D V++ AL+   G+ G ++ A DVL   +A+   + P+ +T   L+ A 
Sbjct: 350 LGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLR--HAQSDNITPNFVTYTVLVDAH 407

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN------CCSQTGDW------------- 285
             AG +D A +V   + + ++      ++  IN      C  +  D+             
Sbjct: 408 CRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNV 467

Query: 286 ----------------EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
                           E A  VY DM  +GV  +   + +L++     G +E A  + ++
Sbjct: 468 VTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKD 527

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G+ +  ++Y++LM       N   A ++ + +    L P     N  I  LC   +
Sbjct: 528 MDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGK 587

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             +    L +M++ GL P+  TY+ ++ A  R+      L LL + K + + PNL+ +  
Sbjct: 588 FSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTT 647

Query: 450 II 451
           ++
Sbjct: 648 LV 649



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 203/465 (43%), Gaps = 16/465 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPN 89
           N L+++G + +  D +  M+  G+      Y      FF   + Q+A  + +R   L   
Sbjct: 440 NGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKF-QGQEAALDVYRDM-LHEG 497

Query: 90  PTLSTF--NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
              + F  + L++    + + EGA  + + + E GL  D   YTTL+    K+G + A F
Sbjct: 498 VEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAF 557

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +V  E++   + P+   Y   I+     G+ ++A      MR+  ++PD+  +N +I A 
Sbjct: 558 KVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAAR 617

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G   +A  +L EM  + + + P+ IT   L+     AG V +A+ +   +       
Sbjct: 618 CREGKTSKALKLLKEM--KRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAP 675

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   +   +  CS +   +    +++ M   G+  D    + L+      G    A  +L
Sbjct: 676 TSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVL 735

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E   +GI+   I++++L+     + +   A  +Y  M    L P ++T N L+  L   
Sbjct: 736 DEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESA 795

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++ +   VLSDMK +GL PN +TY IL+    +K +    L L  +    G IP    +
Sbjct: 796 GRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTY 855

Query: 448 KCII------GMCSRRYEKARTLNEH-VLSFNSGRPQIENKWTSL 485
             ++      GM ++  E    +    VL  +S    + N W+ L
Sbjct: 856 NSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKL 900



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 123/507 (24%), Positives = 224/507 (44%), Gaps = 27/507 (5%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTLITTCAK 139
           F+ VP  TL+  ++++S C S +    A  +LR          + AD   Y   +   ++
Sbjct: 69  FRPVPGDTLTLNSIILSYC-SLRSLRPALSLLRSSSGPQSQSQVAADTVSYNIFLAALSE 127

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG-AYGIMRSKNVKP-DR 197
            G       V  EM   G+  +  T    + G  + G V +A   A  ++R + +   D 
Sbjct: 128 QGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEMLVRGRGIDGLDV 187

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V +NALI    +   +  A  V+  M  +   V  D +   +L+    ++G  D A EV 
Sbjct: 188 VGWNALIDGYCKVQDMAAALAVVERMTTQ--GVALDVVGYNSLVAGFFHSGDADAALEVV 245

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + +    ++     YT  I    +    + A S+Y+ M + GV+PD V LSAL+D     
Sbjct: 246 ERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRD 305

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+   A+ + +E    G++   ++Y +L+ + + A+   ++L L   M S  +   +   
Sbjct: 306 GQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMY 365

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
            AL+  L    ++ +  +VL   +S  + PN +TY++L+ A  R  +++    +L Q +E
Sbjct: 366 TALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEE 425

Query: 438 DGVIPNLVMFKCII-GMCSR----------RYEKARTLNEHVLSFNS---GRPQIENKWT 483
             VIPN+V F  II G+  R          R  K   +  +V+++ +   G  + + +  
Sbjct: 426 KSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEA 485

Query: 484 SLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSL 543
             AL VYR+ +  G      VV  ++  L+   N +  E L +++      L   N  +L
Sbjct: 486 --ALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTL 543

Query: 544 IDGFGEYD--PRAFSLLEEAASFGIVP 568
           +DG  +    P AF + +E     + P
Sbjct: 544 MDGLFKTGNMPAAFKVGQELMEKNLSP 570


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 198/443 (44%), Gaps = 11/443 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N L + G+  E   L ++M  KGL   D  Y     + C+  K +  A  F  K++    
Sbjct: 374 NSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGK-LDTAIHFLGKMIMAGI 432

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             T+  +N L++      +   A      + + GLK     YT+LI+     GK+   F 
Sbjct: 433 KITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFR 492

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++HEM   GI PN +T+  LI    +A ++  AF  +  M  +N+ P+ V +N +I    
Sbjct: 493 LYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHC 552

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G   +AF++L +M  +   + PD  T   L+ +  + G+V  A++    +H+ + K  
Sbjct: 553 KEGNTVKAFELLNQMVQK--GLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLN 610

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+  ++   + G    A  V  +M K+GV  D V  + LID         A F +L+
Sbjct: 611 EMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLK 670

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
              +Q +    + Y+S++   S A + +KA  +++ M      P + T   LI  LC   
Sbjct: 671 NMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAG 730

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            + K   +  +M      PN +TY   L    R+  +E  + L +   + G++ N V + 
Sbjct: 731 LMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYN 789

Query: 449 CII-GMC--SRRYEKARTLNEHV 468
            ++ G C   R  E  + L+E +
Sbjct: 790 ILVRGFCKLGRVEEATKLLDEMI 812



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 182/394 (46%), Gaps = 12/394 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVP 88
           L R  R+++   L ++M  + ++  +  Y+      CK    +K AF          LVP
Sbjct: 516 LFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVK-AFELLNQMVQKGLVP 574

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           + T +   ++ S+C++ +  E A + +  +     K +   Y+ L+    K G++     
Sbjct: 575 D-TYTYRPLISSLCSTGRVCE-AKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALG 632

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  EMV  G++ ++  Y  LIDG  K    +  FG    M  + ++PD+V++ ++I    
Sbjct: 633 VCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYS 692

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G+V +AF +   M  E     P+ +T   L+     AG +D+A  ++K +   N    
Sbjct: 693 KAGSVKKAFGIWDIMIDE--GCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPN 750

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++  ++ G  E A  +++DM K G++ + V  + L+      G+VE A ++L 
Sbjct: 751 HVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLGRVEEATKLLD 809

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  +  I    I+YS+++  C    N   A+E ++ M +  LKP     N LI   C   
Sbjct: 810 EMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAG 869

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           +L K  E+  DM   G+ PN  T+  L     RK
Sbjct: 870 ELGKAFELRDDMIRRGVKPNQATHKSLSHGASRK 903



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 141/322 (43%), Gaps = 2/322 (0%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N+L+     +K    A ++   + + GL A    Y TL+    K  + +    V  EM+
Sbjct: 264 YNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMI 323

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G  P      +L++G  + G+V  AF     ++     P   V+NALI +  + G  D
Sbjct: 324 ELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFD 383

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A  +  EM  +   +  + +T   L+ +    G++D A      +    IK T   Y  
Sbjct: 384 EAELLFKEMGEK--GLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNS 441

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            IN   + G+   A S +D+M  KG+ P  V  ++LI    + GK+  AF +  E   +G
Sbjct: 442 LINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKG 501

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I+    ++++L+ A   A     A  L++ M    + P   T N +I   C      K  
Sbjct: 502 IAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAF 561

Query: 395 EVLSDMKSLGLCPNTITYSILL 416
           E+L+ M   GL P+T TY  L+
Sbjct: 562 ELLNQMVQKGLVPDTYTYRPLI 583



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/482 (21%), Positives = 197/482 (40%), Gaps = 54/482 (11%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF- 67
           L+F    G H N+ H         + L+          LL+ +  +G LD  +V+ A   
Sbjct: 89  LRFFNFLGLHKNFNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLD 148

Query: 68  -FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
            F  C    ++                 F++L+      K    +  + RL+++  L   
Sbjct: 149 CFEKCDFISSL----------------GFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQ 192

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
            +    ++   AK  +VD +  +F E+++ GI P+++ Y A+I    +    AKA     
Sbjct: 193 VRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQ 252

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDV-------------------------LA 221
            M S ++  + VV+N LI    ++  V  A ++                         + 
Sbjct: 253 RMESSDL--NVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQ 310

Query: 222 EMNAEVHPVD--------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           E       +D        P    + +L++     G+V  A ++   + K     +  VY 
Sbjct: 311 EFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYN 370

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             IN   + G ++ A  ++ +M +KG+  ++V  S LID     GK++ A   L +    
Sbjct: 371 ALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMA 430

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI + +  Y+SL+       N   A+  ++ M    LKPTV +  +LI+  C+  +L + 
Sbjct: 431 GIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEA 490

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
             +  +M   G+ PNT T++ L+ A  R + +     L  +  E  ++PN V +  +I G
Sbjct: 491 FRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEG 550

Query: 453 MC 454
            C
Sbjct: 551 HC 552



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 141/328 (42%), Gaps = 3/328 (0%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  LI    K+ +V    E+ + ++  G+  +  TY  L+ G  K  +     G    M
Sbjct: 263 VYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEM 322

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
                 P     ++L+    + G V  AFD++  +  +V  + P      AL+ +    G
Sbjct: 323 IELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVK-KVGAM-PSLFVYNALINSLCKDG 380

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           + D A  ++K + +  +      Y+I I+   + G  + A      M   G+       +
Sbjct: 381 KFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYN 440

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           +LI+     G + AA     E  ++G+   ++SY+SL+    N     +A  LY  M   
Sbjct: 441 SLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGK 500

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            + P   T   LI+AL   +++     +  +M    + PN +TY++++    ++ +    
Sbjct: 501 GIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKA 560

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-GMCS 455
             LL+Q  + G++P+   ++ +I  +CS
Sbjct: 561 FELLNQMVQKGLVPDTYTYRPLISSLCS 588



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 12/141 (8%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++N+L+         E A ++L  + +  +  DC  Y+T+I  C + G +D   E +  M
Sbjct: 787 SYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTM 846

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +N G++P+   Y  LI GC  AG++ KAF     M  + VKP++    +L      S   
Sbjct: 847 LNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSL------SHGA 900

Query: 214 DRAFDVLAEMNAEVHPVDPDH 234
            R F +        HPV P++
Sbjct: 901 SRKFSI------STHPVMPEN 915


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 200/436 (45%), Gaps = 9/436 (2%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKA 76
           Y  D+       N      RIS+ + L++ M   G          + H  F +  K+ +A
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH-NKASEA 207

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +    +  +    P L T+  +++      D + A  +L+ +++  ++AD  +Y T+I  
Sbjct: 208 VALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDG 267

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K   +D    +F EM N GI P+V TY +LI      G+ + A      M  + + P+
Sbjct: 268 LCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPN 327

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V F+ALI A  + G +  A  +  EM      +DPD  T  +L+       ++D A+ +
Sbjct: 328 VVTFSALIDAFVKEGKLVEAEKLYDEMIK--RSIDPDIFTYSSLINGFCMHDRLDEAKHM 385

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           ++++   +       Y+  I    +    E    ++ +M+++G++ + V  + LI     
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVS 375
           A   + A  + ++  + G+   I++Y+ L+ G C N K   KA+ ++E+++   ++P + 
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGK-LAKAMVVFEYLQRSTMEPDIY 504

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N +I  +C   ++    E+  ++   G+ PN I Y+ ++    RK   E    LL + 
Sbjct: 505 TYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564

Query: 436 KEDGVIPNLVMFKCII 451
           KEDG +PN   +  +I
Sbjct: 565 KEDGPLPNSGTYNTLI 580



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 203/442 (45%), Gaps = 14/442 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQK---A 76
           +S  L++Y+  I    R+ ++S  + +L  M + G  + D V  +   N  C S++   A
Sbjct: 114 ISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGY-EPDIVTLSSLLNGYCHSKRISDA 172

Query: 77  IKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           +    +  ++   P   TF  L+  +   +K SE    V ++VQ  G + D   Y T++ 
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR-GCQPDLVTYGTVVN 231

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K G +D    +  +M    IE +V  Y  +IDG  K   +  A   +  M +K ++P
Sbjct: 232 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRP 291

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D   +++LI+     G    A  +L++M      ++P+ +T  AL+ A    G++  A +
Sbjct: 292 DVFTYSSLISCLCNYGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKLVEAEK 349

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +Y  + K +I      Y+  IN        + A  +++ M  K   P+ V  S LI    
Sbjct: 350 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFC 409

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            A +VE   E+ +E   +G+    ++Y++L+     A++   A  +++ M S+ + P + 
Sbjct: 410 KAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNIL 469

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N L+  LC   +L K M V   ++   + P+  TY+I++    +   VE G  L    
Sbjct: 470 TYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529

Query: 436 KEDGVIPNLVMFKCII-GMCSR 456
              GV PN++ +  +I G C +
Sbjct: 530 SLKGVSPNVIAYNTMISGFCRK 551



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 183/448 (40%), Gaps = 39/448 (8%)

Query: 58  DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           D  ++   R  ++ K   A+       K  P P++  FN L+S  A     E    +   
Sbjct: 49  DYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQ 108

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +Q  G+  D   Y+  I    +  ++     V  +M+  G EP++ T  +L++G   + +
Sbjct: 109 MQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKR 168

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           ++ A      M     KPD   F  LI           A  ++ +M        PD +T 
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ--RGCQPDLVTY 226

Query: 238 GALMKACANAGQVDRAREVYKMIHK---------YNI----------------------- 265
           G ++      G +D A  + K + K         YN                        
Sbjct: 227 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN 286

Query: 266 KGT-PEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           KG  P+V+T +  I+C    G W  A  +  DM ++ + P+ V  SALID     GK+  
Sbjct: 287 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 346

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A ++  E   + I   I +YSSL+          +A  ++E M S    P V T + LI 
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIK 406

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
             C   ++ + ME+  +M   GL  NT+TY+ L+    +  D +   M+  Q    GV P
Sbjct: 407 GFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHP 466

Query: 443 NLVMFKCII-GMCSR-RYEKARTLNEHV 468
           N++ +  ++ G+C   +  KA  + E++
Sbjct: 467 NILTYNILLDGLCKNGKLAKAMVVFEYL 494



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 185/389 (47%), Gaps = 11/389 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           N L ++G I   + LL+ ME KG ++ D V Y+     +CK  K + +A   F  + N  
Sbjct: 231 NGLCKRGDIDLALSLLKKME-KGKIEADVVIYNTIIDGLCK-YKHMDDALNLFTEMDNKG 288

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + T++ L+S   +      A ++L  + E  +  +   ++ LI    K GK+    
Sbjct: 289 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +++ EM+   I+P++ TY +LI+G     ++ +A   + +M SK+  P+ V ++ LI   
Sbjct: 349 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGF 408

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++  V+   ++  EM+     +  + +T   L+     A   D A+ V+K +    +  
Sbjct: 409 CKAKRVEEGMELFREMSQ--RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHP 466

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y I ++   + G    A  V++ + +  + PD    + +I+    AGKVE  +E+ 
Sbjct: 467 NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF 526

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCD 386
                +G+S  +I+Y++++       + ++A  L + MK     P   T N LI A L D
Sbjct: 527 CNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRD 586

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           GD+   + E++ +M+S G   +  T  ++
Sbjct: 587 GDR-EASAELIKEMRSCGFAGDASTIGLV 614


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 182/379 (48%), Gaps = 22/379 (5%)

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M++ G+ PNV+TY  LI      G   +A      MR     P+ V +N L+ A  +
Sbjct: 138 FDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFR 197

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G VD A  ++  M      + P+ +T  +++     AG+++ AR+V+  + +  +    
Sbjct: 198 AGEVDGAERLVGMMLDG--GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDG 255

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +    + G    A SV+ +MT+KG++PD V  ++LI     AG +E A  ++++
Sbjct: 256 VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQ 315

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            + +G+ +  +++++L+           AL     M+  ++KP+V   NALI   C   +
Sbjct: 316 MRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGR 375

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  E+L +M++ GL P+ +TYS ++ A  +  D      L  Q  E GV+P+ + +  
Sbjct: 376 MDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSS 435

Query: 450 IIG-MCSRRYEKARTLNEHVLSFNS---GRPQIENKWTSL------------ALMVYREA 493
           +I  +C    E+ R  + HVL  N    G    E  +TSL            AL ++ + 
Sbjct: 436 LIRVLC----EEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKM 491

Query: 494 IVAGTIPTVEVVSKVLGCL 512
           + AG +P V   S ++  L
Sbjct: 492 VKAGVLPDVVTYSVLINGL 510



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 189/436 (43%), Gaps = 38/436 (8%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  +++YN LIR    +G   E + +L DM   G                         
Sbjct: 146 VAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGC------------------------ 181

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P + T+N L++    + + +GA +++ ++ + GLK +   + +++    K+
Sbjct: 182 --------GPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKA 233

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK++   +VF EM+  G+ P+  +Y  L+ G  KAG   +A   +  M  K + PD V F
Sbjct: 234 GKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTF 293

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
            +LI    ++G ++ A  ++ +M      +  + +T  AL+      G +D A    + +
Sbjct: 294 TSLIHVMCKAGNLEWAVTLVRQMRER--GLQMNEVTFTALIDGFCKKGFLDDALLAVRGM 351

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            +  IK +   Y   IN     G  + A  +  +M  KG+ PD V  S +I         
Sbjct: 352 RQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDT 411

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            +AFE+ Q+   +G+    I+YSSL+      K    A  L+++M  + L+P   T  +L
Sbjct: 412 HSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSL 471

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I   C    + + + +   M   G+ P+ +TYS+L+    +         LL +   +  
Sbjct: 472 IDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEP 531

Query: 441 IPNLVMFKCIIGMCSR 456
           IP    +  ++  C +
Sbjct: 532 IPANTKYDALMHCCRK 547



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 138/322 (42%), Gaps = 57/322 (17%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI      GR+ E  +LL +ME KGL                               
Sbjct: 363 YNALINGYCMVGRMDEARELLHEMEAKGL------------------------------- 391

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + T++ ++S    + D+  AF++ + + E G+  D   Y++LI    +  ++    
Sbjct: 392 -KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAH 450

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F  M+  G++P+  TY +LIDG  K G V +A   +  M    V PD V ++ LI   
Sbjct: 451 VLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGL 510

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---------------GQVDR 252
            +S     A  +L ++  E  P+ P +    ALM  C  A               G ++ 
Sbjct: 511 SKSARAMEAQQLLFKLYHE-EPI-PANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNE 568

Query: 253 AREVYKMI--HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           A +VY+ +    +N+ G+  VY++ I+   + G+   A S +  M ++G  P+     +L
Sbjct: 569 ADKVYQSMLDRNWNLDGS--VYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISL 626

Query: 311 IDFAGHAGKVEAAFEILQEAKN 332
           I      G V  A +++Q+  N
Sbjct: 627 IRGLFENGMVVEADQVIQQLLN 648


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 207/456 (45%), Gaps = 21/456 (4%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +++YN LI     +GR S+ +  L  M + G       +       C     + EA + F
Sbjct: 313 VYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVV-EARKIF 371

Query: 85  KLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +     +P ++ +N LMS    ++D   A  +   +++ G+  D   +  L+    K 
Sbjct: 372 EGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKY 431

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK    +E+F +   + + P+   Y   + G   AGQ+ +A      M  K + P  V F
Sbjct: 432 GKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAF 491

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV-YKM 259
           N++I A  ++G  D A      M   +  + P   T  +++   +  G++  AR++ YKM
Sbjct: 492 NSVIAAYSRAGFEDNAHKAYKIM--LMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKM 549

Query: 260 IHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           I K    G P     +T+ ++   + GD   A S++ +M  +G+ PD +  SA ID    
Sbjct: 550 IDK----GLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSK 605

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           AG VE A+E   E   +G       Y+SL+    N     +AL+L   M+   L P + T
Sbjct: 606 AGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFT 665

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            N +I   C   ++    +  ++M  +G+ P+T+TY+ L+    +  D+      L++  
Sbjct: 666 TNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMY 725

Query: 437 EDGVIPNLVMFKC-IIGMC-SRRYEKARTLNEHVLS 470
             G  P++  +   I G C S++  +A T+ + +++
Sbjct: 726 ASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIA 761



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 196/450 (43%), Gaps = 49/450 (10%)

Query: 38  QGRISECIDLLEDMERKGLLD--------MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89
           +G + E   + E ++  GL          M   + AR  +VC++   + E  R   + P+
Sbjct: 361 EGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKAR--DVCQAN-MLYEEMRDKGIAPD 417

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
              +TFN+L++          ++++ R    + L  DC LY   +     +G++D   + 
Sbjct: 418 G--ATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQF 475

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M+  G+ P+V  + ++I   ++AG    A  AY IM    + P     ++++    +
Sbjct: 476 LEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSK 535

Query: 210 SGAVDRAFDVLAEMNAEVHPVD---------------------------------PDHIT 236
            G +  A D+L +M  +  PV+                                 PD I 
Sbjct: 536 KGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIA 595

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             A +   + AG V+ A E +  + K        VY   I+     G    A  +  +M 
Sbjct: 596 FSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMR 655

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           +KG++PD    + +I+     G++++AF+   E  + G++   ++Y++L+G      +  
Sbjct: 656 QKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMV 715

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            A E    M +    P ++T N  I   C   ++ + + +L ++ ++G+ PNT+TY+ ++
Sbjct: 716 SADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMM 775

Query: 417 VA-CERKDDVEVGLMLLSQAKEDGVIPNLV 445
            A C   D ++  ++L ++  +   +PN+V
Sbjct: 776 NAVC--TDMLDRAMVLTAKLLKMAFVPNVV 803



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 185/388 (47%), Gaps = 16/388 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVPNPT 91
           + G+ ++  +L  D     L+    +Y      +C + + + EA +F      K +P P+
Sbjct: 430 KYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQ-LDEAMQFLEDMLEKGMP-PS 487

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +  FN +++  + +   + A +  +++   GL       ++++   +K G++    ++ +
Sbjct: 488 VVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLY 547

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M++ G+  N   +  L+DG  K G  A A   +  M ++ + PD + F+A I    ++G
Sbjct: 548 KMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAG 607

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V+ A++  +EM+ +     P++    +L+    N G++  A ++ + + +  +   P++
Sbjct: 608 LVEEAYEAFSEMSKK--GFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGL--LPDI 663

Query: 272 YT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           +T  I IN   + G  + A   + +M   GV PD V  + LI        + +A E L +
Sbjct: 664 FTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNK 723

Query: 330 AKNQGISVGIISYS-SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               G    I +Y+  + G CS+ K   +A+ + + + ++ + P   T N ++ A+C  D
Sbjct: 724 MYASGWDPDITTYNIRIQGFCSSQKI-SRAVTMLDELIAVGVVPNTVTYNTMMNAVCT-D 781

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILL 416
            L + M + + +  +   PN +T ++LL
Sbjct: 782 MLDRAMVLTAKLLKMAFVPNVVTTNVLL 809



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 168/400 (42%), Gaps = 37/400 (9%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
            S  N LM    +S+ +  + ++L  ++E G++      + L     + G   +++++  
Sbjct: 208 FSILNTLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLR 267

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M+  G  P  H +  +I    + G +  A     +M     +PD   +N LI A    G
Sbjct: 268 GMIRDGPRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRG 327

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
               A   L  M    +   P  IT   ++ A  N G V  AR++++ I +  +     +
Sbjct: 328 RTSDALGFLHLMIK--NGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAM 385

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD---------------------EVF---- 306
           Y   ++   +  D   A  +Y++M  KG+ PD                     E+F    
Sbjct: 386 YNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWS 445

Query: 307 LSAL--------IDFAG--HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           LS+L        +  AG   AG+++ A + L++   +G+   +++++S++ A S A    
Sbjct: 446 LSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFED 505

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            A + Y+ M    L P+ ST ++++  L    +L +  ++L  M   GL  N + +++LL
Sbjct: 506 NAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLL 565

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
               +  D      L  + +  G+ P+ + F   I   S+
Sbjct: 566 DGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSK 605


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 123/530 (23%), Positives = 220/530 (41%), Gaps = 54/530 (10%)

Query: 33  NRLIRQGRISECID-LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--- 88
           N L    R+ E +D LL  M   G +      +     +C ++K ++EA      +    
Sbjct: 133 NGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLC-NEKRVEEALELLHTMAEDG 191

Query: 89  ----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P + T+N ++     ++  + A  VL+ + + G+K D   Y+T+I    K+  VD
Sbjct: 192 GGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVD 251

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               V   M++ G++P+V TY  +IDG  KA  V +A G    M  K VKPD V +N +I
Sbjct: 252 RAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTII 311

Query: 205 TACGQSGAVDRAFDVLAEM-NAEVHP--------------------------------VD 231
               ++ AVDRA  VL  M + +V P                                +D
Sbjct: 312 DGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLD 371

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           PD +T   L+      G+   AR+++  + +  IK    +Y I ++  +  G       +
Sbjct: 372 PDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDL 431

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
            D M   G+ P+    + ++        ++ A  I       G+S  +++Y  L+ A   
Sbjct: 432 LDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCK 491

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
                 A+  +  M +  + P     N+L+  LC  D+  K  E+  +M   G+ PN + 
Sbjct: 492 LGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVF 551

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLNEHV 468
           ++ ++     +  V V   L+   +  GV PN++ +  +IG   +  R  E A+ L+  V
Sbjct: 552 FNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMV 611

Query: 469 --------LSFNS-GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
                   +S+++  R   +      A  ++RE +  G  P     S +L
Sbjct: 612 SVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTIL 661



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 182/428 (42%), Gaps = 48/428 (11%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +K  +R  ++V N       +L  +C + +  E    +LR + E G   +     TL+  
Sbjct: 117 LKTGWRVNEVVIN------QLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKG 170

Query: 137 CAKSGKVDAMFEVFH--------------------------------------EMVNAGI 158
                +V+   E+ H                                       M++ G+
Sbjct: 171 LCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGV 230

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           + +V TY  +IDG  KA  V +A G    M  K VKPD V +N +I    ++ AVDRA  
Sbjct: 231 KLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEG 290

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           VL  M  +   V PD +T   ++     A  VDRA  V + +   ++K   + Y   I+ 
Sbjct: 291 VLQHMIDK--GVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHG 348

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
              TG+W+      ++M  +G+ PD V  S L+D+    GK   A +I      +GI   
Sbjct: 349 YLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPN 408

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           +  Y  L+   +         +L + M +  + P     N ++ A      + + M + S
Sbjct: 409 VTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFS 468

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-R 456
            M   GL P+ +TY IL+ A  +   V+  ++  +Q   DGV PN V+F  ++ G+C+  
Sbjct: 469 RMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVD 528

Query: 457 RYEKARTL 464
           R+EKA  L
Sbjct: 529 RWEKAEEL 536



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 126/565 (22%), Positives = 231/565 (40%), Gaps = 74/565 (13%)

Query: 25  VSEQLHSYNRLIRQGRISECID----LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +YN +I     ++ +D    +L+ M  KG+      Y+     +CK+Q   +  
Sbjct: 265 VKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAD 324

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                ++     P + T+N L+    S+ + +   + L  +   GL  D   Y+ L+   
Sbjct: 325 GVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYL 384

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K+GK     ++F+ M+  GI+PNV  YG L+ G A  G +A       +M +  + P+ 
Sbjct: 385 CKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNN 444

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
            +FN ++ A  +   +D A  + + M+   H + PD +T G L+ A    G+VD A    
Sbjct: 445 YIFNIVLCAYAKKAMIDEAMHIFSRMSQ--HGLSPDVVTYGILIDALCKLGRVDDA---- 498

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             + K+N                              M   GV P+ V  ++L+      
Sbjct: 499 --VLKFN-----------------------------QMINDGVTPNSVVFNSLVYGLCTV 527

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            + E A E+  E  +QG+   ++ ++++M    N      A  L + M+ + ++P V + 
Sbjct: 528 DRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISY 587

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N LI   C   +  +  ++L  M S+GL P+ I+Y  LL    +   ++    L  +   
Sbjct: 588 NTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLR 647

Query: 438 DGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 495
            GV P  V +  I+     +RR+ +A+ L  +++   SG+     +W      +Y   I+
Sbjct: 648 KGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIK--SGQ-----QWD-----IYTYNII 695

Query: 496 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAF 555
              +     V +     Q   + D+R  ++    +  D L +          G     A 
Sbjct: 696 LNGLCKTNCVDEAFKIFQSLCSKDLRPNII-TFTIMIDVLFK----------GGRKKDAM 744

Query: 556 SLLEEAASFGIVP-----CVSFKEI 575
            L     S G+VP     C+  K I
Sbjct: 745 DLFASIPSHGLVPNVVTYCIMMKNI 769



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 147/336 (43%), Gaps = 10/336 (2%)

Query: 125 ADCKLYTTLITTCAK---SGKVDAMFEVFHEMVNA---GIEPNVHTYGALIDGCAKAGQV 178
           A  + +  L+   A+   S   +    +F+ M  A    + P++ TY  L     + G++
Sbjct: 47  ASVRAFNHLLNVVARARCSSTSELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRI 106

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
              F A+G++     + + VV N L+     +  VD A D+L     E   + P+ ++  
Sbjct: 107 EHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCM-PNVVSCN 165

Query: 239 ALMKACANAGQVDRARE-VYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDM 295
            L+K   N  +V+ A E ++ M        TP V  Y   I+   +    + A  V   M
Sbjct: 166 TLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHM 225

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             KGV  D V  S +ID    A  V+ A  +LQ   ++G+   +++Y++++     A+  
Sbjct: 226 IDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAV 285

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +A  + +HM    +KP V T N +I  LC    + +   VL  M    + P+  TY+ L
Sbjct: 286 DRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCL 345

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +       + +  +  L +    G+ P++V +  ++
Sbjct: 346 IHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLL 381



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 121/273 (44%), Gaps = 6/273 (2%)

Query: 90  PTLSTFNMLMSV-CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + ++N L+   C + +  E A Q+L ++   GLK D   Y TL+    K+G++D  + 
Sbjct: 582 PNVISYNTLIGGHCLAGRTDEAA-QLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYC 640

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM+  G+ P   TY  ++ G     + ++A   Y  M     + D   +N ++    
Sbjct: 641 LFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLC 700

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++  VD AF +   + ++   + P+ IT   ++      G+   A +++  I  + +   
Sbjct: 701 KTNCVDEAFKIFQSLCSK--DLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPN 758

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I +    Q G  +   +++  M K G  PD V L+A+I      G++  A   L 
Sbjct: 759 VVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLS 818

Query: 329 EAKNQGISVGIISYSSLMGACSNA--KNWQKAL 359
           +      S+   + S L+   S    KN  K+L
Sbjct: 819 KIDEMNFSLEASTTSLLISLFSREEYKNHAKSL 851



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 17/208 (8%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLD--------MDKVYHARFFNVCKSQKA 76
           L SY+ L+R     GRI     L  +M RKG+          +  ++H R F+     +A
Sbjct: 619 LISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFS-----EA 673

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            +      K      + T+N++++    +   + AF++ + +    L+ +   +T +I  
Sbjct: 674 KELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDV 733

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G+     ++F  + + G+ PNV TY  ++    + G + +    +  M      PD
Sbjct: 734 LFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPD 793

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMN 224
            V+ NA+I +    G + RA   L++++
Sbjct: 794 SVMLNAIIRSLLGRGEIMRAGAYLSKID 821


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/423 (25%), Positives = 198/423 (46%), Gaps = 19/423 (4%)

Query: 70  VCKSQKAIKEAFRF-FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           VC +  A ++A +F F+    PT+ T++ ++       + +   ++L  +   G   +  
Sbjct: 17  VCDAFTAFRKAIQFGFR----PTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAV 72

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            Y TL+      G+    F +   M   G  P + T+G +I G  K G++  AF     M
Sbjct: 73  TYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEM 132

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
             +   PD  +   L+ A  + G VD A+    ++   +    PD +T   ++     AG
Sbjct: 133 VDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQV--LLIGFTPDAVTYNTMVDGLYKAG 190

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           +++ A  V +++ +     T   +TIA++  S+ G+   A   +D M + GV P+ V   
Sbjct: 191 RLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYD 250

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           ALID    AGK++ A  +L++  +Q    G+ ++SSL+     A   ++A++L + M  +
Sbjct: 251 ALIDGLCKAGKLDIALGLLRDKNSQA---GMFAFSSLLHGLCQAHRLEEAIQLLKAMPCV 307

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEV 427
              P V   N+L+  LC   ++ +  E+   MK  G   + ITY+ILL   C+ +   E 
Sbjct: 308 ---PNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEA 364

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSL 485
              +    + +G  PN+V F  +I G+C+  R  +A  + E +++     P   N++T  
Sbjct: 365 YRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISP---NRFTYA 421

Query: 486 ALM 488
            L+
Sbjct: 422 FLL 424



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 126/505 (24%), Positives = 213/505 (42%), Gaps = 34/505 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + TFN ++      +    A  V +   E G + +   Y+TLI   +K  K+D   +
Sbjct: 505 SPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQ 564

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +MV  G   N  TY  ++DG  K G++  A      MR     PD V +N LI    
Sbjct: 565 LLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFF 624

Query: 209 QSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
           +   +  A  +L EM  A  HP     +T   L      +G+ D A E+   +       
Sbjct: 625 KRQRLREAVGLLREMLEAGFHP---SVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAP 681

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEI 326
               Y+  ++   + G    A   ++ M +  V+ P  +  SALID    AG+++ A+E 
Sbjct: 682 NAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEF 741

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L+     G    ++++S L+    +A      LEL+  M     K  +   NA+I A C 
Sbjct: 742 LERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCL 801

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +      +L +MK+ G+  NT+T+ I++ A    D ++  +       ED    + + 
Sbjct: 802 KGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPED--CRDEIS 859

Query: 447 FKCIIG--MCSRRYEKARTLNEHVLSFNSGRPQIENKWT-----------SLALMVYREA 493
           +  +I   + SRR E+A  L   +++ + G P   N  T            +A  + +E 
Sbjct: 860 YNTLITSLVASRRSEQALELLRAMVA-DGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEM 918

Query: 494 IVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 549
              G  P +   + ++  L    QLP   D  E ++    +  DA+  S   SLID F +
Sbjct: 919 RSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRK-NLKPDAIVYS---SLIDAFCK 974

Query: 550 YDP--RAFSLLEEAASFGIVPCVSF 572
            D    A+ LL    S GI P ++ 
Sbjct: 975 ADKVDDAWKLLR---SSGIEPTITM 996



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 139/611 (22%), Positives = 250/611 (40%), Gaps = 101/611 (16%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERK-GLLDMDKVYHARFFNVCKSQKAIKE 79
           VS    +Y+ LI    + G++   + LL D   + G+     + H     +C++ + ++E
Sbjct: 242 VSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSSLLHG----LCQAHR-LEE 296

Query: 80  AFRFFKLVPN-PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-----------C 127
           A +  K +P  P +  FN LM+    ++  + AF++  +++E+G  AD           C
Sbjct: 297 AIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLC 356

Query: 128 KL-------------------------YTTLITTCAKSGKVDAMFEVFHEMVNA-GIEPN 161
           KL                         ++TLI     +G+V+  +EV+  MV   GI PN
Sbjct: 357 KLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPN 416

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN---------------------VKPDRVVF 200
             TY  L++G  KAG   +    +  M  +                       +P  V +
Sbjct: 417 RFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTY 476

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N L+T   +SG V  A  +L  M      + PD IT  +++       ++  A  V+K  
Sbjct: 477 NTLVTGLSKSGMVRDALGLLEFMIES--GLSPDVITFNSVLDGLCKEQRILDAHNVFKRA 534

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            +   +     Y+  I+  S+    + A  +   M + G   + V  S ++D     G++
Sbjct: 535 LERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRM 594

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E A  +L++ ++ G     ++Y++L+      +  ++A+ L   M      P+V T   L
Sbjct: 595 EDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTL 654

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ-AKEDG 439
              LC   +  + +E+L  M + G  PN ITYS ++    +   V   L    + A+++ 
Sbjct: 655 CHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEV 714

Query: 440 VIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 498
           V P+++ +  +I G+C                  +GR  I+  +  L  M     I AG 
Sbjct: 715 VAPHVIAYSALIDGLC-----------------KAGR--IDEAYEFLERM-----IRAGR 750

Query: 499 IPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGEYDPRAF 555
           IP V   S ++  L      D    L   +   G  AD    + + +     GE+   A+
Sbjct: 751 IPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSA-AY 809

Query: 556 SLLEEAASFGI 566
           +LLEE  + GI
Sbjct: 810 ALLEEMKTHGI 820



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 176/392 (44%), Gaps = 23/392 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L R   + +   LLE+M  +G    + V +    N    Q   KEAF    ++  N   P
Sbjct: 46  LCRDNEVDKGCKLLEEMAGRGCAP-NAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPP 104

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L TF +++       + E AF+V+  + + G   D +++T L+    + G+VD  +  F
Sbjct: 105 ELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFF 164

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +++  G  P+  TY  ++DG  KAG++  A     ++      P    F   +    ++
Sbjct: 165 QQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKA 224

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +  A++    M      V P+ +T  AL+     AG++D A     ++   N +    
Sbjct: 225 GNLTGAYEFFDSMPQT--GVSPNTVTYDALIDGLCKAGKLDIA---LGLLRDKNSQAGMF 279

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            ++  ++   Q    E A  +   M     +P+ V  ++L++    A +V+ AFE+    
Sbjct: 280 AFSSLLHGLCQAHRLEEAIQLLKAMP---CVPNVVCFNSLMNGLCQARRVDEAFELFDVM 336

Query: 331 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALC 385
           K  G S  +I+Y+ L+ G C      ++  E Y H++ ++      P V T + LI  LC
Sbjct: 337 KESGCSADVITYNILLKGLC----KLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLC 392

Query: 386 DGDQLPKTMEVLSDMKSL-GLCPNTITYSILL 416
           +  ++ +  EV   M ++ G+ PN  TY+ LL
Sbjct: 393 NAGRVNQAWEVYERMVAVEGISPNRFTYAFLL 424



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 112/480 (23%), Positives = 193/480 (40%), Gaps = 69/480 (14%)

Query: 33  NRLIRQGRISECIDLLEDMERKG------------------------------LLDM--- 59
           N L+ QGR  E   LLE M   G                              ++D    
Sbjct: 79  NALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFV 138

Query: 60  -DKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQV 114
            D   H    +       + EA+ FF+ V      P   T+N ++     +   E A  V
Sbjct: 139 PDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMV 198

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
           L+L+ E+        +T  +   +K+G +   +E F  M   G+ PN  TY ALIDG  K
Sbjct: 199 LQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCK 258

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
           AG++  A    G++R KN +     F++L+    Q+  ++ A  +L  M     P  P+ 
Sbjct: 259 AGKLDIAL---GLLRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAM-----PCVPNV 310

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +   +LM     A +VD A E++ ++ +         Y I +    +      A    + 
Sbjct: 311 VCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVEL 370

Query: 295 MTK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNA 352
           M + +G  P+ V  S LI    +AG+V  A+E+ +     +GIS    +Y+ L+     A
Sbjct: 371 MRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKA 430

Query: 353 KNWQKALELYEHMKSIKL---------------------KPTVSTMNALITALCDGDQLP 391
            + ++  + +E M   +                      +PT+ T N L+T L     + 
Sbjct: 431 GDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVR 490

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             + +L  M   GL P+ IT++ +L    ++  +     +  +A E G  PN+V +  +I
Sbjct: 491 DALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLI 550



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 172/372 (46%), Gaps = 13/372 (3%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN---- 89
            L + GR++E +   E M R  ++    + Y A    +CK+ + I EA+ F + +      
Sbjct: 693  LCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGR-IDEAYEFLERMIRAGRI 751

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P + TF++L++    +   +   ++   + E G KAD   Y  +I      G+  A + +
Sbjct: 752  PDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYAL 811

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              EM   GI  N  T+G +I       ++ +A   +  +       D + +N LIT+   
Sbjct: 812  LEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDC--RDEISYNTLITSLVA 869

Query: 210  SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            S   ++A ++L  M A+     PD      +M     AG  + A ++ + +         
Sbjct: 870  SRRSEQALELLRAMVADGG--SPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDL 927

Query: 270  EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
              YTI I+  S+      AC  +++M +K + PD +  S+LID    A KV+ A+++L  
Sbjct: 928  RTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLL-- 985

Query: 330  AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             ++ GI   I  YS+++ +    +   KALE+   MKS   +P +    +L TA     +
Sbjct: 986  -RSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGR 1044

Query: 390  LPKTMEVLSDMK 401
            + + +++++D++
Sbjct: 1045 VDEAVKLVNDLQ 1056



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 175/431 (40%), Gaps = 50/431 (11%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            +YN LI    ++ R+ E + LL +M   G       Y      +C+S +   EA      
Sbjct: 615  TYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGR-FDEAVEILDY 673

Query: 87   VPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P   T++ ++  +C + + +E      ++ ++  +      Y+ LI    K+G
Sbjct: 674  MAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAG 733

Query: 142  KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            ++D  +E    M+ AG  P+V T+  LI+G   AG++      +  M  +  K D   +N
Sbjct: 734  RIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYN 793

Query: 202  ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMI 260
            A+I A    G    A+ +L EM  + H +  + +T G ++KA C N    DR  E     
Sbjct: 794  AMINAYCLKGEFSAAYALLEEM--KTHGIAKNTVTHGIVIKALCGN----DRIDEAVSYF 847

Query: 261  HKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
            H        E+ Y   I     +   E A  +   M   G  PD      ++D    AG 
Sbjct: 848  HSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGS 907

Query: 320  VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
             E A ++LQE +++G S  + +Y+ ++   S AK    A + +E M    LKP     ++
Sbjct: 908  PEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSS 967

Query: 380  LITALCDGDQLP--------------------------------KTMEVLSDMKSLGLCP 407
            LI A C  D++                                 K +EV+ +MKS    P
Sbjct: 968  LIDAFCKADKVDDAWKLLRSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEP 1027

Query: 408  NTITYSILLVA 418
                ++ L  A
Sbjct: 1028 GIHIWTSLATA 1038



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 123/253 (48%), Gaps = 16/253 (6%)

Query: 29   LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
            +++YN +I     +G  S    LLE+M+  G+   + V H            I EA  +F
Sbjct: 789  IYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAK-NTVTHGIVIKALCGNDRIDEAVSYF 847

Query: 85   KLVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
              +P       ++N L++   +S+ SE A ++LR +   G   D   Y T++    K+G 
Sbjct: 848  HSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGS 907

Query: 143  VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
             +   ++  EM + G  P++ TY  +I G +KA Q+  A   +  M  KN+KPD +V+++
Sbjct: 908  PEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSS 967

Query: 203  LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM--KACANAGQVDRAREVYKMI 260
            LI A  ++  VD A+ +L   ++ + P     IT+ + M    C N G  D+A EV + +
Sbjct: 968  LIDAFCKADKVDDAWKLL--RSSGIEPT----ITMYSTMVDSLCKNRG-TDKALEVIREM 1020

Query: 261  HKYNIKGTPEVYT 273
               N +    ++T
Sbjct: 1021 KSKNCEPGIHIWT 1033



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/213 (18%), Positives = 88/213 (41%)

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T   L+     AG+V  A   ++   ++  + T   Y+  I+   +  + +  C + ++
Sbjct: 2   VTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEE 61

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M  +G  P+ V  + L++     G+ + AF +L+     G    +I++  ++        
Sbjct: 62  MAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGE 121

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            + A  + + M      P V     L+ ALC+  ++ +       +  +G  P+ +TY+ 
Sbjct: 122 IEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNT 181

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           ++    +   +E   M+L    E    P +  F
Sbjct: 182 MVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTF 214



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           +++Y+ L+     A     A   +        +PTV T + +I  LC  +++ K  ++L 
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +M   G  PN +TY+ L+ A   +   +    LL +   +G  P L+ F  II G+C
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLC 117


>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 165/368 (44%), Gaps = 18/368 (4%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ML++     KD   AF V   V + GLK D  LY  +I      G +D       
Sbjct: 499 MKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVK 558

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM      P   T+  +I G A++G + +A   + +MR     P    FNALI    +  
Sbjct: 559 EMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKC 618

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +++A ++L EM+  +  + P+  T   +M   A+ G   +A E +  +    ++     
Sbjct: 619 QMEKAVEILDEMS--LAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYT 676

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M+ + +  +    + LID     G V  A E++Q+ K
Sbjct: 677 YEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMK 736

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I +Y+S + AC  A + Q+A +  + M+ + +KP + T   LI          
Sbjct: 737 QEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPE 796

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           K ++   +MKS GL P+   Y  L+ +            LLS+A     +    ++  ++
Sbjct: 797 KALKCFQEMKSAGLKPDKAVYHCLMTS------------LLSRAS----VAEEYIYSGVV 840

Query: 452 GMCSRRYE 459
           G+C    E
Sbjct: 841 GICREMIE 848



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 160/343 (46%), Gaps = 2/343 (0%)

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           ++R ++E G+ A   +Y T++      G  +    VF  +   G  P+V +YG LI+   
Sbjct: 416 LVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYI 475

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           K G+V+KA     +M    +K +   ++ LI    +      AF V  ++  +   + PD
Sbjct: 476 KIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKD--GLKPD 533

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +    +++A    G +DRA    K + K   + T   +   I+  +++GD   A  ++D
Sbjct: 534 VVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFD 593

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M   G IP     +ALI       ++E A EIL E    GIS    +Y+++M   ++  
Sbjct: 594 MMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLG 653

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           +  KA E +  +K+  L+  V T  AL+ A C   ++   + V  +M S  +  NT  Y+
Sbjct: 654 DTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYN 713

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           IL+    R+ DV     L+ Q K++GV P++  +   I  C +
Sbjct: 714 ILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCK 756



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 178/406 (43%), Gaps = 33/406 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+   F ++++  A   D   A      ++  G++    +YT+LI   A    +
Sbjct: 281 FERIKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDM 340

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +       +M   GIE ++ TY  L+ G AK      A   +   + ++   + +++  +
Sbjct: 341 EEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNI 400

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  Q+  + +A  ++ EM  E    P+D                              
Sbjct: 401 IYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGF 460

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  I+ G L+      G+V +A EV KM+    IK   + Y++ IN   +  DW  A +
Sbjct: 461 TPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFA 520

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++D+ K G+ PD V  + +I      G ++ A   ++E + +       ++  ++   +
Sbjct: 521 VFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFA 580

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            + + ++ALE+++ M+     PTV T NALI  L +  Q+ K +E+L +M   G+ PN  
Sbjct: 581 RSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEH 640

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           TY+ ++       D        ++ K +G+  ++  ++ ++  C +
Sbjct: 641 TYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCK 686



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 5/239 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNV---CKSQKAIKEAFRFFKLVPNPTLS 93
           R G +   +++ + M   G +     ++A    +   C+ +KA++          +P   
Sbjct: 581 RSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEH 640

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+  +M   AS  D+  AF+    ++  GL+ D   Y  L+  C KSG++ +   V  EM
Sbjct: 641 TYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREM 700

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            +  I  N   Y  LIDG A+ G V +A      M+ + V+PD   + + I AC ++G +
Sbjct: 701 SSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDM 760

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
            RA   + EM  EV  V P+  T   L+   A A   ++A + ++ +    +K    VY
Sbjct: 761 QRATKTIQEM--EVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVY 817



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 39/165 (23%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    R+G + E  +L++ M+++G+                               
Sbjct: 712 YNILIDGWARRGDVWEAAELMQQMKQEGV------------------------------- 740

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + T+   ++ C  + D + A + ++ ++  G+K + K YTTLI   A++   +   
Sbjct: 741 -QPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKAL 799

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF---GAYGIMR 189
           + F EM +AG++P+   Y  L+        VA+ +   G  GI R
Sbjct: 800 KCFQEMKSAGLKPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICR 844


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 196/448 (43%), Gaps = 18/448 (4%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK----- 75
           V+   ++Y  LIR    +GR+++ + LL+DM R+G       Y      +CK+       
Sbjct: 138 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAM 197

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+ +  R     PN  + T+N++++        + A  +L  +   G + D   YTTL+ 
Sbjct: 198 AVLDEMRAKGCTPN--IVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLK 255

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
               S + D + E+F EM+     PN  T+  LI    + G V +A      M       
Sbjct: 256 GLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECAT 315

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           +  + N +I +  + G VD AF  L  M +  +  +PD I+   ++K    A + + A+E
Sbjct: 316 NTTLCNIVINSICKQGRVDDAFKFLNNMGS--YGCNPDTISYTTVLKGLCRAERWNDAKE 373

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + K + + N       +   I    Q G  E A  + + M + G     V  +AL++   
Sbjct: 374 LLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFC 433

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G +++A E+    ++       I+Y++L+    NA+    A EL   M      P V 
Sbjct: 434 VQGHIDSALELF---RSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVV 490

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N L+   C    L + +E++  M   G  PN ITY+ L     +    E  L LL   
Sbjct: 491 TFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGL 550

Query: 436 KEDGVIPNLVMFKCIIGMCSR--RYEKA 461
              GV P+++ F  IIG+ S+  R E+A
Sbjct: 551 VSKGVSPDVITFSSIIGILSKEDRVEEA 578



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 191/445 (42%), Gaps = 39/445 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+GR+ +  DLL  +   G       Y      +C S++       F +++     
Sbjct: 220 NGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCM 279

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TF+ML+         E A QVL+ + E     +  L   +I +  K G+VD  F+ 
Sbjct: 280 PNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKF 339

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M + G  P+  +Y  ++ G  +A +   A      M   N  P+ V FN  I    Q
Sbjct: 340 LNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQ 399

Query: 210 SGAVDRAFDVLAEM------------NAEVH------------------PVDPDHITIGA 239
            G +++A  ++ +M            NA V+                  P  P+ IT   
Sbjct: 400 KGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMPCKPNTITYTT 459

Query: 240 LMKACANAGQVDRARE-VYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMT 296
           L+    NA ++D A E V +M+H+      P V T  + +N   Q G  + A  + + M 
Sbjct: 460 LLTGLCNAERLDAAAELVAEMLHR---DCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMM 516

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           + G  P+ +  + L D        E A E+L    ++G+S  +I++SS++G  S     +
Sbjct: 517 EHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVE 576

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A++++   + I ++P     N ++  LC   ++   ++ L+ M S G  PN  TY IL+
Sbjct: 577 EAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILI 636

Query: 417 VACERKDDVEVGLMLLSQAKEDGVI 441
               R+  ++    LLS     GV+
Sbjct: 637 EGLAREGLLKEAQDLLSMLCSRGVV 661



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 161/368 (43%), Gaps = 8/368 (2%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P+  L T  ++ ++C   + S+ A +VLR  + +G   D   Y TL+    + G +DA  
Sbjct: 73  PDVYLCT-KLIRNLCRRGRTSDAA-RVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAAR 130

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +   M    + P+ +TY  LI      G+VA A      M  +  +P+ V +  L+ A 
Sbjct: 131 RLIGSM---PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAM 187

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++   ++A  VL EM A+     P+ +T   ++      G+VD AR++   +  Y  + 
Sbjct: 188 CKNSGFEQAMAVLDEMRAK--GCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQP 245

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  +     +  W+    ++ +M +K  +P+EV    LI F    G VE A ++L
Sbjct: 246 DTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVL 305

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           Q+      +      + ++ +         A +   +M S    P   +   ++  LC  
Sbjct: 306 QQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRA 365

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           ++     E+L +M      PN +T++  +    +K  +E  +ML+ Q +E G    +V +
Sbjct: 366 ERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTY 425

Query: 448 KCII-GMC 454
             ++ G C
Sbjct: 426 NALVNGFC 433



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 165/389 (42%), Gaps = 12/389 (3%)

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G  P+V+    LI    + G+ + A              D   +N L+    + G +D A
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 129

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             ++  M     PV PD  T   L++   + G+V  A  +   + +   +     YT+ +
Sbjct: 130 RRLIGSM-----PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLL 184

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
               +   +E A +V D+M  KG  P+ V  + +I+     G+V+ A ++L    + G  
Sbjct: 185 EAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQ 244

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
              +SY++L+     +K W    EL+  M      P   T + LI   C G  + + ++V
Sbjct: 245 PDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQV 304

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC- 454
           L  M       NT   +I++ +  ++  V+     L+     G  P+ + +  ++ G+C 
Sbjct: 305 LQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCR 364

Query: 455 SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL-- 512
           + R+  A+ L + ++  N   P  E  + +   ++ ++ ++   I  +E + +  GC   
Sbjct: 365 AERWNDAKELLKEMVRNNC--PPNEVTFNTFICILCQKGLIEQAIMLIEQMQE-HGCTVG 421

Query: 513 QLPYNADIRERLVENLGVSADALKRSNLC 541
            + YNA +    V+    SA  L RS  C
Sbjct: 422 VVTYNALVNGFCVQGHIDSALELFRSMPC 450


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 198/430 (46%), Gaps = 13/430 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-L 86
           YN LI    R G     I++++DM R  +      Y+    N C +    K+A    K +
Sbjct: 191 YNSLINAHARAGLWRWAINIMDDMLRAAIPPSRATYN-NVVNACGAAGNWKKALELCKKM 249

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P L T N+++S   +      A     +++ A +  D      +I    K G+ 
Sbjct: 250 IRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQH 309

Query: 144 DAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
               ++ + M    ++  P+V TY ++I      GQV      + +M ++ VKP+ V +N
Sbjct: 310 GDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYN 369

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           AL+ A    G    AF +   +  + + + PD ++   L+ A   + Q ++AREV+  + 
Sbjct: 370 ALLGAYASHGMHTEAFGIFKLL--KQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMR 427

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K + K     Y   I+     G ++ A S+  +M K G+ PD V +S L+   G   +  
Sbjct: 428 KNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTT 487

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
               +L+ AK +GI + I++Y+S +G+  +  +++KAL+LY  M +  + P   T N LI
Sbjct: 488 KIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILI 547

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           + LC   +  ++++   DM  L +      YS L+ +  ++D +          K  G  
Sbjct: 548 SGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCF 607

Query: 442 PNLVMFKCII 451
           P+++ +  +I
Sbjct: 608 PDVLTYTAMI 617



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 14/386 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + M++ + A     + A  +   +QE   K D  +Y +LI   A++G       +  +M+
Sbjct: 156 YGMMIQLHARHNQVDQARGLFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDML 215

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            A I P+  TY  +++ C  AG   KA      M    V PD V  N +++A        
Sbjct: 216 RAAIPPSRATYNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYT 275

Query: 215 RA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           +A   F+++   N     + PD  T+  ++      GQ   A ++   + +  ++ +P+V
Sbjct: 276 KATGYFEMMKGAN-----IAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDV 330

Query: 272 --YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQ 328
             YT  I+     G  E   +V+D M  +GV P+ V  +AL+  +A H    E AF I +
Sbjct: 331 VTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTE-AFGIFK 389

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             K  G+   ++SY++L+ A   +   +KA E++  M+    KP   + NALI A     
Sbjct: 390 LLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAG 449

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              + + +L +M+  G+ P+ ++ S LL AC R         +L  AK  G+  N+V + 
Sbjct: 450 MFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYN 509

Query: 449 CIIG--MCSRRYEKARTLNEHVLSFN 472
             IG  +    YEKA  L   +++ N
Sbjct: 510 SGIGSYLSFGDYEKALKLYATMMASN 535



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 169/361 (46%), Gaps = 19/361 (5%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  +I   A+  +VD    +F EM     +P+   Y +LI+  A+AG    A      M
Sbjct: 155 IYGMMIQLHARHNQVDQARGLFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDM 214

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               + P R  +N ++ ACG +G   +A ++  +M    + V PD +T   ++ A  N  
Sbjct: 215 LRAAIPPSRATYNNVVNACGAAGNWKKALELCKKMIR--NGVGPDLVTHNIVLSAFKNGF 272

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGV--IPDE 304
           Q  +A   ++M+   NI   P+ +T  I I+C  + G    A  + + M +K V   PD 
Sbjct: 273 QYTKATGYFEMMKGANI--APDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDV 330

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V  +++I      G+VE    +      +G+   I+SY++L+GA ++     +A  +++ 
Sbjct: 331 VTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKL 390

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           +K   L+P V +   L+ A     Q  K  EV ++M+     PN ++Y+ L+ A      
Sbjct: 391 LKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGM 450

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----------RYEKARTLNEHVLSFNS 473
            +  + LL + ++DG+ P++V    ++  C R              K R +  +++++NS
Sbjct: 451 FKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNS 510

Query: 474 G 474
           G
Sbjct: 511 G 511



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 122/537 (22%), Positives = 212/537 (39%), Gaps = 94/537 (17%)

Query: 6   KNMLQFPYPNG-----KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERK------ 54
           KN  Q+    G     K AN A D        + L++ G+  + +DLL  M  K      
Sbjct: 269 KNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSP 328

Query: 55  GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQ 113
            ++    + H+ +  VC   +  K  F         P + ++N L+   AS      AF 
Sbjct: 329 DVVTYTSIIHSYY--VCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFG 386

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           + +L+++ GL+ D   YTTL+    +S + +   EVF+EM     +PN  +Y ALID   
Sbjct: 387 IFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYG 446

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS----------------------- 210
            AG   +A      M    + PD V  + L+ ACG+                        
Sbjct: 447 SAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIV 506

Query: 211 ------------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ--------- 249
                       G  ++A  + A M A    V+PD +T   L+      G+         
Sbjct: 507 AYNSGIGSYLSFGDYEKALKLYATMMAS--NVNPDAVTYNILISGLCKLGKYAESLKFFE 564

Query: 250 ------VDRAREVYK-MIHKY--------------NIKGT---PEV--YTIAINCCSQTG 283
                 +   +EVY  +I  Y              N+K +   P+V  YT  I   +  G
Sbjct: 565 DMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHG 624

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
            W     ++ +M    ++PD +  S+L++      +     ++++   +Q I +   +Y 
Sbjct: 625 SWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQKAYF 684

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS- 402
            ++ +CS  ++W+ A E+ EH+ S     +V  +N L+  L    +    M++   M S 
Sbjct: 685 EIIASCSMLRDWKTASEIIEHLDSSLPSISVGKLNYLLNFLGKCGKTESMMKLFYKMVSS 744

Query: 403 ---LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
              +GL    +    LL   + +  VEV    L   ++ GV P L M++ ++    R
Sbjct: 745 CSTVGLSTYKVLLRNLLAVGKWRKYVEV----LQWMEDAGVRPTLYMYQNVLPYIWR 797



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 170/395 (43%), Gaps = 13/395 (3%)

Query: 89  NPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           +P + T+  ++    VC   ++ +  F ++  V E G+K +   Y  L+   A  G    
Sbjct: 327 SPDVVTYTSIIHSYYVCGQVENCKAVFDMM--VAE-GVKPNIVSYNALLGAYASHGMHTE 383

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            F +F  +   G+ P+V +Y  L++   ++ Q  KA   +  MR  + KP++V +NALI 
Sbjct: 384 AFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALID 443

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           A G +G    A  +L EM  +  P  PD ++I  L+ AC    Q  +   V +      I
Sbjct: 444 AYGSAGMFKEAISLLHEMEKDGIP--PDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGI 501

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           +     Y   I      GD+E A  +Y  M    V PD V  + LI      GK   + +
Sbjct: 502 ELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLK 561

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
             ++  +  I +    YSSL+ +        +A   + +MK+    P V T  A+I A  
Sbjct: 562 FFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYT 621

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           D        ++  +M+   + P+ I  S L+ A  + +     L L+    +  +  N  
Sbjct: 622 DHGSWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQK 681

Query: 446 MFKCIIGMCS--RRYEKARTLNEHVLSFNSGRPQI 478
            +  II  CS  R ++ A  + EH+   +S  P I
Sbjct: 682 AYFEIIASCSMLRDWKTASEIIEHL---DSSLPSI 713



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 123/258 (47%), Gaps = 3/258 (1%)

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           R  F  LI     SG+++ A  V   M  + +    + I  G +++  A   QVD+AR +
Sbjct: 117 RRNFPLLIREMAFSGSLEHAVYVFCWMKNQENYCARNDI-YGMMIQLHARHNQVDQARGL 175

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  + ++  K   ++Y   IN  ++ G W +A ++ DDM +  + P     + +++  G 
Sbjct: 176 FFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDMLRAAIPPSRATYNNVVNACGA 235

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           AG  + A E+ ++    G+   +++++ ++ A  N   + KA   +E MK   + P   T
Sbjct: 236 AGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTFT 295

Query: 377 MNALITALCDGDQLPKTMEVLSDM--KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           +N +I  L    Q    +++L+ M  K +   P+ +TY+ ++ +      VE    +   
Sbjct: 296 LNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDM 355

Query: 435 AKEDGVIPNLVMFKCIIG 452
              +GV PN+V +  ++G
Sbjct: 356 MVAEGVKPNIVSYNALLG 373


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 168/378 (44%), Gaps = 4/378 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T ++L++  +  +  + AF VL  + + GL+     +TTLI    K GK     E
Sbjct: 130 SPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAME 189

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F +MV  G  P+V+TY  +I+G  K G+ A A G    M     +P+ V ++ +I +  
Sbjct: 190 LFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHR 249

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   V+ A D+ + M  +V  + PD  T  +L++   N  Q   A  +   +   NI   
Sbjct: 250 KDRRVNEALDIFSYM--KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPD 307

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              + + ++   + G    A  V   MT+ GV PD V  S+L+       +V  A ++  
Sbjct: 308 IVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFD 367

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G    + SY+ L+      K   +A +L+  M    L P   + N LI  LC   
Sbjct: 368 AMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLG 427

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L +   +  +M + G  PN  TYSILL    ++        L    +     PNLVM+ 
Sbjct: 428 SLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYN 487

Query: 449 CII-GMC-SRRYEKARTL 464
            +I  MC S     AR L
Sbjct: 488 ILIDAMCKSGNLRDARKL 505



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 165/362 (45%), Gaps = 2/362 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  +++      ++  A  +L+ ++EAG + +   Y+T+I +  K  +V+   ++
Sbjct: 201 PDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDI 260

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M   GI P++ TY +LI G     Q  +A      MRS N+ PD V FN L+    +
Sbjct: 261 FSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICK 320

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V  A  VL  M      V+PD +T  +LM   +   +V  AR+++  +     K   
Sbjct: 321 EGKVSEAQGVLKTMTE--MGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDV 378

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN   +    + A  ++++M  +G+ P+ V  + LI      G +  A  + + 
Sbjct: 379 FSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKN 438

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G    + +YS L+        + KA  L+  M+S   KP +   N LI A+C    
Sbjct: 439 MHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGN 498

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L    ++ S++   GL PN   Y+ ++    ++  ++  L      +EDG  P+ + +  
Sbjct: 499 LRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNV 558

Query: 450 II 451
           II
Sbjct: 559 II 560



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 174/376 (46%), Gaps = 10/376 (2%)

Query: 88  PNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P P +  F  L+S +    +  +    + + ++ AGL  +    + LI   +   +VD  
Sbjct: 93  PLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSILINCFSHLQRVDLA 152

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           F V  +++  G++P + T+  LI+   K G+ A+A   +  M ++  +PD   +  +I  
Sbjct: 153 FSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIING 212

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G    A  +L +M  E     P+ +T   ++ +     +V+ A +++  +    +K
Sbjct: 213 LCKIGETAAAAGLLKKM--EEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYM---KVK 267

Query: 267 G-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G +P+++T    I        W+ A ++ ++M    ++PD V  + L+D     GKV  A
Sbjct: 268 GISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEA 327

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             +L+     G+   +++YSSLM   S      +A +L++ M +   KP V + N LI  
Sbjct: 328 QGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILING 387

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
            C   ++ +  ++ ++M   GL PN ++Y+ L+    +   +     L      +G +PN
Sbjct: 388 YCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPN 447

Query: 444 LVMFKCII-GMCSRRY 458
           L  +  ++ G C + Y
Sbjct: 448 LFTYSILLDGFCKQGY 463



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 200/443 (45%), Gaps = 36/443 (8%)

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEMNAEVH 228
           D C+    +  A  ++  M  +   P  + F  L++A  + G   D    +  +M  E+ 
Sbjct: 71  DACS-FRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQM--ELA 127

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + P+  T+  L+   ++  +VD A  V   I K  ++ T   +T  IN   + G +  A
Sbjct: 128 GLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQA 187

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             ++DDM  +G  PD    + +I+     G+  AA  +L++ +  G    +++YS+++ +
Sbjct: 188 MELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDS 247

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
               +   +AL+++ +MK   + P + T N+LI  LC+  Q  +   +L++M+SL + P+
Sbjct: 248 HRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPD 307

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNE 466
            +T+++L+    ++  V     +L    E GV P++V +  ++   S R E  +AR L +
Sbjct: 308 IVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFD 367

Query: 467 ---------HVLSFN---SGRPQIENKWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQ 513
                     V S+N   +G  ++  K    A  ++ E I  G  P  V   + + G  Q
Sbjct: 368 AMITKGCKPDVFSYNILINGYCKV--KRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQ 425

Query: 514 LPYNADIRE--RLVENLGVSADALKRSNLCSLIDGFGE--YDPRAFSLLEEAASFGIVPC 569
           L     +RE   L +N+  + +         L+DGF +  Y  +AF L     S    P 
Sbjct: 426 L---GSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPN 482

Query: 570 VSFKEIPV--------VVDARKL 584
           +    I +        + DARKL
Sbjct: 483 LVMYNILIDAMCKSGNLRDARKL 505


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 197/448 (43%), Gaps = 18/448 (4%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK----- 75
           V+   ++Y  +IR    +GR+ E + LL+DM  +G       Y      VCKS       
Sbjct: 172 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 231

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            + +  R     PN  + T+N++++        + A + L  +   G + D   YTT++ 
Sbjct: 232 EVLDEMRAKGCTPN--IVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLK 289

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
               + + + + E+F EM+     PN  T+  L+    + G V +A      M       
Sbjct: 290 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAA 349

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           +  + N +I    + G VD AF  L  M +  +   PD I+   ++K    A + + A+E
Sbjct: 350 NTTLCNIVINTICKQGRVDDAFQFLNNMGS--YGCSPDTISYTTVLKGLCRAERWEDAKE 407

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + K + + N       +   I    Q G  E A  + + M++ G   + V  +AL++   
Sbjct: 408 LLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC 467

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+V++A E+      +      I+Y++L+    NA+    A EL   M      P V 
Sbjct: 468 VQGRVDSALELFYSMPCKP---NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVV 524

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N L++  C    + + +E++  M   G  PN ITY+ LL    +  + E  L LL   
Sbjct: 525 TFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGL 584

Query: 436 KEDGVIPNLVMFKCIIGMCSR--RYEKA 461
             +GV P++V +  IIG+ SR  R E+A
Sbjct: 585 VSNGVSPDIVTYSSIIGVLSREDRVEEA 612



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 194/424 (45%), Gaps = 12/424 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+GR+ +  + L  +   G       Y      +C +++       F +++     
Sbjct: 254 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 313

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TF+ML+         E A QVL  +   G  A+  L   +I T  K G+VD  F+ 
Sbjct: 314 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 373

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M + G  P+  +Y  ++ G  +A +   A      M  KN  P+ V FN  I    Q
Sbjct: 374 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 433

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +++A  ++ +M+   H  + + +T  AL+      G+VD A E++     Y++   P
Sbjct: 434 KGLIEQATMLIEQMSE--HGCEVNIVTYNALVNGFCVQGRVDSALELF-----YSMPCKP 486

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  +         + A  +  +M +K   P+ V  + L+ F    G ++ A E++
Sbjct: 487 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 546

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++    G +  +I+Y++L+   +   N ++ALEL   + S  + P + T +++I  L   
Sbjct: 547 EQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRE 606

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           D++ + +++   ++ LG+ P  + Y+ +L+A  ++ + +  +   +    +G +PN + +
Sbjct: 607 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 666

Query: 448 KCII 451
             +I
Sbjct: 667 ITLI 670



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 155/359 (43%), Gaps = 7/359 (1%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           ++ ++C   + S+ A +VLR  + +G   D   Y TL+    + G++DA   +   M   
Sbjct: 115 LIRNLCRRGRTSDAA-RVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM--- 170

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
            + P+ +TY  +I G    G+V +A      M  +  +P  V +  L+ A  +S    +A
Sbjct: 171 PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQA 230

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
            +VL EM A+     P+ +T   ++      G+VD ARE    +  Y  +     YT  +
Sbjct: 231 MEVLDEMRAK--GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVL 288

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
                   WE    ++ +M +K  +P+EV    L+ F    G VE A ++L++    G +
Sbjct: 289 KGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCA 348

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
                 + ++           A +   +M S    P   +   ++  LC  ++     E+
Sbjct: 349 ANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKEL 408

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           L +M      PN +T++  +    +K  +E   ML+ Q  E G   N+V +  ++ G C
Sbjct: 409 LKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC 467


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 197/448 (43%), Gaps = 18/448 (4%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK----- 75
           V+   ++Y  +IR    +GR+ E + LL+DM  +G       Y      VCKS       
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 200

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            + +  R     PN  + T+N++++        + A + L  +   G + D   YTT++ 
Sbjct: 201 EVLDEMRAKGCTPN--IVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLK 258

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
               + + + + E+F EM+     PN  T+  L+    + G V +A      M       
Sbjct: 259 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAA 318

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           +  + N +I    + G VD AF  L  M +  +   PD I+   ++K    A + + A+E
Sbjct: 319 NTTLCNIVINTICKQGRVDDAFQFLNNMGS--YGCSPDTISYTTVLKGLCRAERWEDAKE 376

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + K + + N       +   I    Q G  E A  + + M++ G   + V  +AL++   
Sbjct: 377 LLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC 436

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+V++A E+     +       I+Y++L+    NA+    A EL   M      P V 
Sbjct: 437 VQGRVDSALELFY---SMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVV 493

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N L++  C    + + +E++  M   G  PN ITY+ LL    +  + E  L LL   
Sbjct: 494 TFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGL 553

Query: 436 KEDGVIPNLVMFKCIIGMCSR--RYEKA 461
             +GV P++V +  IIG+ SR  R E+A
Sbjct: 554 VSNGVSPDIVTYSSIIGVLSREDRVEEA 581



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 194/424 (45%), Gaps = 12/424 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+GR+ +  + L  +   G       Y      +C +++       F +++     
Sbjct: 223 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 282

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TF+ML+         E A QVL  +   G  A+  L   +I T  K G+VD  F+ 
Sbjct: 283 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 342

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M + G  P+  +Y  ++ G  +A +   A      M  KN  P+ V FN  I    Q
Sbjct: 343 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 402

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +++A  ++ +M+   H  + + +T  AL+      G+VD A E++     Y++   P
Sbjct: 403 KGLIEQATMLIEQMSE--HGCEVNIVTYNALVNGFCVQGRVDSALELF-----YSMPCKP 455

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  +         + A  +  +M +K   P+ V  + L+ F    G ++ A E++
Sbjct: 456 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 515

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++    G +  +I+Y++L+   +   N ++ALEL   + S  + P + T +++I  L   
Sbjct: 516 EQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRE 575

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           D++ + +++   ++ LG+ P  + Y+ +L+A  ++ + +  +   +    +G +PN + +
Sbjct: 576 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 448 KCII 451
             +I
Sbjct: 636 ITLI 639



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 159/368 (43%), Gaps = 8/368 (2%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P+  L T  ++ ++C   + S+ A +VLR  + +G   D   Y TL+    + G++DA  
Sbjct: 76  PDVYLCT-KLIRNLCRRGRTSDAA-RVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAAR 133

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +   M    + P+ +TY  +I G    G+V +A      M  +  +P  V +  L+ A 
Sbjct: 134 RLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAV 190

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +S    +A +VL EM A+     P+ +T   ++      G+VD ARE    +  Y  + 
Sbjct: 191 CKSTGFGQAMEVLDEMRAK--GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQP 248

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  +        WE    ++ +M +K  +P+EV    L+ F    G VE A ++L
Sbjct: 249 DTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVL 308

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++    G +      + ++           A +   +M S    P   +   ++  LC  
Sbjct: 309 EQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRA 368

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           ++     E+L +M      PN +T++  +    +K  +E   ML+ Q  E G   N+V +
Sbjct: 369 ERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTY 428

Query: 448 KCII-GMC 454
             ++ G C
Sbjct: 429 NALVNGFC 436


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 180/387 (46%), Gaps = 15/387 (3%)

Query: 21  YAHDVSEQLHSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           Y  DV   + + N     L+++GR      +  DM  +G    + V +    + C  Q  
Sbjct: 150 YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGA-SPNVVTYGTLIDGCCRQGD 208

Query: 77  IKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
             +AFR F      K+ P   + T  ++  +C  S+ SE A  + R ++ +G+  +   Y
Sbjct: 209 FLKAFRLFDEMIEKKIFPTVVIYTI-LIRGLCGESRISE-AESMFRTMRNSGMLPNLYTY 266

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            T++    K   V    E++ EM+  G+ PNV T+G LIDG  K  ++  A      M S
Sbjct: 267 NTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMAS 326

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
             V P+  V+N LI    ++G +  A  + +E+  E H + PD  T   L+K      ++
Sbjct: 327 FGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEI--EKHEILPDVFTYSILIKGLCGVDRM 384

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           + A  + + + K         Y   I+   + G+ E A  V   MT+KG+ P+ +  S L
Sbjct: 385 EEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTL 444

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID    AGK+EAA  +  E   +G+   +++Y++L+       N ++A  L++ M+   L
Sbjct: 445 IDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGL 504

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVL 397
            P V T++ LI  LC   ++   +++ 
Sbjct: 505 HPNVFTLSCLIDGLCKDGRISDAIKLF 531



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 38/352 (10%)

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G+ D M++V+ +MV  G  PNV TYG LIDGC + G   KAF  +  M  K + P  V
Sbjct: 170 KKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVV 229

Query: 199 VFNALITA-CGQS----------------------------------GAVDRAFDVLAEM 223
           ++  LI   CG+S                                    V +A ++  EM
Sbjct: 230 IYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEM 289

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
             +   + P+ +T G L+       ++  AR+    +  + +     VY   I+   + G
Sbjct: 290 LGD--GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAG 347

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           +   A S++ ++ K  ++PD    S LI       ++E A  +LQE K +G     ++Y+
Sbjct: 348 NLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYN 407

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +L+       N +KA+E+   M    ++P + T + LI   C   ++   M + ++M   
Sbjct: 408 TLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIK 467

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           GL P+ + Y+ L+    +  + +    L  + +E G+ PN+    C+I G+C
Sbjct: 468 GLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLC 519



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 102/493 (20%), Positives = 193/493 (39%), Gaps = 69/493 (13%)

Query: 23  HDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QK 75
           H++   + +Y+ LI+      R+ E   LL++M++KG L     Y+      CK    +K
Sbjct: 362 HEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEK 421

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           AI+   +  +    P + TF+ L+     +   E A  +   +   GL  D   YT LI 
Sbjct: 422 AIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALID 481

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY------GIMR 189
              K G     F +  EM  AG+ PNV T   LIDG  K G+++ A   +          
Sbjct: 482 GHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTG 541

Query: 190 SKNVKPDRVV----------FNALITACGQSGAVDRAFDVLAEMNAEVH----------- 228
           SK  + DR +          F  +   C     V + F    +  A +H           
Sbjct: 542 SKTNELDRSLYQMCSLALSLFRGISEPCICVIRVTKLFATNNQPKAHLHTHLKPPKSNQT 601

Query: 229 ------------------------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                                   P   D  ++   +KAC     +   ++++ ++  + 
Sbjct: 602 LKRYLQSSNTSKVLLFFRILLRKNPSSIDSFSLMFALKACTLKSSLVEGKQMHALVINFG 661

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            +    + T  I+  S TG+   A +++D++  K +I     +SA +D      +   A 
Sbjct: 662 FEPIIFLQTSLISMYSATGNVADAHNMFDEIPSKNLISWTSVISAYVD----NQRPNKAL 717

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++ ++ +   +   I++ +  + AC++         ++ +++   L   +   N+LI   
Sbjct: 718 QLFRQMQMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLI--- 774

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPN 443
              +   K  E+ +  +   + PN +T+  +L+AC     VE G       KED  + P 
Sbjct: 775 ---NMYSKCGEIGTARRFSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPR 831

Query: 444 LVMFKCIIGMCSR 456
           +  F C++ +  R
Sbjct: 832 ISHFGCMVDLLCR 844



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 145/346 (41%), Gaps = 38/346 (10%)

Query: 134 ITTCAKSGKVDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           I TC  + +     E+FH +   A +  N   Y A+I     A   AKA           
Sbjct: 44  ILTCRTANQA---LELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKA----------- 89

Query: 193 VKPDRVVFNALITACGQSGAVDR----AFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               R +   LI  C Q+    R     F+VL+ +  E     P+    G L+ A +  G
Sbjct: 90  ----RCLMRDLI-QCLQNSRRSRICCSVFNVLSRL--ESSKFTPN--VFGVLIIAFSEMG 140

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            V+ A  VY   +K ++    +   + ++   + G ++    VY DM  +G  P+ V   
Sbjct: 141 LVEEALWVY---YKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYG 197

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            LID     G    AF +  E   + I   ++ Y+ L+          +A  ++  M++ 
Sbjct: 198 TLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNS 257

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            + P + T N ++   C    + K +E+  +M   GL PN +T+ IL+    + D++   
Sbjct: 258 GMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSA 317

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 473
              L      GV+PN+ ++ C+I G C     KA  L+E  LS +S
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYC-----KAGNLSE-ALSLHS 357



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 12/211 (5%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + +A   F  +P+  L ++  ++S    ++    A Q+ R +Q   ++ D    T  ++ 
Sbjct: 682 VADAHNMFDEIPSKNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSA 741

Query: 137 CAKSGKVDAMFEVFHEMV-NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
           CA  G +D M E  H  + + G++ ++    +LI+  +K G++  A       R   V P
Sbjct: 742 CADLGALD-MGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTA------RRFSLVLP 794

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + V F  ++ AC  +G V+        M  E + + P     G ++     AG +    E
Sbjct: 795 NDVTFMGVLMACSHAGLVEEGKQHFRSMK-EDYSLRPRISHFGCMVDLLCRAGLLT---E 850

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
            Y+ I K  ++    V+   +  CS  G W+
Sbjct: 851 AYEFILKMPVRPNAVVWRTLLGACSLQGMWD 881



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 100/244 (40%), Gaps = 39/244 (15%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           ++N G EP +    +LI   +  G VA A   +  + SKN+    + + ++I+A   +  
Sbjct: 657 VINFGFEPIIFLQTSLISMYSATGNVADAHNMFDEIPSKNL----ISWTSVISAYVDNQR 712

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
            ++A  +  +M  ++  V PD +T+   + ACA+ G +D    ++  I    +     + 
Sbjct: 713 PNKALQLFRQM--QMDDVQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLN 770

Query: 273 TIAINCCSQTGDW----EFACSVYDDMTKKGVI--------------------------P 302
              IN  S+ G+      F+  + +D+T  GV+                          P
Sbjct: 771 NSLINMYSKCGEIGTARRFSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRP 830

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
                  ++D    AG +  A+E + +     +    + + +L+GACS    W K + + 
Sbjct: 831 RISHFGCMVDLLCRAGLLTEAYEFILKMP---VRPNAVVWRTLLGACSLQGMWDKKMLVR 887

Query: 363 EHMK 366
             +K
Sbjct: 888 NQIK 891


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 201/434 (46%), Gaps = 9/434 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           N      RISE + L++ M   G     +    + H   F   K+ +A+    R      
Sbjct: 143 NGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHG-LFQHNKASEAVALVERMVVKGC 201

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+  +++      + + A  +L  +++  ++AD  +Y+T+I +  K   VD    
Sbjct: 202 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALN 261

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM N GI P+V TY +LI      G+ + A      M  + + P+ V FN+LI A  
Sbjct: 262 LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFA 321

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  A  +  EM      +DP+ +T  +L+       ++D A++++ ++   +    
Sbjct: 322 KEGKLIEAEKLFDEMIQ--RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   IN   +         ++ DM+++G++ + V  + LI     A   + A  + +
Sbjct: 380 VVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439

Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +  + G+   I++Y++L+ G C N K  +KA+ ++E+++  K++P + T N +   +C  
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKA 498

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++    ++   +   G+ P+ I Y+ ++    +K   E    L  + KEDG +P+   +
Sbjct: 499 GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY 558

Query: 448 KCIIGMCSRRYEKA 461
             +I    R  +KA
Sbjct: 559 NTLIRAHLRDGDKA 572



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 173/390 (44%), Gaps = 41/390 (10%)

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  KL   P++ T N L++  C  ++ SE    V ++V E G + D   +TTL+    + 
Sbjct: 125 KMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQH 183

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            K      +   MV  G +P++ TYGA+I+G  K G+   A      M    ++ D V++
Sbjct: 184 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 243

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + +I +  +   VD A ++  EM+ +   + PD  T                        
Sbjct: 244 STVIDSLCKYRHVDDALNLFTEMDNK--GIRPDVFT------------------------ 277

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                      Y+  I+C    G W  A  +  DM ++ + P+ V  ++LID     GK+
Sbjct: 278 -----------YSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKL 326

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A ++  E   + I   I++Y+SL+          +A +++  M S    P V T N L
Sbjct: 327 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I   C   ++   ME+  DM   GL  NT+TY+ L+    +  D +   M+  Q   DGV
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446

Query: 441 IPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
            PN++ +  ++ G+C   + EKA  + E++
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 179/388 (46%), Gaps = 9/388 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G     ++LL  ME KG ++ D V ++   +     + + +A   F  + N   
Sbjct: 213 NGLCKRGEPDLALNLLNKME-KGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGI 271

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T++ L+S   +      A ++L  + E  +  +   + +LI   AK GK+    +
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM+   I+PN+ TY +LI+G     ++ +A   + +M SK+  PD V +N LI    
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFC 391

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++  V    ++  +M+     +  + +T   L+     A   D A+ V+K +    +   
Sbjct: 392 KAKKVVDGMELFRDMSR--RGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPN 449

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++   + G  E A  V++ + K  + PD    + + +    AGKVE  +++  
Sbjct: 450 IMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFC 509

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 387
               +G+   +I+Y++++         ++A  L+  MK     P   T N LI A L DG
Sbjct: 510 SLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDG 569

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           D+   + E++ +M+S     +  TY ++
Sbjct: 570 DK-AASAELIKEMRSCRFAGDASTYGLV 596



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 112/256 (43%), Gaps = 13/256 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK--EAFRFF 84
           +YN LI       R+ E   +   M  K  L     Y+      CK++K +   E FR  
Sbjct: 347 TYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDM 406

Query: 85  K---LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
               LV N    T+  L+     + D + A  V + +   G+  +   Y TL+    K+G
Sbjct: 407 SRRGLVGNTV--TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K++    VF  +  + +EP+++TY  + +G  KAG+V   +  +  +  K VKPD + +N
Sbjct: 465 KLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYN 524

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I+   + G  + A+ +  +M  E  P+ PD  T   L++A    G    + E+ K + 
Sbjct: 525 TMISGFCKKGLKEEAYTLFIKMK-EDGPL-PDSGTYNTLIRAHLRDGDKAASAELIKEMR 582

Query: 262 KYNIKGTPEVYTIAIN 277
                G    Y +  +
Sbjct: 583 SCRFAGDASTYGLVTD 598


>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 165/368 (44%), Gaps = 18/368 (4%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ML++     KD   AF V   V + GLK D  LY  +I      G +D       
Sbjct: 478 MKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVK 537

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM      P   T+  +I G A++G + +A   + +MR     P    FNALI    +  
Sbjct: 538 EMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKC 597

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +++A ++L EM+  +  + P+  T   +M   A+ G   +A E +  +    ++     
Sbjct: 598 QMEKAVEILDEMS--LAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYT 655

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M+ + +  +    + LID     G V  A E++Q+ K
Sbjct: 656 YEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMK 715

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I +Y+S + AC  A + Q+A +  + M+ + +KP + T   LI          
Sbjct: 716 QEGVQPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPE 775

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           K ++   +MKS GL P+   Y  L+ +            LLS+A     +    ++  ++
Sbjct: 776 KALKCFQEMKSAGLKPDKAVYHCLMTS------------LLSRAS----VAEEYIYSGVV 819

Query: 452 GMCSRRYE 459
           G+C    E
Sbjct: 820 GICREMIE 827



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 160/343 (46%), Gaps = 2/343 (0%)

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           ++R ++E G+ A   +Y T++      G  +    VF  +   G  P+V +YG LI+   
Sbjct: 395 LVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYI 454

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           K G+V+KA     +M    +K +   ++ LI    +      AF V  ++  +   + PD
Sbjct: 455 KIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKD--GLKPD 512

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +    +++A    G +DRA    K + K   + T   +   I+  +++GD   A  ++D
Sbjct: 513 VVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFD 572

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M   G IP     +ALI       ++E A EIL E    GIS    +Y+++M   ++  
Sbjct: 573 MMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLG 632

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           +  KA E +  +K+  L+  V T  AL+ A C   ++   + V  +M S  +  NT  Y+
Sbjct: 633 DTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYN 692

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           IL+    R+ DV     L+ Q K++GV P++  +   I  C +
Sbjct: 693 ILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCK 735



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/406 (21%), Positives = 178/406 (43%), Gaps = 33/406 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+   F ++++  A   D   A      ++  G++    +YT+LI   A    +
Sbjct: 260 FERIKKPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDM 319

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +       +M   GIE ++ TY  L+ G AK      A   +   + ++   + +++  +
Sbjct: 320 EEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNI 379

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  Q+  + +A  ++ EM  E    P+D                              
Sbjct: 380 IYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGF 439

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  I+ G L+      G+V +A EV KM+    IK   + Y++ IN   +  DW  A +
Sbjct: 440 TPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFA 499

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++D+ K G+ PD V  + +I      G ++ A   ++E + +       ++  ++   +
Sbjct: 500 VFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFA 559

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            + + ++ALE+++ M+     PTV T NALI  L +  Q+ K +E+L +M   G+ PN  
Sbjct: 560 RSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEH 619

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           TY+ ++       D        ++ K +G+  ++  ++ ++  C +
Sbjct: 620 TYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCK 665



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 5/239 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNV---CKSQKAIKEAFRFFKLVPNPTLS 93
           R G +   +++ + M   G +     ++A    +   C+ +KA++          +P   
Sbjct: 560 RSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEH 619

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+  +M   AS  D+  AF+    ++  GL+ D   Y  L+  C KSG++ +   V  EM
Sbjct: 620 TYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREM 679

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            +  I  N   Y  LIDG A+ G V +A      M+ + V+PD   + + I AC ++G +
Sbjct: 680 SSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDM 739

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
            RA   + EM  EV  V P+  T   L+   A A   ++A + ++ +    +K    VY
Sbjct: 740 QRATKTIQEM--EVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVY 796



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 39/165 (23%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    R+G + E  +L++ M+++G+                               
Sbjct: 691 YNILIDGWARRGDVWEAAELMQQMKQEGV------------------------------- 719

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + T+   ++ C  + D + A + ++ ++  G+K + K YTTLI   A++   +   
Sbjct: 720 -QPDIHTYTSFINACCKAGDMQRATKTIQEMEVVGVKPNIKTYTTLIHGWARASLPEKAL 778

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF---GAYGIMR 189
           + F EM +AG++P+   Y  L+        VA+ +   G  GI R
Sbjct: 779 KCFQEMKSAGLKPDKAVYHCLMTSLLSRASVAEEYIYSGVVGICR 823


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 199/430 (46%), Gaps = 13/430 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN +I    R G+ S+ + + ++M   G++     Y+       K    ++  FR    
Sbjct: 18  SYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGD-LEAGFRLRDQ 76

Query: 87  V----PNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +    P P + T+N+L+S +C + +  E    +  +   + +  D   Y+ L     ++G
Sbjct: 77  MLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHS-MFPDGFTYSILFDGLTRTG 135

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +   M  +F E +  G+    +T   L++G  K G+VAKA     ++    + P  V++N
Sbjct: 136 ESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYN 195

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    Q   +  AF +  +M +    + PDHIT  AL+        V +A ++   + 
Sbjct: 196 TLINGYCQVRDLRGAFCIFEQMKS--RHIRPDHITYNALINGLCKLEMVTKAEDLVMEME 253

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K  +  + E +   I+     G  E   +V  DM +KG+  D +   +++      GK+ 
Sbjct: 254 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 313

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  IL +   + ++     Y+S++ A   + + ++A  L E MK+  +  ++ T N L+
Sbjct: 314 EAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLL 373

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   Q+ +  E++  +++ GL P+ ++Y+ ++ AC  K D +  L LL +  + G+ 
Sbjct: 374 KGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIR 433

Query: 442 PNLVMFKCII 451
           P L  +  ++
Sbjct: 434 PTLRTYHTLV 443



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 18/408 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN L+    R GR+ E   L+++M    +      Y   F  + ++ ++ +     F  
Sbjct: 88  TYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGES-RTMLSLFAE 146

Query: 85  KLVPNPTLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            L     L  +    +L  +C   K ++ A QVL ++   GL     +Y TLI    +  
Sbjct: 147 SLKKGVMLGAYTCSILLNGLCKDGKVAK-AEQVLEMLVHTGLVPTTVIYNTLINGYCQVR 205

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +   F +F +M +  I P+  TY ALI+G  K   V KA      M    V P    FN
Sbjct: 206 DLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFN 265

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MI 260
            LI A G +G +++ F VL++M  +   +  D I+ G+++KA    G++  A  +   MI
Sbjct: 266 TLIDAYGTAGQLEKCFTVLSDMQQK--GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMI 323

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
           +K ++    +VY   I+   ++GD E A  + + M   GV    V  + L+     + ++
Sbjct: 324 YK-DVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQI 382

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A E++   +NQG+   ++SY++++ AC N  +  KALEL + M    ++PT+ T + L
Sbjct: 383 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 442

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACERKDDV 425
           ++AL    ++     +   M    + P++  Y I++   V CE    V
Sbjct: 443 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKV 490



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 197/437 (45%), Gaps = 14/437 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P   ++N++++    S     A +V   + + G+  +   Y T+I    K G ++A F
Sbjct: 12  PPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGF 71

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +  +M++ G +PN+ TY  L+ G  +AG++ +       M S ++ PD   ++ L    
Sbjct: 72  RLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGL 131

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G       + AE  +    V     T   L+      G+V +A +V +M+    +  
Sbjct: 132 TRTGESRTMLSLFAE--SLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVP 189

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T  +Y   IN   Q  D   A  +++ M  + + PD +  +ALI+       V  A +++
Sbjct: 190 TTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLV 249

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E +  G+   + ++++L+ A   A   +K   +   M+   +K  V +  +++ A C  
Sbjct: 250 MEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN 309

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++P+ + +L DM    + PN   Y+ ++ A     D E   +L+ + K  GV  ++V +
Sbjct: 310 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTY 369

Query: 448 KCII-GMC-SRRYEKA---------RTLNEHVLSFNSGRPQIENKW-TSLALMVYREAIV 495
             ++ G+C S + ++A         + L   V+S+N+      NK  T  AL + +E   
Sbjct: 370 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 429

Query: 496 AGTIPTVEVVSKVLGCL 512
            G  PT+     ++  L
Sbjct: 430 YGIRPTLRTYHTLVSAL 446


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 194/431 (45%), Gaps = 35/431 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VPNP 90
             + G     + + +D   KG      +Y+      CK +K ++    F K+     P  
Sbjct: 511 FFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPD 570

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            ++   ++   C      E A ++  + +  G+ +  ++Y +LIT   +S ++  +  + 
Sbjct: 571 EITYRTLIDGYCKVGNLVE-ALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLL 629

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM N  + PNV TYG+LI G    G + KA+ AY  M  K + P+ ++ + ++++  + 
Sbjct: 630 AEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRH 689

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD------RAREVYKMIHKYN 264
           G +D A  +L ++ A++ P+              A+A  V+      R  E  K++  + 
Sbjct: 690 GKIDEANLILHQI-ADIDPI-------------AAHAHSVELPKSDLRHLETQKIVDSFG 735

Query: 265 IKGTPE------VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            K          VY IAI    ++ + +    +  D+  KG  PD     +LI      G
Sbjct: 736 KKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVG 795

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           KV  AF +  +  N G+   I+ Y++L+     + N  +A  L+  +    L PTV T N
Sbjct: 796 KVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYN 855

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL--VACERKDDVEVGLM--LLSQ 434
            LI   C G +  + +E+   M+  G+CP++ITYS L+  +  E K +  VGL+  ++  
Sbjct: 856 TLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKA 915

Query: 435 AKEDGVIPNLV 445
            K   V+  LV
Sbjct: 916 GKGSSVMDPLV 926



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 114/477 (23%), Positives = 197/477 (41%), Gaps = 63/477 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+L + N L+S    + ++  A  V   +   G+  D   YT ++    K G+VD  F  
Sbjct: 219 PSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNF 278

Query: 150 FHEMVNAGIEPNVHTYGALIDG-------CA----------------------------K 174
             EM  +  EPNV TY +LIDG       C                             K
Sbjct: 279 VKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCK 338

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF---DVLAEMNAEVHPVD 231
            GQ+ +A    G M  KN+  D  V+  LI A   +G VD A    D + ++  +++ V 
Sbjct: 339 RGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTV- 397

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
                  +L+      G V++A EV   +  +N+K     Y   ++   +  D+  A  +
Sbjct: 398 ----ICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKL 453

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
            D+M  KGV    V  + L+    H G VE A  I      +G++   ++Y +L+ A   
Sbjct: 454 CDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFK 513

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
              + +A+ +++   S     +++  N +I   C  ++L +  E+   MK LG  P+ IT
Sbjct: 514 VGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEIT 573

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE-----------K 460
           Y  L+    +  ++   L L   ++ DG+  +  M+  +I    R  E           K
Sbjct: 574 YRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMK 633

Query: 461 ARTLNEHVLSFNSGRPQIENKWTSLALM-----VYREAIVAGTIPTVEVVSKVLGCL 512
            R L+ +V+++ S    +   W    +M      Y + I  G  P + + SK++  L
Sbjct: 634 NRELSPNVVTYGS----LIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSL 686



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 183/426 (42%), Gaps = 37/426 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N   ++GR+ E  + +++MER               + C+                 P +
Sbjct: 264 NAYCKEGRVDEAFNFVKEMER---------------SCCE-----------------PNV 291

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+N L+    S  D  GA +VL L+ E G+  + + YT LI    K G+++   ++   
Sbjct: 292 VTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGC 351

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+   +  + H YG LI     AG+V  A      M    +K + V+ N+LI    + G 
Sbjct: 352 MMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGH 411

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V++A +VL  M      + PD      L+          +A ++   +H   +  T   Y
Sbjct: 412 VNKAAEVLVSMKD--WNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTY 469

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              +      G  E A  +++ M K+GV P+EV    L+D     G  + A  I ++A +
Sbjct: 470 NTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALS 529

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G +  I  Y++++      +   +A E++  MK +   P   T   LI   C    L +
Sbjct: 530 KGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVE 589

Query: 393 TMEVLSDMKSL-GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            ++ L DM    G+  +T  Y+ L+    R ++++    LL++ K   + PN+V +  +I
Sbjct: 590 ALK-LKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLI 648

Query: 452 -GMCSR 456
            G C +
Sbjct: 649 AGWCDK 654



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 171/375 (45%), Gaps = 7/375 (1%)

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +R F   P    + F+M++ V A    ++ A  V   + + G     +   +L++   ++
Sbjct: 179 YREFSFSP----TVFDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQN 234

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+      V+ +M+  GI P++ +Y  +++   K G+V +AF     M     +P+ V +
Sbjct: 235 GEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTY 294

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N+LI      G V  A  VLA M+ +  P +    T+  L+K     GQ+++A ++   +
Sbjct: 295 NSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTL--LIKGYCKRGQMEQAEKLIGCM 352

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            + N+     VY + I+     G  + A  + D M K G+  + V  ++LI+     G V
Sbjct: 353 MEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHV 412

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A E+L   K+  +      Y++L+      +++ KA +L + M +  +  TV T N L
Sbjct: 413 NKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTL 472

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +  L     +   + + + M   G+ PN +TY  LL A  +    +  +M+   A   G 
Sbjct: 473 LKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGF 532

Query: 441 IPNLVMFKCII-GMC 454
             ++ ++  +I G C
Sbjct: 533 TKSITLYNTMICGFC 547


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 177/408 (43%), Gaps = 22/408 (5%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           N   S+  + EA   F+ +P+  + ++N+L+ V   +   E A Q   L  E     D  
Sbjct: 239 NAVLSRLPLDEAIELFQGLPDKNVCSYNILLKVLCGAGRVEDARQ---LFDEMASPPDVV 295

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            Y  LI      G+++   ++  +MV  G+EPN   Y +++      G+V+ A      M
Sbjct: 296 TYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDM 355

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               V  D  V+  +++     G +  A     EM  +   +  D +T   L+     AG
Sbjct: 356 VHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRK--GLATDGVTYTTLINGLCRAG 413

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           ++  A +V + +    +      YT+ ++   + G    A  V++ M ++GV P+ V  +
Sbjct: 414 ELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYT 473

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           AL D     G V+AA E+L E  N+G+ +   +Y+SL+     A    +A+     M + 
Sbjct: 474 ALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAA 533

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            LKP V T   LI ALC   +L +  ++L +M   G+ P  +TY++L+        VE G
Sbjct: 534 GLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGG 593

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-----------------GMCSRRYE 459
             LL    E  + PN   +  ++                 GMCSR  E
Sbjct: 594 KKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVE 641



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 189/411 (45%), Gaps = 7/411 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L  +GR+S+ + ++EDM    ++  + VY       C     +  A R+F  +    L+T
Sbjct: 339 LCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVS-ARRWFDEMQRKGLAT 397

Query: 95  ----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               +  L++    + + + A +VL+ +    L  D   YT L+    K GK+   F+V 
Sbjct: 398 DGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVH 457

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           + MV  G+ PNV TY AL DG  K G V  A      M +K ++ +   +N+LI    ++
Sbjct: 458 NTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKA 517

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D+A   +A+M+A    + PD  T   L+ A   +G++DRA ++ + +    IK T  
Sbjct: 518 GYLDQAMRTMADMDAA--GLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIV 575

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y + +N    +G  E    + + M +K + P+    ++L+        +++  EI +  
Sbjct: 576 TYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGM 635

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            ++ +     +Y+ L+     A++ ++A   +  M     + T S+ +ALI  L    + 
Sbjct: 636 CSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKF 695

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            +  ++  DM+  G       Y+  +     +D++E  L L  +  E  ++
Sbjct: 696 VEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVEASIV 746



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 183/416 (43%), Gaps = 12/416 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFRF 83
           +H Y  L   G +   + LL+DM  +G+     VY +    +C   +      + E    
Sbjct: 301 IHGYCAL---GELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVH 357

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K++ +   + +  ++S   +  D   A +    +Q  GL  D   YTTLI    ++G++
Sbjct: 358 HKVILDE--AVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGEL 415

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
               +V  EM+   ++ +  TY  L+DG  K G++A+AF  +  M  + V P+ V + AL
Sbjct: 416 KEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTAL 475

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
                + G V  A ++L EM+ +   ++ +  T  +L+     AG +D+A      +   
Sbjct: 476 SDGLCKQGDVQAANELLHEMSNK--GLELNACTYNSLINGLCKAGYLDQAMRTMADMDAA 533

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            +K     YT  I+   ++G+ + A  +  +M   G+ P  V  + L++    +G+VE  
Sbjct: 534 GLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGG 593

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            ++L+    + I     +Y+SLM       N +   E+Y+ M S  ++P  +T N LI  
Sbjct: 594 KKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKG 653

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
            C    + +     ++M   G      +YS L+    +K        L    +++G
Sbjct: 654 HCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEG 709



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 7/210 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G + + +  + DM+  GL      Y      +CKS +  +      ++
Sbjct: 506 TYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEM 565

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   PT+ T+N+LM+    S   EG  ++L  + E  +  +   Y +L+        +
Sbjct: 566 LDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNM 625

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
            +  E++  M +  +EPN +TY  LI G  KA  + +A   +  M  K  +     ++AL
Sbjct: 626 KSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSAL 685

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           I    +      A  +  +M  E    +PD
Sbjct: 686 IRLLNKKKKFVEARKLFHDMRKEGFTAEPD 715


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 199/464 (42%), Gaps = 19/464 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  ++ L+     S   E   +V   + E G++ D  +YT LI +  K GK      V
Sbjct: 183 PNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGV 242

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              MV  G+EPNV TY  LI+   K G V +A G    M  K V PD V +N LI     
Sbjct: 243 MDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A  +L EM    + V P+ +T  ++++   + G++ +A +V  M+ +       
Sbjct: 303 VLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNL 362

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y + I    +      A  + D+MT  G+ PD    S LI       +V+ A ++L  
Sbjct: 363 VTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLST 422

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            +++GI   +  Y  L+ A       ++A  L+  M +      V   + +I   C    
Sbjct: 423 MRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVVAYSTMIHGACKAGD 481

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L    E+L  +   GL P+ +TYSI++    +  D+E    +L Q    G +P++ +F  
Sbjct: 482 LKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDS 541

Query: 450 IIGMCSRRYE-------------KARTLNEHVLSFNSGRPQIENKWTSL--ALMVYREAI 494
           +I   S + E             K   L+  ++S  S      N+  +L  +L  +   I
Sbjct: 542 LIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVASNEGKALLQSLPDFSAEI 601

Query: 495 VAGTIPTVEVVSKVLG---CLQLPYNADIRERLVENLGVSADAL 535
             G I + + + KVL      + P N  + +R   NLG  A +L
Sbjct: 602 SKGNINSPQELMKVLHNAISFKAPSNQQLHKRAKLNLGTFAGSL 645



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 165/348 (47%), Gaps = 9/348 (2%)

Query: 81  FRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            R   L P+P       ++ +LM    + + ++ A  +LR ++ AG++AD   Y TLI  
Sbjct: 100 LRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRG 159

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
              + +VD   E+  EM  +GIEPNV  Y +L+ G  K+G+       +  M  K ++PD
Sbjct: 160 LCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD 219

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V++  LI +  + G   +A  V+  M      ++P+ +T   L+      G V  A  V
Sbjct: 220 VVMYTGLIDSLCKVGKAKKAHGVMDMMVRR--GLEPNVVTYNVLINCMCKEGSVKEAIGV 277

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT--KKGVIPDEVFLSALIDFA 314
            K + +  +      Y   I   S   + + A  + ++M   K  V P+ V  +++I   
Sbjct: 278 LKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGL 337

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G++  AF++    +  G  V +++Y+ L+G        +KA+EL + M S+ L+P  
Sbjct: 338 CDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDS 397

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER 421
            T + LI   C   Q+ +  ++LS M+  G+ P    Y  LLVA CE+
Sbjct: 398 FTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQ 445



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 123/263 (46%), Gaps = 4/263 (1%)

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQVDRAR 254
           D V +N ++TA  + G  DRA  +L  M+ E HP   P+ ++   LM+A       D+A 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            + + +    ++     Y   I       + + A  +  +M + G+ P+ V  S+L+   
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             +G+ E   ++  E   +GI   ++ Y+ L+ +       +KA  + + M    L+P V
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNV 255

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI  +C    + + + VL  M   G+ P+ +TY+ L+       +++  + LL +
Sbjct: 256 VTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEE 315

Query: 435 A--KEDGVIPNLVMFKCII-GMC 454
               ++ V PN+V F  +I G+C
Sbjct: 316 MVRGKNIVKPNVVTFNSVIQGLC 338


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 172/375 (45%), Gaps = 14/375 (3%)

Query: 56  LLDMDKVYHARFFNVCKSQ-------KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108
           LLD       R FNV            + ++ F   +    PT+ TFN L+S    ++D 
Sbjct: 177 LLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDL 236

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           +    + + + + G+K D   Y  LI    ++G+++   ++F+EM + G+ PN   +  L
Sbjct: 237 DAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTL 296

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEV 227
           ID   K G V      Y  MR + V PD V +NAL+    ++  +  A  ++ EM NA +
Sbjct: 297 IDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGL 356

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
               PD +T   L+  C   G++D A ++ + + +  +      YT  I+  S+ G    
Sbjct: 357 K---PDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVD 413

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  V  +M +  + PD    + +ID     G V+  F++L+E +N+G   G+++Y+ +M 
Sbjct: 414 AERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMN 473

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                   + A  L   M +I + P   T N L+   C   ++  + E+ S   S G+ P
Sbjct: 474 GLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELES---SKGMVP 530

Query: 408 NTITYSILLVACERK 422
           +   Y+ L+    +K
Sbjct: 531 DFAVYTSLISELAKK 545



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 156/309 (50%), Gaps = 4/309 (1%)

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           +  + ++++AG+ P    +  L+    + G++  A   +  MR ++V+P  V FN LI+ 
Sbjct: 171 YTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMR-RSVQPTVVTFNTLISG 229

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             ++  +D A D L +  ++V  V PD  T GAL+K     G+++ A +++  +    + 
Sbjct: 230 MCRARDLD-AVDGLYKEMSDVG-VKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVN 287

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
               V+T  I+   + G+      +Y DM  +GV+PD V  +AL++    A  ++AA  I
Sbjct: 288 PNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESI 347

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           ++E KN G+    ++Y++L+  C        A+++ + M   ++     T  ALI+ L  
Sbjct: 348 VEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSK 407

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +      VL +M    L P+  TY++++ A  RK DV+ G  LL + +  G  P +V 
Sbjct: 408 AGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVT 467

Query: 447 FKCII-GMC 454
           +  I+ G+C
Sbjct: 468 YNVIMNGLC 476



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 174/381 (45%), Gaps = 43/381 (11%)

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA+ F+  + +    P    FN+LM       +   A +V   ++ + ++     + TLI
Sbjct: 169 EAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRS-VQPTVVTFNTLI 227

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +   ++  +DA+  ++ EM + G++P+V+TYGALI G  + G++  A   +  MR   V 
Sbjct: 228 SGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVN 287

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ VVF  LI A  + G V+   D+  +M   V  V PD +   AL+          RAR
Sbjct: 288 PNAVVFTTLIDAHCKEGNVNAGMDLYQDM--RVRGVMPDLVAYNALVNGLC------RAR 339

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
                    N+K                     A S+ ++M   G+ PD+V  + LID  
Sbjct: 340 ---------NLKA--------------------AESIVEEMKNAGLKPDKVTYTTLIDGC 370

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              GK++ A +I Q+   + +S+  ++Y++L+   S A     A  +   M    L+P  
Sbjct: 371 CKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDN 430

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           +T   +I A C    +    ++L +M++ G  P  +TY++++    +   ++   MLL  
Sbjct: 431 TTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHA 490

Query: 435 AKEDGVIPNLVMFKCII-GMC 454
               GV P+ + +  ++ G C
Sbjct: 491 MLNIGVSPDDITYNILLDGQC 511



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 112/238 (47%), Gaps = 4/238 (1%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P+      LM+     G++  AR+V+  + + +++ T   +   I+   +  D +    +
Sbjct: 184 PETRLFNVLMRDFVRLGELVSARKVFDEMRR-SVQPTVVTFNTLISGMCRARDLDAVDGL 242

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           Y +M+  GV PD     ALI      G++E A ++  E ++ G++   + +++L+ A   
Sbjct: 243 YKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCK 302

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
             N    ++LY+ M+   + P +   NAL+  LC    L     ++ +MK+ GL P+ +T
Sbjct: 303 EGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVT 362

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---RRYEKARTLNE 466
           Y+ L+  C +   +++ + +  +  E  V  + V +  +I   S   R  +  R L E
Sbjct: 363 YTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLRE 420



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 117/275 (42%), Gaps = 37/275 (13%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           ++G ++  +DL +DM  +G++                                P L  +N
Sbjct: 302 KEGNVNAGMDLYQDMRVRGVM--------------------------------PDLVAYN 329

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
            L++    +++ + A  ++  ++ AGLK D   YTTLI  C K GK+D   ++  +M   
Sbjct: 330 ALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEK 389

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
            +  +  TY ALI G +KAG+   A      M    ++PD   +  +I A  + G V   
Sbjct: 390 EVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTG 449

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
           F +L EM  +     P  +T   +M      GQ+  A  +   +   NI  +P+  T  I
Sbjct: 450 FKLLKEMQNKGK--KPGVVTYNVIMNGLCKLGQMKNADMLLHAM--LNIGVSPDDITYNI 505

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
               Q    + A S  +  + KG++PD    ++LI
Sbjct: 506 LLDGQCKHGKVANS-EELESSKGMVPDFAVYTSLI 539


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 182/406 (44%), Gaps = 39/406 (9%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--M 146
           N T  T+N L+S CA + D E A  ++  ++E G  +D   Y+ +I +  K+ + ++  +
Sbjct: 196 NLTPLTYNALISACARNNDIEKALNLICRMREDGYPSDLVNYSLIIRSLMKNNRANSSIL 255

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI------------------- 187
            +++ E+    +E +V  +  +I G AKAG + KA    G+                   
Sbjct: 256 QKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWG 315

Query: 188 ----------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
                           MR   ++P    +NAL+    ++G +  A  V++EM  E   V 
Sbjct: 316 LGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEM--ERSGVL 373

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P+  T   L+ A  NA + + AR V K +   N++    V++  +      G+W+    V
Sbjct: 374 PNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQV 433

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
             +M   GV PD +F + LID  G    ++ A        ++GI    I++++L+     
Sbjct: 434 LREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCK 493

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A    +A EL+E M      P  +T N +I +  D ++      +L++M+S GL PN +T
Sbjct: 494 AGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVT 553

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           Y+ L+    +    +  +  L   K  G+ P+  M+  ++   ++R
Sbjct: 554 YTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQR 599



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 164/378 (43%), Gaps = 45/378 (11%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA 145
           V   TL T    +  C  ++++E  F+ +R   + GL+   + Y  L+    K+G + DA
Sbjct: 304 VKTATLVTVIWGLGNCGRTEEAEAIFEEMR---DNGLQPRTRAYNALLRGYVKAGLLRDA 360

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKA------------------------------ 175
            F V  EM  +G+ PN  TY  LID    A                              
Sbjct: 361 EF-VVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILA 419

Query: 176 -----GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
                G+  K F     M    V+PDR+ +N LI   G+   +D A      M +E   +
Sbjct: 420 SYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSE--GI 477

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
           +PD IT   L+     AG+ DRA E+++ + +         + I IN       W+   +
Sbjct: 478 EPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKN 537

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +  +M  +G++P+ V  + LID  G +G+ + A E L + K  G+      Y++L+ A +
Sbjct: 538 LLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYA 597

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
                 +A+  +  M+   LKP++  +N+LI A     +  +   VL  MK   L P+ +
Sbjct: 598 QRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVV 657

Query: 411 TYSIL---LVACERKDDV 425
           TY+ L   L+  E+ D V
Sbjct: 658 TYTTLMKALILVEKFDKV 675



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 160/358 (44%), Gaps = 2/358 (0%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N ++   A + D + A + L +VQ +GL        T+I      G+ +    +F EM 
Sbjct: 274 WNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMR 333

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           + G++P    Y AL+ G  KAG +  A      M    V P+   ++ LI A G +   +
Sbjct: 334 DNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWE 393

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A  VL EM  E   V P+      ++ +  + G+  +  +V + +    ++     Y +
Sbjct: 394 SARIVLKEM--EASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNV 451

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   +    + A + +D M  +G+ PD +  + L+D    AGK + A E+ +E   +G
Sbjct: 452 LIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKG 511

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
                 +++ ++ +  + + W     L  +M+S  L P   T   LI       +    +
Sbjct: 512 YLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAI 571

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           E L DMK+ GL P++  Y+ LL A  ++   +  +      ++DG+ P+L+    +I 
Sbjct: 572 ECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLIN 629



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 171/385 (44%), Gaps = 5/385 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           GR  E   + E+M   GL    + Y+A      K+       F   ++  +   P   T+
Sbjct: 320 GRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTY 379

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           ++L+    +++  E A  VL+ ++ + ++ +  +++ ++ +    G+    F+V  EM +
Sbjct: 380 SLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMED 439

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           +G+ P+   Y  LID   K   +  A   +  M S+ ++PD + +N L+    ++G  DR
Sbjct: 440 SGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDR 499

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A ++  EM  + +   P + T   ++ +  +  + D  + +   +    +      YT  
Sbjct: 500 AEELFEEMMEKGYL--PCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTL 557

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+   ++G ++ A    DDM   G+ P     +AL++     G  + A       ++ G+
Sbjct: 558 IDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGL 617

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              +++ +SL+ A    +   +A  + ++MK   LKP V T   L+ AL   ++  K   
Sbjct: 618 KPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPS 677

Query: 396 VLSDMKSLGLCPNTITYSILLVACE 420
           V  +M   G  P+    ++L  A +
Sbjct: 678 VYEEMILSGCTPDRKARAMLRSALK 702



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 158/344 (45%), Gaps = 11/344 (3%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
            +YN L+R     G + +   ++ +MER G+L  ++ Y +   +   + +  + A    K
Sbjct: 342 RAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTY-SLLIDAYGNAERWESARIVLK 400

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P    F+ +++      + +  FQVLR ++++G++ D   Y  LI T  K  
Sbjct: 401 EMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFN 460

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +D     F  M++ GIEP+  T+  L+D   KAG+  +A   +  M  K   P    FN
Sbjct: 461 CLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLPCNTTFN 520

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I + G     D   ++L  M ++   + P+ +T   L+     +G+ D A E    + 
Sbjct: 521 IMINSFGDQERWDDVKNLLTNMRSQ--GLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMK 578

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              +K +  +Y   +N  +Q G  + A S +  M   G+ P  + L++LI+  G   +  
Sbjct: 579 AAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDV 638

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
            AF +LQ  K   +   +++Y++LM A    + + K   +YE M
Sbjct: 639 EAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKVPSVYEEM 682



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 161/370 (43%), Gaps = 45/370 (12%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +++VP P   +  +L S+C SS     A+ V+  +Q+  L   C  Y  L          
Sbjct: 127 YRVVPGPLWHS--LLKSLCTSSSSIPLAYAVVSWLQKHNL---CFSYELL---------- 171

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                                Y  LI      GQ  K + A+ + + +N+ P  + +NAL
Sbjct: 172 ---------------------YSILIHAL---GQSEKLYEAFLLSQKQNLTP--LTYNAL 205

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH--ITIGALMKACANAGQVDRAREVYKMIH 261
           I+AC ++  +++A +++  M  + +P D  +  + I +LMK   N       +++Y+ I 
Sbjct: 206 ISACARNNDIEKALNLICRMREDGYPSDLVNYSLIIRSLMKN--NRANSSILQKIYREID 263

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  ++   +++   I   ++ GD + A      +   G+      L  +I   G+ G+ E
Sbjct: 264 RDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTE 323

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  I +E ++ G+     +Y++L+     A   + A  +   M+   + P   T + LI
Sbjct: 324 EAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLI 383

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            A  + ++      VL +M++  + PN   +S +L +   K + +    +L + ++ GV 
Sbjct: 384 DAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVR 443

Query: 442 PNLVMFKCII 451
           P+ + +  +I
Sbjct: 444 PDRIFYNVLI 453



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 9/139 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LI    + GR  + I+ L+DM+  GL     +Y+A   N    +    +A   F  
Sbjct: 553 TYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNA-LLNAYAQRGLSDQAVSAFWA 611

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P+L   N L++     +    AF VL+ ++E  LK D   YTTL+       K
Sbjct: 612 MRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEK 671

Query: 143 VDAMFEVFHEMVNAGIEPN 161
            D +  V+ EM+ +G  P+
Sbjct: 672 FDKVPSVYEEMILSGCTPD 690


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 194/424 (45%), Gaps = 9/424 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK--EAFRFFKLVPNP 90
            +L R+ + SE + L   +  +G++  +  Y      +C +  A +  E  R    V  P
Sbjct: 27  TKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGVYTP 86

Query: 91  TLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           T+  +N ++  +C +S+  + A++VL  + E  +  +   YT L+    +S K     EV
Sbjct: 87  TVFIYNGIITGLCRASRVMD-AYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREV 145

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   G +PN  TYG LI   ++AG++ +A       RS  +  D +    ++    +
Sbjct: 146 FQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCK 205

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +D A   + EM      V P+ +T   L+      G++DR    ++   K    G+ 
Sbjct: 206 ASRLDDALKFMEEMRQ--MGVRPNEVTYSNLVHGFRQHGELDRVIRFFEE-EKARKGGSL 262

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           E   Y   ++   + G  + A    +++ + GV+PD V  S LI+    AG+ +A+ E+L
Sbjct: 263 EAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELL 322

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++ +  G+   +++YS+L+      + +Q A  L E M++    P V T N+++  LC  
Sbjct: 323 EDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKS 382

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++ +   V   M      P+ +TYSI++    +   ++  + L    K     P+   +
Sbjct: 383 GKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAY 442

Query: 448 KCII 451
             +I
Sbjct: 443 SMVI 446



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 165/370 (44%), Gaps = 15/370 (4%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           R V EAG K D + +T L T   +  K   +  +F  + + G+     TY  ++DG   A
Sbjct: 8   RSVVEAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGA 67

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G   +A      + S    P   ++N +IT   ++  V  A+ VL +M  E   + P+  
Sbjct: 68  GMANQALELVREL-SGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEE--SIVPNVF 124

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+     + +   AREV++ + +   K  P  Y   I   S+ G+ + A  V  + 
Sbjct: 125 TYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQ 184

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
               +  D +  + ++     A +++ A + ++E +  G+    ++YS+L+         
Sbjct: 185 RSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGEL 244

Query: 356 QKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            + +  +E  K+ K      +     + ALC    L +  + + +++  G+ P+ +TYS+
Sbjct: 245 DRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSM 304

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNE------ 466
           L+    R    +  L LL   + +GV P++V +  +I  +C  R+++ A  L E      
Sbjct: 305 LINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAG 364

Query: 467 ---HVLSFNS 473
              +V+++NS
Sbjct: 365 SPPNVVTYNS 374



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 37/226 (16%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N   R G+    ++LLEDM R G+                                 P +
Sbjct: 307 NTFARAGQFDASLELLEDMRRNGV--------------------------------KPDV 334

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T++ L++V    +  + AF++L L++ AG   +   Y +++    KSGK+D +  V+  
Sbjct: 335 VTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEM 394

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+ +   P+V TY  +++G +KAG +  A   + +++S    PD   ++ +IT+  ++G 
Sbjct: 395 MLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGK 454

Query: 213 VDRAFDVLAEMNAEVHPVDPDHI--TIGALMKACANAGQVDRAREV 256
           ++ A  +   M      V  D+I   +  L+ A  +A + D AR +
Sbjct: 455 LEEACGMYHGMEV---TVAGDNICRALAGLVAALCDAKRTDSARRI 497


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 216/499 (43%), Gaps = 55/499 (11%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A DV       + L R G++    +++ +M+ KG+      + A     C ++K + EA 
Sbjct: 78  APDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARK-VDEAL 136

Query: 82  RFFKLVPNPT-----LSTFNMLMSVCASSKDSEG--AFQVLRLVQEAGLKADCKLYTTLI 134
           + +K +   +     +S+  ++  +C   +  E    FQ + + ++   K D   YT LI
Sbjct: 137 KLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALI 196

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               KSG ++   ++   M      PNV TY +L+ G  KAG + +A   +  M SK   
Sbjct: 197 DGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCV 256

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----------------------- 231
           P+ V +  LI     +  VD A  ++ EM A   P D                       
Sbjct: 257 PNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQL 316

Query: 232 ----------PDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCS 280
                     PD IT   L++   NA +++ AR + + M     I      Y+I +   S
Sbjct: 317 FKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYS 376

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           +   +  A     +M  + V P+ V  S+LID    AG+V  A E+L+          ++
Sbjct: 377 RAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKP----DVV 432

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +Y+ ++         ++AL L E M + +++P+V T N++I ALC    + +  ++L  M
Sbjct: 433 TYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAM 492

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLS----QAKEDGVIPNLV---MFKCII-G 452
            + GL P  +TY+ LL    R   +E+   L      +AK+     NLV    F  +I G
Sbjct: 493 AAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRG 552

Query: 453 MC-SRRYEKARTLNEHVLS 470
           +C +R  +KA  + E + S
Sbjct: 553 LCKAREIDKAMAVVEELRS 571



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 189/404 (46%), Gaps = 10/404 (2%)

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQV 114
           ++ Y+     +CK++   K A+   K + +     P L T++ +++      + + A ++
Sbjct: 9   ERTYNVVVNGLCKARLTSK-AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEI 67

Query: 115 LR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           LR +V   G+  D   YT+++    + GK+D   E+  EM   G+EP+  T+ ALI G  
Sbjct: 68  LREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWC 127

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-EVHPVDP 232
            A +V +A   Y  + + + + D V  +ALIT   +   +  A+++  EM   E     P
Sbjct: 128 NARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKP 187

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           D +T  AL+     +G +++A ++  ++           Y+  ++   + GD + A  ++
Sbjct: 188 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 247

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
             MT KG +P+ V  + LI     A KV+AA  ++ E          +SY++L+      
Sbjct: 248 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRL 307

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTIT 411
              ++A +L++ M +    P   T   L+   C+  +L +   +L +MK+  G+ P+ +T
Sbjct: 308 GRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVT 367

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           YSI++    R          + +     V PN V +  +I G+C
Sbjct: 368 YSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLC 411



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 144/317 (45%), Gaps = 42/317 (13%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR-SKNVKPDRVVFNALITACGQSGAVDRA 216
           + PN  TY  +++G  KA   +KA+     MR  K+V PD V ++ +I    + G +DRA
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
            ++L EM      + PD +T  +++      G++DR                        
Sbjct: 65  CEILREMVTR-DGMAPDVVTYTSVVDGLCRDGKMDR------------------------ 99

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
                      AC +  +M  KGV PD+   SALI    +A KV+ A ++ +E       
Sbjct: 100 -----------ACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCR 148

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTMNALITALCDGDQLPKT 393
           +  +S S+L+      +   +A EL++ M+  +    KP V T  ALI   C    L K 
Sbjct: 149 LDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKA 208

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
           M++L  M+     PN +TYS LL    +  D++  L L  +    G +PN+V +  +I G
Sbjct: 209 MKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHG 268

Query: 453 MC-SRRYEKARTLNEHV 468
           +C + + + AR L + +
Sbjct: 269 LCAAHKVDAARLLMDEM 285



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 169/358 (47%), Gaps = 9/358 (2%)

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
           + Y  ++    K+      +EV  EM +   + P++ TY  +I+G  K G++ +A     
Sbjct: 10  RTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILR 69

Query: 187 IMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
            M +++ + PD V + +++    + G +DRA +++ EM  ++  V+PD  T  AL+    
Sbjct: 70  EMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREM--KLKGVEPDKFTFSALITGWC 127

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---GVIP 302
           NA +VD A ++YK I   + +      +  I    +      A  ++ +M  +      P
Sbjct: 128 NARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKP 187

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D V  +ALID    +G +E A ++L   + +     +++YSSL+     A +  +AL+L+
Sbjct: 188 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 247

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
             M S    P V T   LI  LC   ++     ++ +M +     +T++Y+ LL    R 
Sbjct: 248 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRL 307

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI 478
             +E    L  +      +P+ + + C++ G C + R E+AR L E++ +     P +
Sbjct: 308 GRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDV 365



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 138/316 (43%), Gaps = 46/316 (14%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRL 117
           Y+A     C+  + I+EA + FK +      P   T+  L+   C +S+  E  F +  +
Sbjct: 297 YNALLDGYCRLGR-IEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENM 355

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
              AG+  D   Y+ ++   +++ +     E   EM+   + PN  TY +LIDG  KAG+
Sbjct: 356 KTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGR 415

Query: 178 VAKAF-------------------GAYGIMRS------------KNVKPDRVVFNALITA 206
           V  A                    G  G  R+            K V+P    FN++I A
Sbjct: 416 VNHAMEVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGA 475

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G +D A+ +L  M A  H ++P  +T   L++  +  G+++ A E+++++ +   K
Sbjct: 476 LCRLGDMDEAWKLLVAMAA--HGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKK 533

Query: 267 GT------PE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
            +      PE  ++  I    +  + + A +V +++  +   P E    A++D    AG+
Sbjct: 534 SSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGR 593

Query: 320 VEAAFEILQEAKNQGI 335
            E A +++      G+
Sbjct: 594 TEEAGKLINSISKVGL 609



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 92/190 (48%), Gaps = 22/190 (11%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A +V+    +Y+ LI    + GR++  +++L+++++  ++     Y      +C + +  
Sbjct: 393 ARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDVV----TYTIVIEGLCGTDRT- 447

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +EA    + + N    P++ TFN ++       D + A+++L  +   GL+     YTTL
Sbjct: 448 EEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTL 507

Query: 134 ITTCAKSGKVDAMFEVFHEMVN--------AGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           +   +++G+++  +E+F  M          A + P    + ALI G  KA ++ KA    
Sbjct: 508 LEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPE-QAFSALIRGLCKAREIDKAMAVV 566

Query: 186 GIMRSKNVKP 195
             +RS+  +P
Sbjct: 567 EELRSRECEP 576


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/448 (23%), Positives = 200/448 (44%), Gaps = 13/448 (2%)

Query: 31  SYNRLI----RQGRISEC-IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           SYN +I    ++G + +  I   E ++R+  +  D V +          +A+  A     
Sbjct: 13  SYNTIIDGLFKEGDVDKAYITYHEMLDRR--VSPDAVTYNSIIAALSKAQAMDRAMEVLT 70

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           ++  P   T+N +M    SS  SE A  + R +   G++ D   Y +L+    K+GK   
Sbjct: 71  VMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTE 130

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++F  MV  G++P++ TYG L+ G A  G + +      +M    ++ D  VFN LI 
Sbjct: 131 ARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILIC 190

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           A  +   VD    V ++M  +   + P+ +    ++      G++D A   ++ +    +
Sbjct: 191 AYTKQEKVDEVVLVFSKMRQQ--GLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGL 248

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                VYT  I+       WE A  +  ++  +G+ P+ VF + ++D     G+V  + +
Sbjct: 249 TPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKK 308

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +     + G++  +I+YS+L+     A     A++L   M S+ LKP   T + LI   C
Sbjct: 309 LFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYC 368

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             +++   + +  +M+S G+ P+ ITY+I+L    R         L ++  E G    L 
Sbjct: 369 KINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELS 428

Query: 446 MFKCIIGMCSRRYEKARTLNEHVLSFNS 473
            +  I+      + K  +L  H   F +
Sbjct: 429 TYNIIL----MDFAKTNSLMMHFGCFRT 452



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 133/292 (45%), Gaps = 6/292 (2%)

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P+V +Y  +IDG  K G V KA+  Y  M  + V PD V +N++I A  ++ A+DRA +V
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L  M      V P+  T  ++M    ++GQ ++A  +++ +    I+     Y   ++  
Sbjct: 69  LTVM------VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYL 122

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            + G    A  ++D M K+G+ PD      L+      G +    ++L      G+ +  
Sbjct: 123 CKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDH 182

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
             ++ L+ A +  +   + + ++  M+   L P       +I  LC   +L   M     
Sbjct: 183 HVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQ 242

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           M   GL PN + Y+ L+ A    D  E    L+ +  + G+ PN+V F  I+
Sbjct: 243 MIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTIL 294


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 160/334 (47%), Gaps = 5/334 (1%)

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           +K +   Y T+I +  K G +D   E+F EM   GI P+V  Y ++I G    G+   A 
Sbjct: 234 IKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAK 293

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
           G +  M  + V P+ V FN LI A  ++G ++ A  +L  M        PD  T   L+ 
Sbjct: 294 GLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGE--SPDTFTYNTLID 351

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
                G++D AR+++  +    I+     Y + IN   ++G    A  +Y +M  K ++P
Sbjct: 352 GFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMP 411

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 361
             +  + L+      GKV  A+ +  E K   ++    +Y+ L+ G C N  +  +A+EL
Sbjct: 412 TVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKN-NHLSEAMEL 470

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           + ++++   +P++   N LI  LC   ++    E+ + +   GL PN ITY++++    +
Sbjct: 471 FHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCK 530

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
              +E    L    +E G  PNLV F  ++ G C
Sbjct: 531 SGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFC 564



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/479 (24%), Positives = 197/479 (41%), Gaps = 54/479 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CKSQKAIK-EAFRFFK----L 86
           +R I  G IS   D + +   +G L+        F    CKS    + EAF  F     +
Sbjct: 34  HRPISPGPISLTKDTVSNAPDRGQLE-------NFLKSNCKSGHIKRSEAFSVFNHLIDM 86

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            P P +S+FN L+   A  K       + + +   GL  D      LI       KVD  
Sbjct: 87  QPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFG 146

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             V  EM+  G  PN  T+ +L+ G     ++++A G    M     +P+ V +  L+  
Sbjct: 147 LAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNG 206

Query: 207 CGQSGAVDRAFDVLAEM---NAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
              +G    A  +  EM   N      + P+ +    ++ +    G +D+ +E++  +  
Sbjct: 207 LCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKG 266

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I      Y+  I+    TG WE A  ++++M  +GV P+ V  + LID    AGK+E 
Sbjct: 267 RGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEE 326

Query: 323 AFEILQ-----------------------------------EAKNQGISVGIISYSSLMG 347
           A  +L+                                     +++GI    +SY+ L+ 
Sbjct: 327 ANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLIN 386

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
               +    +A +LY  M   ++ PTV T N L+T L    ++     +  +MK   L P
Sbjct: 387 GYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTP 446

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
            + TY+ILL    + + +   + L    +     P++ +F C+I G+C +R+ E AR L
Sbjct: 447 ESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIAREL 505



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 182/376 (48%), Gaps = 7/376 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           + L + G I +  +L  +M+ +G+      Y +    +C + +       F ++V    +
Sbjct: 246 DSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVH 305

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN+L+     +   E A  +L+L+ + G   D   Y TLI      G++D   ++
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M + GIE +  +Y  LI+G  K+G++ +A   Y  M  K + P  + +N L+T   +
Sbjct: 366 FVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFR 425

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V  A+++  EM  +VH + P+  T   L+        +  A E++  +  ++ + + 
Sbjct: 426 EGKVRDAWNLFGEM--KVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSI 483

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           +++   I+   +    E A  +++ ++ +G+ P+ +  + +I     +G++E A ++   
Sbjct: 484 QIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLG 543

Query: 330 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            + +G +  ++++++LM G C N +  QK +EL + M      P  ST++ ++  L   +
Sbjct: 544 MEEKGCAPNLVTFNTLMRGFCQNDE-MQKVVELLQEMAEKDFSPDASTISIVVDLLSKDE 602

Query: 389 QLPKTMEVLSDMKSLG 404
           +  + + +L    + G
Sbjct: 603 KYREYLHLLPTFPAQG 618



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/433 (22%), Positives = 183/433 (42%), Gaps = 14/433 (3%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVC---------KSQKAIKEAFRFFKLVPNP 90
           RISE   LL  M R G       Y      +C         K  + +      F +   P
Sbjct: 177 RISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKP 236

Query: 91  TLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            L  +  ++ S+C      +G    L + +  G+  D   Y+++I     +G+ +    +
Sbjct: 237 NLVCYCTIIDSLCKDGLIDKGKELFLEM-KGRGISPDVVAYSSIIHGMCHTGRWEGAKGL 295

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+EMV+ G+ PNV T+  LID   KAG++ +A     +M  +   PD   +N LI     
Sbjct: 296 FNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCL 355

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D A D+   M  E   ++ D ++   L+     +G++  A+++Y+ +    I  T 
Sbjct: 356 EGRIDDARDLFVSM--ESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTV 413

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +    + G    A +++ +M    + P+    + L+D       +  A E+   
Sbjct: 414 ITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHY 473

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            +N      I  ++ L+     A+  + A EL+  +    L+P V T   +I  LC   Q
Sbjct: 474 LENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQ 533

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L    ++   M+  G  PN +T++ L+    + D+++  + LL +  E    P+      
Sbjct: 534 LENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISI 593

Query: 450 IIGMCSRRYEKAR 462
           ++ + S+  EK R
Sbjct: 594 VVDLLSKD-EKYR 605



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
           +GH  + EA F +     +   +  I S+++L+GA +  K +   + LY+ M  I L P 
Sbjct: 68  SGHIKRSEA-FSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPD 126

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
             T+N LI   C+ +++   + VL +M   G  PNT+T++ L+        +     LL 
Sbjct: 127 FITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLR 186

Query: 434 QAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSG 474
           +    G  PN+V +  ++ G+C +     A  L+E +L+ N G
Sbjct: 187 KMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGG 229


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 127/559 (22%), Positives = 231/559 (41%), Gaps = 69/559 (12%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           G+ A + HDV       N L+ +   S+C  + E+M + G+                   
Sbjct: 110 GEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGI------------------- 150

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
                         P   +FN+L+   A ++ ++ A     +++    K D   +  L+ 
Sbjct: 151 -------------APNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVD 197

Query: 136 TCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
              K+G  +  FEVFHEM+  G + P+   + A++    KA +V +A   +G M      
Sbjct: 198 CLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFP 257

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD + +N +I    ++G    A  VL  M A+     P  +T G L+ +   AG ++RA 
Sbjct: 258 PDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKA--CVPTEVTYGILVNSLCKAGTLERAE 315

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E+++++     +    +YT  I+  +++G  + ACS++D+M + G  PD +  + +ID  
Sbjct: 316 ELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGL 375

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             +G  E A +  +E    G    +++Y++++   S       A  + + M +    P  
Sbjct: 376 CKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDS 435

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL-- 432
            T   L+   C   +L +  ++L ++      PN   YS L+        VE  L  L  
Sbjct: 436 VTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFE 495

Query: 433 -SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR 491
            S+A  + + P L     I+G+C     K   L+E                   A  +++
Sbjct: 496 QSKAAAETLDPGLCC-SIIVGLC-----KTGRLDE-------------------ACRIFQ 530

Query: 492 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL-----VENLGVSADALKRSNLCSLIDG 546
             +  G  P     + ++  L       +         +E +G   DA+  + LC  +  
Sbjct: 531 RMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCK 590

Query: 547 FGEYDPRAFSLLEEAASFG 565
            GE D RA  +LEEA+S G
Sbjct: 591 IGEVD-RAVKMLEEASSRG 608



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 121/571 (21%), Positives = 226/571 (39%), Gaps = 56/571 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPT 91
           L++  R+ E  ++   ME+ G       Y+     + K+   Q+A+K           PT
Sbjct: 235 LLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPT 294

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+ +L++    +   E A ++ R++  +G + +  +YT+LI   AKSG++     +F 
Sbjct: 295 EVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFD 354

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EMV AG  P+V T+  +IDG  K+G   +A  ++  M     KP+ V +  +I    + G
Sbjct: 355 EMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIG 414

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V  AF ++  M A  H   PD +T   L+      G++D A ++   + K +     ++
Sbjct: 415 RVANAFRIMKGMIA--HGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQL 472

Query: 272 YTIAIN------------------------------CCS------QTGDWEFACSVYDDM 295
           Y+  +N                              CCS      +TG  + AC ++  M
Sbjct: 473 YSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRM 532

Query: 296 TKKGVIPDEVFLSALID--FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
             +G  PD    + LI+        +VE AF +L + +  G     ++Y+ L        
Sbjct: 533 VSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIG 592

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
              +A+++ E   S      V    AL T LC   Q+ + + +  +M   G  P+   Y 
Sbjct: 593 EVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYC 652

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS--------RRYEKARTL 464
            ++    +   +E       +    G  P +  +  ++  +C          R+E     
Sbjct: 653 CIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLAR 712

Query: 465 NEHVLSFNSGRPQIENKWTSL----ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADI 520
            E V S       I     +L    AL ++ + I  G +PT    + +   L      + 
Sbjct: 713 GELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEK 772

Query: 521 RERLVENLGVSADALKRSNLCSLIDGFGEYD 551
            + L++ +         +   +++DG  + D
Sbjct: 773 AQELLQEMAAGGSPPHAATFTAILDGLRKSD 803



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 169/398 (42%), Gaps = 11/398 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L + GR++    +++ M   G       Y       CK  + + EA +      K   +P
Sbjct: 410 LSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR-LDEAAQLLDELDKCSSSP 468

Query: 91  TLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            L  ++ L++ +C      +    +    + A    D  L  ++I    K+G++D    +
Sbjct: 469 NLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRI 528

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           F  MV+ G +P+  TY  LI+G  ++   +V +AF     +      PD V +  L    
Sbjct: 529 FQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGL 588

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G VDRA  +L E  A     + D +   AL       GQVDRA  +++ + +     
Sbjct: 589 CKIGEVDRAVKMLEE--ASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   IN   +    E AC  +D+M  KG  P     +AL+    HAG V+ AF   
Sbjct: 647 DAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRF 706

Query: 328 QEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +    +G  VG ++ Y +L+     A     AL+L+E M S    PT  T  +L   L  
Sbjct: 707 ESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVR 766

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
             +  K  E+L +M + G  P+  T++ +L    + D+
Sbjct: 767 SGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDE 804



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 111/511 (21%), Positives = 197/511 (38%), Gaps = 81/511 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N L + G +    +L   M   G      +Y +      KS + +KEA   F ++V    
Sbjct: 303 NSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGR-MKEACSLFDEMVEAGY 361

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T  +++     S + E A +    +   G K +   YTT+I   +K G+V   F 
Sbjct: 362 RPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFR 421

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M+  G  P+  TY  L+DG  K G++ +A      +   +  P+  ++++L+    
Sbjct: 422 IMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLC 481

Query: 209 QSGAVDRAFDVLAEMN-AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
             G+V++  D L E + A    +DP  +    ++  C   G++D A  +++ +     K 
Sbjct: 482 DGGSVEKTLDDLFEQSKAAAETLDPG-LCCSIIVGLC-KTGRLDEACRIFQRMVSEGCKP 539

Query: 268 TPEVYTIAIN--CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
               Y I IN  C S+    E A ++  D+ K G +PD V  + L       G+V+ A +
Sbjct: 540 DATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVK 599

Query: 326 ILQEAKNQGISVGIISYSSL-MGACSNA-------------------------------- 352
           +L+EA ++G +  +++Y++L  G C                                   
Sbjct: 600 MLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLI 659

Query: 353 --KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT----------------- 393
             K  + A + ++ M     KPTV+T  AL+ ALC    + +                  
Sbjct: 660 KVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSV 719

Query: 394 -------------------MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
                              +++  DM S G  P  +T + L     R    E    LL +
Sbjct: 720 MIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQE 779

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
               G  P+   F  I+    +  E  + L 
Sbjct: 780 MAAGGSPPHAATFTAILDGLRKSDESGKLLK 810



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 158/346 (45%), Gaps = 13/346 (3%)

Query: 28  QLHS--YNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFF 84
           QL+S   N L   G + + +D L +  +     +D  +  +    +CK+ + + EA R F
Sbjct: 471 QLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGR-LDEACRIF 529

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           + + +    P  +T+N+L++    S+++  E AF +L  +++ G   D   YT L     
Sbjct: 530 QRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLC 589

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G+VD   ++  E  + G   +V  Y AL  G    GQV +A   +  M  +   PD  
Sbjct: 590 KIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAA 649

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +  +I    +   ++ A     EM  +     P   T  AL++A  +AG VD A   ++
Sbjct: 650 AYCCIINGLIKVKKLEDACKFFDEMIGKGQ--KPTVATYTALVQALCHAGNVDEAFHRFE 707

Query: 259 -MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            M+ +  + G+  +Y   I+   +    + A  +++DM  +G +P  V  ++L D    +
Sbjct: 708 SMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRS 767

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
           GK E A E+LQE    G      ++++++     +    K L+L +
Sbjct: 768 GKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQ 813


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 197/431 (45%), Gaps = 16/431 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L ++GR+S   +L   ++  G   +D   +    +   +    +EA   FK +      P
Sbjct: 183 LGKEGRVSSAANLFNGLQEDGF-SLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKP 241

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCAKSGKVDAMF 147
           TL T+N++++V    K      ++  LV++    G+  D   Y TLIT C +        
Sbjct: 242 TLITYNVILNVFG--KMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAA 299

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +VF EM  AG   +  TY AL+D   K+ +  +A      M      P  V +N+LI+A 
Sbjct: 300 QVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAY 359

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G +D A ++  +M  +     PD  T   L+     AG+V+ A  +++ +     K 
Sbjct: 360 ARDGMLDEAMELKNQMAEK--GTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKP 417

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               +   I      G +     ++D++   G+ PD V  + L+   G  G       + 
Sbjct: 418 NICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVF 477

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E K  G      ++++L+ A S   ++++A+ +Y  M    + P +ST N ++ AL  G
Sbjct: 478 KEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARG 537

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM-LLSQAKEDGVI-PNLV 445
               ++ +VL++M+     PN +TY  LL A    +  E+GLM  L++    GVI P  V
Sbjct: 538 GMWEQSEKVLAEMEDGRCKPNELTYCSLLHAY--ANGKEIGLMHSLAEEVYSGVIEPRAV 595

Query: 446 MFKCIIGMCSR 456
           + K ++ +CS+
Sbjct: 596 LLKTLVLVCSK 606



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/465 (22%), Positives = 204/465 (43%), Gaps = 13/465 (2%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN LI    R G + E ++L   M  KG    D   +    +  +    ++ A 
Sbjct: 346 SPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGT-KPDVFTYTTLLSGFERAGKVESAM 404

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F+ + N    P + TFN  + +  +        ++   +   GL  D   + TL+   
Sbjct: 405 NIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVF 464

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            ++G    +  VF EM  AG  P   T+  LI   ++ G   +A   Y  M    V PD 
Sbjct: 465 GQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDL 524

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             +N ++ A  + G  +++  VLAEM  E     P+ +T  +L+ A AN  ++     + 
Sbjct: 525 STYNTVLAALARGGMWEQSEKVLAEM--EDGRCKPNELTYCSLLHAYANGKEIGLMHSLA 582

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + ++   I+    +    +  CS+      A   + ++ ++G  PD   L++++   G  
Sbjct: 583 EEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRR 642

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
             V  A E+L   K +G +  + +Y+SLM   S + ++ K+ E+   + +  +KP + + 
Sbjct: 643 QMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISY 702

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N +I A C   ++     + S+M+  G+ P+ ITY+  + +       E  + ++    +
Sbjct: 703 NTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIK 762

Query: 438 DGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIEN 480
            G  PN   +  I+ G C   R ++A+   E + + +   P+ E+
Sbjct: 763 HGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAPKGED 807



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 162/369 (43%), Gaps = 13/369 (3%)

Query: 96  NMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           N ++++  S    EG    A  +   +QE G   D   YT+LI+  A SG+      VF 
Sbjct: 173 NSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFK 232

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           +M   G +P + TY  +++   K G    K       M+S  + PD   +N LIT C + 
Sbjct: 233 KMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRG 292

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TP 269
                A  V  EM A       D +T  AL+      G+  R +E  K++++  + G +P
Sbjct: 293 SLHQEAAQVFEEMKAA--GFSHDKVTYNALLDV---YGKSHRPKEAMKVLNEMELNGFSP 347

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
            +  Y   I+  ++ G  + A  + + M +KG  PD    + L+     AGKVE+A  I 
Sbjct: 348 SIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIF 407

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E +N G    I ++++ +    N   +   +++++ +    L P + T N L+      
Sbjct: 408 EEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQN 467

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
               +   V  +MK  G  P   T++ L+ A  R    E  + +  +  + GV P+L  +
Sbjct: 468 GMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTY 527

Query: 448 KCIIGMCSR 456
             ++   +R
Sbjct: 528 NTVLAALAR 536



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 142/330 (43%), Gaps = 6/330 (1%)

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG-IMRS 190
           +LI     SG++DA+     E      E       A + G     +   A  A+   M+ 
Sbjct: 105 SLIEPNFDSGQLDALLSELFEPFKDKPESTSSELLAFLKGLGFHKKFDLALCAFDWFMKQ 164

Query: 191 KNVKP--DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           K+ +   D  V   +I+  G+ G V  A ++   +  +   +D    T  +L+ A AN+G
Sbjct: 165 KDYQSMLDNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYT--SLISAFANSG 222

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFL 307
           +   A  V+K + +   K T   Y + +N   + G  W    S+ + M   G+ PD    
Sbjct: 223 RYREAVNVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTY 282

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + LI         + A ++ +E K  G S   ++Y++L+     +   ++A+++   M+ 
Sbjct: 283 NTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMEL 342

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
               P++ T N+LI+A      L + ME+ + M   G  P+  TY+ LL   ER   VE 
Sbjct: 343 NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
            + +  + +  G  PN+  F   I M   R
Sbjct: 403 AMNIFEEMRNAGCKPNICTFNAFIKMYGNR 432



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 29/246 (11%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           Y NGK     H ++E+++S                       G+++   V       VC 
Sbjct: 569 YANGKEIGLMHSLAEEVYS-----------------------GVIEPRAVLLKTLVLVCS 605

Query: 73  SQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
               + EA R F  +     +P ++T N ++S+    +    A +VL  ++E G      
Sbjct: 606 KCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMA 665

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            Y +L+   ++S       E+  E++  GI+P++ +Y  +I    +  ++  A   +  M
Sbjct: 666 TYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEM 725

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           R   + PD + +N  I +       + A  V+  M    H   P+  T  +++       
Sbjct: 726 RDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIK--HGCRPNQNTYNSIVDGYCKLN 783

Query: 249 QVDRAR 254
           + D A+
Sbjct: 784 RKDEAK 789


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 171/366 (46%), Gaps = 11/366 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    FN+LM       +   A  V   +Q  G++     + T+I+   ++G +D    +
Sbjct: 114 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 173

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M  AG+ P+V+TYGALI G  + G++  A G +  M  + +KP+ VVF  LI A  +
Sbjct: 174 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 233

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  +   ++  EM      V PD +T  A++     A  +  A  +   +    ++   
Sbjct: 234 KGDAETMLELHREMRE--RGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDT 291

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  I+   +  + + A  +  +M  +GV  DEV  +ALI     AG+   A  +L E
Sbjct: 292 VTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 351

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+     +Y+ ++ A     + +  L L + M++   KP V T N ++   C   Q
Sbjct: 352 MMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 411

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVA-CE--RKDDVEVGLMLLSQAKEDGVIPNLVM 446
           +     +L+ M ++G+ P+ ITY+ILL   C+  +  D+E     L  AK  G +P+L +
Sbjct: 412 MKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEE----LKSAK--GTVPDLGV 465

Query: 447 FKCIIG 452
           +  I+G
Sbjct: 466 YTSIVG 471



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 158/306 (51%), Gaps = 3/306 (0%)

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           + ++++AG+ P    +  L+    + G++A A   +  M+S+ V+   V FN +I+   +
Sbjct: 104 YLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCR 163

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +D A  +   M+     V PD  T GAL++     G+++ AR V++ +    +K   
Sbjct: 164 AGDLDGAETLHRRMSEA--GVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNA 221

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            V+TI I+   + GD E    ++ +M ++GV PD V  +A+++    A  +++A  I+ E
Sbjct: 222 VVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVE 281

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            ++ G+    ++Y++L+      +    A+E+ ++M +  +     T  ALI+ L    +
Sbjct: 282 MRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 341

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
                 VL +M   GL P+  TY++++ A  RK DV+ GL LL + +  G  P +V +  
Sbjct: 342 SADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNV 401

Query: 450 II-GMC 454
           I+ G C
Sbjct: 402 IMNGFC 407



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 152/336 (45%), Gaps = 3/336 (0%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           +AGL  + KL+  L+    + G++ +   VF EM + G+   V ++  +I G  +AG + 
Sbjct: 109 DAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLD 168

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            A   +  M    V PD   + ALI    + G ++ A  V  +M      + P+ +    
Sbjct: 169 GAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCG--RGMKPNAVVFTI 226

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+ A    G  +   E+++ + +  ++     Y   +N   +  D + A  +  +M   G
Sbjct: 227 LIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAG 286

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + PD V  + LID      +++ A EI Q    +G+ +  ++Y++L+   S A     A 
Sbjct: 287 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAE 346

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            +   M    L+P  +T   +I A C    +   + +L +M++ G  P  +TY++++   
Sbjct: 347 RVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGF 406

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            +   ++   MLL+     GV P+ + +  ++ G C
Sbjct: 407 CKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHC 442



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 113/238 (47%), Gaps = 3/238 (1%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P+      LM+     G++  A+ V+  +    ++ T   +   I+   + GD + A ++
Sbjct: 114 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 173

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           +  M++ GV PD     ALI      G++E A  + ++   +G+    + ++ L+ A   
Sbjct: 174 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 233

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
             + +  LEL+  M+   ++P   T NA++  LC    L     ++ +M+S GL P+T+T
Sbjct: 234 KGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVT 293

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---RRYEKARTLNE 466
           Y+ L+    +++++++ + +      +GV  + V +  +I   S   R  +  R L E
Sbjct: 294 YTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 351



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 35/164 (21%)

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           AC+ Y  +   G+ P+    + L+      G++ +A  +  E +++G+   ++S+++++ 
Sbjct: 100 ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMIS 159

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
               A +   A  L+  M    + P V T  ALI  LC   ++     V   M       
Sbjct: 160 GMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM------- 212

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                      C R                 G+ PN V+F  +I
Sbjct: 213 -----------CGR-----------------GMKPNAVVFTILI 228


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 199/430 (46%), Gaps = 13/430 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN +I    R G+ S+ + + ++M   G++     Y+       K    ++  FR    
Sbjct: 196 SYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGD-LEAGFRLRDQ 254

Query: 87  V----PNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +    P P + T+N+L+S +C + +  E    +  +   + +  D   Y+ L     ++G
Sbjct: 255 MLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHS-MFPDGFTYSILFDGLTRTG 313

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +   M  +F E +  G+    +T   L++G  K G+VAKA     ++    + P  V++N
Sbjct: 314 ESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYN 373

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    Q   +  AF +  +M +    + PDHIT  AL+        V +A ++   + 
Sbjct: 374 TLINGYCQVRDLRGAFCIFEQMKSR--HIRPDHITYNALINGLCKLEMVTKAEDLVMEME 431

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K  +  + E +   I+     G  E   +V  DM +KG+  D +   +++      GK+ 
Sbjct: 432 KSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIP 491

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  IL +   + ++     Y+S++ A   + + ++A  L E MK+  +  ++ T N L+
Sbjct: 492 EAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLL 551

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   Q+ +  E++  +++ GL P+ ++Y+ ++ AC  K D +  L LL +  + G+ 
Sbjct: 552 KGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIR 611

Query: 442 PNLVMFKCII 451
           P L  +  ++
Sbjct: 612 PTLRTYHTLV 621



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 192/408 (47%), Gaps = 18/408 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN L+    R GR+ E   L+++M    +      Y   F  + ++ ++ +     F  
Sbjct: 266 TYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGES-RTMLSLFAE 324

Query: 85  KLVPNPTLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            L     L  +    +L  +C   K ++ A QVL ++   GL     +Y TLI    +  
Sbjct: 325 SLKKGVMLGAYTCSILLNGLCKDGKVAK-AEQVLEMLVHTGLVPTTVIYNTLINGYCQVR 383

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +   F +F +M +  I P+  TY ALI+G  K   V KA      M    V P    FN
Sbjct: 384 DLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFN 443

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MI 260
            LI A G +G +++ F VL++M  +   +  D I+ G+++KA    G++  A  +   MI
Sbjct: 444 TLIDAYGTAGQLEKCFTVLSDMQQK--GIKSDVISFGSVVKAFCKNGKIPEAVAILDDMI 501

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
           +K ++    +VY   I+   ++GD E A  + + M   GV    V  + L+     + ++
Sbjct: 502 YK-DVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQI 560

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A E++   +NQG+   ++SY++++ AC N  +  KALEL + M    ++PT+ T + L
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 620

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACERKDDV 425
           ++AL    ++     +   M    + P++  Y I++   V CE    V
Sbjct: 621 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRCENDSKV 668



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 110/472 (23%), Positives = 203/472 (43%), Gaps = 51/472 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLV--QEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P    +N ++  C ++ D + A  ++R +   E     D   Y  +I    +SGK     
Sbjct: 155 PDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 214

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +VF EMV+ G+ PN  TY  +IDG  K G +   F     M     KP+ V +N L++  
Sbjct: 215 KVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGL 274

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHIT------------------------------I 237
            ++G +D    ++ EM +  H + PD  T                              +
Sbjct: 275 CRAGRMDETRVLMDEMAS--HSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVML 332

Query: 238 GA-----LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           GA     L+      G+V +A +V +M+    +  T  +Y   IN   Q  D   A  ++
Sbjct: 333 GAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIF 392

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           + M  + + PD +  +ALI+       V  A +++ E +  G+   + ++++L+ A   A
Sbjct: 393 EQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTA 452

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
              +K   +   M+   +K  V +  +++ A C   ++P+ + +L DM    + PN   Y
Sbjct: 453 GQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVY 512

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA--------- 461
           + ++ A     D E   +L+ + K  GV  ++V +  ++ G+C S + ++A         
Sbjct: 513 NSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRN 572

Query: 462 RTLNEHVLSFNSGRPQIENKW-TSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
           + L   V+S+N+      NK  T  AL + +E    G  PT+     ++  L
Sbjct: 573 QGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSAL 624



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/296 (19%), Positives = 122/296 (41%), Gaps = 1/296 (0%)

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P++ +   L++     G+ A    A+G++ +   +PD   +N ++ AC  +G +D A  +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           +  M        PD  +   ++     +G+   A +V+  +    +      Y   I+  
Sbjct: 180 VRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGH 239

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            + GD E    + D M   G  P+ V  + L+     AG+++    ++ E  +  +    
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDG 299

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            +YS L    +     +  L L+       +     T + L+  LC   ++ K  +VL  
Sbjct: 300 FTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEM 359

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +   GL P T+ Y+ L+    +  D+     +  Q K   + P+ + +  +I G+C
Sbjct: 360 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLC 415


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 164/365 (44%), Gaps = 2/365 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +  ++ +M       + E    V   ++E G       Y  LI   AK GK+    EV  
Sbjct: 446 IDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSK 505

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M +AGI+ N+ TY  LI+G  K    A AF  +  +    +KPD V++N +I A    G
Sbjct: 506 MMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMG 565

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA  ++ EM  E H   P   T   ++   A AG++ RA +V+ M+ +     T   
Sbjct: 566 TMDRAICMVKEMQKERH--RPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHT 623

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   I    +    E A  + D+M   GV P+E   + ++      G    AFE   + +
Sbjct: 624 FNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLR 683

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           ++G+ + + +Y +L+ AC  +   Q AL + + M +  +       N LI        + 
Sbjct: 684 DEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVW 743

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  MK  G+ P+  TY+  + AC +  D+     ++ + +  GV PN+  +  +I
Sbjct: 744 EAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLI 803

Query: 452 GMCSR 456
              +R
Sbjct: 804 HGWAR 808



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 148/327 (45%), Gaps = 2/327 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ML++     KD   AF +   V + GLK D  LY  +I      G +D    +  
Sbjct: 516 MKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVK 575

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM      P   T+  +I G A+AG++ +A   + +MR     P    FNALI    +  
Sbjct: 576 EMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKR 635

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +++A ++L EM   +  V P+  T   +M   A  G   +A E +  +    ++     
Sbjct: 636 QMEKAIEILDEM--ALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYT 693

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++Q+ K
Sbjct: 694 YEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 753

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+   I +Y+S + AC  A +  +A ++ E M++  +KP V T   LI          
Sbjct: 754 QGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPE 813

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVA 418
           K +    +MK  GL P+   Y  L+ A
Sbjct: 814 KALRCFQEMKLAGLKPDKAVYHCLMTA 840



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 168/359 (46%), Gaps = 3/359 (0%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           NM+ + C +  + + A  ++R ++  G+ A   +Y T++      G  +    VF  +  
Sbjct: 416 NMIYAYCQTC-NMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKE 474

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G  P+V +YG LI+  AK G+++KA     +M S  +K +   ++ LI    +      
Sbjct: 475 CGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWAN 534

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           AF +  ++  +   + PD +    +++A    G +DRA  + K + K   + T   +   
Sbjct: 535 AFAIFEDVVKD--GLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPI 592

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+  ++ G+ + A  V+D M + G IP     +ALI       ++E A EIL E    G+
Sbjct: 593 IHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGV 652

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           S    +Y+++M   +   +  KA E +  ++   L+  V T  AL+ A C   ++   + 
Sbjct: 653 SPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALA 712

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           V  +M +  +  NT  Y+IL+    R+ DV     L+ Q K+ GV P++  +   I  C
Sbjct: 713 VTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINAC 771



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 182/404 (45%), Gaps = 33/404 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+   + +++S  A   D   A Q    ++  G++    +YT+LI   A    +
Sbjct: 298 FERIKKPSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDM 357

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +       +M   G+E ++ TY  ++ G AK G    A   +   + ++   + +++  +
Sbjct: 358 EEALSCARKMKEEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNM 417

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  Q+  +D+A  ++ EM  E    P+D                              
Sbjct: 418 IYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGF 477

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  ++ G L+   A  G++ +A EV KM+    IK   + Y++ IN   +  DW  A +
Sbjct: 478 APSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFA 537

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +++D+ K G+ PD V  + +I      G ++ A  +++E + +       ++  ++   +
Sbjct: 538 IFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFA 597

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A   ++AL++++ M+     PTV T NALI  L +  Q+ K +E+L +M   G+ PN  
Sbjct: 598 RAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEH 657

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+ ++       D        ++ +++G+  ++  ++ ++  C
Sbjct: 658 TYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKAC 701



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 12/201 (5%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAF 81
           H  +  +H Y  L   G+  E    L D   +GL LD+   Y A     CKS + ++ A 
Sbjct: 657 HTYTTIMHGYAALGDTGKAFEYFTKLRD---EGLQLDV-YTYEALLKACCKSGR-MQSAL 711

Query: 82  RFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              K      +P  T   +N+L+   A   D   A  +++ +++ G+K D   YT+ I  
Sbjct: 712 AVTKEMSAQNIPRNTF-VYNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINA 770

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
           C K+G +    ++  EM  +G++PNV TY  LI G A+A    KA   +  M+   +KPD
Sbjct: 771 CCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPD 830

Query: 197 RVVFNALITACGQSGAVDRAF 217
           + V++ L+TA      V  A+
Sbjct: 831 KAVYHCLMTALLSRATVTEAY 851



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 36/171 (21%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M++ G+                     
Sbjct: 719 AQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQGGV--------------------- 757

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   ++ C  + D   A +++  ++ +G+K + K YTTLI   
Sbjct: 758 -----------KPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGW 806

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           A++   +     F EM  AG++P+   Y  L+        V +A+   GI+
Sbjct: 807 ARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLSRATVTEAYVRPGIL 857



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/185 (18%), Positives = 79/185 (42%)

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + ++  ++ GD   A   ++ M  +G+ P     ++LI        +E A    ++ K
Sbjct: 309 YGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMK 368

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+ + +++YS ++G  +   N   A   ++  K             +I A C    + 
Sbjct: 369 EEGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCNMD 428

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   ++ +M+  G+      Y  ++       + E  L +  + KE G  P++V + C+I
Sbjct: 429 QAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLI 488

Query: 452 GMCSR 456
            + ++
Sbjct: 489 NLYAK 493


>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 890

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 125/484 (25%), Positives = 216/484 (44%), Gaps = 41/484 (8%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +HS++ +I    R GR  + +DL   M   G++     Y++      K + +     +F+
Sbjct: 248 VHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFY 307

Query: 85  -KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +++ N   P   T+N L+SVCAS    E A ++L  +    +  D   Y T + T  K+
Sbjct: 308 DEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKA 367

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G++D    VF EM +  + PNV TY A++DG AKA  +  A   Y  M+ ++V  DRV +
Sbjct: 368 GQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSY 427

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N L+    + G +D A +   EM  E   ++ D +T  AL+      G  D  R +++ +
Sbjct: 428 NTLVGIYEKLGNLDEAIEKCKEM--ERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEM 485

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
              NI      Y+  I+  ++   ++ A  VY +     +  D VF SA+ID     G +
Sbjct: 486 KARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGLM 545

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E++  +L     +GI   +++++S++ A   +      LE   +  S  +   +   + +
Sbjct: 546 ESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSP----TLEYGVNGSSDAIDYPIEQSSPI 601

Query: 381 ITALCDG--------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           +    DG        D++ K  E L+  K+  L  N             + D    L L 
Sbjct: 602 V---IDGAFQNKPGEDRILKMFEQLAAEKAGHLKKNR----------SGRQDKHCILWLF 648

Query: 433 SQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 490
            +  E  + PN+V F  I+  CS    YE A  L + +  F++    + N      LM Y
Sbjct: 649 QKMHELNIKPNVVTFSAILNACSLCNSYEDASLLLDTLRLFDNQVYGVTNG----LLMGY 704

Query: 491 REAI 494
           RE +
Sbjct: 705 REQV 708



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/344 (25%), Positives = 165/344 (47%), Gaps = 8/344 (2%)

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
           G F+  RL    G  +    ++ +I+   ++G+     ++F  M + G+ PNV TY ++I
Sbjct: 234 GLFERARL---EGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSII 290

Query: 170 DGCAKAGQVA--KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           D  AK G+V+       Y  M +  + PDR+ +N+L++ C   G  + A  +L+EM+   
Sbjct: 291 DAGAK-GEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRC 349

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD  T    +     AGQ+D AR V++ +    +      Y+  ++  ++    E 
Sbjct: 350 --IVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLED 407

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A ++Y++M  + V  D V  + L+      G ++ A E  +E +  GI+  +++Y++L+ 
Sbjct: 408 ALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLS 467

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                  + +   L+E MK+  + P   T + +I     G+   + M+V  + K   L  
Sbjct: 468 GYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEI 527

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + + YS ++    +   +E  +MLL    E G+ PN+V F  II
Sbjct: 528 DVVFYSAIIDTLCKNGLMESSIMLLMAMMEKGIKPNVVTFNSII 571



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 115/236 (48%), Gaps = 11/236 (4%)

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           + A++      G+++ A  +++         T   ++  I+   + G +  A  ++  M+
Sbjct: 216 VSAMIGTLGRLGEINLALGLFERARLEGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSMS 275

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI----ISYSSLMGACSNA 352
             GV+P+ +  +++ID AG  G+V  +F+++ +  ++ I+ G+    ++Y+SL+  C++ 
Sbjct: 276 SWGVVPNVITYNSIID-AGAKGEV--SFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASK 332

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
             W+ A +L   M    + P V T N  +  LC   Q+     V  +M S  + PN +TY
Sbjct: 333 GMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTY 392

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
           S ++    + + +E  L L  + K   V  + V +  ++G+    YEK   L+E +
Sbjct: 393 SAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGI----YEKLGNLDEAI 444


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 199/446 (44%), Gaps = 15/446 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G+    +++++DM R  +      Y+    N C S    KEA    K 
Sbjct: 199 TYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYN-NLINACGSSGNWKEALNVCKK 257

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P L T N+++S                L++   ++ D      +I    K G+
Sbjct: 258 MTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQ 317

Query: 143 VDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
                ++F+ M     E  P+V T+  +I   +  GQ+     A+  M ++ +KP+ V +
Sbjct: 318 NGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSY 377

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           NALI A    G    AF V  E+    +   PD ++  +L+ A   +G+ ++A +V++++
Sbjct: 378 NALIGAYASHGMDKEAFSVFNEIKK--NGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELM 435

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            + + K     Y   I+     G    A  +  +M + GV P+ V +  L+   G  G+ 
Sbjct: 436 RRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQK 495

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
                +L  A+ +GI +   +Y+S +G+  +   + KAL LY  M++ K+KP   T N L
Sbjct: 496 VKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVL 555

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I+  C   +  + +  L +M  L +  +   YS ++ A  ++  V     + ++ K  G 
Sbjct: 556 ISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGC 615

Query: 441 IPNLVMFKCIIGM--CSRRYEKARTL 464
            P+++ +  +I     +  +EKA  L
Sbjct: 616 RPDVITYTAMIHAYDVAENWEKASAL 641



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 165/365 (45%), Gaps = 5/365 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T +T   L SVC   ++ + AF  +      GLK +   Y  LI   A  G     F VF
Sbjct: 341 TFTTIIHLYSVCGQIENCQTAFNTM---LAEGLKPNIVSYNALIGAYASHGMDKEAFSVF 397

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           +E+   G  P+V +Y +L++   K+G+  KA   + +MR  + KP+ V +NALI A G  
Sbjct: 398 NEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSK 457

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +  A ++L EM  E + V P+ ++I  L+ AC   GQ  + + V        IK    
Sbjct: 458 GLLTEAVEILHEM--ERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTT 515

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y  AI      G+++ A S+Y  M  K V PD V  + LI       K   A   L E 
Sbjct: 516 AYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEM 575

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            +  I +    YSS++ A S      +A  ++  MK +  +P V T  A+I A    +  
Sbjct: 576 MDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENW 635

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            K   +  +M++  + P++I  S L+ A  +       L+L    +E  +  N   F  +
Sbjct: 636 EKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEM 695

Query: 451 IGMCS 455
           +  CS
Sbjct: 696 VSACS 700



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 167/396 (42%), Gaps = 42/396 (10%)

Query: 109 EGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           E + QV R ++ +    A   +Y  +I   A+   VD    +F EM     +P+  TY A
Sbjct: 143 EHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNA 202

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           LI+   +AGQ   A      M    + P R  +N LI ACG SG    A +V  +M    
Sbjct: 203 LINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTE-- 260

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
           + V PD +T   ++ A     Q  +    ++++   NI+       I I C  + G    
Sbjct: 261 NGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGK 320

Query: 288 ACSVYDDMTKK-------------------------------------GVIPDEVFLSAL 310
           A  +++ M +K                                     G+ P+ V  +AL
Sbjct: 321 AIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNAL 380

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I      G  + AF +  E K  G    ++SY+SL+ A   +   +KA++++E M+    
Sbjct: 381 IGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHC 440

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           KP + + NALI A      L + +E+L +M+  G+ PN ++   LL AC R         
Sbjct: 441 KPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKS 500

Query: 431 LLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 464
           +LS A+  G+  N   +   IG  +    Y+KA +L
Sbjct: 501 VLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSL 536



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 194/463 (41%), Gaps = 19/463 (4%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + SYN LI      G   E   +  ++++ G    D V +    N        
Sbjct: 367 AEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGF-HPDVVSYTSLLNAYGKSGKP 425

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           ++A + F+L+      P L ++N L+    S      A ++L  ++  G++ +     TL
Sbjct: 426 EKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTL 485

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +  C + G+   +  V       GI+ N   Y + I      G+  KA   Y  MR+K V
Sbjct: 486 LAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKV 545

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KPD V +N LI+ C +      A   L EM     P+  +     +++ A +  GQV  A
Sbjct: 546 KPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKE--VYSSVICAYSKQGQVTEA 603

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI-- 311
             ++  +     +     YT  I+      +WE A +++ +M    V PD +  S+L+  
Sbjct: 604 ESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRA 663

Query: 312 -DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
            +  G   KV    E ++E K   I     S+  ++ ACS  + W++ + L + M+    
Sbjct: 664 FNKGGQPAKVLVLAEFMREKK---IPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSIS 720

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
             ++  +N L+  L    ++   M++   + + G   N  TYSILL       +    + 
Sbjct: 721 VVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIE 780

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSRRY--EKARTLNEHVLSF 471
           +L   +E G+ P++ M++ I      R   E A  + E + S 
Sbjct: 781 VLQWMEEAGLQPSVGMYRSISSFAQNRSGAEYAAVIQERIESL 823



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 118/258 (45%), Gaps = 3/258 (1%)

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           R  F  LI    Q G+++ +  V   M  + +    + I    +++  A    VD+AR +
Sbjct: 126 RKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDI-YNMMIRLHARHNIVDQARGL 184

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  + K+  K   E Y   IN   + G W +A ++ DDM +  + P     + LI+  G 
Sbjct: 185 FFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGS 244

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           +G  + A  + ++    G+   +++++ ++ A      + K L  +E MK   ++P  +T
Sbjct: 245 SGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTT 304

Query: 377 MNALITALCDGDQLPKTMEVLSDMK-SLGLC-PNTITYSILLVACERKDDVEVGLMLLSQ 434
           +N +I  L    Q  K +++ + MK     C P+ +T++ ++        +E      + 
Sbjct: 305 LNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNT 364

Query: 435 AKEDGVIPNLVMFKCIIG 452
              +G+ PN+V +  +IG
Sbjct: 365 MLAEGLKPNIVSYNALIG 382



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A  L+  M+  + KP   T NALI A     Q    M ++ DM    + P+  TY+ L+
Sbjct: 180 QARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLI 239

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG-R 475
            AC    + +  L +  +  E+GV P+LV    ++    R  + ++ L+   L   +  R
Sbjct: 240 NACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIR 299

Query: 476 PQIENKWTSLALMVY 490
           P      T+L +++Y
Sbjct: 300 PDT----TTLNIVIY 310


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 121/505 (23%), Positives = 221/505 (43%), Gaps = 56/505 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC--------------------- 71
           N L  +GR+ E +D+LE+M  KG+      Y      +C                     
Sbjct: 276 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 335

Query: 72  -----------------KSQKAIKEAFRFFK--LVPNPTLSTFNMLMS-VCASSKDSEGA 111
                            K + AI    +  K  LVPN    T+N L++ +C   + S  A
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTV--TYNALINELCVGGRFST-A 392

Query: 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171
            ++   ++  G  A+ + Y  +I      G ++    +F +M+  G  P V TY  LI+G
Sbjct: 393 LKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLING 452

Query: 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
               G V  A     +M+    +PD   +N L++   + G ++ A     EM  E   ++
Sbjct: 453 YLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM-VEC-GLN 510

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P+ ++  AL+   +  G+VD A  + K + +       E Y   IN  S+   +  A  +
Sbjct: 511 PNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKI 570

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS 350
            D M ++G++P+ +  + LID     G+ + AF+I  + + +     + +YSSL+ G C 
Sbjct: 571 CDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQ 630

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
             K  +      E M  I  +PT+ T + L++ LC   +  +  +++ DMK  G CP+  
Sbjct: 631 EGKADEA-----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDRE 685

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV 468
            Y  LL+A  +  +V+  L +    +  G   +L +++ +I  +C + + E+A+ L +++
Sbjct: 686 IYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNM 745

Query: 469 LSFNSGRPQIENKWTSLALMVYREA 493
           L       +I   WT L   + +E 
Sbjct: 746 LEKEWNADEI--VWTVLVDGLLKEG 768



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 180/429 (41%), Gaps = 44/429 (10%)

Query: 67  FFNVCKSQKAIKEA----FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEA 121
             N+   +  ++EA     + F+   +P + T+  L+     +++ + AF V  R+V+E 
Sbjct: 204 LINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKE- 262

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--------------------- 160
           G   +   Y+TLI      G+VD   ++  EM+  GIEP                     
Sbjct: 263 GCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEA 322

Query: 161 --------------NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
                         NV TY ALI G ++ G++  A G Y  M  + + P+ V +NALI  
Sbjct: 323 IELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINE 382

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
               G    A  +   M  E H    +  T   ++K     G +++A  +++ + K    
Sbjct: 383 LCVGGRFSTALKIFHWM--EGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPL 440

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            T   Y   IN     G+   A  + D M + G  PDE   + L+      GK+E+A   
Sbjct: 441 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 500

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            QE    G++   +SY++L+   S       AL L + M+ +   P V + NA+I  L  
Sbjct: 501 FQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSK 560

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
            ++  +  ++   M   GL PN ITY+ L+    R    +    +    ++   +PNL  
Sbjct: 561 ENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYT 620

Query: 447 FKCII-GMC 454
           +  +I G+C
Sbjct: 621 YSSLIYGLC 629



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 194/456 (42%), Gaps = 34/456 (7%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY-- 63
           ++++QF Y   K   Y H+++  +   NRL+R                      D+V+  
Sbjct: 89  ESVIQFFYWISKRPFYKHNMNCFISMLNRLVR----------------------DRVFAP 126

Query: 64  --HARFFNV--CKSQKAIKEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVL 115
             H R   +  C++++ I+    F   +       +L + N L+   A  +  EGA  + 
Sbjct: 127 ADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLY 186

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           + +  +G++     + TLI   +K GKV     +  ++    + P+V TY +LI G  + 
Sbjct: 187 KQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRN 246

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
             +  AFG +  M  +   P+ V ++ LI      G VD A D+L EM  +   ++P   
Sbjct: 247 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK--GIEPTVY 304

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T    + A       + A E+   + K   +   + YT  I+  S+ G  E A  +Y  M
Sbjct: 305 TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM 364

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            K+G++P+ V  +ALI+     G+   A +I    +  G      +Y+ ++       + 
Sbjct: 365 LKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDI 424

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           +KA+ L+E M  +   PTV T N LI        +     +L  MK  G  P+  TY+ L
Sbjct: 425 EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 484

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +    +   +E       +  E G+ PN V +  +I
Sbjct: 485 VSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALI 520



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 194/427 (45%), Gaps = 19/427 (4%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +YN LI +    GR S  + +   ME  G L   + Y+     +C     +KA+    + 
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+ P PT+ T+N L++   +  +   A ++L L++E G + D   Y  L++  +K GK+
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           ++    F EMV  G+ PN  +Y ALIDG +K G+V  A      M      P+   +NA+
Sbjct: 495 ESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAV 554

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    +      A  +  +M  +   + P+ IT   L+      G+   A +++  + K 
Sbjct: 555 INGLSKENRFSEAEKICDKMVEQ--GLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR 612

Query: 264 NIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
             K  P +YT +  I    Q G  + A    + M++ G  P     S L+      G+  
Sbjct: 613 --KCLPNLYTYSSLIYGLCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFY 666

Query: 322 AAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            A +++++ K +G      I YS L+  C N +    AL+++  +++   +  +S   AL
Sbjct: 667 EAEQLVKDMKERGFCPDREIYYSLLIAHCKNLE-VDHALKIFHSIEAKGFQLHLSIYRAL 725

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I ALC   Q+ +   +  +M       + I +++L+    ++ ++++ + LL   +    
Sbjct: 726 ICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNF 785

Query: 441 IPNLVMF 447
            PN+  +
Sbjct: 786 TPNIQTY 792


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 171/366 (46%), Gaps = 11/366 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    FN+LM       +   A  V   +Q  G++     + T+I+   ++G +D    +
Sbjct: 238 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 297

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M  AG+ P+V+TYGALI G  + G++  A G +  M  + +KP+ VVF  LI A  +
Sbjct: 298 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 357

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  +   ++  EM      V PD +T  A++     A  +  A  +   +    ++   
Sbjct: 358 KGDAETMLELHREMRER--GVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDT 415

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  I+   +  + + A  +  +M  +GV  DEV  +ALI     AG+   A  +L E
Sbjct: 416 VTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 475

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+     +Y+ ++ A     + +  L L + M++   KP V T N ++   C   Q
Sbjct: 476 MMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 535

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVA-CE--RKDDVEVGLMLLSQAKEDGVIPNLVM 446
           +     +L+ M ++G+ P+ ITY+ILL   C+  +  D+E     L  AK  G +P+L +
Sbjct: 536 MKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTDIEE----LKSAK--GTVPDLGV 589

Query: 447 FKCIIG 452
           +  I+G
Sbjct: 590 YTSIVG 595



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 158/306 (51%), Gaps = 3/306 (0%)

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           + ++++AG+ P    +  L+    + G++A A   +  M+S+ V+   V FN +I+   +
Sbjct: 228 YLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCR 287

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +D A  +   M+     V PD  T GAL++     G+++ AR V++ +    +K   
Sbjct: 288 AGDLDGAETLHRRMSEA--GVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNA 345

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            V+TI I+   + GD E    ++ +M ++GV PD V  +A+++    A  +++A  I+ E
Sbjct: 346 VVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVE 405

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            ++ G+    ++Y++L+      +    A+E+ ++M +  +     T  ALI+ L    +
Sbjct: 406 MRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 465

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
                 VL +M   GL P+  TY++++ A  RK DV+ GL LL + +  G  P +V +  
Sbjct: 466 SADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNV 525

Query: 450 II-GMC 454
           I+ G C
Sbjct: 526 IMNGFC 531



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 152/336 (45%), Gaps = 3/336 (0%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           +AGL  + KL+  L+    + G++ +   VF EM + G+   V ++  +I G  +AG + 
Sbjct: 233 DAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLD 292

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            A   +  M    V PD   + ALI    + G ++ A  V  +M      + P+ +    
Sbjct: 293 GAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGR--GMKPNAVVFTI 350

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+ A    G  +   E+++ + +  ++     Y   +N   +  D + A  +  +M   G
Sbjct: 351 LIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAG 410

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + PD V  + LID      +++ A EI Q    +G+ +  ++Y++L+   S A     A 
Sbjct: 411 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAE 470

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            +   M    L+P  +T   +I A C    +   + +L +M++ G  P  +TY++++   
Sbjct: 471 RVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGF 530

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            +   ++   MLL+     GV P+ + +  ++ G C
Sbjct: 531 CKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHC 566



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 113/238 (47%), Gaps = 3/238 (1%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P+      LM+     G++  A+ V+  +    ++ T   +   I+   + GD + A ++
Sbjct: 238 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 297

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           +  M++ GV PD     ALI      G++E A  + ++   +G+    + ++ L+ A   
Sbjct: 298 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 357

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
             + +  LEL+  M+   ++P   T NA++  LC    L     ++ +M+S GL P+T+T
Sbjct: 358 KGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVT 417

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---RRYEKARTLNE 466
           Y+ L+    +++++++ + +      +GV  + V +  +I   S   R  +  R L E
Sbjct: 418 YTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 475



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/164 (20%), Positives = 62/164 (37%), Gaps = 35/164 (21%)

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           AC+ Y  +   G+ P+    + L+      G++ +A  +  E +++G+   ++S+++++ 
Sbjct: 224 ACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMIS 283

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
               A +   A  L+  M    + P V T  ALI  LC   ++     V   M       
Sbjct: 284 GMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM------- 336

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                      C R                 G+ PN V+F  +I
Sbjct: 337 -----------CGR-----------------GMKPNAVVFTILI 352


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 185/437 (42%), Gaps = 25/437 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA------ 80
           +YN LI    R   I + ++L+  M + G       Y + F N     +++  +      
Sbjct: 199 TYNALIGACARNNDIEKALNLIAKMRQDG-------YQSDFVNYSLVIQSLTRSNKIDSV 251

Query: 81  --FRFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
              R +K +    L       N ++   A S D   A Q+L + Q  GL A      ++I
Sbjct: 252 MLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSII 311

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +  A SG+      +F E+  +GI+P    Y AL+ G  K G +  A      M  + V 
Sbjct: 312 SALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVS 371

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD   ++ LI A   +G  + A  VL EM  E   V P+      L+    + G+  +  
Sbjct: 372 PDEHTYSLLIDAYVNAGRWESARIVLKEM--EAGDVQPNSFVFSRLLAGFRDRGEWQKTF 429

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           +V K +    +K   + Y + I+   +    + A + +D M  +G+ PD V  + LID  
Sbjct: 430 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 489

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G+   A E+ +  + +G      +Y+ ++ +  + + W     L   MKS  + P V
Sbjct: 490 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 549

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T   L+       +    +E L +MKS+GL P++  Y+ L+ A  ++   E  +     
Sbjct: 550 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 609

Query: 435 AKEDGVIPNLVMFKCII 451
              DG+ P+L+    +I
Sbjct: 610 MTSDGLKPSLLALNSLI 626



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 155/337 (45%), Gaps = 2/337 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+     +   + A  ++  +++ G+  D   Y+ LI     +G+ ++   V
Sbjct: 337 PRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIV 396

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM    ++PN   +  L+ G    G+  K F     M+S  VKPDR  +N +I   G+
Sbjct: 397 LKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 456

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A      M +E   ++PD +T   L+      G+   A E+++ + +       
Sbjct: 457 FNCLDHAMTTFDRMLSE--GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCA 514

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN       W+    +   M  +G++P+ V  + L+D  G +G+   A E L+E
Sbjct: 515 TTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEE 574

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K+ G+      Y++L+ A +     ++A+  +  M S  LKP++  +N+LI A  +  +
Sbjct: 575 MKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRR 634

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
             +   VL  MK  G+ P+ +TY+ L+ A  R D  +
Sbjct: 635 DAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQ 671



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 124/544 (22%), Positives = 214/544 (39%), Gaps = 126/544 (23%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           LY+ LI    +S K   ++E F       + P   TY ALI  CA+   + KA      M
Sbjct: 169 LYSILIHALGRSEK---LYEAFLLSQKQTLTP--LTYNALIGACARNNDIEKALNLIAKM 223

Query: 189 RSKNVKPDRVVFNALITACGQSGAVD-----RAFDVLA--EMNAEVHPV----------- 230
           R    + D V ++ +I +  +S  +D     R +  +   ++  +V  V           
Sbjct: 224 RQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSG 283

Query: 231 DPDH-----------------ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           DP                    T+ +++ A A++G+   A  +++ + +  IK     Y 
Sbjct: 284 DPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYN 343

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             +    +TG  + A S+  +M K+GV PDE   S LID   +AG+ E+A  +L+E +  
Sbjct: 344 ALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAG 403

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            +      +S L+    +   WQK  ++ + MKSI +KP     N +I      + L   
Sbjct: 404 DVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHA 463

Query: 394 MEVLSDMKSLGLCPNTITYSILL------------------------VAC---------- 419
           M     M S G+ P+ +T++ L+                        + C          
Sbjct: 464 MTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINS 523

Query: 420 ----ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 475
               ER DD++    LL + K  G++PN+V    ++ +    Y K+   N+         
Sbjct: 524 YGDQERWDDMK---RLLGKMKSQGILPNVVTHTTLVDV----YGKSGRFND--------- 567

Query: 476 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV-SADA 534
                     A+    E    G  P+  + + ++          + E+ V    V ++D 
Sbjct: 568 ----------AIECLEEMKSVGLKPSSTMYNALINAYA---QRGLSEQAVNAFRVMTSDG 614

Query: 535 LKRSNLC--SLIDGFGE--YDPRAFSLLEEAASFGIVPCV--------------SFKEIP 576
           LK S L   SLI+ FGE   D  AF++L+     G+ P V               F+++P
Sbjct: 615 LKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVP 674

Query: 577 VVVD 580
           VV +
Sbjct: 675 VVYE 678


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 126/520 (24%), Positives = 211/520 (40%), Gaps = 69/520 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN LM     +     A  +L  +   G+  D   +TTL+    + G ++A   V
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M+  G      T   LI+G  K G+V  A G      +   +PD++ +N  +    Q
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQ 298

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR--------------- 254
           +  V  A  V+  M  E H  DPD  T   ++      GQ++ A+               
Sbjct: 299 NDHVGHALKVMDVMVQEGH--DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 255 -----------------EVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDD 294
                            E   +  +  +KG +P+VYT  I IN   + GD   A  ++++
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G  PDEV  + LID     GK+  A ++L++ ++ G     I+Y++++        
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++A E+++ M    +     T N LI  LC   ++     +++ M S GL PN ITY+ 
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNS 536

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 473
           +L    ++ D++    +L     +G   ++V +  +I G+C                  +
Sbjct: 537 ILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCK-----------------A 579

Query: 474 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE-----RLVENL 528
           GR Q+       AL V R   + G  PT +  + VL  L    N  IR+     R +  +
Sbjct: 580 GRTQV-------ALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNN--IRDALSLFREMAEV 630

Query: 529 GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
           G   DAL    +   +   G     AF  + E    G +P
Sbjct: 631 GEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIP 670



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 157/370 (42%), Gaps = 34/370 (9%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G++AD  +Y  L+    +  K+  +  V+ EM   GI+P+V T+  L+    +A QV  A
Sbjct: 141 GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 200

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA---EMNAEVHPV-------- 230
                 M S+ V PD   F  L+    + G+++ A  V A   EM      V        
Sbjct: 201 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 260

Query: 231 ----------------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                                 +PD IT    +        V  A +V  ++ +      
Sbjct: 261 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 320

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I +NC  + G  E A  + + M  +G +PD    + LI       ++E A ++ +
Sbjct: 321 VFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLAR 380

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +   +G+S  + +++ L+ A     +   AL L+E MK+    P   T N LI  LC   
Sbjct: 381 QVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLG 440

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L K +++L DM+S G   +TITY+ ++    +K  +E    +  Q    G+  N + F 
Sbjct: 441 KLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFN 500

Query: 449 CII-GMCSRR 457
            +I G+C  +
Sbjct: 501 TLIDGLCKDK 510



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/417 (18%), Positives = 179/417 (42%), Gaps = 8/417 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLST 94
           GR+ + +  ++     G  + D++ +  F N       +  A +   ++     +P + T
Sbjct: 265 GRVEDALGYIQQEIADGF-EPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFT 323

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N++++    +   E A  +L  + + G   D   + TLI       +++   ++  ++ 
Sbjct: 324 YNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVT 383

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+ P+V+T+  LI+   K G    A   +  M++    PD V +N LI      G + 
Sbjct: 384 VKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           +A D+L +M +   P     IT   ++       +++ A EV+  +    I      +  
Sbjct: 444 KALDLLKDMESTGCP--RSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT 501

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   +    + A  + + M  +G+ P+ +  ++++      G ++ A +IL+     G
Sbjct: 502 LIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
             V +++Y +L+     A   Q AL++   M+   ++PT    N ++ +L   + +   +
Sbjct: 562 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 395 EVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            +  +M  +G  P+ +TY I+    C     ++     + +  + G IP    F+ +
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 109/278 (39%), Gaps = 39/278 (14%)

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           ++ D VV+N L+    +   +     V +EM A    + PD +T   LMKA   A QV  
Sbjct: 142 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGA--RGIKPDVVTFNTLMKALCRAHQV-- 197

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
                                              A  + ++M+ +GV PDE   + L+ 
Sbjct: 198 ---------------------------------RTAVLMLEEMSSRGVAPDETTFTTLMQ 224

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G +EAA  +       G S   ++ + L+         + AL   +   +   +P
Sbjct: 225 GFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEP 284

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T N  +  LC  D +   ++V+  M   G  P+  TY+I++    +   +E    +L
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 344

Query: 433 SQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHV 468
           +Q  + G +P++  F  +I  +C+  R E+A  L   V
Sbjct: 345 NQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQV 382



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 167/392 (42%), Gaps = 28/392 (7%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P   V+  +I   G  GA+D    ++AEM  E H V      + + + +       D A 
Sbjct: 72  PGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLG--VVHSFLDSYEGQQLFDDAV 129

Query: 255 EVY--KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           ++   ++   + I+    VY   +N   +    +   SVY +M  +G+ PD V  + L+ 
Sbjct: 130 DLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMK 189

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               A +V  A  +L+E  ++G++    ++++LM       + + AL +   M  +    
Sbjct: 190 ALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSA 249

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           T  T+N LI   C   ++   +  +    + G  P+ ITY+  +    + D V   L ++
Sbjct: 250 TKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVM 309

Query: 433 SQAKEDGVIPNLVMFKCIIG-MCSR-RYEKAR-TLNEHV--------LSFNSGRPQI-EN 480
               ++G  P++  +  ++  +C   + E+A+  LN+ V         +FN+    +   
Sbjct: 310 DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG 369

Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE---NLGVSADALKR 537
                AL + R+  V G  P V   + ++  L    +  +  RL E   N G + D +  
Sbjct: 370 NRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTY 429

Query: 538 S----NLCSLIDGFGEYDPRAFSLLEEAASFG 565
           +    NLCSL    G+   +A  LL++  S G
Sbjct: 430 NTLIDNLCSL----GKLG-KALDLLKDMESTG 456


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 197/468 (42%), Gaps = 40/468 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAF-RFFKLVPN 89
           N +  QG + E + LL  +   G       Y+A    +C +++   ++E      ++   
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN L+     +   E   +VL  + E G   D ++Y T+I    K G ++   E+
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M + G++PNV  Y  ++ G   A +  +A      M  K+   D V FN L+    Q
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G VDR  ++L +M +  H   PD IT   ++      G +D A  + K +     K   
Sbjct: 369 NGLVDRVIELLEQMLS--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA--------------- 314
             YTI +      G W  A  +   M ++G  P+ V  + LI+F                
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 315 --------------------GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
                               G AGK E A E+L    N+GIS   I YSS+  A S    
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGR 546

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             K +++++++K   ++      NA+I++LC   +  + ++  + M S G  PN  TY++
Sbjct: 547 VNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTM 606

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
           L+     +   +    LLS+    G +   +M    I  C++   K +
Sbjct: 607 LIKGLASEGLAKEAQELLSELCSRGALRKHLMRHFGISNCTQENGKQK 654



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/468 (22%), Positives = 189/468 (40%), Gaps = 40/468 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L  +GRI++ +++L++M  KG   +  +YH      C+S       FR            
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSG-----GFR------------ 163

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
                           + +VL  +   G   D      ++    + G VD    +  ++ 
Sbjct: 164 ---------------NSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLA 208

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G E ++ +Y A++ G   A +          M   +  P+ V FN LI    ++G  +
Sbjct: 209 FFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFE 268

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           R  +VLA+M+   H   PD      ++      G ++ A E+   +  Y +K     Y  
Sbjct: 269 RVHEVLAQMSE--HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            +        W+ A  +  +M +K    D+V  + L+DF    G V+   E+L++  + G
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
               +I+Y++++          +A+ L + M S   KP   +   ++  LC   +     
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII--- 451
           E++S M   G  PN +T++ L+    +K  VE  + LL Q   +G  P+L+ +  +I   
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506

Query: 452 GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 499
           G   +  E    LN  V   N G       ++S+A  + RE  V   I
Sbjct: 507 GKAGKTEEALELLNVMV---NKGISPNTIIYSSIACALSREGRVNKVI 551



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 2/238 (0%)

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
           PV P+  T   +++     G++  A EV   +        P +Y + +    ++G +  +
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNS 165

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             V + M  KG   D    + +++     G V+ A  +L++    G    I+SY++++  
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              AK W    EL + M  +   P + T N LI  LC      +  EVL+ M   G  P+
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 464
              Y+ ++    ++  +EV   +L++    G+ PN+V +  ++ G+CS  R+++A  L
Sbjct: 286 IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEEL 343


>gi|298709629|emb|CBJ31438.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 762

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/477 (23%), Positives = 209/477 (43%), Gaps = 57/477 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------IKEAFRFFKLVPNP 90
           R G     + LL++M    +      Y A   +  ++++       I E    + +VP+ 
Sbjct: 233 RAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNKQWERATSLIDEMTLTYGMVPD- 291

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L T+ + +S    +     A ++LR +++ GL+ D K Y+ +IT   K+ K +    + 
Sbjct: 292 -LETYQVAISAAGCASLWPKATKMLRQMRQNGLQPDPKTYSAVITASGKAKKWEESLRLL 350

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG--------------------------- 183
            +M   G+EPN H + A I  C  A Q  +A G                           
Sbjct: 351 DDMREVGVEPNCHNFNAAIASCGVARQWQRAVGLLGEMKGGGLELGLSSYNAAILACATS 410

Query: 184 AYGI--------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           A G+        MR+  V+P+   +  +ITACG++G  +++   L EM A+   + P+  
Sbjct: 411 ARGVEASALLGEMRAAGVEPNAATYLPVITACGKAGMWEQSLVHLREMTAQ--GLAPNSP 468

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
              A++ AC +A + ++A E+   +    +K +   Y  A++ C +    E A  +  DM
Sbjct: 469 IYTAVITACGHAKEWEKALEILAEMPAAGVKASVYHYNTALDACDRAAQGEAAVVLLHDM 528

Query: 296 T-KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS-----YSSLMGAC 349
               GV P+     + +   G  G+V+ A E+L+E K    +   ++     Y+S + AC
Sbjct: 529 DGPPGVSPNPSSYQSAMSACGSEGRVDLALELLEEVKAASTTRPELAPSSKLYASALQAC 588

Query: 350 ----SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
                +  N +KA EL E  +   +     + N  I A     ++ + +  L++MK  GL
Sbjct: 589 VSSPPDGSNARKAKELLEEARGAGIALNWRSYNCAIIAAAKAGEVDEALARLAEMKDAGL 648

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEK 460
            PN ++YS +L A   ++  E  L L+ + K  G++     +  ++   S   R+E+
Sbjct: 649 TPNVMSYSWILPALASRELWEESLALVEEIKGYGLLRTPFAYSVVVAAHSAAGRWEE 705



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/451 (23%), Positives = 203/451 (45%), Gaps = 25/451 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-----LV 87
           +R+ +  R  E +D+L+ M  +GL   +    +     C S+K  +EA    +     L 
Sbjct: 39  SRMAKARRWEEALDILQRMRARGL-QPNSYCVSSAIKACGSKKRWREALELLERRREDLG 97

Query: 88  PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               +  +++  ++  C +S ++    ++L  ++  G       YT  I+ C  SG  D 
Sbjct: 98  EGSPVDEYSLSAAIYACGNSGETGKVLELLEELKVGGKTPHPFSYTAAISACGDSGMGDK 157

Query: 146 MFEVFHEMVNAGIEPN----VHTYGALIDGCAKAGQVAKAFGAY-----GIMRSKNVKPD 196
           + ++F +M  A +  +    V+     I   AK+G+  +A   Y      +  + +    
Sbjct: 158 VMQLFEDMRQARVRTDGFIDVYCVKTTITALAKSGKWKQALKIYLEMLDALPANSDAPEA 217

Query: 197 RVVFNAL---ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            +  +AL     ACG++G    +  +L EM A    + P+     A M++C    Q +RA
Sbjct: 218 NLNLDALRDASLACGRAGDWKASLKLLDEMRAVA--ITPESGCYKAAMQSCVRNKQWERA 275

Query: 254 RE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
              + +M   Y +    E Y +AI+       W  A  +   M + G+ PD    SA+I 
Sbjct: 276 TSLIDEMTLTYGMVPDLETYQVAISAAGCASLWPKATKMLRQMRQNGLQPDPKTYSAVIT 335

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
            +G A K E +  +L + +  G+     ++++ + +C  A+ WQ+A+ L   MK   L+ 
Sbjct: 336 ASGKAKKWEESLRLLDDMREVGVEPNCHNFNAAIASCGVARQWQRAVGLLGEMKGGGLEL 395

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            +S+ NA I A     +  +   +L +M++ G+ PN  TY  ++ AC +    E  L+ L
Sbjct: 396 GLSSYNAAILACATSARGVEASALLGEMRAAGVEPNAATYLPVITACGKAGMWEQSLVHL 455

Query: 433 SQAKEDGVIPNLVMFKCIIGMC--SRRYEKA 461
            +    G+ PN  ++  +I  C  ++ +EKA
Sbjct: 456 REMTAQGLAPNSPIYTAVITACGHAKEWEKA 486



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 130/545 (23%), Positives = 240/545 (44%), Gaps = 44/545 (8%)

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLY--TTLI 134
           E  +     P+P   ++   +S C  S   +   Q+   +++A ++ D    +Y   T I
Sbjct: 128 EELKVGGKTPHPF--SYTAAISACGDSGMGDKVMQLFEDMRQARVRTDGFIDVYCVKTTI 185

Query: 135 TTCAKSGKVDAMFEVFHEMVNA------GIEPNVHTYGALIDG---CAKAGQVAKAFGAY 185
           T  AKSGK     +++ EM++A        E N++   AL D    C +AG    +    
Sbjct: 186 TALAKSGKWKQALKIYLEMLDALPANSDAPEANLN-LDALRDASLACGRAGDWKASLKLL 244

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             MR+  + P+   + A + +C ++   +RA  ++ EM    + + PD  T    + A  
Sbjct: 245 DEMRAVAITPESGCYKAAMQSCVRNKQWERATSLIDEMTL-TYGMVPDLETYQVAISAAG 303

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            A    +A ++ + + +  ++  P+ Y+  I    +   WE +  + DDM + GV P+  
Sbjct: 304 CASLWPKATKMLRQMRQNGLQPDPKTYSAVITASGKAKKWEESLRLLDDMREVGVEPNCH 363

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             +A I   G A + + A  +L E K  G+ +G+ SY++ + AC+ +    +A  L   M
Sbjct: 364 NFNAAIASCGVARQWQRAVGLLGEMKGGGLELGLSSYNAAILACATSARGVEASALLGEM 423

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           ++  ++P  +T   +ITA        +++  L +M + GL PN+  Y+ ++ AC    + 
Sbjct: 424 RAAGVEPNAATYLPVITACGKAGMWEQSLVHLREMTAQGLAPNSPIYTAVITACGHAKEW 483

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE-KARTLNEHVLSFNSGRPQIENKWTS 484
           E  L +L++    GV  ++  +   +  C R  + +A  +  H +    G     + + S
Sbjct: 484 EKALEILAEMPAAGVKASVYHYNTALDACDRAAQGEAAVVLLHDMDGPPGVSPNPSSYQS 543

Query: 485 ------------LALMVYREAIVAGTI-----PTVEVVSKVL-GCLQLP---YNADIRER 523
                       LAL +  E   A T      P+ ++ +  L  C+  P    NA   + 
Sbjct: 544 AMSACGSEGRVDLALELLEEVKAASTTRPELAPSSKLYASALQACVSSPPDGSNARKAKE 603

Query: 524 LVENLGVSADALK-RSNLCSLIDG--FGEYDPRAFSLLEEAASFGIVPCV-SFKEIPVVV 579
           L+E    +  AL  RS  C++I     GE D  A + L E    G+ P V S+  I   +
Sbjct: 604 LLEEARGAGIALNWRSYNCAIIAAAKAGEVD-EALARLAEMKDAGLTPNVMSYSWILPAL 662

Query: 580 DARKL 584
            +R+L
Sbjct: 663 ASREL 667



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 177/406 (43%), Gaps = 48/406 (11%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVC 102
           +L  M + GL    K Y A      K++K  +E+ R      ++   P    FN  ++ C
Sbjct: 314 MLRQMRQNGLQPDPKTYSAVITASGKAKK-WEESLRLLDDMREVGVEPNCHNFNAAIASC 372

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
             ++  + A  +L  ++  GL+     Y   I  CA S +      +  EM  AG+EPN 
Sbjct: 373 GVARQWQRAVGLLGEMKGGGLELGLSSYNAAILACATSARGVEASALLGEMRAAGVEPNA 432

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY  +I  C KAG   ++      M ++ + P+  ++ A+ITACG +   ++A ++LAE
Sbjct: 433 ATYLPVITACGKAGMWEQSLVHLREMTAQGLAPNSPIYTAVITACGHAKEWEKALEILAE 492

Query: 223 MNAE----------------------------VHPVD------PDHITIGALMKACANAG 248
           M A                             +H +D      P+  +  + M AC + G
Sbjct: 493 MPAAGVKASVYHYNTALDACDRAAQGEAAVVLLHDMDGPPGVSPNPSSYQSAMSACGSEG 552

Query: 249 QVDRAREVYKMIH-----KYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKG 299
           +VD A E+ + +      +  +  + ++Y  A+  C  +     +   A  + ++    G
Sbjct: 553 RVDLALELLEEVKAASTTRPELAPSSKLYASALQACVSSPPDGSNARKAKELLEEARGAG 612

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           +  +    +  I  A  AG+V+ A   L E K+ G++  ++SYS ++ A ++ + W+++L
Sbjct: 613 IALNWRSYNCAIIAAAKAGEVDEALARLAEMKDAGLTPNVMSYSWILPALASRELWEESL 672

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
            L E +K   L  T    + ++ A     +  +   VL DM + G+
Sbjct: 673 ALVEEIKGYGLLRTPFAYSVVVAAHSAAGRWEEVCGVLEDMIAAGV 718



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 144/348 (41%), Gaps = 51/348 (14%)

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y + I   AKA +  +A      MR++ ++P+    ++ I ACG       A ++L    
Sbjct: 34  YASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSSAIKACGSKKRWREALELLERRR 93

Query: 225 AEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC---- 279
            ++    P D  ++ A + AC N+G+  +  E+ + +        P  YT AI+ C    
Sbjct: 94  EDLGEGSPVDEYSLSAAIYACGNSGETGKVLELLEELKVGGKTPHPFSYTAAISACGDSG 153

Query: 280 -----------------------------------SQTGDWEFACSVY----DDMTKKGV 300
                                              +++G W+ A  +Y    D +     
Sbjct: 154 MGDKVMQLFEDMRQARVRTDGFIDVYCVKTTITALAKSGKWKQALKIYLEMLDALPANSD 213

Query: 301 IPD-EVFLSALIDFA---GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            P+  + L AL D +   G AG  +A+ ++L E +   I+     Y + M +C   K W+
Sbjct: 214 APEANLNLDALRDASLACGRAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNKQWE 273

Query: 357 KALELYEHMK-SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           +A  L + M  +  + P + T    I+A       PK  ++L  M+  GL P+  TYS +
Sbjct: 274 RATSLIDEMTLTYGMVPDLETYQVAISAAGCASLWPKATKMLRQMRQNGLQPDPKTYSAV 333

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKA 461
           + A  +    E  L LL   +E GV PN   F   I  C  +R++++A
Sbjct: 334 ITASGKAKKWEESLRLLDDMREVGVEPNCHNFNAAIASCGVARQWQRA 381


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 171/379 (45%), Gaps = 8/379 (2%)

Query: 79  EAFRFFKLV-----PNPTLSTFNMLMSVCA-SSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           +A + F+LV     P P     N+L  V      + E ++ +   V ++G       +  
Sbjct: 194 DAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALYLEVLDSGYPPKIYFFNV 253

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+    K+G V     VF E+   G+ P V ++  LI GC K+G V + F   G+M S+ 
Sbjct: 254 LMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEG 313

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           V PD   F+ALI    + G +D    +  EM      + P+ +T   L+      G+VD 
Sbjct: 314 VCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGR--GLVPNGVTFTTLIDGQCKGGKVDL 371

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A + ++M+    ++     Y   IN   + GD + A  + ++MT  G+ PD++  + LID
Sbjct: 372 ALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLID 431

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G +E+A EI +    +GI +  +++++L+           A  +   M S   KP
Sbjct: 432 GCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKP 491

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T   +I   C    +    ++L +M+S G  P  +TY+ L+    ++  ++   MLL
Sbjct: 492 DDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLL 551

Query: 433 SQAKEDGVIPNLVMFKCII 451
                 GV PN + +  ++
Sbjct: 552 DAMLNVGVAPNDITYNILL 570



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 173/365 (47%), Gaps = 5/365 (1%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--SGKVDAMFEVFHE 152
           F+ L+S    S  +  A Q  RLV +       +    L+    +    +++  + ++ E
Sbjct: 179 FDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALYLE 238

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           ++++G  P ++ +  L+ G  KAG V  A   +  +  + ++P  V FN LI+ C +SG 
Sbjct: 239 VLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGD 298

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V+  F +   M +E   V PD  T  AL+      G++D    ++  +    +      +
Sbjct: 299 VEEGFRLKGVMESE--GVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTF 356

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  I+   + G  + A   +  M  +GV PD V  +ALI+     G ++ A  ++ E   
Sbjct: 357 TTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTA 416

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+    I++++L+  C    + + ALE+   M    ++       ALI+ LC   ++  
Sbjct: 417 SGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHD 476

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
              +L+DM S G  P+  TY++++    +K DV++G  LL + + DG +P +V +  ++ 
Sbjct: 477 AGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMN 536

Query: 452 GMCSR 456
           G+C +
Sbjct: 537 GLCKQ 541



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 134/293 (45%), Gaps = 14/293 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P 88
           N L ++GR+ E   L ++M  +GL+     +       CK  K +  A + F+++     
Sbjct: 326 NGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGK-VDLALKNFQMMLAQGV 384

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+N L++      D + A +++  +  +GLK D   +TTLI  C K G +++  E
Sbjct: 385 RPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALE 444

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   MV  GIE +   + ALI G  + G+V  A      M S   KPD   +  +I    
Sbjct: 445 IKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFC 504

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V   F +L EM ++ H   P  +T  ALM      GQ+  A+ +   +    +   
Sbjct: 505 KKGDVKMGFKLLKEMQSDGHV--PGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPN 562

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDM--TKKGVIPDEVFLSALIDFAGHAGK 319
              Y I ++  S+ G      SV  D+  ++KG++ D    +AL++ +    K
Sbjct: 563 DITYNILLDGHSKHGS-----SVDVDIFNSEKGLVTDYASYTALVNESSKTSK 610



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 127/258 (49%), Gaps = 7/258 (2%)

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           ++R++ +  E+    +P  P       LM     AG V  AR V+  I K  ++ T   +
Sbjct: 229 IERSWALYLEVLDSGYP--PKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSF 286

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+ C ++GD E    +   M  +GV PD    SALI+     G+++    +  E   
Sbjct: 287 NTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCG 346

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +G+    +++++L+ G C   K    AL+ ++ M +  ++P + T NALI  LC    L 
Sbjct: 347 RGLVPNGVTFTTLIDGQCKGGK-VDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLK 405

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   ++++M + GL P+ IT++ L+  C +  D+E  L +  +  E+G+  + V F  +I
Sbjct: 406 EARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALI 465

Query: 452 -GMC--SRRYEKARTLNE 466
            G+C   R ++  R L +
Sbjct: 466 SGLCREGRVHDAGRMLTD 483



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 9/199 (4%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V   L +YN LI    + G + E   L+ +M   GL   DK+      + C     +
Sbjct: 381 AQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGL-KPDKITFTTLIDGCCKDGDM 439

Query: 78  KEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + A    + +    +      F  L+S          A ++L  +  AG K D   YT +
Sbjct: 440 ESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMV 499

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    K G V   F++  EM + G  P V TY AL++G  K GQ+  A      M +  V
Sbjct: 500 IDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGV 559

Query: 194 KPDRVVFNALITACGQSGA 212
            P+ + +N L+    + G+
Sbjct: 560 APNDITYNILLDGHSKHGS 578


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 154/325 (47%), Gaps = 2/325 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ML+S      D   AF++   + ++GL+ D  +Y  LI    K G +D    +  +M
Sbjct: 489 TYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKM 548

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               ++P+   +  +I+G A AG + +A     +MR     P  + +NALI    +   V
Sbjct: 549 QKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQV 608

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           +RA  VL +M+  +  + P+  T   +M+  A  G + +A E +  I +  +K    +Y 
Sbjct: 609 ERAVSVLNKMS--IAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYE 666

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++++ K  
Sbjct: 667 TLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKED 726

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+   I +Y+S + AC  A + Q+A  + + M  + LKP + T   LI          + 
Sbjct: 727 GVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRA 786

Query: 394 MEVLSDMKSLGLCPNTITYSILLVA 418
           ++   +MK  GL P+   Y  L+ +
Sbjct: 787 LKCFEEMKLAGLKPDEAAYHCLVTS 811



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 160/365 (43%), Gaps = 2/365 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +  ++ +M      +D +    V   ++E         Y  LI    K GKV     +  
Sbjct: 417 IDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISK 476

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM ++GI+ N  TY  LI G         AF  +  M    ++PDR ++N LI A  + G
Sbjct: 477 EMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMG 536

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA  +L +M  E   + P +     +++  A AG + RA ++  ++ +     T   
Sbjct: 537 NMDRAIRILEKMQKE--RMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMT 594

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+   +    E A SV + M+  G+ P+E   + ++      G +  AFE   + K
Sbjct: 595 YNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIK 654

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+ + +  Y +L+ AC  +   Q AL +   M S K+       N LI        + 
Sbjct: 655 EGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVW 714

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  MK  G+ PN  TY+  + AC +  D++    ++ +  + G+ PNL  +  +I
Sbjct: 715 EAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLI 774

Query: 452 GMCSR 456
              +R
Sbjct: 775 KGWAR 779



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 181/418 (43%), Gaps = 5/418 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAF-RFFKLVPNPTLS 93
           + G +    +L+ +ME  G+      YH+    + + + +K     F R  +    P++ 
Sbjct: 394 QSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSII 453

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++  L+++         A  + + ++ +G+K + K Y+ LI+           F +F EM
Sbjct: 454 SYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEM 513

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           + +G++P+   Y  LI+   K G + +A      M+ + ++P    F  +I     +G +
Sbjct: 514 LKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDM 573

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            RA D+L  M        P  +T  AL+       QV+RA  V   +    I      YT
Sbjct: 574 KRALDILDLMRRS--GCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYT 631

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I +   + TGD   A   +  + + G+  D      L+     +G++++A  + +E  +Q
Sbjct: 632 IIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQ 691

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            I+     Y+ L+   +   +  +A +L + MK   + P + T  + I A C    + + 
Sbjct: 692 KIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 751

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             V+ +M  +GL PN  TY+ L+    R    +  L    + K  G+ P+   + C++
Sbjct: 752 QTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLV 809



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 166/399 (41%), Gaps = 37/399 (9%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+ T+++L+S      D++ A  + +  +      +  +Y+ +I    +SG +D   E+ 
Sbjct: 346 TIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQSGNMDRAEELV 405

Query: 151 HEMVNAGIE-----------------------------------PNVHTYGALIDGCAKA 175
           HEM   GI+                                   P++ +YG LI+   K 
Sbjct: 406 HEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKI 465

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G+VAKA      M S  +K +   ++ LI+          AF +  EM      + PD  
Sbjct: 466 GKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKS--GLQPDRA 523

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
               L++A    G +DRA  + + + K  ++ +   +   I   +  GD + A  + D M
Sbjct: 524 IYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLM 583

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            + G  P  +  +ALI       +VE A  +L +    GI+    +Y+ +M   +   + 
Sbjct: 584 RRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDI 643

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            KA E +  +K   LK  V     L+ A C   ++   + V  +M S  +  NT  Y+IL
Sbjct: 644 AKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNIL 703

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           +    R+ DV     L+ Q KEDGV PN+  +   I  C
Sbjct: 704 IDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINAC 742



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 178/404 (44%), Gaps = 33/404 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +P P+   F +++   A   D   A      ++  G++ +  ++T+L+   A +  +
Sbjct: 269 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 328

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                   EM   GIE  + TY  LI G  K      A   +   ++     + ++++ +
Sbjct: 329 RGALSCTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNI 388

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVDPDH--------------------------- 234
           I A  QSG +DRA +++ EM  +    P+D  H                           
Sbjct: 389 IHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCF 448

Query: 235 ----ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
               I+ G L+      G+V +A  + K +    IK   + Y++ I+      D+  A  
Sbjct: 449 TPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFR 508

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           ++++M K G+ PD    + LI+     G ++ A  IL++ + + +     ++  ++   +
Sbjct: 509 IFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFA 568

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A + ++AL++ + M+     PTV T NALI  L   +Q+ + + VL+ M   G+ PN  
Sbjct: 569 VAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEH 628

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+I++       D+       ++ KE G+  ++ +++ ++  C
Sbjct: 629 TYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRAC 672



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 163/356 (45%), Gaps = 7/356 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFFKLVPN 89
           N  ++ G++++ I + ++ME  G+   +K Y    + F ++     A +      K    
Sbjct: 460 NLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQ 519

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P  + +N+L+       + + A ++L  +Q+  ++   + +  +I   A +G +    ++
Sbjct: 520 PDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDI 579

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M  +G  P V TY ALI G  +  QV +A      M    + P+   +  ++     
Sbjct: 580 LDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAA 639

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G + +AF+   ++      +D        L++AC  +G++  A  V + +    I    
Sbjct: 640 TGDIAKAFEYFTKIKEGGLKLDV--YIYETLLRACCKSGRMQSALAVTREMSSQKIARNT 697

Query: 270 EVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            VY I I+  ++ GD WE A  +   M + GV P+    ++ I+    AG ++ A  ++ 
Sbjct: 698 FVYNILIDGWARRGDVWE-AADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVID 756

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E  + G+   + +Y++L+   + A    +AL+ +E MK   LKP  +  + L+T+L
Sbjct: 757 EMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSL 812



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 36/161 (22%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    R+G + E  DL++ M+  G                               V
Sbjct: 700 YNILIDGWARRGDVWEAADLMKQMKEDG-------------------------------V 728

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P + T+   ++ C  + D + A  V+  + + GLK + K YTTLI   A++   D   
Sbjct: 729 P-PNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRAL 787

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           + F EM  AG++P+   Y  L+        V +     GI+
Sbjct: 788 KCFEEMKLAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIL 828


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 199/446 (44%), Gaps = 15/446 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G+    +++++DM R  +      Y+    N C S    KEA    K 
Sbjct: 199 TYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYN-NLINACGSSGNWKEALNVCKK 257

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P L T N+++S                L++   ++ D      +I    K G+
Sbjct: 258 MTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQ 317

Query: 143 VDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
                ++F+ M     E  P+V T+  +I   +  GQ+     A+  M ++ +KP+ V +
Sbjct: 318 NGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSY 377

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           NALI A    G    AF V  E+    +   PD ++  +L+ A   +G+ ++A +V++++
Sbjct: 378 NALIGAYASHGMDKEAFSVFNEIKK--NGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELM 435

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            + + K     Y   I+     G    A  +  +M + GV P+ V +  L+   G  G+ 
Sbjct: 436 RRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQK 495

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
                +L  A+ +GI +   +Y+S +G+  +   + KAL LY  M++ K+KP   T N L
Sbjct: 496 VKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVL 555

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I+  C   +  + +  L +M  L +  +   YS ++ A  ++  V     + ++ K  G 
Sbjct: 556 ISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGC 615

Query: 441 IPNLVMFKCIIGM--CSRRYEKARTL 464
            P+++ +  +I     +  +EKA  L
Sbjct: 616 RPDVITYTAMIHAYDVAENWEKASAL 641



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 165/365 (45%), Gaps = 5/365 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T +T   L SVC   ++ + AF  +      GLK +   Y  LI   A  G     F VF
Sbjct: 341 TFTTIIHLYSVCGQIENCQTAFNTM---LAEGLKPNIVSYNALIGAYASHGMDKEAFSVF 397

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           +E+   G  P+V +Y +L++   K+G+  KA   + +MR  + KP+ V +NALI A G  
Sbjct: 398 NEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSK 457

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +  A ++L EM  E + V P+ ++I  L+ AC   GQ  + + V        IK    
Sbjct: 458 GLLTEAVEILHEM--ERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTT 515

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y  AI      G+++ A S+Y  M  K V PD V  + LI       K   A   L E 
Sbjct: 516 AYNSAIGSYLSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEM 575

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            +  I +    YSS++ A S      +A  ++  MK +  +P V T  A+I A    +  
Sbjct: 576 MDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENW 635

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            K   +  +M++  + P++I  S L+ A  +       L+L    +E  +  N   F  +
Sbjct: 636 EKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKKIPFNNSSFFEM 695

Query: 451 IGMCS 455
           +  CS
Sbjct: 696 VSACS 700



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 167/396 (42%), Gaps = 42/396 (10%)

Query: 109 EGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           E + QV R ++ +    A   +Y  +I   A+   VD    +F EM     +P+  TY A
Sbjct: 143 EHSVQVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNA 202

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           LI+   +AGQ   A      M    + P R  +N LI ACG SG    A +V  +M    
Sbjct: 203 LINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTE-- 260

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
           + V PD +T   ++ A     Q  +    ++++   NI+       I I C  + G    
Sbjct: 261 NGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGK 320

Query: 288 ACSVYDDMTKK-------------------------------------GVIPDEVFLSAL 310
           A  +++ M +K                                     G+ P+ V  +AL
Sbjct: 321 AIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNAL 380

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I      G  + AF +  E K  G    ++SY+SL+ A   +   +KA++++E M+    
Sbjct: 381 IGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHC 440

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           KP + + NALI A      L + +E+L +M+  G+ PN ++   LL AC R         
Sbjct: 441 KPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKS 500

Query: 431 LLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 464
           +LS A+  G+  N   +   IG  +    Y+KA +L
Sbjct: 501 VLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSL 536



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 104/447 (23%), Positives = 188/447 (42%), Gaps = 17/447 (3%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + SYN LI      G   E   +  ++++ G    D V +    N        
Sbjct: 367 AEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGF-HPDVVSYTSLLNAYGKSGKP 425

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           ++A + F+L+      P L ++N L+    S      A ++L  ++  G++ +     TL
Sbjct: 426 EKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTL 485

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +  C + G+   +  V       GI+ N   Y + I      G+  KA   Y  MR+K V
Sbjct: 486 LAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKV 545

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KPD V +N LI+ C +      A   L EM     P+  +     +++ A +  GQV  A
Sbjct: 546 KPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKE--VYSSVICAYSKQGQVTEA 603

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI-- 311
             ++  +     +     YT  I+      +WE A +++ +M    V PD +  S+L+  
Sbjct: 604 ESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRA 663

Query: 312 -DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
            +  G   KV    E ++E K   I     S+  ++ ACS  + W++ + L + M+    
Sbjct: 664 FNKGGQPAKVLVLAEFMREKK---IPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSIS 720

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
             ++  +N L+  L    ++   M++   + + G   N  TYSILL       +    + 
Sbjct: 721 VVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSILLKNLLAAGNWRKYIE 780

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           +L   +E G+ P++ M++ I      R
Sbjct: 781 VLQWMEEAGLQPSVGMYRSISSFAQNR 807



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 118/258 (45%), Gaps = 3/258 (1%)

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           R  F  LI    Q G+++ +  V   M  + +    + I    +++  A    VD+AR +
Sbjct: 126 RKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDI-YNMMIRLHARHNIVDQARGL 184

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  + K+  K   E Y   IN   + G W +A ++ DDM +  + P     + LI+  G 
Sbjct: 185 FFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGS 244

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           +G  + A  + ++    G+   +++++ ++ A      + K L  +E MK   ++P  +T
Sbjct: 245 SGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTT 304

Query: 377 MNALITALCDGDQLPKTMEVLSDMK-SLGLC-PNTITYSILLVACERKDDVEVGLMLLSQ 434
           +N +I  L    Q  K +++ + MK     C P+ +T++ ++        +E      + 
Sbjct: 305 LNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNT 364

Query: 435 AKEDGVIPNLVMFKCIIG 452
              +G+ PN+V +  +IG
Sbjct: 365 MLAEGLKPNIVSYNALIG 382



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A  L+  M+  + KP   T NALI A     Q    M ++ DM    + P+  TY+ L+
Sbjct: 180 QARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLI 239

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG-R 475
            AC    + +  L +  +  E+GV P+LV    ++    R  + ++ L+   L   +  R
Sbjct: 240 NACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIR 299

Query: 476 PQIENKWTSLALMVY 490
           P      T+L +++Y
Sbjct: 300 PDT----TTLNIVIY 310


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 193/443 (43%), Gaps = 20/443 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           LI+ G I    +LL  + + G++    VY++   ++CK+ K ++EA   F ++     NP
Sbjct: 340 LIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGK-LEEAELLFSVMAERGLNP 398

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+ +L+         + AF     + E G+ A    Y ++I    K GK+     +F
Sbjct: 399 NDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLF 458

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EMV+ G++P V TY +LI G  K G V KAF  Y  M  K + P+ V F ALI    Q 
Sbjct: 459 KEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQI 518

Query: 211 GAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
             +  A   FD + E+      + P+ +T   L++     G   RA E+   + K  +  
Sbjct: 519 NKMAEASKLFDEMVEL-----KILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGL-- 571

Query: 268 TPEVYT---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +P+ YT   +    CS TG    A    +D+  K    DE+  +AL+      G+++ A 
Sbjct: 572 SPDTYTYRPLIAGLCS-TGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEAL 630

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
              QE   +G+ + ++SY+ L+    N +N +   EL   M    ++P       LI   
Sbjct: 631 VARQEMVGRGLQMDLVSYAVLISGALN-QNDRILFELLREMHGKGMQPDNVIYTILIDGF 689

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
                L K  E    M   G  PN++TY+ L+    +   V    +L  +      IPN 
Sbjct: 690 IKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNH 749

Query: 445 VMFKCIIGMCSRRYEKARTLNEH 467
           + + C +   ++       L  H
Sbjct: 750 ITYGCFLDHLTKEGNMENALQLH 772



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 169/366 (46%), Gaps = 3/366 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T + L++  A  +      ++   +  AG+K DC +YT ++    +    +   E+
Sbjct: 188 PEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEI 247

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            ++    G   ++ TY   I+G  K+ +V +A      +  K +K D V +  L+    +
Sbjct: 248 INQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCR 307

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
               +   +++ EM  E+  V P    +  L++     G ++ A E+   + K  +    
Sbjct: 308 IQEFEVGMEMMDEM-IELGYV-PSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNL 365

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   IN   +TG  E A  ++  M ++G+ P++V  + LID  G   K++ AF    +
Sbjct: 366 FVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNK 425

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GIS  + SY+S++         + A  L++ M    LKPTV+T  +LI+  C    
Sbjct: 426 MIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGL 485

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +PK  ++  +M   G+ PNT+T++ L+    + + +     L  +  E  ++PN V +  
Sbjct: 486 VPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNV 545

Query: 450 II-GMC 454
           +I G C
Sbjct: 546 LIEGHC 551



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 153/329 (46%), Gaps = 8/329 (2%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++ T+N+ ++    SK    A +V R + E GLKAD   Y TL+    +  + +   E+ 
Sbjct: 259 SIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMM 318

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM+  G  P+      LI+G  K G +  AF     +    V P+  V+N++I +  ++
Sbjct: 319 DEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKT 378

Query: 211 GAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
           G ++ A   F V+AE       ++P+ +T   L+       ++D A   +  + +  I  
Sbjct: 379 GKLEEAELLFSVMAE-----RGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISA 433

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   Y   INC  + G  + A  ++ +M  KG+ P     ++LI      G V  AF++ 
Sbjct: 434 TVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLY 493

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E   +GI+   +++++L+          +A +L++ M  +K+ P   T N LI   C  
Sbjct: 494 HEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCRE 553

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILL 416
               +  E+L +M   GL P+T TY  L+
Sbjct: 554 GNTTRAFELLDEMIKKGLSPDTYTYRPLI 582



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 166/372 (44%), Gaps = 15/372 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+G  +   +LL++M +KGL      Y      +C + + + EA  F   
Sbjct: 542 TYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGR-VSEAKEFIND 600

Query: 87  VPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +       L    +L   C   +  E       +V   GL+ D   Y  LI+  A + 
Sbjct: 601 LHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGR-GLQMDLVSYAVLISG-ALNQ 658

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
               +FE+  EM   G++P+   Y  LIDG  K+G + KAF  + IM  +   P+ V + 
Sbjct: 659 NDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYT 718

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           AL+    ++G V+ A  +   M   V    P+HIT G  +      G ++ A +++  + 
Sbjct: 719 ALVNGLFKAGYVNEAKLLFKRM--LVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAML 776

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           + +   T   Y I I    Q G ++ A  + D M   G++PD +  S  I      G V+
Sbjct: 777 QGSFANTV-TYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVD 835

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           AA ++ +    +G+    + ++ L+ AC       +AL+L   M    LKPT ST ++L+
Sbjct: 836 AAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLM 895

Query: 382 TALCDGDQLPKT 393
             L    +L + 
Sbjct: 896 VQLAQRARLTQV 907



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 196/450 (43%), Gaps = 17/450 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  ++SYN +I    + G++     L ++M  KGL      Y +     CK    + +A
Sbjct: 431 ISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKD-GLVPKA 489

Query: 81  FRFFKLVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           F+ +  +      P   TF  L+  +C  +K +E +     +V+   L  +   Y  LI 
Sbjct: 490 FKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVT-YNVLIE 548

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              + G     FE+  EM+  G+ P+ +TY  LI G    G+V++A      +  K+ + 
Sbjct: 549 GHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRL 608

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR- 254
           D + + AL+    + G +  A     EM      +  D ++   L+    N  Q DR   
Sbjct: 609 DELCYTALLQGFCKEGRIKEALVARQEMVGR--GLQMDLVSYAVLISGALN--QNDRILF 664

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E+ + +H   ++    +YTI I+   ++G+ + A   +  M  +G +P+ V  +AL++  
Sbjct: 665 ELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGL 724

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             AG V  A  + +           I+Y   +   +   N + AL+L+  M       TV
Sbjct: 725 FKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFANTV 784

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI   C   +  +  ++L  M  +G+ P+ ITYS  +    ++ +V+  + +   
Sbjct: 785 -TYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWEC 843

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
             + G+ P+ V+F  +I  C    E  R L
Sbjct: 844 MLQRGLKPDRVVFNFLIHACCLNGELDRAL 873



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/339 (19%), Positives = 135/339 (39%), Gaps = 25/339 (7%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P+  T+ AL+ A A   +  +  E++  +    +K    +YT+ + C  +  D+  A  +
Sbjct: 188 PEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEI 247

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
            +     G     V  +  I+    + +V  A E+ +    +G+   +++Y +L+     
Sbjct: 248 INQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCR 307

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
            + ++  +E+ + M  +   P+ + ++ LI  L     +    E+L+ +  LG+ PN   
Sbjct: 308 IQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFV 367

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF 471
           Y+ ++ +  +   +E   +L S   E G+ PN V +  +I    RR +            
Sbjct: 368 YNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAK------------ 415

Query: 472 NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVS 531
                        +A   + + I  G   TV   + ++ C        + E L + +   
Sbjct: 416 -----------LDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDK 464

Query: 532 ADALKRSNLCSLIDGFGE--YDPRAFSLLEEAASFGIVP 568
                 +   SLI G+ +    P+AF L  E    GI P
Sbjct: 465 GLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAP 503



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 3/165 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+   +       + E A Q+   + +    A+   Y  LI    + GK     ++
Sbjct: 747 PNHITYGCFLDHLTKEGNMENALQLHNAMLQGSF-ANTVTYNILIRGYCQIGKFQEAAKL 805

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M+  G+ P+  TY   I    K G V  A   +  M  + +KPDRVVFN LI AC  
Sbjct: 806 LDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCL 865

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           +G +DRA  +  +M   +  + P   T  +LM   A   ++ + +
Sbjct: 866 NGELDRALQLRNDM--MLRGLKPTQSTYHSLMVQLAQRARLTQVQ 908


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 198/436 (45%), Gaps = 11/436 (2%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI    R+G   E   + ++M+  G  + DKV      +V    +  +EA    K
Sbjct: 257 YTYNTLISCCRRRGLYREAAQMFDEMKAAGF-EPDKVTFNSLLDVYGKARRHEEAIGVLK 315

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + N    P++ T+N L+S        E A ++ + ++  G+K D   YTTLI+   + G
Sbjct: 316 KMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIG 375

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+DA    + EMV  G  PN+ TY ALI      G+  +    +  +RS    PD V +N
Sbjct: 376 KIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWN 435

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            L+   GQ+G       V  EM    +   P+  T  +L+ + +  G  D+A E+YK + 
Sbjct: 436 TLLAVFGQNGLDSEVSGVFKEMKKAGYI--PERDTYVSLISSYSRCGLFDQAMEIYKRMI 493

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  I      Y   ++  ++ G W  A  ++ +M  +   PDE+  S+L+    +A K++
Sbjct: 494 EAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLD 553

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
               + ++   Q I        +L+   +   +  +  + ++ ++  +    ++ +NA++
Sbjct: 554 KMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMV 613

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           +       + K  EVL+ MK   +  +  TY+ L+    R  D E    +L++ K  G+ 
Sbjct: 614 SIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMR 673

Query: 442 PNLVMFKCIIGMCSRR 457
           P+   +  +I    R+
Sbjct: 674 PDRYSYNTVIYAYGRK 689



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 159/333 (47%), Gaps = 7/333 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSGKVDA 145
            P L T+N+++ V   SK S    +V+ LV   +E G++ D   Y TLI+ C + G    
Sbjct: 217 QPALVTYNVVLHVY--SKMSVPWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYRE 274

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++F EM  AG EP+  T+ +L+D   KA +  +A G    M +    P  V +N+LI+
Sbjct: 275 AAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLIS 334

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           A  + G ++ A ++  EM  E   + PD +T   L+      G++D A   Y  + +   
Sbjct: 335 AYVKDGLLEEALELKQEM--EFRGMKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGC 392

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 Y   I      G +     V+DD+   G +PD V  + L+   G  G       
Sbjct: 393 SPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSG 452

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + +E K  G      +Y SL+ + S    + +A+E+Y+ M    + P +ST NA+++AL 
Sbjct: 453 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALA 512

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            G +  +  ++ ++M+     P+ ++YS LL A
Sbjct: 513 RGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHA 545



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/433 (23%), Positives = 189/433 (43%), Gaps = 12/433 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF-RFFK 85
           +YN LI    + G + E ++L ++ME +G+   D V +    +       I  A   + +
Sbjct: 328 TYNSLISAYVKDGLLEEALELKQEMEFRGM-KPDVVTYTTLISGLDRIGKIDAALATYSE 386

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +V N   P L T+N L+ +            V   ++ AG   D   + TL+    ++G 
Sbjct: 387 MVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGL 446

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
              +  VF EM  AG  P   TY +LI   ++ G   +A   Y  M    + PD   +NA
Sbjct: 447 DSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNA 506

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +++A  + G   +A  + AEM  E     PD ++  +L+ A ANA ++D+ + + + I+ 
Sbjct: 507 VLSALARGGRWVQAEKLFAEM--EDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYA 564

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I+    +    +   ++          + ++ ++    D   L+A++   G    V+ 
Sbjct: 565 QRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKK 624

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
             E+L   K   I+    +Y+SLM   S   + +K   +   +KS  ++P   + N +I 
Sbjct: 625 VEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIY 684

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           A     Q+ +   + S+MK  G+ P+ +TY+I + +       E  + L+      G  P
Sbjct: 685 AYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKP 744

Query: 443 NLVMFKCII-GMC 454
           N   +  I+ G C
Sbjct: 745 NERTYNSILEGYC 757



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 149/344 (43%), Gaps = 9/344 (2%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   YT L++  +++G+      VF  MV+ G++P + TY  ++   +K     K     
Sbjct: 184 DASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVVL 243

Query: 186 -GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
              M+   ++ DR  +N LI+ C + G    A  +  EM A     +PD +T  +L+   
Sbjct: 244 VDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAA--GFEPDKVTFNSLLDVY 301

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
             A + + A  V K +   N   TP V  Y   I+   + G  E A  +  +M  +G+ P
Sbjct: 302 GKARRHEEAIGVLKKME--NAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKP 359

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D V  + LI      GK++AA     E    G S  + +Y++L+        + + + ++
Sbjct: 360 DVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVF 419

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           + ++S    P V T N L+          +   V  +MK  G  P   TY  L+ +  R 
Sbjct: 420 DDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRC 479

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
              +  + +  +  E G+ P++  +  ++   +R  R+ +A  L
Sbjct: 480 GLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKL 523



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/347 (19%), Positives = 157/347 (45%), Gaps = 33/347 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L++V   +        V + +++AG   +   Y +LI++ ++ G  D   E+
Sbjct: 429 PDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEI 488

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M+ AGI P++ TY A++   A+ G+  +A   +  M  ++ KPD + +++L+ A   
Sbjct: 489 YKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYAN 548

Query: 210 SGAVDR----AFDVLAE--------------MNAEVHPVDP---------------DHIT 236
           +  +D+    + D+ A+              +N +V+ +                 D   
Sbjct: 549 AKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINV 608

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           + A++        V +  EV  ++ + +I  +   Y   ++  S+ GD E   ++  ++ 
Sbjct: 609 LNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIK 668

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
             G+ PD    + +I   G  G+++ A  +  E K  G+   I++Y+  + +      ++
Sbjct: 669 SSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFE 728

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +A++L  ++ +   KP   T N+++   C   ++ +    LS++  +
Sbjct: 729 EAIDLVRYLVAQGCKPNERTYNSILEGYCRHGRMVEAKSFLSNLPKI 775



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 148/365 (40%), Gaps = 48/365 (13%)

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P+   Y AL+   ++AG+   A   +  M    V+P  V +N ++    +     +   V
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVV 242

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L                             VD  +E    + +Y        Y   I+CC
Sbjct: 243 L-----------------------------VDSMKEDGIELDRY-------TYNTLISCC 266

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            + G +  A  ++D+M   G  PD+V  ++L+D  G A + E A  +L++ +N G +  +
Sbjct: 267 RRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSV 326

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++Y+SL+ A       ++ALEL + M+   +KP V T   LI+ L    ++   +   S+
Sbjct: 327 VTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYSE 386

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           M   G  PN  TY+ L+     +      +++    +  G +P++V +  ++ +  +   
Sbjct: 387 MVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTLLAVFGQNGL 446

Query: 460 KARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSK 507
            +           +G     + + SL            A+ +Y+  I AG  P +   + 
Sbjct: 447 DSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNA 506

Query: 508 VLGCL 512
           VL  L
Sbjct: 507 VLSAL 511



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 137/316 (43%), Gaps = 25/316 (7%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACS 290
           PD     AL+   + AG+   A  V++ +    ++     Y + ++  S+    W+    
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVV 242

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           + D M + G+  D    + LI      G    A ++  E K  G     ++++SL+    
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG 302

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A+  ++A+ + + M++    P+V T N+LI+A      L + +E+  +M+  G+ P+ +
Sbjct: 303 KARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVV 362

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
           TY+ L+   +R   ++  L   S+   +G  PNL  +  +I M   R +      E ++ 
Sbjct: 363 TYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGK----FTEMMIV 418

Query: 471 FNSGR-----PQIENKWTSLALM-----------VYREAIVAGTIPT----VEVVSKVLG 510
           F+  R     P +    T LA+            V++E   AG IP     V ++S    
Sbjct: 419 FDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSR 478

Query: 511 CLQLPYNADIRERLVE 526
           C       +I +R++E
Sbjct: 479 CGLFDQAMEIYKRMIE 494


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 184/431 (42%), Gaps = 41/431 (9%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+   ++Y  +IR    +GR+ E + LL+DM  +G               C+        
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRG---------------CQ-------- 177

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P++ T+ +L+     S     A +VL  ++  G   +   Y  +I    + 
Sbjct: 178 ---------PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCRE 228

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+VD   E  + + + G +P+  +Y  ++ G   A +       +  M  KN  P+ V F
Sbjct: 229 GRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTF 288

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + L+    + G V+RA  VL +M+   H    +      ++      G+VD A +    +
Sbjct: 289 DMLVRFFCRGGMVERAIQVLEQMSG--HGCAANTTLCNIVINTICKQGRVDDAFQFLNNM 346

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             Y        YT  +    +   WE A  +  +M +K   P+EV  +  I      G +
Sbjct: 347 GSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLI 406

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E A  ++++    G  V I++Y++L+           ALEL+    S+  KP   T   L
Sbjct: 407 EQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELF---YSMPCKPNTITYTTL 463

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +T LC+ ++L    E+L++M      PN +T+++L+    +K  ++  + L+ Q  E G 
Sbjct: 464 LTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGC 523

Query: 441 IPNLVMFKCII 451
            PNL+ +  ++
Sbjct: 524 TPNLITYNTLL 534



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 212/470 (45%), Gaps = 26/470 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+GR+ +  + L  +   G       Y      +C +++       F +++     
Sbjct: 223 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 282

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TF+ML+         E A QVL  +   G  A+  L   +I T  K G+VD  F+ 
Sbjct: 283 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 342

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M + G  P+  +Y  ++ G  +A +   A      M  KN  P+ V FN  I    Q
Sbjct: 343 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 402

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +++A  ++ +M+   H  + + +T  AL+      G+VD A E++     Y++   P
Sbjct: 403 KGLIEQATMLIEQMSE--HGCEVNIVTYNALVNGFCVQGRVDSALELF-----YSMPCKP 455

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  +         + A  +  +M +K   P+ V  + L+ F    G ++ A E++
Sbjct: 456 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 515

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++    G +  +I+Y++L+   +N  N ++ALEL   + S  + P + T +++I  L   
Sbjct: 516 EQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRE 575

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           D++ + +++   ++ LG+ P  + Y+ +L+A  ++ + +  +   +    +G +PN + +
Sbjct: 576 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 448 KCII-GMCSRRYEKAR-----------TLNEHVLSFNSGRPQIENKWTSL 485
             +I G+ +  + K              LN+++L     RP+  NK   L
Sbjct: 636 ITLIEGLANEDFLKETRDLLRELCSRGVLNKNLLE--EWRPKFSNKTVHL 683



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 159/368 (43%), Gaps = 8/368 (2%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P+  L T  ++ ++C   + S+ A +VLR  + +G   D   Y TL+    + G++DA  
Sbjct: 76  PDVYLCT-KLIRNLCRRGRTSDAA-RVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAAR 133

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +   M    + P+ +TY  +I G    G+V +A      M  +  +P  V +  L+ A 
Sbjct: 134 RLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAV 190

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +S    +A +VL EM A+     P+ +T   ++      G+VD ARE    +  Y  + 
Sbjct: 191 CKSTGFGQAMEVLDEMRAK--GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQP 248

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  +        WE    ++ +M +K  +P+EV    L+ F    G VE A ++L
Sbjct: 249 DTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVL 308

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++    G +      + ++           A +   +M S    P   +   ++  LC  
Sbjct: 309 EQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRA 368

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           ++     E+L +M      PN +T++  +    +K  +E   ML+ Q  E G   N+V +
Sbjct: 369 ERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTY 428

Query: 448 KCII-GMC 454
             ++ G C
Sbjct: 429 NALVNGFC 436


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 208/451 (46%), Gaps = 24/451 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDM--ERKGLLDMDKVYHAR----FFNVCKSQKAIKEA 80
           SYN L++    + R  E ++LL  M  +R G    D V +      FF    S KA    
Sbjct: 165 SYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTY 224

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P + T++ +++    ++  + A +VL  + + G+  DC  Y +++     S
Sbjct: 225 HEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 284

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+         +M + G+EPNV TY +L++   K G+  +A   +  M  + ++PD   +
Sbjct: 285 GQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATY 344

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRARE 255
             L+      GA       L EM+A +     + + PDH     L+ A A   +VD+A  
Sbjct: 345 RTLLQGYATKGA-------LVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAML 397

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           V+  + ++ +      Y   I+   ++G  + A   ++ M  +G+ P+ +  ++LI    
Sbjct: 398 VFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLC 457

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
              K + A E++ E  ++GI +  I ++S++ +        ++ +L++ M  I +KP + 
Sbjct: 458 TCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 517

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N LI   C   ++ +  ++L+ M S+G+ P+ +TY  L+    R   ++  L L  + 
Sbjct: 518 TYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEM 577

Query: 436 KEDGVIPNLVMFKCIIG--MCSRRYEKARTL 464
              GV PN++ +  I+     +RR   A+ L
Sbjct: 578 VSSGVSPNIITYNIILQGLFHTRRTAAAKEL 608



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 121/544 (22%), Positives = 228/544 (41%), Gaps = 75/544 (13%)

Query: 23  HDVSEQLHSYNRLIRQG--RISECID----LLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           H  +  +  YNR+ R G  +++  +     L+    R G LD+     A   NV      
Sbjct: 68  HSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLG---FAALGNV------ 118

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +K+ FR   +   P      +L  +CA  + S+    VLR + E G   D   Y  L+  
Sbjct: 119 VKKGFRVDAITFTP------LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKG 172

Query: 137 CAKSGKVDAMFEVFHEMVN---AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
                +     E+ H M +    G  P+V +Y  +++G  K G   KA+  Y  M  + +
Sbjct: 173 LCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGI 232

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            PD V ++++I A  ++ A+D+A +VL  M    + V PD +T  +++    ++GQ   A
Sbjct: 233 LPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK--NGVMPDCMTYNSILHGYCSSGQPKEA 290

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD---------- 303
               K +    ++     Y+  +N   + G    A  ++D MTK+G+ PD          
Sbjct: 291 IGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 350

Query: 304 ------EVFLSALIDFAGHAG-------------------KVEAAFEILQEAKNQGISVG 338
                  V + AL+D     G                   KV+ A  +  + +  G++  
Sbjct: 351 YATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPN 410

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           ++ Y +++     + +   A+  +E M    L P +    +LI  LC  D+  K  E++ 
Sbjct: 411 VVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELIL 470

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SR 456
           +M   G+C NTI ++ ++ +  ++  V     L       GV P+++ +  +I  C  + 
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAG 530

Query: 457 RYEKARTLNEHVLSFNSGRPQIENKWTSL-----------ALMVYREAIVAGTIPTVEVV 505
           + ++A  L   ++S    +P I    T +           AL +++E + +G  P +   
Sbjct: 531 KMDEATKLLASMVSVGV-KPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 589

Query: 506 SKVL 509
           + +L
Sbjct: 590 NIIL 593



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 176/391 (45%), Gaps = 15/391 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + GR +E   + + M ++GL + D   +        ++ A+ E      L+     
Sbjct: 314 NYLCKNGRSTEARKIFDSMTKRGL-EPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P    FN+L+   A  +  + A  V   +++ GL  +   Y T+I    KSG VD    
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F +M++ G+ PN+  Y +LI G     +  KA      M  + +  + + FN++I +  
Sbjct: 433 YFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHC 492

Query: 209 QSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           + G V   ++ FD++  +      V PD IT   L+  C  AG++D A ++   +    +
Sbjct: 493 KEGRVIESEKLFDLMVRIG-----VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     Y   IN   +    + A +++ +M   GV P+ +  + ++    H  +  AA E
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKE 607

Query: 326 ILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +       G  + + +Y+ ++ G C N     +AL +++++    L+    T N +I AL
Sbjct: 608 LYVSITKSGTQLELSTYNIILHGLCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGAL 666

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
               ++ +  ++ +   + GL P+  TYS++
Sbjct: 667 LKCGRMDEAKDLFAAHSANGLVPDVRTYSLM 697



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/199 (17%), Positives = 84/199 (42%), Gaps = 7/199 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +Y  LI    R  R+ + + L ++M   G+      Y+     +  +++     
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 606

Query: 81  FRFFKLVPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             +  +  + T   LST+N+++     +  ++ A ++ + +    L+ + + +  +I   
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 666

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G++D   ++F      G+ P+V TY  + +   + G + +    +  M       D 
Sbjct: 667 LKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADS 726

Query: 198 VVFNALITACGQSGAVDRA 216
            + N+++    Q G + RA
Sbjct: 727 RMLNSIVRKLLQRGDITRA 745


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/451 (23%), Positives = 208/451 (46%), Gaps = 24/451 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDM--ERKGLLDMDKVYHAR----FFNVCKSQKAIKEA 80
           SYN L++    + R  E ++LL  M  +R G    D V +      FF    S KA    
Sbjct: 165 SYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTY 224

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P + T++ +++    ++  + A +VL  + + G+  DC  Y +++     S
Sbjct: 225 HEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS 284

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+         +M + G+EPNV TY +L++   K G+  +A   +  M  + ++PD   +
Sbjct: 285 GQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATY 344

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRARE 255
             L+      GA       L EM+A +     + + PDH     L+ A A   +VD+A  
Sbjct: 345 RTLLQGYATKGA-------LVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAML 397

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           V+  + ++ +      Y   I+   ++G  + A   ++ M  +G+ P+ +  ++LI    
Sbjct: 398 VFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLC 457

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
              K + A E++ E  ++GI +  I ++S++ +        ++ +L++ M  I +KP + 
Sbjct: 458 TCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 517

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N LI   C   ++ +  ++L+ M S+G+ P+ +TY  L+    R   ++  L L  + 
Sbjct: 518 TYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEM 577

Query: 436 KEDGVIPNLVMFKCIIG--MCSRRYEKARTL 464
              GV PN++ +  I+     +RR   A+ L
Sbjct: 578 VSSGVSPNIITYNIILQGLFHTRRTAAAKEL 608



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 121/544 (22%), Positives = 228/544 (41%), Gaps = 75/544 (13%)

Query: 23  HDVSEQLHSYNRLIRQG--RISECID----LLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           H  +  +  YNR+ R G  +++  +     L+    R G LD+     A   NV      
Sbjct: 68  HSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLG---FAALGNV------ 118

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +K+ FR   +   P      +L  +CA  + S+    VLR + E G   D   Y  L+  
Sbjct: 119 VKKGFRVDAITFTP------LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKG 172

Query: 137 CAKSGKVDAMFEVFHEMVN---AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
                +     E+ H M +    G  P+V +Y  +++G  K G   KA+  Y  M  + +
Sbjct: 173 LCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGI 232

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            PD V ++++I A  ++ A+D+A +VL  M    + V PD +T  +++    ++GQ   A
Sbjct: 233 LPDVVTYSSIIAALCKAQAMDKAMEVLNTMVK--NGVMPDCMTYNSILHGYCSSGQPKEA 290

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD---------- 303
               K +    ++     Y+  +N   + G    A  ++D MTK+G+ PD          
Sbjct: 291 IGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 350

Query: 304 ------EVFLSALIDFAGHAG-------------------KVEAAFEILQEAKNQGISVG 338
                  V + AL+D     G                   KV+ A  +  + +  G++  
Sbjct: 351 YATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPN 410

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           ++ Y +++     + +   A+  +E M    L P +    +LI  LC  D+  K  E++ 
Sbjct: 411 VVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELIL 470

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SR 456
           +M   G+C NTI ++ ++ +  ++  V     L       GV P+++ +  +I  C  + 
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAG 530

Query: 457 RYEKARTLNEHVLSFNSGRPQIENKWTSL-----------ALMVYREAIVAGTIPTVEVV 505
           + ++A  L   ++S    +P I    T +           AL +++E + +G  P +   
Sbjct: 531 KMDEATKLLASMVSVGV-KPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITY 589

Query: 506 SKVL 509
           + +L
Sbjct: 590 NIIL 593



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 176/391 (45%), Gaps = 15/391 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + GR +E   + + M ++GL + D   +        ++ A+ E      L+     
Sbjct: 314 NYLCKNGRSTEARKIFDSMTKRGL-EPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P    FN+L+   A  +  + A  V   +++ GL  +   Y T+I    KSG VD    
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F +M++ G+ PN+  Y +LI G     +  KA      M  + +  + + FN++I +  
Sbjct: 433 YFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHC 492

Query: 209 QSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           + G V   ++ FD++  +      V PD IT   L+  C  AG++D A ++   +    +
Sbjct: 493 KEGRVIESEKLFDLMVRIG-----VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGV 547

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     Y   IN   +    + A +++ +M   GV P+ +  + ++    H  +  AA E
Sbjct: 548 KPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKE 607

Query: 326 ILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +       G  + + +Y+ ++ G C N     +AL +++++    L+    T N +I AL
Sbjct: 608 LYVSITKSGTQLELSTYNIILHGLCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGAL 666

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
               ++ +  ++ +   + GL P+  TYS++
Sbjct: 667 LKCGRMDEAKDLFAAHSANGLVPDVRTYSLM 697



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 35/199 (17%), Positives = 84/199 (42%), Gaps = 7/199 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +Y  LI    R  R+ + + L ++M   G+      Y+     +  +++     
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 606

Query: 81  FRFFKLVPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             +  +  + T   LST+N+++     +  ++ A ++ + +    L+ + + +  +I   
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGAL 666

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G++D   ++F      G+ P+V TY  + +   + G + +    +  M       D 
Sbjct: 667 LKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADS 726

Query: 198 VVFNALITACGQSGAVDRA 216
            + N+++    Q G + RA
Sbjct: 727 RMLNSIVRKLLQRGDITRA 745


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 127/559 (22%), Positives = 231/559 (41%), Gaps = 69/559 (12%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           G+ A + HDV       N L+ +   S+C  + E+M + G+                   
Sbjct: 110 GEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGI------------------- 150

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
                         P   +FN+L+   A ++ ++ A     +++    K D   +  L+ 
Sbjct: 151 -------------APNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVD 197

Query: 136 TCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
              K+G  +  FEVFHEM+  G + P+   + A++    KA +V +A   +G M      
Sbjct: 198 CLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFP 257

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD + +N +I    ++G    A  VL  M A+     P  +T G L+ +   AG ++RA 
Sbjct: 258 PDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKA--CVPTEVTYGILVNSLCKAGTLERAE 315

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E+++++     +    +YT  I+  +++G  + ACS++D+M + G  PD +  + +ID  
Sbjct: 316 ELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGL 375

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             +G  E A +  +E    G    +++Y++++   S       A  + + M +    P  
Sbjct: 376 CKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDS 435

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL-- 432
            T   L+   C   +L +  ++L ++      PN   YS L+        VE  L  L  
Sbjct: 436 VTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFE 495

Query: 433 -SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR 491
            S+A  + + P L     I+G+C     K   L+E                   A  +++
Sbjct: 496 QSKAAAENLDPGLCC-SIIVGLC-----KTGRLDE-------------------ACRIFQ 530

Query: 492 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL-----VENLGVSADALKRSNLCSLIDG 546
             +  G  P     + ++  L       +         +E +G   DA+  + LC  +  
Sbjct: 531 RMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCK 590

Query: 547 FGEYDPRAFSLLEEAASFG 565
            GE D RA  +LEEA+S G
Sbjct: 591 IGEVD-RAVKMLEEASSRG 608



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 120/571 (21%), Positives = 225/571 (39%), Gaps = 56/571 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPT 91
           L++  R+ E  ++   ME+ G       Y+     + K+   Q+A+K           PT
Sbjct: 235 LLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPT 294

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+ +L++    +   E A ++ R++  +G + +  +YT+LI   AKSG++     +F 
Sbjct: 295 EVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFD 354

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EMV AG  P+V T+  +IDG  K+G   +A  ++  M     KP+ V +  +I    + G
Sbjct: 355 EMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIG 414

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V  AF ++  M A  H   PD +T   L+      G++D A ++   + K +     ++
Sbjct: 415 RVANAFRIMKGMIA--HGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQL 472

Query: 272 YTIAIN------------------------------CCS------QTGDWEFACSVYDDM 295
           Y+  +                               CCS      +TG  + AC ++  M
Sbjct: 473 YSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRM 532

Query: 296 TKKGVIPDEVFLSALID--FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
             +G  PD    + LI+        +VE AF +L + +  G     ++Y+ L        
Sbjct: 533 VSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIG 592

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
              +A+++ E   S      V    AL T LC   Q+ + + +  +M   G  P+   Y 
Sbjct: 593 EVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYC 652

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS--------RRYEKARTL 464
            ++    +   +E       +    G  P +  +  ++  +C          R+E     
Sbjct: 653 CIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLAR 712

Query: 465 NEHVLSFNSGRPQIENKWTSL----ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADI 520
            E V S       I     +L    AL ++ + I  G +PT    + +   L      + 
Sbjct: 713 GELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEK 772

Query: 521 RERLVENLGVSADALKRSNLCSLIDGFGEYD 551
            + L++ +         +   +++DG  + D
Sbjct: 773 AQELLQEMAAGGSPPHAATFTAILDGLRKSD 803



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 167/398 (41%), Gaps = 11/398 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L + GR++    +++ M   G       Y       CK  + + EA +      K   +P
Sbjct: 410 LSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR-LDEAAQLLDELDKCSSSP 468

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            L  ++ L+  +C           +    + A    D  L  ++I    K+G++D    +
Sbjct: 469 NLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRI 528

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           F  MV+ G +P+  TY  LI+G  ++   +V +AF     +      PD V +  L    
Sbjct: 529 FQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGL 588

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G VDRA  +L E  A     + D +   AL       GQVDRA  +++ + +     
Sbjct: 589 CKIGEVDRAVKMLEE--ASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   IN   +    E AC  +D+M  KG  P     +AL+    HAG V+ AF   
Sbjct: 647 DAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRF 706

Query: 328 QEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +    +G  VG ++ Y +L+     A     AL+L+E M S    PT  T  +L   L  
Sbjct: 707 EGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVR 766

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
             +  K  E+L +M + G  P+  T++ +L    + D+
Sbjct: 767 SGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDE 804



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/434 (23%), Positives = 180/434 (41%), Gaps = 49/434 (11%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    + G   E + +L++M  K  +  +  Y     ++CK+   ++ A   F++
Sbjct: 262 AYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKA-GTLERAEELFRV 320

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P    +  L+   A S   + A  +   + EAG + D   +T +I    KSG 
Sbjct: 321 MAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGN 380

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            +   + F EM+  G +PNV TY  +I G +K G+VA AF     M +    PD V +  
Sbjct: 381 FEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYIC 440

Query: 203 LITACGQSGAVDRAFDVLAEMN------------------------------------AE 226
           L+    + G +D A  +L E++                                    A 
Sbjct: 441 LLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAA 500

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGD 284
              +DP  +    ++  C   G++D A  +++ +     K     Y I IN  C S+   
Sbjct: 501 AENLDPG-LCCSIIVGLC-KTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENR 558

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            E A ++  D+   G +PD V  + L       G+V+ A ++L+EA ++G +  +++Y++
Sbjct: 559 VERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTA 618

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L           +A+ L++ M      P  +    +I  L  G +L    +   +M   G
Sbjct: 619 LCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKG 678

Query: 405 LCPNTITYSILLVA 418
             P   TY+ L+ A
Sbjct: 679 QKPTVATYTALVQA 692



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 110/484 (22%), Positives = 194/484 (40%), Gaps = 56/484 (11%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKL 86
           Y  LI    + GR+ E   L ++M   G    D + H    + +CKS    + A  F ++
Sbjct: 333 YTSLIHGFAKSGRMKEACSLFDEMVEAGYRP-DVITHTVMIDGLCKSGNFEQAAKSFEEM 391

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +     P + T+  ++   +       AF++++ +   G   D   Y  L+    K G++
Sbjct: 392 MRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRL 451

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDG------------------------------CA 173
           D   ++  E+      PN+  Y +L+ G                              C+
Sbjct: 452 DEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCS 511

Query: 174 ------KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNA 225
                 K G++ +A   +  M S+  KPD   +N LI    +S    V+RAF +L ++  
Sbjct: 512 IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL-- 569

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQT 282
           E+    PD +T   L       G+VDRA    KM+ + + +G       YT         
Sbjct: 570 EMVGYLPDAVTYTPLCIGLCKIGEVDRA---VKMLEEASSRGWNADVVAYTALCTGLCYQ 626

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G  + A S++ +M ++G  PD      +I+      K+E A +   E   +G    + +Y
Sbjct: 627 GQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATY 686

Query: 343 SSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           ++L+ A  +A N  +A   +E M +  +L  +V   +ALI   C   ++   +++  DM 
Sbjct: 687 TALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMI 746

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 461
           S G  P  +T + L     R    E    LL +    G  P+   F  I+    +  E  
Sbjct: 747 SRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESG 806

Query: 462 RTLN 465
           + L 
Sbjct: 807 KLLK 810



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 158/350 (45%), Gaps = 15/350 (4%)

Query: 26  SEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEA 80
           S  L  Y+ L++     G +   +D L +  +    ++D  +  +    +CK+ + + EA
Sbjct: 467 SPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGR-LDEA 525

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLI 134
            R F+ + +    P  +T+N+L++    S+++  E AF +L  ++  G   D   YT L 
Sbjct: 526 CRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLC 585

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K G+VD   ++  E  + G   +V  Y AL  G    GQV +A   +  M  +   
Sbjct: 586 IGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGA 645

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD   +  +I    +   ++ A     EM  +     P   T  AL++A  +AG VD A 
Sbjct: 646 PDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQ--KPTVATYTALVQALCHAGNVDEAF 703

Query: 255 EVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             ++ M+ +  + G+  +Y   I+   +    + A  +++DM  +G +P  V  ++L D 
Sbjct: 704 HRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDG 763

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
              +GK E A E+LQE    G      ++++++     +    K L+L +
Sbjct: 764 LVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQ 813


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 197/468 (42%), Gaps = 40/468 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAF-RFFKLVPN 89
           N +  QG + E + LL  +   G       Y+A    +C +++   ++E      ++   
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN L+     +   E   +VL  + E G   D ++Y T+I    K G ++   E+
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M + G++PNV  Y  ++ G   A +  +A      M  K+   D V FN L+    Q
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G VDR  ++L +M +  H   PD IT   ++      G +D A  + K +     K   
Sbjct: 369 NGLVDRVIELLEQMLS--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA--------------- 314
             YTI +      G W  A  +   M ++G  P+ V  + LI+F                
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 315 --------------------GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
                               G AGK E A E+L    N+GIS   I YSS+  A S    
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGR 546

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             K +++++++K   ++      NA+I++LC   +  + ++  + M S G  PN  TY++
Sbjct: 547 VNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTM 606

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
           L+     +   +    LLS+    G +   +M    I  C++   K +
Sbjct: 607 LIKGLASEGLAKEAQELLSELCSRGALRKHLMRHFGISNCTQENGKQK 654



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/468 (22%), Positives = 189/468 (40%), Gaps = 40/468 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L  +GRI++ +++L++M  KG   +  +YH      C+S       FR            
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSG-----GFR------------ 163

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
                           + +VL  +   G   D      ++    + G VD    +  ++ 
Sbjct: 164 ---------------NSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLA 208

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G E ++ +Y A++ G   A +          M   +  P+ V FN LI    ++G  +
Sbjct: 209 FFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFE 268

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           R  +VLA+M+   H   PD      ++      G ++ A E+   +  Y +K     Y  
Sbjct: 269 RVHEVLAQMSE--HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            +        W+ A  +  +M +K    D+V  + L+DF    G V+   E+L++  + G
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
               +I+Y++++          +A+ L + M S   KP   +   ++  LC   +     
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII--- 451
           E++S M   G  PN +T++ L+    +K  VE  + LL Q   +G  P+L+ +  +I   
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506

Query: 452 GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 499
           G   +  E    LN  V   N G       ++S+A  + RE  V   I
Sbjct: 507 GKAGKTEEALELLNVMV---NKGISPNTIIYSSIACALSREGRVNKVI 551



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 2/238 (0%)

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
           PV P+  T   +++     G++  A EV   +        P +Y + +    ++G +  +
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNS 165

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             V + M  KG   D    + +++     G V+ A  +L++    G    I+SY++++  
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              AK W    EL + M  +   P + T N LI  LC      +  EVL+ M   G  P+
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 464
              Y+ ++    ++  +EV   +L++    G+ PN+V +  ++ G+CS  R+++A  L
Sbjct: 286 IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEEL 343


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 206/469 (43%), Gaps = 43/469 (9%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           Q ++L +E     +   Y +LI    K+GK+D  +E+  EM + GI P V  +  +I G 
Sbjct: 16  QAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGL 75

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
            KAG+   A G +  +      PD + FN L+ A  +SG V+ AF +   M+     + P
Sbjct: 76  CKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCL-P 134

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           + +T   ++      G++DRA E+  ++++         Y++ +    + G  +   ++ 
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            +MT++G  PD +  + L++    + +++ A E++Q     G    +++Y+SLM     +
Sbjct: 195 QEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRS 254

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           K   +A  L + M      P V   N +I  LC   +L     +L  M +    P+ ITY
Sbjct: 255 KQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITY 314

Query: 413 SILLVA-CE--RKD---DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLN 465
           S ++   C+  R D    +E    +L   K+ G  PN   +  +I G+C  R  +     
Sbjct: 315 STIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQ---- 370

Query: 466 EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 525
                               AL + R  I +  +P +   S V+G L   ++ D   ++ 
Sbjct: 371 --------------------ALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKI- 409

Query: 526 ENLGVSADALKRSN---LCSLIDGF---GEYDP--RAFSLLEEAASFGI 566
              G+ ++   + N     +LIDG    GE D   R F L+ E+   G+
Sbjct: 410 --FGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGV 456



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 180/382 (47%), Gaps = 13/382 (3%)

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           + FR  + VPN   +  +++  +C + K  + A+++L  +++ G+     ++  +I    
Sbjct: 19  QLFREERCVPN-EFTYGSLIHGLCKAGKLDQ-AYELLDEMRDRGIPPGVAVHNGVIKGLC 76

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR-SKNVKPDR 197
           K+G+       F  +      P++ T+  L+D   K+G+V +AF  +  M  S    P+ 
Sbjct: 77  KAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNV 136

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V +  +I    + G +DRA ++L  MN       P+ IT   L++    AG+ D+   + 
Sbjct: 137 VTYTTVINGLCKDGKLDRAIELLDLMNET--GCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + + +   +    +Y   +N   ++   + A  +   M + G  P  V  ++L++    +
Sbjct: 195 QEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRS 254

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVST 376
            +V+ AF ++Q    +G    +I+Y++++ G C +A+    A  L + M + +  P V T
Sbjct: 255 KQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR-LDDAQALLKQMVAARCVPDVIT 313

Query: 377 MNALITALC-----DGD-QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            + +I  LC     D D +L    E+L  MK  G  PN  TY++++    R    +  L 
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA 373

Query: 431 LLSQAKEDGVIPNLVMFKCIIG 452
           LL +  +  V+P+L  F  +IG
Sbjct: 374 LLRRMIDSEVVPDLSSFSMVIG 395



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/435 (21%), Positives = 186/435 (42%), Gaps = 16/435 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN---- 89
           L++ GR+ E   + E M        + V +    N +CK  K +  A     L+      
Sbjct: 110 LVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGK-LDRAIELLDLMNETGCC 168

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+++L+     +  ++  F +L+ +   G + D  +Y TL+    KS ++D   E+
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M+ +G  P V TY +L++   ++ QV +AF    +M  +   PD + +N +I    +
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD------RAREVYKMIHKY 263
              +D A  +L +M A      PD IT   ++       +VD       A E+ +M+ + 
Sbjct: 289 DARLDDAQALLKQMVAA--RCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQT 346

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                   Y + I    +    + A ++   M    V+PD    S +I     +  ++AA
Sbjct: 347 GCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAA 406

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           ++I      +      ++Y++L+   S      KA+ ++E M     +P V+T N+++  
Sbjct: 407 YKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVATYNSVLDG 465

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++ + + ++  M      P+  +Y  L+    R   VE    L    +  G    
Sbjct: 466 LCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAME 525

Query: 444 LVMFKCIIG-MCSRR 457
           + ++  ++  +C ++
Sbjct: 526 VGVYNVLVNELCKKK 540



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 169/368 (45%), Gaps = 18/368 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + GR  +   LL++M R+G      +Y+     +CKS++ + EA    +L+      P
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR-LDEALELVQLMIRSGCYP 239

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+ T+N LM +   SK  + AF++++++ E G   D   Y T+I    +  ++D    + 
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQV------AKAFGAYGIMRSKNVKPDRVVFNALI 204
            +MV A   P+V TY  +IDG  K  +V        A     +M+     P+   +  +I
Sbjct: 300 KQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVI 359

Query: 205 TACGQSGAVDRAFDVLAEM-NAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
               ++    +A  +L  M ++EV P +    + IG+L K+      +D A +++ M+ +
Sbjct: 360 EGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS----HDLDAAYKIFGMMSE 415

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              K  P  Y   I+  S+ G+ + A  V++ M +    P     ++++D     G++E 
Sbjct: 416 RECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEE 474

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  +++   ++       SY +L+         ++A EL++ +++      V   N L+ 
Sbjct: 475 AVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVN 534

Query: 383 ALCDGDQL 390
            LC   +L
Sbjct: 535 ELCKKKRL 542



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 143/336 (42%), Gaps = 14/336 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L +  R+ E ++L++ M R G       Y++     C+S K +  AFR  +++     
Sbjct: 214 NGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRS-KQVDRAFRLIQVMSERGC 272

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P +  +N +++        + A  +L+ +  A    D   Y+T+I    K  +VDA + 
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWK 332

Query: 148 -----EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                E+   M   G  PN  TY  +I+G  +A +  +A      M    V PD   F+ 
Sbjct: 333 LEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSM 392

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I +  +S  +D A+ +   M+       P+ +   AL+   +  G+VD+A  V++++ +
Sbjct: 393 VIGSLCKSHDLDAAYKIFGMMSE--RECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE 450

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
               G     ++    C   G  E A  + + M  K   PD     ALI        VE 
Sbjct: 451 SFRPGVATYNSVLDGLCG-VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEE 509

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           A+E+ Q  + +G ++ +  Y+ L+      K    A
Sbjct: 510 AYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDA 545


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/489 (23%), Positives = 216/489 (44%), Gaps = 41/489 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L+S  +S    E AF+++  +   G       Y T+I    K GK +   EV
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM+ +G+ P+  TY +L+    K G V +    +  MRS++V PD V F+++++   +
Sbjct: 328 FAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTR 387

Query: 210 SGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNI 265
           SG +D+A   F+ + E       + PD++    L++     G +  A  +  +M+ +   
Sbjct: 388 SGNLDKALMYFNSVKEAG-----LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCA 442

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                  TI    C +    E A  ++++MT++ + PD   L+ LID     G ++ A E
Sbjct: 443 MDVVTYNTILHGLCKRKMLGE-ADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAME 501

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + Q+ K + I + +++Y++L+       +   A E++  M S ++ PT  + + L+ ALC
Sbjct: 502 LFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALC 561

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L +   V  +M S  + P  +  + ++    R  +   G   L +   +G +P+ +
Sbjct: 562 SKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCI 621

Query: 446 MFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV 505
            +  +I                      G  + EN   +  L+   E    G +P V   
Sbjct: 622 SYNTLI---------------------YGFVREENMSKAFGLVKKMEEEQGGLVPDVFTY 660

Query: 506 SKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLE 559
           + +L       Q+     +  +++E  GV+ D   RS    +I+GF   D    AF + +
Sbjct: 661 NSILHGFCRQNQMKEAEVVLRKMIER-GVNPD---RSTYTCMINGFVSQDNLTEAFRIHD 716

Query: 560 EAASFGIVP 568
           E    G  P
Sbjct: 717 EMLQRGFSP 725



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 96/436 (22%), Positives = 186/436 (42%), Gaps = 23/436 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAF-RF 83
           +YN LI     +G + E  +L+  M  KG       Y+     +CK  K    KE F   
Sbjct: 272 TYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEM 331

Query: 84  FKLVPNPTLSTF-NMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +   +P  +T+ ++LM  C      ++E  F  +R      +  D   ++++++   +S
Sbjct: 332 LRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMR---SRDVVPDLVCFSSMMSLFTRS 388

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G +D     F+ +  AG+ P+   Y  LI G  + G ++ A      M  +    D V +
Sbjct: 389 GNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTY 448

Query: 201 NALITA-CGQS--GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           N ++   C +   G  D+ F+ + E       + PD  T+  L+      G +  A E++
Sbjct: 449 NTILHGLCKRKMLGEADKLFNEMTE-----RALFPDSYTLTILIDGHCKLGNLQNAMELF 503

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + + +  I+     Y   ++   + GD + A  ++ DM  K ++P  +  S L++     
Sbjct: 504 QKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSK 563

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G +  AF +  E  ++ I   ++  +S++     + N        E M S    P   + 
Sbjct: 564 GHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISY 623

Query: 378 NALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           N LI      + + K   ++  M+    GL P+  TY+ +L    R++ ++   ++L + 
Sbjct: 624 NTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKM 683

Query: 436 KEDGVIPNLVMFKCII 451
            E GV P+   + C+I
Sbjct: 684 IERGVNPDRSTYTCMI 699



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 171/385 (44%), Gaps = 59/385 (15%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           Q+ + +    F    + +LS   M+  +  S + S+    +LR+++ +G+ +  ++  +L
Sbjct: 96  QRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGV-SRLEIVNSL 154

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
            +T +  G  D++F++            + TY        +A ++ +A  A+ ++RSK  
Sbjct: 155 DSTFSNCGSNDSVFDLL-----------IRTY-------VQARKLREAHEAFTLLRSKG- 195

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
                 F   I AC                               AL+ +    G V+ A
Sbjct: 196 ------FTVSIDACN------------------------------ALIGSLVRIGWVELA 219

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             VY+ I +  +        I +N   + G  E   +    + +KGV PD V  + LI  
Sbjct: 220 WGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISA 279

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKP 372
               G +E AFE++     +G S G+ +Y++++ G C + K +++A E++  M    L P
Sbjct: 280 YSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGK-YERAKEVFAEMLRSGLSP 338

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
             +T  +L+   C    + +T +V SDM+S  + P+ + +S ++    R  +++  LM  
Sbjct: 339 DSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYF 398

Query: 433 SQAKEDGVIPNLVMFKCII-GMCSR 456
           +  KE G+IP+ V++  +I G C +
Sbjct: 399 NSVKEAGLIPDNVIYTILIQGYCRK 423



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 133/310 (42%), Gaps = 42/310 (13%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           R+G IS  ++L  +M ++G   MD V Y+     +CK +K + EA + F  +      P 
Sbjct: 422 RKGMISVAMNLRNEMLQQGCA-MDVVTYNTILHGLCK-RKMLGEADKLFNEMTERALFPD 479

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T  +L+       + + A ++ + ++E  ++ D   Y TL+    K G +D   E++ 
Sbjct: 480 SYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWA 539

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +MV+  I P   +Y  L++     G +A+AF  +  M SKN+KP  ++ N++I    +SG
Sbjct: 540 DMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSG 599

Query: 212 A-----------------------------------VDRAFDVLAEMNAEVHPVDPDHIT 236
                                               + +AF ++ +M  E   + PD  T
Sbjct: 600 NASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFT 659

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +++       Q+  A  V + + +  +      YT  IN      +   A  ++D+M 
Sbjct: 660 YNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEML 719

Query: 297 KKGVIPDEVF 306
           ++G  PD+ F
Sbjct: 720 QRGFSPDDKF 729



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 115/268 (42%), Gaps = 26/268 (9%)

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D VF   LI     A K+  A E     +++G +V I + ++L+G+       + A  +Y
Sbjct: 165 DSVF-DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           + +    +   V T+N ++ ALC   ++ K    LS ++  G+ P+ +TY+ L+ A   K
Sbjct: 224 QEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSK 283

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIEN 480
             +E    L++     G  P +  +  +I G+C   +YE+A+ +   +L   SG      
Sbjct: 284 GLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEML--RSGLSPDST 341

Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 540
            + SL +    EA   G +   E V            +D+R R      V  D +  S++
Sbjct: 342 TYRSLLM----EACKKGDVVETEKVF-----------SDMRSR-----DVVPDLVCFSSM 381

Query: 541 CSLIDGFGEYDPRAFSLLEEAASFGIVP 568
            SL    G  D +A          G++P
Sbjct: 382 MSLFTRSGNLD-KALMYFNSVKEAGLIP 408



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 33/169 (19%), Positives = 72/169 (42%), Gaps = 5/169 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L  +G ++E   + ++M  K +     + ++     C+S  A        K++     
Sbjct: 558 NALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFV 617

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKSGKVDAMF 147
           P   ++N L+      ++   AF +++ ++E   GL  D   Y +++    +  ++    
Sbjct: 618 PDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAE 677

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
            V  +M+  G+ P+  TY  +I+G      + +AF  +  M  +   PD
Sbjct: 678 VVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726


>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
 gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
          Length = 822

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 200/432 (46%), Gaps = 13/432 (3%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
            +Y+ LI    R G+    ++L++DM R  +      Y+    N C S    ++A    K
Sbjct: 179 ETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYN-NLINACGSSGNWRQALEVCK 237

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + +    P L T N+++S   S +    A     L++ A ++ D   +  +I   +K G
Sbjct: 238 KMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLG 297

Query: 142 KVDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +     +VF+ M +   E  P+V T+ +++   +  G++      +  M ++ +KP+ V 
Sbjct: 298 QSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVS 357

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +NAL+ A    G  + A  V  ++  + + + PD ++  +L+ +   + Q  +A+EV+ M
Sbjct: 358 YNALMGAYAVHGMSENALSVFGDI--KRNGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLM 415

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + K   K     Y   I+     G    A  ++  M + G  P+ V +  L+     + K
Sbjct: 416 MRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKK 475

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
                 +L  A+++GI++   +Y+S +G+  NA   +KA+ LY+ M+  K+K    T   
Sbjct: 476 KVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTMRKKKVKADSVTFTI 535

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI+  C   + P+ +  L +M+ L +      YS +L A  ++  V     + +Q K  G
Sbjct: 536 LISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAG 595

Query: 440 VIPNLVMFKCII 451
             P+++ +  ++
Sbjct: 596 CKPDVIAYTSML 607



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 178/426 (41%), Gaps = 47/426 (11%)

Query: 35  LIRQGRISECIDLLEDME-------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           L R+G I  C+++ + M+       R  + +M    HAR   V +++      F   K  
Sbjct: 117 LSRRGCIELCVNVFKWMKSQKNYCARNDIYNMMIRLHARHNWVDQARGLF---FEMQKWS 173

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P   T++ L++    +     A  ++  +  A +      Y  LI  C  SG      
Sbjct: 174 CKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWRQAL 233

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           EV  +M + G+ P++ T+  ++       Q +KA   + +M+   V+PD   FN +I   
Sbjct: 234 EVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCL 293

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G   +A DV   M  +     PD +T  ++M   +  G+++  R V++ +    +K 
Sbjct: 294 SKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKP 353

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   +   +  G  E A SV+ D+ + G++PD                        
Sbjct: 354 NIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPD------------------------ 389

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                      ++SY+SL+ +   ++   KA E++  M+  + KP V T NALI A    
Sbjct: 390 -----------VVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSN 438

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPNLVM 446
             L + +E+   M+  G  PN ++   LL AC R K  V V   +LS A+  G+  N   
Sbjct: 439 GFLAEAVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNVE-TVLSAAQSRGINLNTAA 497

Query: 447 FKCIIG 452
           +   IG
Sbjct: 498 YNSAIG 503



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 164/376 (43%), Gaps = 2/376 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TF  +M + +   + E    V   +   GLK +   Y  L+   A  G  +    V
Sbjct: 318 PDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSV 377

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F ++   GI P+V +Y +L++   ++ Q  KA   + +MR +  KP+ V +NALI A G 
Sbjct: 378 FGDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGS 437

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +  A ++  +M  E     P+ +++  L+ AC+ + +      V        I    
Sbjct: 438 NGFLAEAVEIFRQM--EQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNT 495

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y  AI       + E A ++Y  M KK V  D V  + LI  +    K   A   L+E
Sbjct: 496 AAYNSAIGSYINAAELEKAIALYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKE 555

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            ++  I +    YSS++ A S      +A  ++  MK    KP V    +++ A    ++
Sbjct: 556 MEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEK 615

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             K  E+  +M++ G+ P++I  S L+ A  +        +L+   +E  V     +F  
Sbjct: 616 WGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEVPFTGAVFFE 675

Query: 450 IIGMCSRRYEKARTLN 465
           I   C+   E  R ++
Sbjct: 676 IFSACNTLQEWKRAID 691



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 96/447 (21%), Positives = 184/447 (41%), Gaps = 11/447 (2%)

Query: 18  HANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
            A  A  +   + SYN L+      G     + +  D++R G++  D V +    N    
Sbjct: 344 EAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVP-DVVSYTSLLNSYGR 402

Query: 74  QKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            +   +A   F ++      P + T+N L+    S+     A ++ R +++ G K +   
Sbjct: 403 SRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGTKPNVVS 462

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
             TL+  C++S K   +  V     + GI  N   Y + I     A ++ KA   Y  MR
Sbjct: 463 VCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTMR 522

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            K VK D V F  LI+   +      A   L EM     P+  +     +++ A +  GQ
Sbjct: 523 KKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKE--VYSSVLCAYSKQGQ 580

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           V  A  ++  +     K     YT  ++  + +  W  AC ++ +M   G+ PD +  SA
Sbjct: 581 VTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSA 640

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           L+      G+    F ++   + + +      +  +  AC+  + W++A++L + M    
Sbjct: 641 LMRAFNKGGQPSNVFVLMDLMREKEVPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYL 700

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
              ++   N ++       ++   M++   + + G+  N  TY+ILL       +    +
Sbjct: 701 PSLSIGLTNQMLYLFGKSGKVEAMMKLFYKIIASGVEINFKTYAILLEHLLAVGNWRKYI 760

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            +L    + G+ P+  M++ II    R
Sbjct: 761 EVLEWMSDAGIQPSNQMYRDIISFGER 787



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/374 (20%), Positives = 156/374 (41%), Gaps = 50/374 (13%)

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           G++ S   +  R  F  LI    + G ++   +V   M ++ +    + I    +++  A
Sbjct: 96  GVLNSWVGRFARKNFPVLIRELSRRGCIELCVNVFKWMKSQKNYCARNDI-YNMMIRLHA 154

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
               VD+AR ++  + K++ K   E Y   IN   + G W +A ++ DDM +  + P   
Sbjct: 155 RHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRS 214

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + LI+  G +G    A E+ ++  + G+   +++++ ++ A  + + + KAL  +E M
Sbjct: 215 TYNNLINACGSSGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELM 274

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK------------------------ 401
           K  K++P  +T N +I  L    Q  + ++V + M+                        
Sbjct: 275 KGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRG 334

Query: 402 -------------SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
                        + GL PN ++Y+ L+ A       E  L +    K +G++P++V + 
Sbjct: 335 EIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYT 394

Query: 449 CIIGMCSRRYEKARTLNEHVLSFNSGR-PQI-----------ENKWTSLALMVYREAIVA 496
            ++    R  +  +     ++     R P +            N + + A+ ++R+    
Sbjct: 395 SLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQD 454

Query: 497 GTIPTVEVVSKVLG 510
           GT P V  V  +L 
Sbjct: 455 GTKPNVVSVCTLLA 468



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 123/306 (40%), Gaps = 21/306 (6%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           I    + + I L + M +K +      +       C+  K   EA  + K + + ++   
Sbjct: 506 INAAELEKAIALYQTMRKKKVKADSVTFTILISGSCRMSK-YPEAISYLKEMEDLSIPLT 564

Query: 96  NMLMS--VCASSK-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             + S  +CA SK     ++E  F  +++   AG K D   YT+++     S K     E
Sbjct: 565 KEVYSSVLCAYSKQGQVTEAESIFNQMKM---AGCKPDVIAYTSMLHAYNASEKWGKACE 621

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM   GIEP+     AL+    K GQ +  F    +MR K V     VF  + +AC 
Sbjct: 622 LFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEVPFTGAVFFEIFSACN 681

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                 RA D++  M+    P  P  ++IG   +     G+  +   + K+ +K    G 
Sbjct: 682 TLQEWKRAIDLIQMMD----PYLPS-LSIGLTNQMLYLFGKSGKVEAMMKLFYKIIASGV 736

Query: 269 P---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
               + Y I +      G+W     V + M+  G+ P       +I F   +  +E  FE
Sbjct: 737 EINFKTYAILLEHLLAVGNWRKYIEVLEWMSDAGIQPSNQMYRDIISFGERSAGIE--FE 794

Query: 326 ILQEAK 331
            L   K
Sbjct: 795 PLIRQK 800



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +  LH+YN   + G+  E   L  +ME  G+ + D +  +               F    
Sbjct: 604 TSMLHAYNASEKWGKACE---LFLEMEANGI-EPDSIACSALMRAFNKGGQPSNVFVLMD 659

Query: 86  LVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           L+       T + F  + S C + ++ + A  +++++          L   ++    KSG
Sbjct: 660 LMREKEVPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLYLFGKSG 719

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KV+AM ++F++++ +G+E N  TY  L++     G   K       M    ++P   ++ 
Sbjct: 720 KVEAMMKLFYKIIASGVEINFKTYAILLEHLLAVGNWRKYIEVLEWMSDAGIQPSNQMYR 779

Query: 202 ALITACGQSGAVD 214
            +I+   +S  ++
Sbjct: 780 DIISFGERSAGIE 792


>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
 gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 181/393 (46%), Gaps = 14/393 (3%)

Query: 81  FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           FR+ K   N    T  +NM++ + A    ++ A  +   +Q+   K D +    LI    
Sbjct: 122 FRWMKNQRNYCARTDIYNMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHG 181

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           +SG+      +  +M+   I P+  TY  LI+ C  +G   +A      M    V PD V
Sbjct: 182 RSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDLV 241

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
             N +++A        +A      M      + PD  T+  ++      GQ ++A  ++K
Sbjct: 242 THNIILSAYKTGAQYAKALSYFELMKGT--NIRPDTTTLNIIIYCLTKLGQYEKAIGIFK 299

Query: 259 MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            + +   +  P+V  +T  I+  S  G  E   +V+  M  +G+ P+ V  + L+     
Sbjct: 300 SMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYAS 359

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G  + A  +    KN G+   ++SY+SL+ +   ++  +KA E++E MK  KLKP + +
Sbjct: 360 HGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVS 419

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVEVGLMLLS 433
            NA+I A      L + +EVL +M+  G+ PN ++   LL A   C RK +++V   +L 
Sbjct: 420 YNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDV---VLQ 476

Query: 434 QAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 464
            A+   +  N + +   IG  M    +EKA ++
Sbjct: 477 AAERRHIKLNTIAYNSAIGSYMNVGEFEKATSM 509



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 165/365 (45%), Gaps = 5/365 (1%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           F +L+         E +  V R ++ +    A   +Y  +I   A+    D    +F EM
Sbjct: 102 FPLLIKEITQKGSIEHSILVFRWMKNQRNYCARTDIYNMMIRLHARHNWTDQARGLFFEM 161

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                +P+  T  ALI+   ++GQ   A      M  K + P R  +N LI ACG SG  
Sbjct: 162 QKWRCKPDAETCNALINAHGRSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNW 221

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A  +  +M    + V PD +T   ++ A     Q  +A   ++++   NI+       
Sbjct: 222 REALKLCKKMTE--NGVGPDLVTHNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTTLN 279

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           I I C ++ G +E A  ++  M +K     PD V  +++I      G++E    +     
Sbjct: 280 IIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMV 339

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I+SY++LMGA ++    ++AL ++  +K+  L+P V +  +L+ +     Q  
Sbjct: 340 AEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPK 399

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           K  EV   MK   L PN ++Y+ ++ A      +   + +L + ++DG+ PN V    ++
Sbjct: 400 KAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLL 459

Query: 452 GMCSR 456
             C R
Sbjct: 460 AACGR 464



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 167/367 (45%), Gaps = 10/367 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + TF  ++ + + +   E    V   +   GLK +   Y TL+   A  G       
Sbjct: 309 HPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALS 368

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF+ + N+G+ P+V +Y +L++   ++ Q  KA   + +M+   +KP+ V +NA+I A G
Sbjct: 369 VFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYG 428

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +G +  A +VL EM  E   + P+ ++I  L+ AC    +      V +   + +IK  
Sbjct: 429 SNGLLAEAVEVLREM--EQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIKLN 486

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y  AI      G++E A S+Y  M K  VIPD V  + LI       K   A E L 
Sbjct: 487 TIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDAVTFTVLISGCCKMTKYCEALEFLS 546

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  +  I +   +YSS  G  + A++      ++  MK     P V T   ++ A    +
Sbjct: 547 EMMDLKIPMTKEAYSS--GKITEAES------MFNKMKMAGCSPDVVTYTMMLHAYNAAE 598

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              K   +L +M+   + P+TI  S L+ A  +  D    L+L    +E  +  +  +F 
Sbjct: 599 HWKKACALLQEMEEYNIQPDTIACSALMRAFNKGGDPSKVLILAEFMREKEIPLSDAIFF 658

Query: 449 CIIGMCS 455
            ++  CS
Sbjct: 659 EMVSACS 665



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 98/446 (21%), Positives = 185/446 (41%), Gaps = 25/446 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + SYN L+      G   E + +   ++  GL   D V +    N     +  
Sbjct: 340 AEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRP-DVVSYTSLLNSYGRSQQP 398

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           K+A   F+++      P + ++N ++    S+     A +VLR +++ G+  +     TL
Sbjct: 399 KKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTL 458

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +  C +  +   +  V        I+ N   Y + I      G+  KA   Y  MR   V
Sbjct: 459 LAACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKV 518

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            PD V F  LI+ C +      A + L+EM     P          + K   ++G++  A
Sbjct: 519 IPDAVTFTVLISGCCKMTKYCEALEFLSEMMDLKIP----------MTKEAYSSGKITEA 568

Query: 254 REVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
                M +K  + G +P+V  YT+ ++  +    W+ AC++  +M +  + PD +  SAL
Sbjct: 569 ES---MFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSAL 625

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           +      G       + +  + + I +    +  ++ ACS  ++W+  +EL + M+S   
Sbjct: 626 MRAFNKGGDPSKVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLMESSFS 685

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
             ++  +N L+  L    ++   M++   +   G   N  TYSILL       +    + 
Sbjct: 686 VVSIGLLNQLLHLLGKSGKIESMMKLFYKIIGSGAEINCNTYSILLKNLLAVGNWRKYIE 745

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSR 456
           +L   +E  V P+  M+  II    +
Sbjct: 746 VLEWMEEARVQPSNGMYFDIISFAQK 771



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 134/297 (45%), Gaps = 15/297 (5%)

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           R  F  LI    Q G+++ +  V   M  + +      I    +++  A     D+AR +
Sbjct: 99  RKNFPLLIKEITQKGSIEHSILVFRWMKNQRNYCARTDI-YNMMIRLHARHNWTDQARGL 157

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  + K+  K   E     IN   ++G W +A ++ +DM +K + P     + LI+  G 
Sbjct: 158 FFEMQKWRCKPDAETCNALINAHGRSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGS 217

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           +G    A ++ ++    G+   +++++ ++ A      + KAL  +E MK   ++P  +T
Sbjct: 218 SGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTT 277

Query: 377 MNALITALCDGDQLPKTMEVLSDM--KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           +N +I  L    Q  K + +   M  K     P+ +T++ ++        +E    + S 
Sbjct: 278 LNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFST 337

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF-----NSG-RPQIENKWTSL 485
              +G+ PN+V +  ++G  +     +  +N+  LS      NSG RP + + +TSL
Sbjct: 338 MVAEGLKPNIVSYNTLMGAYA-----SHGMNKEALSVFNAIKNSGLRPDVVS-YTSL 388



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/119 (23%), Positives = 58/119 (48%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F  ++S C+  +D     ++++L++ +       L   L+    KSGK+++M ++F++++
Sbjct: 657 FFEMVSACSLLRDWRTTIELIKLMESSFSVVSIGLLNQLLHLLGKSGKIESMMKLFYKII 716

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            +G E N +TY  L+      G   K       M    V+P   ++  +I+   +SGA 
Sbjct: 717 GSGAEINCNTYSILLKNLLAVGNWRKYIEVLEWMEEARVQPSNGMYFDIISFAQKSGAT 775



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 128/333 (38%), Gaps = 55/333 (16%)

Query: 39  GRISECIDL---LEDMERKGLLDMDKVYHA---RFFNVCKSQKA--IKEAFRFFKLVPNP 90
           GR S  +++   L+  ER+ +      Y++    + NV + +KA  +  + R  K++P+ 
Sbjct: 463 GRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDA 522

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              TF +L+S C        A + L  + +  +    + Y+        SGK+     +F
Sbjct: 523 V--TFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYS--------SGKITEAESMF 572

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           ++M  AG  P+V TY  ++     A    KA      M   N++PD +  +AL+ A  + 
Sbjct: 573 NKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSALMRAFNKG 632

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHI-------------------------------TIGA 239
           G   +   +LAE   E      D I                               +IG 
Sbjct: 633 GDPSKVL-ILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLMESSFSVVSIGL 691

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMT 296
           L +     G+  +   + K+ +K    G       Y+I +      G+W     V + M 
Sbjct: 692 LNQLLHLLGKSGKIESMMKLFYKIIGSGAEINCNTYSILLKNLLAVGNWRKYIEVLEWME 751

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           +  V P       +I FA  +G   ++  I+QE
Sbjct: 752 EARVQPSNGMYFDIISFAQKSGATYSS--IIQE 782


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 196/447 (43%), Gaps = 18/447 (4%)

Query: 42  SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNM 97
           S+   L++ M+  G+   D   +    + C+     +EA   F+ +     +P   T+N 
Sbjct: 273 SKIAGLVDSMKSSGVAP-DLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNA 331

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L+ V   S+    A +VL+ ++ +G       Y +LI+  A+ G +D   E+  +MV  G
Sbjct: 332 LLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKG 391

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I+P+V TY  L+ G  K G+   A   +  MR    +P+   FNALI   G  G      
Sbjct: 392 IKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMM 451

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            V  E+  ++    PD +T   L+      G       V+K + +       + +   I+
Sbjct: 452 KVFEEI--KICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 509

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
             S+ G ++ A ++Y  M   GV PD    +A++      G  E + ++L E K+     
Sbjct: 510 AYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKP 569

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
             ++Y SL+ A +N K  ++   L E + S  ++P    +  L+      D L +T    
Sbjct: 570 NELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAF 629

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR- 456
            +++  G  P+  T + ++    R+  V     +L+  K+ G  P+L  +  ++ M SR 
Sbjct: 630 LELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRT 689

Query: 457 -RYEK---------ARTLNEHVLSFNS 473
             +EK         A+ +   ++SFN+
Sbjct: 690 EHFEKSEDILREIIAKGMKPDIISFNT 716



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 180/397 (45%), Gaps = 13/397 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIK--EAF 81
           +YN LI    R G + E ++L   M +KG+      Y    + F    K   A+K  E  
Sbjct: 363 TYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEM 422

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R     PN  + TFN L+ +  +  +     +V   ++      D   + TL+    ++G
Sbjct: 423 RVAGCQPN--ICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNG 480

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
               +  VF EM  AG  P   T+  LI   ++ G   +A   Y  M    V PD   +N
Sbjct: 481 MDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYN 540

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           A++ A  + G  +++  VLAEM        P+ +T  +L+ A AN  +V+R   + + I+
Sbjct: 541 AVLAALARGGLWEQSEKVLAEMKD--GRCKPNELTYCSLLHAYANGKEVERMSALAEEIY 598

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              I+    +    +   S++         + ++ ++G  PD   L+A++   G    V 
Sbjct: 599 SGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVS 658

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
              EIL   K+ G +  + +Y+SLM   S  ++++K+ ++   + +  +KP + + N +I
Sbjct: 659 KTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVI 718

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            A C   ++ +   + ++MK  GL P+ ITY+  + +
Sbjct: 719 FAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIAS 755



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 161/365 (44%), Gaps = 3/365 (0%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           S   +++SV      +  A  +L  ++  G+  D   YT+LIT  A +G+      VF +
Sbjct: 186 SVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKK 245

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +   G  P + TY  +++   K G   +K  G    M+S  V PD   +N LI++C +  
Sbjct: 246 LEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGS 305

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             + A +V  EM A      PD +T  AL+     + +   A EV K +       +   
Sbjct: 306 LYEEAAEVFEEMKAA--GFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+  ++ G  + A  +   M KKG+ PD    + L+      GK + A ++ +E +
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMR 423

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G    I ++++L+    N  N+ + ++++E +K  +  P + T N L+          
Sbjct: 424 VAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDS 483

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   V  +MK  G  P   T++ L+ A  R    +  + +  +  + GV P+L  +  ++
Sbjct: 484 EVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVL 543

Query: 452 GMCSR 456
              +R
Sbjct: 544 AALAR 548



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 159/357 (44%), Gaps = 9/357 (2%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVF 150
           +  L++  AS+     A  V + ++E G +     Y  ++    K G    K+  + +  
Sbjct: 223 YTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVD-- 280

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M ++G+ P+++TY  LI  C +     +A   +  M++    PD+V +NAL+   G+S
Sbjct: 281 -SMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKS 339

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
                A +VL EM  E     P  +T  +L+ A A  G +D A E+   + K  IK    
Sbjct: 340 RRPREAMEVLKEM--EASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVF 397

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            YT  ++   +TG  ++A  V+++M   G  P+    +ALI   G+ G      ++ +E 
Sbjct: 398 TYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEI 457

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K       I+++++L+          +   +++ MK     P   T N LI+A       
Sbjct: 458 KICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFF 517

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            + M +   M   G+ P+  TY+ +L A  R    E    +L++ K+    PN + +
Sbjct: 518 DQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTY 574



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 9/263 (3%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA---LMKACANAGQVDRARE 255
           V   +I+  G+ G    A  +L ++       D  HI I A   L+ A A+ G+   A  
Sbjct: 187 VVAVIISVLGKEGRASFAASLLHDLRN-----DGVHIDIYAYTSLITAYASNGRYREAVM 241

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           V+K + +   + T   Y + +N   + G  W     + D M   GV PD    + LI   
Sbjct: 242 VFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSC 301

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
                 E A E+ +E K  G S   ++Y++L+     ++  ++A+E+ + M++    P++
Sbjct: 302 RRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSI 361

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N+LI+A      L + ME+ S M   G+ P+  TY+ LL   E+    +  + +  +
Sbjct: 362 VTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEE 421

Query: 435 AKEDGVIPNLVMFKCIIGMCSRR 457
            +  G  PN+  F  +I M   R
Sbjct: 422 MRVAGCQPNICTFNALIKMHGNR 444



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/347 (19%), Positives = 149/347 (42%), Gaps = 33/347 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L++V   +        V + ++ AG   +   + TLI+  ++ G  D    +
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M++AG+ P++ TY A++   A+ G   ++      M+    KP+ + + +L+ A   
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583

Query: 210 SGAVDR----------------------------AFDVLAE-----MNAEVHPVDPDHIT 236
              V+R                              D+L E     +        PD  T
Sbjct: 584 GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           + A++        V +  E+   I       +   Y   +   S+T  +E +  +  ++ 
Sbjct: 644 LNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREII 703

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            KG+ PD +  + +I      G+++ A  I  E K+ G++  +I+Y++ + + ++   + 
Sbjct: 704 AKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFI 763

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +A+++ ++M     KP  +T N+LI   C  ++  +    +S++++L
Sbjct: 764 EAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNL 810



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 103/250 (41%), Gaps = 6/250 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+  L+   A+ K+ E    +   +    ++    L  TL+   +KS  +      
Sbjct: 569 PNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERA 628

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F E+   G  P++ T  A++    +   V+K       ++     P    +N+L+    +
Sbjct: 629 FLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSR 688

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +   +++ D+L E+ A+   + PD I+   ++ A    G++  A  ++  +  + +   P
Sbjct: 689 TEHFEKSEDILREIIAK--GMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGL--AP 744

Query: 270 EVYTIAINCCSQTGDWEF--ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +V T      S   D  F  A  V   M K G  P++   ++LID+     + + A   +
Sbjct: 745 DVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFCKLNRRDEASSFI 804

Query: 328 QEAKNQGISV 337
              +N   SV
Sbjct: 805 SNLRNLDPSV 814


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 183/372 (49%), Gaps = 23/372 (6%)

Query: 93  STFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +TFN ML  +C++ K +  A ++LR +     + +   Y T+I      G+V A  ++  
Sbjct: 155 TTFNIMLRHLCSAGKPAR-ALELLRQMP----RPNAVTYNTVIAGFCSRGRVQAALDIMR 209

Query: 152 EMV-NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQ 209
           EM    GI PN +TYG +I G  K G+V +A   +  M +K  VKP+ V++NALI     
Sbjct: 210 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 269

Query: 210 SGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            G +D A    D + E    +        T   L+ A    G   R  E Y+++ +   K
Sbjct: 270 QGKLDTALLYRDRMVERGVAMTVA-----TYNLLVHALFMDG---RGTEAYELVEEMGGK 321

Query: 267 GTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G       Y I IN   + G+ + A  ++++M+++GV    V  ++LI      G+V+  
Sbjct: 322 GLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQET 381

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            ++  EA  +GI   ++ Y++L+ + S + N  +A E+   M+  ++ P   T N L+  
Sbjct: 382 DKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRG 441

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++ +  +++ +M   G+ P+ +TY+ L+     K DV+  L + ++    G  P 
Sbjct: 442 LCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPT 501

Query: 444 LVMFKCII-GMC 454
           L+ +  +I G+C
Sbjct: 502 LLTYNALIQGLC 513



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 196/420 (46%), Gaps = 11/420 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           L  DM R  L      ++    ++C + K  + A    + +P P   T+N +++   S  
Sbjct: 141 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPAR-ALELLRQMPRPNAVTYNTVIAGFCSRG 199

Query: 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHT 164
             + A  ++R ++E  G+  +   Y T+I+   K G+VD   +VF EM+  G ++P    
Sbjct: 200 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 259

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y ALI G    G++  A      M  + V      +N L+ A    G    A++++ EM 
Sbjct: 260 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMG 319

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
            +   +D    T   L+      G V +A E+++ + +  ++ T   YT  I   S+ G 
Sbjct: 320 GKGLALD--VFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQ 377

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            +    ++D+  ++G+ PD V  +ALI+    +G ++ AFEI+ E + + I+   ++Y++
Sbjct: 378 VQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNT 437

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           LM          +A +L + M    ++P + T N LI+       +   + + ++M + G
Sbjct: 438 LMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKG 497

Query: 405 LCPNTITYSILLVA-CE--RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 461
             P  +TY+ L+   C+  + DD E    ++ +  E+G+ P+   +  +I   +   E+A
Sbjct: 498 FNPTLLTYNALIQGLCKNGQGDDAE---NMVKEMVENGITPDDSTYISLIEGLTTEDERA 554



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           +  +    K+  + +   S   L+ A  +A     A  L+  M  ++L    +T N ++ 
Sbjct: 107 SLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLR 162

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVI 441
            LC   +  + +E+L  M      PN +TY+ ++     +  V+  L ++ + +E  G+ 
Sbjct: 163 HLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIA 218

Query: 442 PNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQ 477
           PN   +  +I G C   R ++A  + + +L+    +P+
Sbjct: 219 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE 256


>gi|298711148|emb|CBJ32373.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 167/366 (45%), Gaps = 5/366 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ---EAGLKADCKLYTTLITTCAKSGKVDAM 146
           P + T+  LMS   S +   GA  VL L +   ++GLK +   Y + I      G  +  
Sbjct: 373 PDIITYGSLMSAL-SPRGLAGADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWERA 431

Query: 147 FEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            ++   M    G+EPN   Y A++   A  GQ  +A      MR   +  D VV+ A I 
Sbjct: 432 EQMLVGMQKEHGVEPNRFCYSAVVKALANGGQWKRALETLDEMRECGLSADPVVYTAAIG 491

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           AC + G  ++A D L+++ +E  P+        A + A   A Q++  +++   +    +
Sbjct: 492 ACEKFGQWEKALDTLSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGL 551

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     Y   +      G WE + S+  +M + GV P+ V  + LI       ++E A +
Sbjct: 552 KPDEYTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVYNTLIASVLKGEQMEKADD 611

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           IL   +  G+   + +Y+++M  C    +W++A  L   M+S  +KP   T+ A++    
Sbjct: 612 ILNRMREGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEMESFGVKPNSRTLTAVLKVYG 671

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           D  ++ + + +     + G+  + I ++ L+    +KDD E  L L S+ +  GV P+ +
Sbjct: 672 DAGEVERALALFEQYDASGMVMDVICFNTLMGPVLKKDDPETVLELFSRMESRGVEPDSL 731

Query: 446 MFKCII 451
               ++
Sbjct: 732 TMSLVL 737



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 191/442 (43%), Gaps = 80/442 (18%)

Query: 89  NPTLSTFNMLMSVCASSK--------------------DSEGAFQVLRLVQ----EAGLK 124
           +PT+ T+N+L++  A S+                    DS     V++ +Q     A ++
Sbjct: 157 HPTVFTYNLLIAALARSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMR 216

Query: 125 A---DCKL----------YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171
           A   D KL          Y+ +++  A  G  +    +  EM    +  + +TY A ++ 
Sbjct: 217 AVLEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNA 276

Query: 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-- 229
           C +AG+  +A      MR   V P+ + +N +I AC   G  ++A++   E ++ + P  
Sbjct: 277 CKEAGKWMQAAAFLPRMREDGVPPNTIAYNTVIGACAFFGRPNKAWNNNRETSSFLRPTS 336

Query: 230 ----------------------------------VDPDHITIGALMKACANAG--QVDRA 253
                                             V+PD IT G+LM A +  G    D  
Sbjct: 337 TRENKGRGLSPAQAEASDAGDFALGLMEEMKREGVEPDIITYGSLMSALSPRGLAGADIV 396

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALID 312
            E+++ + K  +K     Y  AI      GDWE A  +   M K+ GV P+    SA++ 
Sbjct: 397 LELFETLAKSGLKPNSITYVSAIRAYGDKGDWERAEQMLVGMQKEHGVEPNRFCYSAVVK 456

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
              + G+ + A E L E +  G+S   + Y++ +GAC     W+KAL+    + S K  P
Sbjct: 457 ALANGGQWKRALETLDEMRECGLSADPVVYTAAIGACEKFGQWEKALDTLSKLVSEK-PP 515

Query: 373 TVSTM---NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             S M   NA I+AL    Q+    ++++ MK+ GL P+  TY+ ++ A       E   
Sbjct: 516 MRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGLKPDEYTYAAMMRASGIDGSWEESW 575

Query: 430 MLLSQAKEDGVIPNLVMFKCII 451
            +L + ++ GV PN V++  +I
Sbjct: 576 SMLVEMEQAGVRPNRVVYNTLI 597



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 40/348 (11%)

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK--AFGAYGIMRSKNVKPDRVVFN 201
           D    +  EM   G+EP++ TYG+L+   +  G          +  +    +KP+ + + 
Sbjct: 357 DFALGLMEEMKREGVEPDIITYGSLMSALSPRGLAGADIVLELFETLAKSGLKPNSITYV 416

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           + I A G  G  +RA  +L  M  E H V+P+     A++KA AN GQ  RA E    + 
Sbjct: 417 SAIRAYGDKGDWERAEQMLVGMQKE-HGVEPNRFCYSAVVKALANGGQWKRALETLDEMR 475

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD--------------------------- 294
           +  +   P VYT AI  C + G WE A                                 
Sbjct: 476 ECGLSADPVVYTAAIGACEKFGQWEKALDTLSKLVSEKPPMRSLMWGYNAAISALGKAKQ 535

Query: 295 ----------MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
                     M   G+ PDE   +A++  +G  G  E ++ +L E +  G+    + Y++
Sbjct: 536 MEGIKDLVATMKASGLKPDEYTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVYNT 595

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L+ +    +  +KA ++   M+   + P V+T   +++         +   +LS+M+S G
Sbjct: 596 LIASVLKGEQMEKADDILNRMREGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEMESFG 655

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           + PN+ T + +L       +VE  L L  Q    G++ +++ F  ++G
Sbjct: 656 VKPNSRTLTAVLKVYGDAGEVERALALFEQYDASGMVMDVICFNTLMG 703



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 174/421 (41%), Gaps = 78/421 (18%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y+ +++  A  G  +    +  EM    +  + +TY A ++ C +AG+  +A      M
Sbjct: 234 VYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNACKEAGKWMQAAAFLPRM 293

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP------------------- 229
           R   V P+ + +N +I AC   G  ++A++   E ++ + P                   
Sbjct: 294 REDGVPPNTIAYNTVIGACAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPAQAEAS 353

Query: 230 -----------------VDPDHITIGALMKACANAG--QVDRAREVYKMIHKYNIKGTPE 270
                            V+PD IT G+LM A +  G    D   E+++ + K  +K    
Sbjct: 354 DAGDFALGLMEEMKREGVEPDIITYGSLMSALSPRGLAGADIVLELFETLAKSGLKPNSI 413

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            Y  AI      GDWE A  +   M K+ GV P+    SA++    + G+ + A E L E
Sbjct: 414 TYVSAIRAYGDKGDWERAEQMLVGMQKEHGVEPNRFCYSAVVKALANGGQWKRALETLDE 473

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALE----------------------------- 360
            +  G+S   + Y++ +GAC     W+KAL+                             
Sbjct: 474 MRECGLSADPVVYTAAIGACEKFGQWEKALDTLSKLVSEKPPMRSLMWGYNAAISALGKA 533

Query: 361 --------LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
                   L   MK+  LKP   T  A++ A        ++  +L +M+  G+ PN + Y
Sbjct: 534 KQMEGIKDLVATMKASGLKPDEYTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVY 593

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLS 470
           + L+ +  + + +E    +L++ +E GV P++  +  I+  C R   + +A  L   + S
Sbjct: 594 NTLIASVLKGEQMEKADDILNRMREGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEMES 653

Query: 471 F 471
           F
Sbjct: 654 F 654



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/369 (21%), Positives = 164/369 (44%), Gaps = 43/369 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    ++ ++   A+    + A + L  ++E GL AD  +YT  I  C K G+ +   + 
Sbjct: 446 PNRFCYSAVVKALANGGQWKRALETLDEMRECGLSADPVVYTAAIGACEKFGQWEKALDT 505

Query: 150 FHEMVNAGIEPNVHT----YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++V+   +P + +    Y A I    KA Q+         M++  +KPD   + A++ 
Sbjct: 506 LSKLVSE--KPPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGLKPDEYTYAAMMR 563

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           A G  G+ + ++ +L EM  E   V P+ +    L+ +     Q+++A ++   + +  +
Sbjct: 564 ASGIDGSWEESWSMLVEM--EQAGVRPNRVVYNTLIASVLKGEQMEKADDILNRMREGGV 621

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 YT  ++ C +  DW  A ++  +M   GV P+   L+A++   G AG+VE A  
Sbjct: 622 PPDVTTYTTIMSGCKRESDWRRAEALLSEMESFGVKPNSRTLTAVLKVYGDAGEVERALA 681

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + ++    G+ + +I +++LMG      + +  LEL+  M+S                  
Sbjct: 682 LFEQYDASGMVMDVICFNTLMGPVLKKDDPETVLELFSRMES------------------ 723

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
                             G+ P+++T S++L A E+    E   +L+ + +E+G +  + 
Sbjct: 724 -----------------RGVEPDSLTMSLVLRAAEQAGAAEWAWLLMEKMREEGGVIAMQ 766

Query: 446 MFKCIIGMC 454
           ++   I  C
Sbjct: 767 VYADGIRAC 775



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 164/389 (42%), Gaps = 55/389 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+  +M         E ++ +L  +++AG++ +  +Y TLI +  K  +++   ++
Sbjct: 553 PDEYTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVYNTLIASVLKGEQMEKADDI 612

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M   G+ P+V TY  ++ GC +     +A      M S  VKP+     A++   G 
Sbjct: 613 LNRMREGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEMESFGVKPNSRTLTAVLKVYGD 672

Query: 210 SGAVDRAFDVLAEMNA---------------------------------EVHPVDPDHIT 236
           +G V+RA  +  + +A                                 E   V+PD +T
Sbjct: 673 AGEVERALALFEQYDASGMVMDVICFNTLMGPVLKKDDPETVLELFSRMESRGVEPDSLT 732

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAIN-CCSQT----GDWEFA 288
           +  +++A   AG  + A   + ++ K   +G     +VY   I  CC +T     D +  
Sbjct: 733 MSLVLRAAEQAGAAEWA---WLLMEKMREEGGVIAMQVYADGIRACCVKTRTIADDDDDD 789

Query: 289 CSVYDDMTKKGVIPDEVFLS-----ALIDFAGHAGKVEAAFEILQEAKN--QGISVGIIS 341
               D+   +GV  +E  +      A++D A  +  +  A  I  EA+   +G ++  + 
Sbjct: 790 DDGDDEDNGEGVESEEGLVESSLEEAILDNAADSTPLRRAMSIFIEARQVYEGENIARL- 848

Query: 342 YSSLMGACSN---AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           Y+ ++ AC+    A+    A  L + M+  K  P  ++     +AL       + +EVL 
Sbjct: 849 YAGILLACARDERAEGADAARNLLDEMRRSKFPPDKASFGPAASALASAGDWGEAIEVLK 908

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEV 427
           +  ++G  PN I Y  +  A  ++  ++V
Sbjct: 909 EGAAMGALPNNIAYEDIRAAAHQEGQLKV 937



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 161/431 (37%), Gaps = 79/431 (18%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L T+   ++  A       A   L  ++ AG+ AD      + T CA+   +D    + 
Sbjct: 34  NLRTYRGCLAFLAKGGRGREALMYLEEMESAGVAADNACLGHVATACARGQMLDTALAMV 93

Query: 151 HEMVNAGIEPNVHTYG----ALIDGCAKAG-----------------QVAKAFGAYGIMR 189
             MV+ G      TY     A+++G A                    +   A G  G M+
Sbjct: 94  RGMVSKG-HSVARTYNNIMLAIVNGQAFTSRTSSSRSSFRRTALSNMECEAAVGLLGEMQ 152

Query: 190 SKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           +    P    +N LI A  +S        ++L +M  +   + PD  T   ++K      
Sbjct: 153 ACGAHPTVFTYNLLIAALARSRRPHSEVLNLLDQMRCD--GIKPDSYTYVGVVKGIQGPK 210

Query: 249 QVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           +    R V +   K  ++G     VY+  ++  +  G WE A ++ D+M    V  DE  
Sbjct: 211 KNAMMRAVLE-DAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYT 269

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS----NAKNWQK----- 357
             A ++    AGK   A   L   +  G+    I+Y++++GAC+      K W       
Sbjct: 270 YCAAMNACKEAGKWMQAAAFLPRMREDGVPPNTIAYNTVIGACAFFGRPNKAWNNNRETS 329

Query: 358 -----------------------------ALELYEHMKSIKLKPTVSTMNALITALCDGD 388
                                        AL L E MK   ++P + T  +L++AL    
Sbjct: 330 SFLRPTSTRENKGRGLSPAQAEASDAGDFALGLMEEMKREGVEPDIITYGSLMSALS--- 386

Query: 389 QLPK-------TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG-LMLLSQAKEDGV 440
             P+        +E+   +   GL PN+ITY   + A   K D E    ML+   KE GV
Sbjct: 387 --PRGLAGADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWERAEQMLVGMQKEHGV 444

Query: 441 IPNLVMFKCII 451
            PN   +  ++
Sbjct: 445 EPNRFCYSAVV 455



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++Y  ++R     G   E   +L +ME+ G+     VY+    +V K ++  K      +
Sbjct: 556 YTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVYNTLIASVLKGEQMEKADDILNR 615

Query: 86  L----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +    VP P ++T+  +MS C    D   A  +L  ++  G+K + +  T ++     +G
Sbjct: 616 MREGGVP-PDVTTYTTIMSGCKRESDWRRAEALLSEMESFGVKPNSRTLTAVLKVYGDAG 674

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +V+    +F +   +G+  +V  +  L+    K          +  M S+ V+PD +  +
Sbjct: 675 EVERALALFEQYDASGMVMDVICFNTLMGPVLKKDDPETVLELFSRMESRGVEPDSLTMS 734

Query: 202 ALITACGQSGAVDRAFDVLAEMNAE 226
            ++ A  Q+GA + A+ ++ +M  E
Sbjct: 735 LVLRAAEQAGAAEWAWLLMEKMREE 759



 Score = 42.0 bits (97), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 72/366 (19%), Positives = 138/366 (37%), Gaps = 25/366 (6%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA------F 81
           YN LI    +  ++ +  D+L  M R+G +  D   +    + CK +   + A       
Sbjct: 593 YNTLIASVLKGEQMEKADDILNRM-REGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEM 651

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             F + PN    T   ++ V   + + E A  +      +G+  D   + TL+    K  
Sbjct: 652 ESFGVKPNS--RTLTAVLKVYGDAGEVERALALFEQYDASGMVMDVICFNTLMGPVLKKD 709

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
             + + E+F  M + G+EP+  T   ++    +AG    A+     MR +       V+ 
Sbjct: 710 DPETVLELFSRMESRGVEPDSLTMSLVLRAAEQAGAAEWAWLLMEKMREEGGVIAMQVYA 769

Query: 202 ALITAC---GQSGAVDRAFDVLAEMNAEVHPVDPDHITI-----GALMKACANAGQVDRA 253
             I AC    ++ A D   D   +       V+ +   +      A++   A++  + RA
Sbjct: 770 DGIRACCVKTRTIADDDDDDDDGDDEDNGEGVESEEGLVESSLEEAILDNAADSTPLRRA 829

Query: 254 REVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWE---FACSVYDDMTKKGVIPDEVFLSA 309
             ++ +    Y  +    +Y   +  C++    E    A ++ D+M +    PD+     
Sbjct: 830 MSIFIEARQVYEGENIARLYAGILLACARDERAEGADAARNLLDEMRRSKFPPDKASFGP 889

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
                  AG    A E+L+E    G     I+Y  +  A       + A E    +   +
Sbjct: 890 AASALASAGDWGEAIEVLKEGAAMGALPNNIAYEDIRAAAHQEGQLKVANERLHEIIYPE 949

Query: 370 LKPTVS 375
           + PT +
Sbjct: 950 VDPTAA 955



 Score = 42.0 bits (97), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 79/382 (20%), Positives = 141/382 (36%), Gaps = 71/382 (18%)

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           + KVD +  V  E+ + G E N+ TY   +   AK G+  +A      M S  V  D   
Sbjct: 14  AAKVD-VTRVMQELRDEGAEFNLRTYRGCLAFLAKGGRGREALMYLEEMESAGVAADNAC 72

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA------ 253
              + TAC +   +D A  ++  M ++ H V     T   +M A  N GQ   +      
Sbjct: 73  LGHVATACARGQMLDTALAMVRGMVSKGHSV---ARTYNNIMLAIVN-GQAFTSRTSSSR 128

Query: 254 -------------REVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDM 295
                             ++ +    G  P V+T    IA    S+    E   ++ D M
Sbjct: 129 SSFRRTALSNMECEAAVGLLGEMQACGAHPTVFTYNLLIAALARSRRPHSEV-LNLLDQM 187

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK--NQGISVGIISYSSLMGACSNAK 353
              G+ PD      ++       K      +L++AK   +G+ +  + YS+++   +   
Sbjct: 188 RCDGIKPDSYTYVGVVKGIQGPKKNAMMRAVLEDAKLELEGLDLSAV-YSAVVSGYAVDG 246

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           +W+ A  L + M +  +     T  A + A  +  +  +    L  M+  G+ PNTI Y+
Sbjct: 247 SWEDASALVDEMFANDVPRDEYTYCAAMNACKEAGKWMQAAAFLPRMREDGVPPNTIAYN 306

Query: 414 ILLVAC--------------------------------------ERKDDVEVGLMLLSQA 435
            ++ AC                                      E  D  +  L L+ + 
Sbjct: 307 TVIGACAFFGRPNKAWNNNRETSSFLRPTSTRENKGRGLSPAQAEASDAGDFALGLMEEM 366

Query: 436 KEDGVIPNLVMFKCIIGMCSRR 457
           K +GV P+++ +  ++   S R
Sbjct: 367 KREGVEPDIITYGSLMSALSPR 388


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 186/419 (44%), Gaps = 8/419 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + G++        +M+  GL+  D  Y +    +CK+ + + EA   F+ +      P  
Sbjct: 282 KAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADR-LNEAVELFEHMDQNKQVPCA 340

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
             +N ++     +   E A+ +L   +  G       Y  +++   + G+VD   + F E
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE 400

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M    I PN+ TY  +ID   KAG++  A      M+   + P+ +  N ++    ++  
Sbjct: 401 MKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQR 459

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A  +   ++ +     PD +T  +L++     G+VD A ++Y+ +   N      VY
Sbjct: 460 LDDACSIFEGLDHKT--CRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVY 517

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  I    + G  E    +Y++M + G  PD + L+  +D    AG++E    + QE KN
Sbjct: 518 TSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKN 577

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G      SY+ L+     A    +A EL+  MK           N +I   C   ++ K
Sbjct: 578 LGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNK 637

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             ++L +MK+ G  P  +TY  ++    + D ++   ML  +AK  G+  N+V++  +I
Sbjct: 638 AYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLI 696



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 203/441 (46%), Gaps = 12/441 (2%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN +I      G+  +   LLE   RKG +     Y+    +    +  + EA + F+
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNC-ILSCLGRKGQVDEALKKFE 399

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +     P LST+N+++ +   +   E A  V   +++AGL  +      ++    K+ +
Sbjct: 400 EMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQR 459

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D    +F  + +    P+  TY +LI+G  + G+V +A+  Y  M   N  P+ VV+ +
Sbjct: 460 LDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTS 519

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    + G  +    +  EM        PD + +   M     AG++++ R +++ I  
Sbjct: 520 LIRNFFKCGRKEDGHKIYNEMLR--LGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKN 577

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                    YTI I+   + G    A  ++  M ++G + D    + +ID    +GKV  
Sbjct: 578 LGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNK 637

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A+++L+E K +G    +++Y S++   +      +A  L+E  KS  ++  V   ++LI 
Sbjct: 638 AYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLID 697

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
                 ++ +   ++ ++   GL PN  T++ LL A  + +++   L+     K+    P
Sbjct: 698 GFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTP 757

Query: 443 NLVMFKCII-GMCS-RRYEKA 461
           N + +  +I G+C  R++ KA
Sbjct: 758 NYITYSILIHGLCKIRKFNKA 778



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 145/616 (23%), Positives = 252/616 (40%), Gaps = 70/616 (11%)

Query: 18  HANYAHDVSEQLH---SYNRLIR---QGRISECID-LLEDMERKGLLDMDKVYHARFFNV 70
           +  +A  ++++ H   +YN L+    + R   C++ +LE+M   G    +        + 
Sbjct: 116 YFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSF 175

Query: 71  CKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
            KS+K ++EAF F     KL   P  S +  L+   ++S+DS+    + + +QE G   +
Sbjct: 176 IKSRK-LREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
             L+TTLI   A+ G+VDA   +  EM +  +EP+V  Y   ID   KAG+V  A+  + 
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFH 294

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M++  +  D V + ++I    ++  ++ A ++   M+       P       ++     
Sbjct: 295 EMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV--PCAYAYNTMIMGYGM 352

Query: 247 AGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
           AG+ + A   Y ++ +   KG  P V  Y   ++C  + G  + A   +++M KK  IP+
Sbjct: 353 AGKFEDA---YSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPN 408

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
               + +ID    AGK+E A  +    K+ G+   +I+ + ++     A+    A  ++E
Sbjct: 409 LSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFE 468

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACE 420
            +     +P   T  +LI  L    ++ +  ++   M      PN + Y+ L+     C 
Sbjct: 469 GLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCG 528

Query: 421 RKDD--------------------------------VEVGLMLLSQAKEDGVIPNLVMFK 448
           RK+D                                +E G  L  + K  G IP+   + 
Sbjct: 529 RKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYT 588

Query: 449 CII------GMCSRRYEKARTLNEH--VLSFNSGRPQIENKWTS----LALMVYREAIVA 496
            +I      G     YE   T+ E   VL   +    I+    S     A  +  E    
Sbjct: 589 ILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK 648

Query: 497 GTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRA 554
           G  PTV     V+  L      D    L E        L      SLIDGFG+      A
Sbjct: 649 GHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEA 708

Query: 555 FSLLEEAASFGIVPCV 570
           + ++EE    G+ P V
Sbjct: 709 YLIMEELMQKGLTPNV 724



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 196/448 (43%), Gaps = 61/448 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL------ 86
           +RL +  R+ +   + E ++ K     D V +            + EA++ ++       
Sbjct: 452 DRLCKAQRLDDACSIFEGLDHKTCRP-DAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQ 510

Query: 87  VPNPTLSTFNMLMSV--CASSKDSEGAF-QVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +PN  + T +++ +   C   +D    + ++LRL    G   D  L  T +    K+G++
Sbjct: 511 IPNAVVYT-SLIRNFFKCGRKEDGHKIYNEMLRL----GCSPDLLLLNTYMDCVFKAGEI 565

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +    +F E+ N G  P+  +Y  LI G  KAG   +A+  +  M+ +    D   +N +
Sbjct: 566 EKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    +SG V++A+ +L EM  + H  +P  +T G+++   A   ++DR  E Y +    
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGH--EPTVVTYGSVIDGLA---KIDRLDEAYML---- 676

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                                       +++   KG+  + V  S+LID  G  G+++ A
Sbjct: 677 ----------------------------FEEAKSKGIELNVVIYSSLIDGFGKVGRIDEA 708

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           + I++E   +G++  + +++ L+ A   A+   +AL  ++ MK +K  P   T + LI  
Sbjct: 709 YLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHG 768

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   +  K      +M+  G  PN  TY+ ++    +  ++     L  + KE G + +
Sbjct: 769 LCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVAD 828

Query: 444 LVMFKCIIGMCS---------RRYEKAR 462
             ++  II   S         R +E+AR
Sbjct: 829 SAIYNAIIEGLSNANRASDAYRLFEEAR 856



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 132/281 (46%), Gaps = 33/281 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   ++ +L+     +  +  A+++   ++E G   D + Y T+I    KSGKV+  +++
Sbjct: 582 PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQL 641

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G EP V TYG++IDG AK  ++ +A+  +   +SK ++ + V++++LI   G+
Sbjct: 642 LEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGK 701

Query: 210 SGAVDRAFDVLAE-MNAEVHP--------------------------------VDPDHIT 236
            G +D A+ ++ E M   + P                                  P++IT
Sbjct: 702 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYIT 761

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              L+       + ++A   ++ + K   K     YT  I+  ++ G+   A ++++   
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFK 821

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
           +KG + D    +A+I+   +A +   A+ + +EA+ +G S+
Sbjct: 822 EKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSI 862


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 196/447 (43%), Gaps = 18/447 (4%)

Query: 42  SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNM 97
           S+   L++ M+  G+   D   +    + C+     +EA   F+ +     +P   T+N 
Sbjct: 273 SKIAGLVDSMKSSGVAP-DLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNA 331

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L+ V   S+    A +VL+ ++ +G       Y +LI+  A+ G +D   E+  +MV  G
Sbjct: 332 LLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKG 391

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I+P+V TY  L+ G  K G+   A   +  MR    +P+   FNALI   G  G      
Sbjct: 392 IKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMM 451

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            V  E+  ++    PD +T   L+      G       V+K + +       + +   I+
Sbjct: 452 KVFEEI--KICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLIS 509

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
             S+ G ++ A ++Y  M   GV PD    +A++      G  E + ++L E K+     
Sbjct: 510 AYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKP 569

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
             ++Y SL+ A +N K  ++   L E + S  ++P    +  L+      D L +T    
Sbjct: 570 NELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAF 629

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR- 456
            +++  G  P+  T + ++    R+  V     +L+  K+ G  P+L  +  ++ M SR 
Sbjct: 630 LELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRT 689

Query: 457 -RYEK---------ARTLNEHVLSFNS 473
             +EK         A+ +   ++SFN+
Sbjct: 690 EHFEKSEDILREIIAKGMKPDIISFNT 716



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 194/435 (44%), Gaps = 11/435 (2%)

Query: 25  VSEQLHSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  L++YN LI   R+G +  E  ++ E+M+  G    DKV +    +V    +  +EA
Sbjct: 287 VAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGF-SPDKVTYNALLDVYGKSRRPREA 345

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
               K +      P++ T+N L+S  A     + A ++   + + G+K D   YTTL++ 
Sbjct: 346 MEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG 405

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K+GK D   +VF EM  AG +PN+ T+ ALI      G   +    +  ++     PD
Sbjct: 406 FEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPD 465

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +N L+   GQ+G       V  EM        P+  T   L+ A +  G  D+A  +
Sbjct: 466 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRA--GFVPERDTFNTLISAYSRCGFFDQAMAI 523

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           Y+ +    +      Y   +   ++ G WE +  V  +M      P+E+   +L+    +
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
             +VE    + +E  +  I    +   +L+   S +    +    +  ++     P ++T
Sbjct: 584 GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
           +NA+++       + KT E+L+ +K  G  P+  TY+ L+    R +  E    +L +  
Sbjct: 644 LNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREII 703

Query: 437 EDGVIPNLVMFKCII 451
             G+ P+++ F  +I
Sbjct: 704 AKGMKPDIISFNTVI 718



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 180/397 (45%), Gaps = 13/397 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIK--EAF 81
           +YN LI    R G + E ++L   M +KG+      Y    + F    K   A+K  E  
Sbjct: 363 TYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEM 422

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R     PN  + TFN L+ +  +  +     +V   ++      D   + TL+    ++G
Sbjct: 423 RVAGCQPN--ICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNG 480

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
               +  VF EM  AG  P   T+  LI   ++ G   +A   Y  M    V PD   +N
Sbjct: 481 MDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYN 540

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           A++ A  + G  +++  VLAEM        P+ +T  +L+ A AN  +V+R   + + I+
Sbjct: 541 AVLAALARGGLWEQSEKVLAEMKD--GRCKPNELTYCSLLHAYANGKEVERMSALAEEIY 598

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              I+    +    +   S++         + ++ ++G  PD   L+A++   G    V 
Sbjct: 599 SGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVS 658

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
              EIL   K+ G +  + +Y+SLM   S  ++++K+ ++   + +  +KP + + N +I
Sbjct: 659 KTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVI 718

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            A C   ++ +   + ++MK  GL P+ ITY+  + +
Sbjct: 719 FAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIAS 755



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 161/365 (44%), Gaps = 3/365 (0%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           S   +++SV      +  A  +L  ++  G+  D   YT+LIT  A +G+      VF +
Sbjct: 186 SVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKK 245

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +   G  P + TY  +++   K G   +K  G    M+S  V PD   +N LI++C +  
Sbjct: 246 LEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGS 305

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             + A +V  EM A      PD +T  AL+     + +   A EV K +       +   
Sbjct: 306 LYEEAAEVFEEMKAA--GFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+  ++ G  + A  +   M KKG+ PD    + L+      GK + A ++ +E +
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMR 423

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G    I ++++L+    N  N+ + ++++E +K  +  P + T N L+          
Sbjct: 424 VAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDS 483

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   V  +MK  G  P   T++ L+ A  R    +  + +  +  + GV P+L  +  ++
Sbjct: 484 EVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVL 543

Query: 452 GMCSR 456
              +R
Sbjct: 544 AALAR 548



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 159/357 (44%), Gaps = 9/357 (2%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVF 150
           +  L++  AS+     A  V + ++E G +     Y  ++    K G    K+  + +  
Sbjct: 223 YTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVD-- 280

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M ++G+ P+++TY  LI  C +     +A   +  M++    PD+V +NAL+   G+S
Sbjct: 281 -SMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKS 339

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
                A +VL EM  E     P  +T  +L+ A A  G +D A E+   + K  IK    
Sbjct: 340 RRPREAMEVLKEM--EASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVF 397

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            YT  ++   +TG  ++A  V+++M   G  P+    +ALI   G+ G      ++ +E 
Sbjct: 398 TYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEI 457

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K       I+++++L+          +   +++ MK     P   T N LI+A       
Sbjct: 458 KICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFF 517

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            + M +   M   G+ P+  TY+ +L A  R    E    +L++ K+    PN + +
Sbjct: 518 DQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTY 574



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 9/263 (3%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA---LMKACANAGQVDRARE 255
           V   +I+  G+ G    A  +L ++       D  HI I A   L+ A A+ G+   A  
Sbjct: 187 VVAVIISVLGKEGRASFAASLLHDLRN-----DGVHIDIYAYTSLITAYASNGRYREAVM 241

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           V+K + +   + T   Y + +N   + G  W     + D M   GV PD    + LI   
Sbjct: 242 VFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSC 301

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
                 E A E+ +E K  G S   ++Y++L+     ++  ++A+E+ + M++    P++
Sbjct: 302 RRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSI 361

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N+LI+A      L + ME+ S M   G+ P+  TY+ LL   E+    +  + +  +
Sbjct: 362 VTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEE 421

Query: 435 AKEDGVIPNLVMFKCIIGMCSRR 457
            +  G  PN+  F  +I M   R
Sbjct: 422 MRVAGCQPNICTFNALIKMHGNR 444



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 144/317 (45%), Gaps = 8/317 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TFN L+S  +     + A  + R + +AG+  D   Y  ++   A+ G  +   +V
Sbjct: 499 PERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKV 558

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM +   +PN  TY +L+   A   +V +       + S  ++P  V+   L+    +
Sbjct: 559 LAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSK 618

Query: 210 SGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           S  +   +RAF  L E         PD  T+ A++        V +  E+   I      
Sbjct: 619 SDLLTETERAFLELREQG-----FSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFT 673

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            +   Y   +   S+T  +E +  +  ++  KG+ PD +  + +I      G+++ A  I
Sbjct: 674 PSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRI 733

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             E K+ G++  +I+Y++ + + ++   + +A+++ ++M   + KP  +T N+LI   C 
Sbjct: 734 FAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFCK 793

Query: 387 GDQLPKTMEVLSDMKSL 403
            ++  +    +S++++L
Sbjct: 794 LNRRDEANSFISNLRNL 810



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/135 (17%), Positives = 64/135 (47%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P ++T N ++S+    +      ++L  ++++G       Y +L+   +++   +   +
Sbjct: 638 SPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSED 697

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  E++  G++P++ ++  +I    + G++ +A   +  M+   + PD + +N  I +  
Sbjct: 698 ILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYA 757

Query: 209 QSGAVDRAFDVLAEM 223
                  A DV+  M
Sbjct: 758 SDSMFIEAIDVVKYM 772


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 183/420 (43%), Gaps = 43/420 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R GRI E   LL+ M  +G       Y      +C+  + + EA      +PNP    
Sbjct: 285 LCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQ-VDEARALLNKIPNPNTVL 343

Query: 95  FNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +N L+S   AS +  E    +   +  AG + D   +  +I    K G + +  E+ +EM
Sbjct: 344 YNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEM 403

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           V    EPNV TY  LI+G  K G++ +A      M +K +  + V +N LI A  + G +
Sbjct: 404 VAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNI 463

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + A  +  EM+                 K C                        P++YT
Sbjct: 464 EEALQLFGEMSG----------------KGCK-----------------------PDIYT 484

Query: 274 I--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
               IN   +    E A S+Y DM  +GVI + V  + L+        ++ AF+++ E  
Sbjct: 485 FNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEML 544

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G  +  I+Y+ L+ A       +K L L+E M    + PT+ + N LI+ LC   ++ 
Sbjct: 545 FRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVN 604

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             ++ L DM   GL P+ +TY+ L+    +   V+    L ++ + +G+ P+ + +  +I
Sbjct: 605 DALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLI 664



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 167/349 (47%), Gaps = 11/349 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +PT+ TF ++M       + + A  +LR + + G   +  +Y TLI    ++ +V    +
Sbjct: 202 SPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQ 261

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M     EP+V T+  +I G  +AG++ +A      M  +    D + +  L+    
Sbjct: 262 LLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLC 321

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
           + G VD A  +L ++       +P+ +    L+     +G+ + A+++  + +   I G 
Sbjct: 322 RMGQVDEARALLNKIP------NPNTVLYNTLISGYVASGRFEEAKDL--LYNNMVIAGY 373

Query: 268 TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P+ YT  I I+   + G    A  + ++M  K   P+ +  + LI+     G++E A E
Sbjct: 374 EPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAE 433

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           I+     +G+S+  + Y+ L+ A     N ++AL+L+  M     KP + T N+LI  LC
Sbjct: 434 IVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLC 493

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
              ++ + + +  DM   G+  NT+TY+ L+ A   +D ++    L+ +
Sbjct: 494 KNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDE 542



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 121/286 (42%), Gaps = 9/286 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   +QGR+ E  +++  M  KGL      Y+     +CK    I+EA + F  +     
Sbjct: 420 NGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGN-IEEALQLFGEMSGKGC 478

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + TFN L++    +   E A  +   +   G+ A+   Y TL+        +   F+
Sbjct: 479 KPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFK 538

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM+  G   +  TY  LI    K G V K  G +  M  K + P  +  N LI+   
Sbjct: 539 LVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLC 598

Query: 209 QSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
           ++G V+ A   L +M   +H  + PD +T  +L+      G V  A  ++  +    I+ 
Sbjct: 599 RTGKVNDALKFLQDM---IHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRP 655

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
               Y   I+     G +  AC +       G IP+EV  S LI++
Sbjct: 656 DAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINY 701



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 152/379 (40%), Gaps = 44/379 (11%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +PT  ++N+++ +         A  V   +   G+      +  ++       +VD+   
Sbjct: 167 DPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACS 226

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M   G  PN   Y  LI    +  +V++A      M     +PD   FN +I    
Sbjct: 227 LLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLC 286

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G +  A  +L  M   +     D +T G LM      GQVD AR +   I   N    
Sbjct: 287 RAGRIHEAAKLLDRM--LLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTV-- 342

Query: 269 PEVYTIAINCCSQTGDWEFACSV-YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
             +Y   I+    +G +E A  + Y++M   G  PD    + +ID     G V+  + + 
Sbjct: 343 --LYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMID-----GLVKKGYLV- 394

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                                         ALEL   M + + +P V T   LI   C  
Sbjct: 395 -----------------------------SALELLNEMVAKRFEPNVITYTILINGFCKQ 425

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +L +  E+++ M + GL  NT+ Y+ L+ A  +  ++E  L L  +    G  P++  F
Sbjct: 426 GRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTF 485

Query: 448 KCII-GMC-SRRYEKARTL 464
             +I G+C + + E+A +L
Sbjct: 486 NSLINGLCKNHKMEEALSL 504



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 7/228 (3%)

Query: 240 LMKACANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           +MK    AG   +A R +  M   Y+   T + Y + ++          A +V+ DM  +
Sbjct: 140 IMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSR 199

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV P       ++       +V++A  +L++    G     + Y +L+ A        +A
Sbjct: 200 GVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEA 259

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           L+L E M  +  +P V T N +I  LC   ++ +  ++L  M   G   + +TY  L+  
Sbjct: 260 LQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHG 319

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 464
             R   V+    LL++       PN V++  +I   + S R+E+A+ L
Sbjct: 320 LCRMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDL 363



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 70/152 (46%), Gaps = 9/152 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI+     G + + + L E+M  KG+       +     +C++ K + +A +F + 
Sbjct: 554 TYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGK-VNDALKFLQD 612

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P + T+N L++        + A  +   +Q  G++ D   Y TLI+     G 
Sbjct: 613 MIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGM 672

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
            +    + ++ V++G  PN  T+  LI+   K
Sbjct: 673 FNDACLLLYKGVDSGFIPNEVTWSILINYIVK 704


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 174/356 (48%), Gaps = 15/356 (4%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           ++PN  L T  ++   C   K  E A    R + E G+  D K YT L+    K+GKV+ 
Sbjct: 556 VIPNKVLCT-GLINEYCKKGKVIE-ACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVND 613

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             E+FHEM   GI P+V +YG LIDG +K G + KA   +  M    +  + +++N L+ 
Sbjct: 614 AEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLG 673

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              +SG +++A ++L EM+ +  P  P+ +T   ++     +G +    E +++  +  +
Sbjct: 674 GFCRSGEIEKAKELLDEMSGKGFP--PNAVTYCTIIDGYCKSGDL---AEAFQLFDEMKL 728

Query: 266 KG-TPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           KG  P+  VYT  ++ C +  D E A ++++   +KG        +ALI++    GK E 
Sbjct: 729 KGLVPDSFVYTTLVDGCCRLNDVERAITIFE-TNEKGCASSSAPFNALINWVFKFGKTEL 787

Query: 323 AFEILQEAKNQGISV----GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
             +++    +           ++Y+ ++       N + A EL+ HM+   L PTV T  
Sbjct: 788 TTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYT 847

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           +L+       +  +   V  ++ + G+ P+ I YS+++ A  ++      L+LL Q
Sbjct: 848 SLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQ 903



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 179/422 (42%), Gaps = 7/422 (1%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK----LVPNPTLSTFNMLMSVC 102
           L+ +M   G   +D + +  F  V   + A+++A   F         P    +  L+   
Sbjct: 337 LVHEMVSHGF-SIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGF 395

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
              K+    +++L  +++  +      Y T +     SG +D  + +  EM  +G  PNV
Sbjct: 396 FREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNV 455

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
             Y  LI    +  +   A      MR + + PD   +N+LI    ++  +D A   L E
Sbjct: 456 VIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLE 515

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M    +   PD  T GA +     AG+   A +  K + +  +     + T  IN   + 
Sbjct: 516 MVE--NGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKK 573

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G    ACS +  M ++G++ D    + L++     GKV  A EI  E + +GI+  + SY
Sbjct: 574 GKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSY 633

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
            +L+   S   N QKA  +++ M    L   V   N L+   C   ++ K  E+L +M  
Sbjct: 634 GTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSG 693

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
            G  PN +TY  ++    +  D+     L  + K  G++P+  ++  ++  C R  +  R
Sbjct: 694 KGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 753

Query: 463 TL 464
            +
Sbjct: 754 AI 755



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 168/398 (42%), Gaps = 46/398 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   ++G++ E       M  +G+L   K Y      + K+ K + +A   F  +     
Sbjct: 568 NEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGK-VNDAEEIFHEMRGKGI 626

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + ++  L+   +   + + A  +   + +AGL ++  +Y  L+    +SG+++   E
Sbjct: 627 APDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKE 686

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G  PN  TY  +IDG  K+G +A+AF  +  M+ K + PD  V+  L+  C 
Sbjct: 687 LLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCC 746

Query: 209 QSGAVDRAFDVL-----------AEMNAEVHPV-------------------------DP 232
           +   V+RA  +            A  NA ++ V                          P
Sbjct: 747 RLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKP 806

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           + +T   ++      G ++ A+E++  + K N+  T   YT  +N   + G      SV+
Sbjct: 807 NDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVF 866

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE--AKN---QGISVGIISYSSLMG 347
           D++   G+ PD +  S +I+     G    A  +L +  AKN    G  + I +  +L+ 
Sbjct: 867 DEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALLS 926

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
             +     + A ++ E+M  +K  P  ST+  LI   C
Sbjct: 927 GFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESC 964



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 179/423 (42%), Gaps = 49/423 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +  L+           A +VL+ ++E G+  D   Y +LI   +K+ K+D     
Sbjct: 453 PNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSF 512

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EMV  G +P+  TYGA I G  +AG+ A A      M    V P++V+   LI    +
Sbjct: 513 LLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCK 572

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-T 268
            G V  A      M  +   +  D  T   LM      G+V+ A E++   H+   KG  
Sbjct: 573 KGKVIEACSAFRSMVEQ--GILGDAKTYTVLMNGLVKNGKVNDAEEIF---HEMRGKGIA 627

Query: 269 PEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+V++    I+  S+ G+ + A S++D+M + G+  + +  + L+     +G++E A E+
Sbjct: 628 PDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKEL 687

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L E   +G     ++Y +++     + +  +A +L++ MK   L P       L+   C 
Sbjct: 688 LDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCR 747

Query: 387 GDQLPKTM------------------------------EVLSDMKSLGL--------CPN 408
            + + + +                              E+ +DM +  +         PN
Sbjct: 748 LNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPN 807

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLN 465
            +TY+I++    ++ ++E    L    ++  ++P ++ +  ++       RR E     +
Sbjct: 808 DVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFD 867

Query: 466 EHV 468
           E +
Sbjct: 868 EVI 870



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 143/343 (41%), Gaps = 29/343 (8%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG--QVAK---------- 180
           L+    K  ++D  ++V+  MV   +  +V +Y  LI    + G  Q+AK          
Sbjct: 195 LLDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEEL 254

Query: 181 ---------AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
                    A      M  K + P R  +N LI    +   ++ A  +L EMN+    + 
Sbjct: 255 GTATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNS--VGLF 312

Query: 232 PDHITIGALMKACANAGQVDRARE-VYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
            D++    L+         D A   V++M+ H ++I   P +Y   I   S+ G  E A 
Sbjct: 313 ADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSID--PMMYDYFICVMSKEGAMEKAK 370

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY-SSLMGA 348
           +++D M   GV P     ++LI+       V   +E+L E K + I +   +Y +++ G 
Sbjct: 371 ALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGM 430

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
           CS+  +   A  + + M +   +P V     LI       +    + VL +M+  G+ P+
Sbjct: 431 CSSG-DLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPD 489

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           T  Y+ L++   +   ++     L +  E+G  P+   +   I
Sbjct: 490 TFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFI 532



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/377 (20%), Positives = 152/377 (40%), Gaps = 25/377 (6%)

Query: 113 QVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAMFEVFHEMVNAGIE--PNVHTYGAL 168
            ++R ++E   K+D +  L+  LI    + G +D    VF    +  ++  P++     L
Sbjct: 136 SIVRCLREFVGKSDDRVLLFGILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHL 195

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           +D   K  ++   +  Y  M  +NV  D   +  LI A  + G V  A DVL +   E+ 
Sbjct: 196 LDALLKRNRLDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELG 255

Query: 229 P----VD---------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
                VD               P   +   L+       +++ A+ +   ++   +    
Sbjct: 256 TATLNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADN 315

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+I I+   +  + + A  +  +M   G   D +     I      G +E A  +   
Sbjct: 316 VAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDG 375

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G++ G  +Y+SL+      KN +K  EL   +K   +  +  T    +  +C    
Sbjct: 376 MITFGVTPGARAYASLIEGFFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGD 435

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L     ++ +M + G  PN + Y+ L+    +K      + +L + +E G+ P+   +  
Sbjct: 436 LDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNS 495

Query: 450 -IIGMC-SRRYEKARTL 464
            IIG+  +++ ++AR+ 
Sbjct: 496 LIIGLSKAKKMDEARSF 512



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/249 (21%), Positives = 102/249 (40%), Gaps = 18/249 (7%)

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGD 284
           V   D   +  G L+      G +D A  V+      ++   P +      ++   +   
Sbjct: 145 VGKSDDRVLLFGILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNR 204

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            +    VY  M ++ V+ D      LI      G V+ A ++L + + +           
Sbjct: 205 LDLFWDVYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEE----------- 253

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
            +G  +   N  +ALEL + M    L P+  + N LI  LC   +L     +L +M S+G
Sbjct: 254 -LGTAT--LNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVG 310

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKAR 462
           L  + + YSIL+    +  + +    L+ +    G   + +M+   I + S+    EKA+
Sbjct: 311 LFADNVAYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAK 370

Query: 463 TLNEHVLSF 471
            L + +++F
Sbjct: 371 ALFDGMITF 379


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 155/332 (46%), Gaps = 2/332 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+     +   + A  ++  ++ +G   D   Y+ LI   A +G+ ++   V
Sbjct: 324 PRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIV 383

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM  +G+ PN + +  ++      G+  K+F     MR+  V PDR  +N +I   G+
Sbjct: 384 LKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGK 443

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A      M  E   V PD +T   L+     +G  ++A E+++ + +       
Sbjct: 444 CNCLDHALATFDRMRME--GVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCT 501

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN   +   WE   ++   M  +G++ + V  + L+D  G +G+ + A E L+ 
Sbjct: 502 TTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEV 561

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K+ G+      Y++L+ A +     ++A+  +  M++  LKP+V  +N+LI A  +  +
Sbjct: 562 MKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRR 621

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
             +   VL  MK   L P+ +TY+ L+ A  R
Sbjct: 622 DAEAFSVLQYMKENDLKPDVVTYTTLMKALIR 653



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 179/414 (43%), Gaps = 37/414 (8%)

Query: 81  FRFFKLVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +  F L    TL+  T+N L+  CA + D E A  ++  ++  G  +D   Y+ +I +  
Sbjct: 171 YEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLT 230

Query: 139 KSGKVDA--MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
           ++ K D+  + +++ E+ +  IE +      +I G AK+G V +A     +++   + P 
Sbjct: 231 RTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPK 290

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEM------------NA------------------- 225
                A+ITA G +G  + A  +  E+            NA                   
Sbjct: 291 TATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVS 350

Query: 226 --EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
             E     PD  T   L+ A ANAG+ + AR V K +    ++    V++  +      G
Sbjct: 351 EMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRG 410

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
            W+ +  V  +M   GV PD  F + +ID  G    ++ A       + +G+    ++++
Sbjct: 411 KWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWN 470

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +L+     + +  KA EL+E M+     P  +T N +I +  + ++      +L  M+S 
Sbjct: 471 TLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQ 530

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           GL  N +TY+ L+    +    +  +  L   K  G+ P+  M+  +I   ++R
Sbjct: 531 GLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQR 584



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 151/352 (42%), Gaps = 8/352 (2%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
           A S D   A   L +VQ  GL         +IT    +G+ +    +F E+   G+ P  
Sbjct: 267 AKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRT 326

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
             Y AL+ G  K G +  A      M      PD   ++ LI A   +G  + A  VL E
Sbjct: 327 RAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKE 386

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  E   V P+      ++ +  + G+  ++ +V + +    +      Y + I+   + 
Sbjct: 387 M--EASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKC 444

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALID---FAGHAGKVEAAFEILQEAKNQGISVGI 339
              + A + +D M  +GV PD V  + LID    +GH  K E  FE +QE+   G S   
Sbjct: 445 NCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQES---GCSPCT 501

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            +Y+ ++ +    + W+    L   M+S  L   V T   L+       +    +E L  
Sbjct: 502 TTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEV 561

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           MKS+GL P++  Y+ L+ A  ++   E  +      + DG+ P++++   +I
Sbjct: 562 MKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLI 613



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 125/541 (23%), Positives = 216/541 (39%), Gaps = 65/541 (12%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGK 142
           ++ VP P   +  +L S+C+ S     A+ ++  ++   L    +L Y+ LI    +S K
Sbjct: 112 YRAVPAPLWHS--LLKSLCSDSSSIGTAYSLVTWLERHNLCFSYELLYSILIHALGRSEK 169

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR------------- 189
              ++E F       + P   TY ALI  CA+   + KA      MR             
Sbjct: 170 ---LYEAFLLSQRQTLTP--LTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSF 224

Query: 190 ------------------------SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
                                   S  ++ D  + N +I    +SG V+RA   LA +  
Sbjct: 225 IIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQG 284

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
             + + P   T+ A++ A  NAG+ + A  +++ + +  +      Y   +    +TG  
Sbjct: 285 --NGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSL 342

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A S+  +M + G  PDE   S LID   +AG+ E+A  +L+E +  G+      +S +
Sbjct: 343 KDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRI 402

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           + +  +   WQK+ ++   M++  + P     N +I      + L   +     M+  G+
Sbjct: 403 LASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGV 462

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKART 463
            P+ +T++ L+    +         L    +E G  P    +  +I       R+E  +T
Sbjct: 463 QPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKT 522

Query: 464 LNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV-LGCLQLPYNADIRE 522
           L   + S   G       +T+L  +  +       I  +EV+  V L      YNA I  
Sbjct: 523 LLGKMQS--QGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINA 580

Query: 523 RLVENLG---------VSADALKRSNLC--SLIDGFGE--YDPRAFSLLEEAASFGIVPC 569
                L          + AD LK S L   SLI+ FGE   D  AFS+L+      + P 
Sbjct: 581 YAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPD 640

Query: 570 V 570
           V
Sbjct: 641 V 641



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 2/170 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P  +T+N++++     +  E    +L  +Q  GL A+   YTTL+    +SG+     E
Sbjct: 498 SPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIE 557

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
               M + G++P+   Y ALI+  A+ G   +A  A+ +MR+  +KP  +V N+LI A G
Sbjct: 558 CLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVLNSLINAFG 617

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           +      AF VL  M    + + PD +T   LMKA     + D+   VY+
Sbjct: 618 EDRRDAEAFSVLQYMKE--NDLKPDVVTYTTLMKALIRVEKFDKVPAVYE 665



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 80/197 (40%), Gaps = 18/197 (9%)

Query: 18  HANYAHDVSEQLH---------SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH 64
           H N A ++ E +          +YN +I     Q R  +   LL  M+ +GLL  + V +
Sbjct: 481 HHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLL-ANVVTY 539

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
               ++       K+A    +++ +    P+ + +N L++  A    SE A    R+++ 
Sbjct: 540 TTLVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRA 599

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
            GLK    +  +LI    +  +    F V   M    ++P+V TY  L+    +  +  K
Sbjct: 600 DGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDK 659

Query: 181 AFGAYGIMRSKNVKPDR 197
               Y  M      PDR
Sbjct: 660 VPAVYEEMTLSGCTPDR 676


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 187/423 (44%), Gaps = 39/423 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L   GR++E +D + +M R G+L                                PT+
Sbjct: 306 NGLCNSGRVNEALDFISEMTRHGVL--------------------------------PTV 333

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM-FEVFH 151
            TF   +         E A+++   +++ G K +   YT+LI+      +V  M   +FH
Sbjct: 334 HTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLIS----GQRVSRMAIGLFH 389

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G+ PN  TY AL++   +  ++  A   + +M      P+   +N LI      G
Sbjct: 390 RMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIG 449

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             ++A  +L  M  +  P  P  +T   ++K   ++G  D A  V +++     +     
Sbjct: 450 DTEKAMSMLTNM-LKGRPT-PTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWS 507

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           YT  I+   +    E A  ++++M  +G+ P+EV  +ALI       K++ A  +L+  K
Sbjct: 508 YTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMK 567

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G    + +Y+ L+   +   N+  A EL + M   K+ P V T + +I  LC+   +P
Sbjct: 568 RSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIP 627

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             +E+ + M   G  PN  TYS L+ A  ++  VE    + S+ K+ G+IP+ V +  +I
Sbjct: 628 LALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMI 687

Query: 452 GMC 454
            +C
Sbjct: 688 EVC 690



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 113/466 (24%), Positives = 196/466 (42%), Gaps = 31/466 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPN 89
           N L+    I   + +   M + G L     Y+      C    ++KA+       K  P 
Sbjct: 408 NVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPT 467

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PTL T+N+++     S D++ A +VL L++  G + D   YT LI+   K  K++    +
Sbjct: 468 PTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGM 527

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+EM++ G+ PN  TY ALI G  K  ++  A      M+    +P+   +N LI    +
Sbjct: 528 FNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTK 587

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
                 A ++   M  E   + PD +T   ++    N G +  A E++  + K+      
Sbjct: 588 QNNFSGAEELCKVMLEE--KISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNL 645

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  I    Q G  E A  ++ ++ K+G+IPDEV    +I+    +GKV+ AF+ L E
Sbjct: 646 HTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGE 705

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALE----------------------LYEHMKS 367
             N G    + +Y  L+    N   + K +                       L   +  
Sbjct: 706 MINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAE 765

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
           +  + +    +AL++ L    +  +   +   M S   CPN  TY   L++  R   V++
Sbjct: 766 LDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDL 825

Query: 428 GLMLLSQAKEDGVIPNLVMFK---CIIGMCSRRYEKARTLNEHVLS 470
            + +     +     +L  +K   C +    RR E AR + E +LS
Sbjct: 826 AMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKE-ARFVFEKMLS 870



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 154/358 (43%), Gaps = 6/358 (1%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           ++  C++  +   A   L +  + G K     YTTL+    K      + + +H+++  G
Sbjct: 164 MIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREG 223

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           ++PN+  Y ++I+   K G V  A      +    +KPD   + ++I    ++  +D AF
Sbjct: 224 LQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAF 283

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
           ++   M+ E    +P+  T   L+    N+G+V+ A +    + ++ +  T   +T  I 
Sbjct: 284 EIFNRMDEE--GCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIV 341

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
                G  E A  ++ DM KKG  P+    ++LI  +G       A  +       G+  
Sbjct: 342 ALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLI--SGQRVS-RMAIGLFHRMSRDGVVP 398

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
             ++Y++LM           AL ++  M      P  S+ N LI   C      K M +L
Sbjct: 399 NTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSML 458

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           ++M      P  +TY+I++       D +V + +L   K +G  P+   +  +I G C
Sbjct: 459 TNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFC 516


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 180/395 (45%), Gaps = 9/395 (2%)

Query: 77  IKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +++A + F ++       P   ++++L+         E AF +   + E G +   + YT
Sbjct: 246 LRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYT 305

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            LI      G +D  F +F EM+  G +PNVHTY  LIDG  + G++ +A G    M   
Sbjct: 306 VLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKD 365

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + P  + +NALI    + G V  AF++L  M  E     P+  T   LM+     G+  
Sbjct: 366 RIFPSVITYNALINGYCKDGRVVPAFELLTVM--EKRACKPNVRTFNELMEGLCRVGKPY 423

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +A  + K +    +      Y + I+   + G    A  +   M    + PD +  +A+I
Sbjct: 424 KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAII 483

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           +     GK + A   L     +GIS+  ++ ++L+         + AL + E +  +++ 
Sbjct: 484 NAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRIL 543

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
            T  ++N ++  L  G ++ + + +L  +  LGL P+ +TY+ L+    R  D+     +
Sbjct: 544 TTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRI 603

Query: 432 LSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 464
           L   K  G +PN+  +  II G+C   R E+A  L
Sbjct: 604 LELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKL 638



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 172/394 (43%), Gaps = 11/394 (2%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-K 85
           SY+ LI      GR+ E   L + M  KG     + Y      +C  +  I +AF  F +
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALC-DRGLIDKAFNLFDE 326

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++P    P + T+ +L+         E A  V R + +  +      Y  LI    K G+
Sbjct: 327 MIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGR 386

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           V   FE+   M     +PNV T+  L++G  + G+  KA      M    + PD V +N 
Sbjct: 387 VVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNV 446

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    + G ++ A+ +L+ MN     ++PD +T  A++ A    G+ D A     ++ +
Sbjct: 447 LIDGLCREGHMNTAYKLLSSMNC--FDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLR 504

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I       T  I+   + G    A  + + + K  ++     L+ ++D      KV+ 
Sbjct: 505 KGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKE 564

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
              +L +    G+   +++Y++L+     + +   +  + E MK     P V     +I 
Sbjct: 565 ELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIIN 624

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            LC   ++ +  ++LS M+  G+ PN +TY++++
Sbjct: 625 GLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMV 658



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 168/394 (42%), Gaps = 9/394 (2%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
            +Y  LI+    +G I +  +L ++M  +G       Y      +C+  K  +      K
Sbjct: 302 RTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRK 361

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +V +   P++ T+N L++          AF++L ++++   K + + +  L+    + GK
Sbjct: 362 MVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGK 421

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                 +   M++ G+ P++ +Y  LIDG  + G +  A+     M   +++PD + F A
Sbjct: 422 PYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTA 481

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I A  + G  D A   L  M  +   +  D +T   L+      G+   A  + + + K
Sbjct: 482 IINAFCKQGKADVASAFLGLMLRK--GISLDEVTGTTLIDGVCKVGKTRDALFILETLVK 539

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I  TP    + ++  S+    +   ++   + K G++P  V  + L+D    +G +  
Sbjct: 540 MRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITG 599

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           +F IL+  K  G    +  Y+ ++         ++A +L   M+   + P   T   ++ 
Sbjct: 600 SFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVK 659

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
              +  +L + +E +  M   G   N   YS LL
Sbjct: 660 GYVNNGKLDRALETVRAMVERGYELNDRIYSSLL 693



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 149/329 (45%), Gaps = 12/329 (3%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A+   R ++  G       Y T++    K+G  +A      +++  G   + H   +L+ 
Sbjct: 179 AYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLL 238

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           G  +   +  A   + +M SK V   P+ V ++ LI    + G ++ AF +  +M  +  
Sbjct: 239 GFCRGLNLRDALKVFDVM-SKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEK-- 295

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
              P   T   L+KA  + G +D+A  ++  +     K     YT+ I+   + G  E A
Sbjct: 296 GCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEA 355

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-G 347
             V   M K  + P  +  +ALI+     G+V  AFE+L   + +     + +++ LM G
Sbjct: 356 NGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEG 415

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
            C   K + KA+ L + M    L P + + N LI  LC    +    ++LS M    + P
Sbjct: 416 LCRVGKPY-KAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEP 474

Query: 408 NTITYSILLVA-CER-KDDVE---VGLML 431
           + +T++ ++ A C++ K DV    +GLML
Sbjct: 475 DCLTFTAIINAFCKQGKADVASAFLGLML 503


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 194/456 (42%), Gaps = 40/456 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAF-RFFKLVPN 89
           N +  QG + E + LL  +   G       Y+A    +C +++   ++E      ++   
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN L+     +   E   +VL  + E G   D ++Y T+I    K G ++   E+
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M + G++PNV  Y  ++ G   A +  +A      M  K+   D V FN L+    Q
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G VDR  ++L +M +  H   PD IT   ++      G +D A  + K +     K   
Sbjct: 369 NGLVDRVIELLEQMLS--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YTI +      G W  A  +   M ++G  P+ V  + LI+F    G VE A E+L++
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G S  +ISYS+++     A   ++ALEL                            
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALEL---------------------------- 518

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
                  L+ M + G+ PNTI YS +  A  R+  V   + +    K+  +  + V++  
Sbjct: 519 -------LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571

Query: 450 IIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
           +I    +R+E  R ++      ++G    E+ +T L
Sbjct: 572 VISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/468 (22%), Positives = 189/468 (40%), Gaps = 40/468 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L  +GRI++ +++L++M  KG   +  +YH      C+S       FR            
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSG-----GFR------------ 163

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
                           + +VL  +   G   D      ++    + G VD    +  ++ 
Sbjct: 164 ---------------NSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLA 208

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G E ++ +Y A++ G   A +          M   +  P+ V FN LI    ++G  +
Sbjct: 209 FFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFE 268

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           R  +VLA+M+   H   PD      ++      G ++ A E+   +  Y +K     Y  
Sbjct: 269 RVHEVLAQMSE--HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            +        W+ A  +  +M +K    D+V  + L+DF    G V+   E+L++  + G
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
               +I+Y++++          +A+ L + M S   KP   +   ++  LC   +     
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII--- 451
           E++S M   G  PN +T++ L+    +K  VE  + LL Q   +G  P+L+ +  +I   
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506

Query: 452 GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 499
           G   +  E    LN  V   N G       ++S+A  + RE  V   I
Sbjct: 507 GKAGKTEEALELLNVMV---NKGISPNTIIYSSIACALSREGRVNKVI 551



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 2/238 (0%)

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
           PV P+  T   +++     G++  A EV   +        P +Y + +    ++G +  +
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNS 165

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             V + M  KG   D    + +++     G V+ A  +L++    G    I+SY++++  
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              AK W    EL + M  +   P + T N LI  LC      +  EVL+ M   G  P+
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 464
              Y+ ++    ++  +EV   +L++    G+ PN+V +  ++ G+CS  R+++A  L
Sbjct: 286 IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEEL 343



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/193 (18%), Positives = 86/193 (44%), Gaps = 5/193 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L   GR  +  +L+  M ++G       ++     +CK +  +++A    K +     +P
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK-KGLVEQAIELLKQMLVNGCSP 494

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L +++ ++     +  +E A ++L ++   G+  +  +Y+++    ++ G+V+ + ++F
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             + +  I  +   Y A+I    K  +  +A   +  M S    P+   +  LI      
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 211 GAVDRAFDVLAEM 223
           G    A ++L+E+
Sbjct: 615 GLAKEAQELLSEL 627


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 194/456 (42%), Gaps = 40/456 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAF-RFFKLVPN 89
           N +  QG + E + LL  +   G       Y+A    +C +++   ++E      ++   
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN L+     +   E   +VL  + E G   D ++Y T+I    K G ++   E+
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M + G++PNV  Y  ++ G   A +  +A      M  K+   D V FN L+    Q
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G VDR  ++L +M +  H   PD IT   ++      G +D A  + K +     K   
Sbjct: 369 NGLVDRVIELLEQMLS--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YTI +      G W  A  +   M ++G  P+ V  + LI+F    G VE A E+L++
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G S  +ISYS+++     A   ++ALEL                            
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALEL---------------------------- 518

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
                  L+ M + G+ PNTI YS +  A  R+  V   + +    K+  +  + V++  
Sbjct: 519 -------LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571

Query: 450 IIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
           +I    +R+E  R ++      ++G    E+ +T L
Sbjct: 572 VISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/468 (22%), Positives = 189/468 (40%), Gaps = 40/468 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L  +GRI++ +++L++M  KG   +  +YH      C+S       FR            
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSG-----GFR------------ 163

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
                           + +VL  +   G   D      ++    + G VD    +  ++ 
Sbjct: 164 ---------------NSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLA 208

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G E ++ +Y A++ G   A +          M   +  P+ V FN LI    ++G  +
Sbjct: 209 FFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFE 268

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           R  +VLA+M+   H   PD      ++      G ++ A E+   +  Y +K     Y  
Sbjct: 269 RVHEVLAQMSE--HGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNT 326

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            +        W+ A  +  +M +K    D+V  + L+DF    G V+   E+L++  + G
Sbjct: 327 VLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHG 386

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
               +I+Y++++          +A+ L + M S   KP   +   ++  LC   +     
Sbjct: 387 CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAE 446

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII--- 451
           E++S M   G  PN +T++ L+    +K  VE  + LL Q   +G  P+L+ +  +I   
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506

Query: 452 GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 499
           G   +  E    LN  V   N G       ++S+A  + RE  V   I
Sbjct: 507 GKAGKTEEALELLNVMV---NKGISPNTIIYSSIACALSREGRVNKVI 551



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 2/238 (0%)

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
           PV P+  T   +++     G++  A EV   +        P +Y + +    ++G +  +
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNS 165

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             V + M  KG   D    + +++     G V+ A  +L++    G    I+SY++++  
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              AK W    EL + M  +   P + T N LI  LC      +  EVL+ M   G  P+
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 464
              Y+ ++    ++  +EV   +L++    G+ PN+V +  ++ G+CS  R+++A  L
Sbjct: 286 IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEEL 343



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/193 (18%), Positives = 86/193 (44%), Gaps = 5/193 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L   GR  +  +L+  M ++G       ++     +CK +  +++A    K +     +P
Sbjct: 436 LCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCK-KGLVEQAIELLKQMLVNGCSP 494

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L +++ ++     +  +E A ++L ++   G+  +  +Y+++    ++ G+V+ + ++F
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             + +  I  +   Y A+I    K  +  +A   +  M S    P+   +  LI      
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 211 GAVDRAFDVLAEM 223
           G    A ++L+E+
Sbjct: 615 GLAKEAQELLSEL 627


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 132/559 (23%), Positives = 242/559 (43%), Gaps = 33/559 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N   + G++ E    ++ ME  G+      YH+   N   S   ++ A    K +    +
Sbjct: 234 NAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHS-LINGYVSLGDVEAAKGVLKFMSEKGV 292

Query: 93  S----TFNMLM-SVCASSKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAM 146
           S    T+ +L+   C   K  E A +VLR +QE A L  D + Y  LI    ++GK+D  
Sbjct: 293 SRNVVTYTLLIKGYCKQCKMDE-AEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDA 351

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +  EM+  G++ N+    +LI+G  K G++ +A G    M   N+KPD   +N L+  
Sbjct: 352 VRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDG 411

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G    AF++  +M  E   ++P  +T   L+K     G  D A +++ ++ K  + 
Sbjct: 412 YCREGHTSEAFNLCDKMLQE--GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVA 469

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+  ++   +  ++E A +++ D+  +G     +  + +I      GK+  A EI
Sbjct: 470 PDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEI 529

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             + K+ G S   I+Y +L+     A N  +A ++   M+   + P++   N+LI+ L  
Sbjct: 530 FDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFK 589

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L +  ++L++M   GL PN +TY  L+    ++  ++       +  E+G+  N+++
Sbjct: 590 SRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIII 649

Query: 447 FKCIIGMCSR--RYEKARTL------------NEHVLSFNSGRPQIENKWTSLALMVYRE 492
              ++    R  R ++A  L            +E  L  +     I+    SL      E
Sbjct: 650 CSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLD-----E 704

Query: 493 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GE 549
           +     +P   V +  +  L      D   R    L +          C+LI G+   G 
Sbjct: 705 SCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGN 764

Query: 550 YDPRAFSLLEEAASFGIVP 568
            D  AF L +E    G+VP
Sbjct: 765 VD-EAFRLRDEMLRRGLVP 782



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 189/411 (45%), Gaps = 22/411 (5%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA 103
           L +D+  +G       ++     +CK  K ++    F K+     +P   T+  L+    
Sbjct: 494 LWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYC 553

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
            + +   AF+V   ++   +    ++Y +LI+   KS ++  + ++  EM   G+ PN+ 
Sbjct: 554 KASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIV 613

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           TYGALIDG  K G + KAF +Y  M    +  + ++ + +++   + G +D A  ++ +M
Sbjct: 614 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 673

Query: 224 NAEVHPVDPDH-------ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
               H   PDH       I   A+ K    A  +D + + + + +  NI     VY IAI
Sbjct: 674 VD--HGFFPDHECFLKSDIRYAAIQKI---ADSLDESCKTFLLPN--NI-----VYNIAI 721

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
               +TG  + A   +  ++ KG +PD      LI     AG V+ AF +  E   +G+ 
Sbjct: 722 AGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLV 781

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             I++Y++L+     ++N  +A  L+  +    L P V T N LI   C    +    ++
Sbjct: 782 PNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 841

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
              M   G+ P+ +TYS L+    +  D+E  + LL+Q  + GV   L+ +
Sbjct: 842 KDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEY 892



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 161/397 (40%), Gaps = 36/397 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+L + N L++    + ++  A  V + +   G+  D  + + ++    K GKVD     
Sbjct: 189 PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGF 248

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M N G+EPN+ TY +LI+G    G V  A G    M  K V  + V +  LI    +
Sbjct: 249 VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 308

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A  VL  M  E   V PD    G L+      G++D A  +   + +  +K   
Sbjct: 309 QCKMDEAEKVLRGMQEEAALV-PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNL 367

Query: 270 EVYTIAINCCSQTG-------------DWEFACSVY----------------------DD 294
            +    IN   + G             DW      Y                      D 
Sbjct: 368 FICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDK 427

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M ++G+ P  +  + L+      G  + A +I      +G++   + YS+L+      +N
Sbjct: 428 MLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMEN 487

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           ++ A  L++ + +     +  T N +I+ LC   ++ +  E+   MK LG  P+ ITY  
Sbjct: 488 FEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRT 547

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L+    +  +V     +    + + + P++ M+  +I
Sbjct: 548 LIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLI 584



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 179/417 (42%), Gaps = 15/417 (3%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQK-------AIKEAFRFFKLVPNPTLSTFNMLM 99
           L+  + R  + D  + Y  +  ++CK +         +   +R F   P    + F+M++
Sbjct: 108 LVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSP----TVFDMIL 163

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
            V      ++ A  V   + + G     +   +L+    K+G+      V+ +M+  GI 
Sbjct: 164 KVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIV 223

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P+V     +++   K G+V +A G    M +  V+P+ V +++LI      G V+ A  V
Sbjct: 224 PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGV 283

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINC 278
           L  M+ +   V  + +T   L+K      ++D A +V + M  +  +      Y + I+ 
Sbjct: 284 LKFMSEK--GVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 341

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             +TG  + A  + D+M + G+  +    ++LI+     G++  A  ++    +  +   
Sbjct: 342 YCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPD 401

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
             SY++L+       +  +A  L + M    ++PTV T N L+  LC        +++  
Sbjct: 402 SYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWH 461

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            M   G+ P+ + YS LL    + ++ E    L       G   + + F  +I G+C
Sbjct: 462 LMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLC 518



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 144/349 (41%), Gaps = 14/349 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  +  YN LI    +  R+ E  DLL +M  +GL      Y A     CK     K  
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 632

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLKADCKLYTTLITT 136
             +F++  N  LS   ++ S   S     G      L+ +     G   D   +   + +
Sbjct: 633 SSYFEMTEN-GLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD---HECFLKS 688

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             +   +  + +   E     + PN   Y   I G  K G+V  A   + ++  K   PD
Sbjct: 689 DIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPD 748

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
              +  LI     +G VD AF +  EM      + P+ +T  AL+     +  VDRA+ +
Sbjct: 749 NFTYCTLIHGYSAAGNVDEAFRLRDEMLRR--GLVPNIVTYNALINGLCKSENVDRAQRL 806

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  +H+  +      Y   I+   + G+ + A  + D M ++G+ P  V  SALI+    
Sbjct: 807 FHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCK 866

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
            G +E + ++L +    G+   +I Y +L+     +   QK  +LY+ M
Sbjct: 867 HGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMM 915


>gi|298712109|emb|CBJ32990.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 650

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 194/459 (42%), Gaps = 44/459 (9%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE-AFRFFKLVPNPTLS--T 94
           +G+  E + LL+ M   G+      Y++   ++ KS +  +  A R   L     L   T
Sbjct: 36  RGQWREVLRLLDKMAEDGIPLNSYAYNSALSSIAKSGRWREALALRDRMLSEGVRLDGYT 95

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F+ L+  C+   +     ++LR + +AG+  DC  Y   +    ++G       +  +MV
Sbjct: 96  FSALIEACSKGGNVAKGVELLREMVDAGVARDCFSYNAALHGFVRNGDSKNALLMLEDMV 155

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+ P+  TYG L+  C  +G+          MRS+ + P+   F+ LI ACG+ G   
Sbjct: 156 ADGVRPDAITYGTLLACCGNSGEWKLCMSLMDRMRSEGITPNAYSFSPLIKACGKEGRWA 215

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-----TP 269
            A   L +M A   P   +H  + A+  AC NAGQ + A  +   +    + G     + 
Sbjct: 216 LAVKTLEDMEAS-GPTPNEHNWLMAI-GACGNAGQWEEALRLIDKLEALALGGEGVPMST 273

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDM-TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            +Y   I+ C++ G W+   ++ + M +     PD    S LID       +E A   L 
Sbjct: 274 TMYNFGIDACARAGRWDQGVALLERMKSNPATPPDAQTYSYLIDACAKDANLEDALAYLT 333

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E +  G++    +Y S M A   A  W++AL L + M   +L   V +   ++ A     
Sbjct: 334 EMRAVGLAPTFFAYISAMSAIKVAGQWKEALSLLDEMAKGRLISDVFSFYNVVDAYGKDG 393

Query: 389 QLPKTM---------------------------------EVLSDMKSLGLCPNTITYSIL 415
           QL +T+                                 E++  M++ G+  + ++++IL
Sbjct: 394 QLARTLVQTSANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNIL 453

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           + AC R         LL++ K  G+ PN + +  II  C
Sbjct: 454 IDACARGGSHWAAARLLTKMKSLGLRPNSLSYNPIIHSC 492



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 109/498 (21%), Positives = 201/498 (40%), Gaps = 68/498 (13%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           +  ++   +S++ LI+    +GR +  +  LEDME  G                      
Sbjct: 191 SEGITPNAYSFSPLIKACGKEGRWALAVKTLEDMEASG---------------------- 228

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE-----AGLKADCKLYTT 132
                     P P    + M +  C ++   E A +++  ++       G+     +Y  
Sbjct: 229 ----------PTPNEHNWLMAIGACGNAGQWEEALRLIDKLEALALGGEGVPMSTTMYNF 278

Query: 133 LITTCAKSGKVDAMFEVFHEM-VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            I  CA++G+ D    +   M  N    P+  TY  LID CAK   +  A      MR+ 
Sbjct: 279 GIDACARAGRWDQGVALLERMKSNPATPPDAQTYSYLIDACAKDANLEDALAYLTEMRAV 338

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + P    + + ++A   +G    A  +L EM A+   +  D  +   ++ A    GQ+ 
Sbjct: 339 GLAPTFFAYISAMSAIKVAGQWKEALSLLDEM-AKGRLIS-DVFSFYNVVDAYGKDGQLA 396

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW--EFACSVYDDMTKKGVIPDEVFLSA 309
           R   V    +   I    E     +   +    W  E    +   M   GV  D +  + 
Sbjct: 397 RTL-VQTSANPTEIAADSEN---EMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNI 452

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN--WQKALELYEHMKS 367
           LID     G   AA  +L + K+ G+    +SY+ ++ +C    +  W+ AL+L + M+ 
Sbjct: 453 LIDACARGGSHWAAARLLTKMKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALDLLDEMRK 512

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             L P V + N  IT+        +++ + + MK  G+ P+ ++Y+ ++ AC +     +
Sbjct: 513 SGLTPDVISFNTAITSCAKAGDWRRSLNLFAGMKVEGVTPDILSYNAVISACAKGGQWRI 572

Query: 428 GLMLLSQAKEDGVI-PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLA 486
           GL LL++ + D  +  N   +   I  C ++++  ++    V S  S          +LA
Sbjct: 573 GLELLAKVRADPTLEANQRTYTSAIN-CFQQFQGGQS----VASLAS----------TLA 617

Query: 487 LMVYREAIVAGTIPTVEV 504
               RE ++   IPT +V
Sbjct: 618 GQSSREEMLLNPIPTSDV 635



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 248 GQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
           G   + REV +++ K    G P     Y  A++  +++G W  A ++ D M  +GV  D 
Sbjct: 34  GARGQWREVLRLLDKMAEDGIPLNSYAYNSALSSIAKSGRWREALALRDRMLSEGVRLDG 93

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
              SALI+     G V    E+L+E  + G++    SY++ +       + + AL + E 
Sbjct: 94  YTFSALIEACSKGGNVAKGVELLREMVDAGVARDCFSYNAALHGFVRNGDSKNALLMLED 153

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M +  ++P   T   L+    +  +    M ++  M+S G+ PN  ++S L+ AC ++  
Sbjct: 154 MVADGVRPDAITYGTLLACCGNSGEWKLCMSLMDRMRSEGITPNAYSFSPLIKACGKEGR 213

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
             + +  L   +  G  PN   +   IG C    ++E+A  L
Sbjct: 214 WALAVKTLEDMEASGPTPNEHNWLMAIGACGNAGQWEEALRL 255


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 185/437 (42%), Gaps = 25/437 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA------ 80
           +YN LI    R   I + ++L+  M + G       Y + F N     +++  +      
Sbjct: 170 TYNALIGACARNNDIEKALNLIAKMRQDG-------YQSDFVNYSLVIQSLTRSNKIDSV 222

Query: 81  --FRFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
              R +K +    L       N ++   A S D   A Q+L + Q  GL A      ++I
Sbjct: 223 MLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSII 282

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +  A SG+      +F E+  +GI+P    Y AL+ G  K G +  A      M  + V 
Sbjct: 283 SALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVS 342

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD   ++ LI A   +G  + A  VL EM  E   V P+      L+    + G+  +  
Sbjct: 343 PDEHTYSLLIDAYVNAGRWESARIVLKEM--EAGDVQPNSFVFSRLLAGFRDRGEWQKTF 400

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           +V K +    +K   + Y + I+   +    + A + +D M  +G+ PD V  + LID  
Sbjct: 401 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 460

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G+   A E+ +  + +G      +Y+ ++ +  + + W     L   MKS  + P V
Sbjct: 461 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 520

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T   L+       +    +E L +MKS+GL P++  Y+ L+ A  ++   E  +     
Sbjct: 521 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 580

Query: 435 AKEDGVIPNLVMFKCII 451
              DG+ P+L+    +I
Sbjct: 581 MTSDGLKPSLLALNSLI 597



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 155/337 (45%), Gaps = 2/337 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+     +   + A  ++  +++ G+  D   Y+ LI     +G+ ++   V
Sbjct: 308 PRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIV 367

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM    ++PN   +  L+ G    G+  K F     M+S  VKPDR  +N +I   G+
Sbjct: 368 LKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 427

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A      M +E   ++PD +T   L+      G+   A E+++ + +       
Sbjct: 428 FNCLDHAMTTFDRMLSE--GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCA 485

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN       W+    +   M  +G++P+ V  + L+D  G +G+   A E L+E
Sbjct: 486 TTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEE 545

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K+ G+      Y++L+ A +     ++A+  +  M S  LKP++  +N+LI A  +  +
Sbjct: 546 MKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRR 605

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
             +   VL  MK  G+ P+ +TY+ L+ A  R D  +
Sbjct: 606 DAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQ 642



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 124/544 (22%), Positives = 214/544 (39%), Gaps = 126/544 (23%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           LY+ LI    +S K   ++E F       + P   TY ALI  CA+   + KA      M
Sbjct: 140 LYSILIHALGRSEK---LYEAFLLSQKQTLTP--LTYNALIGACARNNDIEKALNLIAKM 194

Query: 189 RSKNVKPDRVVFNALITACGQSGAVD-----RAFDVLA--EMNAEVHPV----------- 230
           R    + D V ++ +I +  +S  +D     R +  +   ++  +V  V           
Sbjct: 195 RQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSG 254

Query: 231 DPDH-----------------ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           DP                    T+ +++ A A++G+   A  +++ + +  IK     Y 
Sbjct: 255 DPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYN 314

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             +    +TG  + A S+  +M K+GV PDE   S LID   +AG+ E+A  +L+E +  
Sbjct: 315 ALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAG 374

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            +      +S L+    +   WQK  ++ + MKSI +KP     N +I      + L   
Sbjct: 375 DVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHA 434

Query: 394 MEVLSDMKSLGLCPNTITYSILL------------------------VAC---------- 419
           M     M S G+ P+ +T++ L+                        + C          
Sbjct: 435 MTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINS 494

Query: 420 ----ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 475
               ER DD++    LL + K  G++PN+V    ++ +    Y K+   N+         
Sbjct: 495 YGDQERWDDMK---RLLGKMKSQGILPNVVTHTTLVDV----YGKSGRFND--------- 538

Query: 476 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV-SADA 534
                     A+    E    G  P+  + + ++          + E+ V    V ++D 
Sbjct: 539 ----------AIECLEEMKSVGLKPSSTMYNALINAYA---QRGLSEQAVNAFRVMTSDG 585

Query: 535 LKRSNLC--SLIDGFGE--YDPRAFSLLEEAASFGIVPCV--------------SFKEIP 576
           LK S L   SLI+ FGE   D  AF++L+     G+ P V               F+++P
Sbjct: 586 LKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVP 645

Query: 577 VVVD 580
           VV +
Sbjct: 646 VVYE 649


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/357 (29%), Positives = 162/357 (45%), Gaps = 24/357 (6%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N    +C   K  + AFQ+++ +   G   D   Y+ +IT    + KV+  F +F EM  
Sbjct: 427 NFARCLCGVGK-FDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM 485

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G+ P+V+TY  LID   KAG + +A   +  MRS    P  V + ALI A  ++  V +
Sbjct: 486 VGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQ 545

Query: 216 AFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           A D+   M +A   P D   +T GAL+     AG + +A EVY       + GT +    
Sbjct: 546 ANDIFHRMVDAGCRPND---VTYGALVDGLCKAGNISKAFEVYA-----KLIGTSD---- 593

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
                S   D+ F C       +  + P+ V   AL+D    A KV+ A E+L    + G
Sbjct: 594 -----SADSDFYFPCE-----DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSG 643

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
                I Y +L+     A     A E++  M      P+V T  +LI  +    +L   M
Sbjct: 644 CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAM 703

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +VLS M      PN +TY+ ++    R  + E  L LLS  +E G  PN+V +  +I
Sbjct: 704 KVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALI 760



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 147/341 (43%), Gaps = 49/341 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P  ST++ +++    +   E AF + + ++  G+  D   YT LI +  K+G ++    +
Sbjct: 455 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 514

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM + G  P V TY ALI    KA QV +A   +  M     +P+ V + AL+    +
Sbjct: 515 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 574

Query: 210 SGAVDRAFDVLAEMNA--------------EVHPVDPDHITIGALMKACANAGQVDRARE 255
           +G + +AF+V A++                + H + P+ +T GAL+     A +VD A E
Sbjct: 575 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 634

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
                                              + D M   G  P+ +   ALID   
Sbjct: 635 -----------------------------------LLDAMLSSGCEPNHIVYDALIDGFC 659

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            AGK+++A E+  +    G    + +Y+SL+           A+++   M      P V 
Sbjct: 660 KAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVV 719

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           T  A+I  LC   +  K +++LS M+  G  PN +TY+ L+
Sbjct: 720 TYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALI 760



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 167/392 (42%), Gaps = 12/392 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
            R  R G  +E ++ L  ++  G       Y+A    V  S   +   FR  K +     
Sbjct: 182 RRCCRGGMWNEALEELGRLKDFGYRPSKVTYNA-LVQVLSSAGQVDLGFRVQKEMSESGF 240

Query: 93  STFNMLMSVCASSKDSEGAF-QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
                 +   A +   EG +   L +++    K D  L T +I+   ++   D      H
Sbjct: 241 CMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLH 300

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M      PNV TY  L+ G  K  Q+        +M ++   P+  +FN+L+ +     
Sbjct: 301 RMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEK 360

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHIT----IGAL--MKACANAGQVDRAREVY-KMIHKYN 264
               A+ +L  M     P  P ++     IG++   +   +   +D A ++Y +M+    
Sbjct: 361 DYAYAYKLLNRMTTCGCP--PGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANC 418

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +     V   A  C    G ++ A  +  +M +KG +PD    S +I F  HA KVE AF
Sbjct: 419 VLNKVNVANFA-RCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAF 477

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            + QE K  G++  + +Y+ L+ +   A   ++A  L+E M+S+   PTV T  ALI A 
Sbjct: 478 LLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAY 537

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
               Q+P+  ++   M   G  PN +TY  L+
Sbjct: 538 LKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 569



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 166/393 (42%), Gaps = 33/393 (8%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
           PNP+L  FN L+    + KD   A+++L  +   G      +Y   I +     K+    
Sbjct: 344 PNPSL--FNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPD 401

Query: 144 --DAMFEVFHEMVNAGI---EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
             D   +++ EM+ A     + NV  +   + G    G+  KAF     M  K   PD  
Sbjct: 402 LLDLAEKIYGEMLAANCVLNKVNVANFARCLCG---VGKFDKAFQLIKEMMRKGFVPDTS 458

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            ++ +IT    +  V++AF +  EM  ++  V PD  T   L+ +   AG +++A+ +++
Sbjct: 459 TYSKVITFLCHATKVEKAFLLFQEM--KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFE 516

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +       T   YT  I+   +      A  ++  M   G  P++V   AL+D    AG
Sbjct: 517 EMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAG 576

Query: 319 KVEAAFEILQE----------------AKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
            +  AFE+  +                     ++  +++Y +L+     A     A EL 
Sbjct: 577 NISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELL 636

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           + M S   +P     +ALI   C   ++    EV   M   G  P+  TY+ L+    + 
Sbjct: 637 DAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKD 696

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
             +++ + +LSQ  +D   PN+V +  +I G+C
Sbjct: 697 GRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLC 729



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 142/334 (42%), Gaps = 58/334 (17%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLST 94
           G+  +   L+++M RKG +     Y      +C + K +++AF  F+ +      P + T
Sbjct: 436 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATK-VEKAFLLFQEMKMVGVTPDVYT 494

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + +L+     +   E A  +   ++  G       YT LI    K+ +V    ++FH MV
Sbjct: 495 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 554

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM----------------RSKNVKPDRV 198
           +AG  PN  TYGAL+DG  KAG ++KAF  Y  +                    + P+ V
Sbjct: 555 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 614

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY- 257
            + AL+    ++  VD A ++L  M +     +P+HI   AL+     AG++D A+EV+ 
Sbjct: 615 TYGALVDGLCKAHKVDHAHELLDAMLSS--GCEPNHIVYDALIDGFCKAGKIDSAQEVFL 672

Query: 258 --------KMIHKYNI------------------------KGTPEV--YTIAINCCSQTG 283
                     +H Y                            TP V  YT  I+   + G
Sbjct: 673 QMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIG 732

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + E A  +   M +KG  P+ V  +ALID  G +
Sbjct: 733 ESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQS 766



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/402 (20%), Positives = 157/402 (39%), Gaps = 47/402 (11%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
            N+L+  C        A + L  +++ G +     Y  L+   + +G+VD  F V  EM 
Sbjct: 177 LNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMS 236

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            +G   +  T G       K G+ A A     ++  ++ K D V+   +I+   ++   D
Sbjct: 237 ESGFCMDRFTVGCFAHALCKEGRWADALD---MIEREDFKLDTVLCTHMISGLMEASYFD 293

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A   L  M    +   P+ +T   L+       Q+   + +  M+        P ++  
Sbjct: 294 EAMSFLHRMRC--NSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNS 351

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSA-----------LIDFAGH--- 316
            ++      D+ +A  + + MT  G  P      +F+ +           L+D A     
Sbjct: 352 LVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYG 411

Query: 317 -----------------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
                                   GK + AF++++E   +G      +YS ++    +A 
Sbjct: 412 EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHAT 471

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             +KA  L++ MK + + P V T   LI + C    + +   +  +M+S+G  P  +TY+
Sbjct: 472 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYT 531

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            L+ A  +   V     +  +  + G  PN V +  ++ G+C
Sbjct: 532 ALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLC 573



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 108/452 (23%), Positives = 178/452 (39%), Gaps = 60/452 (13%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I   +  +GA  DG  KA +V +        R +    D VV   L       GAV  A 
Sbjct: 77  ISKAIRAFGADFDG--KAERVLR--------RCRGFLTDSVVVAVL-------GAVRDAP 119

Query: 218 DVLAE--MNAEVHPVDPDHITIGALMKACANAGQVD-RAREVYKMIHKYNIKGTP---EV 271
           ++ A   + AE   V   H   GA   A A+A   D RAR+  +++ +   +       +
Sbjct: 120 ELCARFFLWAE-RQVGYSHT--GACYDALADALGFDGRARDAERLLREIGEEDREVLGRL 176

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
             + +  C + G W  A      +   G  P +V  +AL+     AG+V+  F + +E  
Sbjct: 177 LNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMS 236

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G  +   +      A      W  AL++ E  +  KL   + T   +I+ L +     
Sbjct: 237 ESGFCMDRFTVGCFAHALCKEGRWADALDMIER-EDFKLDTVLCT--HMISGLMEASYFD 293

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + M  L  M+     PN +TY  LL    +K  +     +++    +G  PN  +F  ++
Sbjct: 294 EAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLV 353

Query: 452 -GMCSRR-YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
              C+ + Y  A  L   + +   G P           +VY   I  G+I   E      
Sbjct: 354 HSYCNEKDYAYAYKLLNRMTT--CGCPP--------GYVVYN--IFIGSICGQEK----- 396

Query: 510 GCLQLPYNADIRERLVENLGVSADALKRSNLCSL---IDGFGEYDPRAFSLLEEAASFGI 566
             L  P   D+ E++   +  +   L + N+ +    + G G++D +AF L++E    G 
Sbjct: 397 --LPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD-KAFQLIKEMMRKGF 453

Query: 567 VPCVSF--KEIPVVVDARKLEIHTAKVSLSFQ 596
           VP  S   K I  +  A K+E    K  L FQ
Sbjct: 454 VPDTSTYSKVITFLCHATKVE----KAFLLFQ 481



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 7/162 (4%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--A 76
           H ++  + +Y  L+    +  ++    +LL+ M   G      VY A     CK+ K  +
Sbjct: 607 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDS 666

Query: 77  IKEAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            +E F +  K    P++ T+  L+         + A +VL  + +     +   YT +I 
Sbjct: 667 AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMID 726

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
              + G+ +   ++   M   G  PNV TY ALIDG  ++ Q
Sbjct: 727 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGQSWQ 768


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 117/479 (24%), Positives = 206/479 (43%), Gaps = 35/479 (7%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR-------------FFN 69
            DV    H   +L+R G + E    LE+M          VYH               F  
Sbjct: 101 EDVESNNH-LRQLVRTGELEEGFKFLENM----------VYHGNVPDIIPCTTLIRGFCR 149

Query: 70  VCKSQKAIK--EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           + K++KA K  E       VP+  + T+N+++S    + +   A  VL       +  D 
Sbjct: 150 MGKTRKAAKILEVLEGSGAVPD--VITYNVMISGYCKAGEINNALSVL---DRMSVSPDV 204

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
             Y T++ +   SGK+    EV   M+     P+V TY  LI+   +   V +A      
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDE 264

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           MR +   PD V +N L+    + G +D A   L +M +      P+ IT   ++++  + 
Sbjct: 265 MRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS--GCQPNVITHNIILRSMCST 322

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G+   A ++   + +     +   + I IN   + G    A  + + M K G  P+ +  
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSY 382

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + L+       K++ A E L+   ++G    I++Y++++ A       + A+E+   + S
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
               P + T N +I  L    +  K +++L +M++  L P+TITYS L+    R+  V+ 
Sbjct: 443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502

Query: 428 GLMLLSQAKEDGVIPNLVMFKCI-IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
            +    + +  GV PN V F  I +G+C  R +  R ++  V   N G    E  +T L
Sbjct: 503 AIKFFHEFERMGVRPNAVTFNSIMLGLCKTR-QTDRAIDFLVYMINRGCKPTETSYTIL 560



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 190/423 (44%), Gaps = 22/423 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAF---- 81
           +YN +I    + G I+  + +L+ M     +  D V Y+    ++C S K +K+A     
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMS----VSPDVVTYNTILRSLCDSGK-LKQAMEVLD 228

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCA 138
           R  +    P + T+ +L+   A+ +DS G  Q ++L+ E    G   D   Y  L+    
Sbjct: 229 RMLQRDCYPDVITYTILIE--ATCRDS-GVGQAMKLLDEMRDRGCTPDVVTYNVLVNGIC 285

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G++D   +  ++M ++G +PNV T+  ++      G+   A      M  K   P  V
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVV 345

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            FN LI    + G + RA D+L +M    H   P+ ++   L+       ++DRA E  +
Sbjct: 346 TFNILINFLCRKGLLGRAIDILEKMPK--HGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +           Y   +    + G  E A  + + ++ KG  P  +  + +ID    AG
Sbjct: 404 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           K   A ++L E + + +    I+YSSL+G  S      +A++ +   + + ++P   T N
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFN 523

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           +++  LC   Q  + ++ L  M + G  P   +Y+IL+     +   +  L LL++    
Sbjct: 524 SIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELLNELCNK 583

Query: 439 GVI 441
           G++
Sbjct: 584 GLM 586


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 114/469 (24%), Positives = 206/469 (43%), Gaps = 43/469 (9%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           Q ++L +E     +   Y +LI    K+GK+D  +E+  EM + GI P V  +  +I G 
Sbjct: 16  QAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGL 75

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
            KAG+   A G +  +      PD + FN L+ A  +SG V+ AF +   M+     + P
Sbjct: 76  CKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCL-P 134

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           + +T   ++      G++DRA E+  ++++         Y++ +    + G  +   ++ 
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            +MT++G  PD +  + L++    + +++ A E++Q     G    +++Y+SLM     +
Sbjct: 195 QEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRS 254

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           K   +A  L + M      P V   N +I  LC   +L     +L  M +    P+ ITY
Sbjct: 255 KQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITY 314

Query: 413 SILLVA-CE--RKD---DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLN 465
           S ++   C+  R D    +E    +L   K+ G  PN   +  +I G+C  R  +     
Sbjct: 315 STIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQ---- 370

Query: 466 EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 525
                               AL + R  I +  +P +   S V+G L   ++ D   ++ 
Sbjct: 371 --------------------ALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKI- 409

Query: 526 ENLGVSADALKRSN---LCSLIDGF---GEYDP--RAFSLLEEAASFGI 566
              G+ ++   + N     +LIDG    GE D   R F L+ E+   G+
Sbjct: 410 --FGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGV 456



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 180/382 (47%), Gaps = 13/382 (3%)

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           + FR  + VPN   +  +++  +C + K  + A+++L  +++ G+     ++  +I    
Sbjct: 19  QLFREERCVPN-EFTYGSLIHGLCKAGKLDQ-AYELLDEMRDRGIPPGVAVHNGVIRGLC 76

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR-SKNVKPDR 197
           K+G+       F  +      P++ T+  L+D   K+G+V +AF  +  M  S    P+ 
Sbjct: 77  KAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNV 136

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V +  +I    + G +DRA ++L  MN       P+ IT   L++    AG+ D+   + 
Sbjct: 137 VTYTTVINGLCKDGKLDRAIELLDLMNET--GCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + + +   +    +Y   +N   ++   + A  +   M + G  P  V  ++L++    +
Sbjct: 195 QEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRS 254

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVST 376
            +V+ AF ++Q    +G    +I+Y++++ G C +A+    A  L + M + +  P V T
Sbjct: 255 KQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR-LDDAQALLKQMVAARCVPDVIT 313

Query: 377 MNALITALC-----DGD-QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            + +I  LC     D D +L    E+L  MK  G  PN  TY++++    R    +  L 
Sbjct: 314 YSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALA 373

Query: 431 LLSQAKEDGVIPNLVMFKCIIG 452
           LL +  +  V+P+L  F  +IG
Sbjct: 374 LLRRMIDSEVVPDLSSFSMVIG 395



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/435 (21%), Positives = 186/435 (42%), Gaps = 16/435 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN---- 89
           L++ GR+ E   + E M        + V +    N +CK  K +  A     L+      
Sbjct: 110 LVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGK-LDRAIELLDLMNETGCC 168

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+++L+     +  ++  F +L+ +   G + D  +Y TL+    KS ++D   E+
Sbjct: 169 PNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALEL 228

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M+ +G  P V TY +L++   ++ QV +AF    +M  +   PD + +N +I    +
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCR 288

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD------RAREVYKMIHKY 263
              +D A  +L +M A      PD IT   ++       +VD       A E+ +M+ + 
Sbjct: 289 DARLDDAQALLKQMVAA--RCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQT 346

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                   Y + I    +    + A ++   M    V+PD    S +I     +  ++AA
Sbjct: 347 GCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAA 406

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           ++I      +      ++Y++L+   S      KA+ ++E M     +P V+T N+++  
Sbjct: 407 YKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE-SFRPGVATYNSVLDG 465

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++ + + ++  M      P+  +Y  L+    R   VE    L    +  G    
Sbjct: 466 LCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAME 525

Query: 444 LVMFKCIIG-MCSRR 457
           + ++  ++  +C ++
Sbjct: 526 VGVYNVLVNELCKKK 540



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 169/368 (45%), Gaps = 18/368 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + GR  +   LL++M R+G      +Y+     +CKS++ + EA    +L+      P
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR-LDEALELVQLMIRSGCYP 239

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+ T+N LM +   SK  + AF++++++ E G   D   Y T+I    +  ++D    + 
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQV------AKAFGAYGIMRSKNVKPDRVVFNALI 204
            +MV A   P+V TY  +IDG  K  +V        A     +M+     P+   +  +I
Sbjct: 300 KQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVI 359

Query: 205 TACGQSGAVDRAFDVLAEM-NAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
               ++    +A  +L  M ++EV P +    + IG+L K+      +D A +++ M+ +
Sbjct: 360 EGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKS----HDLDAAYKIFGMMSE 415

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              K  P  Y   I+  S+ G+ + A  V++ M +    P     ++++D     G++E 
Sbjct: 416 RECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRPGVATYNSVLDGLCGVGRIEE 474

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  +++   ++       SY +L+         ++A EL++ +++      V   N L+ 
Sbjct: 475 AVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVN 534

Query: 383 ALCDGDQL 390
            LC   +L
Sbjct: 535 ELCKKKRL 542



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 143/336 (42%), Gaps = 14/336 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L +  R+ E ++L++ M R G       Y++     C+S K +  AFR  +++     
Sbjct: 214 NGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRS-KQVDRAFRLIQVMSERGC 272

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P +  +N +++        + A  +L+ +  A    D   Y+T+I    K  +VDA + 
Sbjct: 273 PPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWK 332

Query: 148 -----EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                E+   M   G  PN  TY  +I+G  +A +  +A      M    V PD   F+ 
Sbjct: 333 LEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSM 392

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I +  +S  +D A+ +   M+       P+ +   AL+   +  G+VD+A  V++++ +
Sbjct: 393 VIGSLCKSHDLDAAYKIFGMMSE--RECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVE 450

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
               G     ++    C   G  E A  + + M  K   PD     ALI        VE 
Sbjct: 451 SFRPGVATYNSVLDGLCG-VGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEE 509

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           A+E+ Q  + +G ++ +  Y+ L+      K    A
Sbjct: 510 AYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDA 545


>gi|298705454|emb|CBJ28729.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 745

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 181/417 (43%), Gaps = 22/417 (5%)

Query: 56  LLDMDKVYHAR-----------FFNVCKSQKAIKEAFRFFKLVPNPTLST-----FNMLM 99
           LLD   ++H R               C +    +EA    + +   +L+      +N  +
Sbjct: 319 LLDRVLMFHPRDERTVTAAFHGAIKACGNGGQWEEATSLLQRMRQDSLAVVTSREYNAAI 378

Query: 100 SVCASSKDSEGAFQVL--RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-A 156
             C  ++ S  A  +L    V+     AD   Y  ++    + G+   + ++   +   A
Sbjct: 379 MACCRAQQSVAALTLLGDMSVESEHCSADETSYVLVMRAFGREGRWRTVIDLMGSLKEEA 438

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G+ P V +Y  +I+  AKAG+  KA      M+ + V+P    ++  + AC +SG  +R 
Sbjct: 439 GLVPTVSSYNVVIEALAKAGEWMKALEMLAEMKQERVRPTEFTYSRCMAACEKSGEWERT 498

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTI 274
             +LA+M  E   + PD       M AC+ AG++D    + + + + +    P +  Y I
Sbjct: 499 LLLLADMK-EQEDLVPDSYIFSTAMVACSKAGRLDDVLGILQEMREMSATSGPNLVLYNI 557

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
           AI  C++  DW       D M ++ + P+E   +A +D  G  G +  A E+L   +  G
Sbjct: 558 AIGSCARARDWPRMLEEMDRMRREDIEPEESTFAAPLDTCGRTGNLPMALELLDRMREDG 617

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I  G+++Y  ++ A   A     A  L + M++    P   T      A  +G+     +
Sbjct: 618 IKPGVVTYGYVVAAACRAGERTSAALLLDEMEAAGHPPNERTYGVAALACREGNNADAAI 677

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           ++L   +  GL P+ +  S  + AC    +++ GL L+++ K  G  P+   +  +I
Sbjct: 678 DLLRRRQMQGLPPDALILSCAVQACSNAGNMQRGLELITEMKSAGFSPDRAFYHSVI 734



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 150/319 (47%), Gaps = 10/319 (3%)

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G+  +V      +  C+ AG+   A      M+++ ++P+   + A + AC + G +D A
Sbjct: 257 GLPRSVMLRTGAMQACSGAGEWRAALSILEDMQAEGLRPNGAAYVAAMEACARGGVMDLA 316

Query: 217 FDVLAEMNAEVHPVDPDHITIG--ALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT 273
            ++L  +    HP D   +T      +KAC N GQ + A  + + + + ++   T   Y 
Sbjct: 317 LELLDRV-LMFHPRDERTVTAAFHGAIKACGNGGQWEEATSLLQRMRQDSLAVVTSREYN 375

Query: 274 IAINCCSQTGDWEFACSVYDDMT--KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
            AI  C +      A ++  DM+   +    DE     ++   G  G+     +++   K
Sbjct: 376 AAIMACCRAQQSVAALTLLGDMSVESEHCSADETSYVLVMRAFGREGRWRTVIDLMGSLK 435

Query: 332 NQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            + G+   + SY+ ++ A + A  W KALE+   MK  +++PT  T +  + A     + 
Sbjct: 436 EEAGLVPTVSSYNVVIEALAKAGEWMKALEMLAEMKQERVRPTEFTYSRCMAACEKSGEW 495

Query: 391 PKTMEVLSDMKSL-GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI--PNLVMF 447
            +T+ +L+DMK    L P++  +S  +VAC +   ++  L +L + +E      PNLV++
Sbjct: 496 ERTLLLLADMKEQEDLVPDSYIFSTAMVACSKAGRLDDVLGILQEMREMSATSGPNLVLY 555

Query: 448 KCIIGMCSRRYEKARTLNE 466
              IG C+R  +  R L E
Sbjct: 556 NIAIGSCARARDWPRMLEE 574



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 156/389 (40%), Gaps = 43/389 (11%)

Query: 39  GRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKL-VPNPTLSTFN 96
           G+  E   LL+ M +  L +   + Y+A     C++Q+++        + V +   S   
Sbjct: 349 GQWEEATSLLQRMRQDSLAVVTSREYNAAIMACCRAQQSVAALTLLGDMSVESEHCSADE 408

Query: 97  MLMSVCASSKDSEGAFQVL-----RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
               +   +   EG ++ +      L +EAGL      Y  +I   AK+G+     E+  
Sbjct: 409 TSYVLVMRAFGREGRWRTVIDLMGSLKEEAGLVPTVSSYNVVIEALAKAGEWMKALEMLA 468

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQS 210
           EM    + P   TY   +  C K+G+  +       M+ + ++ PD  +F+  + AC ++
Sbjct: 469 EMKQERVRPTEFTYSRCMAACEKSGEWERTLLLLADMKEQEDLVPDSYIFSTAMVACSKA 528

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D    +L EM        P+ +     + +CA A    R  E    + + +I+    
Sbjct: 529 GRLDDVLGILQEMREMSATSGPNLVLYNIAIGSCARARDWPRMLEEMDRMRREDIEPEES 588

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK----------- 319
            +   ++ C +TG+   A  + D M + G+ P  V    ++  A  AG+           
Sbjct: 589 TFAAPLDTCGRTGNLPMALELLDRMREDGIKPGVVTYGYVVAAACRAGERTSAALLLDEM 648

Query: 320 ------------------------VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
                                    +AA ++L+  + QG+    +  S  + ACSNA N 
Sbjct: 649 EAAGHPPNERTYGVAALACREGNNADAAIDLLRRRQMQGLPPDALILSCAVQACSNAGNM 708

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITAL 384
           Q+ LEL   MKS    P  +  +++I  +
Sbjct: 709 QRGLELITEMKSAGFSPDRAFYHSVIAGI 737



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 150/366 (40%), Gaps = 10/366 (2%)

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           M   A+++D+ GA  +L   Q+ GL     L T  +  C+ +G+  A   +  +M   G+
Sbjct: 236 MKTQAAARDAWGALALLD--QDDGLPRSVMLRTGAMQACSGAGEWRAALSILEDMQAEGL 293

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV---FNALITACGQSGAVDR 215
            PN   Y A ++ CA+ G +  A      +   + + +R V   F+  I ACG  G  + 
Sbjct: 294 RPNGAAYVAAMEACARGGVMDLALELLDRVLMFHPRDERTVTAAFHGAIKACGNGGQWEE 353

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM-IHKYNIKGTPEVYTI 274
           A  +L  M  +   V        A+M  C     V     +  M +   +       Y +
Sbjct: 354 ATSLLQRMRQDSLAVVTSREYNAAIMACCRAQQSVAALTLLGDMSVESEHCSADETSYVL 413

Query: 275 AINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
            +    + G W     +   + ++ G++P     + +I+    AG+   A E+L E K +
Sbjct: 414 VMRAFGREGRWRTVIDLMGSLKEEAGLVPTVSSYNVVIEALAKAGEWMKALEMLAEMKQE 473

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPK 392
            +     +YS  M AC  +  W++ L L   MK  + L P     +  + A     +L  
Sbjct: 474 RVRPTEFTYSRCMAACEKSGEWERTLLLLADMKEQEDLVPDSYIFSTAMVACSKAGRLDD 533

Query: 393 TMEVLSDMKSLGLC--PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            + +L +M+ +     PN + Y+I + +C R  D    L  + + + + + P    F   
Sbjct: 534 VLGILQEMREMSATSGPNLVLYNIAIGSCARARDWPRMLEEMDRMRREDIEPEESTFAAP 593

Query: 451 IGMCSR 456
           +  C R
Sbjct: 594 LDTCGR 599



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/194 (19%), Positives = 84/194 (43%), Gaps = 5/194 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKV--YHARFFNVCKSQ---KAIKEAFRFFKLVPNPT 91
           + GR+ + + +L++M          +  Y+    +  +++   + ++E  R  +    P 
Sbjct: 527 KAGRLDDVLGILQEMREMSATSGPNLVLYNIAIGSCARARDWPRMLEEMDRMRREDIEPE 586

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
            STF   +  C  + +   A ++L  ++E G+K     Y  ++    ++G+  +   +  
Sbjct: 587 ESTFAAPLDTCGRTGNLPMALELLDRMREDGIKPGVVTYGYVVAAACRAGERTSAALLLD 646

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM  AG  PN  TYG     C +      A       + + + PD ++ +  + AC  +G
Sbjct: 647 EMEAAGHPPNERTYGVAALACREGNNADAAIDLLRRRQMQGLPPDALILSCAVQACSNAG 706

Query: 212 AVDRAFDVLAEMNA 225
            + R  +++ EM +
Sbjct: 707 NMQRGLELITEMKS 720


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 10/340 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MF 147
           PT+  FN +M V A S   + A Q+L  +++  ++ D   + TLI   AKSG + A    
Sbjct: 59  PTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL 118

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA- 206
           E+ HE+  AG+ P+  TY  LI  C++   +  A   +  M +   +PD   +NA+++  
Sbjct: 119 ELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVH 178

Query: 207 --CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
             CG++   +  F  L E   +     PD +T  +L+ A A  G V+R   V + + K  
Sbjct: 179 GRCGKAQEAELMFKELVEKGFQ-----PDAVTYNSLLYAFAKEGDVERVERVCEELVKAG 233

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            +     Y   I+   + G  + A  +YD+M   G  PD V  + L+D  G   ++  A 
Sbjct: 234 FRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAG 293

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++L+E  + G+   ++++S+L+ A + +     A   ++ M    +KP       ++   
Sbjct: 294 KVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVF 353

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
              D+  K M +   M   G  P+   Y +LL A  + ++
Sbjct: 354 ARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNE 393



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 144/310 (46%), Gaps = 10/310 (3%)

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P V  + A++   A++G+   A      MR ++++PD V FN LI A  +SG +  A  V
Sbjct: 59  PTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCL--AAGV 116

Query: 220 LAEMNAEVHP--VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
             E+  EV    + PD IT   L+ AC+    +D A  V++ +     +     Y   ++
Sbjct: 117 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 176

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
              + G  + A  ++ ++ +KG  PD V  ++L+      G VE    + +E    G   
Sbjct: 177 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 236

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
             I+Y++++           AL LY+ M++I   P   T   L+ +L   D++ +  +VL
Sbjct: 237 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 296

Query: 398 SDMKSLGLCPNTITYSILLVA---CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
            +M   GL P  +T+S L+ A     R+DD E       +  E GV P+ + +  ++ + 
Sbjct: 297 EEMADAGLKPTLVTFSALICAYAKSGRQDDAE---RTFDRMVESGVKPDRLAYLVMLDVF 353

Query: 455 SRRYEKARTL 464
           +R  E  + +
Sbjct: 354 ARSDETRKLM 363



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 161/361 (44%), Gaps = 2/361 (0%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N L+   A S   E A  +  ++ + G     +    ++      G++D ++ V  E+ 
Sbjct: 625 WNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQ 684

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           +  I+ +  T   +++  AKAG V +    Y  M++    P+  ++  +I+    +    
Sbjct: 685 DLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFR 744

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
               ++AEM  E     PD + +  L+      G  DR  EVY  I +  ++   + Y  
Sbjct: 745 DVELMVAEM--EGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNT 802

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I   S+    E   ++  +M K+G+ P       L+  +G A   E A  + +E + +G
Sbjct: 803 LIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKG 862

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
             +    Y  +M    NA+N  KA  L   MK   ++PT++TM+ L+T+        +  
Sbjct: 863 YRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAE 922

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           +VL+ +KS  L  +T+ YS +L A  R  D  +G+  L + K DGV P+  ++   I   
Sbjct: 923 KVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAA 982

Query: 455 S 455
           S
Sbjct: 983 S 983



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 108/483 (22%), Positives = 186/483 (38%), Gaps = 70/483 (14%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+ +L+           A +VL  + +AGLK     ++ LI   AKSG+ D    
Sbjct: 270 TPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAER 329

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F  MV +G++P+   Y  ++D  A++ +  K    Y  M     KPD  ++  L+ A  
Sbjct: 330 TFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALA 389

Query: 209 QSGAVDRAFDVLAEMNA--EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           +    D    V+ +M A  E++P+    I I A                           
Sbjct: 390 KGNEHDEIEGVIQDMEAVFEMNPLVISSILIKA--------------------------- 422

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                      C SQ        S+      +G  PD   L +++D     GK E    +
Sbjct: 423 ----------ECISQ------GASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSL 466

Query: 327 LQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTMNALIT 382
           L+  +     S  +IS  S+M  C N K    A++ Y   + +K             LIT
Sbjct: 467 LEWIRQHVPNSHNLISECSIMLLCKNGK-IVDAIQEYSRKQMLKRGSFGQDCDLYEYLIT 525

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            L + +  P+  +V  DM+ LG+ P+   Y  ++  C R    E    L+  A    +  
Sbjct: 526 YLEEAELFPEACQVFCDMQFLGIVPSQKIYQSIIYTCCRLGFPETAYQLMDDAARSDISL 585

Query: 443 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ---IENK-WTSL------------A 486
           N++   C + M    Y K + L +   +F  G  Q   ++ + W +L            A
Sbjct: 586 NIL--SCRVAMIE-AYGKLK-LWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHA 641

Query: 487 LMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDG 546
             ++   I  G +PTVE V+ ++  L +    D    +V+ L      + +S +  +++ 
Sbjct: 642 RAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEA 701

Query: 547 FGE 549
           F +
Sbjct: 702 FAK 704



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 150/366 (40%), Gaps = 51/366 (13%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT-YGALI 169
           A QV   +Q  G+    K+Y ++I TC + G  +  +++  +   + I  N+ +   A+I
Sbjct: 536 ACQVFCDMQFLGIVPSQKIYQSIIYTCCRLGFPETAYQLMDDAARSDISLNILSCRVAMI 595

Query: 170 D--GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA---FDVLAEMN 224
           +  G  K  Q A+ F   G+ +   V  DR ++NALI A  +SG  + A   FD++ +  
Sbjct: 596 EAYGKLKLWQQAENF-VKGLKQESGV--DRRIWNALIHAYAESGLYEHARAIFDIMIKKG 652

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
               P+ P   ++  +M+A    G++D    V + +   +IK +     + +   ++ GD
Sbjct: 653 ----PL-PTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGD 707

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
                 +Y+ M   G +P+      +I    H  +      ++ E +  G          
Sbjct: 708 VFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAG---------- 757

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
                                     KP +  +N L+          +T+EV   +   G
Sbjct: 758 -------------------------FKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAG 792

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKAR 462
           L P+  TY+ L+V   R    E G  LL +  + G+ P L  +K ++     ++ +E+A 
Sbjct: 793 LEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQAD 852

Query: 463 TLNEHV 468
            L E +
Sbjct: 853 LLFEEM 858



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 115/283 (40%), Gaps = 33/283 (11%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P +  + +++S+   +K       ++  ++ AG K D  +  TL+     +G  D   EV
Sbjct: 725  PNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEV 784

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            +H ++ AG+EP+  TY  LI   ++  +  + F     M  + + P    +  L+ A G+
Sbjct: 785  YHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGK 844

Query: 210  SGAVDRAFDVLAEM--------------------NAEVHP-------------VDPDHIT 236
            +   ++A  +  EM                    NA  H              ++P   T
Sbjct: 845  AKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIAT 904

Query: 237  IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
            +  LM +   +G  D A +V   +   N++ +   Y+  ++   +  D+    +   +M 
Sbjct: 905  MHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMK 964

Query: 297  KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            + GV PD    ++ I  A    + + A  +L+  ++ G  + I
Sbjct: 965  RDGVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPI 1007


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 183/397 (46%), Gaps = 13/397 (3%)

Query: 33  NRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFF-NVCKSQKAIKEAFRFFKLV 87
           N LIR     G + E + +   M+  G+     +Y   F  N   +   I+ A R F+++
Sbjct: 194 NSLIRSFGALGMVEELLWVWRRMKESGI--EPSLYTFNFLLNGLVNSMFIESAERVFEVM 251

Query: 88  P----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P + ++N ++     + +++ A +    +++  L+ D   Y TLI  C   G  
Sbjct: 252 ECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNF 311

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D+   ++ EM   G+E   H Y  +I G  K G+  +    +  M  K  K +  ++ AL
Sbjct: 312 DSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTAL 371

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I A G++G V+ A ++   M  E    +PD +T G ++     +G++D A E ++     
Sbjct: 372 IDAYGKNGNVNEAINLFERMKGE--GFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDN 429

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            +      Y+  I+   + G  + A   +++M ++G   D    +ALID    +GK+E A
Sbjct: 430 EVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEA 489

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             + +  + +G    + +Y+ L+         ++AL+L++ M    + PT ++  AL   
Sbjct: 490 LVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVG 549

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           LC   ++ +  ++L ++  +G+ P T    ++ V C+
Sbjct: 550 LCLSGKVARACKILDELAPMGVIPETAFEDMINVLCK 586



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 173/400 (43%), Gaps = 7/400 (1%)

Query: 80  AFRFFKLVPNPT-----LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           AFRFF            +  +  L+ V + S D +    +    +E G         +LI
Sbjct: 138 AFRFFWWAGKQKNYIHKIECYVSLIDVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLI 197

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +    G V+ +  V+  M  +GIEP+++T+  L++G   +  +  A   + +M    + 
Sbjct: 198 RSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIG 257

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V +N +I    ++G   +A +   +M  E   ++PD IT   L++AC + G  D   
Sbjct: 258 PDVVSYNTMIKGYCKAGNTKKAMEKFTDM--EKRNLEPDKITYLTLIQACYSEGNFDSCL 315

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            +Y+ + +  ++  P  Y++ I    + G      SV+++M KKG   +    +ALID  
Sbjct: 316 HLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAY 375

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
           G  G V  A  + +  K +G     ++Y  ++     +    +A+E +E  K  ++    
Sbjct: 376 GKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNA 435

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
              ++LI  L    ++ +  +   +M   G   ++  Y+ L+ A  +   +E  L+L  +
Sbjct: 436 MFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKR 495

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
            +++G    +  +  +I    + +     L    L  + G
Sbjct: 496 MEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKG 535


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 152/332 (45%), Gaps = 4/332 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMF 147
           N TLS F+ +  V    K+S  A +     +E  G K D   YTT+I    ++   +A  
Sbjct: 29  NRTLSAFH-INEVLKHQKESGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACS 87

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +  EM   G EP V TY  LI    +A  + +A   +  M+ +   PDRV +  L+   
Sbjct: 88  RLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLH 147

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G  D A D+  +M        PD  T   ++     AG+V  A ++++ + +     
Sbjct: 148 SKAGFHDNAMDMYQKMQQA--GFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAP 205

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +   Y I I+  +++G++  A  +Y+DM   G  PD V  S +++  G  G ++ A  + 
Sbjct: 206 SLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMF 265

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E +  G       Y  ++     A+N ++ALE Y+ M    L P V   N+L+ +    
Sbjct: 266 NEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRM 325

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            Q      V+  MK+ GL P   T++ILL +C
Sbjct: 326 QQFDLAFGVIETMKAWGLVPTLQTHTILLSSC 357



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 122/286 (42%), Gaps = 7/286 (2%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           Y HDV         + R      C  LL++M R+G       Y+ R  +       + EA
Sbjct: 63  YKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYN-RLIHAYGRANFLGEA 121

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            R F  +     +P   T+  L+ + + +   + A  + + +Q+AG + D   Y+ +I  
Sbjct: 122 MRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHC 181

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K+GKV    ++F EMV  G  P++ TY  +ID  AK+G    A   Y  M+     PD
Sbjct: 182 LGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPD 241

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           RV ++ ++   GQ G +  A  +  EM  E     PD    G ++     A   +RA E 
Sbjct: 242 RVTYSIMMEVLGQIGHLQEAELMFNEM--EQAGWVPDAPIYGVMVDMWGKARNAERALEW 299

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
           Y+ +    +    ++    +    +   ++ A  V + M   G++P
Sbjct: 300 YQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVP 345



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/337 (20%), Positives = 137/337 (40%), Gaps = 40/337 (11%)

Query: 187 IMRSKNVKPDRVV-------------FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           I+R  N +PD +V              N ++    +SG   + FD   E     H V   
Sbjct: 11  ILRQLNWRPDTLVALSRVNRTLSAFHINEVLKHQKESGLALKFFDWAKEQEGYKHDV--- 67

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T   ++     A   +    + + + +   +     Y   I+   +      A  ++ 
Sbjct: 68  -CTYTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFY 126

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M ++G  PD V    L+D    AG  + A ++ Q+ +  G      +YS ++     A 
Sbjct: 127 QMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAG 186

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
              +AL+L+E M      P++ T N +I            M++ +DM+  G  P+ +TYS
Sbjct: 187 KVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYS 246

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 473
           I++    +   ++   ++ ++ ++ G +P+  ++  ++ M    + KAR         N+
Sbjct: 247 IMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDM----WGKAR---------NA 293

Query: 474 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 510
            R          AL  Y++ + +G  P V++ + +LG
Sbjct: 294 ER----------ALEWYQKMLDSGLTPNVQISNSLLG 320



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 86/198 (43%), Gaps = 5/198 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G++SE + L E+M  +G       Y+       KS   +  A + +  + +    P
Sbjct: 182 LGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVM-AMKLYNDMQDAGFHP 240

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T++++M V       + A  +   +++AG   D  +Y  ++    K+   +   E +
Sbjct: 241 DRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMWGKARNAERALEWY 300

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M+++G+ PNV    +L+    +  Q   AFG    M++  + P       L+++C  S
Sbjct: 301 QKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVPTLQTHTILLSSCTAS 360

Query: 211 GAVDRAFDVLAEMNAEVH 228
               +  +++   +  V+
Sbjct: 361 AQHHQVVNLMHRSSETVY 378


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 188/391 (48%), Gaps = 7/391 (1%)

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + F +L   P L   N ++     ++ S  A+++   +   G+      Y TLI  C   
Sbjct: 132 YVFRRLWTLPALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNTLINACRYQ 191

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G V    E++ +MV   I+PNV TY ++I    + G +  A   +  M+   ++P++  +
Sbjct: 192 GAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTY 251

Query: 201 NALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           N L++   Q   V+ AF +  E+ N+ +    P+ +    L+     A +   A+++++ 
Sbjct: 252 NVLMSGHCQGDDVNSAFVLYQELLNSGL---IPNAVVFTTLIDGFCKAKRFSEAKDMFRD 308

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + ++ +  T  VY   ++   ++GD + A S+Y +MT+ G+ PDE   S ++      G+
Sbjct: 309 MPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQ 368

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A   L+  +  G+++   +Y++L+       N ++AL     M  + ++P V + ++
Sbjct: 369 IQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSS 428

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI       ++   M + ++M + G+ PN +TY+ L+    +   ++       +  E+G
Sbjct: 429 LIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENG 488

Query: 440 VIPNLVMFKCII-GMC--SRRYEKARTLNEH 467
           + PN +    ++ G+C  +R  +  R + EH
Sbjct: 489 ISPNAITVSVLVDGLCRENRVQDAVRFVMEH 519



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 106/462 (22%), Positives = 192/462 (41%), Gaps = 60/462 (12%)

Query: 38  QGRISEC-IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP---NPTL 92
           + R S C  +L ++M R+G++     Y+    N C+ Q A+ +A   + ++V    +P +
Sbjct: 155 KARRSRCAWELFDEMLRRGMVPSVVTYNT-LINACRYQGAVAKAQEMWDQMVARQIDPNV 213

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+  ++ V         A ++   ++EAG++ +   Y  L++   +   V++ F ++ E
Sbjct: 214 ITYTSMICVLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQE 273

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           ++N+G+ PN   +  LIDG  KA + ++A   +  M    V P   V+N+L+    +SG 
Sbjct: 274 LLNSGLIPNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGD 333

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-------------- 258
              A  +  EM      + PD  T   +++   + GQ+  A    +              
Sbjct: 334 AQEALSLYQEMTR--LGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAY 391

Query: 259 --MIHKYNIKGT-----------------PEV--YTIAINCCSQTGDWEFACSVYDDMTK 297
             +I +Y   G                  P V  Y+  I+  S+ G  + A ++Y +M  
Sbjct: 392 NALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVA 451

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           KG+ P+ V  +ALI      G ++AAF   +E    GIS   I+ S L+         Q 
Sbjct: 452 KGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQD 511

Query: 358 ALELYEHMKSIK-----------------LKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           A+        IK                 L P  +    LI  L    Q  +  ++ S M
Sbjct: 512 AVRFVMEHSGIKYSDIHSFFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYM 571

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           +  G+  ++ TY++L+        V   +ML +   + GV P
Sbjct: 572 RKSGMISDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKP 613


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 190/406 (46%), Gaps = 13/406 (3%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SVCASS 105
           M R+  +    + H     +C++ K + EA  F+  +      PT+ T+ +L+ ++C S 
Sbjct: 250 MPRRNAVSYTNLIHG----LCEAGK-LHEALEFWARMREDGCFPTVRTYTVLVCALCESG 304

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
           ++ E A  +   ++E G + +   YT LI    K G++D   ++ +EMV  G+ P+V  +
Sbjct: 305 RELE-ALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPF 363

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
            ALI    K G +  A G  G+M SK V P+   +N LI    +  ++DRA  +L +M  
Sbjct: 364 NALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVE 423

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
               + PD +T   L+      G VD A  +++++ +         +   + C  + G  
Sbjct: 424 S--KLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRV 481

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
             A  + + + +K V  +E   +ALID    AGK+E A  + +    +      I+++ +
Sbjct: 482 GEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVM 541

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +         Q A+ L E M    +KPT+ T N L+  +       +  E+L+ + S G 
Sbjct: 542 IDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGY 601

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            PN +TY+  + A   +  +E    ++ + K +GV+ +  ++  +I
Sbjct: 602 QPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLI 647



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 189/419 (45%), Gaps = 18/419 (4%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
            Y +     C++   ++ A   F ++P    +S  N++  +C + K  E A +    ++E
Sbjct: 226 TYTSLVLGYCRNDD-VERACGVFCVMPRRNAVSYTNLIHGLCEAGKLHE-ALEFWARMRE 283

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
            G     + YT L+    +SG+      +F EM   G EPNV+TY  LID   K G++ +
Sbjct: 284 DGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDE 343

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A      M  K V P  V FNALI +  + G ++ A  VL  M  E   V P+  T   L
Sbjct: 344 ALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLM--ESKKVCPNVRTYNEL 401

Query: 241 MKACANAGQVDRAREVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTK 297
           +        +DRA  +  KM+     K +P+V  Y   I+   + G  + A  ++  M +
Sbjct: 402 ICGFCRGKSMDRAMALLNKMVES---KLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIR 458

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G  PD+   +A +      G+V  A +IL+  K + +     +Y++L+     A   + 
Sbjct: 459 DGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEH 518

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A  L++ M + +  P   T N +I  L    ++   M ++ DM    + P   TY+IL+ 
Sbjct: 519 AASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVE 578

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTL-----NEHVL 469
              ++ D +    +L++    G  PN+V +   I   CS+ R E+A  +     NE VL
Sbjct: 579 EVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVL 637



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/368 (22%), Positives = 158/368 (42%), Gaps = 25/368 (6%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLV----------QEAGLKADCKLYTTLITTCAKSGKVDA 145
           N ++  C S  D+     +LR +           +   K     Y  L+   ++   VD 
Sbjct: 110 NSMIKSCTSPHDATFLLNLLRRMNTAAAAADHQHQLAFKLSLTSYNRLLMCLSRFSMVDE 169

Query: 146 MFEVFHEMVN---AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           M  ++ EM+      + PN+ T   +++   K G +A A   +  +      PD   + +
Sbjct: 170 MISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTS 229

Query: 203 LITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           L+    ++  V+RA   F V+   NA         ++   L+     AG++  A E +  
Sbjct: 230 LVLGYCRNDDVERACGVFCVMPRRNA---------VSYTNLIHGLCEAGKLHEALEFWAR 280

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +     T   YT+ +    ++G    A S++ +M ++G  P+    + LID+    G+
Sbjct: 281 MREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGR 340

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A ++L E   +G++  ++ +++L+G+       + A+ +   M+S K+ P V T N 
Sbjct: 341 MDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNE 400

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI   C G  + + M +L+ M    L P+ +TY+ L+        V+    L      DG
Sbjct: 401 LICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDG 460

Query: 440 VIPNLVMF 447
             P+   F
Sbjct: 461 FSPDQWTF 468



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 175/416 (42%), Gaps = 27/416 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L R GR+ E   +LE ++ K +   +  Y A     CK+ K    A  F +++     P 
Sbjct: 475 LCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPN 534

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             TFN+++         + A  ++  + +  +K     Y  L+    K    D   E+ +
Sbjct: 535 SITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILN 594

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            ++++G +PNV TY A I      G++ +A      ++++ V  D  ++N LI A G  G
Sbjct: 595 RLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMG 654

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +D AF VL  M       +P ++T   LMK              + +I K+  +G+  V
Sbjct: 655 LLDSAFGVLRRMFGT--GCEPSYLTYSILMK--------------HLVIEKHKKEGSNPV 698

Query: 272 ------YTIAINCCSQTGDWEFACS--VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                   I+++        +F  +  +++ M + G +P+    S LI+     G++  A
Sbjct: 699 GLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRLNVA 758

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           F +    +  GIS   I ++SL+ +C     + +A+ L + M        + +   LI  
Sbjct: 759 FSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICG 818

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           L +     K   V   +   G   + + + +L+    +   V+    LL+  +++G
Sbjct: 819 LFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNG 874



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 110/277 (39%), Gaps = 46/277 (16%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF----RFFKLVPNPTLS 93
           QGR+ E  +++  ++ +G+L +D   +    N       +  AF    R F     P+  
Sbjct: 618 QGRLEEAEEMVIKIKNEGVL-LDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYL 676

Query: 94  TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           T+++LM  +       EG+  V   V    +  D     T I +    G    +FE   +
Sbjct: 677 TYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVD----NTDIWSKIDFGITTVLFE---K 729

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G  PN++TY  LI+G  K G++  AF  Y  MR   + P  ++ N+L+++C + G 
Sbjct: 730 MAECGCVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGM 789

Query: 213 VDRAFDVL-----------------------AEMNAEVHPV----------DPDHITIGA 239
              A  +L                        +MN E              + D +    
Sbjct: 790 FGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKV 849

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
           L+   A  G VD+  E+  ++ K   +  PE Y++ +
Sbjct: 850 LIDGLAKTGYVDQCSELLNLMEKNGCRLHPETYSMLM 886


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 204/450 (45%), Gaps = 21/450 (4%)

Query: 42  SECIDLLEDMERKGLLD---MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           +E +DL+E +  + L     ++KV  A F          ++AF+  K +      P  ST
Sbjct: 395 AELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTST 454

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +  +++    +K  E +F + + ++ AG+  D   YT LI +  K+G ++     F EM 
Sbjct: 455 YTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMR 514

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           + G  PNV TY AL+    K+ Q+ +A   +  M      P+ V ++ALI    ++G + 
Sbjct: 515 SVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQ 574

Query: 215 RAFDVLAEM-----NAEVH---------PVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +A +V  ++     N E            + P+ +T GAL+     A +V  A E+   +
Sbjct: 575 KACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAM 634

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                +    VY   I+   + G  + A  V+  MTK G +P     ++LID     G++
Sbjct: 635 LAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRL 694

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A ++L E  N   +  +++Y++++   S     +KAL L   M+     P V T  AL
Sbjct: 695 DLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTAL 754

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I  L    +   ++++   M S G  PN +TY +L+  C     ++   +LL + K    
Sbjct: 755 IDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMKHTHW 814

Query: 441 IPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
             +L  + C +   S+++  +  L E + S
Sbjct: 815 PKHLQGYHCAVQGFSKKFIASLGLLEEMES 844



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 120/504 (23%), Positives = 209/504 (41%), Gaps = 94/504 (18%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLST 94
           G+  +   +L++M RKG +     Y      +C+++K ++++F  F+ +     NP + T
Sbjct: 431 GKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKK-VEKSFLLFQEMKRAGVNPDVYT 489

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + +L+     +   E A      ++  G   +   YT L+    KS ++    ++FH MV
Sbjct: 490 YTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMV 549

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG--IMRSKNVK--------------PDRV 198
           +A   PN  TY ALIDG  KAG++ KA   Y   I  S NV+              P+ V
Sbjct: 550 DAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVV 609

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY- 257
            + ALI    ++  V  A ++L  M A     +P+ I   AL+      G++D A+EV+ 
Sbjct: 610 TYGALIDGLCKAQKVSDAHELLDAMLAA--GCEPNQIVYDALIDGFCKIGKIDNAQEVFL 667

Query: 258 --------KMIHKY------------------------NIKGTPEV--YTIAINCCSQTG 283
                     +H Y                        N    P V  YT  I+  S+ G
Sbjct: 668 RMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVG 727

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           + E A ++   M +KG  P+ V  +ALID  G  GK +A+ ++ ++  ++G +   ++Y 
Sbjct: 728 EIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYR 787

Query: 344 SLMGACSNA---------------KNWQKALELY------------------EHMKSIKL 370
            L+  C  A                +W K L+ Y                  E M+S + 
Sbjct: 788 VLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHET 847

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN---TITYSILLVACERKDDVEV 427
            P       LI +     +L   +E+  ++  +    N   T  Y+ L+ A      VE 
Sbjct: 848 VPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEE 907

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII 451
              L ++    G++P+L++F  ++
Sbjct: 908 AFTLYTEMTRKGIVPDLIVFVSLV 931



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 156/387 (40%), Gaps = 54/387 (13%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV-------------------- 114
           +A++E  R       P+  T+N L+ V AS+   E  F+V                    
Sbjct: 187 EALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFA 246

Query: 115 ------------LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
                       L ++++     D  L T +I+   ++   +      H M      PNV
Sbjct: 247 QALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNV 306

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY  L+ G  K  Q         +M ++   P+  +FN+L+     +G    A+ +   
Sbjct: 307 VTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNR 366

Query: 223 MNAEVHPVDPDHIT----IGAL--MKACANAGQVDRAREVYK-------MIHKYNIKGTP 269
           M     P  P ++     IG++   +   NA  +D   +VY+       +++K N     
Sbjct: 367 MTTCGSP--PGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFS 424

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
                   C    G +E A  +  +M +KG +PD    + +I F   A KVE +F + QE
Sbjct: 425 R-------CLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQE 477

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G++  + +Y+ L+ +   A   ++A   ++ M+S+   P V T  AL+ A     Q
Sbjct: 478 MKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQ 537

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
           L +  ++   M      PN +TYS L+
Sbjct: 538 LIQAHDIFHRMVDAACYPNAVTYSALI 564



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 144/340 (42%), Gaps = 43/340 (12%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
            Y A    +CK+QK + +A      +      P    ++ L+         + A +V   
Sbjct: 610 TYGALIDGLCKAQK-VSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLR 668

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           + + G       YT+LI    K G++D   +V  EM+N    PNV TY A+IDG +K G+
Sbjct: 669 MTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGE 728

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           + KA     +M  K   P+ V + ALI   G++G  D +  +  +MN++     P+++T 
Sbjct: 729 IEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSK--GCAPNYVTY 786

Query: 238 GALMKACANAGQVDRAREVY---------KMIHKYN--IKGTPE---------------- 270
             L+  C  AG +D A  +          K +  Y+  ++G  +                
Sbjct: 787 RVLINHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHE 846

Query: 271 ------VYTIAINCCSQTGDWEFACSVYDDMTKKGV---IPDEVFLSALIDFAGHAGKVE 321
                 VY + I+  S+ G  E A  ++ ++ +      +      ++LI     A +VE
Sbjct: 847 TVPIAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVE 906

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
            AF +  E   +GI   +I + SL+        W +AL+L
Sbjct: 907 EAFTLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/438 (19%), Positives = 159/438 (36%), Gaps = 76/438 (17%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T + ++ L  +      +  A ++LR + E   +   +L   L+  C + G  D   E  
Sbjct: 133 TGACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLLNVLVRRCCRHGLWDEALEEL 192

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF---------------------------- 182
             + + G  P+  TY AL+   A AGQV   F                            
Sbjct: 193 GRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKV 252

Query: 183 ----GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
                A  ++  ++   D V+   +I+   ++   + A   L  M    +   P+ +T  
Sbjct: 253 GRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRC--NSCIPNVVTYR 310

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+       Q    + +  M+        P ++   ++     GD+ +A  +++ MT  
Sbjct: 311 TLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFNRMTTC 370

Query: 299 GVIP---------------DEVFLSALIDFAGH--------------------------A 317
           G  P               +E+  + L+D                               
Sbjct: 371 GSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGV 430

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           GK E AF+IL+E   +G      +Y+ ++     AK  +K+  L++ MK   + P V T 
Sbjct: 431 GKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTY 490

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LI + C    + +      +M+S+G  PN +TY+ LL A  +   +     +  +  +
Sbjct: 491 TILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVD 550

Query: 438 DGVIPNLVMFKCII-GMC 454
               PN V +  +I G+C
Sbjct: 551 AACYPNAVTYSALIDGLC 568



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 138/340 (40%), Gaps = 39/340 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAF-RFFKLVPNPT 91
           L +  ++S+  +LL+ M   G      VY A     CK  K    +E F R  K    P+
Sbjct: 618 LCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPS 677

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+  L+         + A +VL  +       +   YT +I   +K G+++    +  
Sbjct: 678 VHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLS 737

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G  PNV TY ALIDG  K G+   +   +  M SK   P+ V +  LI  C  +G
Sbjct: 738 LMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAG 797

Query: 212 AVDRAFDVLAEMN-------------------------------AEVHPVDPDHITIGAL 240
            +D A  +L EM                                 E H   P     G L
Sbjct: 798 LLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGML 857

Query: 241 MKACANAGQVDRAREVYKMI----HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           + + + AG+++ A E++K +       N+  T  +Y   I         E A ++Y +MT
Sbjct: 858 IDSFSKAGRLETALELHKELVEVSSSLNMTSTG-MYASLIQALCLASQVEEAFTLYTEMT 916

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
           +KG++PD +   +L+       K + A ++     ++G++
Sbjct: 917 RKGIVPDLIVFVSLVKGLIEVNKWDEALQLCYGRCHEGVN 956


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/434 (24%), Positives = 190/434 (43%), Gaps = 18/434 (4%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           G + N     S  + +Y    R G ++E + +LE M+  GL      Y+A      K   
Sbjct: 227 GGYGNTVFANSALISAY---ARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGV 283

Query: 76  AIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            ++    +F+ +      P   TFN L+S C+ +   E A  +   +   G+  D   Y 
Sbjct: 284 DLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYN 343

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           T I    K G ++   +V  +M    ++PNV TY  LIDG +K  +  +A   Y  M+S 
Sbjct: 344 TFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSL 403

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            ++ DRV +N ++    ++G       V  EM  E   ++ D +T  +L+      G++D
Sbjct: 404 GIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEM--EDSGIEKDTVTYNSLINGYGKQGRLD 461

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
               + + + +  +  +   Y+  I+  S+ G    A +VY D  + G+ PD V  S+ I
Sbjct: 462 IVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFI 521

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA---------LELY 362
           D     G VE A  +L +    GI   +++Y++++ A   +K   +          + +Y
Sbjct: 522 DTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDPEAGEMGIVGVY 581

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
                    P     +A+   +    +L   +E+   M   G+ PN +T+S +L AC R 
Sbjct: 582 NGQIIRAANPVTRGRSAIDVRMRRSQELYFILELFQKMVQQGVRPNVVTFSAILNACSRC 641

Query: 423 DDVEVGLMLLSQAK 436
           ++ E   +LL Q +
Sbjct: 642 NNFEDAALLLEQLR 655



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 183/424 (43%), Gaps = 51/424 (12%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV--FHEMVN 155
           L+S  A S     A  VL  ++ AGL+     Y  +I  C K G VD  F +  F +M+ 
Sbjct: 239 LISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGG-VDLRFTLGYFRQMLR 297

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
             + P+  T+ +L+  C++AG +  A   +  M    +  D   +N  I A  + G ++ 
Sbjct: 298 DRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIEL 357

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  VL +M  E   V P+ +T   L+   +   + D A ++Y+ +    I+     Y   
Sbjct: 358 AMQVLLDM--EAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTV 415

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           +    + G +     V D+M   G+  D V  ++LI+  G  G+++    ++Q+ + +G+
Sbjct: 416 LAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGV 475

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           +  +++YS+L+   S A     A  +Y   K   LKP V   ++ I  L     +   + 
Sbjct: 476 APSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWALS 535

Query: 396 VLSDMKSLGLCPNTITYSILLVACER-----KDDVEVGLM-------------------- 430
           +L+DM  +G+ PN +TY+ ++ A  +     ++D E G M                    
Sbjct: 536 LLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDPEAGEMGIVGVYNGQIIRAANPVTRG 595

Query: 431 -------------------LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 469
                              L  +  + GV PN+V F  I+  CSR   +E A  L E + 
Sbjct: 596 RSAIDVRMRRSQELYFILELFQKMVQQGVRPNVVTFSAILNACSRCNNFEDAALLLEQLR 655

Query: 470 SFNS 473
            F++
Sbjct: 656 LFDN 659



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 150/339 (44%), Gaps = 9/339 (2%)

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMR 189
           + LI+  A+SG V+    V   M  AG+ P   TY A+ID C K G  +    G +  M 
Sbjct: 237 SALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQML 296

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAG 248
              + PDR  FN+L++AC ++G ++ A  +  EM   +H  +  D  T    + A    G
Sbjct: 297 RDRLCPDRKTFNSLLSACSRAGHLEDARALFDEM---IHLGIGRDIYTYNTFIDAICKCG 353

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            ++ A +V   +   N+K     Y+  I+  S+   ++ A  +Y+ M   G+  D V  +
Sbjct: 354 NIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYN 413

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            ++     AGK      +  E ++ GI    ++Y+SL+              L + M+  
Sbjct: 414 TVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRR 473

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            + P+V T + LI              V  D K  GL P+ + +S  +    +   VE  
Sbjct: 474 GVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWA 533

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 467
           L LL+   E G+ PN+V +  II      + K++ L+E 
Sbjct: 534 LSLLNDMTEMGIKPNVVTYNTIIDA----FGKSKVLSEE 568



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 147/325 (45%), Gaps = 3/325 (0%)

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
           KL T  I    K  + D     F   +  G    V    ALI   A++G V +A G    
Sbjct: 199 KLLTAAIGALGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLES 258

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M+   ++P  V +NA+I ACG+ G VD  F +          + PD  T  +L+ AC+ A
Sbjct: 259 MKGAGLRPTTVTYNAVIDACGK-GGVDLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRA 317

Query: 248 GQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           G ++ AR ++ +MIH   I      Y   I+   + G+ E A  V  DM  K V P+ V 
Sbjct: 318 GHLEDARALFDEMIH-LGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVT 376

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            S LID      K + A ++ ++ K+ GI +  + Y++++     A  + +   + + M+
Sbjct: 377 YSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEME 436

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              ++    T N+LI       +L     ++ DM+  G+ P+ +TYS L+    +     
Sbjct: 437 DSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHG 496

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII 451
               +    KE G+ P++V+F   I
Sbjct: 497 DAFNVYLDFKESGLKPDVVLFSSFI 521



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 165/377 (43%), Gaps = 23/377 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +   +++YN  I    + G I   + +L DME K +      Y        K +K   EA
Sbjct: 335 IGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEK-YDEA 393

Query: 81  FRFFKLVPNPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            + ++ + +  +      +N ++++   +        V   ++++G++ D   Y +LI  
Sbjct: 394 LKLYEKMKSLGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLING 453

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G++D +  +  +M   G+ P+V TY  LID  +KAG    AF  Y   +   +KPD
Sbjct: 454 YGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPD 513

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQVDRA 253
            V+F++ I    ++G V+ A  +L +M      + P+ +T   ++ A   +    + D  
Sbjct: 514 VVLFSSFIDTLAKNGLVEWALSLLNDMTE--MGIKPNVVTYNTIIDAFGKSKVLSEEDPE 571

Query: 254 REVYKMIHKYN---IKGTPEVYT--IAINC-CSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
                ++  YN   I+    V     AI+    ++ +  F   ++  M ++GV P+ V  
Sbjct: 572 AGEMGIVGVYNGQIIRAANPVTRGRSAIDVRMRRSQELYFILELFQKMVQQGVRPNVVTF 631

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           SA+++        E A  +L++ +     V  ++Y  LMG     + W +A  L+  +  
Sbjct: 632 SAILNACSRCNNFEDAALLLEQLRLFDNFVYGVAYGLLMGY---QEIWSQAQSLFNQLGR 688

Query: 368 IKLKPTVSTMNALITAL 384
           +    + +  NAL   L
Sbjct: 689 MDSPTSSAFYNALTDVL 705



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 1/158 (0%)

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           +   G +     L+A I   G   + + A          G    + + S+L+ A + +  
Sbjct: 189 LVGNGSVDKGKLLTAAIGALGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYARSGL 248

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEVLSDMKSLGLCPNTITYS 413
             +A+ + E MK   L+PT  T NA+I A   G   L  T+     M    LCP+  T++
Sbjct: 249 VNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFN 308

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            LL AC R   +E    L  +    G+  ++  +   I
Sbjct: 309 SLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFI 346


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 159/349 (45%), Gaps = 5/349 (1%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L T N+LM+    S     A   L  + + G + D   +T+LI       +++    + +
Sbjct: 107 LYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVN 166

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +MV  GI+P+V  Y  +ID   K G V  A   +  M +  ++PD V++ +L+     SG
Sbjct: 167 QMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSG 226

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
               A  +L  M      + PD IT  AL+ A    G+   A E+Y  + + +I      
Sbjct: 227 RWRDADSLLRGMTKR--KIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFT 284

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           YT  IN     G  + A  ++  M  KG  PD V  ++LI+      KV+ A +I  E  
Sbjct: 285 YTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMS 344

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G++   I+Y++L+           A E++ HM S  + P + T N L+  LC   ++ 
Sbjct: 345 QKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVK 404

Query: 392 KTMEVLSDMKSL---GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           K + +  DM+     G+ PN  TY++LL        +E  LM+    ++
Sbjct: 405 KALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRK 453



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 187/412 (45%), Gaps = 50/412 (12%)

Query: 73  SQKAIKEAF--RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           SQ  +  +F  +  KL   P + TF  L++        E A  ++  + E G+K D  +Y
Sbjct: 121 SQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMY 180

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           TT+I +  K+G V+    +F +M N GI P+V  Y +L++G   +G+   A      M  
Sbjct: 181 TTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK 240

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           + +KPD + FNALI A  + G    A ++  EM      + P+  T  +L+      G V
Sbjct: 241 RKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIR--MSIAPNIFTYTSLINGFCMEGCV 298

Query: 251 DRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           D AR+++ ++     KG  P+V  YT  IN   +    + A  ++ +M++KG+  + +  
Sbjct: 299 DEARQMFYLMET---KGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITY 355

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMK 366
           + LI   G  GK   A E+     ++G+   I +Y+ L+   C N K  +KAL ++E M+
Sbjct: 356 TTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGK-VKKALMIFEDMQ 414

Query: 367 SIKLK---PTVSTMNALITALCDGDQLPKTMEVLSDMK---------------------- 401
             ++    P + T N L+  LC   +L K + V  DM+                      
Sbjct: 415 KREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAG 474

Query: 402 -------------SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
                        S G+ PN +TY+ ++    R+       +L  + KEDGV
Sbjct: 475 KVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 142/322 (44%), Gaps = 2/322 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +T L+   AK  K D +  +   +   G+  +++T   L++   ++ Q   A    G M 
Sbjct: 75  FTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMM 134

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               +PD V F +LI        ++ A  ++ +M  E+  + PD +    ++ +    G 
Sbjct: 135 KLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQM-VEM-GIKPDVVMYTTIIDSLCKNGH 192

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           V+ A  ++  +  Y I+    +YT  +N    +G W  A S+   MTK+ + PD +  +A
Sbjct: 193 VNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LID     GK   A E+  E     I+  I +Y+SL+          +A +++  M++  
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P V    +LI   C   ++   M++  +M   GL  NTITY+ L+    +     V  
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQ 372

Query: 430 MLLSQAKEDGVIPNLVMFKCII 451
            + S     GV PN+  +  ++
Sbjct: 373 EVFSHMVSRGVPPNIRTYNVLL 394



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 146/339 (43%), Gaps = 18/339 (5%)

Query: 15  NGKHANYAHDVSEQLHSY-------------NRLIRQGRISECIDLLEDMERKGLLDMDK 61
           NG H NYA  + +Q+ +Y             N L   GR  +   LL  M ++ +     
Sbjct: 190 NG-HVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVI 248

Query: 62  VYHARFFNVCKSQKAI--KEAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            ++A      K  K +  +E +    ++   P + T+  L++        + A Q+  L+
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLM 308

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           +  G   D   YT+LI    K  KVD   ++F+EM   G+  N  TY  LI G  + G+ 
Sbjct: 309 ETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-EVHPVDPDHITI 237
             A   +  M S+ V P+   +N L+     +G V +A  +  +M   E+  V P+  T 
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTY 428

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+      G++++A  V++ + K  +      YTI I    + G  + A +++  +  
Sbjct: 429 NVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPS 488

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
           KGV P+ V  + +I      G    A  + ++ K  G+S
Sbjct: 489 KGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 158/360 (43%), Gaps = 2/360 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L  ++ +M      ++ E    V + ++E G       Y  LI    K GKV    EV  
Sbjct: 434 LDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSK 493

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M + GI+ N+ TY  LI+G  K      AF  +  +    +KPD V++N +I A    G
Sbjct: 494 MMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMG 553

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA  ++ EM  E     P   T   ++   A AG++ RA E++ M+ +     T   
Sbjct: 554 NMDRAIHMVKEMQKER--CRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHT 611

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   +    +    E A  + D+M   GV PDE   + ++      G    AFE   + +
Sbjct: 612 FNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMR 671

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N+G+ + + +Y +L+ AC  +   Q AL +   M + K+       N LI        + 
Sbjct: 672 NEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIW 731

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  M   G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I
Sbjct: 732 EAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLI 791



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 147/327 (44%), Gaps = 2/327 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ML++     KD   AF V   V + GLK D  LY  +I      G +D    +  
Sbjct: 504 MKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVK 563

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM      P   T+  +I G A+AG++ +A   + +MR     P    FNAL+    +  
Sbjct: 564 EMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKR 623

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +++A ++L EM   +  V PD  T   +M   A  G   +A E +  +    ++     
Sbjct: 624 KMEKAVEILDEM--ALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFT 681

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M  + +  +    + LID     G +  A +++Q+  
Sbjct: 682 YEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMN 741

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I +Y+S + AC  A +  +A +  E M++  +KP V T   LI    +     
Sbjct: 742 QEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPE 801

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVA 418
           K +    ++K  GL P+   Y  L+ +
Sbjct: 802 KALSCFEELKLAGLKPDKAVYHCLMTS 828



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 168/359 (46%), Gaps = 3/359 (0%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N++ + C +  + + A  ++R ++E G+ A   +Y T++         +    VF  +  
Sbjct: 404 NIIYAYCQAC-NMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKE 462

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G  P+V TYG LI+   K G+V+KA     +M+S  +K +   ++ LI    +      
Sbjct: 463 CGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTN 522

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           AF V  ++  +   + PD +    ++KA    G +DRA  + K + K   + T   +   
Sbjct: 523 AFAVFEDVIKD--GLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPI 580

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+  ++ G+   A  ++D M + G IP     +AL+       K+E A EIL E    G+
Sbjct: 581 IHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGV 640

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           S    +Y+++M   +   +  KA E +  M++  L+  V T  AL+ A C   ++   + 
Sbjct: 641 SPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALA 700

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           V  +M +  +  NT  Y+IL+    R+ D+     L+ Q  ++GV P++  +   I  C
Sbjct: 701 VTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINAC 759



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 177/404 (43%), Gaps = 33/404 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+   F +++   A   D   A Q    ++  G+     +YT+LI   A    +
Sbjct: 286 FERIKKPSRREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDM 345

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +       +M   GIE ++ TY  ++ G AK G    A   +   + ++   +  ++  +
Sbjct: 346 EEALSCVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNI 405

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  Q+  +DRA  ++ EM  E    P+D                              
Sbjct: 406 IYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGF 465

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  IT G L+      G+V +A EV KM+    IK   + Y++ IN   +  DW  A +
Sbjct: 466 APSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFA 525

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++D+ K G+ PD V  + +I      G ++ A  +++E + +       ++  ++   +
Sbjct: 526 VFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFA 585

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A   ++ALE+++ M+     PTV T NAL+  L +  ++ K +E+L +M   G+ P+  
Sbjct: 586 RAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEH 645

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+ ++       D        ++ + +G+  ++  ++ ++  C
Sbjct: 646 TYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKAC 689



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 135/288 (46%), Gaps = 11/288 (3%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I+     G +   I ++++M+++      + +        ++ + ++ A   F ++
Sbjct: 542 YNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGE-MRRALEIFDMM 600

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 PT+ TFN L+      +  E A ++L  +  AG+  D   YTT++   A  G  
Sbjct: 601 RRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDT 660

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
              FE F +M N G++ +V TY AL+  C K+G++  A      M ++ +  +  V+N L
Sbjct: 661 GKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNIL 720

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    + G +  A D++ +MN E   V PD  T  + + AC  AG + RA +  + +   
Sbjct: 721 IDGWARRGDIWEAADLMQQMNQE--GVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAA 778

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            +K   + YT  I+  +     E A S ++++   G+ PD+     L+
Sbjct: 779 GVKPNVKTYTTLIHGWANASLPEKALSCFEELKLAGLKPDKAVYHCLM 826



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 10/200 (5%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AI 77
           H  +  +H Y  L   G   +  +    M  +GL      Y A     CKS +     A+
Sbjct: 645 HTYTTIMHGYAAL---GDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAV 701

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                  K +P  T   +N+L+   A   D   A  +++ + + G++ D   YT+ I  C
Sbjct: 702 TREMNAQK-IPRNTF-VYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINAC 759

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K+G +    +   EM  AG++PNV TY  LI G A A    KA   +  ++   +KPD+
Sbjct: 760 CKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEELKLAGLKPDK 819

Query: 198 VVFNALITACGQSGAVDRAF 217
            V++ L+T+      V  A+
Sbjct: 820 AVYHCLMTSLLSRATVAEAY 839



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 60/306 (19%), Positives = 128/306 (41%), Gaps = 2/306 (0%)

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           +P+   +G ++   A+ G + +A   +  MR++ + P   V+ +LI A      ++ A  
Sbjct: 291 KPSRREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALS 350

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
            + +MN E   ++   +T   ++   A  G  + A   +K   + +      +Y   I  
Sbjct: 351 CVRKMNEE--GIEMSLVTYSIVVGGFAKFGNAEAADCWFKKAKERHTNLNAYIYGNIIYA 408

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             Q  + + A ++  +M ++G+         ++D        E    + +  K  G +  
Sbjct: 409 YCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPS 468

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           +I+Y  L+   +      KALE+ + MKS+ +K  + T + LI              V  
Sbjct: 469 VITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFE 528

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 458
           D+   GL P+ + Y+ ++ A     +++  + ++ + +++   P    F  II   +R  
Sbjct: 529 DVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAG 588

Query: 459 EKARTL 464
           E  R L
Sbjct: 589 EMRRAL 594



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 36/171 (21%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +      YN LI    R+G I E  DL++ M ++G+                     
Sbjct: 707 AQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGV--------------------- 745

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   ++ C  + D   A + +  ++ AG+K + K YTTLI   
Sbjct: 746 -----------QPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGW 794

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           A +   +     F E+  AG++P+   Y  L+        VA+A+   GI+
Sbjct: 795 ANASLPEKALSCFEELKLAGLKPDKAVYHCLMTSLLSRATVAEAYIYSGIL 845


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 178/371 (47%), Gaps = 12/371 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ T+N+L++    ++  +    V   +   GL  D   Y  LI   +K G+VD   ++
Sbjct: 116 PTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDL 175

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F++M   GI PNV TY +LI+G  K  ++ KA      M    V+P+ + +N LI     
Sbjct: 176 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 235

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT- 268
           SG    +  V  EM++ +  + PD     + M A    G++  AR+++  +    +KG  
Sbjct: 236 SGMWKESVRVFKEMSSSL--LVPDVGNCNSFMTALCKHGRIKEARDIFDSMV---LKGPK 290

Query: 269 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+V  Y   ++  +  G      ++++ M  +GV+PD    + LI+     G ++ +  +
Sbjct: 291 PDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLM 350

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            ++   QG++  II++S+++ A         A+E + HM    + P  +  + LI   C+
Sbjct: 351 FEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCN 410

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITY--SILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
              L K  E++SDM S G+ P  I +  SI+   C ++  V  G  ++      G  PNL
Sbjct: 411 RRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC-KEGRVAEGKDVVDLIIHTGQRPNL 469

Query: 445 VMFKCII-GMC 454
           + F  ++ G C
Sbjct: 470 ITFNSLVDGYC 480



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/437 (21%), Positives = 184/437 (42%), Gaps = 10/437 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + GRI E  D+ + M  KG    D + +    +   +   I      F ++      P
Sbjct: 268 LCKHGRIKEARDIFDSMVLKGP-KPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVP 326

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               FN L++  A     + +  +   + + G+  D   ++T+I+   + G++D   E F
Sbjct: 327 DRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF 386

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQ 209
           + M++ G+ P+   Y  LI G      + KA      M SK + P  +  F ++I    +
Sbjct: 387 NHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCK 446

Query: 210 SGAVDRAFDVLAEMNAEVHPVD-PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G V    DV+   +  +H    P+ IT  +L+      G +  A  +   +    ++  
Sbjct: 447 EGRVAEGKDVV---DLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPD 503

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++   + G  + A +++ DM  K V    V  + ++     A +   A E+  
Sbjct: 504 IYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFH 563

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E    G++V I +Y++++G         +A  L E + S+ +K  + T N +I A+    
Sbjct: 564 EMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVG 623

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  +  E+ + + + GL P  +TY +++    +++  E    L S  ++    P+  +  
Sbjct: 624 RRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILN 683

Query: 449 CIIGMCSRRYEKARTLN 465
            II M   + E A+  N
Sbjct: 684 EIIRMLLNKGEVAKAGN 700



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 131/337 (38%), Gaps = 39/337 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE----AFRFFKLVPNPTL 92
           R GR+ + ++    M   G+     VY       C  +  +K     +    K +P P +
Sbjct: 375 RLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCI 434

Query: 93  STFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             F  +++ +C   + +EG   V+ L+   G + +   + +L+      G +     +  
Sbjct: 435 KFFTSIINNLCKEGRVAEGK-DVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLD 493

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M + G+EP+++TY  L+DG  K G++  A   +  M  K V    V +N ++    Q+ 
Sbjct: 494 SMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQAR 553

Query: 212 AVDRAFDVLAEM-----NAEVHP----------------------------VDPDHITIG 238
               A ++  EM        +H                             V  D +T  
Sbjct: 554 RTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFN 613

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            +++A    G+   A+E++  I  Y +  T   Y + I    +   +E A +++  M K 
Sbjct: 614 IVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKS 673

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
              PD   L+ +I    + G+V  A   L +   +GI
Sbjct: 674 SCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGI 710



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 46/315 (14%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN-CC----------- 279
           PD  +  AL+   +  G+VD+A +++  + +  I      Y+  IN  C           
Sbjct: 151 PDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERV 210

Query: 280 -----------------------SQTGDWEFACSVYDDMTKKGVIPD----EVFLSALID 312
                                  S +G W+ +  V+ +M+   ++PD      F++AL  
Sbjct: 211 LRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCK 270

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G+++ A +I      +G    +ISY +L+   + A        L+  M    + P
Sbjct: 271 H----GRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVP 326

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
                N LI A      + K++ +  DM   G+ P+ IT+S ++ A  R   ++  +   
Sbjct: 327 DRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF 386

Query: 433 SQAKEDGVIPNLVMFKCII-GMCSRR-YEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 490
           +   + GV P+  ++ C+I G C+RR   KA+ L   +LS     P I+  +TS+   + 
Sbjct: 387 NHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIK-FFTSIINNLC 445

Query: 491 REAIVAGTIPTVEVV 505
           +E  VA     V+++
Sbjct: 446 KEGRVAEGKDVVDLI 460



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 127/324 (39%), Gaps = 43/324 (13%)

Query: 46  DLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMS 100
           +L+ DM  KG+     K + +   N+CK  + + E      L+      P L TFN L+ 
Sbjct: 419 ELISDMLSKGIPPPCIKFFTSIINNLCKEGR-VAEGKDVVDLIIHTGQRPNLITFNSLVD 477

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---------------- 144
                 + + A  +L  ++  G++ D   Y TL+    K G++D                
Sbjct: 478 GYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTL 537

Query: 145 ----------AMF---------EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
                      +F         E+FHEM+ +G+  ++HTY  ++ G  +     +A    
Sbjct: 538 TSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLL 597

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             + S NVK D + FN +I A  + G    A ++ A ++   + + P  +T   ++    
Sbjct: 598 EKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAIST--YGLVPTILTYRVMITNLI 655

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
                + A  ++  + K +      +    I      G+   A +    + KKG++P+  
Sbjct: 656 KEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEAT 715

Query: 306 FLSALIDFAGHAGKVEAAFEILQE 329
             S LI      GK     ++L E
Sbjct: 716 TTSLLIYLFSVNGKYREYIKLLPE 739


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 132/559 (23%), Positives = 242/559 (43%), Gaps = 33/559 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N   + G++ E    ++ ME  G+      YH+   N   S   ++ A    K +    +
Sbjct: 234 NAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHS-LINGYVSLGDVEAAKGVLKFMSEKGV 292

Query: 93  S----TFNMLM-SVCASSKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAM 146
           S    T+ +L+   C   K  E A +VLR +QE A L  D + Y  LI    ++GK+D  
Sbjct: 293 SRNVVTYTLLIKGYCKQCKMDE-AEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDA 351

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +  EM+  G++ N+    +LI+G  K G++ +A G    M   N+KPD   +N L+  
Sbjct: 352 VRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDG 411

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G    AF++  +M  E   ++P  +T   L+K     G  D A +++ ++ K  + 
Sbjct: 412 YCREGHTSEAFNLCDKMLQE--GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVA 469

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+  ++   +  ++E A +++ D+  +G     +  + +I      GK+  A EI
Sbjct: 470 PDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEI 529

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             + K+ G S   I+Y +L+     A N  +A ++   M+   + P++   N+LI+ L  
Sbjct: 530 FDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFK 589

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L +  ++L++M   GL PN +TY  L+    ++  ++       +  E+G+  N+++
Sbjct: 590 SRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIII 649

Query: 447 FKCIIGMCSR--RYEKARTL------------NEHVLSFNSGRPQIENKWTSLALMVYRE 492
              ++    R  R ++A  L            +E  L  +     I+    SL      E
Sbjct: 650 CSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLD-----E 704

Query: 493 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GE 549
           +     +P   V +  +  L      D   R    L +          C+LI G+   G 
Sbjct: 705 SCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGN 764

Query: 550 YDPRAFSLLEEAASFGIVP 568
            D  AF L +E    G+VP
Sbjct: 765 VD-EAFRLRDEMLRRGLVP 782



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 188/411 (45%), Gaps = 22/411 (5%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA 103
           L +D+  +G       ++     +CK  K ++    F K+     +P   T+  L+    
Sbjct: 494 LWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYC 553

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
            + +   AF+V   ++   +    ++Y +LI+   KS ++    ++  EM   G+ PN+ 
Sbjct: 554 KASNVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIV 613

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           TYGALIDG  K G + KAF +Y  M    +  + ++ + +++   + G +D A  ++ +M
Sbjct: 614 TYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKM 673

Query: 224 NAEVHPVDPDH-------ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
               H   PDH       I   A+ K    A  +D + + + + +  NI     VY IAI
Sbjct: 674 VD--HGFFPDHECFLKSDIRYAAIQKI---ADSLDESCKTFLLPN--NI-----VYNIAI 721

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
               +TG  + A   +  ++ KG +PD      LI     AG V+ AF +  E   +G+ 
Sbjct: 722 AGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLV 781

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             I++Y++L+     ++N  +A  L+  +    L P V T N LI   C    +    ++
Sbjct: 782 PNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 841

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
              M   G+ P+ +TYS L+    +  D+E  + LL+Q  + GV   L+ +
Sbjct: 842 KDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEY 892



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 158/397 (39%), Gaps = 36/397 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+L + N L++    + ++  A  V + +   G+  D  + + ++    K GKVD     
Sbjct: 189 PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGF 248

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M N G+EPN+ TY +LI+G    G V  A G    M  K V  + V +  LI    +
Sbjct: 249 VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 308

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A  VL  M  E   V PD    G L+      G++D A  +   + +  +K   
Sbjct: 309 QCKMDEAEKVLRGMQEEAALV-PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNL 367

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +    IN   + G+   A  V   M    + PD    + L+D     G    AF +  +
Sbjct: 368 FICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDK 427

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP----------------- 372
              +GI   +++Y++L+        +  AL+++  M    + P                 
Sbjct: 428 MLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMEN 487

Query: 373 ------------------TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
                             +  T N +I+ LC   ++ +  E+   MK LG  P+ ITY  
Sbjct: 488 FEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRT 547

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L+    +  +V     +    + + + P++ M+  +I
Sbjct: 548 LIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLI 584



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 179/417 (42%), Gaps = 15/417 (3%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQK-------AIKEAFRFFKLVPNPTLSTFNMLM 99
           L+  + R  + D  + Y  +  ++CK +         +   +R F   P    + F+M++
Sbjct: 108 LVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSP----TVFDMIL 163

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
            V      ++ A  V   + + G     +   +L+    K+G+      V+ +M+  GI 
Sbjct: 164 KVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIV 223

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P+V     +++   K G+V +A G    M +  V+P+ V +++LI      G V+ A  V
Sbjct: 224 PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGV 283

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINC 278
           L  M+ +   V  + +T   L+K      ++D A +V + M  +  +      Y + I+ 
Sbjct: 284 LKFMSEK--GVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 341

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             +TG  + A  + D+M + G+  +    ++LI+     G++  A  ++    +  +   
Sbjct: 342 YCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPD 401

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
             SY++L+       +  +A  L + M    ++PTV T N L+  LC        +++  
Sbjct: 402 SYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWH 461

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            M   G+ P+ + YS LL    + ++ E    L       G   + + F  +I G+C
Sbjct: 462 LMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLC 518



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 139/341 (40%), Gaps = 14/341 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  +  YN LI    +  R+ E  DLL +M  +GL      Y A     CK     K  
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 632

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLKADCKLYTTLITT 136
             +F++  N  LS   ++ S   S     G      L+ +     G   D   +   + +
Sbjct: 633 SSYFEMTEN-GLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPD---HECFLKS 688

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             +   +  + +   E     + PN   Y   I G  K G+V  A   + ++  K   PD
Sbjct: 689 DIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPD 748

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
              +  LI     +G VD AF +  EM      + P+ +T  AL+     +  VDRA+ +
Sbjct: 749 NFTYCTLIHGYSAAGNVDEAFRLRDEMLR--RGLVPNIVTYNALINGLCKSENVDRAQRL 806

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  +H+  +      Y   I+   + G+ + A  + D M ++G+ P  V  SALI+    
Sbjct: 807 FHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCK 866

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G +E + ++L +    G+   +I Y +L+       N+ +
Sbjct: 867 HGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGGFKTSNYNE 907


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 166/345 (48%), Gaps = 17/345 (4%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           ++  A Q+LR ++   +  D  +Y+T+I    K   V+  +E++ EM+   I P V T  
Sbjct: 191 ETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLN 250

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           +LI G    GQ  +AFG    M  KN+ PD   FN L+ A  + G +  A   +A M  E
Sbjct: 251 SLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKE 310

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              V PD +T  +LM       +V++A+                VY+I IN   +    +
Sbjct: 311 --GVMPDVVTYSSLMDGYCLVNEVNKAK---------------HVYSIVINGFCKIKMVD 353

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A S++ +M  + + PD V  ++LID    +G++  A+E++ E ++ G    II+Y+SL+
Sbjct: 354 KALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLI 413

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A     +  KA+ L + +K   ++  + T N LI  LC   +L     +  D+   G  
Sbjct: 414 DALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYN 473

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               TY+I++     +  +     LLS+ +++G +P+ V  + II
Sbjct: 474 LTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETII 518



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 182/396 (45%), Gaps = 30/396 (7%)

Query: 83  FFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F++L  N   P + + ++L++          AF +   + + G   +    TTL+     
Sbjct: 94  FYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCL 153

Query: 140 SGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           + KV      FH+ V A G   N  +YG LI+G  K G+   A      +  K V  D V
Sbjct: 154 NHKVKEALH-FHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVV 212

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           +++ +I    +   V+ A+++ +EM  +   + P  +T+ +L+      GQ    +E + 
Sbjct: 213 MYSTIIDGLCKDKLVNDAYELYSEMITK--RISPTVVTLNSLIYGYCIVGQF---KEAFG 267

Query: 259 MIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           ++ +  +K   P+VYT  I ++   + G  + A S    M K+GV+PD V  S+L+D   
Sbjct: 268 LLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYC 327

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
              +V  A  +               YS ++      K   KAL L+  M+  ++ P   
Sbjct: 328 LVNEVNKAKHV---------------YSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTV 372

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N+LI  LC   ++    E++ +M+  G   + ITY+ L+ A  +   V+  + L+ + 
Sbjct: 373 TYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKI 432

Query: 436 KEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVL 469
           K+ G+  ++  +  +I G+C + R + A+ + + +L
Sbjct: 433 KDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLL 468



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 4/170 (2%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P   T+N L+  +C S + S  A++++  ++++G  AD   Y +LI    K+  VD    
Sbjct: 369 PDTVTYNSLIDGLCKSGRISY-AWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIA 427

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  ++ + GI+ +++TY  LIDG  K G++  A   +  +  K        +  +I    
Sbjct: 428 LVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLC 487

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
             G ++ A  +L++M  E +   PD +T   +++A     + +RA ++ +
Sbjct: 488 LEGLLNEAETLLSKM--EDNGCVPDAVTCETIIRALFENDKNERAEKLLR 535



 Score = 46.2 bits (108), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 83/195 (42%), Gaps = 13/195 (6%)

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GA 348
           S++  +   G+ P+ V LS LI+   H G++  AF I  +    G     I+ ++L+ G 
Sbjct: 92  SLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGF 151

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
           C N K  ++AL  ++H+ ++       +   LI  LC   +    +++L  ++   +  +
Sbjct: 152 CLNHK-VKEALHFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTD 210

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSRRYEKAR 462
            + YS ++    +   V     L S+     + P +V         CI+G     +   R
Sbjct: 211 VVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLR 270

Query: 463 -----TLNEHVLSFN 472
                 +N  V +FN
Sbjct: 271 EMVLKNINPDVYTFN 285


>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
 gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 198/432 (45%), Gaps = 13/432 (3%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
            +Y+ LI    R G+    ++L++DM R  +      Y+    N C S    +EA    K
Sbjct: 179 ETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYN-NLINACGSSGNWREALEVCK 237

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + +    P L T N+++S   S +    A     L++ A ++ D   +  +I   +K G
Sbjct: 238 KMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLG 297

Query: 142 KVDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +     ++F+ M     E  P+V T+ +++   +  G++      +  M ++ +KP+ V 
Sbjct: 298 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVS 357

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +NAL+ A    G    A  VL ++    + + PD ++   L+ +   + Q  +A+EV+ M
Sbjct: 358 YNALMGAYAVHGMSGTALSVLGDIKQ--NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLM 415

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + K   K     Y   I+     G    A  ++  M + G+ P+ V +  L+     + K
Sbjct: 416 MRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKK 475

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
                 +L  A+++GI++   +Y+S +G+  NA   +KA+ LY+ M+  K+K    T   
Sbjct: 476 KVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTI 535

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI+  C   + P+ +  L +M+ L +      YS +L A  ++  V     + +Q K  G
Sbjct: 536 LISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAG 595

Query: 440 VIPNLVMFKCII 451
             P+++ +  ++
Sbjct: 596 CEPDVIAYTSML 607



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 160/359 (44%), Gaps = 15/359 (4%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  +I   A+   VD    +F EM     +P+  TY ALI+   +AGQ   A      M
Sbjct: 145 IYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDM 204

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               + P R  +N LI ACG SG    A +V  +M    + V PD +T   ++ A  +  
Sbjct: 205 LRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTD--NGVGPDLVTHNIVLSAYKSGR 262

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV--IPDEVF 306
           Q  +A   ++++    ++     + I I C S+ G    A  +++ M +K     PD V 
Sbjct: 263 QYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVT 322

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            ++++      G++E    + +    +G+   I+SY++LMGA +       AL +   +K
Sbjct: 323 FTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIK 382

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              + P V +   L+ +     Q  K  EV   M+     PN +TY+ L+ A      + 
Sbjct: 383 QNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLA 442

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK-----------ARTLNEHVLSFNSG 474
             + +  Q ++DG+ PN+V    ++  CSR  +K           +R +N +  ++NS 
Sbjct: 443 EAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSA 501



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 184/443 (41%), Gaps = 11/443 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + SYN L+      G     + +L D+++ G++  D V +    N     +  
Sbjct: 348 AEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIP-DVVSYTCLLNSYGRSRQP 406

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A   F ++      P + T+N L+    S+     A ++ R +++ G+K +     TL
Sbjct: 407 GKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTL 466

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +  C++S K   +  V     + GI  N   Y + I     A ++ KA   Y  MR K V
Sbjct: 467 LAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKV 526

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           K D V F  LI+   +      A   L EM     P+  +     +++ A +  GQV  A
Sbjct: 527 KADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKE--VYSSVLCAYSKQGQVTEA 584

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             ++  +     +     YT  ++  + +  W  AC ++ +M   G+ PD +  SAL+  
Sbjct: 585 ESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRA 644

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G+    F ++   + + I      +  +  AC+  + W++A++L + M       +
Sbjct: 645 FNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLS 704

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           +   N ++       ++   M++   + + G+  N  TY+ILL       +    + +L 
Sbjct: 705 IGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLE 764

Query: 434 QAKEDGVIPNLVMFKCIIGMCSR 456
                G+ P+  M++ II    R
Sbjct: 765 WMSGAGIQPSNQMYRDIISFGER 787



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 123/303 (40%), Gaps = 15/303 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           I    + + I L + M +K +      +       C+  K   EA  + K + + ++   
Sbjct: 506 INAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSK-YPEAISYLKEMEDLSIPLT 564

Query: 96  NMLMS--VCASSKDSE--GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             + S  +CA SK  +   A  +   ++ AG + D   YT+++     S K     E+F 
Sbjct: 565 KEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFL 624

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   GIEP+     AL+    K GQ +  F    +MR K +     VF  + +AC    
Sbjct: 625 EMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQ 684

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIG---ALMKACANAGQVDRAREVYKMIHKYNIKGT 268
              RA D++  M+    P  P  ++IG    ++     +G+V+   +++  I    +   
Sbjct: 685 EWKRAIDLIQMMD----PYLPS-LSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGIN 739

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            + Y I +      G+W     V + M+  G+ P       +I F   +  +E  FE L 
Sbjct: 740 LKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIE--FEPLI 797

Query: 329 EAK 331
             K
Sbjct: 798 RQK 800



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +  LH+YN   + G+  E   L  +ME  G+ + D +  +               F    
Sbjct: 604 TSMLHAYNASEKWGKACE---LFLEMEANGI-EPDSIACSALMRAFNKGGQPSNVFVLMD 659

Query: 86  LVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           L+       T + F  + S C + ++ + A  +++++          L   ++    KSG
Sbjct: 660 LMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSG 719

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KV+AM ++F++++ +G+  N+ TY  L++     G   K       M    ++P   ++ 
Sbjct: 720 KVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYR 779

Query: 202 ALITACGQSGAVD 214
            +I+   +S  ++
Sbjct: 780 DIISFGERSAGIE 792


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 197/420 (46%), Gaps = 10/420 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N   + G++ E    ++ ME  G+      YH+   N   S   ++ A    K +    +
Sbjct: 200 NAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHS-LINGYVSLGDVEAAKGVLKFMSEKGV 258

Query: 93  S----TFNMLM-SVCASSKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAM 146
           S    T+ +L+   C   K  E A +VLR +QE A L  D + Y  LI    ++GK+D  
Sbjct: 259 SRNVVTYTLLIKGYCKQCKMDE-AEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDA 317

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +  EM+  G++ N+    +LI+G  K G++ +A G    M   N+KPD   +N L+  
Sbjct: 318 VRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDG 377

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G    AF++  +M  E   ++P  +T   L+K     G  D A +++ ++ K  + 
Sbjct: 378 YCREGHTSEAFNLCDKMLQE--GIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVA 435

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+  ++   +  ++E A +++ D+  +G     +  + +I      GK+  A EI
Sbjct: 436 PDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEI 495

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             + K+ G S   I+Y +L+     A N  +A ++   M+   + P++   N+LI+ L  
Sbjct: 496 FDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFK 555

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L +  ++L++M   GL PN +TY  L+    ++  ++       +  E+G+  N+++
Sbjct: 556 SRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIII 615



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 192/455 (42%), Gaps = 43/455 (9%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +SYN L+    R+G  SE  +L + M ++G+      Y+     +C+   A  +A + + 
Sbjct: 369 YSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVG-AFDDALQIWH 427

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           L+      P    ++ L+      ++ EGA  + + +   G       + T+I+   K G
Sbjct: 428 LMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMG 487

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+    E+F +M + G  P+  TY  LIDG  KA  V +AF   G M  + + P   ++N
Sbjct: 488 KMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYN 547

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +LI+   +S  +    D+L EM   +  + P+ +T GAL+      G +D+A   Y  + 
Sbjct: 548 SLISGLFKSRRLVEVTDLLTEMG--IRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMT 605

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAG----- 315
           +  +     + +  ++   + G  + A  +   M   G  PD E FL + I +A      
Sbjct: 606 ENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIA 665

Query: 316 --------------------------HAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
                                       GKV+ A         +G      +Y +L+   
Sbjct: 666 DSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGY 725

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
           S A N  +A  L + M    L P + T NALI  LC  + + +   +   +   GL PN 
Sbjct: 726 SAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNV 785

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           +TY+ L+    +  +++    L  +  E+G+ P++
Sbjct: 786 VTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSI 820



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 161/397 (40%), Gaps = 36/397 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+L + N L++    + ++  A  V + +   G+  D  + + ++    K GKVD     
Sbjct: 155 PSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGF 214

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M N G+EPN+ TY +LI+G    G V  A G    M  K V  + V +  LI    +
Sbjct: 215 VKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCK 274

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A  VL  M  E   V PD    G L+      G++D A  +   + +  +K   
Sbjct: 275 QCKMDEAEKVLRGMQEEAALV-PDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNL 333

Query: 270 EVYTIAINCCSQTG-------------DWEFACSVY----------------------DD 294
            +    IN   + G             DW      Y                      D 
Sbjct: 334 FICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDK 393

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M ++G+ P  +  + L+      G  + A +I      +G++   + YS+L+      +N
Sbjct: 394 MLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMEN 453

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           ++ A  L++ + +     +  T N +I+ LC   ++ +  E+   MK LG  P+ ITY  
Sbjct: 454 FEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRT 513

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L+    +  +V     +    + + + P++ M+  +I
Sbjct: 514 LIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLI 550



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 179/417 (42%), Gaps = 15/417 (3%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQK-------AIKEAFRFFKLVPNPTLSTFNMLM 99
           L+  + R  + D  + Y  +  ++CK +         +   +R F   P    + F+M++
Sbjct: 74  LVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSP----TVFDMIL 129

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
            V      ++ A  V   + + G     +   +L+    K+G+      V+ +M+  GI 
Sbjct: 130 KVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIV 189

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P+V     +++   K G+V +A G    M +  V+P+ V +++LI      G V+ A  V
Sbjct: 190 PDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGV 249

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINC 278
           L  M+ +   V  + +T   L+K      ++D A +V + M  +  +      Y + I+ 
Sbjct: 250 LKFMSEK--GVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDG 307

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             +TG  + A  + D+M + G+  +    ++LI+     G++  A  ++    +  +   
Sbjct: 308 YCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPD 367

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
             SY++L+       +  +A  L + M    ++PTV T N L+  LC        +++  
Sbjct: 368 SYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWH 427

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            M   G+ P+ + YS LL    + ++ E    L       G   + + F  +I G+C
Sbjct: 428 LMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLC 484


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 143/623 (22%), Positives = 252/623 (40%), Gaps = 85/623 (13%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY-- 63
           ++++QF Y   K   Y H+++  +   NRL+R                      D+V+  
Sbjct: 89  ESVIQFFYWISKRPFYKHNMNCFISMLNRLVR----------------------DRVFAP 126

Query: 64  --HARFFNV--CKSQKAIKEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVL 115
             H R   +  C++++ I+    F   +       +L + N L+   A  +  EGA  + 
Sbjct: 127 ADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLY 186

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           + +  +G++     + TLI   +K GKV     +  ++    + P+V TY +LI G  + 
Sbjct: 187 KQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRN 246

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
             +  AFG +  M  +   P+ V ++ LI      G VD A D+L EM  +   ++P   
Sbjct: 247 RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEK--GIEPTVY 304

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T    + A       + A E+   + K   +   + YT  I+  S+ G  E A  +Y  M
Sbjct: 305 TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM 364

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            K+G++P+ V  +ALI+     G+   A +I    +  G      +Y+ ++       + 
Sbjct: 365 LKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDI 424

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITAL--------------------CDGDQ------ 389
           +KA+ L+E M  +   PTV T N LI                       C+ D+      
Sbjct: 425 EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNEL 484

Query: 390 ---------LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
                    L        +M   GL PN ++Y+ L+    +   V++ L LL + +E G 
Sbjct: 485 VSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGC 544

Query: 441 IPNLVMFKCIIGMCSR--RYEKA---------RTLNEHVLSFNSGRPQI-ENKWTSLALM 488
            PN+  +  +I   S+  R+ +A         + L  +V+++ +    +  N  T  A  
Sbjct: 545 NPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFK 604

Query: 489 VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF- 547
           ++ +      +P +   S ++  L     AD  E L++ +     A       SLIDGF 
Sbjct: 605 IFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFV 664

Query: 548 --GEYDPRAFSLLEEAASFGIVP 568
             G  D  AF LL      G  P
Sbjct: 665 VLGRID-HAFLLLRRMVDMGCKP 686


>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 683

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 198/432 (45%), Gaps = 13/432 (3%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
            +Y+ LI    R G+    ++L++DM R  +      Y+    N C S    +EA    K
Sbjct: 47  ETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYN-NLINACGSSGNWREALEVCK 105

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + +    P L T N+++S   S +    A     L++ A ++ D   +  +I   +K G
Sbjct: 106 KMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLG 165

Query: 142 KVDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +     ++F+ M     E  P+V T+ +++   +  G++      +  M ++ +KP+ V 
Sbjct: 166 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVS 225

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +NAL+ A    G    A  VL ++    + + PD ++   L+ +   + Q  +A+EV+ M
Sbjct: 226 YNALMGAYAVHGMSGTALSVLGDIKQ--NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLM 283

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + K   K     Y   I+     G    A  ++  M + G+ P+ V +  L+     + K
Sbjct: 284 MRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKK 343

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
                 +L  A+++GI++   +Y+S +G+  NA   +KA+ LY+ M+  K+K    T   
Sbjct: 344 KVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTI 403

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI+  C   + P+ +  L +M+ L +      YS +L A  ++  V     + +Q K  G
Sbjct: 404 LISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAG 463

Query: 440 VIPNLVMFKCII 451
             P+++ +  ++
Sbjct: 464 CEPDVIAYTSML 475



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 173/386 (44%), Gaps = 10/386 (2%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +NM++ + A     + A  +   +Q+   K D + Y  LI    ++G+      +  +M+
Sbjct: 14  YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDML 73

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            A I P+  TY  LI+ C  +G   +A      M    V PD V  N +++A        
Sbjct: 74  RAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYS 133

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--Y 272
           +A      M      V PD  T   ++   +  GQ  +A +++  + +   +  P+V  +
Sbjct: 134 KALSYFELMKGA--KVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTF 191

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  ++  S  G+ E   +V++ M  +G+ P+ V  +AL+      G    A  +L + K 
Sbjct: 192 TSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ 251

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            GI   ++SY+ L+ +   ++   KA E++  M+  + KP V T NALI A      L +
Sbjct: 252 NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAE 311

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +E+   M+  G+ PN ++   LL AC R K  V V   +LS A+  G+  N   +   I
Sbjct: 312 AVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVD-TVLSAAQSRGINLNTAAYNSAI 370

Query: 452 GMCSRRYEKARTLNEHVLSFNSGRPQ 477
           G     Y  A  L + +  + S R +
Sbjct: 371 G----SYINAAELEKAIALYQSMRKK 392



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 160/359 (44%), Gaps = 15/359 (4%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  +I   A+   VD    +F EM     +P+  TY ALI+   +AGQ   A      M
Sbjct: 13  IYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDM 72

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               + P R  +N LI ACG SG    A +V  +M    + V PD +T   ++ A  +  
Sbjct: 73  LRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTD--NGVGPDLVTHNIVLSAYKSGR 130

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV--IPDEVF 306
           Q  +A   ++++    ++     + I I C S+ G    A  +++ M +K     PD V 
Sbjct: 131 QYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVT 190

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            ++++      G++E    + +    +G+   I+SY++LMGA +       AL +   +K
Sbjct: 191 FTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIK 250

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              + P V +   L+ +     Q  K  EV   M+     PN +TY+ L+ A      + 
Sbjct: 251 QNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLA 310

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK-----------ARTLNEHVLSFNSG 474
             + +  Q ++DG+ PN+V    ++  CSR  +K           +R +N +  ++NS 
Sbjct: 311 EAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSA 369



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 184/443 (41%), Gaps = 11/443 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + SYN L+      G     + +L D+++ G++  D V +    N     +  
Sbjct: 216 AEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIP-DVVSYTCLLNSYGRSRQP 274

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A   F ++      P + T+N L+    S+     A ++ R +++ G+K +     TL
Sbjct: 275 GKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTL 334

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +  C++S K   +  V     + GI  N   Y + I     A ++ KA   Y  MR K V
Sbjct: 335 LAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKV 394

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           K D V F  LI+   +      A   L EM     P+  +     +++ A +  GQV  A
Sbjct: 395 KADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKE--VYSSVLCAYSKQGQVTEA 452

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             ++  +     +     YT  ++  + +  W  AC ++ +M   G+ PD +  SAL+  
Sbjct: 453 ESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRA 512

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G+    F ++   + + I      +  +  AC+  + W++A++L + M       +
Sbjct: 513 FNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLS 572

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           +   N ++       ++   M++   + + G+  N  TY+ILL       +    + +L 
Sbjct: 573 IGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLE 632

Query: 434 QAKEDGVIPNLVMFKCIIGMCSR 456
                G+ P+  M++ II    R
Sbjct: 633 WMSGAGIQPSNQMYRDIISFGER 655



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 92/192 (47%), Gaps = 2/192 (1%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           ++Y + I   ++    + A  ++ +M K    PD     ALI+  G AG+   A  ++ +
Sbjct: 12  DIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDD 71

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                I+    +Y++L+ AC ++ NW++ALE+ + M    + P + T N +++A   G Q
Sbjct: 72  MLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQ 131

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV--IPNLVMF 447
             K +     MK   + P+T T++I++    +       L L +  +E      P++V F
Sbjct: 132 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTF 191

Query: 448 KCIIGMCSRRYE 459
             I+ + S + E
Sbjct: 192 TSIMHLYSVKGE 203



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 123/303 (40%), Gaps = 15/303 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           I    + + I L + M +K +      +       C+  K   EA  + K + + ++   
Sbjct: 374 INAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSK-YPEAISYLKEMEDLSIPLT 432

Query: 96  NMLMS--VCASSKDSE--GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             + S  +CA SK  +   A  +   ++ AG + D   YT+++     S K     E+F 
Sbjct: 433 KEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFL 492

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   GIEP+     AL+    K GQ +  F    +MR K +     VF  + +AC    
Sbjct: 493 EMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQ 552

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIG---ALMKACANAGQVDRAREVYKMIHKYNIKGT 268
              RA D++  M+    P  P  ++IG    ++     +G+V+   +++  I    +   
Sbjct: 553 EWKRAIDLIQMMD----PYLPS-LSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGIN 607

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            + Y I +      G+W     V + M+  G+ P       +I F   +  +E  FE L 
Sbjct: 608 LKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIE--FEPLI 665

Query: 329 EAK 331
             K
Sbjct: 666 RQK 668



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 82/193 (42%), Gaps = 8/193 (4%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +  LH+YN   + G+  E   L  +ME  G+ + D +  +               F    
Sbjct: 472 TSMLHAYNASEKWGKACE---LFLEMEANGI-EPDSIACSALMRAFNKGGQPSNVFVLMD 527

Query: 86  LVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           L+       T + F  + S C + ++ + A  +++++          L   ++    KSG
Sbjct: 528 LMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSG 587

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KV+AM ++F++++ +G+  N+ TY  L++     G   K       M    ++P   ++ 
Sbjct: 588 KVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYR 647

Query: 202 ALITACGQSGAVD 214
            +I+   +S  ++
Sbjct: 648 DIISFGERSAGIE 660


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 114/458 (24%), Positives = 199/458 (43%), Gaps = 41/458 (8%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P   TFN L+  +   +K SE    + R+V   G + D   Y T++    K G +D    
Sbjct: 184 PDTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVNGLCKRGDIDLALS 242

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M    IE NV  Y  +IDG  K   +  AF  +  M +K +KPD   +N+LI+   
Sbjct: 243 LLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLC 302

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G    A  +L++M      ++P+ +T  +L+ A A  G++  A +++  + + +I   
Sbjct: 303 NYGRWSDASRLLSDMIE--RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 360

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   IN        + A  ++  M  K  +PD V  + LI     A +VE   E+ +
Sbjct: 361 IVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFR 420

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   +G+    ++Y++L+     A +   A ++++ M S  + P + T + L+  LC   
Sbjct: 421 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 480

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L K + V   ++   + PN  TY+I++    +   VE G  L       GV PN++++ 
Sbjct: 481 KLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYT 540

Query: 449 CII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 507
            +I G C +  ++                         A  ++RE    GT+P       
Sbjct: 541 TMISGFCRKGLKEE------------------------ADALFREMKEDGTLPDS----- 571

Query: 508 VLGCLQLPYNADIRERLVE-NLGVSADALKRSNLCSLI 544
             GC    YN  IR RL + +   SA+ +K    C  +
Sbjct: 572 --GC----YNTLIRARLRDGDKAASAELIKEMRSCGFV 603



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 114/486 (23%), Positives = 199/486 (40%), Gaps = 57/486 (11%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL--LDMDKVYHARFFNVCKSQKAIKE 79
           A  VS  L  + R    G+ S   D  E + R GL  L +D    A F  + KS+     
Sbjct: 25  AATVSPSLSFFWRRAFSGKTS--YDYREKLSRNGLSELKLDDAV-ALFGEMVKSR----- 76

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                   P P++  F+ L+S  A     +    +   +Q  G+  +   Y+ L+    +
Sbjct: 77  --------PFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCR 128

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
             ++     V  +M+  G EP++ T  +L++G     ++++A      M     KPD V 
Sbjct: 129 RSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVT 188

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           FN LI           A  ++  M A      PD  T G ++      G +D A  + K 
Sbjct: 189 FNTLIHGLFLHNKASEAVALIDRMVA--RGCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 246

Query: 260 IHKYNIKGT---------------------------------PEVYTI--AINCCSQTGD 284
           + K  I+                                   P+V+T    I+C    G 
Sbjct: 247 MEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGR 306

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
           W  A  +  DM ++ + P+ V  ++LID     GK+  A ++  E   + I   I++Y+S
Sbjct: 307 WSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNS 366

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L+          +A +++  M S    P V T N LI   C   ++ + ME+  +M   G
Sbjct: 367 LINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRG 426

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKAR 462
           L  NT+TY+ L+    +  D ++   +  +   DGV P+++ +  ++ G+C   + EKA 
Sbjct: 427 LVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL 486

Query: 463 TLNEHV 468
            + E++
Sbjct: 487 VVFEYL 492



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/459 (22%), Positives = 192/459 (41%), Gaps = 73/459 (15%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RISE + L++ M   G     +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 166 RISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTY 224

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
             +++      D + A  +L+ +++  ++A+  +Y T+I    K   +D  F++F++M  
Sbjct: 225 GTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMET 284

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-- 213
            GI+P+V TY +LI      G+ + A      M  + + P+ V FN+LI A  + G +  
Sbjct: 285 KGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIE 344

Query: 214 -DRAFDVLAEMNAEVHPVD------------------------------PDHITIGALMK 242
            ++ FD + + + + + V                               PD +T   L+K
Sbjct: 345 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIK 404

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
               A +V+   E+++ + +  + G    Y   I    Q GD + A  ++  M   GV P
Sbjct: 405 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 464

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D +  S L+D     GK+E                                   KAL ++
Sbjct: 465 DIITYSILLDGLCKYGKLE-----------------------------------KALVVF 489

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           E+++  K++P + T N +I  +C   ++    ++   +   G+ PN I Y+ ++    RK
Sbjct: 490 EYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 549

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 461
              E    L  + KEDG +P+   +  +I    R  +KA
Sbjct: 550 GLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKA 588



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 172/403 (42%), Gaps = 38/403 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I   + LL+ ME+  +     +Y+     +CK  K + +AF  F  +     
Sbjct: 229 NGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCK-YKHMDDAFDLFNKMETKGI 287

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N L+S   +      A ++L  + E  +  +   + +LI   AK GK+    +
Sbjct: 288 KPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEK 347

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM+   I+PN+ TY +LI+G     ++ +A   + +M SK+  PD V +N LI    
Sbjct: 348 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFC 407

Query: 209 QSGAVDRAFDVLAEMNAE---------------------------------VHPVDPDHI 235
           ++  V+   ++  EM+                                      V PD I
Sbjct: 408 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 467

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+      G++++A  V++ + K  ++     Y I I    + G  E    ++  +
Sbjct: 468 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSL 527

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
           + KGV P+ +  + +I      G  E A  + +E K  G       Y++L+ A     + 
Sbjct: 528 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDK 587

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
             + EL + M+S       ST++ +I  L DG      +E+LS
Sbjct: 588 AASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEMLS 630



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 116/272 (42%), Gaps = 13/272 (4%)

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A  +  EM  +  P  P  I    L+ A A   + D    + + +    I      Y
Sbjct: 62  LDDAVALFGEM-VKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTY 119

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +I +NC  +      A +V   M K G  PD V LS+L++   H  ++  A  ++ +   
Sbjct: 120 SILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVE 179

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G     +++++L+          +A+ L + M +   +P + T   ++  LC    +  
Sbjct: 180 MGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 239

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            + +L  M+   +  N + Y+ ++    +   ++    L ++ +  G+ P++  +  +I 
Sbjct: 240 ALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLIS 299

Query: 453 -MCSR-RYEKA---------RTLNEHVLSFNS 473
            +C+  R+  A         R +N +V++FNS
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFNS 331


>gi|298711207|emb|CBJ32428.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 870

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 170/384 (44%), Gaps = 14/384 (3%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVPNPTLSTFNMLMSV 101
           +L++M R+   D  + Y+    N C   +  + A   F     K    P   T+N +++ 
Sbjct: 237 VLKEMLRESPRDSTREYNL-LLNACAKARKWEHAQLVFEDMKKKAGVKPDNVTYNTVINA 295

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
                  + A   L  ++E GL  D   + TLI  CA+S K +    +F E+V+ G++PN
Sbjct: 296 LGRCGRVKEATVHLHAMKEQGLSPDVVTFGTLIHACAQSAKREPALALFAELVSRGLKPN 355

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
           +  Y   I  C K G   +    +  M +  V+ DRVVFN  I  C Q     R   +L 
Sbjct: 356 LEAYKGCIVSCHKTGHYQQGLDLFNRMLADKVRMDRVVFNTAIACCAQLKLWRRGVAMLD 415

Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCC 279
           EM      V PD  +  + +  C  A Q  +   V   + +      P+V+T +  I C 
Sbjct: 416 EMRE--RKVAPDQYSYNSAIYGCVKAQQSQQMTMVLARMREDGFD--PDVWTYSNLIRCL 471

Query: 280 SQTGDWEFACSVYDDMTKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
           + +  W  A  + DDM  +G V PD    +A +      G+   A  ++   + QG++  
Sbjct: 472 ADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSKVGEWAEAERLVTGMRGQGLAPD 531

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
             +Y+SL+ A  N+  W+KAL + E +++   K      +A I A     Q  + +E+L 
Sbjct: 532 KYTYNSLIYAYGNSGEWEKALSMLEEIRAAGFKVNCMAYSAAIKACDKAFQWERALELLD 591

Query: 399 DM-KSLGLCPNTITYSILLVACER 421
            M +  G+ PN   Y+  + AC R
Sbjct: 592 RMVERGGVKPNLFAYNHAMSACVR 615



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 201/444 (45%), Gaps = 13/444 (2%)

Query: 31  SYNRLIRQGRISEC----IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+R   +  C    ++L+  ME +G+      Y++ F  + + ++  +EA   F+ 
Sbjct: 147 TYNVLLRLCGLGGCWATGLELMGMMEDEGITPNPYHYNSMFMALERGER-WREAAELFRK 205

Query: 87  V----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+  L+ V       + A  VL+ +     +   + Y  L+  CAK+ K
Sbjct: 206 MRACGTRPNALTYAPLIGVMDRCNKQDMAGAVLKEMLRESPRDSTREYNLLLNACAKARK 265

Query: 143 VDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +    VF +M   AG++P+  TY  +I+   + G+V +A      M+ + + PD V F 
Sbjct: 266 WEHAQLVFEDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEQGLSPDVVTFG 325

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI AC QS   + A  + AE+ +    + P+       + +C   G   +  +++  + 
Sbjct: 326 TLIHACAQSAKREPALALFAELVS--RGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRML 383

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              ++    V+  AI CC+Q   W    ++ D+M ++ V PD+   ++ I     A + +
Sbjct: 384 ADKVRMDRVVFNTAIACCAQLKLWRRGVAMLDEMRERKVAPDQYSYNSAIYGCVKAQQSQ 443

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK-SIKLKPTVSTMNAL 380
               +L   +  G    + +YS+L+   +++  W++A+ + + M    +++P     NA 
Sbjct: 444 QMTMVLARMREDGFDPDVWTYSNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAA 503

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           + A     +  +   +++ M+  GL P+  TY+ L+ A     + E  L +L + +  G 
Sbjct: 504 VRACSKVGEWAEAERLVTGMRGQGLAPDKYTYNSLIYAYGNSGEWEKALSMLEEIRAAGF 563

Query: 441 IPNLVMFKCIIGMCSRRYEKARTL 464
             N + +   I  C + ++  R L
Sbjct: 564 KVNCMAYSAAIKACDKAFQWERAL 587



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 115/530 (21%), Positives = 223/530 (42%), Gaps = 56/530 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKSGKVDAM 146
           PT  T+ + +  C   +   G    L L+QE     L+     Y   +T CA + ++  +
Sbjct: 50  PTEETYGLALEACGKVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQLSGV 109

Query: 147 FEVFHEMVNAGIE--------------------PNVHTYGALIDGCAKAGQVAKAFGAYG 186
             +  EM + G+                     P   TY  L+  C   G  A      G
Sbjct: 110 LPLLDEMRDRGVAADVVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELMG 169

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           +M  + + P+   +N++  A  +      A ++  +M A      P+ +T   L+     
Sbjct: 170 MMEDEGITPNPYHYNSMFMALERGERWREAAELFRKMRA--CGTRPNALTYAPLIGVMDR 227

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEV 305
             + D A  V K + + + + +   Y + +N C++   WE A  V++DM KK GV PD V
Sbjct: 228 CNKQDMAGAVLKEMLRESPRDSTREYNLLLNACAKARKWEHAQLVFEDMKKKAGVKPDNV 287

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + +I+  G  G+V+ A   L   K QG+S  ++++ +L+ AC+ +   + AL L+  +
Sbjct: 288 TYNTVINALGRCGRVKEATVHLHAMKEQGLSPDVVTFGTLIHACAQSAKREPALALFAEL 347

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
            S  LKP +      I +        + +++ + M +  +  + + ++  +  C +    
Sbjct: 348 VSRGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRMLADKVRMDRVVFNTAIACCAQLKLW 407

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR-TLNEHVLSFNSGRPQIENKWTS 484
             G+ +L + +E  V P+   +   I  C +  +  + T+    +  +   P +   WT 
Sbjct: 408 RRGVAMLDEMRERKVAPDQYSYNSAIYGCVKAQQSQQMTMVLARMREDGFDPDV---WTY 464

Query: 485 LAL-------MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR-----------ERLVE 526
             L       M++R A+  G +  + +  +V       +NA +R           ERLV 
Sbjct: 465 SNLIRCLADSMLWRRAV--GILDDMLLEGRVQPDAHC-FNAAVRACSKVGEWAEAERLVT 521

Query: 527 NL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGI-VPCVSF 572
            +   G++ D    ++L       GE++ +A S+LEE  + G  V C+++
Sbjct: 522 GMRGQGLAPDKYTYNSLIYAYGNSGEWE-KALSMLEEIRAAGFKVNCMAY 570



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 134/341 (39%), Gaps = 30/341 (8%)

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGI------MRSKNVKPDRVVFNALITACGQS 210
           G  P   TYG  ++ C   G+V K +G          MR  N++   V +   +TAC  +
Sbjct: 47  GWAPTEETYGLALEAC---GKVRKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALT 103

Query: 211 GAVDRAFDVLAEMNAEVHPVD------------------PDHITIGALMKACANAGQVDR 252
             +     +L EM       D                  P  IT   L++ C   G    
Sbjct: 104 RQLSGVLPLLDEMRDRGVAADVVKRALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWAT 163

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
             E+  M+    I   P  Y        +   W  A  ++  M   G  P+ +  + LI 
Sbjct: 164 GLELMGMMEDEGITPNPYHYNSMFMALERGERWREAAELFRKMRACGTRPNALTYAPLIG 223

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLK 371
                 K + A  +L+E   +        Y+ L+ AC+ A+ W+ A  ++E M K   +K
Sbjct: 224 VMDRCNKQDMAGAVLKEMLRESPRDSTREYNLLLNACAKARKWEHAQLVFEDMKKKAGVK 283

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P   T N +I AL    ++ +    L  MK  GL P+ +T+  L+ AC +    E  L L
Sbjct: 284 PDNVTYNTVINALGRCGRVKEATVHLHAMKEQGLSPDVVTFGTLIHACAQSAKREPALAL 343

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLS 470
            ++    G+ PNL  +K  I  C +   Y++   L   +L+
Sbjct: 344 FAELVSRGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRMLA 384


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 170/369 (46%), Gaps = 7/369 (1%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P   T++ L+S        + A Q+L  ++E G++   K+YT LI    K         +
Sbjct: 1218 PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSL 1277

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            F EM +    P+V TY  LI G  KAG++ +A+  +  M+ +  +PD V  N +I   G+
Sbjct: 1278 FEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGK 1337

Query: 210  SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV---YKMIHKYNIK 266
            +G +D A  +  EM  E     P  +T   ++KA   +    RA EV   ++ + +  I 
Sbjct: 1338 AGRLDDAMKLFQEM--ETLRCIPSVVTYNTIIKALFESK--SRASEVPSWFERMKESGIS 1393

Query: 267  GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
             +   Y+I I+   +T   E A  + ++M +KG  P      +LID  G A + + A E+
Sbjct: 1394 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 1453

Query: 327  LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             QE K    S     Y+ ++     A     A+ +++ M  +   P V   NAL++ L  
Sbjct: 1454 FQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 1513

Query: 387  GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
               L + +  +  M+  G  P+  +Y+I+L    +       + +LS  K+  V P++V 
Sbjct: 1514 TGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVS 1573

Query: 447  FKCIIGMCS 455
            +  ++G  S
Sbjct: 1574 YNTVLGALS 1582



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 178/404 (44%), Gaps = 16/404 (3%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
            +Y+ LI    + GR    I LL +M+  G+    K+Y    A FF    +  A+      
Sbjct: 1222 TYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 1281

Query: 84   FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                  P + T+  L+     +   + A+     +Q  G + D      +I    K+G++
Sbjct: 1282 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRL 1341

Query: 144  DAMFEVFHEMVNAGIEPNVHTYG----ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            D   ++F EM      P+V TY     AL +  ++A +V   F     M+   + P    
Sbjct: 1342 DDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFER---MKESGISPSSFT 1398

Query: 200  FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
            ++ LI    ++  +++A  +L EM+ +  P  P      +L+ A   A + D A E+++ 
Sbjct: 1399 YSILIDGFCKTNRMEKAMMLLEEMDEKGFP--PCPAAYCSLIDALGKAKRYDLACELFQE 1456

Query: 260  IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
            + +     +  VY + I    + G  + A +++D+M K G  PD    +AL+      G 
Sbjct: 1457 LKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGM 1516

Query: 320  VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
            ++ A   ++  +  G    I SY+ ++   +      +A+E+  +MK   ++P V + N 
Sbjct: 1517 LDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNT 1576

Query: 380  LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            ++ AL       +  +++ +M +LG   + ITYS +L A  + D
Sbjct: 1577 VLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIGKVD 1620



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 127/297 (42%), Gaps = 40/297 (13%)

Query: 300  VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
            V P E  LS ++   G+A  V  A  I  + K +       +Y+S++    +   ++K  
Sbjct: 1147 VTPTE--LSDVVRMLGNAKMVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVH 1204

Query: 360  ELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            +LY  M +     P   T +ALI+A C   +    +++L++MK +G+ P T  Y++L+  
Sbjct: 1205 QLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIAL 1264

Query: 419  CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF-----NS 473
              + +D    L L  + +     P++  +  +I    R   KA  ++E    F       
Sbjct: 1265 FFKFNDAHGALSLFEEMRHQYCRPDVFTYTELI----RGLGKAGRIDEAYHFFCEMQREG 1320

Query: 474  GRPQ---IENKWTSL--------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR- 521
             RP    + N    L        A+ +++E      IP+V   + ++  L   + +  R 
Sbjct: 1321 CRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKAL---FESKSRA 1377

Query: 522  -------ERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPC 569
                   ER+ E+ G+S  +   S    LIDGF + +   +A  LLEE    G  PC
Sbjct: 1378 SEVPSWFERMKES-GISPSSFTYS---ILIDGFCKTNRMEKAMMLLEEMDEKGFPPC 1430


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 197/430 (45%), Gaps = 24/430 (5%)

Query: 38  QGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN------- 89
           +GR I    +LL +ME++ +      +     ++CK+++ I EA + F  +         
Sbjct: 293 RGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARR-IDEALQVFDRLRGKGGSNWV 351

Query: 90  ---PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGL----KADCKLYTTLITTCAKSG 141
              P +  FN L+  +C   K+ +G    L L++E  +    + +   Y  LI    K+G
Sbjct: 352 GVEPDVVLFNTLIDGLCKVGKEEDG----LSLLEEMKMGNINRPNTVTYNCLIDGFFKAG 407

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
             D   E+F +M   G++PNV T   L+DG  K G+V +A   +  M+ K +K +   + 
Sbjct: 408 NFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYT 467

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           ALI+A      ++RA     EM +      PD +   +L+     AG+++ A  V   + 
Sbjct: 468 ALISAFCGVNNINRAMQCFEEMLSS--GCSPDAVVYYSLISGLCIAGRMNDASVVVSKLK 525

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                     Y + I+   +    E    +  +M + GV PD +  + LI + G  G   
Sbjct: 526 LAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFA 585

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNAL 380
            A +++++   +G+   +++Y +++ A  + KN  + ++++  M S  K+ P     N L
Sbjct: 586 TASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNIL 645

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I ALC  + + + + ++ DMK   + PNT TY+ +L     K  +     L+ +  E+  
Sbjct: 646 IDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEAC 705

Query: 441 IPNLVMFKCI 450
            P+ +  + +
Sbjct: 706 RPDYITMEVL 715



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 173/399 (43%), Gaps = 45/399 (11%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N L++     +D +   ++L  +++  ++     +  L+    K+ ++D   +VF  +  
Sbjct: 285 NALLTWLGRGRDIKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRG 344

Query: 156 ------AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPDRVVFNALITACG 208
                  G+EP+V  +  LIDG  K G+          M+  N+ +P+ V +N LI    
Sbjct: 345 KGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFF 404

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G  DRA ++  +MN E   V P+ IT+  L+      G+V RA E +  +    +KG 
Sbjct: 405 KAGNFDRAHELFRQMNEE--GVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGN 462

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---------- 318
              YT  I+      +   A   +++M   G  PD V   +LI     AG          
Sbjct: 463 AATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVS 522

Query: 319 -------------------------KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
                                    K+E  +E+L E +  G+    I+Y++L+       
Sbjct: 523 KLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTG 582

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPNTITY 412
           ++  A ++ E M    L+P+V T  A+I A C    + + M++  +M S   + PNT+ Y
Sbjct: 583 DFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIY 642

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +IL+ A  R +DV+  + L+   K   V PN   +  I+
Sbjct: 643 NILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAIL 681



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/199 (20%), Positives = 79/199 (39%), Gaps = 22/199 (11%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----------QKAI 77
           YN LI    ++ ++    +LL +ME  G+      Y+     + K+          +K I
Sbjct: 536 YNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMI 595

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITT 136
           KE  R       P++ T+  ++    S K+ +   ++   +   + +  +  +Y  LI  
Sbjct: 596 KEGLR-------PSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDA 648

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             ++  VD    +  +M    + PN  TY A++ G      + KAF     M  +  +PD
Sbjct: 649 LCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPD 708

Query: 197 RVVFNALITACGQSGAVDR 215
            +    L       G +++
Sbjct: 709 YITMEVLTEWLSAVGEIEK 727


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 178/371 (47%), Gaps = 12/371 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ T+N+L++    ++  +    V   +   GL  D   Y  LI   +K G+VD   ++
Sbjct: 187 PTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDL 246

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F++M   GI PNV TY +LI+G  K  ++ KA      M    V+P+ + +N LI     
Sbjct: 247 FYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYST 306

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT- 268
           SG    +  V  EM++ +  + PD     + M A    G++  AR+++  +    +KG  
Sbjct: 307 SGMWKESVRVFKEMSSSL--LVPDVGNCNSFMTALCKHGRIKEARDIFDSM---VLKGPK 361

Query: 269 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+V  Y   ++  +  G      ++++ M  +GV+PD    + LI+     G ++ +  +
Sbjct: 362 PDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLM 421

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            ++   QG++  II++S+++ A         A+E + HM    + P  +  + LI   C+
Sbjct: 422 FEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCN 481

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITY--SILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
              L K  E++SDM S G+ P  I +  SI+   C ++  V  G  ++      G  PNL
Sbjct: 482 RRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC-KEGRVAEGKDVVDLIIHTGQRPNL 540

Query: 445 VMFKCII-GMC 454
           + F  ++ G C
Sbjct: 541 ITFNSLVDGYC 551



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/437 (21%), Positives = 184/437 (42%), Gaps = 10/437 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + GRI E  D+ + M  KG    D + +    +   +   I      F ++      P
Sbjct: 339 LCKHGRIKEARDIFDSMVLKGP-KPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVP 397

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               FN L++  A     + +  +   + + G+  D   ++T+I+   + G++D   E F
Sbjct: 398 DRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF 457

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV-VFNALITACGQ 209
           + M++ G+ P+   Y  LI G      + KA      M SK + P  +  F ++I    +
Sbjct: 458 NHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCK 517

Query: 210 SGAVDRAFDVLAEMNAEVHPVD-PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G V    DV+   +  +H    P+ IT  +L+      G +  A  +   +    ++  
Sbjct: 518 EGRVAEGKDVV---DLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPD 574

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++   + G  + A +++ DM  K V    V  + ++     A +   A E+  
Sbjct: 575 IYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFH 634

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E    G++V I +Y++++G         +A  L E + S+ +K  + T N +I A+    
Sbjct: 635 EMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVG 694

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  +  E+ + + + GL P  +TY +++    +++  E    L S  ++    P+  +  
Sbjct: 695 RRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILN 754

Query: 449 CIIGMCSRRYEKARTLN 465
            II M   + E A+  N
Sbjct: 755 EIIRMLLNKGEVAKAGN 771



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 131/337 (38%), Gaps = 39/337 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE----AFRFFKLVPNPTL 92
           R GR+ + ++    M   G+     VY       C  +  +K     +    K +P P +
Sbjct: 446 RLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCI 505

Query: 93  STFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             F  +++ +C   + +EG   V+ L+   G + +   + +L+      G +     +  
Sbjct: 506 KFFTSIINNLCKEGRVAEGK-DVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLD 564

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M + G+EP+++TY  L+DG  K G++  A   +  M  K V    V +N ++    Q+ 
Sbjct: 565 SMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQAR 624

Query: 212 AVDRAFDVLAEM-----NAEVHP----------------------------VDPDHITIG 238
               A ++  EM        +H                             V  D +T  
Sbjct: 625 RTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFN 684

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            +++A    G+   A+E++  I  Y +  T   Y + I    +   +E A +++  M K 
Sbjct: 685 IVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKS 744

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
              PD   L+ +I    + G+V  A   L +   +GI
Sbjct: 745 SCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGI 781



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 46/315 (14%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN-CC----------- 279
           PD  +  AL+   +  G+VD+A +++  + +  I      Y+  IN  C           
Sbjct: 222 PDVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERV 281

Query: 280 -----------------------SQTGDWEFACSVYDDMTKKGVIPD----EVFLSALID 312
                                  S +G W+ +  V+ +M+   ++PD      F++AL  
Sbjct: 282 LRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCK 341

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G+++ A +I      +G    +ISY +L+   + A        L+  M    + P
Sbjct: 342 H----GRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVP 397

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
                N LI A      + K++ +  DM   G+ P+ IT+S ++ A  R   ++  +   
Sbjct: 398 DRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKF 457

Query: 433 SQAKEDGVIPNLVMFKCII-GMCSRR-YEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 490
           +   + GV P+  ++ C+I G C+RR   KA+ L   +LS     P I+  +TS+   + 
Sbjct: 458 NHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIK-FFTSIINNLC 516

Query: 491 REAIVAGTIPTVEVV 505
           +E  VA     V+++
Sbjct: 517 KEGRVAEGKDVVDLI 531



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 127/324 (39%), Gaps = 43/324 (13%)

Query: 46  DLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMS 100
           +L+ DM  KG+     K + +   N+CK  + + E      L+      P L TFN L+ 
Sbjct: 490 ELISDMLSKGIPPPCIKFFTSIINNLCKEGR-VAEGKDVVDLIIHTGQRPNLITFNSLVD 548

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---------------- 144
                 + + A  +L  ++  G++ D   Y TL+    K G++D                
Sbjct: 549 GYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTL 608

Query: 145 ----------AMF---------EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
                      +F         E+FHEM+ +G+  ++HTY  ++ G  +     +A    
Sbjct: 609 TSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLL 668

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             + S NVK D + FN +I A  + G    A ++ A ++   + + P  +T   ++    
Sbjct: 669 EKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAIST--YGLVPTILTYRVMITNLI 726

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
                + A  ++  + K +      +    I      G+   A +    + KKG++P+  
Sbjct: 727 KEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEAT 786

Query: 306 FLSALIDFAGHAGKVEAAFEILQE 329
             S LI      GK     ++L E
Sbjct: 787 TTSLLIYLFSVNGKYREYIKLLPE 810


>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
          Length = 815

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 198/432 (45%), Gaps = 13/432 (3%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
            +Y+ LI    R G+    ++L++DM R  +      Y+    N C S    +EA    K
Sbjct: 179 ETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYN-NLINACGSSGNWREALEVCK 237

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + +    P L T N+++S   S +    A     L++ A ++ D   +  +I   +K G
Sbjct: 238 KMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLG 297

Query: 142 KVDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +     ++F+ M     E  P+V T+ +++   +  G++      +  M ++ +KP+ V 
Sbjct: 298 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVS 357

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +NAL+ A    G    A  VL ++    + + PD ++   L+ +   + Q  +A+EV+ M
Sbjct: 358 YNALMGAYAVHGMSGTALSVLGDIKQ--NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLM 415

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + K   K     Y   I+     G    A  ++  M + G+ P+ V +  L+     + K
Sbjct: 416 MRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKK 475

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
                 +L  A+++GI++   +Y+S +G+  NA   +KA+ LY+ M+  K+K    T   
Sbjct: 476 KVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTI 535

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI+  C   + P+ +  L +M+ L +      YS +L A  ++  V     + +Q K  G
Sbjct: 536 LISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAG 595

Query: 440 VIPNLVMFKCII 451
             P+++ +  ++
Sbjct: 596 CEPDVIAYTSML 607



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 160/359 (44%), Gaps = 15/359 (4%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  +I   A+   VD    +F EM     +P+  TY ALI+   +AGQ   A      M
Sbjct: 145 IYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDM 204

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               + P R  +N LI ACG SG    A +V  +M    + V PD +T   ++ A  +  
Sbjct: 205 LRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTD--NGVGPDLVTHNIVLSAYKSGR 262

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV--IPDEVF 306
           Q  +A   ++++    ++     + I I C S+ G    A  +++ M +K     PD V 
Sbjct: 263 QYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVT 322

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            ++++      G++E    + +    +G+   I+SY++LMGA +       AL +   +K
Sbjct: 323 FTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIK 382

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              + P V +   L+ +     Q  K  EV   M+     PN +TY+ L+ A      + 
Sbjct: 383 QNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLA 442

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK-----------ARTLNEHVLSFNSG 474
             + +  Q ++DG+ PN+V    ++  CSR  +K           +R +N +  ++NS 
Sbjct: 443 EAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSA 501



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 183/443 (41%), Gaps = 11/443 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + SYN L+      G     + +L D+++ G++  D V +    N     +  
Sbjct: 348 AEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIP-DVVSYTCLLNSYGRSRQP 406

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A   F ++      P + T+N L+    S+     A ++ R +++ G+K +     TL
Sbjct: 407 GKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTL 466

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +  C++S K   +  V     + GI  N   Y + I     A ++ KA   Y  MR K V
Sbjct: 467 LAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKV 526

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           K D V F  LI+   +      A   L EM     P+  +     +++ A +  GQV  A
Sbjct: 527 KADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKE--VYSSVLCAYSKQGQVTEA 584

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             ++  +     +     YT  ++  + +  W  AC +  +M   G+ PD +  SAL+  
Sbjct: 585 ESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELLLEMEANGIEPDSIACSALMRA 644

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G+    F ++   + + I      +  +  AC+  + W++A++L + M       +
Sbjct: 645 FNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLS 704

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           +   N ++       ++   M++   + + G+  N  TY+ILL       +    + +L 
Sbjct: 705 IGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLE 764

Query: 434 QAKEDGVIPNLVMFKCIIGMCSR 456
                G+ P+  M++ II    R
Sbjct: 765 WMSGAGIQPSNQMYRDIISFGER 787



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 124/306 (40%), Gaps = 21/306 (6%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           I    + + I L + M +K +      +       C+  K   EA  + K + + ++   
Sbjct: 506 INAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSK-YPEAISYLKEMEDLSIPLT 564

Query: 96  NMLMS--VCASSK-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             + S  +CA SK     ++E  F  +++   AG + D   YT+++     S K     E
Sbjct: 565 KEVYSSVLCAYSKQGQVTEAESIFNQMKM---AGCEPDVIAYTSMLHAYNASEKWGKACE 621

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   GIEP+     AL+    K GQ +  F    +MR K +     VF  + +AC 
Sbjct: 622 LLLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACN 681

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIG---ALMKACANAGQVDRAREVYKMIHKYNI 265
                 RA D++  M+    P  P  ++IG    ++     +G+V+   +++  I    +
Sbjct: 682 TLQEWKRAIDLIQMMD----PYLPS-LSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGV 736

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
               + Y I +      G+W     V + M+  G+ P       +I F   +  +E  FE
Sbjct: 737 GINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIE--FE 794

Query: 326 ILQEAK 331
            L   K
Sbjct: 795 PLIRQK 800



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 39/193 (20%), Positives = 83/193 (43%), Gaps = 8/193 (4%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +  LH+YN   + G+  E   LL +ME  G+ + D +  +               F    
Sbjct: 604 TSMLHAYNASEKWGKACE---LLLEMEANGI-EPDSIACSALMRAFNKGGQPSNVFVLMD 659

Query: 86  LVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           L+       T + F  + S C + ++ + A  +++++          L   ++    KSG
Sbjct: 660 LMREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSG 719

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KV+AM ++F++++ +G+  N+ TY  L++     G   K       M    ++P   ++ 
Sbjct: 720 KVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYR 779

Query: 202 ALITACGQSGAVD 214
            +I+   +S  ++
Sbjct: 780 DIISFGERSAGIE 792


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 160/349 (45%), Gaps = 5/349 (1%)

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           ++ A  V+ +++++G   D   Y  LI+   KSG++D   +V   M    + P+V TY  
Sbjct: 165 TKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNT 221

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           ++     +G++ +A         K   PD + +  LI A  +   V +A  +L EM  + 
Sbjct: 222 ILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK- 280

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
               PD +T   L+      G++D A +    +  Y  +     + I +     TG W  
Sbjct: 281 -GSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMD 339

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  +  DM +KG  P  V  + LI+F    G +  A +IL++    G +   +SY+ L+ 
Sbjct: 340 AEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLH 399

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                K   +A+E  + M S    P + T N L+TALC   ++   +E+L+ + S G  P
Sbjct: 400 GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP 459

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             ITY+ ++    +    E  + LL + +  G+ P+++ +  ++   SR
Sbjct: 460 VLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSR 508



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 200/440 (45%), Gaps = 24/440 (5%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHAR-----FFNVCKSQKA--IKEAFRFFKL 86
           RL+R G + +    LE M  +G  D+  +         F  + K++KA  + E       
Sbjct: 123 RLVRNGELEDGFKFLESMVYRG--DIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 180

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VP+  + T+N+L+S    S + + A QVL  +  A    D   Y T++ T   SGK+   
Sbjct: 181 VPD--VITYNVLISGYCKSGEIDNALQVLDRMNVA---PDVVTYNTILRTLCDSGKLKQA 235

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            EV    +     P+V TY  LI+   K   V +A      MR+K  KPD V +N LI  
Sbjct: 236 MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLING 295

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNI 265
             + G +D A   L  M +  +   P+ IT   ++++ C+    +D  + +  M+ K   
Sbjct: 296 ICKEGRLDEAIKFLNNMPS--YGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK--- 350

Query: 266 KGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             +P V T  I IN   + G    A  + + M   G  P+ +  + L+       K++ A
Sbjct: 351 GCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRA 410

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E L    ++G    I++Y++L+ A         A+E+   + S    P + T N +I  
Sbjct: 411 IEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDG 470

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L    +  + +++L +M+  GL P+ ITYS L+    R+  V+  +      +  G+ PN
Sbjct: 471 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 530

Query: 444 LVMFKCI-IGMC-SRRYEKA 461
            + +  I +G+C SR+ ++A
Sbjct: 531 AITYNSIMLGLCKSRQTDRA 550



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 198/443 (44%), Gaps = 28/443 (6%)

Query: 17  KHANYAHDVSEQ------LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHA 65
           K A +  ++ EQ      + +YN LI    + G I   + +L+ M     +  D V Y+ 
Sbjct: 166 KKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN----VAPDVVTYNT 221

Query: 66  RFFNVCKSQKAIKEAF----RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE- 120
               +C S K +K+A     R  +    P + T+ +L+   A+ K+S G  Q ++L+ E 
Sbjct: 222 ILRTLCDSGK-LKQAMEVLDRQLQKECYPDVITYTILIE--ATCKES-GVGQAMKLLDEM 277

Query: 121 --AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
              G K D   Y  LI    K G++D   +  + M + G +PNV T+  ++      G+ 
Sbjct: 278 RNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRW 337

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
             A      M  K   P  V FN LI    + G + RA D+L +M   +H   P+ ++  
Sbjct: 338 MDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM--PMHGCTPNSLSYN 395

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+       ++DRA E   ++           Y   +    + G  + A  + + ++ K
Sbjct: 396 PLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSK 455

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G  P  +  + +ID     GK E A ++L E + +G+   II+YSSL+   S      +A
Sbjct: 456 GCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEA 515

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           ++ +  ++ + ++P   T N+++  LC   Q  + ++ L+ M S    P   TY+IL+  
Sbjct: 516 IKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEG 575

Query: 419 CERKDDVEVGLMLLSQAKEDGVI 441
              +   +  L LL++    G++
Sbjct: 576 IAYEGLAKEALDLLNELCSRGLV 598


>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
 gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 166/372 (44%), Gaps = 4/372 (1%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +  ++ +M+      + E    V + ++E G       Y  LI    K GKV    EV  
Sbjct: 413 IDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSK 472

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M +AGI+ N+ TY  LI+G  K      AF  +  +    +KPD V++N +I A    G
Sbjct: 473 MMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMG 532

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA  ++ EM  + H   P   T   ++   A AG++ RA E++ M+ +     T   
Sbjct: 533 NMDRAIHMVKEMQKKRH--RPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHT 590

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   +    +    E A  + D+M   GV PDE   + +++     G    AFE   + +
Sbjct: 591 FNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLR 650

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N+G+ + + +Y +L+ AC  +   Q AL +   M +  +       N LI        + 
Sbjct: 651 NEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVW 710

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  MK  G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I
Sbjct: 711 EAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLI 770

Query: 452 --GMCSRRYEKA 461
               C+   EKA
Sbjct: 771 HGWACASLPEKA 782



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 165/374 (44%), Gaps = 18/374 (4%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ML++     KD   AF V   V + GLK D  LY  +I      G +D    +  
Sbjct: 483 MKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVK 542

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM      P   T+  +I G A+AG++ +A   + +MR     P    FNAL+    +  
Sbjct: 543 EMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKR 602

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +++A ++L EM   +  V PD  T   +M   A  G   +A E +  +    ++     
Sbjct: 603 QMEKAVEILDEM--ALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFT 660

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++Q+ K
Sbjct: 661 YEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMK 720

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I +Y+S + AC  A +  +A +  + M+++ +KP V T   LI          
Sbjct: 721 QEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPE 780

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           K +    +MK  GL P+   Y  L+ +            LLS+A     +    ++  I+
Sbjct: 781 KALRCFEEMKLAGLKPDKAVYHCLMTS------------LLSRA----TVAEAYIYSGIL 824

Query: 452 GMCSRRYEKARTLN 465
            +C    E   T++
Sbjct: 825 SICREMIESELTVD 838



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 161/344 (46%), Gaps = 2/344 (0%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A  ++R ++E G+ A   +Y T++      G  +    VF  +   G  P+V +YG LI+
Sbjct: 397 AESLVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLIN 456

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
              K G+V+KA     +M S  +K +   ++ LI    +      AF V  ++  +   +
Sbjct: 457 MYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKD--GL 514

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD +    ++KA    G +DRA  + K + K   + T   +   I+  ++ G+   A  
Sbjct: 515 KPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALE 574

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           ++D M + G IP     +AL+       ++E A EIL E    G+S    +Y+++M   +
Sbjct: 575 IFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYA 634

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
              +  KA E +  +++  L+  V T  AL+ A C   ++   + V  +M +  +  NT 
Sbjct: 635 ALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTF 694

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
            Y+IL+    R+ DV     L+ Q K++GV P++  +   I  C
Sbjct: 695 VYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINAC 738



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 167/377 (44%), Gaps = 8/377 (2%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P    F +++   A   D   A Q    ++  G+     +YT+LI   A    +
Sbjct: 294 FERIKKPARREFGLMVGYYARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDM 353

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ------VAKAFGAYGIMRSKNVKPDR 197
           +       +M   G+E ++ TY  ++ G AK G       + +A      M  + +    
Sbjct: 354 EEALSCVRKMKEEGVEMSLVTYSIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPI 413

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
            +++ ++      G  ++   V   +        P  I+ G L+      G+V +A EV 
Sbjct: 414 DIYHTMMNGYTMIGNEEKCLIVFKRLKE--CGFAPSVISYGCLINMYTKMGKVSKALEVS 471

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           KM+    IK   + Y++ IN   +  DW  A +V++D+ K G+ PD V  + +I      
Sbjct: 472 KMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGM 531

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G ++ A  +++E + +       ++  ++   + A   ++ALE+++ M+     PTV T 
Sbjct: 532 GNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTF 591

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           NAL+  L +  Q+ K +E+L +M   G+ P+  TY+ ++       D        ++ + 
Sbjct: 592 NALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRN 651

Query: 438 DGVIPNLVMFKCIIGMC 454
           +G+  ++  ++ ++  C
Sbjct: 652 EGLELDVFTYEALLKAC 668



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 11/288 (3%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I+     G +   I ++++M++K      + +        ++ + ++ A   F ++
Sbjct: 521 YNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGE-MRRALEIFDMM 579

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 PT+ TFN L+      +  E A ++L  +  AG+  D   YTT++   A  G  
Sbjct: 580 RRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDT 639

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
              FE F ++ N G+E +V TY AL+  C K+G++  A      M ++N+  +  V+N L
Sbjct: 640 GKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNIL 699

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    + G V  A D++ +M  E   V PD  T  + + AC  AG + RA +  + +   
Sbjct: 700 IDGWARRGDVWEAADLMQQMKQE--GVQPDIHTYTSFINACCKAGDMLRATKTIQEMEAL 757

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            +K   + YT  I+  +     E A   +++M   G+ PD+     L+
Sbjct: 758 GVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLM 805



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 36/171 (21%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+++G+                     
Sbjct: 686 AQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGV--------------------- 724

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   ++ C  + D   A + ++ ++  G+K + K YTTLI   
Sbjct: 725 -----------QPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNVKTYTTLIHGW 773

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           A +   +     F EM  AG++P+   Y  L+        VA+A+   GI+
Sbjct: 774 ACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLSRATVAEAYIYSGIL 824


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/364 (24%), Positives = 167/364 (45%), Gaps = 10/364 (2%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           F+   +  +I+     F  +P  T+  FN +M V A S   +   Q+L  ++   L+ D 
Sbjct: 39  FDYPLADPSIRWPHLRFPHLPGATVQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDL 98

Query: 128 KLYTTLITTCAKSGKV--DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
             + TLI   AKSG +   + F++  E+   G+ P+V TY  LI  C++   +  A   +
Sbjct: 99  VSFNTLINARAKSGCLAPGSAFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVF 158

Query: 186 GIMRSKNVKPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
             M +   +PD   +NA+++    CG++   +R F  L E         PD +T  +L+ 
Sbjct: 159 EEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFRELVEKG-----FKPDAVTYNSLLY 213

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
           A A  G  D    V + + +   K     Y   I+   + G  + A  +YD+M   G  P
Sbjct: 214 AFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTP 273

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D V  + LID  G   ++  A ++L+E  + G+   ++++S+L+ A +     ++A+  +
Sbjct: 274 DAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTF 333

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
            HM +  +KP       ++  +     + K M +   M + G  P+   Y ++L A  + 
Sbjct: 334 SHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKG 393

Query: 423 DDVE 426
           ++ +
Sbjct: 394 NEYD 397



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 141/626 (22%), Positives = 250/626 (39%), Gaps = 106/626 (16%)

Query: 19  ANYAHDVSEQLHSYNRLIRQGRISECI------DLLEDMERKGLLDMDKVYHARFFNVCK 72
           A    ++   L S+N LI     S C+      DLL ++ + GL   D + +    + C 
Sbjct: 88  AMRGQELEPDLVSFNTLINARAKSGCLAPGSAFDLLLEVRQVGLRP-DVITYNTLISACS 146

Query: 73  SQKAIKEAFRFFKLVP----NPTLSTFNMLMSV---CASSKDSEGAFQVLRLVQEAGLKA 125
               + +A   F+ +      P L T+N ++SV   C  ++D+E  F   R + E G K 
Sbjct: 147 QGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMF---RELVEKGFKP 203

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   Y +L+   AK G  D +  V  E+V AG + +  TY  +I    K G++  A G Y
Sbjct: 204 DAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLY 263

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHP--------------- 229
             MR+    PD V +  LI + G+   +  A  VL EM +A + P               
Sbjct: 264 DEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKG 323

Query: 230 -----------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
                            V PD +    ++   A +G + +   +Y+ +     +    +Y
Sbjct: 324 GRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALY 383

Query: 273 TIAINCCSQTGDWEFACSVYDDMT---------------------------KKGVI---- 301
            + +   ++  +++   +V  DM                            KK  +    
Sbjct: 384 QVMLAALAKGNEYDEIEAVVQDMEVVCQMNPQLVSSILIKAECISQGAKLLKKACLQGHE 443

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALE 360
           PD   L +++D     GK E    +LQ  +     S  +IS  S+M  C N K    A++
Sbjct: 444 PDSKSLLSILDAYETTGKHEEGLSLLQFIREHVPSSCNLISECSIMLLCKNQK-IAAAMQ 502

Query: 361 LYEHMKSIK---LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
            Y  M+ +K        +    LIT L + +  P+  +V SDM+ +G+ P+   Y  ++ 
Sbjct: 503 EYSSMQMLKCGSFGQDCNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMIS 562

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG--- 474
           A  +    E    L+ +A + G+  N++  +  +      Y K + L +H  +F  G   
Sbjct: 563 AYCKLGFPETAHQLMDEAVQSGISLNILSSRVTM---IEAYGKIK-LWQHAENFVKGLKQ 618

Query: 475 RPQIENK-WTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 521
            P I+ + W +L            A  V+   I  G +PT++ V+ ++  L +    D  
Sbjct: 619 EPSIDRRIWNALIHAYAESGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDEL 678

Query: 522 ERLVENLGVSADALKRSNLCSLIDGF 547
             +V+ L      + +S +  ++D F
Sbjct: 679 YVIVQELQDMGFKISKSTVILMLDAF 704



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 172/386 (44%), Gaps = 7/386 (1%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K  P+     +N L+   A S   E A  V  ++ E G          ++      G++
Sbjct: 616 LKQEPSIDRRIWNALIHAYAESGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRL 675

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D ++ +  E+ + G + +  T   ++D   KAG + +    Y  M+     P+  ++ ++
Sbjct: 676 DELYVIVQELQDMGFKISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSM 735

Query: 204 ITACGQSGAVDRAFDV-LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           I+   ++    R  DV L  +  E    +PD   +  L+      G  D+  EVY  I +
Sbjct: 736 ISLLCRN---KRYRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEVYHSILE 792

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             ++   + Y   I   S+    E   ++ ++M KKG+ P      +L+  +G A   E 
Sbjct: 793 AGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQ 852

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A ++ +E +++G  +    Y  LM    +A N  KA +L   MK   ++PT++TM+ L+T
Sbjct: 853 AEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMT 912

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           +        +  +VL+ +KS  L  +T+ YS +  A  +  D  +G+  L + K DGV P
Sbjct: 913 SYGTAGHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAYLKNGDYNLGITKLLEMKADGVKP 972

Query: 443 NLVMFKCII---GMCSRRYEKARTLN 465
           +  ++ C I    +C R  +    LN
Sbjct: 973 DHQVWTCFIRAASLCERTADAILLLN 998



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 142/319 (44%), Gaps = 5/319 (1%)

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG--AVDRAFD 218
            V  + A++   A++G+          MR + ++PD V FN LI A  +SG  A   AFD
Sbjct: 62  TVQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAFD 121

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           +L E+      + PD IT   L+ AC+    +D A  V++ +     +     Y   ++ 
Sbjct: 122 LLLEVRQV--GLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSV 179

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             + G  + A  ++ ++ +KG  PD V  ++L+      G  +    + +E    G    
Sbjct: 180 HGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKD 239

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
            I+Y++++           AL LY+ M+++   P   T   LI +L   D++    +VL 
Sbjct: 240 GITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLE 299

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 458
           +M   GL P  +T+S L+ A  +    E  +   S     GV P+ + +  ++ + +R  
Sbjct: 300 EMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSG 359

Query: 459 EKARTLNEHVLSFNSG-RP 476
           +  + +  +    N G RP
Sbjct: 360 DMRKLMALYQTMMNDGYRP 378



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 146/340 (42%), Gaps = 27/340 (7%)

Query: 37   RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-------- 88
            + G I E + +   M+  G L    +Y +    +C++++     +R  +L+         
Sbjct: 706  KAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRNKR-----YRDVELMVVEMERAGF 760

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             P L+  N L+ +   + + +   +V   + EAGL+ +   Y TLI   +++ + +  F 
Sbjct: 761  EPDLTILNTLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFT 820

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT--- 205
            + +EM   G+ P + +Y +L+    KA    +A   +  +RSK  + +R +++ L+    
Sbjct: 821  LLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYR 880

Query: 206  -ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
             AC  S    +A  +LA M  +   ++P   T+  LM +   AG  D A +V   +   +
Sbjct: 881  DACNHS----KAEQLLASMKED--GIEPTIATMHILMTSYGTAGHPDEAEKVLNSLKSSS 934

Query: 265  IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            ++ +   Y+   N   + GD+    +   +M   GV PD    +  I  A    +   A 
Sbjct: 935  LEVSTLPYSTVFNAYLKNGDYNLGITKLLEMKADGVKPDHQVWTCFIRAASLCERTADAI 994

Query: 325  EILQEAKNQGISVGII----SYSSLMGACSNAKNWQKALE 360
             +L   ++    + I       SSL+   SN      ALE
Sbjct: 995  LLLNSLRDCEFDLPIRLLTERTSSLLTEVSNFLEELDALE 1034


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 188/388 (48%), Gaps = 17/388 (4%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+++  P L  + +L+   A   D   A      ++ + +K +  +YT+LI   A++  +
Sbjct: 123 FQVIDKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDM 182

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +       EM++ GI+ N   + ++I G A AG    A   +   +++N+ P  +V+N++
Sbjct: 183 EGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSI 242

Query: 204 ITACGQSGAVDRAFDVLAEMNAE----------------VHPVDPDH-ITIGALMKACAN 246
           + A  Q+G ++    +LA+M  E                    D +  ++    +K    
Sbjct: 243 VQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQ 302

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           AG + +A ++ + + K+ +     +Y + ++  ++ GD+  A  V++DM   G+ PD V 
Sbjct: 303 AGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVI 362

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            + L+     AG+++ A  +L+  +   +   I +Y+S++       N QKALE+++ +K
Sbjct: 363 YNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIK 422

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +  L+P V + N+L++ L    Q+     +L++M + G+ P+   Y+ L     R  DVE
Sbjct: 423 TAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVE 482

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
               +  + K++ +  ++V +  ++  C
Sbjct: 483 KAFGVFQRMKKENLAIDIVAYGALLKAC 510



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 168/382 (43%), Gaps = 38/382 (9%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML 98
           G +++ +D+LE+M++ G+                                +P    + M+
Sbjct: 304 GNMAKALDILEEMDKHGV--------------------------------SPNKMIYAMI 331

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           M   A   D   AF+V   +  AGLK D  +Y  L+    K+G++D    V   +    +
Sbjct: 332 MDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRL 391

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
            P + TY +++DG  K G + KA   +  +++  ++P  V +N+L++   ++  ++ A  
Sbjct: 392 LPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARL 451

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           +L EM A  + V P      AL +  A  G V++A  V++ + K N+      Y   +  
Sbjct: 452 MLNEMLA--NGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKA 509

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA-GHAGKVEAAFEILQEAKNQGISV 337
           C  +G    A  V+  +T  G+  +++    ++D A   AG+VE A E++   +  G   
Sbjct: 510 CCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAMERDGTKP 569

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHM---KSIKLKPTVSTMNALITALCDGDQLPKTM 394
             + Y+SL+ A   +   +    L   M    S + KP + T N LI        +P+  
Sbjct: 570 DTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAE 629

Query: 395 EVLSDMKSLGLCPNTITYSILL 416
           E+   +  L L P+  T++ L+
Sbjct: 630 ELFQGLARLKLVPDATTWTALM 651



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 188/458 (41%), Gaps = 64/458 (13%)

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           E F+   LVP   +  +N ++     + + E    +L  ++E G + +  LYTT++   A
Sbjct: 225 EKFKAENLVPGGIV--YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFA 282

Query: 139 -------------------KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
                              ++G +    ++  EM   G+ PN   Y  ++DG A+ G   
Sbjct: 283 EIRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFT 342

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            AF  +  M S  +KPD V++N L+                                   
Sbjct: 343 AAFKVWEDMVSAGLKPDIVIYNILV----------------------------------- 367

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
              A   AG++D+A  V + I    +  T E YT  ++   + G+ + A  V+D +   G
Sbjct: 368 --HAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAG 425

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + P  V  ++L+     A ++E A  +L E    G+      Y++L    +   + +KA 
Sbjct: 426 LRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAF 485

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VA 418
            +++ MK   L   +    AL+ A C+   +    EV   +   GL  N ITY  +L  A
Sbjct: 486 GVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITYCTMLDGA 545

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM--CSRRYEKARTLNEHVLSFNSGRP 476
             R   VE    L+S  + DG  P+ +++  +I     S R+E    L   ++  +S + 
Sbjct: 546 YARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQT 605

Query: 477 QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 514
           + +    +  + VY +   AG IP  E + + L  L+L
Sbjct: 606 KPDIGTYNTLIQVYAQ---AGFIPRAEELFQGLARLKL 640



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 157/352 (44%), Gaps = 44/352 (12%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           R G  +    + EDM   GL     +Y+      CK+ +  K       +  N   PT+ 
Sbjct: 337 RGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIE 396

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+  ++       + + A +V   ++ AGL+     Y +L++  AK+ +++    + +EM
Sbjct: 397 TYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEM 456

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +  G+ P+   Y AL +G A+ G V KAFG +  M+ +N+  D V + AL+ AC  SGA+
Sbjct: 457 LANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAM 516

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMK-ACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
             A +V  ++      +  + IT   ++  A A AG+V+ A E+                
Sbjct: 517 HGAAEVFQQITDA--GLKHNQITYCTMLDGAYARAGRVEEAEELVSA------------- 561

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---VEAAFEILQE 329
                                 M + G  PD +  ++LI+  G +G+   +EA    + +
Sbjct: 562 ----------------------MERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMVK 599

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           + ++     I +Y++L+   + A    +A EL++ +  +KL P  +T  AL+
Sbjct: 600 SSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALM 651


>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 176/370 (47%), Gaps = 5/370 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P   T++ L+S     +  + AF++   ++E GL    K+YTT++    K  KV+A   
Sbjct: 227 SPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALR 286

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G  P V TY  LI G  K G+V  A+  +  M     KPD V+ N LI   G
Sbjct: 287 LVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILG 346

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC-ANAGQVDRAREVYKMIHKYNIKG 267
           ++G ++ A  +  +M++      P+ +T   ++KA   +      A   ++ +    I  
Sbjct: 347 RAGRLEDALKLFGKMDS--LQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAP 404

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +   Y I I+   +T   E A  + ++M +KG  P      +LID  G A + EAA E+ 
Sbjct: 405 SSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELF 464

Query: 328 QEAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           QE K N G S   + Y+ ++    N      A++L+  MK +   P V T NAL++ +  
Sbjct: 465 QELKENCGRSSARV-YAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIR 523

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              + +   ++ +M+  G  P+  +++I+L    +    +  + + ++ KE  ++P+ V 
Sbjct: 524 AGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVS 583

Query: 447 FKCIIGMCSR 456
           +  I+   SR
Sbjct: 584 YNTILSCLSR 593



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 175/385 (45%), Gaps = 12/385 (3%)

Query: 47  LLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           L ++M+  GL   +K+Y    A +F + K + A++           PT+ T+  L+    
Sbjct: 252 LFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLG 311

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
                + A+ +   + + G K D  L   LI    ++G+++   ++F +M +    PNV 
Sbjct: 312 KVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVV 371

Query: 164 TYG----ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           TY     A+ +  A A + A  F     M++  + P    +  LI    ++  V++A  +
Sbjct: 372 TYNTVIKAIFESKAPASEAALWFEK---MKANGIAPSSFTYAILIDGFCKTNRVEKALLL 428

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L EM+ +  P  P      +L+ +   A + + A E+++ + +   + +  VY + I   
Sbjct: 429 LEEMDEKGFP--PCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHF 486

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
              G    A  ++ +M K G  PD    +AL+     AG ++ A  +++  +  G +  I
Sbjct: 487 GNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDI 546

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            S++ ++   +     ++A+E++  MK  ++ P   + N +++ L          +++ +
Sbjct: 547 KSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMRE 606

Query: 400 MKSLGLCPNTITYSILLVACERKDD 424
           MK  G   ++ITYS +L A  + D+
Sbjct: 607 MKLKGFEYDSITYSSILEAVGKVDE 631



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 30/355 (8%)

Query: 107 DSEGAFQVLRLVQEAGL------------KADCKL----YTTLITTCAKSGKVDAMFEVF 150
           DS     ++R ++E+GL            ++ C +    ++ ++    K+  V+    VF
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG-IMRSKNVKPDRVVFNALITACGQ 209
           +++      P    Y  LI      G   K    Y  I    N  PD + ++ALI+A G+
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 210 SGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
               D AF +  EM    +HP +  + TI A+        ++++     +++ +   KG 
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAMY------FKLNKVEAALRLVEEMKGKGC 296

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P V  YT  I    + G  + A S++ +M K G  PD V ++ LI+  G AG++E A +
Sbjct: 297 APTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALK 356

Query: 326 ILQEAKNQGISVGIISYSSLMGAC--SNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           +  +  +   +  +++Y++++ A   S A   + AL  +E MK+  + P+  T   LI  
Sbjct: 357 LFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAAL-WFEKMKANGIAPSSFTYAILIDG 415

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            C  +++ K + +L +M   G  P    Y  L+ +  R    E    L  + KE+
Sbjct: 416 FCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKEN 470



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 1/152 (0%)

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D     ALI     +G V+  +  +Q+      SVG   +S ++     AK   KAL ++
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACER 421
             +K  K  PT +  N LI  L       K  E+ +++ S G C P+TITYS L+ A  +
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
            +  +    L  + KE+G+ P   ++  I+ M
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAM 274


>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Vitis vinifera]
          Length = 844

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 171/361 (47%), Gaps = 3/361 (0%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N ++   A ++  E AF   + VQ++G K D   Y +LIT     G     FEV+  M  
Sbjct: 253 NQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEA 312

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           AG   +  TY  +I   AK+G++  AF  +  M+ KN++P  +VF +L+ + G++G +D 
Sbjct: 313 AGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDT 372

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           +  V  EM      + P      +L+++   AG+++ A  ++  + K   +    +YT+ 
Sbjct: 373 SMKVYMEMQG--FGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMV 430

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           +   +++G  E A SV+ DM K G +P     S L++    +G+V++A ++     N G+
Sbjct: 431 VESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGL 490

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
             G+ +Y++L+   +N K    A ++   MK++     VS  + L+  + DG  +   + 
Sbjct: 491 RPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVYIKDG-SVDLALR 549

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
            L  M S G+  N      L  +C +    E    LL          +L+++  I+    
Sbjct: 550 WLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAHLV 609

Query: 456 R 456
           R
Sbjct: 610 R 610



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 157/336 (46%), Gaps = 5/336 (1%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           ++   AK+ K++  F  F ++ ++G + +  TY +LI      G   KAF  Y  M +  
Sbjct: 255 VVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAG 314

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
              D   +  +I +  +SG +D AF +  EM  +   + P  +   +L+ +   AG++D 
Sbjct: 315 CLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEK--NLRPSFLVFASLVDSMGKAGRLDT 372

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           + +VY  +  + ++ +  +Y   I    + G  E A  ++D+M K G  P+    + +++
Sbjct: 373 SMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVE 432

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               +GK+E A  +  + +  G      +YS L+   S +     A++LY  M +  L+P
Sbjct: 433 SHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRP 492

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            +ST  AL+T L +   +    +VL +MK++G   +     +L+V   +   V++ L  L
Sbjct: 493 GLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVYI-KDGSVDLALRWL 551

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNE 466
                 G+  N  + + +   C +   YE A+ L E
Sbjct: 552 RFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLE 587



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 132/270 (48%), Gaps = 7/270 (2%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +T+N L+++  +      AF+V   ++ AG   D   Y  +I + AKSG++DA F++F E
Sbjct: 285 ATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQE 344

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M    + P+   + +L+D   KAG++  +   Y  M+   ++P   ++ +LI +  ++G 
Sbjct: 345 MKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGK 404

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           ++ A  +  EM        P++     ++++ A +G+++ A  V+  + K     TP  Y
Sbjct: 405 LETALRIWDEMKKA--GFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTY 462

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +  +   S +G  + A  +Y+ MT  G+ P     +AL+    +   V+ A ++L E K 
Sbjct: 463 SCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKA 522

Query: 333 QGISVGIISYSSLM-----GACSNAKNWQK 357
            G SV + +   LM     G+   A  W +
Sbjct: 523 MGFSVDVSASDVLMVYIKDGSVDLALRWLR 552



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 122/282 (43%), Gaps = 10/282 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFRFFKLVPN 89
           L + GR+     L ++M+ K L     V+ +   ++ K+ +      +    + F L P+
Sbjct: 329 LAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPS 388

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            T+  +  L+     +   E A ++   +++AG + +  LYT ++ + AKSGK++    V
Sbjct: 389 ATM--YVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSV 446

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M  AG  P   TY  L++  + +GQV  A   Y  M +  ++P    + AL+T    
Sbjct: 447 FSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLAN 506

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              VD A  VL EM A    VD   ++   ++      G VD A    + +    I+   
Sbjct: 507 KKLVDVAAKVLLEMKAMGFSVD---VSASDVLMVYIKDGSVDLALRWLRFMGSSGIRTNN 563

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            +       C + G +E A  + +         D +  ++++
Sbjct: 564 FIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSIL 605


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 160/349 (45%), Gaps = 5/349 (1%)

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           ++ A  V+ +++++G   D   Y  LI+   KSG++D   +V   M    + P+V TY  
Sbjct: 108 TKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNT 164

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           ++     +G++ +A         K   PD + +  LI A  +   V +A  +L EM  + 
Sbjct: 165 ILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG 224

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
               PD +T   L+      G++D A +    +  Y  +     + I +     TG W  
Sbjct: 225 S--KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMD 282

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  +  DM +KG  P  V  + LI+F    G +  A +IL++    G +   +SY+ L+ 
Sbjct: 283 AEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLH 342

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                K   +A+E  + M S    P + T N L+TALC   ++   +E+L+ + S G  P
Sbjct: 343 GFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSP 402

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             ITY+ ++    +    E  + LL + +  G+ P+++ +  ++   SR
Sbjct: 403 VLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSR 451



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 200/440 (45%), Gaps = 24/440 (5%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHAR-----FFNVCKSQKA--IKEAFRFFKL 86
           RL+R G + +    LE M  +G  D+  +         F  + K++KA  + E       
Sbjct: 66  RLVRNGELEDGFKFLESMVYRG--DIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 123

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VP+  + T+N+L+S    S + + A QVL  +  A    D   Y T++ T   SGK+   
Sbjct: 124 VPD--VITYNVLISGYCKSGEIDNALQVLDRMNVA---PDVVTYNTILRTLCDSGKLKQA 178

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            EV    +     P+V TY  LI+   K   V +A      MR+K  KPD V +N LI  
Sbjct: 179 MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLING 238

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNI 265
             + G +D A   L  M +  +   P+ IT   ++++ C+    +D  + +  M+ K   
Sbjct: 239 ICKEGRLDEAIKFLNNMPS--YGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRK--- 293

Query: 266 KGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             +P V T  I IN   + G    A  + + M   G  P+ +  + L+       K++ A
Sbjct: 294 GCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRA 353

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E L    ++G    I++Y++L+ A         A+E+   + S    P + T N +I  
Sbjct: 354 IEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDG 413

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L    +  + +++L +M+  GL P+ ITYS L+    R+  V+  +      +  G+ PN
Sbjct: 414 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 473

Query: 444 LVMFKCI-IGMC-SRRYEKA 461
            + +  I +G+C SR+ ++A
Sbjct: 474 AITYNSIMLGLCKSRQTDRA 493



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 198/443 (44%), Gaps = 28/443 (6%)

Query: 17  KHANYAHDVSEQ------LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHA 65
           K A +  ++ EQ      + +YN LI    + G I   + +L+ M     +  D V Y+ 
Sbjct: 109 KKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN----VAPDVVTYNT 164

Query: 66  RFFNVCKSQKAIKEAF----RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE- 120
               +C S K +K+A     R  +    P + T+ +L+   A+ K+S G  Q ++L+ E 
Sbjct: 165 ILRTLCDSGK-LKQAMEVLDRQLQKECYPDVITYTILIE--ATCKES-GVGQAMKLLDEM 220

Query: 121 --AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
              G K D   Y  LI    K G++D   +  + M + G +PNV T+  ++      G+ 
Sbjct: 221 RNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRW 280

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
             A      M  K   P  V FN LI    + G + RA D+L +M   +H   P+ ++  
Sbjct: 281 MDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM--PMHGCTPNSLSYN 338

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+       ++DRA E   ++           Y   +    + G  + A  + + ++ K
Sbjct: 339 PLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSK 398

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G  P  +  + +ID     GK E A ++L E + +G+   II+YSSL+   S      +A
Sbjct: 399 GCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEA 458

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           ++ +  ++ + ++P   T N+++  LC   Q  + ++ L+ M S    P   TY+IL+  
Sbjct: 459 IKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEG 518

Query: 419 CERKDDVEVGLMLLSQAKEDGVI 441
              +   +  L LL++    G++
Sbjct: 519 IAYEGLAKEALDLLNELCSRGLV 541


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 186/419 (44%), Gaps = 8/419 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + G++        +M+  GL+  D  Y +    +CK+ + + EA   F+ +      P  
Sbjct: 282 KAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADR-LNEAVELFEHMDQNKQVPCA 340

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
             +N ++     +   E A+ +L   +  G       Y  +++   + G+VD   + F E
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEE 400

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M    I PN+ TY  +ID   KAG++  A      M+   + P+ +  N ++    ++  
Sbjct: 401 MKKDAI-PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQR 459

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A  +   ++ +     PD +T  +L++     G+VD A ++Y+ +   N      VY
Sbjct: 460 LDDACSIFEGLDHKT--CRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVY 517

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  I    + G  E    +Y++M + G  PD + L+  +D    AG++E    + QE KN
Sbjct: 518 TSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKN 577

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G      SY+ L+     A    +A EL+  MK           N +I   C   ++ K
Sbjct: 578 LGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNK 637

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             ++L +MK+ G  P  +TY  ++    + D ++   ML  +AK  G+  N+V++  +I
Sbjct: 638 AYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLI 696



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 203/441 (46%), Gaps = 12/441 (2%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN +I      G+  +   LLE   RKG +     Y+    +    +  + EA + F+
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNC-ILSCLGRKGQVDEALKKFE 399

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +     P LST+N+++ +   +   E A  V   +++AGL  +      ++    K+ +
Sbjct: 400 EMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQR 459

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D    +F  + +    P+  TY +LI+G  + G+V +A+  Y  M   N  P+ VV+ +
Sbjct: 460 LDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTS 519

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    + G  +    +  EM        PD + +   M     AG++++ R +++ I  
Sbjct: 520 LIRNFFKCGRKEDGHKIYNEMLR--LGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKN 577

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                    YTI I+   + G    A  ++  M ++G + D    + +ID    +GKV  
Sbjct: 578 LGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNK 637

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A+++L+E K +G    +++Y S++   +      +A  L+E  KS  ++  V   ++LI 
Sbjct: 638 AYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLID 697

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
                 ++ +   ++ ++   GL PN  T++ LL A  + +++   L+     K+    P
Sbjct: 698 GFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTP 757

Query: 443 NLVMFKCII-GMCS-RRYEKA 461
           N + +  +I G+C  R++ KA
Sbjct: 758 NYITYSILIHGLCKIRKFNKA 778



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 145/616 (23%), Positives = 252/616 (40%), Gaps = 70/616 (11%)

Query: 18  HANYAHDVSEQLH---SYNRLIR---QGRISECID-LLEDMERKGLLDMDKVYHARFFNV 70
           +  +A  ++++ H   +YN L+    + R   C++ +LE+M   G    +        + 
Sbjct: 116 YFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSF 175

Query: 71  CKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
            KS+K ++EAF F     KL   P  S +  L+   ++S+DS+    + + +QE G   +
Sbjct: 176 IKSRK-LREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
             L+TTLI   A+ G+VDA   +  EM +  +EP+V  Y   ID   KAG+V  A+  + 
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFH 294

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M++  +  D V + ++I    ++  ++ A ++   M+       P       ++     
Sbjct: 295 EMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQV--PCAYAYNTMIMGYGM 352

Query: 247 AGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
           AG+ + A   Y ++ +   KG  P V  Y   ++C  + G  + A   +++M KK  IP+
Sbjct: 353 AGKFEDA---YSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEM-KKDAIPN 408

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
               + +ID    AGK+E A  +    K+ G+   +I+ + ++     A+    A  ++E
Sbjct: 409 LSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFE 468

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACE 420
            +     +P   T  +LI  L    ++ +  ++   M      PN + Y+ L+     C 
Sbjct: 469 GLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCG 528

Query: 421 RKDD--------------------------------VEVGLMLLSQAKEDGVIPNLVMFK 448
           RK+D                                +E G  L  + K  G IP+   + 
Sbjct: 529 RKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYT 588

Query: 449 CII------GMCSRRYEKARTLNEH--VLSFNSGRPQIENKWTS----LALMVYREAIVA 496
            +I      G     YE   T+ E   VL   +    I+    S     A  +  E    
Sbjct: 589 ILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK 648

Query: 497 GTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRA 554
           G  PTV     V+  L      D    L E        L      SLIDGFG+      A
Sbjct: 649 GHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEA 708

Query: 555 FSLLEEAASFGIVPCV 570
           + ++EE    G+ P V
Sbjct: 709 YLIMEELMQKGLTPNV 724



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 196/448 (43%), Gaps = 61/448 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL------ 86
           +RL +  R+ +   + E ++ K     D V +            + EA++ ++       
Sbjct: 452 DRLCKAQRLDDACSIFEGLDHKTCRP-DAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQ 510

Query: 87  VPNPTLSTFNMLMSV--CASSKDSEGAF-QVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +PN  + T +++ +   C   +D    + ++LRL    G   D  L  T +    K+G++
Sbjct: 511 IPNAVVYT-SLIRNFFKCGRKEDGHKIYNEMLRL----GCSPDLLLLNTYMDCVFKAGEI 565

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +    +F E+ N G  P+  +Y  LI G  KAG   +A+  +  M+ +    D   +N +
Sbjct: 566 EKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTV 625

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    +SG V++A+ +L EM  + H  +P  +T G+++   A   ++DR  E Y +    
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGH--EPTVVTYGSVIDGLA---KIDRLDEAYML---- 676

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                                       +++   KG+  + V  S+LID  G  G+++ A
Sbjct: 677 ----------------------------FEEAKSKGIELNVVIYSSLIDGFGKVGRIDEA 708

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           + I++E   +G++  + +++ L+ A   A+   +AL  ++ MK +K  P   T + LI  
Sbjct: 709 YLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHG 768

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   +  K      +M+  G  PN  TY+ ++    +  ++     L  + KE G + +
Sbjct: 769 LCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVAD 828

Query: 444 LVMFKCIIGMCS---------RRYEKAR 462
             ++  II   S         R +E+AR
Sbjct: 829 SAIYNAIIEGLSNANRASDAYRLFEEAR 856



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 132/281 (46%), Gaps = 33/281 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   ++ +L+     +  +  A+++   ++E G   D + Y T+I    KSGKV+  +++
Sbjct: 582 PDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQL 641

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G EP V TYG++IDG AK  ++ +A+  +   +SK ++ + V++++LI   G+
Sbjct: 642 LEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGK 701

Query: 210 SGAVDRAFDVLAE-MNAEVHP--------------------------------VDPDHIT 236
            G +D A+ ++ E M   + P                                  P++IT
Sbjct: 702 VGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYIT 761

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              L+       + ++A   ++ + K   K     YT  I+  ++ G+   A ++++   
Sbjct: 762 YSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFK 821

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
           +KG + D    +A+I+   +A +   A+ + +EA+ +G S+
Sbjct: 822 EKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSI 862


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 160/342 (46%), Gaps = 21/342 (6%)

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
              Q+LR V    L+ +  +Y T+I +  K    +  F+++ EMV+  I P+V+TY ALI
Sbjct: 224 APLQLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALI 283

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
           +G    G++  A G +  M S+N+ PD   FN L+ A  + G V  A + LA M  +   
Sbjct: 284 NGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQ--G 341

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           + PD +T  +LM       +V++A+ ++  +    +      Y+I IN   +    + A 
Sbjct: 342 IKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAM 401

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            ++ +M  K + P+ +  S+LID    +G++  A E+  E  ++G    II+        
Sbjct: 402 KLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIIT-------- 453

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
                      L   +K   ++P + T   LI  LC G +L     +  D+   G     
Sbjct: 454 -----------LTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITV 502

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            TY++++     K   +  + LLS+ K++  IPN V ++ II
Sbjct: 503 NTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIII 544



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 139/327 (42%), Gaps = 21/327 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L  +N ++      K    AF +   +    +  D   Y  LI      GK+     +
Sbjct: 239 PNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGL 298

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F++M +  I P+V+T+  L+D   K G+V +A     +M  + +KPD V +N+L+     
Sbjct: 299 FNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCL 358

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              V++A  +   M+     V  +  +   ++        VD+A +++K +H   I    
Sbjct: 359 VNEVNKAKSIFNTMSH--RGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNV 416

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  I+   ++G   +A  + D+M  +G  PD + L+                   ++
Sbjct: 417 ITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLT-------------------RQ 457

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K+QGI   + +Y+ L+         + A  ++E +       TV+T   +I   C+   
Sbjct: 458 LKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGL 517

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
             + M +LS MK     PN +TY I++
Sbjct: 518 FDEAMTLLSKMKDNCCIPNAVTYEIII 544



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 35/299 (11%)

Query: 42  SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNM 97
           ++  DL  +M  K +      Y+A     C   K +K+A   F  +     NP + TFN+
Sbjct: 258 NDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGK-LKDAIGLFNKMTSENINPDVYTFNI 316

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L+         + A   L ++ + G+K D   Y +L+       +V+    +F+ M + G
Sbjct: 317 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRG 376

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           +  NV +Y  +I+   K   V +A   +  M  K + P+ + +++LI    +SG +  A 
Sbjct: 377 VTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYAL 436

Query: 218 DVLAEMNAEVHP------------------VDPDHITIGALMKACANAGQVDRAREVYK- 258
               E+N E+H                   + P+  T   L+      G+++ AR +++ 
Sbjct: 437 ----ELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFED 492

Query: 259 -MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALID 312
            ++  YNI  T   YT+ I+     G ++ A ++   M     IP+    E+ + +L D
Sbjct: 493 LLVKGYNI--TVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRSLFD 549



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 86/210 (40%), Gaps = 25/210 (11%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+ +      +++   +   M  +G+    + Y       CK  K + +A + FK 
Sbjct: 348 TYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKI-KMVDQAMKLFKE 406

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEG---------------AFQVLRLVQEAGLKAD 126
           + +    P + T++ L+  +C S + S                    + R +++ G++ +
Sbjct: 407 MHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPN 466

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              YT LI    K G+++    +F +++  G    V+TY  +I G    G   +A     
Sbjct: 467 MFTYTILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLS 526

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRA 216
            M+     P+ V +  +I +   +   D+A
Sbjct: 527 KMKDNCCIPNAVTYEIIIRSLFDNDENDKA 556


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 186/404 (46%), Gaps = 46/404 (11%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+YN LIR    +    E  DL  +M  +G L     Y+   +++C+  + + +A R+  
Sbjct: 278 HTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGR-VSDARRYLD 336

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++ N    P L ++N L+   +   +   A  +   ++   L      Y TLI    ++G
Sbjct: 337 VMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTG 396

Query: 142 KVD------------------AMF-----------------EVFHEMVNAGIEPNVHTYG 166
            +D                    F                 E+F EM++ G++P+   Y 
Sbjct: 397 NLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYT 456

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
             I G  K G  +KAFG    M+++   PD + +N LI    + G  D A +++ +M  E
Sbjct: 457 TRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLE 516

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              + PDH+T  +++ A   +G + +A EV+  + K  I  +   YT+ I+  +  G  +
Sbjct: 517 --GIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLD 574

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
           FA   +D+M  KGV P+ +  +ALI        ++ A+ +  E +++G+S    +Y+ L+
Sbjct: 575 FAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILI 634

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
              SN + WQ AL+LY+ M   ++KP   T +AL+  L    +L
Sbjct: 635 NENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKDYKL 678



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 173/377 (45%), Gaps = 5/377 (1%)

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +  R F   PN    ++N+L++  +   + + A +++  +   GLK     Y  LI    
Sbjct: 231 DVMRMFGCDPNDV--SYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFC 288

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K    +   ++  EM+  G  P V TY  ++    + G+V+ A     +M ++++ PD V
Sbjct: 289 KKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLV 348

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +N LI    + G    A  + +E+ ++   + P  +T   L+      G +D A+ +  
Sbjct: 349 SYNTLIYGYSRLGNFAEALLLFSELRSK--NLVPSVVTYNTLIDGGCRTGNLDIAKGMKD 406

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + K+ +      +TI +    Q G+   A  ++D+M  +G+ PD +  +  I      G
Sbjct: 407 DMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLG 466

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
               AF + +E K +G    +I+Y+ L+       N+  A EL + M+   + P   T  
Sbjct: 467 NPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYT 526

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           ++I A      L K  EV SDM   G+ P+ +TY++L+ +   +  ++       + ++ 
Sbjct: 527 SIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDK 586

Query: 439 GVIPNLVMFKCII-GMC 454
           GV PN++ +  +I G+C
Sbjct: 587 GVSPNVITYNALIYGLC 603



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 169/359 (47%), Gaps = 2/359 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+N L+      +  E A  + R +   G       Y T++ +  + G+V         M
Sbjct: 279 TYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVM 338

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           VN  + P++ +Y  LI G ++ G  A+A   +  +RSKN+ P  V +N LI    ++G +
Sbjct: 339 VNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNL 398

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A  +  +M    H + PD +T   L++     G +  A+E++  +    +K     YT
Sbjct: 399 DIAKGMKDDMIK--HGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYT 456

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I    + G+   A  + ++M  +G  PD +  + LI+     G  + A E++Q+ + +
Sbjct: 457 TRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLE 516

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI    ++Y+S++ A   +   +KA E++  M    + P+V T   LI +     +L   
Sbjct: 517 GIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFA 576

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            +   +M+  G+ PN ITY+ L+    +++ ++V   L ++ +  GV PN   +  +I 
Sbjct: 577 KKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILIN 635



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 152/330 (46%), Gaps = 3/330 (0%)

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
           +   KL   LI   AK   ++    VF++MVN G+ P+V     ++        V +   
Sbjct: 134 EVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEE 193

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            Y +M    ++P  V FN ++ +  + G V RA +VL  M   +   DP+ ++   L+  
Sbjct: 194 VYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVM--RMFGCDPNDVSYNVLVNG 251

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
            +  G+ DRA+E+ + +    +K +   Y   I    +   +E A  +  +M  +G +P 
Sbjct: 252 LSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPT 311

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V  + ++      G+V  A   L    N+ +   ++SY++L+   S   N+ +AL L+ 
Sbjct: 312 VVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFS 371

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            ++S  L P+V T N LI   C    L     +  DM   GLCP+ +T++IL+    +  
Sbjct: 372 ELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMG 431

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKC-IIG 452
           ++ +   L  +    G+ P+ + +   I+G
Sbjct: 432 NLPMAKELFDEMLSRGLKPDCIAYTTRIVG 461



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/318 (22%), Positives = 145/318 (45%), Gaps = 24/318 (7%)

Query: 159 EPNVH----TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI-TACGQSGAV 213
           +PN H     + A++D  AK G +  A+  + + ++  VK D  V + L+   CG++  V
Sbjct: 78  QPNFHRSETAFVAILDILAKNGFMKPAY--WVMEKAIEVKVDGGVLDVLVGIGCGRNSEV 135

Query: 214 D-RAFDVLAEMNAEVHPVD---------------PDHITIGALMKACANAGQVDRAREVY 257
             +  D+L ++ A+   ++               PD      ++K   +   V+   EVY
Sbjct: 136 SVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVY 195

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            ++ K  I+ T   +   ++   + G+   A  V D M   G  P++V  + L++     
Sbjct: 196 SVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGK 255

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+ + A E++++    G+ V   +Y+ L+      + +++A +L   M      PTV T 
Sbjct: 256 GEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTY 315

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N ++ +LC   ++      L  M +  L P+ ++Y+ L+    R  +    L+L S+ + 
Sbjct: 316 NTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRS 375

Query: 438 DGVIPNLVMFKCII-GMC 454
             ++P++V +  +I G C
Sbjct: 376 KNLVPSVVTYNTLIDGGC 393


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 164/367 (44%), Gaps = 3/367 (0%)

Query: 86  LVPNPTLSTFNMLMSVCA-SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           L P P     N+L  V      + E ++     V ++G   +   +  L+    K G V 
Sbjct: 100 LFPVPVQGCENLLRRVVRLRPVELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVG 159

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           +   VF E+   G+ P V ++  LI GC KAG V + F   G+M S+ V PD   F+ALI
Sbjct: 160 SARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALI 219

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G +D    +  EM  +   + P+ +T   L+      G+VD A + ++M+    
Sbjct: 220 NGLCKEGRLDEGSLLFDEMCGK--GLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQG 277

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           ++     Y   IN   + GD + A  + ++M+  G+ PD +  + LID     G +E+A 
Sbjct: 278 VRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESAL 337

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           EI +    +GI +  ++++ L+           A  +   M S   KP   T   ++   
Sbjct: 338 EIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCF 397

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C    +    ++L +M+S G  P  +TY+ L+    ++  V+   MLL      GV PN 
Sbjct: 398 CKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPND 457

Query: 445 VMFKCII 451
           + +  ++
Sbjct: 458 ITYNILL 464



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 132/293 (45%), Gaps = 14/293 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P 88
           N L ++GR+ E   L ++M  KGL+     +       CK  K +  A + F+++     
Sbjct: 220 NGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGK-VDLALKNFQMMLAQGV 278

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+N L++      D + A +++  +  +GL+ D   +TTLI  C K G +++  E
Sbjct: 279 RPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALE 338

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   MV  GIE +   +  LI G  + G+V  A      M S   KPD   +  ++    
Sbjct: 339 IKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFC 398

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V   F +L EM ++ H   P  +T  ALM      GQV  A+ +   +    +   
Sbjct: 399 KKGNVXMGFKLLKEMQSDGHV--PGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPN 456

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDM--TKKGVIPDEVFLSALIDFAGHAGK 319
              Y I +   S+ G      SV  D+  ++KG++ D    +AL++ +    K
Sbjct: 457 DITYNILLEGHSKHGS-----SVDVDIFNSEKGLVKDYASYTALVNESSKTSK 504



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 9/199 (4%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V   L +YN LI    + G + E   L+ +M   GL   D++      + C     +
Sbjct: 275 AQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRP-DRITFTTLIDGCCKYGDM 333

Query: 78  KEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + A    + +    +      F +L+S          A ++LR +  AG K D   YT +
Sbjct: 334 ESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMV 393

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    K G V   F++  EM + G  P V TY AL++G  K GQV  A      M +  V
Sbjct: 394 VDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGV 453

Query: 194 KPDRVVFNALITACGQSGA 212
            P+ + +N L+    + G+
Sbjct: 454 APNDITYNILLEGHSKHGS 472



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 40/215 (18%)

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---- 346
           V+D++ K+G+ P  V  + LI     AG VE  F +    +++ +   + ++S+L+    
Sbjct: 164 VFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLC 223

Query: 347 --------------------------------GACSNAKNWQKALELYEHMKSIKLKPTV 374
                                           G C   K    AL+ ++ M +  ++P +
Sbjct: 224 KEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGK-VDLALKNFQMMLAQGVRPDL 282

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T NALI  LC    L +   ++++M + GL P+ IT++ L+  C +  D+E  L +  +
Sbjct: 283 VTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRR 342

Query: 435 AKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNE 466
             E+G+  + V F  +I G+C   R ++  R L +
Sbjct: 343 MVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRD 377



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 29/235 (12%)

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           ++E ++    E  + G       ++ LM           A  +++ +    L+PTV + N
Sbjct: 122 ELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFN 181

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI+  C    + +   +   M+S  +CP+  T+S L+    ++  ++ G +L  +    
Sbjct: 182 TLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGK 241

Query: 439 GVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 497
           G++PN V F  +I G C                   G+         LAL  ++  +  G
Sbjct: 242 GLVPNGVTFTVLIDGQCK-----------------GGK-------VDLALKNFQMMLAQG 277

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRE--RLVENLGVSADALKRSNLCSLIDGFGEY 550
             P +   + ++    L    D++E  RLV  +  S     R    +LIDG  +Y
Sbjct: 278 VRPDLVTYNALIN--GLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKY 330


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 200/459 (43%), Gaps = 52/459 (11%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G+    +++++DM R  +      Y+    N C S    KEA    K 
Sbjct: 187 TYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYN-NLINACGSSGNWKEALNVCKK 245

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P L T N++++   S      A     L++   ++ D   +  +I    K  +
Sbjct: 246 MTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQ 305

Query: 143 VDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            D   ++F+ M     E  P+V T+ ++I   +  G +     A+ +M ++ +KP+ V +
Sbjct: 306 YDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSY 365

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           NAL+ A    G  + A  V  E+  + +   PD ++  +L+ A   + +  +ARE++KMI
Sbjct: 366 NALLGAYAARGMENEALQVFNEI--KQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMI 423

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            + N+K     Y   I+     G  E A  +  +M +  + P+ V +  L+   G  G+ 
Sbjct: 424 KRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQK 483

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
                +L  A+ +GI +  ++Y+S +G+  N   + KA++LY  M+  K+K    T   L
Sbjct: 484 VKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVL 543

Query: 381 ITALCD----GD-----------QLPKTMEVLSD------------------------MK 401
           I+  C     G+           +LP + EV S                         MK
Sbjct: 544 ISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEAESTFNLMK 603

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           SLG  P+ +TY+ +L A    +  E    L  + +E+ V
Sbjct: 604 SLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDV 642



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 201/441 (45%), Gaps = 31/441 (7%)

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
           A   +Y  +I   A+  + D    +F EM     +P+  TY ALI+   +AGQ   A   
Sbjct: 148 ARTDIYNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNI 207

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
              M    + P R  +N LI ACG SG    A +V  +M    + V PD +T   ++ A 
Sbjct: 208 MDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTD--NGVGPDLVTHNIMLTAF 265

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIP 302
            +  Q  +A   +++I   +I+     + I I+C  +   ++ A  +++ M +K     P
Sbjct: 266 KSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHP 325

Query: 303 DEVFLSALIDF---AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           D V  +++I      GH    EAAF ++     +G+   I+SY++L+GA +      +AL
Sbjct: 326 DVVTFTSMIHLYSVCGHIENCEAAFNMMLA---EGLKPNIVSYNALLGAYAARGMENEAL 382

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           +++  +K    +P V +  +L+ A     +  K  E+   +K   L PN ++Y+ L+ A 
Sbjct: 383 QVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAY 442

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIE 479
                +E  + +L + ++D + PN+V    ++  C R  +K +   + VLS        E
Sbjct: 443 GSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKI--DTVLS------AAE 494

Query: 480 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN 539
            +   L  + Y  AI  G+   V    K +      YN+ +R++ +++  V+   L    
Sbjct: 495 MRGIKLNTVAYNSAI--GSYINVGEYDKAIDL----YNS-MRKKKIKSDSVTYTVLISG- 546

Query: 540 LCSLIDGFGEYDPRAFSLLEE 560
            C  +  FGE    A S +EE
Sbjct: 547 -CCKMSKFGE----ALSFMEE 562



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 167/361 (46%), Gaps = 6/361 (1%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +NM++ + A    ++ A  +   +Q+   K D + Y  LI    ++G+      +  +M+
Sbjct: 153 YNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDML 212

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            A I P+  TY  LI+ C  +G   +A      M    V PD V  N ++TA        
Sbjct: 213 RAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYS 272

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--Y 272
           +A     E+    H + PD  T   ++       Q D+A +++  + +   +  P+V  +
Sbjct: 273 KALSYF-ELIKGTH-IRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTF 330

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  I+  S  G  E   + ++ M  +G+ P+ V  +AL+      G    A ++  E K 
Sbjct: 331 TSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQ 390

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G    ++SY+SL+ A   ++  QKA E+++ +K   LKP + + NALI A      L  
Sbjct: 391 NGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLED 450

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +E+L +M+   + PN ++   LL AC R    V++   +LS A+  G+  N V +   I
Sbjct: 451 AIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKID-TVLSAAEMRGIKLNTVAYNSAI 509

Query: 452 G 452
           G
Sbjct: 510 G 510



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 167/368 (45%), Gaps = 44/368 (11%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T ++   L SVC   ++ E AF ++      GLK +   Y  L+   A  G  +   +VF
Sbjct: 329 TFTSMIHLYSVCGHIENCEAAFNMM---LAEGLKPNIVSYNALLGAYAARGMENEALQVF 385

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           +E+   G  P+V +Y +L++   ++ +  KA   + +++  N+KP+ V +NALI A G +
Sbjct: 386 NEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSN 445

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA------------------------- 245
           G ++ A ++L EM  E   + P+ ++I  L+ AC                          
Sbjct: 446 GLLEDAIEILREM--EQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTV 503

Query: 246 ----------NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
                     N G+ D+A ++Y  + K  IK     YT+ I+ C +   +  A S  ++M
Sbjct: 504 AYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEM 563

Query: 296 TK-KGVIPDEVFLSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
              K  +  EV+ S +  ++  A   G++  A       K+ G S  +++Y++++ A + 
Sbjct: 564 MHLKLPMSKEVYSSIICAYSKQASALGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNA 623

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A+ W+K   L+E M+   +K       AL+ A   G Q  + + +   M+   +  +   
Sbjct: 624 AEKWEKLYALFEEMEENDVKLDTIACAALMRAFNKGGQPGRVLSLAQSMREKDIPLSDTI 683

Query: 412 YSILLVAC 419
           +  ++ AC
Sbjct: 684 FFEMVSAC 691



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/407 (20%), Positives = 173/407 (42%), Gaps = 15/407 (3%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + SYN L+     +G  +E + +  ++++ G    D V +    N     +  
Sbjct: 355 AEGLKPNIVSYNALLGAYAARGMENEALQVFNEIKQNGFRP-DVVSYTSLLNAYGRSRKP 413

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           ++A   FK++      P + ++N L+    S+   E A ++LR +++  +  +     TL
Sbjct: 414 QKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTL 473

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +  C + G+   +  V       GI+ N   Y + I      G+  KA   Y  MR K +
Sbjct: 474 LAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKI 533

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT--IGALMKACANAGQVD 251
           K D V +  LI+ C +      A   + EM     P+  +  +  I A  K  +  GQ+ 
Sbjct: 534 KSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQII 593

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A   + ++           YT  ++  +    WE   +++++M +  V  D +  +AL+
Sbjct: 594 EAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACAALM 653

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                 G+      + Q  + + I +    +  ++ AC    +W+ A+++ ++M+     
Sbjct: 654 RAFNKGGQPGRVLSLAQSMREKDIPLSDTIFFEMVSACGLLHDWKTAVDMIKYMEPS--L 711

Query: 372 PTVST--MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           P +S+  +N  + +L    ++   +++   M + G   N  TYSILL
Sbjct: 712 PVISSGCLNLFLNSLGKSGKIEIMLKLFFKMLASGAEVNFNTYSILL 758



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 152/350 (43%), Gaps = 31/350 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN LI      G + + I++L +ME+      DK+ H    ++C    A     +  K+
Sbjct: 434 SYNALIDAYGSNGLLEDAIEILREMEQ------DKI-HPNVVSICTLLAACGRCGQKVKI 486

Query: 87  VPNPTLSTFNM----LMSVCASSK--------DSEGAFQVLRLVQEAGLKADCKLYTTLI 134
             +  LS   M    L +V  +S         + + A  +   +++  +K+D   YT LI
Sbjct: 487 --DTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVLI 544

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA----GQVAKAFGAYGIMRS 190
           + C K  K         EM++  +  +   Y ++I   +K     GQ+ +A   + +M+S
Sbjct: 545 SGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEAESTFNLMKS 604

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
               PD V + A++ A   +   ++ + +  EM  E + V  D I   ALM+A    GQ 
Sbjct: 605 LGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEM--EENDVKLDTIACAALMRAFNKGGQP 662

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
            R   + + + + +I  +  ++   ++ C    DW+ A  +   M     +     L+  
Sbjct: 663 GRVLSLAQSMREKDIPLSDTIFFEMVSACGLLHDWKTAVDMIKYMEPSLPVISSGCLNLF 722

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
           ++  G +GK+E   ++  +    G  V   +YS L+    ++ NW+K LE
Sbjct: 723 LNSLGKSGKIEIMLKLFFKMLASGAEVNFNTYSILLKNLLSSGNWRKYLE 772



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 152/348 (43%), Gaps = 42/348 (12%)

Query: 240 LMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           L++     G ++    V+  M ++ N     ++Y + I   ++    + A  ++ +M K 
Sbjct: 120 LIRELTQRGSIEHCNLVFSWMKNQKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKC 179

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
              PD    +ALI+  G AG+   A  I+ +     I     +Y++L+ AC ++ NW++A
Sbjct: 180 RCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEA 239

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-- 416
           L + + M    + P + T N ++TA   G Q  K +     +K   + P+T T++I++  
Sbjct: 240 LNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHC 299

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM---------CSRRYEK--ARTLN 465
           +   ++ D  V +    + K+    P++V F  +I +         C   +    A  L 
Sbjct: 300 LVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLK 359

Query: 466 EHVLSFNS-----GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADI 520
            +++S+N+         +EN+    AL V+ E    G  P V   + +L       NA  
Sbjct: 360 PNIVSYNALLGAYAARGMENE----ALQVFNEIKQNGFRPDVVSYTSLL-------NAYG 408

Query: 521 RERLVENLGVSADALKRSNL-------CSLIDGFGEYDPRAFSLLEEA 561
           R R  +        +KR+NL        +LID +G     +  LLE+A
Sbjct: 409 RSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYG-----SNGLLEDA 451


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 205/433 (47%), Gaps = 23/433 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDM-ERKGLLDMDKVYHARFFN-VCKSQK 75
           A D+   + SYN L+    +  R  E  +L+ DM  R G    D V ++   +  CK+ K
Sbjct: 38  ARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGK 97

Query: 76  AIKEAFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            ++E+    K      L P+  + T  ++ S+C S++  E    +  +++ AG       
Sbjct: 98  -VEESRELLKEVISRGLRPDALMYT-KVVASLCKSARLGEALELLEEMIR-AGCCPTLIT 154

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           + TLI+ C +   ++    +  +M  +G++ +V TY  L+DG  KAG++ +A      M+
Sbjct: 155 FNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMK 214

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           +    PD V +++ +    +SG V  A  VL +M    H  DP+ +T   ++     +G+
Sbjct: 215 ASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHH--DPNVVTYNTILDGLCKSGK 272

Query: 250 VDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           +D A E+ + +   +  G   V Y+  ++   + G  + A SV + M + G  PD V  S
Sbjct: 273 IDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYS 332

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           +L++    AGK+E A E ++E   +G     ++Y SL+    +     +A  + E M S 
Sbjct: 333 SLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSG 392

Query: 369 KLK-----PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
                   P+VST NALI  LC   ++   ++    M+S G  P+ ++YS ++    R  
Sbjct: 393 GGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSG 452

Query: 424 DVEVGLMLLSQAK 436
                 M+LS+ +
Sbjct: 453 RALQAEMILSEVR 465



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 154/329 (46%), Gaps = 4/329 (1%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G  PN  T+ AL++G +K G+          M +++++P+ V +N L+    +   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              A +++ +M +      PD +T   L+     AG+V+ +RE+ K +    ++    +Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  +    ++     A  + ++M + G  P  +  + LI        +E A  +LQ+   
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAA 180

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+   +++Y++LM     A   Q+A +L E MK+    P V   ++ +  LC   ++  
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLD 240

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ-AKEDGVIPNLVMFKCII 451
             +VL  M+     PN +TY+ +L    +   ++  L ++ Q A  DG   N+V +  ++
Sbjct: 241 AHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVV 300

Query: 452 -GMCS-RRYEKARTLNEHVLSFNSGRPQI 478
            G+C   R ++AR++ E  ++    RP +
Sbjct: 301 DGLCKLGRTQEARSVME-AMARAGCRPDV 328



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 150/330 (45%), Gaps = 8/330 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGI 187
           +  L+   +K G+      +   M    I+PNV +Y  L++G  K  +   A+      I
Sbjct: 13  FNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMI 72

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
            R     PD V ++ L++   ++G V+ + ++L E+ +    + PD +    ++ +   +
Sbjct: 73  SRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVIS--RGLRPDALMYTKVVASLCKS 130

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
            ++  A E+ + + +     T   +   I+ C +  + E A S+   M   GV  D V  
Sbjct: 131 ARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTY 190

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMK 366
           + L+D    AG+++ A ++L+  K  G +  +++YSS + G C + K    A ++ E M+
Sbjct: 191 NTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLD-AHQVLEQMR 249

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDV 425
                P V T N ++  LC   ++   +E++  M S   C  N + YS ++    +    
Sbjct: 250 DSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRT 309

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +    ++      G  P++V +  ++ G+C
Sbjct: 310 QEARSVMEAMARAGCRPDVVTYSSLVNGLC 339


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 172/402 (42%), Gaps = 39/402 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T+N+++    +  D + A  +   ++  G+  D   Y+TL++  AK  ++D   ++
Sbjct: 156 PNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDL 215

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALITACG 208
             EM N G++ +   Y AL+ GC + G   KA   +  ++R     P+   +  ++    
Sbjct: 216 LDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLC 275

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G    A +V + M A  H  D   +T G L+     +G VD A  VY  + K  +   
Sbjct: 276 KLGRFKEAGEVWSRMMANNHQADT--VTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLD 333

Query: 269 PEVYTIAINCCSQTGD----WEF----------ACSVYDDMTK----KGVI--------- 301
             VY   I    + G     W+F            + Y+ MTK     G++         
Sbjct: 334 VSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATELLKQ 393

Query: 302 --------PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
                   PD+V    LI      G    AFEIL++A+N G  + + SYSS++       
Sbjct: 394 LENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDG 453

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
               A E+Y++M     KP     NALI   C   ++   +++  +M S G CP  ITY+
Sbjct: 454 RTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYN 513

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            L+    + +  +    L  +  E G  P++  +  +I G+C
Sbjct: 514 TLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLC 555



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 123/531 (23%), Positives = 210/531 (39%), Gaps = 85/531 (16%)

Query: 18  HANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H  +   ++  L +YN ++R    +G +   + L   + R+G+   D+V ++   +    
Sbjct: 147 HGAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAP-DRVTYSTLMSGLAK 205

Query: 74  QKAIKEAFRFFKLVPNPTLST----FNMLMSVCASSKDSEGAFQVL-RLVQEAG------ 122
              +  A      +PN  +      +N L+S C  +   E A +V  +LV++ G      
Sbjct: 206 HDQLDNALDLLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLA 265

Query: 123 -----LKADCKL------------------------YTTLITTCAKSGKVDAMFEVFHEM 153
                L   CKL                        Y  LI    +SG VD+   V+ +M
Sbjct: 266 TYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDM 325

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAF--------------GAYGIM----------- 188
           V AG+  +V  Y +LI G  + G+  +A+                Y IM           
Sbjct: 326 VKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVS 385

Query: 189 ----------RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
                        +  PD+V F  LI    ++G  +RAF++L +  A     + D  +  
Sbjct: 386 EATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILED--ARNSGEELDVFSYS 443

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           +++      G+   A EVYK + K   K    VY   IN   +      A  +Y +MT  
Sbjct: 444 SMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSN 503

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G  P  +  + LID    A K + A  + +E   +G    I +Y+SL+      K    A
Sbjct: 504 GCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVA 563

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           L +++ +    L+  V   N LI  LC   ++ +   +  +MK     PN +TY+ L+  
Sbjct: 564 LRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDG 623

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMCS--RRYEKARTLNE 466
                 ++    L +   ++G+ P++V +   I G+CS  R  E    LNE
Sbjct: 624 FYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNE 674



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 179/397 (45%), Gaps = 7/397 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---T 91
           L R G +     +  DM + GL+    VY++     C+  +   EA++F+          
Sbjct: 309 LCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRT-GEAWKFWDSTGFSGIRQ 367

Query: 92  LSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++T+N M   +  S   SE    + +L  +A    D   + TLI    ++G  +  FE+ 
Sbjct: 368 ITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEIL 427

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +  N+G E +V +Y ++I+   K G+   A   Y  M     KP+  V+NALI    + 
Sbjct: 428 EDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRV 487

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             ++ A  +  EM +  +   P  IT   L+     A +   A  + K + +   K    
Sbjct: 488 SKINDAIKIYIEMTS--NGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIR 545

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   I    +    + A  ++D++   G+  D +  + LI     AGKV+ AF I  E 
Sbjct: 546 TYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEM 605

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K +  S  +++Y++LM       +  KA  L+  +    LKP + T N  I  LC  ++ 
Sbjct: 606 KEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRT 665

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
           P+ + +L+++ + G+ P  IT+SIL+ A  +   +++
Sbjct: 666 PEGVLLLNEVLATGIMPTVITWSILVRAVIKYGPIQI 702



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/440 (21%), Positives = 174/440 (39%), Gaps = 90/440 (20%)

Query: 144 DAMF-EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           DA F  + H      I PN+ TY  ++      G V +A   +  +R + V PDRV ++ 
Sbjct: 139 DAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYST 198

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-------- 254
           L++   +   +D A D+L EM    + V  D +   AL+  C   G  ++A         
Sbjct: 199 LMSGLAKHDQLDNALDLLDEMPN--YGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVR 256

Query: 255 ----------------------------EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
                                       EV+  +   N +     Y I I+   ++GD +
Sbjct: 257 DPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVD 316

Query: 287 FACSVYDDMTKKGVIPDEVFLSALID-------------------FAG------------ 315
            A  VY DM K G++ D    ++LI                    F+G            
Sbjct: 317 SAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTK 376

Query: 316 ---HAGKVEAAFEILQEAKNQG-ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKL 370
               +G V  A E+L++ +N    S   +++ +L+ G C N     +A E+ E  ++   
Sbjct: 377 GLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYA-NRAFEILEDARNSGE 435

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           +  V + +++I   C   +     EV  +M   G  PN+  Y+ L+    R   +   + 
Sbjct: 436 ELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIK 495

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI---------- 478
           +  +   +G  P ++ +  +I G+C + +Y++A +L + +L     +P I          
Sbjct: 496 IYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLE-RGFKPDIRTYASLIRGL 554

Query: 479 -ENKWTSLALMVYREAIVAG 497
             +K   +AL ++ E + AG
Sbjct: 555 CRDKKVDVALRIWDEILDAG 574



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 134/301 (44%), Gaps = 30/301 (9%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           + Y I +      GD + A S++  + ++GV PD V  S L+       +++ A ++L E
Sbjct: 159 QTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDE 218

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVSTMNALITALCDGD 388
             N G+    + Y++L+  C     ++KA++++E + +     P ++T   ++  LC   
Sbjct: 219 MPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLG 278

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  +  EV S M +     +T+TY IL+    R  DV+    + S   + G++ ++ ++ 
Sbjct: 279 RFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYN 338

Query: 449 CII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 507
            +I G C    E  RT             +    W S      R+      I T  +++K
Sbjct: 339 SLIKGFC----EVGRT------------GEAWKFWDSTGFSGIRQ------ITTYNIMTK 376

Query: 508 -VLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE--YDPRAFSLLEEAASF 564
            +L    +    ++ ++L  +   S D   +    +LI G  E  Y  RAF +LE+A + 
Sbjct: 377 GLLDSGMVSEATELLKQLENDASCSPD---KVTFGTLIHGLCENGYANRAFEILEDARNS 433

Query: 565 G 565
           G
Sbjct: 434 G 434



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALITALCDGDQ 389
           G + G+ S+++L+ A   A+ +  A   +  +       ++ P + T N ++ +LC    
Sbjct: 114 GCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGD 173

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + + + + S ++  G+ P+ +TYS L+    + D ++  L LL +    GV  + V +  
Sbjct: 174 VDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYGVQADAVCYNA 233

Query: 450 IIGMCSRR--YEKARTLNEHVLSFNSGRPQI 478
           ++  C R   +EKA  + E ++      P +
Sbjct: 234 LLSGCFRTGMFEKAMKVWEQLVRDPGASPNL 264


>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
          Length = 1095

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 196/457 (42%), Gaps = 40/457 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RFFKLVPN 89
           N  +++GR    + +L+DME+ G+      Y+     +CK +++ +      R  ++   
Sbjct: 272 NWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLT 331

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   ++N L+           A  +   +    LK     YT LI    ++G+ D    V
Sbjct: 332 PDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRV 391

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            +EM   G+ P+  TY AL++G  K  ++  A      +RS+++  +R ++  LI    Q
Sbjct: 392 LYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQ 451

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V +A  +L  M A+   +DPD IT  AL+      G +   +E+   + K  +    
Sbjct: 452 LGEVSKAKQILKCMLAD--GIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNN 509

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +YT  +    + G  + A   + D+ + G++ + V  +AL+      G +  A +  Q 
Sbjct: 510 VLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQY 569

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                IS  + S++ ++ +     N  +A  +Y++M      P + T  +L+  LC G  
Sbjct: 570 MSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGH 629

Query: 390 LPKTMEVLS---------DMKSL-----GLC---------------------PNTITYSI 414
           L +  E +          D K+L     G+C                     P+T TY+I
Sbjct: 630 LVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTI 689

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           LL    ++  V   L+LL    E G++P+ + + C++
Sbjct: 690 LLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLL 726



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 182/413 (44%), Gaps = 29/413 (7%)

Query: 37   RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-----LVPNPT 91
            + G + E +DL E M  + +L     Y       CK  K +             LVP+ T
Sbjct: 661  KHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPD-T 719

Query: 92   LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
            ++   +L  +    +    ++    ++ + GL ADC  Y +++    K G+++ +  +  
Sbjct: 720  IAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMR 779

Query: 152  EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
             M    + P+  +Y  L+ G  K GQ+++    Y  M  + +KPD V +  LI    + G
Sbjct: 780  NMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYG 839

Query: 212  AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             ++ A   L +M  E   V PD++    L+KA +   ++  A +++  +           
Sbjct: 840  LIEIAVKFLEKMVLE--GVFPDNLAFDILIKAFSEKSKMSNALQLFSYM----------- 886

Query: 272  YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
                       GD + A  + +DM   GV+P EV  S+++      GKVE A  +     
Sbjct: 887  --------KWVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIM 938

Query: 332  NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
              G+   I ++++LM G C   K    A  L + M+S  LK  V T N LIT LC+   +
Sbjct: 939  RAGMVPTIATFTTLMHGLCKEFK-IDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCI 997

Query: 391  PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
               +++  +MKS GL PN  TY  L  A      ++ G  LL   ++ G++P+
Sbjct: 998  CDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPS 1050



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 126/581 (21%), Positives = 238/581 (40%), Gaps = 87/581 (14%)

Query: 33   NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
            N + + G I E  ++L  M++ G+L  + +Y    F  CK+  A KEA ++F  +    L
Sbjct: 482  NGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHA-KEALKYFVDIYRSGL 540

Query: 93   STFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
               +++ +    S   EG    A Q  + +    +  D   +  +I +  + G V   F 
Sbjct: 541  VANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFS 600

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKNVKPDRVVFNALITA 206
            V+  MV  G  P++ TYG+L+ G  + G +  AK F  Y  +  K    D    N L+  
Sbjct: 601  VYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVY--LLEKACAIDEKTLNTLLVG 658

Query: 207  CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
              + G +D A D+  +M      + PD  T   L+      G+V  A  + +M       
Sbjct: 659  ICKHGTLDEALDLCEKM--VTRNILPDTYTYTILLDGFCKRGKVVPALILLQM------- 709

Query: 267  GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                                        M +KG++PD +  + L++   + G+V+AA  +
Sbjct: 710  ----------------------------MLEKGLVPDTIAYTCLLNGLVNEGQVKAASYM 741

Query: 327  LQEAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
             QE    +G+    I+Y+S+M          +   L  +M   ++ P+ ++ N L+    
Sbjct: 742  FQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYI 801

Query: 386  DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               QL +T+ +  DM   G+ P+ +TY +L+        +E+ +  L +   +GV P+ +
Sbjct: 802  KKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNL 861

Query: 446  MFKCIIGMCSRRYEKARTLNEHVLSFNS------GRPQIENKWTSL-------------- 485
             F  +I   S + + +  L   + S+        G  +++    +L              
Sbjct: 862  AFDILIKAFSEKSKMSNAL--QLFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSIVR 919

Query: 486  ----------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR---ERLVENLGVSA 532
                      A++V+   + AG +PT+   + ++  L   +  D     ++L+E+ G+  
Sbjct: 920  GLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKV 979

Query: 533  DALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCVS 571
            D +  +    LI G         A  L EE  S G++P ++
Sbjct: 980  DVVTYN---VLITGLCNKKCICDALDLYEEMKSKGLLPNIT 1017



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 155/366 (42%), Gaps = 50/366 (13%)

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKL-----YTTLITTCAKSGKVDA 145
           ++T N+++ S+C   K S+    + ++        +C+L     Y T++    K G+  +
Sbjct: 230 VTTCNIVLNSLCTQGKLSKAESMLQKM-------KNCRLPNAVTYNTILNWYVKKGRCKS 282

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              +  +M   GIE +++TY  +ID   K  + A+A+     MR  N+ PD   +N LI 
Sbjct: 283 ALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIH 342

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
                G ++ A  +  +M  +   + P   T  AL+      G+ D AR V         
Sbjct: 343 GFFGEGKINLAIYIFNQMLRQ--SLKPSVATYTALIDGYCRNGRTDEARRV--------- 391

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                +Y + I                      GV P E+  SAL++      K+  A +
Sbjct: 392 -----LYEMQIT---------------------GVRPSELTYSALLNGYCKHSKLGPALD 425

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +++  +++ IS+    Y+ L+          KA ++ + M +  + P V T +ALI  +C
Sbjct: 426 LIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALINGMC 485

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               + +T E+LS M+  G+ PN + Y+ L+    +    +  L         G++ N V
Sbjct: 486 KMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSV 545

Query: 446 MFKCII 451
           +   ++
Sbjct: 546 IHNALL 551



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 166/408 (40%), Gaps = 42/408 (10%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCA 103
           L E ++RK  LD+         N   +Q  + +A    + + N   P   T+N +++   
Sbjct: 218 LKESLDRKFPLDVTTC--NIVLNSLCTQGKLSKAESMLQKMKNCRLPNAVTYNTILNWYV 275

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
                + A ++L  +++ G++AD   Y  +I    K  +    + +   M    + P+  
Sbjct: 276 KKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDEC 335

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           +Y  LI G    G++  A   +  M  +++KP    + ALI    ++G  D A  VL EM
Sbjct: 336 SYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEM 395

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
             ++  V P  +T  AL+       ++  A ++ K +   +I     +YTI I+   Q G
Sbjct: 396 --QITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDGFCQLG 453

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           +   A  +   M   G+ PD +  SALI+     G +    EIL   +  G+    + Y+
Sbjct: 454 EVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYT 513

Query: 344 SLMGACSNAKNWQKALELY-----------------------------------EHMKSI 368
           +L+     A + ++AL+ +                                   ++M  +
Sbjct: 514 TLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRM 573

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           K+   V++ N +I + C    + +   V  +M   G  P+  TY  LL
Sbjct: 574 KISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLL 621


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 164/352 (46%), Gaps = 12/352 (3%)

Query: 111 AFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           A QV R +QE  L+ + K +   T+I+   + GK+    E+F  M  AG+ P+VH Y AL
Sbjct: 13  ALQVFRFLQEH-LEYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTAL 71

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV--LAEMNAE 226
           + G AK G + +A+  +  M+ K   P+ + +N LI AC       RA+ +  L  +  E
Sbjct: 72  LSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLINAC-----TKRAYRLPDLVGLFEE 126

Query: 227 VHP--VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
           +    V P+ IT   ++ AC      D A ++ K +   N       YT  IN   ++G 
Sbjct: 127 MKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRSGR 186

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            + A  ++++M + G  P+    ++L+      G+ E A  +    +++G    + +Y++
Sbjct: 187 LDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNT 246

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           ++  C     + +A  ++  M+     P   T N ++ A     +  +  ++L  MK  G
Sbjct: 247 VIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAG 306

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             P+  TY+ILL A  +       + +  + K  G  PNLV F  +I M  R
Sbjct: 307 CTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGR 358



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 146/341 (42%), Gaps = 22/341 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  +H+Y  L+    +QG + E   L E M+ KG       Y+    N C      K A
Sbjct: 61  VAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNT-LINAC-----TKRA 114

Query: 81  FRFFKLVP----------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           +R   LV            P   T+N +++ C      + A Q+L+ ++      +   Y
Sbjct: 115 YRLPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISY 174

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           TT+I +  +SG++D   E+F EM   G  PN  TY +L+   A+ G+  KA   +  M  
Sbjct: 175 TTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMED 234

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           +   PD   +N +I  CG+ G    A  V  EM  +     PD +T   ++ A +   + 
Sbjct: 235 EGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRK--GCTPDRVTYNTMLDAYSKWSRR 292

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
            RAR++ K + +         Y I ++   + G    A  ++ ++   G  P+ V  SAL
Sbjct: 293 GRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSAL 352

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           I+  G  G  E A     E +  G      +Y  LM + S+
Sbjct: 353 INMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSH 393



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 96/259 (37%), Gaps = 34/259 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L R GR+ E ++L E+M+  G                                 +P  
Sbjct: 179 NSLGRSGRLDEAVELFEEMKELG--------------------------------RSPNS 206

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+N L+   A     E A  +   +++ G   D   Y T+I  C + G       VF E
Sbjct: 207 WTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGLFAEAEGVFLE 266

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G  P+  TY  ++D  +K  +  +A      M+     PD   +N L+ A G++G+
Sbjct: 267 MQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGS 326

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              A  +  E+ A  H   P+ ++  AL+      G  + A   +  +           Y
Sbjct: 327 ASEAMQIFHELKAAGH--SPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPNATAY 384

Query: 273 TIAINCCSQTGDWEFACSV 291
              +N  S  G ++  C +
Sbjct: 385 CGLMNSYSHHGMYKVLCCI 403



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 9/189 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R+GR  + + L   ME +G +  D   +    ++C       EA   F  
Sbjct: 208 TYNSLLKAYAREGRYEKAMCLFVGMEDEGCIP-DLYTYNTVIDMCGRGGLFAEAEGVFLE 266

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+N ++   +       A  +L+ ++ AG   D   Y  L+    K+G 
Sbjct: 267 MQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGS 326

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                ++FHE+  AG  PN+ ++ ALI+   + G   +A  A+  MR+    P+   +  
Sbjct: 327 ASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCG 386

Query: 203 LITACGQSG 211
           L+ +    G
Sbjct: 387 LMNSYSHHG 395


>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 169/399 (42%), Gaps = 37/399 (9%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           PN  L      ++V  +S+       V+++V E GL+ D +    ++    +     A  
Sbjct: 143 PNDILHNLAKAVAVRVASEKLNSDEDVMKIVNETGLRVDVRSMNVVVWQLGQMQNWYAAT 202

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +VF    +AG+EPN +    LI       ++++A   +  M    ++     FNAL+ AC
Sbjct: 203 KVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALKLFRWMEKAGIERPIFTFNALMVAC 262

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM-------- 259
           G+  + D A ++  EM  E   + PD IT   L+ A   AG  DRA+    M        
Sbjct: 263 GRCASGDTAVELFEEM--EKLGIVPDRITFTGLVSATTAAGLWDRAQSFIDMMQARGFSI 320

Query: 260 -IHKY--------NIKGTPEVYTI-----------------AINCC-SQTGDWEFACSVY 292
            +H+Y          +   E Y +                 A+ C   +T  WE A   +
Sbjct: 321 GLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRTF 380

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
             +  KG+ PD +  S+LI    +AG+ E A E+L+  K       ++S+  L+ A    
Sbjct: 381 IWIQDKGLTPDVMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKT 440

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            NW+KA E++  M      P      +L++A   G Q  K +  +  ++ LG+  + + +
Sbjct: 441 GNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAW 500

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           S  + A  +    E+      Q  + G +PN+V +  +I
Sbjct: 501 STTISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLI 539



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 170/385 (44%), Gaps = 7/385 (1%)

Query: 75  KAIKEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           + + +A + F+ +    +     TFN LM  C      + A ++   +++ G+  D   +
Sbjct: 231 RRLSQALKLFRWMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITF 290

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T L++    +G  D        M   G    +H Y  +   CA+A +  +A+G + +M  
Sbjct: 291 TGLVSATTAAGLWDRAQSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLE 350

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           +  +     +NAL+ A  ++   + A      +  +   + PD ++  +L+ ACANAGQ 
Sbjct: 351 QGYELKLESYNALLCAYERTAQWEDAMRTFIWIQDK--GLTPDVMSWSSLISACANAGQA 408

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           +RA EV + +   + +     +   +    +TG+WE A  ++  M   G  P+EV   +L
Sbjct: 409 ERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAWCSL 468

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           +       + +     +++ +  G+ + ++++S+ + A + A  W+ A E ++ M     
Sbjct: 469 LSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKAGQWELAEEKFKQMTKSGC 528

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE-VGL 429
            P + T ++LI A  D     K   V   M  +G+ PN      LL A  +  ++E V +
Sbjct: 529 LPNIVTYSSLIKAYGDVGLWEKAESVFKLMLRVGIRPNPQACCALLRAYGKGKELEKVII 588

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMC 454
              S   + GV P+   +  I   C
Sbjct: 589 FFESMEPQYGVEPDKYAYAAIFWAC 613



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 144/340 (42%), Gaps = 7/340 (2%)

Query: 71  CKSQKAIKEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           C   +  +EA+  F+++        L ++N L+     +   E A +    +Q+ GL  D
Sbjct: 332 CARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPD 391

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              +++LI+ CA +G+ +   EV   M  +  +PNV ++  L+    K G   KA   + 
Sbjct: 392 VMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFH 451

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M      P+ V + +L++A  +     +    + ++  E   +  D +     + A A 
Sbjct: 452 AMLDSGCPPNEVAWCSLLSAYEKGRQWKKVLYTIEKL--EELGMKLDVVAWSTTISALAK 509

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           AGQ + A E +K + K         Y+  I      G WE A SV+  M + G+ P+   
Sbjct: 510 AGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFKLMLRVGIRPNPQA 569

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             AL+   G   ++E      +  + Q G+     +Y+++  AC     WQ+A++  + M
Sbjct: 570 CCALLRAYGKGKELEKVIIFFESMEPQYGVEPDKYAYAAIFWACWTCGEWQRAVKYIDRM 629

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +     P       LI       Q+ K M+VL  M S  L
Sbjct: 630 EMAGCTPDSVIYTTLINMYEANGQIDKAMQVLERMGSGSL 669


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 155/324 (47%), Gaps = 3/324 (0%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           +I    +S  ++   + F  MV  G  P+  ++   +D  AK+G + + +G +     + 
Sbjct: 44  VINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGR- 102

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
            + D   F   I A  ++G V + F++LA+M  E   V P+      L++AC   G +D+
Sbjct: 103 TQFDVYSFGITIKAFCENGNVSKGFELLAQM--ETMGVSPNVFIYTILIEACCRNGDIDQ 160

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A+ ++  +    +     +YTI IN   + G  +    +Y  M   GV+P+    ++LI 
Sbjct: 161 AKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLIT 220

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                GK+  AF++  E   +G++   ++Y+ L+G         KA  L E MK   + P
Sbjct: 221 EYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINP 280

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           T  T N L+  LC+  QL K +  L  +K +GLCP  +TY+IL+    +  +  V   L+
Sbjct: 281 TTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELV 340

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSR 456
            + ++ G+ P+ V +  ++    R
Sbjct: 341 REMEDRGISPSKVTYTILMNTFVR 364



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 163/348 (46%), Gaps = 3/348 (0%)

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
           + C +   S+G F++L  ++  G+  +  +YT LI  C ++G +D    +F  M + G+ 
Sbjct: 116 AFCENGNVSKG-FELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLA 174

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
            N + Y  +I+G  K G     F  Y  M+   V P+   +N+LIT   + G +  AF V
Sbjct: 175 ANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKV 234

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
             E++     V  + +T   L+      GQV +A  + + + + +I  T   + + ++  
Sbjct: 235 FDEISK--RGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGL 292

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
             TG  + A S  + +   G+ P  V  + LI      G      E+++E +++GIS   
Sbjct: 293 CNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSK 352

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++Y+ LM     + + +KA E++  MK I L P   T   LI  LC    + +  ++   
Sbjct: 353 VTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKS 412

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           M  + L PN + Y+ ++    ++ +    L  L +  ++GV PN+  +
Sbjct: 413 MVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASY 460



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 201/470 (42%), Gaps = 34/470 (7%)

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVL 115
           D V +A F       + ++++   FKL+     +P+  +FN  + + A S + +   +  
Sbjct: 42  DAVINASF-----QSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLD---RTW 93

Query: 116 RLVQEAGLKADCKLYTTLITTCA--KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
               E   +    +Y+  IT  A  ++G V   FE+  +M   G+ PNV  Y  LI+ C 
Sbjct: 94  GFFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACC 153

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           + G + +A   +  M    +  ++ ++  +I    + G     F++  +M  ++  V P+
Sbjct: 154 RNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKM--KLVGVLPN 211

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T  +L+      G++  A +V+  I K  +      Y I I    + G    A  + +
Sbjct: 212 LYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLE 271

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M +  + P     + L+D   + G+++ A   L++ K  G+   +++Y+ L+   S   
Sbjct: 272 RMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVG 331

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           N     EL   M+   + P+  T   L+      D + K  E+   MK +GL P+  TY 
Sbjct: 332 NSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYG 391

Query: 414 ILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR--RYEKARTLNEHVL 469
           +L+   C + + VE   +  S   E  + PN V++  +I G C     Y+  + L E V 
Sbjct: 392 VLIHGLCIKGNMVEASKLYKSMV-EMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVK 450

Query: 470 SFNSGRPQIENKWTSLALM-----------VYREAIVAGTIPTVEVVSKV 508
             N   P + +  +++ ++           + +E   AG  P   + SKV
Sbjct: 451 --NGVTPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPESLCSKV 498



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 20/262 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK-----EAF 81
           +YN LI    R+G++S+   LLE M+R  +    + ++     +C + +  K     E  
Sbjct: 249 TYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKL 308

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +   L P  TL T+N+L+S  +   +S    +++R +++ G+      YT L+ T  +S 
Sbjct: 309 KLIGLCP--TLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSD 366

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            ++  +E+FH M   G+ P+ HTYG LI G    G + +A   Y  M   +++P+ V++N
Sbjct: 367 DIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYN 426

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I    +     +A   L EM    + V P+  +  + ++     G+   A+ + K + 
Sbjct: 427 TMINGYCKECNSYKALKFLEEMVK--NGVTPNVASYISTIQILCKDGKSIEAKRLLKEMT 484

Query: 262 KYNIKGTPEVYTIAINCCSQTG 283
           +  +K  PE      + CS+ G
Sbjct: 485 EAGLK-PPE------SLCSKVG 499


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 183/385 (47%), Gaps = 46/385 (11%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK----LVPNPTL 92
            G + + +D  +++  +G+L +D+V +    N +CK  ++I +AF+  +     V  P +
Sbjct: 167 NGEVQKAMDFHDNVAAQGML-LDEVCYGTLINGLCKIGRSI-DAFQLLQEMEGQVVKPNI 224

Query: 93  STFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             +NM++ S C      +     L++V + G+  D   YT+LI    ++G+   + ++  
Sbjct: 225 VIYNMIIDSFCKDELTCKARDLYLKIV-DMGIDPDILTYTSLIRGFCRTGQWGEVKQLMC 283

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EMVN  I PNV+T+  LID   + G++ +A G + +M  +  +PD V FN LI+      
Sbjct: 284 EMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISG----- 338

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
                                           C + G V  AR+++  + +  I      
Sbjct: 339 -------------------------------HCLH-GNVLEARKLFDTVFERGILPDVWS 366

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           YTI I    +    + A S++++M  K ++ D V  S+LID    +G++  A+E+     
Sbjct: 367 YTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTIN 426

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N G    +I+Y+ L+ A    ++    +EL++ M    L PTV T N LI   C   ++ 
Sbjct: 427 NDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIR 486

Query: 392 KTMEVLSDMKSLGLCPNTITYSILL 416
           + M +LS M+S  L P++ITY+ L 
Sbjct: 487 EAMNLLSVMQSKNLAPDSITYNSLF 511



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 182/382 (47%), Gaps = 14/382 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P++ T ++ ++      +   AF VL +V + G + +    TT++     +G+V    + 
Sbjct: 117 PSIFTLSIWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMD- 175

Query: 150 FHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           FH+ V A G+  +   YG LI+G  K G+   AF     M  + VKP+ V++N +I +  
Sbjct: 176 FHDNVAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFC 235

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +     +A D+  ++      +DPD +T  +L++     GQ    +++  M    N    
Sbjct: 236 KDELTCKARDLYLKIVD--MGIDPDILTYTSLIRGFCRTGQWGEVKQL--MCEMVNKNIN 291

Query: 269 PEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAF 324
           P VYT  + I+   + G    A  +++ M K+G  PD V  + LI  +GH   G V  A 
Sbjct: 292 PNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLI--SGHCLHGNVLEAR 349

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++      +GI   + SY+ L+      K   +A+ L+  M+   +   +   ++LI  L
Sbjct: 350 KLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGL 409

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++    E+ S + + G  PN ITY+IL+ A  +  D+++G+ L       G+ P +
Sbjct: 410 CKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTV 469

Query: 445 VMFKCII-GMC-SRRYEKARTL 464
           + +  +I G C S+R  +A  L
Sbjct: 470 LTYNILINGYCKSKRIREAMNL 491



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 152/349 (43%), Gaps = 4/349 (1%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           V   G+  D   Y TLI    K G+    F++  EM    ++PN+  Y  +ID   K   
Sbjct: 180 VAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDEL 239

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
             KA   Y  +    + PD + + +LI    ++G       ++ EM  +   ++P+  T 
Sbjct: 240 TCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNK--NINPNVYTF 297

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+ A    G++  A+ ++ ++ K   +     +   I+     G+   A  ++D + +
Sbjct: 298 NVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFE 357

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           +G++PD    + LI       +++ A  +  E + + + + I+ YSSL+     +     
Sbjct: 358 RGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISY 417

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A EL+  + +    P V T N LI A C    +   +E+   M   GL P  +TY+IL+ 
Sbjct: 418 AWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILIN 477

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
              +   +   + LLS  +   + P+ + +  +  G+C S R   A  L
Sbjct: 478 GYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWEL 526



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/349 (21%), Positives = 142/349 (40%), Gaps = 43/349 (12%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D    +F+ ++N    P+V  +  +I    K      A      M  K V P     + 
Sbjct: 65  IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
            I      G +  AF VL  +    +   P++IT+  +MK     G+V +A + +     
Sbjct: 125 WINCYCHLGEMGFAFSVLGIVLKRGY--QPNNITLTTVMKGLCINGEVQKAMDFH----- 177

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                                         D++  +G++ DEV    LI+     G+   
Sbjct: 178 ------------------------------DNVAAQGMLLDEVCYGTLINGLCKIGRSID 207

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           AF++LQE + Q +   I+ Y+ ++ +    +   KA +LY  +  + + P + T  +LI 
Sbjct: 208 AFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIR 267

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
             C   Q  +  +++ +M +  + PN  T+++L+ A  RK  +     + +   + G  P
Sbjct: 268 GFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQP 327

Query: 443 NLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 489
           ++V F  +I G C      +AR L + V      R  + + W+   L++
Sbjct: 328 DIVTFNTLISGHCLHGNVLEARKLFDTVFE----RGILPDVWSYTILII 372



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 13/211 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           ++N LI      G + E   L + +  +G+L     Y       CK ++ I EA   F  
Sbjct: 331 TFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKR-IDEAVSLFNE 389

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                +V +  L + +++  +C S + S  A+++   +   G   +   Y  LI    K 
Sbjct: 390 MRCKNMVLDIVLYS-SLIDGLCKSGRISY-AWELFSTINNDGPPPNVITYNILIDAFCKI 447

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
             +D   E+F  M   G+ P V TY  LI+G  K+ ++ +A     +M+SKN+ PD + +
Sbjct: 448 QDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITY 507

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
           N+L     +SG +  A+++   M+    PVD
Sbjct: 508 NSLFDGLCKSGRISDAWELFKVMHVGGPPVD 538



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L + GRIS   +L   +   G       Y+      CK Q  I      FKL+      P
Sbjct: 409 LCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQD-IDMGIELFKLMCGKGLTP 467

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+ T+N+L++    SK    A  +L ++Q   L  D   Y +L     KSG++   +E+F
Sbjct: 468 TVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELF 527

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
             M   G   +V TY  L+D   KA  VA
Sbjct: 528 KVMHVGGPPVDVATYNVLLDAFCKAQDVA 556


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 96/435 (22%), Positives = 206/435 (47%), Gaps = 11/435 (2%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +YN LI      G+  E + +LE+M   G       Y +    +CK+ +  +  
Sbjct: 269 VKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREAR 328

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           F F  ++     P+++T+ +++   A+         +L L+   G+  +  ++    +  
Sbjct: 329 FFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAY 388

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
           AK G +D   ++F++M   G+ P+  +YGALID   K G+V  A   +  M ++ V PD 
Sbjct: 389 AKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDI 448

Query: 198 VVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           VVF++L+         ++  ++  EM N  +HP   + +    ++      G+V   + +
Sbjct: 449 VVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHP---NIVFFNTILCNLCKEGRVMEGQRL 505

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
              I    ++     Y   I+     G  + A  + + M   G+ PD    + L+     
Sbjct: 506 VDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCK 565

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           AG++++A+   ++  + GI+ G+++Y++++      K + +A ELY +M +   K  + T
Sbjct: 566 AGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYT 625

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            N ++  LC  + + + +++  ++ S GL  N IT++I++ A  +    E  + L +   
Sbjct: 626 YNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIP 685

Query: 437 EDGVIPNLVMFKCII 451
            +G++ N+V ++ ++
Sbjct: 686 ANGLVQNVVTYRLVV 700



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 176/401 (43%), Gaps = 45/401 (11%)

Query: 59  MDKVYHARFFNVCKSQKAIKEAF-----RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113
           MD +   +  N     K + EA      R  +L   P   ++N+L+    + K +E A +
Sbjct: 127 MDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALE 186

Query: 114 VLRLV---QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           +L ++   Q      +   Y+T+I      G+VD  + +F EM++ GI P+V TY  +ID
Sbjct: 187 LLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVID 246

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G  KA    +A   +  M    VKP+   +N LI      G       +L EM+A     
Sbjct: 247 GLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSA--GGP 304

Query: 231 DPDHITIGALMKACANAGQVDRAREVYK----------------MIHKYNIKG------- 267
            P+  T G+L+      G+   AR  +                 M+H Y  KG       
Sbjct: 305 KPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHD 364

Query: 268 ----------TP--EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
                     +P   ++ I  +  ++ G  + A  +++ M ++G+ PD V   ALID   
Sbjct: 365 LLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALC 424

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+V+ A     +  N+G++  I+ +SSL+        W+K  EL+  M ++ + P + 
Sbjct: 425 KLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIV 484

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
             N ++  LC   ++ +   ++  ++ +G+ P+ I+Y+ L+
Sbjct: 485 FFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLI 525



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/427 (21%), Positives = 190/427 (44%), Gaps = 16/427 (3%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN LI      G I E   LLE M   GL      Y+      CK+ +       F K+
Sbjct: 520 SYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKM 579

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P + T+N ++     +K    A ++   +  +G K D   Y  ++    KS  V
Sbjct: 580 LSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCV 639

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   ++F  + + G++ N+ T+  +I    K G+   A   +  + +  +  + V +  +
Sbjct: 640 DEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLV 699

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +    + G+++    + + M  E +   P+   + AL++   + G + RA      + + 
Sbjct: 700 VENLIEEGSLEEFDSLFSAM--EKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDER 757

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           N        ++ I+  S       A S    + KK  I +E   SALI     A +++ A
Sbjct: 758 NFSVEASTTSMLISIFSSDEYQHHAKS----LPKKYRILNEANSSALIK---KARRIDDA 810

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           + + +E   +G++  +++Y++++        + +A ELY  M + + +  + T N ++  
Sbjct: 811 YSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNG 870

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC  + + +  ++   + S GL  N IT++I++ A  +    E  + L +    +G++P+
Sbjct: 871 LCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPD 930

Query: 444 LVMFKCI 450
           +V ++ +
Sbjct: 931 VVTYRLV 937



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 145/346 (41%), Gaps = 8/346 (2%)

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +T ++S  V ++F          + PN  TY  LI    + G +   F A+G++     +
Sbjct: 67  STTSESETVVSLFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWR 126

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
            D +V N L+        V  A DVL +   E+  + PD ++   L+K   N  + + A 
Sbjct: 127 MDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCM-PDTVSYNILLKGLCNEKRAEEAL 185

Query: 255 EVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           E+  M+    +   P     Y+  IN     G  +   +++ +M  +G+ PD V  + +I
Sbjct: 186 ELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVI 245

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D    A   + A  + Q+  + G+   I +Y+ L+    +   W++ + + E M +   K
Sbjct: 246 DGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPK 305

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P   T  +L+  LC   +  +       M   G+ P+  TY I+L     K  +     L
Sbjct: 306 PNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDL 365

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477
           L+    +G+ PN  +F          Y K   +++ +  FN  R Q
Sbjct: 366 LNLMVANGISPNHHIFNIFFSA----YAKCGIIDKAMDIFNKMRQQ 407



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/418 (21%), Positives = 170/418 (40%), Gaps = 39/418 (9%)

Query: 69  NVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           N+CK  + + E  R    +      P + ++N L+     +   + A ++L  +   GLK
Sbjct: 492 NLCKEGR-VMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLK 550

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
            D   Y TL+    K+G++D+ +  F +M++ GI P V TY  ++ G  +  + ++A   
Sbjct: 551 PDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKEL 610

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMK 242
           Y  M +   K D   +N ++    +S  VD A  +   + ++   ++    +I IGAL+K
Sbjct: 611 YLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLK 670

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
                G+ + A +++  I    +      Y + +    + G  E   S++  M K G  P
Sbjct: 671 G----GRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAP 726

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----------- 351
           +   L+AL+    H G +  A   L +   +  SV   + S L+   S+           
Sbjct: 727 NSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLP 786

Query: 352 -----------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
                            A+    A  L+  M    L P V T N ++  L    +  +  
Sbjct: 787 KKYRILNEANSSALIKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAK 846

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           E+   M +     N  TY+I+L    + + V+    +       G+  N++ F  +IG
Sbjct: 847 ELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIG 904



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/188 (19%), Positives = 84/188 (44%), Gaps = 3/188 (1%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFN 96
           RI +   L  +M  KGL      Y+     + ++ +  +    +  ++ + T   + T+N
Sbjct: 806 RIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYN 865

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           ++++    S   + AF++ + +   GL+ +   +  +I    K G+ +   ++F  +   
Sbjct: 866 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPAN 925

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G+ P+V TY  + +   + G + +  G +  M       D  + NAL+    Q G + RA
Sbjct: 926 GLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRA 985

Query: 217 FDVLAEMN 224
              L++++
Sbjct: 986 GAYLSKLD 993



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 81/187 (43%), Gaps = 8/187 (4%)

Query: 72  KSQKAIKEAFRFFKLVP----NPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           K  + I +A+  F+ +      P + T+N +L  +  + + SE     L ++  +  + +
Sbjct: 802 KKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMIN-SRTQMN 860

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y  ++    KS  VD  F++F  + + G++ N+ T+  +I    K G+   A   + 
Sbjct: 861 IYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFA 920

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            + +  + PD V +  +     + G+++    +   M     P+D     + AL++    
Sbjct: 921 AIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSR--LLNALVRRLLQ 978

Query: 247 AGQVDRA 253
            G + RA
Sbjct: 979 RGDISRA 985


>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 171/361 (47%), Gaps = 3/361 (0%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N ++   A ++  E AF   + VQ++G K D   Y +LIT     G     FEV+  M  
Sbjct: 166 NQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEA 225

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           AG   +  TY  +I   AK+G++  AF  +  M+ KN++P  +VF +L+ + G++G +D 
Sbjct: 226 AGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDT 285

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           +  V  EM      + P      +L+++   AG+++ A  ++  + K   +    +YT+ 
Sbjct: 286 SMKVYMEMQG--FGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMV 343

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           +   +++G  E A SV+ DM K G +P     S L++    +G+V++A ++     N G+
Sbjct: 344 VESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGL 403

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
             G+ +Y++L+   +N K    A ++   MK++     VS  + L+  + DG  +   + 
Sbjct: 404 RPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVYIKDGS-VDLALR 462

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
            L  M S G+  N      L  +C +    E    LL          +L+++  I+    
Sbjct: 463 WLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSILAHLV 522

Query: 456 R 456
           R
Sbjct: 523 R 523



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 157/336 (46%), Gaps = 5/336 (1%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           ++   AK+ K++  F  F ++ ++G + +  TY +LI      G   KAF  Y  M +  
Sbjct: 168 VVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEAAG 227

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
              D   +  +I +  +SG +D AF +  EM  +   + P  +   +L+ +   AG++D 
Sbjct: 228 CLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEK--NLRPSFLVFASLVDSMGKAGRLDT 285

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           + +VY  +  + ++ +  +Y   I    + G  E A  ++D+M K G  P+    + +++
Sbjct: 286 SMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVE 345

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               +GK+E A  +  + +  G      +YS L+   S +     A++LY  M +  L+P
Sbjct: 346 SHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRP 405

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            +ST  AL+T L +   +    +VL +MK++G   +     +L+V   +   V++ L  L
Sbjct: 406 GLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVYI-KDGSVDLALRWL 464

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNE 466
                 G+  N  + + +   C +   YE A+ L E
Sbjct: 465 RFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLE 500



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 132/270 (48%), Gaps = 7/270 (2%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +T+N L+++  +      AF+V   ++ AG   D   Y  +I + AKSG++DA F++F E
Sbjct: 198 ATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQE 257

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M    + P+   + +L+D   KAG++  +   Y  M+   ++P   ++ +LI +  ++G 
Sbjct: 258 MKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGK 317

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           ++ A  +  EM        P++     ++++ A +G+++ A  V+  + K     TP  Y
Sbjct: 318 LETALRIWDEMKKA--GFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTY 375

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +  +   S +G  + A  +Y+ MT  G+ P     +AL+    +   V+ A ++L E K 
Sbjct: 376 SCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKA 435

Query: 333 QGISVGIISYSSLM-----GACSNAKNWQK 357
            G SV + +   LM     G+   A  W +
Sbjct: 436 MGFSVDVSASDVLMVYIKDGSVDLALRWLR 465



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 122/282 (43%), Gaps = 10/282 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFRFFKLVPN 89
           L + GR+     L ++M+ K L     V+ +   ++ K+ +      +    + F L P+
Sbjct: 242 LAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPS 301

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            T+  +  L+     +   E A ++   +++AG + +  LYT ++ + AKSGK++    V
Sbjct: 302 ATM--YVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSV 359

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M  AG  P   TY  L++  + +GQV  A   Y  M +  ++P    + AL+T    
Sbjct: 360 FSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLAN 419

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              VD A  VL EM A    VD   ++   ++      G VD A    + +    I+   
Sbjct: 420 KKLVDVAAKVLLEMKAMGFSVD---VSASDVLMVYIKDGSVDLALRWLRFMGSSGIRTNN 476

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            +       C + G +E A  + +         D +  ++++
Sbjct: 477 FIIRQLFESCMKNGLYESAKPLLETYVNSAAKVDLILYTSIL 518



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 103/223 (46%), Gaps = 9/223 (4%)

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  VY+ M   G + D      +I     +G+++AAF++ QE K + +    + ++SL+ 
Sbjct: 216 AFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVD 275

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           +   A     ++++Y  M+   L+P+ +   +LI +     +L   + +  +MK  G  P
Sbjct: 276 SMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRP 335

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 467
           N   Y++++ +  +   +E  + + S  ++ G +P    + C++ M S   +    +  +
Sbjct: 336 NYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLY 395

Query: 468 VLSFNSG-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
               N+G RP +      L L+  ++         V+V +KVL
Sbjct: 396 NSMTNAGLRPGLSTYTALLTLLANKK--------LVDVAAKVL 430


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 199/421 (47%), Gaps = 28/421 (6%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           F +L+   A S   + A  V R ++ +    A   +Y  +I   A+  KVD    +F EM
Sbjct: 120 FPLLIREIAISGSLKHAVHVFRWMKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEM 179

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                +PN  TY +LI   A+AGQ   A      M+   + P R  +N +I ACG +G  
Sbjct: 180 QEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNW 239

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            +A ++  +M    + V PD IT   ++ A  N  Q  +A   ++++    +        
Sbjct: 240 KKALELCKKMTE--NGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMN 297

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALI---DFAGHAGKVEAAFEILQ 328
           I I+C  + G +  A  +++ M ++     PD V  ++++      G A   +A F+I+ 
Sbjct: 298 IVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMV 357

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G+   I+SY++L+GA ++     +ALE ++ +K   L+P + +  +L+ A     
Sbjct: 358 A---EGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSA 414

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           Q  K  EV ++M+     PN ++Y+ L+ A      ++  + LL + ++DG+ P+++   
Sbjct: 415 QPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISIS 474

Query: 449 CIIGMCSRRYE-----------KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 497
            ++  C R  +           K+R +  + +++NSG        + L+L  Y++A+V  
Sbjct: 475 TLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIG------SYLSLGDYKKALVLY 528

Query: 498 T 498
           T
Sbjct: 529 T 529



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 195/431 (45%), Gaps = 13/431 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G+    I++++DM+R  +      Y+    N C +    K+A    K 
Sbjct: 190 TYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYN-NVINACGAAGNWKKALELCKK 248

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P L T N+++S   +      A     +++ + +  D      +I    K G 
Sbjct: 249 MTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGL 308

Query: 143 VDAMFEVFHEMV--NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
                E+F+ M        P+V TY +++   +  GQ       + IM ++ V+P+ V +
Sbjct: 309 YGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSY 368

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           NAL+ A    G    A +    +    + + PD ++  +L+ A   + Q ++AREV+  +
Sbjct: 369 NALLGAYASHGMHTEALETFKLLKQ--NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEM 426

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            K   K     Y   I+     G  + A S+  +M + G+ PD + +S L+   G   ++
Sbjct: 427 RKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQL 486

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
                IL  AK++GI +  ++Y+S +G+  +  +++KAL LY  M++  +KP   T N L
Sbjct: 487 TKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNIL 546

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I+  C   +  ++++   DM  L +      YS ++ +  ++  +       +  KE G 
Sbjct: 547 ISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGC 606

Query: 441 IPNLVMFKCII 451
            P+++ +  +I
Sbjct: 607 FPDVLTYTTLI 617



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/499 (22%), Positives = 201/499 (40%), Gaps = 81/499 (16%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARF---FNVCKSQKAIKEAFRFFKLVP-N 89
           L++ G   E I+L   M ER+     D V +      ++VC   +  K  F         
Sbjct: 303 LVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVR 362

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + ++N L+   AS      A +  +L+++ GL+ D   YT+L+    +S + +   EV
Sbjct: 363 PNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREV 422

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+EM     +PN  +Y ALID    AG + +A      M    ++PD +  + L+TACG+
Sbjct: 423 FNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGR 482

Query: 210 SGAVDRAFDVLA-------EMNAEVHP--------------------------VDPDHIT 236
              + +   +LA       ++N   +                           V PD +T
Sbjct: 483 CKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVT 542

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------------------------ 272
              L+      G+   + + ++ +   NI  T EVY                        
Sbjct: 543 YNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMK 602

Query: 273 -----------TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                      T  I   S  G W  A  ++ +M   G  PD +  S+L++     G+ E
Sbjct: 603 ETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQPE 662

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
              ++++  K + I +   +Y  ++ +C+  ++W+ A ++ EH+ S     +  T+N ++
Sbjct: 663 RVLQLIEFMKQKKIQLNQKAYFEIISSCTMLRDWKTASQIIEHLDSSLSSISFGTLNHIL 722

Query: 382 TALCDGDQLPKTMEVLSDM----KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             L    +    M++   M     ++GL   TI    LL+  + +  VEV    L   ++
Sbjct: 723 NFLGKCGRTESMMKLFYKMVTSCSTVGLSTYTILLRNLLIVGKWRKYVEV----LQWMED 778

Query: 438 DGVIPNLVMFKCIIGMCSR 456
            GV P L M++ ++    R
Sbjct: 779 AGVCPTLYMYQSVLPYIWR 797



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 169/385 (43%), Gaps = 10/385 (2%)

Query: 89  NPTLSTFNMLM---SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           +P + T+  +M   SVC  +++ +  F ++  V E G++ +   Y  L+   A  G    
Sbjct: 327 HPDVVTYTSIMYSYSVCGQAENCKAVFDIM--VAE-GVRPNIVSYNALLGAYASHGMHTE 383

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             E F  +   G+ P++ +Y +L++   ++ Q  KA   +  MR    KP++V +NALI 
Sbjct: 384 ALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALID 443

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           A G +G +  A  +L EM  E   + PD I+I  L+ AC    Q+ +   +        I
Sbjct: 444 AYGSAGMLKEAISLLHEM--EQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGI 501

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           +     Y   I      GD++ A  +Y  M    V PD V  + LI  +   G+   + +
Sbjct: 502 QLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVESLK 561

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
             ++  +  I +    YSS++ +        +A   +  MK     P V T   LI A  
Sbjct: 562 FFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYS 621

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           D     +  ++  +M++ G  P+ I  S L+ A  +    E  L L+   K+  +  N  
Sbjct: 622 DDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQLNQK 681

Query: 446 MFKCIIGMCS--RRYEKARTLNEHV 468
            +  II  C+  R ++ A  + EH+
Sbjct: 682 AYFEIISSCTMLRDWKTASQIIEHL 706


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/435 (23%), Positives = 193/435 (44%), Gaps = 7/435 (1%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ--KAI 77
           D    L +Y+ LI    + G + E + LLE+MER+GL     VY +     C     +  
Sbjct: 180 DCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETG 239

Query: 78  KEAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +E F    +   +P + T++ LM     +     A ++L+ +   G++ D   YT L   
Sbjct: 240 RELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADG 299

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K+G+     +V   MV  G EP   TY  +++G  K  ++  AFG   +M  K  KPD
Sbjct: 300 LCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPD 359

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +N L+     +G +  A D+   + +E   V PD  T   L++     G+V  A  +
Sbjct: 360 AVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARI 419

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  + +  ++G    Y   I           A  ++    + G  P+ +  S +I+    
Sbjct: 420 HSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCK 479

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
              +  A  +  + K+ GI   +I Y++LM +     + ++A  L++ M+++     V +
Sbjct: 480 MQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVS 539

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            N +I        +    E+LS+M  + L P+ +T+SIL+    +   ++  + L  +  
Sbjct: 540 FNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMV 599

Query: 437 EDGVIPNLVMFKCII 451
             G +P +V+F  ++
Sbjct: 600 SCGHVPGVVVFDSLL 614



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 121/518 (23%), Positives = 230/518 (44%), Gaps = 72/518 (13%)

Query: 37  RQGRISECIDLLEDMERK-GLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP-----N 89
           R G+  + + L   M+R    +  D V +    N  CK+++ + EA   F+ +       
Sbjct: 124 RSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKR-LAEARVLFEAMKKGGDCR 182

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P L T+++L+   C S +  EG   +L  ++  GLKAD  +Y++LI+     G ++   E
Sbjct: 183 PNLVTYSVLIDCYCKSGEVGEG-LGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRE 241

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL---IT 205
           +F EM+   + PNV TY  L+ G  + G+  +A      M ++ V+PD V +  L   + 
Sbjct: 242 LFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLC 301

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPV------------------------------DPDHI 235
             G++G   +  D++ +   E   +                               PD +
Sbjct: 302 KNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAV 361

Query: 236 TIGALMKACANAGQVDRAREVYKMI--HKYNIKGTPEVYTI--AINCCSQTGDWEFACSV 291
           T   L+K    AG++  A +++K++   K+++K  P+V+T    I    + G    A  +
Sbjct: 362 TYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVK--PDVFTCNNLIQGLCKEGRVHDAARI 419

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           +  M + G+  + V  + LI+    A K+  A ++ + A   G S   ++YS ++     
Sbjct: 420 HSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCK 479

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
            +    A  L+  MK   ++PTV   NAL+T+LC  D L +   +  +M+++    + ++
Sbjct: 480 MQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVS 539

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF 471
           ++I++    +  DV+    LLS+     ++P+ V F  +I     R+ K   L+E     
Sbjct: 540 FNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILIN----RFSKLGMLDE----- 590

Query: 472 NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
                         A+ +Y + +  G +P V V   +L
Sbjct: 591 --------------AMGLYEKMVSCGHVPGVVVFDSLL 614



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 152/326 (46%), Gaps = 2/326 (0%)

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           +TLI    K+ + DA+  V+H+MV+A + P   +  AL +        + AF    +M  
Sbjct: 46  STLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTK 105

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           +    +    N ++    +SG  D+A  + ++M      V PD +T   L+     A ++
Sbjct: 106 RGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRL 165

Query: 251 DRAREVYKMIHK-YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
             AR +++ + K  + +     Y++ I+C  ++G+      + ++M ++G+  D    S+
Sbjct: 166 AEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSS 225

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI      G +E   E+  E   + +S  +++YS LM        W++A E+ + M +  
Sbjct: 226 LISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARG 285

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           ++P V     L   LC   +    ++VL  M   G  P T+TY++++    ++D ++   
Sbjct: 286 VRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAF 345

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMC 454
            ++    + G  P+ V +  ++ G+C
Sbjct: 346 GVVEMMVKKGKKPDAVTYNTLLKGLC 371



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 174/412 (42%), Gaps = 12/412 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L R GR  E  ++L+DM  +G+      Y      +CK+ +A  +A +   L+      P
Sbjct: 265 LGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRA-GDAIKVLDLMVQKGEEP 323

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+N++++        + AF V+ ++ + G K D   Y TL+     +GK+    +++
Sbjct: 324 GTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLW 383

Query: 151 HEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
             +++    ++P+V T   LI G  K G+V  A   +  M    ++ + V +N LI    
Sbjct: 384 KLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYL 443

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +  +  A  +     A      P+ +T   ++        +  AR ++  +    I+ T
Sbjct: 444 AARKLIEALKLWKY--AVESGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPT 501

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   +    +    E A S++ +M       D V  + +ID    AG V++A E+L 
Sbjct: 502 VIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLS 561

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E     +    +++S L+   S      +A+ LYE M S    P V   ++L+       
Sbjct: 562 EMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKG 621

Query: 389 QLPKTMEVLSDMKSLGLCPNT-ITYSILLVACE--RKDDVEVGLMLLSQAKE 437
           +  K + +L  M    +  ++ +T +IL   C   R  DVE  L   SQ  E
Sbjct: 622 ETEKIISLLHQMADKDVVLDSKLTSTILACLCHMSRNLDVEKILPKFSQQSE 673



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 5/189 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+  +N LM+        E A  + + ++      D   +  +I    K+G V +  E+
Sbjct: 500 PTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKEL 559

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM    + P+  T+  LI+  +K G + +A G Y  M S    P  VVF++L+   G 
Sbjct: 560 LSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGL 619

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  ++   +L +M A+   V    +T   L   C     + R  +V K++ K++ +   
Sbjct: 620 KGETEKIISLLHQM-ADKDVVLDSKLTSTILACLC----HMSRNLDVEKILPKFSQQSEH 674

Query: 270 EVYTIAINC 278
                 I C
Sbjct: 675 TSKGTTIKC 683



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 38/188 (20%)

Query: 302 PDEVFLSALIDFAGHAGKVEA-----------------------------------AFEI 326
           P E   S LID    A + +A                                   AF +
Sbjct: 40  PSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSV 99

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK--LKPTVSTMNALITAL 384
           L     +G  V + + + ++     +    KA+ L+  MK     + P   T N L+   
Sbjct: 100 LSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGF 159

Query: 385 CDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           C   +L +   +   MK  G C PN +TYS+L+    +  +V  GL LL + + +G+  +
Sbjct: 160 CKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKAD 219

Query: 444 LVMFKCII 451
           + ++  +I
Sbjct: 220 VFVYSSLI 227


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 192/430 (44%), Gaps = 15/430 (3%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H   +H ++ + + Y+  I    ++G + +   L + M   GL+   + Y +     C+ 
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR- 394

Query: 74  QKAIKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           +K +++ +          +V +P   T+  ++    SS D +GA+ +++ +  +G + + 
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPY--TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
            +YTTLI T  ++ +      V  EM   GI P++  Y +LI G +KA ++ +A      
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M    +KP+   + A I+   ++     A   + EM      V P+ +    L+      
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE--CGVLPNKVLCTGLINEYCKK 570

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G+V  A   Y+ +    I G  + YT+ +N   +    + A  ++ +M  KG+ PD    
Sbjct: 571 GKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
             LI+     G ++ A  I  E   +G++  +I Y+ L+G    +   +KA EL + M  
Sbjct: 631 GVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             L P   T   +I   C    L +   +  +MK  GL P++  Y+ L+  C R +DVE 
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 750

Query: 428 GLMLLSQAKE 437
            + +    K+
Sbjct: 751 AITIFGTNKK 760



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 164/375 (43%), Gaps = 2/375 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +  L+      K+    +++L  +++  +      Y T++     SG +D  + +
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNI 439

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM+ +G  PNV  Y  LI    +  +   A      M+ + + PD   +N+LI    +
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +D A   L EM    + + P+  T GA +     A +   A +  K + +  +    
Sbjct: 500 AKRMDEARSFLVEMVE--NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            + T  IN   + G    ACS Y  M  +G++ D    + L++      KV+ A EI +E
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            + +GI+  + SY  L+   S   N QKA  +++ M    L P V   N L+   C   +
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + K  E+L +M   GL PN +TY  ++    +  D+     L  + K  G++P+  ++  
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query: 450 IIGMCSRRYEKARTL 464
           ++  C R  +  R +
Sbjct: 738 LVDGCCRLNDVERAI 752



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 197/427 (46%), Gaps = 26/427 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ------ 74
           ++  +  YN LI    +  R+ E    L +M   GL      Y A      ++       
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K +KE  R   ++PN  L T  ++   C   K  E A    R + + G+  D K YT L+
Sbjct: 543 KYVKE-MRECGVLPNKVLCT-GLINEYCKKGKVIE-ACSAYRSMVDQGILGDAKTYTVLM 599

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K+ KVD   E+F EM   GI P+V +YG LI+G +K G + KA   +  M  + + 
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLT 659

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ +++N L+    +SG +++A ++L EM+  V  + P+ +T   ++     +G +    
Sbjct: 660 PNVIIYNMLLGGFCRSGEIEKAKELLDEMS--VKGLHPNAVTYCTIIDGYCKSGDL---A 714

Query: 255 EVYKMIHKYNIKG-TPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           E +++  +  +KG  P+  VYT  ++ C +  D E A +++    KKG        +ALI
Sbjct: 715 EAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG-TNKKGCASSTAPFNALI 773

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISV----GIISYSSLMGACSNAKNWQKALELYEHMKS 367
           ++    GK E   E+L    +           ++Y+ ++       N + A EL+  M++
Sbjct: 774 NWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             L PTV T  +L+       +  +   V  +  + G+ P+ I YS+++ A  ++     
Sbjct: 834 ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTK 893

Query: 428 GLMLLSQ 434
            L+L+ Q
Sbjct: 894 ALVLVDQ 900



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/470 (21%), Positives = 200/470 (42%), Gaps = 49/470 (10%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           Q  +Y  LI    R+  + +  +LL +M+++ ++     Y      +C S   +  A+  
Sbjct: 381 QAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD-LDGAYNI 439

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            K +      P +  +  L+     +     A +VL+ ++E G+  D   Y +LI   +K
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           + ++D       EMV  G++PN  TYGA I G  +A + A A      MR   V P++V+
Sbjct: 500 AKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVL 559

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
              LI    + G V  A      M  +   +  D  T   LM       +VD A E+++ 
Sbjct: 560 CTGLINEYCKKGKVIEACSAYRSMVDQ--GILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +    I      Y + IN  S+ G+ + A S++D+M ++G+ P+ +  + L+     +G+
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +E A E+L E   +G+    ++Y +++     + +  +A  L++ MK   L P       
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query: 380 LITALCDGDQLPKTMEVL--------------------------SDMKSLGLC------- 406
           L+   C  + + + + +                           +++K+  L        
Sbjct: 738 LVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSF 797

Query: 407 -----PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                PN +TY+I++    ++ ++E    L  Q +   ++P ++ +  ++
Sbjct: 798 DRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLL 847



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/481 (20%), Positives = 190/481 (39%), Gaps = 27/481 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+++L+      K  E A  +L  +   G+  D   Y+ LI    K    DA   +
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            HEMV+ GI    + Y   I   +K G + KA   +  M +  + P    + +LI    +
Sbjct: 335 VHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR 394

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              V + +++L EM      + P   T G ++K   ++G +D A  + K +     +   
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISP--YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +YT  I    Q   +  A  V  +M ++G+ PD    ++LI     A +++ A   L E
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+     +Y + +     A  +  A +  + M+   + P       LI   C   +
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGK 572

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +       M   G+  +  TY++L+    + D V+    +  + +  G+ P++  +  
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632

Query: 450 IIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
           +I                     +G  ++ N     A  ++ E +  G  P V + + +L
Sbjct: 633 LI---------------------NGFSKLGN--MQKASSIFDEMVEEGLTPNVIIYNMLL 669

Query: 510 GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIV 567
           G        +  + L++ + V          C++IDG+ +      AF L +E    G+V
Sbjct: 670 GGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLV 729

Query: 568 P 568
           P
Sbjct: 730 P 730



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 148/348 (42%), Gaps = 30/348 (8%)

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA------- 179
           CK+   L+    +  ++D  ++V+  MV   +  +V TY  LI    +AG V        
Sbjct: 189 CKV---LLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLF 245

Query: 180 ---KAF--------GAYGIMRS---KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
              K F        GA  +  S   K + P +  ++ LI    +   ++ A  +L EM++
Sbjct: 246 KTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDS 305

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRARE-VYKMI-HKYNIKGTPEVYTIAINCCSQTG 283
               V  D+ T   L+         D A+  V++M+ H  NIK  P +Y   I   S+ G
Sbjct: 306 --LGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIK--PYMYDCCICVMSKEG 361

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
             E A +++D M   G+IP     ++LI+       V   +E+L E K + I +   +Y 
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYG 421

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +++    ++ +   A  + + M +   +P V     LI       +    M VL +MK  
Sbjct: 422 TVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ 481

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           G+ P+   Y+ L++   +   ++     L +  E+G+ PN   +   I
Sbjct: 482 GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 11/230 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-- 94
           + G ++E   L ++M+ KGL+  D   +    + C     ++ A   F        S+  
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVP-DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTA 767

Query: 95  -FNMLMSVCASSKDSEGAFQVLRLVQEAGL----KADCKLYTTLITTCAKSGKVDAMFEV 149
            FN L++       +E   +VL  + +       K +   Y  +I    K G ++A  E+
Sbjct: 768 PFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKEL 827

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           FH+M NA + P V TY +L++G  K G+ A+ F  +    +  ++PD ++++ +I A  +
Sbjct: 828 FHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLK 887

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIG---ALMKACANAGQVDRAREV 256
            G   +A  ++ +M A+    D   ++I    AL+   A  G+++ A +V
Sbjct: 888 EGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 16/182 (8%)

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           VY  M ++ V+ D      LI     AG V+   ++L + + +  +  +           
Sbjct: 208 VYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATL----------- 256

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
              N   AL+L E M    L P   T + LI  LC   +L     +L +M SLG+  +  
Sbjct: 257 ---NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNH 313

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHV 468
           TYS+L+    +  + +    L+ +    G+     M+ C I + S+    EKA+ L + +
Sbjct: 314 TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM 373

Query: 469 LS 470
           ++
Sbjct: 374 IA 375


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 146/287 (50%), Gaps = 12/287 (4%)

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALIT---ACGQSGAVDRAFDVLAEMNAEVHPVD 231
           AG++     AY  M +  ++P  V F+ LI+   AC +    +R F  + E       + 
Sbjct: 107 AGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAG-----IT 161

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFAC 289
           PD   I +L+ A A AG  D+A +V+  + +Y +  TP V T    I+ C + GD + A 
Sbjct: 162 PDVQAINSLINAFAKAGSPDQALKVFDQMSRYGV--TPSVITFNTLIDACGRAGDIDRAR 219

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            V+  +++ G+ P++   SALI      G+V+ AF  LQE + +G+    ++YS+L+ AC
Sbjct: 220 QVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINAC 279

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
             A    +A +  + M    ++P V T   LI A   G +L  + ++  +M+  G  PN 
Sbjct: 280 GRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVPNG 339

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           +T S L+ AC + D++++   +L    + G+ P  V +  ++  C+R
Sbjct: 340 VTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCAR 386



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 128/260 (49%), Gaps = 2/260 (0%)

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           L+     ++TLI+      +V      F EM+ AGI P+V    +LI+  AKAG   +A 
Sbjct: 125 LRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQAL 184

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
             +  M    V P  + FN LI ACG++G +DRA  V + ++     + P+  T  AL+ 
Sbjct: 185 KVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQ--AGLSPNDRTFSALIH 242

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
           + A  GQVD A    + +    ++     Y+  IN C + G    A    D+M   G+ P
Sbjct: 243 SHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEP 302

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           + V  + LID  G   ++E +F++ +E + +G     ++ S+LM AC  A     A  + 
Sbjct: 303 NVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVL 362

Query: 363 EHMKSIKLKPTVSTMNALIT 382
           EHM  + ++PT  T  +L+T
Sbjct: 363 EHMLDVGIEPTEVTYTSLLT 382



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 113/209 (54%), Gaps = 2/209 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P++ TFN L+  C  + D + A QV   + +AGL  + + ++ LI + A  G+VD  F  
Sbjct: 197 PSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSW 256

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G+EPN  TY ALI+ C +AGQ+A+AF     M    ++P+ V +  LI ACG+
Sbjct: 257 LQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGK 316

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              ++ +F +  EM  E   V P+ +T  ALM AC  A ++D A  V + +    I+ T 
Sbjct: 317 GKELEWSFKLFKEMR-ERGTV-PNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTE 374

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKK 298
             YT  +  C++ G  + A  V D++ K+
Sbjct: 375 VTYTSLLTQCARLGQADRAGIVLDELNKR 403



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 148/316 (46%), Gaps = 42/316 (13%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLST 94
           GRI +C+   E M     L    V  +   +   + + ++ A RFF+ +      P +  
Sbjct: 108 GRIDDCVAAYEAM-LACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQA 166

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
            N L++  A +   + A +V   +   G+      + TLI  C ++G +D   +VF  + 
Sbjct: 167 INSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLS 226

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            AG+ PN  T+ ALI   A  GQV +AF     MR++ ++P+RV ++ALI ACG++G + 
Sbjct: 227 QAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLA 286

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           RAF  L EM      ++P+ +T   L+ AC    ++                        
Sbjct: 287 RAFQTLDEMFG--TGIEPNVVTWTTLIDACGKGKEL------------------------ 320

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
                    +W F   ++ +M ++G +P+ V  SAL+D    A +++ AF +L+   + G
Sbjct: 321 ---------EWSF--KLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVG 369

Query: 335 ISVGIISYSSLMGACS 350
           I    ++Y+SL+  C+
Sbjct: 370 IEPTEVTYTSLLTQCA 385



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 8/257 (3%)

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKM 259
           N  + A G +G +D   D +A   A +   + P  +T   L+       +V  A   ++ 
Sbjct: 98  NVFLRALGDAGRID---DCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFRE 154

Query: 260 IHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + +  I  TP+V  I   IN  ++ G  + A  V+D M++ GV P  +  + LID  G A
Sbjct: 155 MLEAGI--TPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRA 212

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G ++ A ++       G+S    ++S+L+ + +      +A    + M++  L+P   T 
Sbjct: 213 GDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTY 272

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           +ALI A     QL +  + L +M   G+ PN +T++ L+ AC +  ++E    L  + +E
Sbjct: 273 SALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRE 332

Query: 438 DGVIPNLVMFKCIIGMC 454
            G +PN V    ++  C
Sbjct: 333 RGTVPNGVTCSALMDAC 349



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 106/220 (48%)

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
            ++A  +AG++D     Y+ +    ++ T   ++  I+          A   + +M + G
Sbjct: 100 FLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAG 159

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + PD   +++LI+    AG  + A ++  +    G++  +I++++L+ AC  A +  +A 
Sbjct: 160 ITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRAR 219

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           +++  +    L P   T +ALI +     Q+ +    L +M++ GL PN +TYS L+ AC
Sbjct: 220 QVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINAC 279

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
            R   +      L +    G+ PN+V +  +I  C +  E
Sbjct: 280 GRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKE 319



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 98/434 (22%), Positives = 174/434 (40%), Gaps = 57/434 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +Y+ LI    R G+++     L++M   G+ + + V      + C   K ++ +F+ FK 
Sbjct: 271 TYSALINACGRAGQLARAFQTLDEMFGTGI-EPNVVTWTTLIDACGKGKELEWSFKLFKE 329

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                 VPN    T + LM  C  + + + AF VL  + + G++     YT+L+T CA+ 
Sbjct: 330 MRERGTVPNGV--TCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLTQCARL 387

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVV 199
           G+ D    V  E+       +    G   +G   A +  +  G      RS + +   + 
Sbjct: 388 GQADRAGIVLDELNKRRPNSSSSGGGGGRNGDTNAAEFVREVGHVDSDTRSSSGRGTGIG 447

Query: 200 FNALITACGQSGAVDRAFDVLAEMN--------------------------AEVHPVDPD 233
             A   A G+  A   A  V A+                            A  +P+ P 
Sbjct: 448 DVARKEAAGRGPATAMAGTVSADPADSENVTEAFFSGTVGITPGPAGIDTIAGPNPLPPP 507

Query: 234 HITIGALMKACANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
             T  A+ +  A  G+         R R  ++M  K        + +  +    Q    +
Sbjct: 508 MATAEAITRGGATTGEGGSGETATARGRGAWRMNRK--------LESDLLQLFGQADQVD 559

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE--AKNQGISVGIISYSS 344
            A  V + M ++   PD      L++    AG ++ A E+++   A+  G  +  ++YS+
Sbjct: 560 AAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSA 619

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L+GAC  AK   +A  + + M+   +KPT  T  AL+            +EV   M++ G
Sbjct: 620 LLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFEAMETEG 679

Query: 405 LCPNTITYSILLVA 418
           + P   +Y+ LL A
Sbjct: 680 VRPGVRSYTSLLKA 693



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR----FFKLVPNPTLS 93
           QG++ E    L++M  +G L+ ++V ++   N C     +  AF+     F     P + 
Sbjct: 247 QGQVDEAFSWLQEMRARG-LEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVV 305

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+  L+  C   K+ E +F++ + ++E G   +    + L+  C K+ ++D  F V   M
Sbjct: 306 TWTTLIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHM 365

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           ++ GIEP   TY +L+  CA+ GQ  +A
Sbjct: 366 LDVGIEPTEVTYTSLLTQCARLGQADRA 393



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 10/194 (5%)

Query: 146  MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM----RSKNVKPDRVVFN 201
            +F VF EM + G+ P++  Y AL++ CA  G+  +A G   +M        ++PD V + 
Sbjct: 878  VFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYT 937

Query: 202  ALITACGQS--GAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRARE 255
            +LI A  ++    V+ A ++ A M    +       P  +T   LM+A   A    RA E
Sbjct: 938  SLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALE 997

Query: 256  VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
            +++      +   P     A+  C   GD + A  VYD M + G+ P+   L  L++   
Sbjct: 998  IWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNLCR 1057

Query: 316  HAGKVEAAFEILQE 329
              G    A  I++E
Sbjct: 1058 ANGLQSVAARIMRE 1071



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 34/215 (15%)

Query: 180  KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM--NAEVHPVDPDHITI 237
            + F  +  MRS+ V+PD   +NAL+  C   G  DRA  V+  M  + E   + PD +T 
Sbjct: 877  RVFLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTY 936

Query: 238  GALMKACANA--GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
             +L+KA A A   +V+ A E++  + +     T    T A                    
Sbjct: 937  TSLIKAAARAVPPRVEEAEEIFATMQQR----TNHFSTFA-------------------- 972

Query: 296  TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
                  P EV  + L+  +  A     A EI ++  + G++ G  S  + + AC  A + 
Sbjct: 973  -----RPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDV 1027

Query: 356  QKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
              AL++Y+ M+   ++P    +  L+  LC  + L
Sbjct: 1028 DTALQVYDVMREGGIRPNSRALLDLVN-LCRANGL 1061



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 17/223 (7%)

Query: 256  VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY----DDMTKKGVIPDEVFLSALI 311
            V++ +    ++     Y   +N C+  G+++ A  V     DD    G+ PD V  ++LI
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 312  DFAGHA--GKVEAAFEI---LQEAKNQGISVGI---ISYSSLMGACSNAKNWQKALELYE 363
              A  A   +VE A EI   +Q+  N   +      ++Y+ LM A   A+++ +ALE++ 
Sbjct: 941  KAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWR 1000

Query: 364  HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
               S  + P   +  A + A      +   ++V   M+  G+ PN+     L+  C    
Sbjct: 1001 QQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNLCRANG 1060

Query: 424  DVEVGLMLLSQ-AKEDGVI----PNLVMFKCIIGMCSRRYEKA 461
               V   ++ + +K D        N+ M +   G  SR+  K+
Sbjct: 1061 LQSVAARIMRERSKTDATTNRRRSNVSMRRNSAGSTSRKRNKS 1103



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 4/156 (2%)

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
           KL + L+    ++ +VDA F+V   MV     P+  T+  L++    AG + KA      
Sbjct: 543 KLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMER 602

Query: 188 MRSK--NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
            R++    + + + ++AL+ ACG++  + RAF ++  M      V P   T  ALM+ C 
Sbjct: 603 SRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRE--TGVKPTEGTYLALMEVCR 660

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
           ++     A EV++ +    ++     YT  +   S+
Sbjct: 661 HSRDSKAAVEVFEAMETEGVRPGVRSYTSLLKAISE 696



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 16/199 (8%)

Query: 112  FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN----AGIEPNVHTYGA 167
            F V + ++  G++ D + Y  L+ TCA  G+ D    V   MV+     G++P+  TY +
Sbjct: 879  FLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTS 938

Query: 168  LIDGCAKA--GQVAKAFGAYGIMRSKN------VKPDRVVFNALITACGQSGAVDRAFDV 219
            LI   A+A   +V +A   +  M+ +        +P  V +  L+ A   +    RA ++
Sbjct: 939  LIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEI 998

Query: 220  L-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
               +++A V P      +  A + AC  AG VD A +VY ++ +  I+         +N 
Sbjct: 999  WRQQLSAGVAP---GPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNL 1055

Query: 279  CSQTGDWEFACSVYDDMTK 297
            C   G    A  +  + +K
Sbjct: 1056 CRANGLQSVAARIMRERSK 1074



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 28/162 (17%), Positives = 70/162 (43%), Gaps = 6/162 (3%)

Query: 54  KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSE 109
           +G   M++   +    +      +  AF+  + +     +P   T+ +L++   ++   +
Sbjct: 535 RGAWRMNRKLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALD 594

Query: 110 GAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
            A +++   +  G  ++     Y+ L+  C ++ K+   F +   M   G++P   TY A
Sbjct: 595 KAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLA 654

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           L++ C  +     A   +  M ++ V+P    + +L+ A  +
Sbjct: 655 LMEVCRHSRDSKAAVEVFEAMETEGVRPGVRSYTSLLKAISE 696


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 116/457 (25%), Positives = 212/457 (46%), Gaps = 24/457 (5%)

Query: 56  LLDMDKVYHARFFNVCKSQKAIKEA----FRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111
           L DM  +   R   + +  +A K A    F+   +  NP LS       +   S++ +  
Sbjct: 87  LADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLS------GLVKESENGDME 140

Query: 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171
           F V R + +  ++ +   +  ++    K GK++   +V  +M   G+ PNV TY  LIDG
Sbjct: 141 F-VYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDG 199

Query: 172 CAKAGQVAKAFGAYGIMR---SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
             K G++ K + A  I++   +K + P+ V +N LI    +   V  A  V  EM  +  
Sbjct: 200 YCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEM--QRQ 257

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + P+ +T   L+    + G+VD A  +   +   +++     + + IN   +      A
Sbjct: 258 GLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEA 317

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
            ++++DM K+GV P+ +  + LID     G++E AF +     ++GI   + +Y+ L+  
Sbjct: 318 INLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAG 377

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
                + + A  L   M S KL   V T N LI +LC   +  K +++L +M   GL P+
Sbjct: 378 LCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPS 437

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNE 466
            +TY+ L+    R+ ++   L++ ++ +  G   N+V    +I G C + R E A  L  
Sbjct: 438 HVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLN 497

Query: 467 HVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503
            +L     R  + N+ T    ++  E +  G +P +E
Sbjct: 498 EMLE----RGLVPNRTT--YEIIKEEMMEKGFVPDIE 528



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 168/391 (42%), Gaps = 47/391 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--------AIKEAFRFF 84
           N L + G+++   D++EDM+  G+      Y+      CK  +        AI +     
Sbjct: 163 NGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAK 222

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            + PN    T+N+L+      ++  GA +V   +Q  GL+ +   Y  LI      GKVD
Sbjct: 223 GICPNEV--TYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVD 280

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  +MV++ +EPNV T+  LI+G  K   V +A   +  M  + V P+ + +  LI
Sbjct: 281 EAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLI 340

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            A  + G ++ AF +   M                          +DR   ++  +  YN
Sbjct: 341 DAYCKDGRMEDAFALYNMM--------------------------IDRG--IFPEVSTYN 372

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
                    IA  C  + GD + A S+ ++M  K +  D V  + LID     G+   A 
Sbjct: 373 C-------LIAGLC--RKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAV 423

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++L E   +G++   ++Y++LM       N + AL +   M+    +  V T N LI   
Sbjct: 424 KLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGF 483

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           C   +L     +L++M   GL PN  TY I+
Sbjct: 484 CLKGRLEDANGLLNEMLERGLVPNRTTYEII 514


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 118/516 (22%), Positives = 218/516 (42%), Gaps = 49/516 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L ++G++ E   L+ED   +G +     Y+      CK          F +L      PT
Sbjct: 214 LCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPT 273

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+  +++      D +   ++L  +   GL  + ++Y T+I    K G +    E   
Sbjct: 274 VETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIE 333

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M+  G +P++ TY  LI G  + G+V++A         K + P++  +  LI A  + G
Sbjct: 334 GMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQG 393

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             DRA + L EM    H   PD +T GAL+     AG+VD A  + + + +  +     +
Sbjct: 394 GYDRASNWLIEMTERGHK--PDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGI 451

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y I ++   +      A  +  +M  + V+PD    + L+D     G ++ A ++ +   
Sbjct: 452 YNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTI 511

Query: 332 NQGISVGIISYSSLMG------------ACSN-----------------------AKNWQ 356
            +G++ GI+ Y++++             AC N                         +  
Sbjct: 512 EKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLD 571

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            A +++  M  +K KP V T  +LI   C    L +++++  +M++ GL PN +TYSIL+
Sbjct: 572 GAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILI 631

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 476
            +  ++  +        +   +  +PN V F  ++   S+     R ++E    F     
Sbjct: 632 GSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSK--NGTRAISEKGNEFQ---- 685

Query: 477 QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
             ENK  S+ L  +   I  G  P     + +L CL
Sbjct: 686 --ENK-QSMFLNFFGRMISDGWAPRSAAYNSILICL 718



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 146/328 (44%), Gaps = 9/328 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG-IM 188
           Y++L+   A+S     M  V   M    + P       +I   + +G V KA   Y  ++
Sbjct: 97  YSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYFVL 156

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACA 245
           ++    PD +  N+L+    + G ++ A  +  EM  E+        D+ +   ++K   
Sbjct: 157 KTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEM-LEIDGAGDRCVDNYSTCIMVKGLC 215

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
             G+++  R++ +   ++     P +  Y   I+   + GD E A  ++ ++  KG +P 
Sbjct: 216 KEGKLEEGRKLIE--DRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPT 273

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
                A+I+     G  +A   +L E  ++G++V +  Y++++ A     +  KA+E  E
Sbjct: 274 VETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIE 333

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M     KP + T N LI+  C   ++ +  ++L      GL PN  +Y+ L+ A  ++ 
Sbjct: 334 GMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQG 393

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             +     L +  E G  P+LV +  ++
Sbjct: 394 GYDRASNWLIEMTERGHKPDLVTYGALV 421



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 19/198 (9%)

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           +QK  +E     K+   P + T+  L++      D   + ++ R +Q  GL  +   Y+ 
Sbjct: 573 AQKMFRE---MVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSI 629

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA----------- 181
           LI +  K  K+      F EM+     PN  T+  L++G +K G  A +           
Sbjct: 630 LIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQ 689

Query: 182 ---FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
                 +G M S    P    +N+++    Q G    A  +  +M ++     PD ++  
Sbjct: 690 SMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSK--GCIPDSVSFV 747

Query: 239 ALMKACANAGQVDRAREV 256
           AL+      G+    + +
Sbjct: 748 ALLHGVCLEGRSKEWKNI 765


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 208/481 (43%), Gaps = 50/481 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPNP--- 90
           L +Q R+   +DLL++M R  +   D V +      C      ++  R + KLV +P   
Sbjct: 203 LAKQDRLDHALDLLDEMPRSRV-QPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGAR 261

Query: 91  -TLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             L+T+N ML  +C   +  E      R+V    L+ D   Y  LI    +SG VD    
Sbjct: 262 PNLATYNVMLDGLCKFGRFKEVGEVWERMVAN-NLQPDVITYGILIHGLCRSGDVDGAAR 320

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF------GAYGI--MRSKNVK------ 194
           V+ E++  G+  +   Y +L+ G  +AG+V +A+      G  G+  +R+ N+       
Sbjct: 321 VYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFD 380

Query: 195 ---------------------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
                                PD V F  LI    Q+G  ++AF +  E  A V     D
Sbjct: 381 SGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE--ARVSGKQLD 438

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             +  +++    N G++  A +VY+ + K   K    +Y   I+   Q      A  +Y 
Sbjct: 439 VFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYS 498

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M   G  P  +  + LID    A K + A  + +E    G +  I +Y SL+    + K
Sbjct: 499 KMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDK 558

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITY 412
               AL +++ +    LK  V   N LI  LC   ++ + + V SDMK    C PN +TY
Sbjct: 559 KIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTY 618

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMCS--RRYEKARTLNEHVL 469
           + L+        ++    L +   EDG+ P+++ +   I G+CS  R +E  + L+E VL
Sbjct: 619 NTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDE-VL 677

Query: 470 S 470
           S
Sbjct: 678 S 678



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 185/415 (44%), Gaps = 12/415 (2%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A+++   + +Y  LI    R G +     +  ++ + GL+    +Y++     C++ + +
Sbjct: 292 ANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGR-V 350

Query: 78  KEAFRFFK---LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTL 133
           +EA++F+          L T+N+++     S   + A ++  L++ +     D   + TL
Sbjct: 351 QEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTL 410

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    ++G  +  F +F E   +G + +V +Y ++I+G    G++  A   Y  M     
Sbjct: 411 IHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGC 470

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KP+  ++NALI+   Q      A  + ++M    +   P  IT   L+     A +   A
Sbjct: 471 KPNSHIYNALISGFCQVYRTSDAVRIYSKMAD--NGCSPTVITYNTLIDGLCKAEKYQEA 528

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             V + + +         Y   I         + A S++  +  KG+  D +  + LI  
Sbjct: 529 SSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHG 588

Query: 314 AGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
              AGKV+ A  +  + K  +     +++Y++LM          KA  L+  +    L+P
Sbjct: 589 LCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEP 648

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
            + + N  I  LC  D++ + +++L ++ S G+ P  IT++IL+ A  +   ++V
Sbjct: 649 DIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKYGPIQV 703



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALITALCDGDQ 389
           G + GI S+++L+ A   A+ +  A   +  +       ++ P + T N ++ +LC    
Sbjct: 114 GCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGD 173

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L + + +   ++   + P+ ITYS L+    ++D ++  L LL +     V P++V +  
Sbjct: 174 LDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNA 233

Query: 450 IIGMCSR--RYEKARTLNEHVLSFNSGRPQI 478
           ++G C +   +EK   + + ++     RP +
Sbjct: 234 LLGGCFKAGEFEKVMRVWDKLVKDPGARPNL 264


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 131/531 (24%), Positives = 231/531 (43%), Gaps = 50/531 (9%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQK---A 76
           +S  L+SYN LI    R+ ++   + +L  M + G  + D V  +   N  C S++   A
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGY-EPDIVTLSSLLNGYCHSKRISDA 169

Query: 77  IKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           +    +  ++   P   TFN L+  +   +K SE    V ++VQ  G + D   Y  ++ 
Sbjct: 170 VALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQR-GCQPDLVTYGAVVN 228

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K G +D    +  +M    IE +V  Y  +IDG  K   +  AF  +  M +K ++P
Sbjct: 229 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRP 288

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D   +N+LI+     G    A  +L+ M      ++P+ +T  AL+ A    G++  A +
Sbjct: 289 DVFTYNSLISCLCNYGRWSDASRLLSNMIE--RKINPNVVTFSALIDAFVKEGKLVEAEK 346

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +Y  + K +I      Y+  IN        + A  +++ M  K   P+ V  + LI    
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 406

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            A +VE   E+ +E   +G+    ++Y++L+     A +   A ++++ M S  + P + 
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T + L+  LC   +L K + V   ++   + P+  TY+I++    +   VE G  L    
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 436 KEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAI 494
              GV PN++++  +I G C       + L E                   A  ++RE  
Sbjct: 527 SLKGVKPNVIIYTTMISGFCR------KGLKEE------------------ADALFREMK 562

Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVE-NLGVSADALKRSNLCSLI 544
             GT+P         GC    YN  IR RL + +   SA+ +K    C  +
Sbjct: 563 EDGTLPDS-------GC----YNTLIRARLRDGDKAASAELIKEMRSCGFV 602



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 177/418 (42%), Gaps = 39/418 (9%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P++  FN L+S  A  K  +    +   +Q   +  D   Y  LI    +  ++    
Sbjct: 76  PLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLAL 135

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            V  +M+  G EP++ T  +L++G   + +++ A      M     KPD V FN LI   
Sbjct: 136 AVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGL 195

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK----- 262
                   A  ++ +M        PD +T GA++      G +D A  + K + K     
Sbjct: 196 FLHNKASEAVALVDQMVQ--RGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEA 253

Query: 263 ----YNI-----------------------KGT-PEVYTI--AINCCSQTGDWEFACSVY 292
               YN                        KG  P+V+T    I+C    G W  A  + 
Sbjct: 254 DVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLL 313

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            +M ++ + P+ V  SALID     GK+  A ++  E   + I   I +YSSL+      
Sbjct: 314 SNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 373

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
               +A  ++E M S    P V T N LI   C   ++ + ME+  +M   GL  NT+TY
Sbjct: 374 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 433

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
           + L+    +  D ++   +  +   DGV P+++ +  ++ G+C   + EKA  + E++
Sbjct: 434 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 174/404 (43%), Gaps = 40/404 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           N L ++G I   + LL+ ME KG ++ D V Y+     +CK  K I +AF  F  +    
Sbjct: 228 NGLCKRGDIDLALSLLKKME-KGKIEADVVIYNTIIDGLCK-YKHIDDAFALFNKMETKG 285

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + T+N L+S   +      A ++L  + E  +  +   ++ LI    K GK+    
Sbjct: 286 IRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAE 345

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +++ EM+   I+P++ TY +LI+G     ++ +A   + +M SK+  P+ V +N LI   
Sbjct: 346 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGF 405

Query: 208 GQSGAVDRAFDVLAEMNAE---------------------------------VHPVDPDH 234
            ++  V+   ++  EM+                                      V PD 
Sbjct: 406 CKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDI 465

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           IT   L+      G++++A  V++ + K  ++     Y I I    + G  E    ++  
Sbjct: 466 ITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS 525

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           ++ KGV P+ +  + +I      G  E A  + +E K  G       Y++L+ A     +
Sbjct: 526 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGD 585

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
              + EL + M+S       ST++ +I  L DG      +E+LS
Sbjct: 586 KAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEMLS 629


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 187/402 (46%), Gaps = 37/402 (9%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P   T+N L+S +C   + S+      R+++ AG   D   Y TL+    K G++D   +
Sbjct: 8   PNRITYNALLSGLCNGGRMSDAQALYERMIK-AGYSPDVVTYNTLLHGFCKVGELDEALK 66

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F   V  G  P+V TY ALI+G  KA ++ +A      M S+N+ PD V +N+L+    
Sbjct: 67  IFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLC 126

Query: 209 QSGAVDRA----------------FDVLAEMNAEVHPV---------------DPDHITI 237
           ++G VD A                  +++ +  E+  V               +P+  T 
Sbjct: 127 KNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTY 186

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+       +V+ A E++  + K+ ++     YT+ I+   + G  E A  +  DM +
Sbjct: 187 NILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDE 246

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           KG +PD V  +A+I+      +V+ A  +L   + +G S   IS+++L+     A  W+K
Sbjct: 247 KGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKK 306

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---GLCPNTITYSI 414
           A+  ++ M    +KPTV T N L+  LC   Q  +  E ++   ++   G  P+ +TYS 
Sbjct: 307 AMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSA 366

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
           L+    +   ++    LL   +  G IPN+  +  +I G+C 
Sbjct: 367 LIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCG 408



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 169/361 (46%), Gaps = 10/361 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +  ++ E   +L+ M  + L+     Y++    +CK+ +  +        
Sbjct: 82  TYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDK 141

Query: 87  VPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
             +P + T++ L+S +C   +    A ++   V + G + +   Y  LI    K  +V+ 
Sbjct: 142 GFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNE 201

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            FE+F  +V  G+EP+  TY   IDG  KAG+V  A      M  K   PD V  NA+I 
Sbjct: 202 AFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVIN 261

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              +   VD A  +L+ M  E     P+ I+   L+     AG+  +A   +K + K  +
Sbjct: 262 GLCKEKRVDEAEVLLSGM--EAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGV 319

Query: 266 KGTPEVYTIAIN--C-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           K T   Y I ++  C   Q G  + A +++D M +KG +PD V  SALID  G AGK++ 
Sbjct: 320 KPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDD 379

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  +L   + +G    + +Y+SL+      +   +ALEL+  M      P   T   +I+
Sbjct: 380 ARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIIS 439

Query: 383 A 383
           A
Sbjct: 440 A 440



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 197/425 (46%), Gaps = 30/425 (7%)

Query: 10  QFPYPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA 65
           Q  Y     A Y+ DV     +YN L+    + G + E + + +   ++G +     Y+A
Sbjct: 30  QALYERMIKAGYSPDVV----TYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNA 85

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQE 120
                CK+ K + EA R  + + +    P + T+N L++ +C + +  E       L+ +
Sbjct: 86  LINGFCKADK-LDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARM----LIVD 140

Query: 121 AGLKADCKLYTTLIT-TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
            G   +   Y+TLI+  C +   V    ++F  ++  G EP V TY  LIDG  K  +V 
Sbjct: 141 KGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVN 200

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           +AF  +  +    ++PD + +   I    ++G V+ A  +L +M+ +     PD ++  A
Sbjct: 201 EAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEK--GCVPDVVSHNA 258

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQ--TGDWEFACSVYDDMT 296
           ++       +VD A EV  ++     KG +P   +     C Q   G W+ A + + +M 
Sbjct: 259 VINGLCKEKRVDEA-EV--LLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEML 315

Query: 297 KKGVIPDEVFLSALIDF---AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           K+GV P  V  + L+D    A   G+++ A  +      +G    +++YS+L+     A 
Sbjct: 316 KRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAG 375

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
               A  L   M++    P V T N+LI+ LC  +++ + +E+   M   G  P+TITY 
Sbjct: 376 KLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYG 435

Query: 414 ILLVA 418
            ++ A
Sbjct: 436 TIISA 440



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 147/331 (44%), Gaps = 5/331 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  L++     G++     ++  M+ AG  P+V TY  L+ G  K G++ +A   +    
Sbjct: 13  YNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAV 72

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            +   PD V +NALI    ++  +D A  +L  M +E   + PD +T  +L+      G+
Sbjct: 73  KRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE--NLVPDVVTYNSLVNGLCKNGR 130

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           VD AR +  ++ K          T+    C +      A  ++  + K+G  P+    + 
Sbjct: 131 VDEARML--IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNI 188

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LID      +V  AFE+       G+    I+Y+  +     A   + AL + + M    
Sbjct: 189 LIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG 248

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P V + NA+I  LC   ++ +   +LS M++ G  PN I+++ L+    R    +  +
Sbjct: 249 CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAM 308

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMCSRRYE 459
               +  + GV P +V +  ++ G+C  R E
Sbjct: 309 TTFKEMLKRGVKPTVVTYNILVDGLCKARQE 339



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 160/365 (43%), Gaps = 57/365 (15%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G  PN  TY AL+ G    G+++ A   Y  M      PD V +N L+    + G 
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A  +     A      PD +T  AL+     A ++D A+ + +              
Sbjct: 61  LDEALKIFD--GAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQR------------- 105

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
                                 M  + ++PD V  ++L++     G+V+ A  ++ +   
Sbjct: 106 ----------------------MVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVD--- 140

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +G S  +I+YS+L+ G C   +   +AL+L+  +     +P V T N LI  L   D++ 
Sbjct: 141 KGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVN 200

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  E+ S +   GL P+ ITY++ +    +   VE  L++L    E G +P++V    +I
Sbjct: 201 EAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVI 260

Query: 452 -GMC-SRRYEKARTL---------NEHVLSFNS---GRPQIENKWTSLALMVYREAIVAG 497
            G+C  +R ++A  L         + + +SFN+   G+ +   KW   A+  ++E +  G
Sbjct: 261 NGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR-AGKWKK-AMTTFKEMLKRG 318

Query: 498 TIPTV 502
             PTV
Sbjct: 319 VKPTV 323


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 100/456 (21%), Positives = 208/456 (45%), Gaps = 17/456 (3%)

Query: 10  QFPYPNGKHANYAHD-VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYH 64
           +F   NG + N   D +   +++YN L++      R+     LL +M  KG +     Y 
Sbjct: 158 KFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYT 217

Query: 65  ARFFNVC---KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
               ++C   K ++A + + R    VP      +N L++        E  F++   +   
Sbjct: 218 TVVSSMCRLGKVEEARELSMRIKSFVP-----VYNALINGFCREHKMEEVFELFNEMAVE 272

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G+  D   Y+T+I T ++ G V+    V  +M   G  PNVHT+ +L+ G    G++ +A
Sbjct: 273 GIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEA 332

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +  M  +  +P+ V +N LI      G +  A  V  +M  E + V P+  T   L+
Sbjct: 333 LDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKM--ERNGVFPNETTYSTLI 390

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
              A AG +  A E++  +          VYT  ++   +   +  A  + ++M      
Sbjct: 391 DGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCP 450

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P+ +  +  I     +GK E A ++L + +  G +  + +Y+ ++    NAK  ++AL++
Sbjct: 451 PNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQI 510

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
              ++ +++K  + T N +++  C        +++   +   G  P++ITY+ ++ A  +
Sbjct: 511 VGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCK 570

Query: 422 KDDVEVGLMLLSQAKEDGV-IPNLVMFKCII-GMCS 455
           + +V+  + L+ +  + G   P++  +  ++ G+C+
Sbjct: 571 QGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCN 606



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 117/510 (22%), Positives = 226/510 (44%), Gaps = 30/510 (5%)

Query: 58  DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAF 112
           D++ +  +   N  K++  I  A  FFK + N      T  T+  ++      +D +G  
Sbjct: 34  DLNLLKESEVLNKLKNEPNILLALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQ 93

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
            +L+L++  G+  +  L+  +I    ++G  +   + F+ +   G +P+V  Y  ++D  
Sbjct: 94  YLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDAL 153

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
               +     G Y  M+   ++ +   +N L+ A  ++  VD A  +LAEM+ +     P
Sbjct: 154 LSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYK--GCIP 211

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           D ++   ++ +    G+V+ ARE+        IK    VY   IN   +    E    ++
Sbjct: 212 DAVSYTTVVSSMCRLGKVEEAREL-----SMRIKSFVPVYNALINGFCREHKMEEVFELF 266

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           ++M  +G+ PD +  S +I+     G VE A  +L +   +G S  + +++SLM      
Sbjct: 267 NEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMG 326

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
               +AL+L+  M     +P     N LI  LC   ++ + + V   M+  G+ PN  TY
Sbjct: 327 GRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTY 386

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLS 470
           S L+    +  D+     + ++   +G +PN+V++ C++ +  R   +  A  L E++ +
Sbjct: 387 STLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMAN 446

Query: 471 FNSGRPQIE-NKW---------TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADI 520
            N     I  N +         T  A+ V  +    G  P V   ++VL  L   +NA  
Sbjct: 447 GNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGL---FNAKR 503

Query: 521 RERLVENLGVSADALKRSNLC---SLIDGF 547
               ++ +G   +   +SNL    +++ GF
Sbjct: 504 TREALQIVGEIEEMEIKSNLVTYNTILSGF 533



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 127/297 (42%), Gaps = 5/297 (1%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P    +N L+  +C+  K  E A  V + ++  G+  +   Y+TLI   AK+G +    E
Sbjct: 346 PNTVAYNTLIHGLCSYGKMVE-AVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASE 404

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++++M+  G  PNV  Y  ++D   +      A      M + N  P+ + FN  I    
Sbjct: 405 IWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLC 464

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            SG  + A  VL +M    +   P+  T   ++    NA +   A ++   I +  IK  
Sbjct: 465 CSGKTEWAMKVLNQMRQ--YGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSN 522

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++     G ++ A  +   +   G  PD +  + +I      G+V+ A +++ 
Sbjct: 523 LVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVD 582

Query: 329 EAKNQGISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
               +G     + +Y+SL+    N     +A+   + M +  + P  +T NAL+  L
Sbjct: 583 RLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRGL 639


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 101/430 (23%), Positives = 192/430 (44%), Gaps = 15/430 (3%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H   +H ++ + + Y+  I    ++G + +   L + M   GL+   + Y +     C+ 
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR- 394

Query: 74  QKAIKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           +K +++ +          +V +P   T+  ++    SS D +GA+ +++ +  +G + + 
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPY--TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
            +YTTLI T  ++ +      V  EM   GI P++  Y +LI G +KA ++ +A      
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M    +KP+   + A I+   ++     A   + EM      V P+ +    L+      
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE--CGVLPNKVLCTGLINEYCKK 570

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G+V  A   Y+ +    I G  + YT+ +N   +    + A  ++ +M  KG+ PD    
Sbjct: 571 GKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
             LI+     G ++ A  I  E   +G++  +I Y+ L+G    +   +KA EL + M  
Sbjct: 631 GVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             L P   T   +I   C    L +   +  +MK  GL P++  Y+ L+  C R +DVE 
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 750

Query: 428 GLMLLSQAKE 437
            + +    K+
Sbjct: 751 AITIFGTNKK 760



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 164/375 (43%), Gaps = 2/375 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +  L+      K+    +++L  +++  +      Y T++     SG +D  + +
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNI 439

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM+ +G  PNV  Y  LI    +  +   A      M+ + + PD   +N+LI    +
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +D A   L EM    + + P+  T GA +     A +   A +  K + +  +    
Sbjct: 500 AKRMDEARSFLVEMVE--NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            + T  IN   + G    ACS Y  M  +G++ D    + L++      KV+ A EI +E
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            + +GI+  + SY  L+   S   N QKA  +++ M    L P V   N L+   C   +
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + K  E+L +M   GL PN +TY  ++    +  D+     L  + K  G++P+  ++  
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query: 450 IIGMCSRRYEKARTL 464
           ++  C R  +  R +
Sbjct: 738 LVDGCCRLNDVERAI 752



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 197/427 (46%), Gaps = 26/427 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ------ 74
           ++  +  YN LI    +  R+ E    L +M   GL      Y A      ++       
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K +KE  R   ++PN  L T  ++   C   K  E A    R + + G+  D K YT L+
Sbjct: 543 KYVKE-MRECGVLPNKVLCT-GLINEYCKKGKVIE-ACSAYRSMVDQGILGDAKTYTVLM 599

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K+ KVD   E+F EM   GI P+V +YG LI+G +K G + KA   +  M  + + 
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLT 659

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ +++N L+    +SG +++A ++L EM+  V  + P+ +T   ++     +G +    
Sbjct: 660 PNVIIYNMLLGGFCRSGEIEKAKELLDEMS--VKGLHPNAVTYCTIIDGYCKSGDL---A 714

Query: 255 EVYKMIHKYNIKG-TPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           E +++  +  +KG  P+  VYT  ++ C +  D E A +++    KKG        +ALI
Sbjct: 715 EAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG-TNKKGCASSTAPFNALI 773

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISV----GIISYSSLMGACSNAKNWQKALELYEHMKS 367
           ++    GK E   E+L    +           ++Y+ ++       N + A EL+  M++
Sbjct: 774 NWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             L PTV T  +L+       +  +   V  +  + G+ P+ I YS+++ A  ++     
Sbjct: 834 ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTK 893

Query: 428 GLMLLSQ 434
            L+L+ Q
Sbjct: 894 ALVLVDQ 900



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/470 (21%), Positives = 200/470 (42%), Gaps = 49/470 (10%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           Q  +Y  LI    R+  + +  +LL +M+++ ++     Y      +C S   +  A+  
Sbjct: 381 QAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD-LDGAYNI 439

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            K +      P +  +  L+     +     A +VL+ ++E G+  D   Y +LI   +K
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           + ++D       EMV  G++PN  TYGA I G  +A + A A      MR   V P++V+
Sbjct: 500 AKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVL 559

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
              LI    + G V  A      M  +   +  D  T   LM       +VD A E+++ 
Sbjct: 560 CTGLINEYCKKGKVIEACSAYRSMVDQ--GILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +    I      Y + IN  S+ G+ + A S++D+M ++G+ P+ +  + L+     +G+
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +E A E+L E   +G+    ++Y +++     + +  +A  L++ MK   L P       
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query: 380 LITALCDGDQLPKTMEVL--------------------------SDMKSLGLC------- 406
           L+   C  + + + + +                           +++K+  L        
Sbjct: 738 LVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSF 797

Query: 407 -----PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                PN +TY+I++    ++ ++E    L  Q +   ++P ++ +  ++
Sbjct: 798 DRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLL 847



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/483 (20%), Positives = 190/483 (39%), Gaps = 31/483 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+++L+      K  E A  +L  +   G+  D   Y+ LI    K    DA   +
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            HEMV+ GI    + Y   I   +K G + KA   +  M +  + P    + +LI    +
Sbjct: 335 VHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR 394

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              V + +++L EM      + P   T G ++K   ++G +D A  + K +     +   
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISP--YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +YT  I    Q   +  A  V  +M ++G+ PD    ++LI     A +++ A   L E
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+     +Y + +     A  +  A +  + M+   + P       LI   C   +
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGK 572

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +       M   G+  +  TY++L+    + D V+    +  + +  G+ P++  +  
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632

Query: 450 IIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 507
           +I   S+    +KA +                         ++ E +  G  P V + + 
Sbjct: 633 LINGFSKLGNMQKASS-------------------------IFDEMVEEGLTPNVIIYNM 667

Query: 508 VLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFG 565
           +LG        +  + L++ + V          C++IDG+ +      AF L +E    G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 566 IVP 568
           +VP
Sbjct: 728 LVP 730



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 148/348 (42%), Gaps = 30/348 (8%)

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA------- 179
           CK+   L+    +  ++D  ++V+  MV   +  +V TY  LI    +AG V        
Sbjct: 189 CKV---LLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLF 245

Query: 180 ---KAF--------GAYGIMRS---KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
              K F        GA  +  S   K + P +  ++ LI    +   ++ A  +L EM++
Sbjct: 246 KTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDS 305

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRARE-VYKMI-HKYNIKGTPEVYTIAINCCSQTG 283
               V  D+ T   L+         D A+  V++M+ H  NIK  P +Y   I   S+ G
Sbjct: 306 --LGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIK--PYMYDCCICVMSKEG 361

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
             E A +++D M   G+IP     ++LI+       V   +E+L E K + I +   +Y 
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYG 421

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +++    ++ +   A  + + M +   +P V     LI       +    M VL +MK  
Sbjct: 422 TVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ 481

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           G+ P+   Y+ L++   +   ++     L +  E+G+ PN   +   I
Sbjct: 482 GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 11/230 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-- 94
           + G ++E   L ++M+ KGL+  D   +    + C     ++ A   F        S+  
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVP-DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTA 767

Query: 95  -FNMLMSVCASSKDSEGAFQVLRLVQEAGL----KADCKLYTTLITTCAKSGKVDAMFEV 149
            FN L++       +E   +VL  + +       K +   Y  +I    K G ++A  E+
Sbjct: 768 PFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKEL 827

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           FH+M NA + P V TY +L++G  K G+ A+ F  +    +  ++PD ++++ +I A  +
Sbjct: 828 FHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLK 887

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIG---ALMKACANAGQVDRAREV 256
            G   +A  ++ +M A+    D   ++I    AL+   A  G+++ A +V
Sbjct: 888 EGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937



 Score = 42.4 bits (98), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 16/182 (8%)

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           VY  M ++ V+ D      LI     AG V+   ++L + + +  +  +           
Sbjct: 208 VYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATL----------- 256

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
              N   AL+L E M    L P   T + LI  LC   +L     +L +M SLG+  +  
Sbjct: 257 ---NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNH 313

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHV 468
           TYS+L+    +  + +    L+ +    G+     M+ C I + S+    EKA+ L + +
Sbjct: 314 TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM 373

Query: 469 LS 470
           ++
Sbjct: 374 IA 375


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 195/430 (45%), Gaps = 12/430 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +YN LI    +   +++  +LL +M+ + L      Y      +C S   QKA +   + 
Sbjct: 418 TYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQM 477

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P +  +  L+         E A ++L+++   G+  D   Y  LI    ++ KV
Sbjct: 478 IRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKV 537

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +    +  +M   GI+PN HTYGA I+  +K+G++  A   +  M S  + P+ V++  L
Sbjct: 538 EEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTIL 597

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I      G    A      M  +   + PD     A++ + +  G+   A  V+    K 
Sbjct: 598 IKGHCDVGNTVEALSTFKCMLEK--GLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKT 655

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVE 321
            +     +Y   I+   + GD E A  +YD+M   G+ P+ V  + LI+  G+  +G + 
Sbjct: 656 GVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLT 715

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            AF++  E  ++GIS     Y  L+  C    N +KAL L+ H    K   ++S  N+LI
Sbjct: 716 EAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLF-HEAQQKSVGSLSAFNSLI 774

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            + C   ++ +  E+  DM    L PN +TY+IL+ A  + + +E    L    +   +I
Sbjct: 775 DSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNII 834

Query: 442 PNLVMFKCII 451
           PN + +  ++
Sbjct: 835 PNTLTYTSLL 844



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 201/495 (40%), Gaps = 87/495 (17%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L +YN  I    + G + E +++ + M  KGL      Y       CK QK  KEA   
Sbjct: 275 NLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK-QKRSKEAKLI 333

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F+ +P    NP   T+  L+       + E A ++   +   GLK +   Y  +I   AK
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +G++     +F+EM+ AGIEP+  TY  LIDG  K+  +AKA      M+++ + P    
Sbjct: 394 AGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFT 453

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           ++ LI+    S  + +A +VL +M    + V P+    G L+KA     + + A E+ K+
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIR--NGVKPNVFMYGTLIKAYVQESRYEMAIELLKI 511

Query: 260 ---------IHKYN--------------------------IKGTPEVYTIAINCCSQTGD 284
                    +  YN                          IK     Y   IN  S++G+
Sbjct: 512 MIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGE 571

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--------------------------- 317
            + A   + DM   G++P+ V  + LI   GH                            
Sbjct: 572 IQVAERYFKDMLSSGIVPNNVIYTILI--KGHCDVGNTVEALSTFKCMLEKGLIPDIRAY 629

Query: 318 ----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
                     GK + A  +  +    G+   +  Y+SL+       + +KA +LY+ M  
Sbjct: 630 SAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLH 689

Query: 368 IKLKPTVSTMNALIT--ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
             + P +   N LI     C    L +  ++  +M S G+ P+   Y IL+  C ++ ++
Sbjct: 690 NGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNL 749

Query: 426 EVGLMLLSQAKEDGV 440
           E  L L  +A++  V
Sbjct: 750 EKALSLFHEAQQKSV 764



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 158/336 (47%), Gaps = 5/336 (1%)

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             L+    K+  +   ++V+  MV A I P+V+TY  +I    K G V K       M  
Sbjct: 211 NNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEME- 269

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           K  KP+   +NA I    Q+GAVD A +V   M  +   + PD  T   L+       + 
Sbjct: 270 KECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEK--GLGPDGHTYTLLVDGFCKQKRS 327

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
             A+ +++ +    +      YT  I+   + G+ E A  + D+M  +G+  + V  +A+
Sbjct: 328 KEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAM 387

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I     AG++  A  +  E    GI     +Y+ L+     + +  KA EL   MK+ KL
Sbjct: 388 IGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P+  T + LI+ LC    L K  EVL  M   G+ PN   Y  L+ A  ++   E+ + 
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507

Query: 431 LLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKARTL 464
           LL     +GV+P+L  + C IIG+C +++ E+A+ L
Sbjct: 508 LLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKML 543



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 213/473 (45%), Gaps = 63/473 (13%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A+ V   L  YN LI    R  ++ E   LL DM  KG+      Y A F N+      I
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA-FINLYSKSGEI 572

Query: 78  KEAFRFFK------LVPN------------------PTLSTFNMLM-------------- 99
           + A R+FK      +VPN                    LSTF  ++              
Sbjct: 573 QVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAI 632

Query: 100 --SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
             S+  + K  E     L+ ++  G+  D  LY +LI+   K G ++   +++ EM++ G
Sbjct: 633 IHSLSKNGKTKEAMGVFLKFLK-TGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNG 691

Query: 158 IEPNVHTYGALID--GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           I PN+  Y  LI+  G  K+G + +AF  +  M SK + PD  ++  LI  CG+ G +++
Sbjct: 692 INPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEK 751

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEV--Y 272
           A  +  E  A+   V        +L+ +    G+V  ARE++  M+ K   K TP +  Y
Sbjct: 752 ALSLFHE--AQQKSVGSLS-AFNSLIDSFCKHGKVIEARELFDDMVDK---KLTPNIVTY 805

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           TI I+   +    E A  ++ DM  + +IP+ +  ++L+      G       + ++ + 
Sbjct: 806 TILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEA 865

Query: 333 QGISVGIISYSSLMGA-CSNAKNWQKALELYEH--MKSIKLKPTVSTMNALITALCDGDQ 389
           +GI+   I+Y  +  A C   K+ + AL+L     ++ IKL+  V   +ALI  LC   Q
Sbjct: 866 RGIACDAIAYGVMASAYCKEGKSLE-ALKLLNKSLVEGIKLEDDV--FDALIFHLCKEKQ 922

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           +   +E+LS+M    L  ++ T + LL+   +  + +    +L   +  G +P
Sbjct: 923 ISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 975



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 146/319 (45%), Gaps = 7/319 (2%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF   ++ G  P +     L+    KA  +   +  YG M    + PD   +  +I A  
Sbjct: 194 VFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHC 253

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V +   VL+EM  E     P+  T  A +      G VD A EV K++ +  +   
Sbjct: 254 KVGDVIKGKMVLSEMEKECK---PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPD 310

Query: 269 PEVYTIAIN-CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
              YT+ ++  C Q    E A  +++ M   G+ P+    +ALID     G +E A  I 
Sbjct: 311 GHTYTLLVDGFCKQKRSKE-AKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIK 369

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E   +G+ + +++Y++++G  + A    KA+ L+  M    ++P   T N LI      
Sbjct: 370 DEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKS 429

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             + K  E+L++MK+  L P+  TYS+L+       D++    +L Q   +GV PN+ M+
Sbjct: 430 HDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMY 489

Query: 448 KCIIG--MCSRRYEKARTL 464
             +I   +   RYE A  L
Sbjct: 490 GTLIKAYVQESRYEMAIEL 508



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 166/371 (44%), Gaps = 6/371 (1%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K+VP+    T N++ + C      +G   +  + +E   K +   Y   I    ++G VD
Sbjct: 237 KIVPDVYTYT-NVIKAHCKVGDVIKGKMVLSEMEKEC--KPNLFTYNAFIGGLCQTGAVD 293

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              EV   M+  G+ P+ HTY  L+DG  K  +  +A   +  M S  + P+R  + ALI
Sbjct: 294 EALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALI 353

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G ++ A  +  EM      +  + +T  A++   A AG++ +A  ++  +    
Sbjct: 354 DGFIKEGNIEEALRIKDEMIT--RGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAG 411

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           I+     Y + I+   ++ D   AC +  +M  + + P     S LI    H+  ++ A 
Sbjct: 412 IEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKAN 471

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+L +    G+   +  Y +L+ A      ++ A+EL + M +  + P +   N LI  L
Sbjct: 472 EVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++ +   +L DM   G+ PN  TY   +    +  +++V           G++PN 
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNN 591

Query: 445 VMFKCII-GMC 454
           V++  +I G C
Sbjct: 592 VIYTILIKGHC 602



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 169/381 (44%), Gaps = 10/381 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA----FRFFKLVPNPTLST 94
           G   E +   + M  KGL+   + Y A   ++ K+ K  KEA     +F K    P +  
Sbjct: 605 GNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKT-KEAMGVFLKFLKTGVVPDVFL 663

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA--KSGKVDAMFEVFHE 152
           +N L+S      D E A Q+   +   G+  +  +Y TLI      KSG +   F++F E
Sbjct: 664 YNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDE 723

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M++ GI P+ + Y  LIDGC K G + KA   +   + K+V      FN+LI +  + G 
Sbjct: 724 MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFNSLIDSFCKHGK 782

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V  A ++  +M  +   + P+ +T   L+ A   A  ++ A +++  +   NI      Y
Sbjct: 783 VIEARELFDDMVDK--KLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTY 840

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  +   +Q G+     S++ DM  +G+  D +    +       GK   A ++L ++  
Sbjct: 841 TSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLV 900

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +GI +    + +L+      K     LEL   M   +L  +  T N L+          +
Sbjct: 901 EGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDE 960

Query: 393 TMEVLSDMKSLGLCPNTITYS 413
             +VL  M+ LG  P +++ +
Sbjct: 961 ASKVLGVMQRLGWVPTSLSLT 981



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 160/374 (42%), Gaps = 11/374 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PTL   N LM     +      ++V   + EA +  D   YT +I    K G V     V
Sbjct: 205 PTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMV 264

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CG 208
             EM     +PN+ TY A I G  + G V +A     +M  K + PD   +  L+   C 
Sbjct: 265 LSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323

Query: 209 QSGAVDRAFDVLAEMNAEVHP---VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           Q  + +      A++  E  P   ++P+  T  AL+      G ++ A  +   +    +
Sbjct: 324 QKRSKE------AKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGL 377

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     Y   I   ++ G+   A S++++M   G+ PD    + LID    +  +  A E
Sbjct: 378 KLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACE 437

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L E K + ++    +YS L+    ++ + QKA E+ + M    +KP V     LI A  
Sbjct: 438 LLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYV 497

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              +    +E+L  M + G+ P+   Y+ L++   R   VE   MLL    E G+ PN  
Sbjct: 498 QESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAH 557

Query: 446 MFKCIIGMCSRRYE 459
            +   I + S+  E
Sbjct: 558 TYGAFINLYSKSGE 571


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 165/362 (45%), Gaps = 2/362 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  +++      ++  A  + R + EAG + D   Y+T+I +  K  +V+   ++
Sbjct: 225 PDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDI 284

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M   GI PN+ TY +LI G     +  +A      M S N+ P+ V F+ LI    +
Sbjct: 285 FSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCK 344

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V  A  VL  M      V+P+ +T  +LM   +   +V  AR+++ ++     K   
Sbjct: 345 EGNVFEARGVLKTMTE--MGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDV 402

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN   +      A  ++++M  +G+ PD V  + LID     G++  A ++ + 
Sbjct: 403 FSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKN 462

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G    + +YS L+          KA  L+  M+S  LKP +   N LI A+C    
Sbjct: 463 MLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRN 522

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L +  ++ S++   GL PN   Y+ ++    ++  ++  L      +EDG  PN   +  
Sbjct: 523 LKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNV 582

Query: 450 II 451
           II
Sbjct: 583 II 584



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 179/400 (44%), Gaps = 34/400 (8%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P   T +ML++     +  +  F VL  + + GL+     + TLI    K GK     E
Sbjct: 154 SPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVE 213

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F +MV  G +P+VHTY  +I+G  K G+   A G +  M     +PD V ++ +I +  
Sbjct: 214 LFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLC 273

Query: 209 QSGAVDRAFDVLAEMNAE-VHP--------------------------------VDPDHI 235
           +   V+ A D+ + M A+ + P                                + P+ +
Sbjct: 274 KDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIV 333

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+      G V  AR V K + +  ++     Y+  +N  S   +   A  ++D M
Sbjct: 334 TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVM 393

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             KG  PD    + LI+    A ++  A ++  E  +QG++  I+SY++L+         
Sbjct: 394 ITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRL 453

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           ++A +L+++M +    P + T + L+   C    L K   +   M+S  L PN + Y+IL
Sbjct: 454 REAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNIL 513

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           + A  +  +++    L S+    G+ PN+ ++  II G+C
Sbjct: 514 IDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLC 553



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 194/461 (42%), Gaps = 19/461 (4%)

Query: 69  NVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGL 123
           N   S + I +A  +F  +    P P +  FN L+S     +    A   L + ++ AGL
Sbjct: 94  NDASSFRNIDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGL 153

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
             D      LI    +  +VD  F V  +++  G++  + T+  LI+G  K G+  +A  
Sbjct: 154 SPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVE 213

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            +  M ++  +PD   +  +I    + G    A  +  +M        PD +T   ++ +
Sbjct: 214 LFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEA--GCQPDVVTYSTIIDS 271

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
                +V+ A +++  +    I      Y   I        W  A ++ ++M    ++P+
Sbjct: 272 LCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPN 331

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V  S LI+     G V  A  +L+     G+   +++YSSLM   S      +A +L++
Sbjct: 332 IVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFD 391

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M +   KP V + N LI   C   ++ +  ++ ++M   GL P+ ++Y+ L+    +  
Sbjct: 392 VMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLG 451

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKA----RTLNEHVLSFNSGRPQ 477
            +     L      +G +P+L  +  ++ G C + Y  KA    R +    L  N     
Sbjct: 452 RLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYN 511

Query: 478 I------ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
           I      +++    A  ++ E  V G  P V++ + ++  L
Sbjct: 512 ILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGL 552



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 183/409 (44%), Gaps = 23/409 (5%)

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           +  A   +  M  +  +P  + FN L++A  +      A   L++   E+  + PD  T+
Sbjct: 102 IDDALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSK-QMELAGLSPDTYTL 160

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+       +VD    V   I K  ++ T   +   IN   + G +  A  ++DDM  
Sbjct: 161 HMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVA 220

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           +G  PD    + +I+     G+  AA  + ++    G    +++YS+++ +    +   +
Sbjct: 221 RGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNE 280

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           AL+++ +MK+  + P + T N+LI  LC+  +  +   +L++M SL + PN +T+S+L+ 
Sbjct: 281 ALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLIN 340

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHVLSFNSGR 475
              ++ +V     +L    E GV PN+V +  ++   S + E  +AR L + V+     +
Sbjct: 341 IFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFD-VMITKGCK 399

Query: 476 PQI-----------ENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRE- 522
           P +           + K    A  ++ E I  G  P +   + ++ G  QL     +RE 
Sbjct: 400 PDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQL---GRLREA 456

Query: 523 -RLVENLGVSADALKRSNLCSLIDGFGE--YDPRAFSLLEEAASFGIVP 568
             L +N+  + +         L+DGF +  Y  +AF L     S  + P
Sbjct: 457 HDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKP 505



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 177/433 (40%), Gaps = 52/433 (12%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           Y  DV       N L + G       L   M   G       Y     ++CK ++ + EA
Sbjct: 223 YQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRR-VNEA 281

Query: 81  FRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
              F  +     +P + T+N L+  +C  S+  E +  +L  +    +  +   ++ LI 
Sbjct: 282 LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREAS-AMLNEMMSLNIMPNIVTFSLLIN 340

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K G V     V   M   G+EPNV TY +L++G +   +V +A   + +M +K  KP
Sbjct: 341 IFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKP 400

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAR 254
           D   +N LI    ++  +  A  +  EM   +H  + PD ++   L+      G++  A 
Sbjct: 401 DVFSYNILINGYCKAKRIGEAKQLFNEM---IHQGLTPDIVSYNTLIDGLCQLGRLREAH 457

Query: 255 EVYK-MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +++K M+   N+   P++  Y+I ++   + G    A  ++  M    + P+ V  + LI
Sbjct: 458 DLFKNMLTNGNL---PDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILI 514

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D                                   A   ++N ++A +L+  +    L+
Sbjct: 515 D-----------------------------------AMCKSRNLKEARKLFSELFVQGLQ 539

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P V     +I  LC    L + +E   +M+  G  PN  +Y++++    +  D    + L
Sbjct: 540 PNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQL 599

Query: 432 LSQAKEDGVIPNL 444
           + + +E G + ++
Sbjct: 600 IGEMREKGFVADV 612


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 233/525 (44%), Gaps = 30/525 (5%)

Query: 67  FFNVCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
            FNV      ++EA + F    K    P + + N L+   + S     A    + +  AG
Sbjct: 187 LFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAG 246

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           L      Y  +I   A+ G ++A   +F EM   G+ P++ TY +LIDG  K G +  A 
Sbjct: 247 LSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAV 306

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
             +  M+    +PD + +N+LI    +   + +AF+ L  M      + P+ +T   L+ 
Sbjct: 307 SVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQ--RGLQPNVVTYSTLID 364

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
           A   AG +  A + +  + +  ++     YT  I+   + GD   A  +  +M + GV  
Sbjct: 365 AFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNL 424

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           + V  +AL+D     G++  A E+       G ++    Y+SL      AK  +KA+++ 
Sbjct: 425 NIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDIL 484

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           E M    LKP +      I  LC  +++  +M V+ +M   GL  N+  Y+ L+ A  + 
Sbjct: 485 EEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKV 544

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQI-- 478
                 + LL + ++ G+   +V +  +I G+C     ++A    +H ++ N  +P I  
Sbjct: 545 GKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDH-MTRNGLQPNIMI 603

Query: 479 ---------ENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQL--PYNA-DIRERLV 525
                    +N     A  ++ E +  G  P   V + ++ G ++   P  A  +R R+V
Sbjct: 604 YTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMV 663

Query: 526 ENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 568
           E +G+  D    +   SLI GF  Y     A SLL+E    GI+P
Sbjct: 664 E-IGMELDLCAYT---SLIWGFSRYGQVQLAKSLLDEMLRKGIIP 704



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/455 (23%), Positives = 210/455 (46%), Gaps = 13/455 (2%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN +I    R+G +     L E+M+ KGL   D V +    +       +  A
Sbjct: 247 LSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRP-DIVTYNSLIDGYGKVGMLTGA 305

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F+ + +    P + T+N L++     +    AF+ L  +++ GL+ +   Y+TLI  
Sbjct: 306 VSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDA 365

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K+G +    + F +M+  G++PN  TY +LID   K G + +AF     M+   V  +
Sbjct: 366 FCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLN 425

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V + AL+    + G +  A ++   +      ++    T  +L      A  +++A ++
Sbjct: 426 IVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYT--SLFHGYIKAKMMEKAMDI 483

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            + ++K N+K    +Y   I    +  + E + +V  +M   G+  +    + LID    
Sbjct: 484 LEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFK 543

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            GK   A  +LQE ++ GI + +++Y  L+         Q+A+  ++HM    L+P +  
Sbjct: 544 VGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMI 603

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
             ALI  LC  D L +   + ++M   G+ P+ + Y+ L+    +  +    L L ++  
Sbjct: 604 YTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMV 663

Query: 437 EDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 469
           E G+  +L  +  +I   SR  + + A++L + +L
Sbjct: 664 EIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEML 698



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 177/423 (41%), Gaps = 11/423 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN LI    +  RI +  + L  M+++GL      Y       CK+   + EA +FF  
Sbjct: 323 TYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLL-EANKFFVD 381

Query: 85  --KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             ++   P   T+  L+       D   AF++   +Q+AG+  +   YT L+    + G+
Sbjct: 382 MIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGR 441

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +    E+F  ++ AG   N   Y +L  G  KA  + KA      M  KN+KPD +++  
Sbjct: 442 MREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGT 501

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
            I    +   ++ +  V+ EM      +  +      L+ A    G+   A  + + +  
Sbjct: 502 KIWGLCRQNEIEDSMAVIREMMD--CGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQD 559

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             IK T   Y + I+   + G  + A   +D MT+ G+ P+ +  +ALID       +E 
Sbjct: 560 LGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEE 619

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  +  E  ++GIS   + Y+SL+       N  +AL L   M  I ++  +    +LI 
Sbjct: 620 AKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIW 679

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
                 Q+     +L +M   G+ P+ +    LL       D+   L L       G+I 
Sbjct: 680 GFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGLIS 739

Query: 443 NLV 445
             +
Sbjct: 740 GTI 742



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 128/270 (47%), Gaps = 4/270 (1%)

Query: 187 IMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           +  ++NV +P   VF+ L       G ++ A     +MN     V P   +   L+   +
Sbjct: 170 LWSTRNVCRPGFGVFDTLFNVLVDLGMLEEARQCFWKMNK--FRVLPKVRSCNELLHRLS 227

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            + +   A   +K +    +  +   Y + I C ++ GD E A S++++M  KG+ PD V
Sbjct: 228 KSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIV 287

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             ++LID  G  G +  A  + +E K+ G    +I+Y+SL+      +   +A E    M
Sbjct: 288 TYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGM 347

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           K   L+P V T + LI A C    L +  +   DM  +GL PN  TY+ L+ A  +  D+
Sbjct: 348 KQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDL 407

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
                L S+ ++ GV  N+V +  ++ G+C
Sbjct: 408 NEAFKLESEMQQAGVNLNIVTYTALLDGLC 437


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 180/395 (45%), Gaps = 16/395 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAF---- 81
           +YN LI    + G I + +++LE M     +  D V Y+    ++C S K +KEA     
Sbjct: 178 TYNVLIGGYCKSGEIDKALEVLERMS----VAPDVVTYNTILRSLCDSGK-LKEAMEVLD 232

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R  +    P + T+ +L+    +      A ++L  +++ G K D   Y  LI    K G
Sbjct: 233 RQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEG 292

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++D   +  + M + G +PNV T+  ++      G+   A      M  K   P  V FN
Sbjct: 293 RLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFN 352

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    +   + RA DVL +M    H   P+ ++   L+       ++DRA E  +++ 
Sbjct: 353 ILINFLCRKRLLGRAIDVLEKMPK--HGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 410

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                     Y   +    + G  + A  + + ++ KG  P  +  + +ID     GK E
Sbjct: 411 SRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTE 470

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E+L+E + +G+   II+YS+L+          +A++++  M+ + +KP+  T NA++
Sbjct: 471 YAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIM 530

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
             LC   Q  + ++ L+ M   G  P   TY+IL+
Sbjct: 531 LGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILI 565



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 171/381 (44%), Gaps = 13/381 (3%)

Query: 77  IKEAFRFFKL------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           ++E  +F +       +P+  ++  +++   C S K ++ A +++ +++ +G   D   Y
Sbjct: 122 LEEGLKFLERMIYQGDIPD-VIACTSLIRGFCRSGK-TKKATRIMEILENSGAVPDVITY 179

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             LI    KSG++D   EV   M    + P+V TY  ++     +G++ +A         
Sbjct: 180 NVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQ 236

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           +   PD + +  LI A      V +A  +L EM  +     PD +T   L+      G++
Sbjct: 237 RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKK--GCKPDVVTYNVLINGICKEGRL 294

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D A +    +  Y  K     + I +     TG W  A  +  DM +KG  P  V  + L
Sbjct: 295 DEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNIL 354

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I+F      +  A ++L++    G     +SY+ L+      K   +A+E  E M S   
Sbjct: 355 INFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGC 414

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P + T N L+TALC   ++   +E+L+ + S G  P  ITY+ ++    +    E  + 
Sbjct: 415 YPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVE 474

Query: 431 LLSQAKEDGVIPNLVMFKCII 451
           LL + +  G+ P+++ +  ++
Sbjct: 475 LLEEMRRKGLKPDIITYSTLL 495



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 193/429 (44%), Gaps = 17/429 (3%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---- 89
           +L+R G + E +  LE M  +G +       +     C+S K  K+A R  +++ N    
Sbjct: 115 KLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKT-KKATRIMEILENSGAV 173

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N+L+     S + + A +VL   +   +  D   Y T++ +   SGK+    EV
Sbjct: 174 PDVITYNVLIGGYCKSGEIDKALEVL---ERMSVAPDVVTYNTILRSLCDSGKLKEAMEV 230

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
               +     P+V TY  LI+       V +A      MR K  KPD V +N LI    +
Sbjct: 231 LDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICK 290

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGT 268
            G +D A   L  M +  +   P+ IT   ++++ C+    +D  R +  M+ K     +
Sbjct: 291 EGRLDEAIKFLNNMPS--YGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRK---GCS 345

Query: 269 PEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P V T  I IN   +      A  V + M K G +P+ +  + L+       K++ A E 
Sbjct: 346 PSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEY 405

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L+   ++G    I++Y++L+ A         A+E+   + S    P + T N +I  L  
Sbjct: 406 LEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTK 465

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +    +E+L +M+  GL P+ ITYS LL    R+  V+  + +    +   + P+ V 
Sbjct: 466 VGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVT 525

Query: 447 FKCI-IGMC 454
           +  I +G+C
Sbjct: 526 YNAIMLGLC 534


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 184/392 (46%), Gaps = 8/392 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           + N+L++        + A  V+  + + G++ D   + TLI      GK+     +F+EM
Sbjct: 133 SLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEM 192

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           V +G EPNV +Y  +I+G  K G    A   +  M     KP+ V +N +I +  +   V
Sbjct: 193 VWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLV 252

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + A + L+EM     P  PD +T   ++    + GQ++ A  ++K +   N+      + 
Sbjct: 253 NEAVEFLSEMVDRGIP--PDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFN 310

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I ++   + G    A  V + MT+KG  P+    +AL+D      +++ A ++L     +
Sbjct: 311 ILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGK 370

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G +  + SY+ L+     +K   +A  L   M    L P   T + L+  LC   +  + 
Sbjct: 371 GCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREA 430

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
           + +  +M S GL P+ + YSILL    +   ++  L LL +  E  + PN++++  +I G
Sbjct: 431 LNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRG 490

Query: 453 M-CSRRYEKARTLNEHVLSFNSGRPQIENKWT 483
           M  + + E A+ L    LS +  RP I   WT
Sbjct: 491 MFIAGKLEVAKELFSK-LSADGIRPDI---WT 518



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 193/435 (44%), Gaps = 11/435 (2%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  ++S N LI    R   +   + ++  M + G+      ++     +C   K IKEA
Sbjct: 127 VTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGK-IKEA 185

Query: 81  FRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F  +      P + ++N +++    + ++  A +V R +++   K +   Y T+I +
Sbjct: 186 VGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDS 245

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K   V+   E   EMV+ GI P+V TY  ++ G    GQ+ +A   +  M  +NV PD
Sbjct: 246 LCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPD 305

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V FN L+    + G V  A  V   M  +    +P+  T  ALM       Q+D A +V
Sbjct: 306 TVTFNILVDGLCKEGMVSEARCVSETMTEK--GAEPNAYTYNALMDGYCLHNQMDEAIKV 363

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
             ++           Y I IN   ++     A  +  +M++K + PD V  S L+     
Sbjct: 364 LGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQ 423

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G+   A  + +E  + G+   +++YS L+       +  +AL+L + M   ++KP +  
Sbjct: 424 VGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIIL 483

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
              LI  +    +L    E+ S + + G+ P+  TY++++    ++   +       + +
Sbjct: 484 YTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKME 543

Query: 437 EDGVIPNLVMFKCII 451
           +DG +P+   +  II
Sbjct: 544 DDGFLPDSCSYNVII 558



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 175/405 (43%), Gaps = 5/405 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L  +G+I E + L  +M   G       Y+     +CK+   I     F K+  N   
Sbjct: 174 NGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGK 233

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N ++      +    A + L  + + G+  D   Y T++      G+++    +
Sbjct: 234 PNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRL 293

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EMV   + P+  T+  L+DG  K G V++A      M  K  +P+   +NAL+     
Sbjct: 294 FKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCL 353

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A  VL  M  +     P+  +   L+     + +++ A+ +   + + N+    
Sbjct: 354 HNQMDEAIKVLGIMIGK--GCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDT 411

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  +    Q G    A +++ +M   G++PD +  S L+D     G ++ A ++L+E
Sbjct: 412 VTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKE 471

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              + I   II Y+ L+     A   + A EL+  + +  ++P + T N +I  L     
Sbjct: 472 MHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGL 531

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
             +  E    M+  G  P++ +Y++++    +  D    + L+ +
Sbjct: 532 SDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDE 576



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 156/360 (43%), Gaps = 13/360 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    +   ++E ++ L +M  +G+      Y+      C S   + EA R FK 
Sbjct: 238 TYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFC-SLGQLNEATRLFKE 296

Query: 87  VPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      P   TFN+L+  +C     SE A  V   + E G + +   Y  L+       
Sbjct: 297 MVGRNVMPDTVTFNILVDGLCKEGMVSE-ARCVSETMTEKGAEPNAYTYNALMDGYCLHN 355

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++D   +V   M+  G  PN+ +Y  LI+G  K+ ++ +A      M  KN+ PD V ++
Sbjct: 356 QMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYS 415

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            L+    Q G    A ++  EM +    + PD +    L+      G +D A ++ K +H
Sbjct: 416 TLMQGLCQVGRPREALNLFKEMCSS--GLLPDLMAYSILLDGFCKHGHLDEALKLLKEMH 473

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  IK    +YTI I      G  E A  ++  ++  G+ PD    + +I      G  +
Sbjct: 474 ERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSD 533

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A+E  ++ ++ G      SY+ ++      ++   A++L + M   +     ST   L+
Sbjct: 534 EAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLL 593



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 126/286 (44%), Gaps = 7/286 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++G +SE   + E M  KG       Y+A     C   + + EA +   ++      P
Sbjct: 316 LCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQ-MDEAIKVLGIMIGKGCAP 374

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            LS++N+L++    SK    A ++L  + E  L  D   Y+TL+    + G+      +F
Sbjct: 375 NLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLF 434

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM ++G+ P++  Y  L+DG  K G + +A      M  + +KP+ +++  LI     +
Sbjct: 435 KEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIA 494

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G ++ A ++ ++++A+   + PD  T   ++K     G  D A E ++ +          
Sbjct: 495 GKLEVAKELFSKLSAD--GIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSC 552

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            Y + I    Q  D   A  + D+M  K    D      L+D   H
Sbjct: 553 SYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLESH 598



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 118/260 (45%), Gaps = 8/260 (3%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P  +  G  + + A   Q   A  +   +  + +        + INC  +    +FA SV
Sbjct: 94  PSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSV 153

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS 350
              M K G+ PD +  + LI+   + GK++ A  +  E    G    +ISY++++ G C 
Sbjct: 154 MGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCK 213

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
           N  N   A+ ++  M+  + KP V T N +I +LC    + + +E LS+M   G+ P+ +
Sbjct: 214 NG-NTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVV 272

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
           TY+ +L        +     L  +     V+P+ V F  ++ G+C      +AR ++E  
Sbjct: 273 TYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSE-T 331

Query: 469 LSFNSGRPQIENKWTSLALM 488
           ++     P   N +T  ALM
Sbjct: 332 MTEKGAEP---NAYTYNALM 348



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 9/204 (4%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L SYN LI    +  R++E   LL +M  K L      Y      +C+  +  +EA   
Sbjct: 375 NLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRP-REALNL 433

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           FK + +    P L  +++L+         + A ++L+ + E  +K +  LYT LI     
Sbjct: 434 FKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFI 493

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           +GK++   E+F ++   GI P++ TY  +I G  K G   +A+  +  M      PD   
Sbjct: 494 AGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCS 553

Query: 200 FNALITACGQSGAVDRAFDVLAEM 223
           +N +I    Q+     A  ++ EM
Sbjct: 554 YNVIIQGFLQNQDSSTAIQLIDEM 577


>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 159/342 (46%), Gaps = 11/342 (3%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           + +LYT LI    + G+V     +F EM+    + + +TY AL++   KA    +A   +
Sbjct: 45  NSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAVF 104

Query: 186 GIMRSKN---VKPDRVVFNALITACGQSGAVDRAFDVLAEM----NAEVHPVDPDHITIG 238
             M+  N    +P+ V  NALI A  + G  D+A  V  +M    N   H  +P+ IT  
Sbjct: 105 SHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITYN 164

Query: 239 ALMKACANAGQVDRAREVYKMIHKYN----IKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
            L+ A    G +D   +V + +   N    ++     Y   IN C + G +E A  + D 
Sbjct: 165 VLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELVDL 224

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M + GV PD +  +ALID  G AG  E A    +  K   +SV +++Y++++ A      
Sbjct: 225 MVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGREGL 284

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           +QKA E+++ M+   L+P   T  +L+ A        ++  V + M+  G   N + YS 
Sbjct: 285 YQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNVLIYSS 344

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L+ A  +  +      +L   +  G  PNL+ +  I+  C +
Sbjct: 345 LIDAYGKAGNYLEAARMLDMMRRAGCQPNLITYSAILSSCCK 386



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 152/325 (46%), Gaps = 17/325 (5%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT----LITTCAKSGKVDAMFEV 149
           T+  L++    +K  E A  V   ++E+  + +C+  T     LI    K G  D   +V
Sbjct: 83  TYTALVNAYGKAKMFEEALAVFSHMKESN-EPNCQPNTVTCNALIDALVKGGLYDQAIQV 141

Query: 150 FHEMVNA------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN----VKPDRVV 199
           F +M +       G EPNV TY  LID   K G +         MR  N    V+P+   
Sbjct: 142 FFDMRDGTNGLEHGCEPNVITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSAT 201

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +N LI ACG+ G  ++A + L ++  E H V PDHIT  AL+ A   AG  + A   +K 
Sbjct: 202 YNTLINACGKGGLYEKA-EELVDLMVE-HGVQPDHITYTALIDAYGKAGLWENAENTFKG 259

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +   N+      YT  I+   + G ++ A  ++  M   G+ P++V   +L++  G AG 
Sbjct: 260 MKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGL 319

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
            E +  +    +  G    ++ YSSL+ A   A N+ +A  + + M+    +P + T +A
Sbjct: 320 PEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNYLEAARMLDMMRRAGCQPNLITYSA 379

Query: 380 LITALCDGDQLPKTMEVLSDMKSLG 404
           ++++ C  +   +   +L  ++  G
Sbjct: 380 ILSSCCKSNCWVEAQVLLRRLQVFG 404



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 18/198 (9%)

Query: 284 DWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           DW     V+    K+    P+    + LI F G  G+V  A  + QE   +       +Y
Sbjct: 25  DWRCTLEVFSWSKKQSWYCPNSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTY 84

Query: 343 SSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++L+ A   AK +++AL ++ HMK       +P   T NALI AL  G    + ++V  D
Sbjct: 85  TALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFD 144

Query: 400 MK------SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-----VIPNLVMFK 448
           M+        G  PN ITY++L+ A  ++  +++G+ +L Q   DG     V PN   + 
Sbjct: 145 MRDGTNGLEHGCEPNVITYNVLIDALCKEGLLDIGMKVL-QYMRDGNTDQSVQPNSATYN 203

Query: 449 CIIGMCSRR--YEKARTL 464
            +I  C +   YEKA  L
Sbjct: 204 TLINACGKGGLYEKAEEL 221



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 2/196 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P  +T+N L++ C      E A +++ L+ E G++ D   YT LI    K+G  +     
Sbjct: 197 PNSATYNTLINACGKGGLYEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENT 256

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M    +  +V  Y A+ID   + G   KA   + +M+   ++P++V + +L+ A G+
Sbjct: 257 FKGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGK 316

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G  + + +V   M    +  + + +   +L+ A   AG    A  +  M+ +   +   
Sbjct: 317 AGLPEESRNVFNIMRESGY--EGNVLIYSSLIDAYGKAGNYLEAARMLDMMRRAGCQPNL 374

Query: 270 EVYTIAINCCSQTGDW 285
             Y+  ++ C ++  W
Sbjct: 375 ITYSAILSSCCKSNCW 390


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/500 (21%), Positives = 225/500 (45%), Gaps = 43/500 (8%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y  L   GR+ E   +   M+ +GL+    + ++   ++CK  ++ KEA   F  + 
Sbjct: 342 IHGYATL---GRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRS-KEAAEIFDSMT 397

Query: 89  ----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P + ++  L+   AS         +   ++  G+ ADC+++  LI   AK G VD
Sbjct: 398 AKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVD 457

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +F EM   G+ P+V TY  +I   ++ G++  A   +  M ++ ++P+  V++++I
Sbjct: 458 DAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSII 517

Query: 205 TACGQSGAVDRAFDVLAEM-------------NAEVHPV--------------------- 230
                 G + +A ++++EM             N+ ++ +                     
Sbjct: 518 QGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGE 577

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD IT  +L+      G++D+A ++   +    ++     Y+  ++   + G      +
Sbjct: 578 RPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLT 637

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           ++ +M +KGV P+ V    ++     AG+  AA +   E    G +V +  Y  ++G   
Sbjct: 638 LFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLC 697

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
                 +A+ L++ + ++ +K +++ +N +I A+    +  +  E+ + + + GL PN  
Sbjct: 698 RNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNES 757

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
           TY ++++   +   VE    + S  ++ G++P   +   II M   + E A+  N ++  
Sbjct: 758 TYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGN-YLSK 816

Query: 471 FNSGRPQIENKWTSLALMVY 490
            +  R  +E   TSL L ++
Sbjct: 817 VDGKRILLEASTTSLMLSLF 836



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 210/494 (42%), Gaps = 35/494 (7%)

Query: 45  IDLLEDMERKG------LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML 98
           +DL + M ++G      ++  + V H  FF   ++ KA        +    P + T+N++
Sbjct: 248 LDLFQMMAKEGGACSPNVVAYNTVIHG-FFKEGETGKACSLFHEMTRQGVKPDVVTYNLI 306

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           +     ++  + A  VLR +   G + D   Y  +I   A  G++    ++F +M + G+
Sbjct: 307 IDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGL 366

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
            PN+    + +    K G+  +A   +  M +K  KPD V +  L+      G       
Sbjct: 367 IPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIG 426

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           +   M +  + +  D      L+ A A  G VD A  ++  + +  +      Y+  I+ 
Sbjct: 427 LFNSMKS--NGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISA 484

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-S 336
            S+ G    A   ++ M  +G+ P+  V+ S +  F  H G V+A  E++ E  N+GI  
Sbjct: 485 FSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAK-ELVSEMINKGIPR 543

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             I+ ++S++ +         A ++++ +  I  +P V T  +LI   C   ++ K  ++
Sbjct: 544 PDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKI 603

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L  M+ +G+  + +TYS LL    +   +  GL L  + +  GV PN V +  ++     
Sbjct: 604 LDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGL-- 661

Query: 457 RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 516
                         F +GR       T  A   + E I +GT  TV +   +LG L    
Sbjct: 662 --------------FRAGR-------TVAARKKFHEMIESGTTVTVSIYGIILGGLCRNN 700

Query: 517 NADIRERLVENLGV 530
            AD    L + LG 
Sbjct: 701 CADEAIILFQKLGT 714



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 114/510 (22%), Positives = 212/510 (41%), Gaps = 43/510 (8%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           A F  VC+ Q   +       +VP  T+ T+++LM  C  ++  +    +   +   GLK
Sbjct: 138 ALFNRVCREQAGPR-------VVP-LTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLK 189

Query: 125 ADCKLYTTLIT-TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
                 +TL+   C  +   +A+  + H M   G  PNV +Y  ++ G        +A  
Sbjct: 190 IHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALD 249

Query: 184 AYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
            + +M  +     P+ V +N +I    + G   +A  +  EM  +   V PD +T   ++
Sbjct: 250 LFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQ--GVKPDVVTYNLII 307

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            A   A  +D+A  V + +     +     Y   I+  +  G  + A  ++  M  +G+I
Sbjct: 308 DALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLI 367

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P+ V  ++ +      G+ + A EI      +G    I+SY +L+   ++   +   + L
Sbjct: 368 PNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGYASEGWFADMIGL 427

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           +  MKS  +       N LI A      +   M + ++M+  G+ P+ +TYS ++ A  R
Sbjct: 428 FNSMKSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSR 487

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIE 479
              +   +   +Q    G+ PN  ++  II G C      KA+ L   +++    RP I 
Sbjct: 488 MGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDI- 546

Query: 480 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN 539
                    V+  +++        V+             DI + LV ++G   D +    
Sbjct: 547 ---------VFFNSVINSLCKDGRVMDA----------HDIFD-LVTDIGERPDVI---T 583

Query: 540 LCSLIDGF---GEYDPRAFSLLEEAASFGI 566
             SLIDG+   G+ D +AF +L+     G+
Sbjct: 584 FTSLIDGYCLVGKMD-KAFKILDAMEVVGV 612



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 159/382 (41%), Gaps = 49/382 (12%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC------KSQ 74
           VS  + +Y+ +I    R GR+++ ++    M  +G+     VYH+     C      K++
Sbjct: 471 VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAK 530

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + + E     K +P P +  FN ++ S+C   +  + A  +  LV + G + D   +T+L
Sbjct: 531 ELVSEMIN--KGIPRPDIVFFNSVINSLCKDGRVMD-AHDIFDLVTDIGERPDVITFTSL 587

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I      GK+D  F++   M   G+E ++ TY  L+DG  K G++      +  M+ K V
Sbjct: 588 IDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGV 647

Query: 194 KPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQ 249
           KP+ V +  ++      G++ A  + F  + E    V  V    I +G L +  CA+   
Sbjct: 648 KPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTV-TVSIYGIILGGLCRNNCADEAI 706

Query: 250 V------------------------------DRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           +                              + A+E++  I    +      Y + I   
Sbjct: 707 ILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINL 766

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            + G  E A +++  M K G++P    L+ +I      G++  A   L +   + I +  
Sbjct: 767 LKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGKRILLEA 826

Query: 340 ISYSSLMGACSNAKNWQKALEL 361
            + S ++   S    + + ++L
Sbjct: 827 STTSLMLSLFSRKGKYHEDMKL 848


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 198/435 (45%), Gaps = 11/435 (2%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  ++S N LI    R   +   + +L  M + G+      ++A    +C   K IKEA
Sbjct: 119 VTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGK-IKEA 177

Query: 81  FRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F  +      P + ++N +++    + ++  A  V + +++ G K D   Y T+I +
Sbjct: 178 VELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDS 237

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K   V+   E   EM++ GI PNV TY  ++ G    GQ+ +A   +  M  ++V PD
Sbjct: 238 LCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPD 297

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V    L+    + G V  A  V   M  +   V+P+  T  ALM        ++ A++V
Sbjct: 298 TVTLTILVDGLCKEGMVSEARLVFETMTEK--GVEPNISTYNALMDGYCLQRLMNEAKKV 355

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           ++++ +         Y I IN   ++   + A S+  +M  K + PD V  S L+     
Sbjct: 356 FEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQ 415

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G+ + A  I +E  + G+   +++YS L+       +  +AL+L + M+  KL+P +  
Sbjct: 416 FGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVH 475

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
              LI  +    +L    E+ S + + G+ P   TY++++    ++   +    L  + +
Sbjct: 476 HTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKME 535

Query: 437 EDGVIPNLVMFKCII 451
           +DG +PN   +  +I
Sbjct: 536 DDGFLPNSCSYNVMI 550



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 162/380 (42%), Gaps = 3/380 (0%)

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+   +R  ++ P P+++ F   +   A  K       +   +   G+  +      LI 
Sbjct: 72  ALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLIN 131

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              +   VD    +  +M   GI P   T+ ALI+G    G++ +A   +  M  +  +P
Sbjct: 132 CLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEP 191

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + + +N +I    ++G    A DV  +M  E +   PD +T   ++ +      V+ A E
Sbjct: 192 NVISYNTIINGLCKTGNTSMAVDVFKKM--EQNGCKPDVVTYNTIIDSLCKDRLVNDAME 249

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
               +    I      Y   ++     G    A  ++ +M  + V+PD V L+ L+D   
Sbjct: 250 FLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLC 309

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G V  A  + +    +G+   I +Y++LM      +   +A +++E M      P V 
Sbjct: 310 KEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVH 369

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           + N LI   C   ++ +   +L++M    L P+T+TYS L+    +    +  L +  + 
Sbjct: 370 SYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEM 429

Query: 436 KEDGVIPNLVMFKCII-GMC 454
              G++PNLV +  ++ G C
Sbjct: 430 CSYGLLPNLVTYSILLDGFC 449



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 135/319 (42%), Gaps = 20/319 (6%)

Query: 268 TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           T  VY+  + INC  +    +FA S+   M K G+ P     +ALI+   + GK++ A E
Sbjct: 120 THNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVE 179

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +  E   +G    +ISY++++       N   A+++++ M+    KP V T N +I +LC
Sbjct: 180 LFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLC 239

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               +   ME LS+M   G+ PN  TY+ ++        +     L  +     V+P+ V
Sbjct: 240 KDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTV 299

Query: 446 MFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIE-----------NKWTSLALMVYREA 493
               ++ G+C         L    ++     P I             +  + A  V+   
Sbjct: 300 TLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIM 359

Query: 494 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGEY 550
           I  G  P V   + ++         D  + L+  +    ++ D +  S L   +  FG  
Sbjct: 360 IRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGR- 418

Query: 551 DPR-AFSLLEEAASFGIVP 568
            P+ A ++ +E  S+G++P
Sbjct: 419 -PKEALNIFKEMCSYGLLP 436


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 182/421 (43%), Gaps = 44/421 (10%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMS-VC 102
           L + ME KG+              C+ +K   A     +  KL   P    FN L++ +C
Sbjct: 110 LCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLC 169

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
              + SE    V R+V E G K       TL+     +GKV     +   MV  G +PN 
Sbjct: 170 LECRVSEALELVDRMV-EMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNE 228

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TYG +++   K+GQ A A      M  +N+K D V ++ +I    + G++D AF++  E
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNE 288

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  E+     D IT   L+    NAG+                                 
Sbjct: 289 M--EIKGFKADIITYNTLIGGFCNAGR--------------------------------- 313

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
             W+    +  DM K+ + P+ V  S LID     GK+  A ++L+E   +GI+   I+Y
Sbjct: 314 --WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITY 371

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           +SL+         ++A+++ + M S    P + T N LI   C  +++   +E+  +M  
Sbjct: 372 NSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSL 431

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEK 460
            G+  NT+TY+ L+    +   +EV   L  +     V P++V +K ++ G+C     EK
Sbjct: 432 RGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEK 491

Query: 461 A 461
           A
Sbjct: 492 A 492



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 182/426 (42%), Gaps = 5/426 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPT 91
           N L   G++S+ + L++ M   G    +  Y      +CKS Q A+           N  
Sbjct: 201 NGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIK 260

Query: 92  LSTFNMLMSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           L      + +    KD   + AF +   ++  G KAD   Y TLI     +G+ D   ++
Sbjct: 261 LDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKL 320

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M+   I PNV T+  LID   K G++ +A      M  + + P+ + +N+LI    +
Sbjct: 321 LRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCK 380

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              ++ A  ++  M ++    DPD +T   L+     A ++D   E+++ +    +    
Sbjct: 381 ENRLEEAIQMVDLMISK--GCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANT 438

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +    Q+G  E A  ++ +M  + V PD V    L+D     G++E A EI  +
Sbjct: 439 VTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGK 498

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            +   + + I  Y  ++    NA     A +L+  +    +K      N +I+ LC  D 
Sbjct: 499 IEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDS 558

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L K   +   M   G  P+ +TY+IL+ A    DD      L+ + K  G   ++   K 
Sbjct: 559 LSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKM 618

Query: 450 IIGMCS 455
           +I M S
Sbjct: 619 VINMLS 624



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 185/393 (47%), Gaps = 5/393 (1%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P PT+  FN L S  A +K  E    + + ++  G+       + +I    +  K+   F
Sbjct: 84  PLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAF 143

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
               +++  G EP+   +  L++G     +V++A      M     KP  +  N L+   
Sbjct: 144 STMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGL 203

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
             +G V  A  VL +   E     P+ +T G ++     +GQ   A E+ + + + NIK 
Sbjct: 204 CLNGKVSDAV-VLIDRMVETG-FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 261

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y+I I+   + G  + A +++++M  KG   D +  + LI    +AG+ +   ++L
Sbjct: 262 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLL 321

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++   + IS  ++++S L+ +       ++A +L + M    + P   T N+LI   C  
Sbjct: 322 RDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKE 381

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           ++L + ++++  M S G  P+ +T++IL+    + + ++ GL L  +    GVI N V +
Sbjct: 382 NRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTY 441

Query: 448 KCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI 478
             ++ G C S + E A+ L + ++S    RP I
Sbjct: 442 NTLVQGFCQSGKLEVAKKLFQEMVS-RRVRPDI 473



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 145/349 (41%), Gaps = 38/349 (10%)

Query: 142 KVDAMFEVFHEMVNA-----------------------------------GIEPNVHTYG 166
           K D   ++F +M+ +                                   GI  +++T  
Sbjct: 68  KADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            +I+   +  +++ AF   G +     +PD V+FN L+        V  A +++  M   
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
            H   P  IT+  L+      G+V  A  +   + +   +     Y   +N   ++G   
Sbjct: 188 GHK--PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTA 245

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  +   M ++ +  D V  S +ID     G ++ AF +  E + +G    II+Y++L+
Sbjct: 246 LAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLI 305

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
           G   NA  W    +L   M   K+ P V T + LI +     +L +  ++L +M   G+ 
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIA 365

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           PNTITY+ L+    +++ +E  + ++      G  P+++ F  +I G C
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYC 414



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 165/375 (44%), Gaps = 13/375 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPT 91
           L + G +    +L  +ME KG       Y+     F N  +     K      K   +P 
Sbjct: 273 LCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPN 332

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + TF++L+           A Q+L+ + + G+  +   Y +LI    K  +++   ++  
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVD 392

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M++ G +P++ T+  LI+G  KA ++      +  M  + V  + V +N L+    QSG
Sbjct: 393 LMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSG 452

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A  +  EM +    V PD ++   L+    + G++++A E++  I K  ++    +
Sbjct: 453 KLEVAKKLFQEMVS--RRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGI 510

Query: 272 YTIAIN--CCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           Y I I+  C +   D  W+  CS    +  KGV  D    + +I        +  A  + 
Sbjct: 511 YMIIIHGMCNASKVDDAWDLFCS----LPLKGVKLDARAYNIMISELCRKDSLSKADILF 566

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++   +G +   ++Y+ L+ A     +   A EL E MKS      VST+  +I  L  G
Sbjct: 567 RKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSG 626

Query: 388 DQLPKTMEVLSDMKS 402
           +     +++LS  ++
Sbjct: 627 ELDKSFLDMLSTTRA 641


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 166/354 (46%), Gaps = 6/354 (1%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           Q+ + +   G+  +    + LI    ++G++     +F +++  G EP++ TY ALI G 
Sbjct: 398 QIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGF 457

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
            K+G +   F  Y  M  K  +PD +V++ LI    + G V  A     +  A    + P
Sbjct: 458 CKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQ--AVNRGLSP 515

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           +  T+  L+ +      +  A +VY ++   NIK     YTI I   +Q G  + A  ++
Sbjct: 516 NVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLF 575

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
             M KK   PD +    LID      K  A   I        ++  I  Y+ L+   S  
Sbjct: 576 FQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSRE 635

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            + + AL L+ H+     KP V T N +I   C+  +L   +++ + M S  L PN IT+
Sbjct: 636 GHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITF 695

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 466
           +IL+ A  R+  ++  +++ S+  E+G  PNLV + C+I      Y K++++ E
Sbjct: 696 TILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLI----HGYFKSQSMME 745



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 164/396 (41%), Gaps = 45/396 (11%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +  KL   P++ T++ L++    S +    F +   + +   + D  +Y+ LI    K G
Sbjct: 437 QILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQG 496

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            V      F + VN G+ PNV T   L+D   +   +  A   Y +M   N+K D V + 
Sbjct: 497 LVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYT 556

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    Q G VD A  +  +M  +     PD IT   L+       +      ++  + 
Sbjct: 557 ILIKGAAQFGRVDEALMLFFQMLKK--DFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMC 614

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K  +     +Y + IN  S+ G  E A  ++  + ++G  PD                  
Sbjct: 615 KNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPD------------------ 656

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
                            + ++++++    N K    A++L+  M S +L+P   T   LI
Sbjct: 657 -----------------VFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILI 699

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGV 440
            A C   ++   M + S M   G  PN +TYS L+    +    +E GL L ++  E+ +
Sbjct: 700 DAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNI 759

Query: 441 IPNLVMFKCII-GMCSRRYEKART------LNEHVL 469
            PN+V +  +I G+C R   K  +      L++H+L
Sbjct: 760 APNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLL 795



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 156/357 (43%), Gaps = 4/357 (1%)

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
             +V   G K +   ++TLI    K G +D  F +F  M   G+ P++  Y  LIDG  K
Sbjct: 295 FNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFK 354

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
           AG++        +   K +K D V F++ + A  + G + R   +   M  E   + P+ 
Sbjct: 355 AGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNE--GISPNV 412

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           ++   L+K     G++  A  ++  I K   + +   Y+  I    ++G+      +Y+D
Sbjct: 413 VSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYED 472

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M KK   PD +  S LI+     G V  A     +A N+G+S  + + ++L+ +    K 
Sbjct: 473 MIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKC 532

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
              A+++Y  M  + +K    T   LI       ++ + + +   M      P+ ITY  
Sbjct: 533 IVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCT 592

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 469
           L+    +      GL +     ++ V P++ ++  +I M SR    E A  L  HV+
Sbjct: 593 LIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVV 649



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 165/387 (42%), Gaps = 12/387 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y+ LI    + G + +   L EDM +K       VY      +CK Q  + +A RFF  
Sbjct: 449 TYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCK-QGLVGDALRFFFQ 507

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             N    P + T N L+      K   GA +V  L+    +KAD   YT LI   A+ G+
Sbjct: 508 AVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGR 567

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD    +F +M+    +P+V TY  LIDG  K  + +     +  M    V PD  ++N 
Sbjct: 568 VDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNV 627

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    + G ++ A  +   +  E  P  PD  T   ++    N  ++D A +++  +  
Sbjct: 628 LINMHSREGHLEAALGLFVHV-VERGP-KPDVFTFNTMICCYCNFKRLDDAVQLFAKMTS 685

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVE 321
             ++     +TI I+   + G  + A  ++  M ++G  P+ V  S LI  +      +E
Sbjct: 686 EQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMME 745

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           +  ++  E     I+  I+SYS L+         ++A   +       L P V     LI
Sbjct: 746 SGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILI 805

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPN 408
              C   +L + M +  +M    L P+
Sbjct: 806 RGYCKVGRLTEAMMLYDNMLLNRLTPD 832



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 155/371 (41%), Gaps = 3/371 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
            S +  +M+   +  + E   +  + + + G   D      ++        +    + F+
Sbjct: 237 FSVYEFVMNRFMNKGEVEMGLRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYFN 296

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            +V  G +PNV T+  LID   K G + KAF  + +M    V PD +V++ LI    ++G
Sbjct: 297 MVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAG 356

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++    +L  + A    +  D +   + M A    G + R  ++YK +    I      
Sbjct: 357 RLEDGQRLL--LVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVS 414

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
            +I I    Q G    AC ++  + K G  P  +  SALI     +G +   F + ++  
Sbjct: 415 CSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMI 474

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +      I YS L+           AL  +    +  L P V T+N L+ + C    + 
Sbjct: 475 KKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIV 534

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             M+V   M  L +  +T+TY+IL+    +   V+  LML  Q  +    P+++ +  +I
Sbjct: 535 GAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLI 594

Query: 452 -GMCSRRYEKA 461
            G+C  +   A
Sbjct: 595 DGLCKLKKSSA 605



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 151/366 (41%), Gaps = 33/366 (9%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPNV--HTYGALIDGCAKAGQVAKAFGA 184
           +Y  LI +  + G  D   ++F  +   GI   PNV     G+LID       V K    
Sbjct: 169 VYGFLIESYCRKGMFDKSVDIFMHVCVKGIFVSPNVVYLLLGSLIDSHCVEVIVDKYGEL 228

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP------VDPDHITIG 238
              MR +       V N  +      G V        EM    H          D IT  
Sbjct: 229 CSAMREQPFSVYEFVMNRFM----NKGEV--------EMGLRFHKALVQGGFGLDIITCN 276

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            ++K       +  A + + M+ +   K     ++  I+   + G+ + A  ++D M   
Sbjct: 277 KILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGN 336

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV PD +  S LID    AG++E    +L  A ++GI + ++ +SS M A     +  + 
Sbjct: 337 GVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRV 396

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           +++Y+ M +  + P V + + LI   C   ++ +   +   +  LG  P+ +TYS L+  
Sbjct: 397 IQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAG 456

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS--------RRYEKA--RTLNEH 467
             +  ++  G  L     +    P+ +++  +I G+C         R + +A  R L+ +
Sbjct: 457 FCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPN 516

Query: 468 VLSFNS 473
           V + N+
Sbjct: 517 VFTLNT 522



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 113/270 (41%), Gaps = 6/270 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           GR+ E + L   M +K        Y      +CK +K+      F  +  N   P ++ +
Sbjct: 566 GRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIY 625

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N+L+++ +     E A  +   V E G K D   + T+I       ++D   ++F +M +
Sbjct: 626 NVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTS 685

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-D 214
             + PN  T+  LID   + G++  A   +  M  +  +P+ V ++ LI    +S ++ +
Sbjct: 686 EQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMME 745

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
               +  EM    + + P+ ++   L+      G +  A   ++     ++      YTI
Sbjct: 746 SGLKLYNEMLE--NNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIAYTI 803

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
            I    + G    A  +YD+M    + PD 
Sbjct: 804 LIRGYCKVGRLTEAMMLYDNMLLNRLTPDR 833



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 101/251 (40%), Gaps = 8/251 (3%)

Query: 199 VFNALITACGQSGAVDRAF-DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           VF+  I   G       AF D   ++++  H V       G L+++    G  D++ +++
Sbjct: 136 VFDKFIMQFGNDYDTLDAFRDGFCDLDSTNHSV-----VYGFLIESYCRKGMFDKSVDIF 190

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM-TKKGVIPDEVFLSALIDFAGH 316
             +    I  +P V  + +     +   E     Y ++ +     P  V+   +  F  +
Sbjct: 191 MHVCVKGIFVSPNVVYLLLGSLIDSHCVEVIVDKYGELCSAMREQPFSVYEFVMNRFM-N 249

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G+VE      +     G  + II+ + ++       +   A + +  +  I  KP V T
Sbjct: 250 KGEVEMGLRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVT 309

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            + LI A C    L K   +   M   G+ P+ I YSIL+    +   +E G  LL  A 
Sbjct: 310 FSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVAL 369

Query: 437 EDGVIPNLVMF 447
           + G+  ++V F
Sbjct: 370 DKGIKLDVVGF 380


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/532 (22%), Positives = 240/532 (45%), Gaps = 36/532 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---------KAI 77
           +YN +I    + GR+++ + + E ME+ G    D  Y+   + +C  +          A+
Sbjct: 325 TYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAV 384

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           KE F        PT+ TF  L++    ++  + A ++   +  +  K D +++  LI + 
Sbjct: 385 KEGF-------TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSL 437

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K  ++    E+ +E+   G+ PNV TY ++IDG  K+G+V  A     +M     +P+ 
Sbjct: 438 IKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNA 497

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             +N+L+    +   + +A  +L +M  +   + P+ IT   L++   +    D A  ++
Sbjct: 498 WTYNSLMYGLVKDKKLHKAMALLTKMQKD--GIIPNVITYTTLLQGQCDEHDFDNAFRLF 555

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           +M+ +  +K     Y +  +   + G  E A   Y  + +KGV   +V+ + LID    A
Sbjct: 556 EMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKA 612

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G  + A  +++   ++G +    +YS L+ A    K   +AL + + M    +K T+   
Sbjct: 613 GNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAY 672

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LI  +    +      + ++M S G  P+  TY++ + +  ++  +E    L+ + + 
Sbjct: 673 TILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMER 732

Query: 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 497
           +GV P++V +  +I  C       R  +   L    G     N WT   L+ +   ++ G
Sbjct: 733 EGVAPDVVTYNILIDGCGHMGYIDRAFS--TLKRMVGASCEPNYWTYCLLLKH---LLKG 787

Query: 498 TIPTVEVV--SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
            +  V  V  S +   ++L     + ER+V++ G++      S   SLI GF
Sbjct: 788 NLAYVRSVDTSGMWNLIELDITWQLLERMVKH-GLNPTVTTYS---SLIAGF 835



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 196/489 (40%), Gaps = 63/489 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N LI++ R+ E  +LL ++   GL+     Y +     CKS K +  A    K++     
Sbjct: 435 NSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK-VDIALEVLKMMERDGC 493

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+N LM      K    A  +L  +Q+ G+  +   YTTL+         D  F 
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 553

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  M   G++P+ H Y  L D   KAG   +A  AY  +  K V   +V +  LI    
Sbjct: 554 LFEMMEQNGLKPDEHAYAVLTDALCKAG---RAEEAYSFIVRKGVALTKVYYTTLIDGFS 610

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G  D A  ++  M  E     PD  T   L+ A     +++ A  +   +    IK T
Sbjct: 611 KAGNTDFAATLIERMIDE--GCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCT 668

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMT-------------------------------- 296
              YTI I+   + G  + A  +Y++MT                                
Sbjct: 669 IFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLIL 728

Query: 297 ---KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG------ 347
              ++GV PD V  + LID  GH G ++ AF  L+            +Y  L+       
Sbjct: 729 KMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGN 788

Query: 348 -----ACSNAKNWQK-----ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
                +   +  W         +L E M    L PTV+T ++LI   C   +L +   +L
Sbjct: 789 LAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLL 848

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMCSR 456
             M   GL PN   Y++L+  C      E  L  +S   E G  P L  ++  ++G+C+ 
Sbjct: 849 DHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNE 908

Query: 457 -RYEKARTL 464
             +EK ++L
Sbjct: 909 GDFEKVKSL 917



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 145/345 (42%), Gaps = 21/345 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+++L+      K    A  +L  +   G+K     YT LI    + GK D    
Sbjct: 631 TPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKR 690

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +++EM ++G +P+  TY   I+   K G++  A      M  + V PD V +N LI  CG
Sbjct: 691 MYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 750

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G +DRAF  L  M       +P++ T   L+K     G +   R V       +  G 
Sbjct: 751 HMGYIDRAFSTLKRMVGA--SCEPNYWTYCLLLKHLLK-GNLAYVRSV-------DTSGM 800

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             +  + I        W+    + + M K G+ P     S+LI     AG++E A  +L 
Sbjct: 801 WNLIELDIT-------WQ----LLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLD 849

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G+S     Y+ L+  C + K ++KAL     M     +P + +   L+  LC+  
Sbjct: 850 HMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEG 909

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
              K   +  D+  LG   + + + IL     +   V++   +LS
Sbjct: 910 DFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLS 954



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 152/336 (45%), Gaps = 4/336 (1%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           +LVQ+ GL  D   Y T+I +  K G +      F  ++  G+EP   T  AL+ G  + 
Sbjct: 173 QLVQD-GLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRT 231

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G++ KA   + +M     + +   +  LI     +  V +A  +   M  +     P+  
Sbjct: 232 GELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRD--GCSPNVR 289

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
               L+     +G+V  AR ++  + +  +  +   Y   I   S+ G    A  + + M
Sbjct: 290 AFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELM 349

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            K G  PD+   + LI +     K E A E+L  A  +G +  ++++++L+     A+ +
Sbjct: 350 EKNGCHPDDWTYNTLI-YGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKF 408

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             AL +   M S K K  +     LI +L   D+L +  E+L+++ + GL PN ITY+ +
Sbjct: 409 DDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSI 468

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +    +   V++ L +L   + DG  PN   +  ++
Sbjct: 469 IDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLM 504



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 164/370 (44%), Gaps = 12/370 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+N ++       D   A +  RL+ E GL+ +      L+    ++G++     +
Sbjct: 181 PDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWL 240

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M   G + N ++Y  LI G   A  V KA   + +M+     P+   F  LI+   +
Sbjct: 241 FLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCK 300

Query: 210 SGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           SG V  A   FD + +     + V P  +T  A++   +  G+++ A ++ +++ K    
Sbjct: 301 SGRVGDARLLFDAMPQ-----NGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCH 355

Query: 267 GTPEVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                Y T+    C Q    E A  + ++  K+G  P  V  + LI+    A K + A  
Sbjct: 356 PDDWTYNTLIYGLCDQKT--EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALR 413

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +  +  +    + +  +  L+ +       ++A EL   + +  L P V T  ++I   C
Sbjct: 414 MKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYC 473

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              ++   +EVL  M+  G  PN  TY+ L+    +   +   + LL++ ++DG+IPN++
Sbjct: 474 KSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVI 533

Query: 446 MFKCII-GMC 454
            +  ++ G C
Sbjct: 534 TYTTLLQGQC 543



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 7/324 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++ +L+     +K    A  +  +++  G   + + +T LI+   KSG+V     +F  M
Sbjct: 255 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G+ P+V TY A+I G +K G++  A     +M      PD   +N LI      G  
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI-----YGLC 369

Query: 214 DRAFDVLAEM--NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           D+  +   E+  NA      P  +T   L+     A + D A  +   +     K   +V
Sbjct: 370 DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQV 429

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   IN   +    + A  + ++++  G++P+ +  +++ID    +GKV+ A E+L+  +
Sbjct: 430 FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 489

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G      +Y+SLM      K   KA+ L   M+   + P V T   L+   CD     
Sbjct: 490 RDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFD 549

Query: 392 KTMEVLSDMKSLGLCPNTITYSIL 415
               +   M+  GL P+   Y++L
Sbjct: 550 NAFRLFEMMEQNGLKPDEHAYAVL 573



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 128/321 (39%), Gaps = 23/321 (7%)

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +P+ Y  A+   ++    E+   VY  + + G++PD V  + +I      G +  A    
Sbjct: 147 SPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYF 206

Query: 328 QEAKNQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +     G+     + ++L +G C   +  +KA  L+  M  +  +    +   LI  LCD
Sbjct: 207 RLLLEGGLEPETFTCNALVLGYCRTGE-LRKACWLFLMMPLMGCQRNEYSYTILIQGLCD 265

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              + K + +   MK  G  PN   ++ L+    +   V    +L     ++GV+P+++ 
Sbjct: 266 AKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMT 325

Query: 447 FKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALM-------------VYR 491
           +  +I   S+  R   A  + E ++  N   P   + WT   L+             +  
Sbjct: 326 YNAMIVGYSKLGRMNDALKIKE-LMEKNGCHP---DDWTYNTLIYGLCDQKTEEAEELLN 381

Query: 492 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 551
            A+  G  PTV   + ++    +    D   R+   +  S   L       LI+   + D
Sbjct: 382 NAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKD 441

Query: 552 --PRAFSLLEEAASFGIVPCV 570
               A  LL E ++ G+VP V
Sbjct: 442 RLKEAKELLNEISANGLVPNV 462


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 184/400 (46%), Gaps = 11/400 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + GR+ +   LL+DM R G+  ++ + +    +    QK         +++ N     
Sbjct: 187 LCKSGRVDDARRLLDDMPRHGV-SLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEA 245

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+ T+ +L+   ++++D      +   ++   +  D  LYT +I    ++G +    +V 
Sbjct: 246 TVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVL 305

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            E V  G+EPN  TYG LI+G  K GQ+  A      M+ + V  ++++FN +I    + 
Sbjct: 306 DECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRK 365

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G VD A  + A M  E   V+ D  T   L        ++D A+ +  ++ +  +     
Sbjct: 366 GMVDDALKIKAAM--EKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYV 423

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            YT  I+   + GD   A  ++ +M +KG  P  V  + +ID     G +  A    +E 
Sbjct: 424 TYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEM 483

Query: 331 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
           + +G    + +Y+SL+ G C N K    AL+L+E MK    +P V    ALI+ L    +
Sbjct: 484 EKKGFVPDVYTYASLVHGHCVNGK-VDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGR 542

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL--VACERKDDVEV 427
                ++  DM   GL P+   YS L+  +  + + DV+V
Sbjct: 543 SEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKDVKV 582



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/433 (20%), Positives = 175/433 (40%), Gaps = 50/433 (11%)

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
           +C S +  + A ++L  +   G+  +   Y +L+    +      + E+   M N GIE 
Sbjct: 187 LCKSGR-VDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEGIEA 245

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
            V TY  L+D  + A  ++K    +  M++ NV  D  ++ A+I A  ++G + RA  VL
Sbjct: 246 TVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVL 305

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
            E                     C   G                ++     Y + IN   
Sbjct: 306 DE---------------------CVGNG----------------VEPNERTYGVLINGFC 328

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           + G  E A  +  DM  +GV  +++  + +ID     G V+ A +I    +  G+ + I 
Sbjct: 329 KIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIY 388

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +Y++L           +A  L   M  + + P   T   LI+  C    + +   +  +M
Sbjct: 389 TYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREM 448

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS---- 455
              G  P+ +TY++++    +K  +        + ++ G +P++  +  ++ G C     
Sbjct: 449 AEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKV 508

Query: 456 ----RRYE--KARTLNEHVLSFNSGRPQIENKWTS-LALMVYREAIVAGTIPTVEVVSKV 508
               + +E  K R    +V+++ +    +  +  S  A  +Y + + AG IP   + S +
Sbjct: 509 DVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSAL 568

Query: 509 LGCLQLPYNADIR 521
           +G L      D++
Sbjct: 569 VGSLHTDNRKDVK 581



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 131/285 (45%), Gaps = 4/285 (1%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           ++DG  K+G+V  A      M    V  + + +N+L+    +     R  ++L  M  E 
Sbjct: 183 VVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEIMENEG 242

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
                   TI  L+ + + A  + +   ++  +   N+ G   +YT  IN   + G+   
Sbjct: 243 IEATVGTYTI--LVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRR 300

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  V D+    GV P+E     LI+     G++EAA  +L + + QG+ +  I +++++ 
Sbjct: 301 AAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMID 360

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                     AL++   M+ + ++  + T N L   LC  ++L +   +L  M  +G+ P
Sbjct: 361 GYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVP 420

Query: 408 NTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           N +TY+ L+ + C+  D VE    L  +  E G  P++V +  +I
Sbjct: 421 NYVTYTTLISIHCKDGDMVE-ARRLFREMAEKGATPSVVTYNVMI 464



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 95/193 (49%), Gaps = 7/193 (3%)

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID---FAGHAGKVEAAF 324
           +P   ++ ++   ++G  + A  + DDM + GV  + +  ++L+D        G+V+   
Sbjct: 176 SPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEIL 235

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           EI++   N+GI   + +Y+ L+ + S A++  K   L+  MK+  +   V    A+I A 
Sbjct: 236 EIME---NEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAY 292

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C    + +  +VL +    G+ PN  TY +L+    +   +E   MLL+  +  GV  N 
Sbjct: 293 CRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQ 352

Query: 445 VMFKCII-GMCSR 456
           ++F  +I G C +
Sbjct: 353 IIFNTMIDGYCRK 365


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 191/436 (43%), Gaps = 21/436 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL------ 86
           N L R+GRI E + LL+ M   GL      Y      +CK    +       K+      
Sbjct: 192 NGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHI 251

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +PN  + +  ++ S+C   + S+ A  +   +QE G+  D   Y ++I     SG+    
Sbjct: 252 IPNVVIYS-AIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  EM+   I P+V TY ALI+   K G+  +A   Y  M  + + P+ + +N++I  
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDG 369

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   +D A D+   M  +     PD  T   L+     A ++D   E+   + +  + 
Sbjct: 370 FCKQDRLDAAEDMFYLMATK--GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLV 427

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y   I+     GD   A  +   M   GV PD V  + L+D     GK++ A E+
Sbjct: 428 ANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEM 487

Query: 327 ---LQEAKN--------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
              +Q++K          G+   +++Y+ L+    N   + +A ELYE M    + P   
Sbjct: 488 FKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T +++I  LC   +L +  ++   M S    PN +T++ L+    +   V+ GL L  + 
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM 607

Query: 436 KEDGVIPNLVMFKCII 451
              G++ + +++  +I
Sbjct: 608 GRRGIVADAIIYITLI 623



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 165/365 (45%), Gaps = 8/365 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +FN+L+    S      A      + + GL  D   +TTL+       +V    + FH+M
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                 PNV T+  L++G  + G++ +A      M    ++P ++ +  ++    + G  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++L +M  EV  + P+ +   A++ +    G+   A+ ++  + +  I   P+++T
Sbjct: 236 VSALNLLRKME-EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI--FPDLFT 292

Query: 274 ---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
              + +  CS +G W  A  +  +M ++ + PD V  +ALI+     GK   A E+  E 
Sbjct: 293 YNSMIVGFCS-SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEM 351

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +GI    I+Y+S++           A +++  M +    P V T   LI   C   ++
Sbjct: 352 LPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRI 411

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              ME+L +M   GL  NT+TY+ L+       D+   L L  Q    GV P++V    +
Sbjct: 412 DDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTL 471

Query: 451 I-GMC 454
           + G+C
Sbjct: 472 LDGLC 476



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 126/598 (21%), Positives = 250/598 (41%), Gaps = 82/598 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           ++R  R    I L + MERK +      ++      C   K   A+    +  KL  +P 
Sbjct: 89  VVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPD 148

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           + TF  L+  +C   + SE A      + E   + +   +TTL+    + G++     + 
Sbjct: 149 VVTFTTLLHGLCVEDRVSE-ALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALL 207

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVVFNALITACGQ 209
             M+  G++P   TYG ++DG  K G    A      M    ++ P+ V+++A+I +  +
Sbjct: 208 DRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCK 267

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G    A ++  EM  +   + PD  T  +++    ++G+   A ++ + + +  I    
Sbjct: 268 DGRHSDAQNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID----------------- 312
             Y   IN   + G +  A  +YD+M  +G+IP+ +  +++ID                 
Sbjct: 326 VTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYL 385

Query: 313 ----------------FAGHAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
                             G+ G  +++   E+L E   +G+    ++Y++L+       +
Sbjct: 386 MATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGD 445

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----------- 403
              AL+L + M S  + P + T N L+  LCD  +L   +E+   M+             
Sbjct: 446 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFN 505

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 461
           G+ P+ +TY+IL+     +        L  +    G++P+ + +  +I G+C + R ++A
Sbjct: 506 GVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEA 565

Query: 462 ---------RTLNEHVLSFNS--------GRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
                    ++ + +V++FN+        GR    +    L   + R  IVA  I  + +
Sbjct: 566 TQMFVSMGSKSFSPNVVTFNTLINGYCKAGRV---DDGLELFCEMGRRGIVADAIIYITL 622

Query: 505 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEE 560
           +        +    DI + ++ + GV  D +   N   ++ GF   E   RA ++LE+
Sbjct: 623 IYGFRKVGNINGALDIFQEMISS-GVYPDTITIRN---MLTGFWSKEELERAVAMLED 676



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 175/412 (42%), Gaps = 26/412 (6%)

Query: 15  NGKHANYAHDVSE--------QLHSYNRLI----RQGRISECIDLLEDM-ERKGLLDMDK 61
           +G+H++  +  +E         L +YN +I      GR S+   LL++M ERK   D+  
Sbjct: 268 DGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV-V 326

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            Y+A      K  K  + A  + +++P    P   T+N ++         + A  +  L+
Sbjct: 327 TYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM 386

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
              G   D   +TTLI     + ++D   E+ HEM   G+  N  TY  LI G    G +
Sbjct: 387 ATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDL 446

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------VHP--- 229
             A      M S  V PD V  N L+     +G +  A ++   M          HP   
Sbjct: 447 NAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNG 506

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           V+PD +T   L+    N G+   A E+Y+ +    I      Y+  I+   +    + A 
Sbjct: 507 VEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            ++  M  K   P+ V  + LI+    AG+V+   E+  E   +GI    I Y +L+   
Sbjct: 567 QMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGF 626

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
               N   AL++++ M S  + P   T+  ++T     ++L + + +L D++
Sbjct: 627 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 678



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 146/353 (41%), Gaps = 23/353 (6%)

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A D+ ++M     P+ P  +    LM       + D    +Y+ + +  I+     
Sbjct: 59  GLEDAIDLFSDM-LRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYS 116

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           + I I C        FA S +  +TK G+ PD V  + L+       +V  A +   +  
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMF 176

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
                  ++++++LM          +A+ L + M    L+PT  T   ++  +C      
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 392 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC- 449
             + +L  M+ +  + PN + YS ++ +  +         L ++ +E G+ P+L  +   
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 450 IIGMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 497
           I+G CS  R+  A         R ++  V+++N+       E K+   A + Y E +  G
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAEL-YDEMLPRG 355

Query: 498 TIP-TVEVVSKVLG-CLQLPYN-ADIRERLVENLGVSADALKRSNLCSLIDGF 547
            IP T+   S + G C Q   + A+    L+   G S D        +LIDG+
Sbjct: 356 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVF---TFTTLIDGY 405



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 40/197 (20%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           LI +G+  E  +L E+M  +G++     Y +    +CK Q  + EA + F  + +    P
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK-QSRLDEATQMFVSMGSKSFSP 579

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + TFN                                   TLI    K+G+VD   E+F
Sbjct: 580 NVVTFN-----------------------------------TLINGYCKAGRVDDGLELF 604

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM   GI  +   Y  LI G  K G +  A   +  M S  V PD +    ++T     
Sbjct: 605 CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSK 664

Query: 211 GAVDRAFDVLAEMNAEV 227
             ++RA  +L ++   V
Sbjct: 665 EELERAVAMLEDLQMSV 681


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/500 (22%), Positives = 222/500 (44%), Gaps = 20/500 (4%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P+LS+ N+L+    S            L+  AG + D   +   +  C  +G +D   
Sbjct: 119 PLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEAL 178

Query: 148 EVFHEM--VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            +   M        P+  +Y  +I G  ++G+ + A   +  M  + V P+++ +N +I 
Sbjct: 179 AMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMID 238

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G ++  F +  +M  +     P+ +T   L+     AG++D  R +   +  Y++
Sbjct: 239 GHVKGGDLEAGFRLRDQMLQDGR--KPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSM 296

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 Y+I  +  ++TGD     S++ +  KKGVI      S L++     GKV  A +
Sbjct: 297 LPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQ 356

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L+   + G+      Y++L+      ++ Q A  ++E MKS  ++P   T NALI  LC
Sbjct: 357 VLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLC 416

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             + + +  +++ +M+  G+ P+  T++ L+ A  R   +E    +LS  ++ G+  N++
Sbjct: 417 KMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVI 476

Query: 446 MFKCII-GMC--SRRYEKARTLNEHVLS--------FNS-GRPQIENKWTSLALMVYREA 493
            F  ++   C   +  E    L++ +          +NS     IE+  T  A ++  + 
Sbjct: 477 SFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKM 536

Query: 494 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGEY 550
             +G   ++   + +L  L      D  E L+ NL   G+  D +  + + S     G+ 
Sbjct: 537 KSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDT 596

Query: 551 DPRAFSLLEEAASFGIVPCV 570
           D RA  LL+E   + I P +
Sbjct: 597 D-RALELLQEMHKYDIRPTL 615



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 184/398 (46%), Gaps = 15/398 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-----QKAIKEAF 81
           +YN +I    + G +     L + M + G       Y+     +C++      +A+ +  
Sbjct: 232 TYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEM 291

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             + ++P+    T+++L      + DS     +     + G+       + L+    K G
Sbjct: 292 TSYSMLPDGF--TYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDG 349

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KV    +V   +V+ G+ P    Y  LI+G  +   +  AF  +  M+S++++PD + +N
Sbjct: 350 KVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYN 409

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           ALI    +   +  A D++ EM  E   VDP   T   L+ A   AGQ+++   V   + 
Sbjct: 410 ALINGLCKMEMITEAEDLVMEM--EKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQ 467

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              IK     +   +    + G    A ++ DDM  K V+P+    +++ID    +G  E
Sbjct: 468 DKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTE 527

Query: 322 AAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            AF ++++ K+ G+S  I +Y+ L+ G C N++   +A EL  ++ +  L+P V + N +
Sbjct: 528 QAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQ-IDEAEELIYNLTNQGLRPDVVSYNTI 586

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           I+A C+     + +E+L +M    + P   TY  LL A
Sbjct: 587 ISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSA 624



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 190/429 (44%), Gaps = 11/429 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF--- 83
           SYN +I    R G+ S+ + + ++M  +G+      Y+       K    ++  FR    
Sbjct: 197 SYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGHVKGGD-LEAGFRLRDQ 255

Query: 84  -FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             +    P + T+N+L+S    +   +    ++  +    +  D   Y+ L     ++G 
Sbjct: 256 MLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGD 315

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
              M  +F E +  G+    +T   L++G  K G+VAKA     ++    + P   ++N 
Sbjct: 316 SRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNT 375

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    Q   +  AF +  +M +    + PDHIT  AL+        +  A ++   + K
Sbjct: 376 LINGYCQVRDLQGAFSIFEQMKSR--HIRPDHITYNALINGLCKMEMITEAEDLVMEMEK 433

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             +  + E +   I+   + G  E   +V  DM  KG+  + +   +++      GK+  
Sbjct: 434 SGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPE 493

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  IL +  ++ +      Y+S++ A   +   ++A  L E MKS  +  ++ T N L+ 
Sbjct: 494 AVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLK 553

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC   Q+ +  E++ ++ + GL P+ ++Y+ ++ AC  K D +  L LL +  +  + P
Sbjct: 554 GLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRP 613

Query: 443 NLVMFKCII 451
            L  +  ++
Sbjct: 614 TLRTYHPLL 622



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 175/365 (47%), Gaps = 17/365 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------IKEA 80
           +YN L+    R GR+ E   L+++M    +L     Y   F  + ++  +        E+
Sbjct: 267 TYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGES 326

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +   ++   T S   +L  +C   K ++ A QVL ++   GL     +Y TLI    + 
Sbjct: 327 LKKGVIIGAYTCSI--LLNGLCKDGKVAK-AEQVLEMLVHTGLVPTTAIYNTLINGYCQV 383

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
             +   F +F +M +  I P+  TY ALI+G  K   + +A      M    V P    F
Sbjct: 384 RDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETF 443

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-M 259
           N LI A G++G +++ F VL++M  +   +  + I+ G+++KA    G++  A  +   M
Sbjct: 444 NTLIDAYGRAGQLEKCFTVLSDMQDK--GIKSNVISFGSVVKAFCKNGKIPEAVAILDDM 501

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           IHK ++    +VY   I+   ++G  E A  + + M   GV       + L+       +
Sbjct: 502 IHK-DVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQ 560

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A E++    NQG+   ++SY++++ AC N  +  +ALEL + M    ++PT+ T + 
Sbjct: 561 IDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHP 620

Query: 380 LITAL 384
           L++AL
Sbjct: 621 LLSAL 625



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 155/348 (44%), Gaps = 7/348 (2%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           ++ L R G     + L  +  +KG++            +CK  K  K       LV    
Sbjct: 307 FDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGL 366

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PT + +N L++     +D +GAF +   ++   ++ D   Y  LI    K   +    +
Sbjct: 367 VPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAED 426

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM  +G++P+V T+  LID   +AGQ+ K F     M+ K +K + + F +++ A  
Sbjct: 427 LVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFC 486

Query: 209 QSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
           ++G +  A  +L +M   +H  V P+     +++ A   +G  ++A  + + +    +  
Sbjct: 487 KNGKIPEAVAILDDM---IHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSA 543

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +   Y + +    +    + A  +  ++T +G+ PD V  + +I    + G  + A E+L
Sbjct: 544 SIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELL 603

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
           QE     I   + +Y  L+ A  +A        LY+HM    ++P+ S
Sbjct: 604 QEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSS 651



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 93/198 (46%), Gaps = 11/198 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK----- 75
           V   + ++N LI    R G++ +C  +L DM+ KG+      + +     CK+ K     
Sbjct: 436 VDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAV 495

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           AI +      +VPN  +  +N ++     S  +E AF ++  ++ +G+ A    Y  L+ 
Sbjct: 496 AILDDMIHKDVVPNAQV--YNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLK 553

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K+ ++D   E+ + + N G+ P+V +Y  +I  C   G   +A      M   +++P
Sbjct: 554 GLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRP 613

Query: 196 DRVVFNALITACGQSGAV 213
               ++ L++A G +G V
Sbjct: 614 TLRTYHPLLSALGSAGRV 631



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 7/169 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS--- 93
           + G+I E + +L+DM  K ++   +VY++   +        ++AF   + + +  +S   
Sbjct: 487 KNGKIPEAVAILDDMIHKDVVPNAQVYNS-IIDAYIESGGTEQAFLLVEKMKSSGVSASI 545

Query: 94  -TFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
            T+N+L+  +C +S+  E    +  L  + GL+ D   Y T+I+ C   G  D   E+  
Sbjct: 546 FTYNLLLKGLCKNSQIDEAEELIYNLTNQ-GLRPDVVSYNTIISACCNKGDTDRALELLQ 604

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           EM    I P + TY  L+     AG+V      Y  M  KNV+P   ++
Sbjct: 605 EMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIY 653



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 13/188 (6%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           DV      YN +I      G   +   L+E M+  G+      Y+     +CK+ + I E
Sbjct: 505 DVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQ-IDE 563

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A      + N    P + ++N ++S C +  D++ A ++L+ + +  ++   + Y  L++
Sbjct: 564 AEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLS 623

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI----MRSK 191
               +G+V  M  ++  MV+  +EP+   YG   +  +K   + K     GI        
Sbjct: 624 ALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCENESKVASLKKEMSEKGIAFDDTERT 683

Query: 192 NVKPDRVV 199
           N++ DR++
Sbjct: 684 NLELDRII 691


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/532 (22%), Positives = 240/532 (45%), Gaps = 36/532 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---------KAI 77
           +YN +I    + GR+++ + + E ME+ G    D  Y+   + +C  +          A+
Sbjct: 325 TYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAV 384

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           KE F        PT+ TF  L++    ++  + A ++   +  +  K D +++  LI + 
Sbjct: 385 KEGF-------TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSL 437

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K  ++    E+ +E+   G+ PNV TY ++IDG  K+G+V  A     +M     +P+ 
Sbjct: 438 IKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNA 497

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             +N+L+    +   + +A  +L +M  +   + P+ IT   L++   +    D A  ++
Sbjct: 498 WTYNSLMYGLVKDKKLHKAMALLTKMQKD--GIIPNVITYTTLLQGQCDEHDFDNAFRLF 555

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           +M+ +  +K     Y +  +   + G  E A   Y  + +KGV   +V+ + LID    A
Sbjct: 556 EMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKA 612

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G  + A  +++   ++G +    +YS L+ A    K   +AL + + M    +K T+   
Sbjct: 613 GNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAY 672

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LI  +    +      + ++M S G  P+  TY++ + +  ++  +E    L+ + + 
Sbjct: 673 TILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMER 732

Query: 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 497
           +GV P++V +  +I  C       R  +   L    G     N WT   L+ +   ++ G
Sbjct: 733 EGVAPDVVTYNILIDGCGHMGYIDRAFS--TLKRMVGASCEPNYWTYCLLLKH---LLKG 787

Query: 498 TIPTVEVV--SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
            +  V  V  S +   ++L     + ER+V++ G++      S   SLI GF
Sbjct: 788 NLAYVRSVDTSGMWNLIELDITWQLLERMVKH-GLNPTVTTYS---SLIAGF 835



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 196/489 (40%), Gaps = 63/489 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N LI++ R+ E  +LL ++   GL+     Y +     CKS K +  A    K++     
Sbjct: 435 NSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK-VDIALEVLKMMERDGC 493

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+N LM      K    A  +L  +Q+ G+  +   YTTL+         D  F 
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 553

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  M   G++P+ H Y  L D   KAG   +A  AY  +  K V   +V +  LI    
Sbjct: 554 LFEMMEQNGLKPDEHAYAVLTDALCKAG---RAEEAYSFIVRKGVALTKVYYTTLIDGFS 610

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G  D A  ++  M  E     PD  T   L+ A     +++ A  +   +    IK T
Sbjct: 611 KAGNTDFAATLIERMIDE--GCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCT 668

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMT-------------------------------- 296
              YTI I+   + G  + A  +Y++MT                                
Sbjct: 669 IFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLIL 728

Query: 297 ---KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG------ 347
              ++GV PD V  + LID  GH G ++ AF  L+            +Y  L+       
Sbjct: 729 KMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGN 788

Query: 348 -----ACSNAKNWQK-----ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
                +   +  W         +L E M    L PTV+T ++LI   C   +L +   +L
Sbjct: 789 LAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLL 848

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMCSR 456
             M   GL PN   Y++L+  C      E  L  +S   E G  P L  ++  ++G+C+ 
Sbjct: 849 DHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNE 908

Query: 457 -RYEKARTL 464
             +EK ++L
Sbjct: 909 GDFEKVKSL 917



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 145/345 (42%), Gaps = 21/345 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+++L+      K    A  +L  +   G+K     YT LI    + GK D    
Sbjct: 631 TPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKR 690

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +++EM ++G +P+  TY   I+   K G++  A      M  + V PD V +N LI  CG
Sbjct: 691 MYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 750

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G +DRAF  L  M       +P++ T   L+K     G +   R V       +  G 
Sbjct: 751 HMGYIDRAFSTLKRMVGA--SCEPNYWTYCLLLKHLLK-GNLAYVRSV-------DTSGM 800

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             +  + I        W+    + + M K G+ P     S+LI     AG++E A  +L 
Sbjct: 801 WNLIELDIT-------WQ----LLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLD 849

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G+S     Y+ L+  C + K ++KAL     M     +P + +   L+  LC+  
Sbjct: 850 HMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEG 909

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
              K   +  D+  LG   + + + IL     +   V++   +LS
Sbjct: 910 DFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLS 954



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 152/336 (45%), Gaps = 4/336 (1%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           +LVQ+ GL  D   Y T+I +  K G +      F  ++  G+EP   T  AL+ G  + 
Sbjct: 173 QLVQD-GLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRT 231

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G++ KA   + +M     + +   +  LI    ++  V  A  +   M  +     P+  
Sbjct: 232 GELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRD--GCSPNVR 289

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
               L+     +G+V  AR ++  + +  +  +   Y   I   S+ G    A  + + M
Sbjct: 290 AFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELM 349

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            K G  PD+   + LI +     K E A E+L  A  +G +  ++++++L+     A+ +
Sbjct: 350 EKNGCHPDDWTYNTLI-YGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKF 408

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             AL +   M S K K  +     LI +L   D+L +  E+L+++ + GL PN ITY+ +
Sbjct: 409 DDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSI 468

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +    +   V++ L +L   + DG  PN   +  ++
Sbjct: 469 IDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLM 504



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 165/370 (44%), Gaps = 12/370 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+N ++       D   A +  RL+ E GL+ +      L+    ++G++     +
Sbjct: 181 PDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWL 240

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M   G + N ++Y  LI G  +A  V +A   + +M+     P+   F  LI+   +
Sbjct: 241 FLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCK 300

Query: 210 SGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           SG V  A   FD + +     + V P  +T  A++   +  G+++ A ++ +++ K    
Sbjct: 301 SGRVGDARLLFDAMPQ-----NGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCH 355

Query: 267 GTPEVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                Y T+    C Q    E A  + ++  K+G  P  V  + LI+    A K + A  
Sbjct: 356 PDDWTYNTLIYGLCDQKT--EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALR 413

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +  +  +    + +  +  L+ +       ++A EL   + +  L P V T  ++I   C
Sbjct: 414 MKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYC 473

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              ++   +EVL  M+  G  PN  TY+ L+    +   +   + LL++ ++DG+IPN++
Sbjct: 474 KSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVI 533

Query: 446 MFKCII-GMC 454
            +  ++ G C
Sbjct: 534 TYTTLLQGQC 543



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 141/324 (43%), Gaps = 7/324 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++ +L+     +K    A  +  +++  G   + + +T LI+   KSG+V     +F  M
Sbjct: 255 SYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G+ P+V TY A+I G +K G++  A     +M      PD   +N LI      G  
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI-----YGLC 369

Query: 214 DRAFDVLAEM--NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           D+  +   E+  NA      P  +T   L+     A + D A  +   +     K   +V
Sbjct: 370 DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQV 429

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   IN   +    + A  + ++++  G++P+ +  +++ID    +GKV+ A E+L+  +
Sbjct: 430 FGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMME 489

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G      +Y+SLM      K   KA+ L   M+   + P V T   L+   CD     
Sbjct: 490 RDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFD 549

Query: 392 KTMEVLSDMKSLGLCPNTITYSIL 415
               +   M+  GL P+   Y++L
Sbjct: 550 NAFRLFEMMEQNGLKPDEHAYAVL 573



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 128/321 (39%), Gaps = 23/321 (7%)

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +P+ Y  A+   ++    E+   VY  + + G++PD V  + +I      G +  A    
Sbjct: 147 SPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCF 206

Query: 328 QEAKNQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +     G+     + ++L +G C   +  +KA  L+  M  +  +    +   LI  LC+
Sbjct: 207 RLLLEGGLEPETFTCNALVLGYCRTGE-LRKACWLFLMMPLMGCQRNEYSYTILIQGLCE 265

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              + + + +   MK  G  PN   ++ L+    +   V    +L     ++GV+P+++ 
Sbjct: 266 AKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMT 325

Query: 447 FKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALM-------------VYR 491
           +  +I   S+  R   A  + E ++  N   P   + WT   L+             +  
Sbjct: 326 YNAMIVGYSKLGRMNDALKIKE-LMEKNGCHP---DDWTYNTLIYGLCDQKTEEAEELLN 381

Query: 492 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 551
            A+  G  PTV   + ++    +    D   R+   +  S   L       LI+   + D
Sbjct: 382 NAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKD 441

Query: 552 --PRAFSLLEEAASFGIVPCV 570
               A  LL E ++ G+VP V
Sbjct: 442 RLKEAKELLNEISANGLVPNV 462


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 207/480 (43%), Gaps = 65/480 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----- 89
           L + G + +  +LL  +   G+  ++ + ++   + C     + +A   FK + +     
Sbjct: 83  LCKAGELDKAKELLGQLRESGV-KLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCV 141

Query: 90  PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + TFN +L  +C+  + SE AF +   + +AG + +   Y+TL+    K+G++D    
Sbjct: 142 PDVVTFNSLLKGLCSGERMSE-AFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACR 200

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF-------- 200
           ++ EMV     P++  Y + + G  KA +VA+A      M +K  K D V F        
Sbjct: 201 LWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILC 260

Query: 201 ---------NALITACGQSGAVDRAFDVLAEMNAEVHPVD-----------------PDH 234
                    N +I    +SG +D A     EM +  HP                   PD 
Sbjct: 261 KKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDG 320

Query: 235 ITIGALMKA-------------------CANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           + +   MK+                      A Q+D A+E+   +  Y +      Y+  
Sbjct: 321 VLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSAL 380

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           ++   + G  + AC + ++M+K+GV PD    +++++    AGKV+ A   L+  K +G 
Sbjct: 381 VDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGS 440

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           +  +++Y++L+     A    +A+     M + K  P V +   +ITALC   Q      
Sbjct: 441 TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHA 500

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +  +M   G+ P+T+ Y  LL    R    ++ L LL   K     P+ VM K ++ G+C
Sbjct: 501 IFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELL---KTSLCKPDFVMHKMVLDGLC 557



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 168/372 (45%), Gaps = 25/372 (6%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+N  +   A +   + A++  + +Q  G   D   Y+ ++    K+G++D   E+  ++
Sbjct: 40  TYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQL 99

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVVFNALITACGQSGA 212
             +G++ NV TY  +IDGC KA +V  A   +  M S     PD V FN+L+        
Sbjct: 100 RESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGER 159

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEV 271
           +  AF VL E  A+    +P+ I+   L+     AG++D A  ++ +M+ K  +      
Sbjct: 160 MSEAF-VLFEYMAKAG-CEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAY 217

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF---AGHA----------- 317
            +     C      E AC     M  KG   D V  S +I      GHA           
Sbjct: 218 TSFVTGLCKANRVAE-ACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHL 276

Query: 318 ---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LK 371
              G ++ A +  +E  ++        +++L+ A   +K     + L++ MKS+K     
Sbjct: 277 CRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCP 336

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P + T N ++  LC   QL +  E++++M + GL P+ +TYS L+    +   ++    L
Sbjct: 337 PNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDL 396

Query: 432 LSQAKEDGVIPN 443
           L +  ++GV P+
Sbjct: 397 LEEMSKEGVFPD 408



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 166/359 (46%), Gaps = 22/359 (6%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           L ++ G +     Y   +   AK+      +E F +M   G  P+  TY  ++ G  KAG
Sbjct: 28  LGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAG 87

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           ++ KA    G +R   VK + + ++ +I  C ++  VD A ++   M++    V PD +T
Sbjct: 88  ELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCV-PDVVT 146

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +L+K   +  ++  A  +++ + K   +     Y+  ++   + G  + AC ++++M 
Sbjct: 147 FNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMV 206

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA------CS 350
           +K  +PD V  ++ +     A +V  A +  ++   +G     +++S+++G         
Sbjct: 207 EKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAE 266

Query: 351 NAKN-----------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            A+N             +A + +E M S    P+    N LI A+C   +LP  + +   
Sbjct: 267 EAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQR 326

Query: 400 MKSLG--LC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           MKS+    C PN  TY+I++    +   ++    L+++    G+ P++V +  ++ G+C
Sbjct: 327 MKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLC 385


>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
          Length = 880

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 160/365 (43%), Gaps = 5/365 (1%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++ ++ +M       D +    V + ++E G       Y  LI    K GK+    EV  
Sbjct: 449 IAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSR 508

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G++ N+ TY  +I+G  K    A AF  +  M  + +KPD +++N +I+A    G
Sbjct: 509 VMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMG 568

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA   + EM    H   P   T   ++   A +G + R+ EV+ M+ +     T   
Sbjct: 569 NMDRAIQTVKEMQKLRH--RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 626

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   IN   +      A  + D+MT  GV  +E   + ++      G    AFE     +
Sbjct: 627 FNGLINGLVEKRQ---AVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ 683

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N+G+ V I +Y +L+ AC  +   Q AL + + M +  +       N LI        + 
Sbjct: 684 NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVW 743

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  MK  G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I
Sbjct: 744 EAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLI 803

Query: 452 GMCSR 456
              +R
Sbjct: 804 KGWAR 808



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 152/329 (46%), Gaps = 9/329 (2%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L T++M+++     KD   AF V   + + G+K D  LY  +I+     G +D   +   
Sbjct: 519 LKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVK 578

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM      P   T+  +I G AK+G + ++   + +MR     P    FN LI     +G
Sbjct: 579 EMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLI-----NG 633

Query: 212 AVDR--AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            V++  A ++L EM   +  V  +  T   +M+  A+ G   +A E +  +    +    
Sbjct: 634 LVEKRQAVEILDEMT--LAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDI 691

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++Q+
Sbjct: 692 FTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQ 751

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K +G+   I +Y+S + ACS A +  +A +  E M+++ +KP + T   LI        
Sbjct: 752 MKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASL 811

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVA 418
             K +    +MK++G+ P+   Y  LL +
Sbjct: 812 PEKALSCYEEMKAMGIKPDKAVYHCLLTS 840



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 9/350 (2%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E A  ++R ++E G+ A   +Y T++              VF  +   G  P V TYG L
Sbjct: 431 ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCL 490

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I+   K G+++KA     +M+ + VK +   ++ +I    +      AF V  +M  E  
Sbjct: 491 INLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE-- 548

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + PD I    ++ A    G +DRA +  K + K   + T   +   I+  +++GD   +
Sbjct: 549 GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRS 608

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA--AFEILQEAKNQGISVGIISYSSLM 346
             V+D M + G +P     + LI+     G VE   A EIL E    G+S    +Y+ +M
Sbjct: 609 LEVFDMMRRCGCVPTVHTFNGLIN-----GLVEKRQAVEILDEMTLAGVSANEHTYTKIM 663

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
              ++  +  KA E +  +++  L   + T  AL+ A C   ++   + V  +M +  + 
Sbjct: 664 QGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIP 723

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            N+  Y+IL+    R+ DV     L+ Q K++GV P++  +   I  CS+
Sbjct: 724 RNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSK 773



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 163/357 (45%), Gaps = 12/357 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N   + G+IS+ +++   M+ +G+    K Y +   N     K    AF  F    K   
Sbjct: 492 NLYTKVGKISKALEVSRVMKEEGVKHNLKTY-SMMINGFVKLKDWANAFAVFEDMVKEGM 550

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N ++S      + + A Q ++ +Q+   +   + +  +I   AKSG +    E
Sbjct: 551 KPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLE 610

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF  M   G  P VHT+  LI+G  +  Q  +       M    V  +   +  ++    
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEILDE---MTLAGVSANEHTYTKIMQGYA 667

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G   +AF+    +  E   +D D  T  AL+KAC  +G++  A  V K +   NI   
Sbjct: 668 SVGDTGKAFEYFTRLQNE--GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 725

Query: 269 PEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
             VY I I+  ++ GD WE A  +   M K+GV PD    ++ I     AG +  A + +
Sbjct: 726 SFVYNILIDGWARRGDVWE-AADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 784

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +E +  G+   I +Y++L+   + A   +KAL  YE MK++ +KP  +  + L+T+L
Sbjct: 785 EEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 841



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 107/525 (20%), Positives = 218/525 (41%), Gaps = 67/525 (12%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+ + F +++       D   A +    ++  G+    ++YT+LI   A    +
Sbjct: 301 FEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDM 360

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D       +M   GIE ++ TY  ++ G +KAG    A   +   +  +   +  ++  +
Sbjct: 361 DEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKI 420

Query: 204 ITACGQSGAVDRAFDVLAEMNAE--------VHPV------------------------- 230
           I A  Q+  ++RA  ++ EM  E         H +                         
Sbjct: 421 IYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGF 480

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  +T G L+      G++ +A EV +++ +  +K   + Y++ IN   +  DW  A +
Sbjct: 481 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 540

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++DM K+G+ PD +  + +I      G ++ A + ++E +         ++  ++   +
Sbjct: 541 VFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYA 600

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            + + +++LE+++ M+     PTV T N LI  L +  Q    +E+L +M   G+  N  
Sbjct: 601 KSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQ---AVEILDEMTLAGVSANEH 657

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
           TY+ ++       D        ++ + +G+  ++  ++ ++  C +              
Sbjct: 658 TYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCK-------------- 703

Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENL 528
             SGR Q        AL V +E + A  IP    V  +L         D+ E   L++ +
Sbjct: 704 --SGRMQ-------SALAVTKE-MSARNIPRNSFVYNIL-IDGWARRGDVWEAADLIQQM 752

Query: 529 ---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
              GV  D    ++  S     G+ + RA   +EE  + G+ P +
Sbjct: 753 KKEGVKPDIHTYTSFISACSKAGDMN-RATQTIEEMEALGVKPNI 796



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS   H+Y ++++     G   +  +    ++ +GL D+D   +      C     ++ A
Sbjct: 652 VSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGL-DVDIFTYEALLKACCKSGRMQSA 710

Query: 81  FRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               K      +P  +   +N+L+   A   D   A  +++ +++ G+K D   YT+ I+
Sbjct: 711 LAVTKEMSARNIPRNSF-VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFIS 769

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
            C+K+G ++   +   EM   G++PN+ TY  LI G A+A    KA   Y  M++  +KP
Sbjct: 770 ACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKP 829

Query: 196 DRVVFNALITACGQSGAVDRAF 217
           D+ V++ L+T+     ++  A+
Sbjct: 830 DKAVYHCLLTSLLSRASIAEAY 851



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 36/171 (21%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+++G+                     
Sbjct: 719 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------------------- 757

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   +S C+ + D   A Q +  ++  G+K + K YTTLI   
Sbjct: 758 -----------KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 806

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           A++   +     + EM   GI+P+   Y  L+        +A+A+   G+M
Sbjct: 807 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 857


>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
          Length = 949

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 160/365 (43%), Gaps = 5/365 (1%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++ ++ +M       D +    V + ++E G       Y  LI    K GK+    EV  
Sbjct: 449 IAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSR 508

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G++ N+ TY  +I+G  K    A AF  +  M  + +KPD +++N +I+A    G
Sbjct: 509 VMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMG 568

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +DRA   + EM    H   P   T   ++   A +G + R+ EV+ M+ +     T   
Sbjct: 569 NMDRAIQTVKEMQKLRH--RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 626

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   IN   +      A  + D+MT  GV  +E   + ++      G    AFE     +
Sbjct: 627 FNGLINGLVEKRQ---AVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ 683

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           N+G+ V I +Y +L+ AC  +   Q AL + + M +  +       N LI        + 
Sbjct: 684 NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVW 743

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  MK  G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I
Sbjct: 744 EAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLI 803

Query: 452 GMCSR 456
              +R
Sbjct: 804 KGWAR 808



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 152/329 (46%), Gaps = 9/329 (2%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L T++M+++     KD   AF V   + + G+K D  LY  +I+     G +D   +   
Sbjct: 519 LKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVK 578

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM      P   T+  +I G AK+G + ++   + +MR     P    FN LI     +G
Sbjct: 579 EMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLI-----NG 633

Query: 212 AVDR--AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            V++  A ++L EM   +  V  +  T   +M+  A+ G   +A E +  +    +    
Sbjct: 634 LVEKRQAVEILDEMT--LAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDI 691

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++Q+
Sbjct: 692 FTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQ 751

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K +G+   I +Y+S + ACS A +  +A +  E M+++ +KP + T   LI        
Sbjct: 752 MKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASL 811

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVA 418
             K +    +MK++G+ P+   Y  LL +
Sbjct: 812 PEKALSCYEEMKAMGIKPDKAVYHCLLTS 840



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 9/350 (2%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E A  ++R ++E G+ A   +Y T++              VF  +   G  P V TYG L
Sbjct: 431 ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCL 490

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I+   K G+++KA     +M+ + VK +   ++ +I    +      AF V  +M  E  
Sbjct: 491 INLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKE-- 548

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + PD I    ++ A    G +DRA +  K + K   + T   +   I+  +++GD   +
Sbjct: 549 GMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRS 608

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA--AFEILQEAKNQGISVGIISYSSLM 346
             V+D M + G +P     + LI+     G VE   A EIL E    G+S    +Y+ +M
Sbjct: 609 LEVFDMMRRCGCVPTVHTFNGLIN-----GLVEKRQAVEILDEMTLAGVSANEHTYTKIM 663

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
              ++  +  KA E +  +++  L   + T  AL+ A C   ++   + V  +M +  + 
Sbjct: 664 QGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIP 723

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            N+  Y+IL+    R+ DV     L+ Q K++GV P++  +   I  CS+
Sbjct: 724 RNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSK 773



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 163/357 (45%), Gaps = 12/357 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N   + G+IS+ +++   M+ +G+    K Y +   N     K    AF  F    K   
Sbjct: 492 NLYTKVGKISKALEVSRVMKEEGVKHNLKTY-SMMINGFVKLKDWANAFAVFEDMVKEGM 550

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N ++S      + + A Q ++ +Q+   +   + +  +I   AKSG +    E
Sbjct: 551 KPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLE 610

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF  M   G  P VHT+  LI+G  +  Q  +       M    V  +   +  ++    
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEILDE---MTLAGVSANEHTYTKIMQGYA 667

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G   +AF+    +  E   +D D  T  AL+KAC  +G++  A  V K +   NI   
Sbjct: 668 SVGDTGKAFEYFTRLQNE--GLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 725

Query: 269 PEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
             VY I I+  ++ GD WE A  +   M K+GV PD    ++ I     AG +  A + +
Sbjct: 726 SFVYNILIDGWARRGDVWE-AADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 784

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +E +  G+   I +Y++L+   + A   +KAL  YE MK++ +KP  +  + L+T+L
Sbjct: 785 EEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 841



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 107/525 (20%), Positives = 218/525 (41%), Gaps = 67/525 (12%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+ + F +++       D   A +    ++  G+    ++YT+LI   A    +
Sbjct: 301 FEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDM 360

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D       +M   GIE ++ TY  ++ G +KAG    A   +   +  +   +  ++  +
Sbjct: 361 DEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKI 420

Query: 204 ITACGQSGAVDRAFDVLAEMNAE--------VHPV------------------------- 230
           I A  Q+  ++RA  ++ EM  E         H +                         
Sbjct: 421 IYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGF 480

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  +T G L+      G++ +A EV +++ +  +K   + Y++ IN   +  DW  A +
Sbjct: 481 TPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFA 540

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++DM K+G+ PD +  + +I      G ++ A + ++E +         ++  ++   +
Sbjct: 541 VFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYA 600

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            + + +++LE+++ M+     PTV T N LI  L +  Q    +E+L +M   G+  N  
Sbjct: 601 KSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQ---AVEILDEMTLAGVSANEH 657

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
           TY+ ++       D        ++ + +G+  ++  ++ ++  C +              
Sbjct: 658 TYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCK-------------- 703

Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENL 528
             SGR Q        AL V +E + A  IP    V  +L         D+ E   L++ +
Sbjct: 704 --SGRMQS-------ALAVTKE-MSARNIPRNSFVYNIL-IDGWARRGDVWEAADLIQQM 752

Query: 529 ---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
              GV  D    ++  S     G+ + RA   +EE  + G+ P +
Sbjct: 753 KKEGVKPDIHTYTSFISACSKAGDMN-RATQTIEEMEALGVKPNI 796



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 98/202 (48%), Gaps = 11/202 (5%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS   H+Y ++++     G   +  +    ++ +GL D+D   +      C     ++ A
Sbjct: 652 VSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGL-DVDIFTYEALLKACCKSGRMQSA 710

Query: 81  FRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               K      +P  +   +N+L+   A   D   A  +++ +++ G+K D   YT+ I+
Sbjct: 711 LAVTKEMSARNIPRNSF-VYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFIS 769

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
            C+K+G ++   +   EM   G++PN+ TY  LI G A+A    KA   Y  M++  +KP
Sbjct: 770 ACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKP 829

Query: 196 DRVVFNALITACGQSGAVDRAF 217
           D+ V++ L+T+     ++  A+
Sbjct: 830 DKAVYHCLLTSLLSRASIAEAY 851



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 36/171 (21%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+++G+                     
Sbjct: 719 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------------------- 757

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   +S C+ + D   A Q +  ++  G+K + K YTTLI   
Sbjct: 758 -----------KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 806

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           A++   +     + EM   GI+P+   Y  L+        +A+A+   G+M
Sbjct: 807 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAYIYSGVM 857


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 202/467 (43%), Gaps = 60/467 (12%)

Query: 69  NVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           N C  +    +A  +F L+     NPT+ TFN +++      +   A ++   ++E G  
Sbjct: 99  NACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFS 158

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ------V 178
            +  +Y TL+    K  ++D    ++ EM   GI P+  T+  L+ G  K G+      +
Sbjct: 159 PNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRL 218

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            K     G++      PDR +F+  ++    +G +D A + L +M  +   + P  I   
Sbjct: 219 LKDISVLGLL------PDRSLFDISVSGLCWAGRLDEAMEFLMDMLEK--GLSPSIIAFN 270

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--------------------------- 271
           +++ A + AG  D+A E YK++  + +  +P                             
Sbjct: 271 SVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEK 330

Query: 272 --------YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                   +T+ ++   + GD   A S++ +M ++G+ PD V  SA ID     G VE A
Sbjct: 331 GLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEA 390

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           + +  E   +G+     +Y+SL+          +AL+L + M+   L P + T N +I  
Sbjct: 391 YNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGG 450

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++   + V  DM   GL P+ ITY+ L+    +  D+     L+++    G  P+
Sbjct: 451 LCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPD 510

Query: 444 LVMFKCII-GMC-SRRYEKA-----RTLNEHVLSFNSGRPQIENKWT 483
           L  +   I G C SRR  +A       ++  +LSF+   P   N  T
Sbjct: 511 LTTYNIRIHGFCSSRRMNRAVLMLDELVSAGILSFSFACPPTLNAHT 557



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 163/371 (43%), Gaps = 8/371 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+ S   +L  +     D    +++ + V   G +     ++ +I    + G +     +
Sbjct: 19  PSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGESL 78

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            H M     EPN   Y  +I+ C   G+ + A   + +M  +   P  V FN +I A  +
Sbjct: 79  LHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCK 138

Query: 210 SGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            G V  A   FD L EM        P+ I    LM       ++D+A  +Y+ + K  I 
Sbjct: 139 EGNVVEARKLFDGLKEMG-----FSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIA 193

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                + I ++   + G  E    +  D++  G++PD       +     AG+++ A E 
Sbjct: 194 PDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEF 253

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L +   +G+S  II+++S++ A S A    KA E Y+ M    L P+ ST ++L+  L  
Sbjct: 254 LMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSI 313

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L +  E++  M   GL  N + +++LL    ++ DV     L  + +  G+ P++V 
Sbjct: 314 NGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVA 373

Query: 447 FKCIIGMCSRR 457
           F   I   S++
Sbjct: 374 FSAFIDGLSKQ 384


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/485 (23%), Positives = 212/485 (43%), Gaps = 54/485 (11%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            ++++N L++     G   + +DL   M+R  L+     Y+     +CK ++ + EA   
Sbjct: 128 NVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLV-EAKEL 186

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           FK +      P   TF+ L+     + D E  F +L  +++ GL+ D  +Y+ LI+    
Sbjct: 187 FKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCS 246

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALI------------------------------ 169
            G ++   E+F+EM+   + PNV TY  L+                              
Sbjct: 247 KGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVA 306

Query: 170 -----DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
                DG +K G+ + A     +M  +  +P+ V +NA+I    + G VD A  +L  M 
Sbjct: 307 YTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMA 366

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI---NCCSQ 281
            +     PD +T   L+K     G++D A ++  ++        P+V+   +     C Q
Sbjct: 367 KKGK--KPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQ 424

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
                 A  VY  M ++G   + V  + LID    AGK+  A E+ ++A + GIS    +
Sbjct: 425 R-RLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAAT 483

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           Y+ L+      +    A  L+   ++   +PTVS  N L+ +LC    + +   +  +M+
Sbjct: 484 YTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMR 543

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 461
           +    P+ ++++I++    +  DVE    LL +     ++P+ + F  +I     R+ K 
Sbjct: 544 NANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILIN----RFLKL 599

Query: 462 RTLNE 466
             L+E
Sbjct: 600 GQLDE 604



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 183/419 (43%), Gaps = 5/419 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK--LVPN--PTL 92
           + G + E   LLE+ME+ GL     VY A     C S+  I+     F   L  N  P +
Sbjct: 211 KNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFC-SKGDIERGKELFNEMLRKNVTPNV 269

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T++ LM+     +  + A Q+L  +    ++ D   YT L    +K+G+     +V   
Sbjct: 270 VTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDL 329

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV  G EPN  TY A+I+G  K G+V  A G    M  K  KPD V ++ L+      G 
Sbjct: 330 MVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGK 389

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A D+L  + ++   + PD      +++      ++  A+ VY  + +         Y
Sbjct: 390 IDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTY 449

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
            I I+     G    A  ++ D    G+ P+    + LI+       +  A  +  + + 
Sbjct: 450 NILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRA 509

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G    +  Y++LM +     + ++A  L++ M++    P V + N +I        +  
Sbjct: 510 SGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVES 569

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             E+L +M ++ L P+ IT+SIL+    +   ++    L  +    G +P+ V+F  ++
Sbjct: 570 AKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLL 628



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 144/325 (44%), Gaps = 3/325 (0%)

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            TLI    K+   D +  V  +M +  + P   +  ALI+      + + AFG  G++  
Sbjct: 63  NTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMK 122

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           +    +   FN L+    QSG   +A D+   M      + PD ++   ++       ++
Sbjct: 123 RGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNC--LIPDCVSYNTVINGLCKGKRL 180

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
             A+E++K +     K     ++  I+   + GD E    + ++M K G+  D    SAL
Sbjct: 181 VEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSAL 240

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I      G +E   E+  E   + ++  +++YS LM A    + W++A ++ + M   K+
Sbjct: 241 ISGFCSKGDIERGKELFNEMLRKNVTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKV 300

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           +P V     L   L    +    ++VL  M   G  PN +TY+ ++    ++  V+  L 
Sbjct: 301 RPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALG 360

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMC 454
           +L    + G  P++V +  ++ G+C
Sbjct: 361 ILETMAKKGKKPDVVTYSTLVKGLC 385



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 142/309 (45%), Gaps = 9/309 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++GR+ + + +LE M +KG       Y      +C   K I EA     L+ +   
Sbjct: 347 NGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGK-IDEAVDLLNLLMSKEF 405

Query: 90  ---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P +  FN+++      +    A +V   + E G  ++   Y  LI     +GK+   
Sbjct: 406 HIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKA 465

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E++ + V++GI PN  TY  LI+G  K   ++ A G +   R+   +P    +N L+ +
Sbjct: 466 LELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMAS 525

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +  +V++A ++  EM    H  DPD ++   ++     AG V+ A+E+   +   N+ 
Sbjct: 526 LCRESSVEQARNLFQEMRNANH--DPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLV 583

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                ++I IN   + G  + A S+Y+ M   G +PD V   +L+      GK E    +
Sbjct: 584 PDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSM 643

Query: 327 LQEAKNQGI 335
           LQ+  ++ +
Sbjct: 644 LQQMADKDV 652



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 36/212 (16%)

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
           ++   SV+  M    V P    LSALI+   +  K   AF +L     +G  + + +++ 
Sbjct: 75  YDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNL 134

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L+     + +  KA++L+  MK   L P   + N +I  LC G +L +  E+  +MK   
Sbjct: 135 LLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGE 194

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG------------------------- 439
             PN++T+S L+    +  DVE G  LL + ++ G                         
Sbjct: 195 CKPNSVTFSALIDGFCKNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGK 254

Query: 440 ----------VIPNLVMFKCII-GMCSRRYEK 460
                     V PN+V + C++  +C ++  K
Sbjct: 255 ELFNEMLRKNVTPNVVTYSCLMNALCKKQKWK 286



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 7/200 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G++++ ++L +D    G+      Y      +CK Q        F K 
Sbjct: 448 TYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKK 507

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             +   PT+S +N LM+        E A  + + ++ A    D   +  +I    K+G V
Sbjct: 508 RASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDV 567

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           ++  E+  EM+N  + P+  T+  LI+   K GQ+ +A   Y  M S    PD V+F++L
Sbjct: 568 ESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSL 627

Query: 204 ITACGQSGAVDRAFDVLAEM 223
           +      G  ++   +L +M
Sbjct: 628 LKGYSLKGKTEKVVSMLQQM 647


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 175/377 (46%), Gaps = 9/377 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N+L+     +   +GA ++L  +   G + D   YTT+I++ +K GKV+   E+
Sbjct: 182 PNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL 241

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
                +   +PNV  Y ALI+G  +  +V + F   G M  K + P+ + ++ +I++   
Sbjct: 242 -----SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSG 296

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V+ A  V A+M   V    P+  T  +LMK     G+V  A  ++  + +   +   
Sbjct: 297 IGNVELALAVWAKM--FVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNV 354

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I+     G    A SV   M + G  P+     ALID    AG +  A EI  +
Sbjct: 355 VAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNK 414

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G    ++ Y+S++     +  + +A  L E M +    P   T N  I  LC   +
Sbjct: 415 MMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGR 474

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +   + +   M+  G  PN  TY+ +L    +++ ++  L L+++ +E G+  NLV +  
Sbjct: 475 VECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNT 534

Query: 450 II-GMCS-RRYEKARTL 464
           I  G C+  ++E+A  L
Sbjct: 535 IFGGFCNVGKFEEALKL 551



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 206/447 (46%), Gaps = 13/447 (2%)

Query: 18  HANYAHDVSE-QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           ++N   D  E  +++YN L++      R+     LL +M  KG  + D V +    +   
Sbjct: 172 YSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGC-EPDVVSYTTVISSMS 230

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
               ++EA R   +   P +S +N L++  C   K  E  F +L  + E G+  +   Y+
Sbjct: 231 KLGKVEEA-RELSIRFQPNVSVYNALINGFCREYKVKE-VFLLLGQMVEKGIDPNVITYS 288

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           T+I++ +  G V+    V+ +M   G  PNV+T+ +L+ G    G+V +A   +  M  +
Sbjct: 289 TVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEE 348

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
             +P+ V +N LI      G +  A  V ++M  E +   P+  T GAL+   A AG + 
Sbjct: 349 GFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKM--ERNGCSPNVSTYGALIDGFAKAGDLV 406

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A E++  +          VYT  +N   ++  +  A S+ + M+     P+ V  +  I
Sbjct: 407 GASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFI 466

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                +G+VE A  +  + +  G S  I +Y+ ++         ++ALEL   M+   ++
Sbjct: 467 KGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGME 526

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
             + T N +    C+  +  + +++L  M   G+ P+ ITY+ L  A   +  V+  + L
Sbjct: 527 LNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQL 586

Query: 432 LSQAKEDG-VIPNLVMFKCII-GMCSR 456
           L +    G  +P +  +  ++ G+C++
Sbjct: 587 LDKLSAGGKWVPEVAAYTSLLWGICNQ 613



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 182/410 (44%), Gaps = 18/410 (4%)

Query: 72  KSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           +++  I  A  +F+ + N      T  T+ +++       D +G   +L+ ++  G+   
Sbjct: 54  RTETDIVLASNYFRSIANSKAFQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCS 113

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
             L+  +I T  + G  +   ++F+ +   G +P V  Y  L+D      +       Y 
Sbjct: 114 EDLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYS 173

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M+    +P+   +N L+ A  ++  VD A  +L EM+ +    +PD ++   ++ + + 
Sbjct: 174 NMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNK--GCEPDVVSYTTVISSMSK 231

Query: 247 AGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
            G+V+ ARE+       +I+  P   VY   IN   +    +    +   M +KG+ P+ 
Sbjct: 232 LGKVEEAREL-------SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNV 284

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           +  S +I      G VE A  +  +   +G S  + +++SLM          +AL ++  
Sbjct: 285 ITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNR 344

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M     +P V   N LI  LC   ++ + + V S M+  G  PN  TY  L+    +  D
Sbjct: 345 MAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGD 404

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFN 472
           +     + ++   +G IPN+V++  ++ +  R   + +A +L E + + N
Sbjct: 405 LVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDN 454



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 178/394 (45%), Gaps = 12/394 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN----VCKSQKAIKEAFRF 83
           YN LI    R+ ++ E   LL  M  KG+ D + + ++   +    +   + A+    + 
Sbjct: 252 YNALINGFCREYKVKEVFLLLGQMVEKGI-DPNVITYSTVISSLSGIGNVELALAVWAKM 310

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F    +P + TF  LM           A  +   + E G + +   Y TLI      GK+
Sbjct: 311 FVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKM 370

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                V  +M   G  PNV TYGALIDG AKAG +  A   +  M +    P+ VV+ ++
Sbjct: 371 GEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSM 430

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +    +S    +A+ ++ +M+ +  P  P+ +T    +K    +G+V+ A  ++  + +Y
Sbjct: 431 VNVLCRSSMFSQAWSLIEKMSTDNCP--PNTVTFNTFIKGLCCSGRVECAINLFCQMEQY 488

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                 + Y   ++   +    + A  +  +M +KG+  + V  + +     + GK E A
Sbjct: 489 GCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEA 548

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALIT 382
            ++L +    G+    I+Y++L  A       + A++L + + +  K  P V+   +L+ 
Sbjct: 549 LKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLW 608

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            +C+   + + +  L  M + G+C N  T++ L+
Sbjct: 609 GICNQIGVEEAVLYLDKMLNEGICLNAATWNALV 642



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 157/363 (43%), Gaps = 17/363 (4%)

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           +E A ++   ++E G +   K+Y  L+       +   +  ++  M   G EPNV+TY  
Sbjct: 130 AEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNI 189

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+    K  +V  A      M +K  +PD V +  +I++  + G V+ A ++        
Sbjct: 190 LLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRF---- 245

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGD 284
               P+     AL+       +V   +EV+ ++ +   KG  P V  Y+  I+  S  G+
Sbjct: 246 ---QPNVSVYNALINGFCREYKV---KEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGN 299

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            E A +V+  M  +G  P+    ++L+      G+V  A  I      +G    +++Y++
Sbjct: 300 VELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNT 359

Query: 345 LM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           L+ G CS+ K   +A+ +   M+     P VST  ALI        L    E+ + M + 
Sbjct: 360 LIHGLCSHGK-MGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTN 418

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM-CSRRYEKA 461
           G  PN + Y+ ++    R         L+ +   D   PN V F   I G+ CS R E A
Sbjct: 419 GCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECA 478

Query: 462 RTL 464
             L
Sbjct: 479 INL 481



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 110/261 (42%), Gaps = 31/261 (11%)

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   Y I I    +  D +    +   M  +G+   E     +I+     G  E A ++ 
Sbjct: 78  TQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMF 137

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
              +  G    +  Y+ L+ A  +   +Q    +Y +MK    +P V T N L+ ALC  
Sbjct: 138 YRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKN 197

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV--IPNLV 445
           +++    ++L +M + G  P+ ++Y+ ++ +  +   VE       +A+E  +   PN+ 
Sbjct: 198 NRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVE-------EARELSIRFQPNVS 250

Query: 446 MFKCIIGMCSRRYEKA-----------RTLNEHVLSFN------SGRPQIENKWTSLALM 488
           ++  +I    R Y+             + ++ +V++++      SG   +E     LAL 
Sbjct: 251 VYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVE-----LALA 305

Query: 489 VYREAIVAGTIPTVEVVSKVL 509
           V+ +  V G  P V   + ++
Sbjct: 306 VWAKMFVRGCSPNVYTFTSLM 326



 Score = 46.2 bits (108), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 10/158 (6%)

Query: 23  HDVSEQLHSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFF----NVCKSQ 74
           +  S  + +YN     L+++ RI E ++L+ +ME KG+ +++ V +   F    NV K +
Sbjct: 488 YGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGM-ELNLVTYNTIFGGFCNVGKFE 546

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTL 133
           +A+K   +       P   T+N L          + A Q+L  +   G    +   YT+L
Sbjct: 547 EALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSL 606

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171
           +        V+       +M+N GI  N  T+ AL+ G
Sbjct: 607 LWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRG 644


>gi|145356823|ref|XP_001422624.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582867|gb|ABP00941.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 744

 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 167/360 (46%), Gaps = 8/360 (2%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-A 156
           L  + A  +D+E A  V R+++++  K     YTT+I  C K+ + +   + +  M    
Sbjct: 49  LEDLIARVEDAEDAAAVERVLRQSVFKPGAPAYTTVIKACGKASQWEKALKAYEMMTKLH 108

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G +PN  T+ ALI+   KA Q  +AF  +  M  + ++P+   ++AL+ AC ++    RA
Sbjct: 109 GAKPNTITFSALINALGKAKQCDRAFQIFDEMNDRGIEPNIFTYSALLGACARAKQYQRA 168

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
            D+  ++      V+ D IT GA ++ C    + D+A E+++ +    IKG    Y   +
Sbjct: 169 MDIFQDLIENHRDVEVDRITYGAAIQCCVQGRRADKAIEIFERMLASGIKGNIITYNAVL 228

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
             C ++GD + A  +++ M+ + V  D     A+I     A ++    +       +G++
Sbjct: 229 MACEKSGDSDGAQEMFERMSAEQVPMDRATFHAMIGACDRARQLSKVMDYYHMMPERGVT 288

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTME 395
               + S+++ ACSNAK+   A+++Y   ++   +  T    N LI AL  G +     E
Sbjct: 289 PDAGTVSNVLMACSNAKDPLTAIKVYHDARAKFDVHRTPGMFNNLIGALHRGKRYDLVYE 348

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE------DGVIPNLVMFKC 449
            L          +  TY  L++ACER  + E    L  + K       D  +   V + C
Sbjct: 349 QLFHDSMTQSALSVSTYVHLMMACERFGNWEKSFQLFEEFKRHSPSSVDSYVWTRVFYAC 408



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 108/213 (50%), Gaps = 3/213 (1%)

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLSALIDFA 314
           V +++ +   K     YT  I  C +   WE A   Y+ MTK  G  P+ +  SALI+  
Sbjct: 65  VERVLRQSVFKPGAPAYTTVIKACGKASQWEKALKAYEMMTKLHGAKPNTITFSALINAL 124

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
           G A + + AF+I  E  ++GI   I +YS+L+GAC+ AK +Q+A+++++ +        V
Sbjct: 125 GKAKQCDRAFQIFDEMNDRGIEPNIFTYSALLGACARAKQYQRAMDIFQDLIENHRDVEV 184

Query: 375 S--TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T  A I     G +  K +E+   M + G+  N ITY+ +L+ACE+  D +    + 
Sbjct: 185 DRITYGAAIQCCVQGRRADKAIEIFERMLASGIKGNIITYNAVLMACEKSGDSDGAQEMF 244

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
            +   + V  +   F  +IG C R  + ++ ++
Sbjct: 245 ERMSAEQVPMDRATFHAMIGACDRARQLSKVMD 277



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/275 (20%), Positives = 114/275 (41%), Gaps = 25/275 (9%)

Query: 39  GRISEC---IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPNPT--- 91
           G+  +C     + ++M  +G+      Y A     C   K  + A   F+ L+ N     
Sbjct: 125 GKAKQCDRAFQIFDEMNDRGIEPNIFTYSA-LLGACARAKQYQRAMDIFQDLIENHRDVE 183

Query: 92  --LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
               T+   +  C   + ++ A ++   +  +G+K +   Y  ++  C KSG  D   E+
Sbjct: 184 VDRITYGAAIQCCVQGRRADKAIEIFERMLASGIKGNIITYNAVLMACEKSGDSDGAQEM 243

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M    +  +  T+ A+I  C +A Q++K    Y +M  + V PD    + ++ AC  
Sbjct: 244 FERMSAEQVPMDRATFHAMIGACDRARQLSKVMDYYHMMPERGVTPDAGTVSNVLMACSN 303

Query: 210 SG----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           +     A+    D  A+ +    P   +++ IGAL +         R   VY+ +   ++
Sbjct: 304 AKDPLTAIKVYHDARAKFDVHRTPGMFNNL-IGALHRG-------KRYDLVYEQLFHDSM 355

Query: 266 KGTP---EVYTIAINCCSQTGDWEFACSVYDDMTK 297
             +      Y   +  C + G+WE +  ++++  +
Sbjct: 356 TQSALSVSTYVHLMMACERFGNWEKSFQLFEEFKR 390


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 121/532 (22%), Positives = 240/532 (45%), Gaps = 36/532 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---------KAI 77
           +YN +I    + GR+++ + + E ME+ G    D  Y+   + +C  +          A+
Sbjct: 210 TYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAV 269

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           KE F        PT+ TF  L++    ++  + A ++   +  +  K D +++  LI + 
Sbjct: 270 KEGF-------TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSL 322

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K  ++    E+ +E+   G+ PNV TY ++IDG  K+G+V  A     +M     +P+ 
Sbjct: 323 IKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNA 382

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             +N+L+    +   + +A  +L +M  +   + P+ IT   L++   +    D A  ++
Sbjct: 383 WTYNSLMYGLVKDKKLHKAMALLTKMQKD--GIIPNVITYTTLLQGQCDEHDFDNAFRLF 440

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           +M+ +  +K     Y +  +   + G  E A   Y  + +KGV   +V+ + LID    A
Sbjct: 441 EMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKA 497

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G  + A  +++   ++G +    +YS L+ A    K   +AL + + M    +K T+   
Sbjct: 498 GNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAY 557

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LI  +    +      + ++M S G  P+  TY++ + +  ++  +E    L+ + + 
Sbjct: 558 TILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMER 617

Query: 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 497
           +GV P++V +  +I  C       R  +   L    G     N WT   L+   + ++ G
Sbjct: 618 EGVAPDVVTYNILIDGCGHMGYIDRAFS--TLKRMVGASCEPNYWTYCLLL---KHLLKG 672

Query: 498 TIPTVEVV--SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
            +  V  V  S +   ++L     + ER+V++ G++      S   SLI GF
Sbjct: 673 NLAYVRSVDTSGMWNLIELDITWQLLERMVKH-GLNPTVTTYS---SLIAGF 720



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 125/506 (24%), Positives = 201/506 (39%), Gaps = 63/506 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N LI++ R+ E  +LL ++   GL+     Y +     CKS K +  A    K++     
Sbjct: 320 NSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK-VDIALEVLKMMERDGC 378

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+N LM      K    A  +L  +Q+ G+  +   YTTL+         D  F 
Sbjct: 379 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 438

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  M   G++P+ H Y  L D   KAG+  +A   Y  +  K V   +V +  LI    
Sbjct: 439 LFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFS 495

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G  D A  ++  M  E     PD  T   L+ A     +++ A  +   +    IK T
Sbjct: 496 KAGNTDFAATLIERMIDE--GCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCT 553

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMT-------------------------------- 296
              YTI I+   + G  + A  +Y++MT                                
Sbjct: 554 IFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLIL 613

Query: 297 ---KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG------ 347
              ++GV PD V  + LID  GH G ++ AF  L+            +Y  L+       
Sbjct: 614 KMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGN 673

Query: 348 -----ACSNAKNWQK-----ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
                +   +  W         +L E M    L PTV+T ++LI   C   +L +   +L
Sbjct: 674 LAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLL 733

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMCSR 456
             M   GL PN   Y++L+  C      E  L  +S   E G  P L  ++  ++G+C+ 
Sbjct: 734 DHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNE 793

Query: 457 -RYEKARTLNEHVLSFNSGRPQIENK 481
             +EK ++L   +L       ++  K
Sbjct: 794 GDFEKVKSLFCDLLELGYNHDEVAWK 819



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 145/345 (42%), Gaps = 21/345 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+++L+      K    A  +L  +   G+K     YT LI    + GK D    
Sbjct: 516 TPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKR 575

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +++EM ++G +P+  TY   I+   K G++  A      M  + V PD V +N LI  CG
Sbjct: 576 MYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 635

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G +DRAF  L  M       +P++ T   L+K     G +   R V       +  G 
Sbjct: 636 HMGYIDRAFSTLKRMVGA--SCEPNYWTYCLLLKHLLK-GNLAYVRSV-------DTSGM 685

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             +  + I        W+    + + M K G+ P     S+LI     AG++E A  +L 
Sbjct: 686 WNLIELDIT-------WQ----LLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLD 734

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G+S     Y+ L+  C + K ++KAL     M     +P + +   L+  LC+  
Sbjct: 735 HMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEG 794

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
              K   +  D+  LG   + + + IL     +   V++   +LS
Sbjct: 795 DFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLS 839



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 149/328 (45%), Gaps = 4/328 (1%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           +LVQ+ GL  D   Y T+I +  K G +      F  ++  G+EP   T  AL+ G  + 
Sbjct: 58  QLVQD-GLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRT 116

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G++ KA   + +M     + +   +  LI     +  V +A  +   M  +     P+  
Sbjct: 117 GELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRD--GCSPNVR 174

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
               L+     +G+V  AR ++  + +  +  +   Y   I   S+ G    A  + + M
Sbjct: 175 AFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELM 234

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            K G  PD+   + LI +     K E A E+L  A  +G +  ++++++L+     A+ +
Sbjct: 235 EKNGCHPDDWTYNTLI-YGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKF 293

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             AL +   M S K K  +     LI +L   D+L +  E+L+++ + GL PN ITY+ +
Sbjct: 294 DDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSI 353

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPN 443
           +    +   V++ L +L   + DG  PN
Sbjct: 354 IDGYCKSGKVDIALEVLKMMERDGCQPN 381



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 164/370 (44%), Gaps = 12/370 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+N ++       D   A +  RL+ E GL+ +      L+    ++G++     +
Sbjct: 66  PDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWL 125

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M   G + N ++Y  LI G   A  V KA   + +M+     P+   F  LI+   +
Sbjct: 126 FLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCK 185

Query: 210 SGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           SG V  A   FD + +     + V P  +T  A++   +  G+++ A ++ +++ K    
Sbjct: 186 SGRVGDARLLFDAMPQ-----NGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCH 240

Query: 267 GTPEVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                Y T+    C Q    E A  + ++  K+G  P  V  + LI+    A K + A  
Sbjct: 241 PDDWTYNTLIYGLCDQKT--EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALR 298

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +  +  +    + +  +  L+ +       ++A EL   + +  L P V T  ++I   C
Sbjct: 299 MKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYC 358

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              ++   +EVL  M+  G  PN  TY+ L+    +   +   + LL++ ++DG+IPN++
Sbjct: 359 KSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVI 418

Query: 446 MFKCII-GMC 454
            +  ++ G C
Sbjct: 419 TYTTLLQGQC 428



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 155/358 (43%), Gaps = 12/358 (3%)

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           +A     C++ + +++A   F ++P         ++ +L+     +K    A  +  +++
Sbjct: 107 NALVLGYCRTGE-LRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMK 165

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
             G   + + +T LI+   KSG+V     +F  M   G+ P+V TY A+I G +K G++ 
Sbjct: 166 RDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMN 225

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM--NAEVHPVDPDHITI 237
            A     +M      PD   +N LI      G  D+  +   E+  NA      P  +T 
Sbjct: 226 DALKIKELMEKNGCHPDDWTYNTLI-----YGLCDQKTEEAEELLNNAVKEGFTPTVVTF 280

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+     A + D A  +   +     K   +V+   IN   +    + A  + ++++ 
Sbjct: 281 TNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISA 340

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G++P+ +  +++ID    +GKV+ A E+L+  +  G      +Y+SLM      K   K
Sbjct: 341 NGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHK 400

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           A+ L   M+   + P V T   L+   CD         +   M+  GL P+   Y++L
Sbjct: 401 AMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVL 458



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 128/321 (39%), Gaps = 23/321 (7%)

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +P+ Y  A+   ++    E+   VY  + + G++PD V  + +I      G +  A    
Sbjct: 32  SPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYF 91

Query: 328 QEAKNQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +     G+     + ++L +G C   +  +KA  L+  M  +  +    +   LI  LCD
Sbjct: 92  RLLLEGGLEPETFTCNALVLGYCRTGE-LRKACWLFLMMPLMGCQRNEYSYTILIQGLCD 150

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              + K + +   MK  G  PN   ++ L+    +   V    +L     ++GV+P+++ 
Sbjct: 151 AKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMT 210

Query: 447 FKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALM-------------VYR 491
           +  +I   S+  R   A  + E ++  N   P   + WT   L+             +  
Sbjct: 211 YNAMIVGYSKLGRMNDALKIKE-LMEKNGCHP---DDWTYNTLIYGLCDQKTEEAEELLN 266

Query: 492 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 551
            A+  G  PTV   + ++    +    D   R+   +  S   L       LI+   + D
Sbjct: 267 NAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKD 326

Query: 552 --PRAFSLLEEAASFGIVPCV 570
               A  LL E ++ G+VP V
Sbjct: 327 RLKEAKELLNEISANGLVPNV 347


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/448 (23%), Positives = 200/448 (44%), Gaps = 14/448 (3%)

Query: 30  HSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI   R+G +  E   +L++M+  G    DKV +    +V    +  KEA    +
Sbjct: 272 YTYNTLISCCRRGNLYEEAAGVLKEMKLAGF-SPDKVTYNALLDVYGKSRRSKEAMEVLQ 330

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P++ T+N L+S  A     E A ++   + E G+K D   YTTL++   K+G
Sbjct: 331 EMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAG 390

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K  A  ++F EM N G +PN+ T+ ALI      G+  +    +  +++    PD V +N
Sbjct: 391 KDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWN 450

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            L++  GQ+G       V  EM        P+  T   L+ + +  G  D+A  VYK + 
Sbjct: 451 TLLSVFGQNGMDSEVSGVFKEMKRA--GFVPERDTFNTLISSYSRCGSFDQAMAVYKRML 508

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +      Y   +   ++ G W+ +  V  +M      P+E+   +L+    +  ++E
Sbjct: 509 EAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIE 568

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
               + +E  +  I    +   +L+   S      +    +  ++     P ++T+NA++
Sbjct: 569 RMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMV 628

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           +       + K  E+L  MK  G  P+  TY+ L+    R  + E    +L +    G+ 
Sbjct: 629 SIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIR 688

Query: 442 PNLVMFKCII-GMC--SRRYEKARTLNE 466
           P+++ +  +I   C   R  + +R L+E
Sbjct: 689 PDIISYNTVIYAYCRNGRMRDASRVLSE 716



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 175/393 (44%), Gaps = 16/393 (4%)

Query: 75  KAIKEAFRFFKLVPNPTLSTF-------NMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           K    A R F+ V N   S          +++S+         A  +L  + + G   D 
Sbjct: 141 KKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDV 200

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYG 186
             YT++IT    +G+      VF +M   G +P + TY  +++   K G    K  G   
Sbjct: 201 YAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVD 260

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M+S  + PD   +N LI+ C +    + A  VL EM  ++    PD +T  AL+     
Sbjct: 261 RMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEM--KLAGFSPDKVTYNALLDV--- 315

Query: 247 AGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
            G+  R++E  +++ +    G P     Y   I+  ++ G  E A  + + M +KG+ PD
Sbjct: 316 YGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPD 375

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
               + L+     AGK +AA +I +E +N+G    I ++++L+    N   + + ++++E
Sbjct: 376 VFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFE 435

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            +K+ +  P + T N L++         +   V  +MK  G  P   T++ L+ +  R  
Sbjct: 436 DIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCG 495

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             +  + +  +  E GV P+L  +  ++   +R
Sbjct: 496 SFDQAMAVYKRMLEAGVNPDLSSYNAVLAALAR 528



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 180/401 (44%), Gaps = 21/401 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G + + ++L   M  KG+      Y        K+ K  K A + F+ 
Sbjct: 343 TYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKD-KAAVQIFEE 401

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + N    P + TFN L+ +  +        +V   ++      D   + TL++   ++G 
Sbjct: 402 MRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGM 461

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
              +  VF EM  AG  P   T+  LI   ++ G   +A   Y  M    V PD   +NA
Sbjct: 462 DSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNA 521

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR----AREVYK 258
           ++ A  + G   ++  VLAEM        P+ +T  +L+ A AN  +++R    A E+Y 
Sbjct: 522 VLAALARGGLWKQSEKVLAEMKD--GRCKPNELTYCSLLHAYANGKEIERMCALAEEIYS 579

Query: 259 MIHKYNIKGTPEVYTIAINC-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            I     +       + +N  C    + E A   + ++ ++G  PD   L+A++   G  
Sbjct: 580 GI--IEPRAVLLKTLVLVNSKCDLLMETERA---FLELRQRGFSPDITTLNAMVSIYGRR 634

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
             V  A EIL   K  G +  + +Y+SLM   S + N++++ E+   + +  ++P + + 
Sbjct: 635 QMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISY 694

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           N +I A C   ++     VLS+M+  G  P+ ITY+  + +
Sbjct: 695 NTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIAS 735



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 122/273 (44%), Gaps = 8/273 (2%)

Query: 191 KNVKPDRVVFNA-----LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           +N K   ++ N      +I+  G+ G V  A  +L  +  +   VD    T  +++ A  
Sbjct: 154 RNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDVYAYT--SMITAFT 211

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDE 304
           + G+   A  V+K + +   K T   Y + +N   + G  W     + D M   G+ PD 
Sbjct: 212 SNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDS 271

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
              + LI         E A  +L+E K  G S   ++Y++L+     ++  ++A+E+ + 
Sbjct: 272 YTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQE 331

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M+     P++ T N+LI+A      L   +E+ + M   G+ P+  TY+ LL   E+   
Sbjct: 332 MEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGK 391

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
            +  + +  + + +G  PN+  F  +I M   R
Sbjct: 392 DKAAVQIFEEMRNEGCKPNICTFNALIKMHGNR 424



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/348 (18%), Positives = 148/348 (42%), Gaps = 33/348 (9%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+N L+SV   +        V + ++ AG   +   + TLI++ ++ G  D    
Sbjct: 443 SPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMA 502

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V+  M+ AG+ P++ +Y A++   A+ G   ++      M+    KP+ + + +L+ A  
Sbjct: 503 VYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYA 562

Query: 209 QSGAVDR----------------------------AFDVLAE-----MNAEVHPVDPDHI 235
               ++R                              D+L E     +        PD  
Sbjct: 563 NGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDIT 622

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T+ A++        V +A E+   + +     +   Y   +   S++ ++E +  +  ++
Sbjct: 623 TLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREI 682

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             KG+ PD +  + +I      G++  A  +L E +  G +  II+Y++ + + +    +
Sbjct: 683 LAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYAADSMF 742

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            +A+++  +M     KP  ST N+++   C  ++  +    +++++ L
Sbjct: 743 VEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNLRKL 790


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 183/432 (42%), Gaps = 43/432 (9%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P++  F  L S     K  +    + + ++ AG+  D    T LI    +   VD  F
Sbjct: 87  PLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTILINCFCRLCHVDYGF 146

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            V  +++  G+EPNV T+  LI+G    G++ +A   + +M ++  KP+   ++ +I   
Sbjct: 147 SVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGL 206

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G       +L  M  +V   +PD +    ++        V+ A  ++  +    I  
Sbjct: 207 CRVGKTTEVIKLLEHM--KVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILP 264

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   YT  I+     G W+ A  + ++M    ++PD V  S LID     G+V  A  IL
Sbjct: 265 TVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVIL 324

Query: 328 QEAKNQGISVGIISYSSLM-GAC----------------------------------SNA 352
           +     G+   + +Y++LM G C                                    A
Sbjct: 325 KTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKA 384

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           K   +A +L++ M    L P   + N LI+ LC   +  +  E+  DM S G  PN +TY
Sbjct: 385 KRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTY 444

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLS 470
           SILL    ++  ++  + L    +  G+ P+LV +  +I GMC   +++ AR L    LS
Sbjct: 445 SILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAE-LS 503

Query: 471 FNSGRPQIENKW 482
               +P   N W
Sbjct: 504 VKGLQP---NNW 512



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 143/322 (44%), Gaps = 11/322 (3%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A      +HSY+ +I    R G+ +E I LLE M+  G      +Y+     +CK  + +
Sbjct: 189 ARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCK-DRLV 247

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EA   F  +      PT+ T+  L+    +    + AF +L  ++   +  D   ++ L
Sbjct: 248 NEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVL 307

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    K G+V     +   M   G+EP+V TY  L++G     +V +A   + +M SK  
Sbjct: 308 IDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGR 367

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            PD   F+ L+    ++  +D A  +  EM      + PD ++   L+     A +   A
Sbjct: 368 MPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHR--GLIPDTVSYNTLISGLCQARRPLEA 425

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E++K +H          Y+I ++C S+ G  + A  ++  M   G+ PD V  + +ID 
Sbjct: 426 EELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDG 485

Query: 314 AGHAGKVEAAFEILQEAKNQGI 335
               GK + A E+  E   +G+
Sbjct: 486 MCKYGKFKDARELFAELSVKGL 507



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 155/352 (44%), Gaps = 47/352 (13%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + ++++++  +C   K +E   ++L  ++  G + D  +Y T++    K   V+    
Sbjct: 194 PNVHSYSIIIKGLCRVGKTTE-VIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVH 252

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F +M   GI P V TY +LI G    G+  +AFG    M+  N+ PD V F+ LI    
Sbjct: 253 IFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMC 312

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKG 267
           + G V  A  +L  M      V+PD  T   LM       +V  AR+V++ MI K  +  
Sbjct: 313 KEGEVSEARVILKTMTE--MGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRM-- 368

Query: 268 TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPD---------------------E 304
            P+V++  I +N   +    + A  ++D+MT +G+IPD                     E
Sbjct: 369 -PDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEE 427

Query: 305 VF--------------LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GAC 349
           +F               S L+D     G ++ A  + +  +N G+   +++Y+ ++ G C
Sbjct: 428 LFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMC 487

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
              K ++ A EL+  +    L+P        I  +C G  L +  +    M+
Sbjct: 488 KYGK-FKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQME 538



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/446 (22%), Positives = 180/446 (40%), Gaps = 28/446 (6%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           ++     F+ MVN    P++  +G L     +             M    +  D +    
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    +   VD  F VL ++      ++P+ IT   L+      G++ RA E++ ++  
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKL--GLEPNVITFSTLINGFCIEGKIGRAIELFDVMVA 189

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              K     Y+I I    + G       + + M   G  PD V  + ++D       V  
Sbjct: 190 RGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNE 249

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  I  + K  GI   +++Y+SL+    N   W++A  L   MK   + P +   + LI 
Sbjct: 250 AVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLID 309

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVI 441
            +C   ++ +   +L  M  +G+ P+  TY+ L+   C R + VE    +       G +
Sbjct: 310 IMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVE-ARKVFEVMISKGRM 368

Query: 442 PNLVMFKCII-GMC-SRRYEKARTLNEHV---------LSFN---SGRPQIENKWTSLAL 487
           P++  F  ++ G C ++R ++A+ L + +         +S+N   SG  Q      +  L
Sbjct: 369 PDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEEL 428

Query: 488 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE---RLVENLGVSADALKRSNLCSLI 544
             +++    G  P +   S +L CL      D      R +EN G+  D +  +    +I
Sbjct: 429 --FKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYN---IMI 483

Query: 545 DGFGEYD--PRAFSLLEEAASFGIVP 568
           DG  +Y     A  L  E +  G+ P
Sbjct: 484 DGMCKYGKFKDARELFAELSVKGLQP 509



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 144/302 (47%), Gaps = 9/302 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           +RL +   ++E + +   M+  G+L     Y +    + ++    KEAF     +     
Sbjct: 239 DRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGL-RNLGRWKEAFGLLNEMKGGNI 297

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMF 147
            P L  F++L+ +     +   A  +L+ + E G++ D   Y TL+   C +   V+A  
Sbjct: 298 MPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEAR- 356

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           +VF  M++ G  P+V ++  L++G  KA ++ +A   +  M  + + PD V +N LI+  
Sbjct: 357 KVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGL 416

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            Q+     A ++  +M++  +P  P+ +T   L+   +  G +D+A  +++ +    +K 
Sbjct: 417 CQARRPLEAEELFKDMHSNGYP--PNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKP 474

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y I I+   + G ++ A  ++ +++ KG+ P+    +  ID     G ++ A +  
Sbjct: 475 DLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAF 534

Query: 328 QE 329
           ++
Sbjct: 535 RQ 536



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 110/230 (47%), Gaps = 7/230 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           ++G +SE   +L+ M   G+      Y+      C   + + EA + F+++ +    P +
Sbjct: 313 KEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVV-EARKVFEVMISKGRMPDV 371

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            +F++L++    +K  + A Q+   +   GL  D   Y TLI+   ++ +     E+F +
Sbjct: 372 FSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKD 431

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M + G  PN+ TY  L+D  +K G + +A G +  M +  +KPD V +N +I    + G 
Sbjct: 432 MHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGK 491

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
              A ++ AE++  V  + P++      +      G +D A + ++ + K
Sbjct: 492 FKDARELFAELS--VKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEK 539



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 116/270 (42%), Gaps = 7/270 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           GR  E   LL +M+   ++  D V  +   ++   +  + EA    K +      P ++T
Sbjct: 280 GRWKEAFGLLNEMKGGNIMP-DLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVAT 338

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N LM+      +   A +V  ++   G   D   ++ L+    K+ ++D   ++F EM 
Sbjct: 339 YNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMT 398

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           + G+ P+  +Y  LI G  +A +  +A   +  M S    P+ V ++ L+    + G +D
Sbjct: 399 HRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLD 458

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           +A  +   M  E   + PD +T   ++      G+   ARE++  +    ++    V T 
Sbjct: 459 QAMGLFRAM--ENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQPNNWVCTP 516

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
            I+   + G  + A   +  M K    P +
Sbjct: 517 TIDGVCKGGLLDEAHKAFRQMEKDDCSPAQ 546



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   +  RI E   L ++M  +GL+     Y+     +C++++ + EA   FK + +   
Sbjct: 379 NGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPL-EAEELFKDMHSNGY 437

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+++L+   +     + A  + R ++ +GLK D   Y  +I    K GK     E
Sbjct: 438 PPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARE 497

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
           +F E+   G++PN       IDG  K G + +A  A+  M   +  P +   N   T
Sbjct: 498 LFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGCINGRAT 554



 Score = 39.3 bits (90), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 112/261 (42%), Gaps = 26/261 (9%)

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           +N   AL  + HM +    P++     L +AL         + +   M+  G+  + ++ 
Sbjct: 70  RNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSL 129

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLS 470
           +IL+    R   V+ G  +L +  + G+ PN++ F  +I G C   +  +A  L + V+ 
Sbjct: 130 TILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFD-VMV 188

Query: 471 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVS--KVLGCLQ--LPYNADI----RE 522
               +P +     S ++++     V  T   ++++   KV+GC    + YN  +    ++
Sbjct: 189 ARGYKPNVH----SYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKD 244

Query: 523 RLV----------ENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSF 572
           RLV          +  G+    +  ++L   +   G +   AF LL E     I+P +  
Sbjct: 245 RLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWK-EAFGLLNEMKGGNIMPDLVA 303

Query: 573 KEIPVVVDARKLEIHTAKVSL 593
             + + +  ++ E+  A+V L
Sbjct: 304 FSVLIDIMCKEGEVSEARVIL 324


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 189/441 (42%), Gaps = 21/441 (4%)

Query: 77  IKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           ++E  RF + + N    P +     L+        ++ A Q++ +++E+G   D   Y  
Sbjct: 95  LEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNV 154

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           LI+   KSG+++    V   M   G+ PN  TY A++      G++ +A    G      
Sbjct: 155 LISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSK 211

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
             PD V    LI A  +   V +A  +  EM  +     PD +T   L+K     G++D 
Sbjct: 212 CYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNK--GCKPDVVTYNVLIKGFCKGGRLDE 269

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A    K +  Y  +     + + +      G W  A  +   M +KG +P  V  + LI+
Sbjct: 270 AIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILIN 329

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
           F    G +  A  +L+     G +    S++ L+    N K   +A+E  E M S    P
Sbjct: 330 FLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYP 389

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            + T N L+TALC   ++   + +LS + S G  P+ I+Y+ ++    +    E+ + LL
Sbjct: 390 DIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELL 449

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRR-----------YEKARTLNEHVLSFNSGRPQI-EN 480
            +    G+ P+L+    ++G  SR            Y K   +  +   +NS    + ++
Sbjct: 450 EEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKS 509

Query: 481 KWTSLALMVYREAIVAGTIPT 501
           + TSLA+    + +  G  PT
Sbjct: 510 QQTSLAIDFLADMVAKGCKPT 530



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 190/424 (44%), Gaps = 47/424 (11%)

Query: 35  LIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN 89
           LIR+    GR      ++  +E  G +     Y+      CKS + I+EA R   ++  +
Sbjct: 120 LIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGE-IEEALRVLDRMGVS 178

Query: 90  PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-TTCAKSGKVDAMF 147
           P  +T++ +L S+C   K  + A QVL    ++    D    T LI  TC +SG   AM 
Sbjct: 179 PNAATYDAVLCSLCDRGKLKQ-AMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAM- 236

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA------FGAYG----------IMRS- 190
           ++F+EM N G +P+V TY  LI G  K G++ +A        +YG          I+RS 
Sbjct: 237 KLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSL 296

Query: 191 ------------------KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
                             K   P  V FN LI    Q G + +A +VL  M    H   P
Sbjct: 297 CSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHT--P 354

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           +  +   L++   N   +DRA E  +++           Y I +    + G  + A  + 
Sbjct: 355 NSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVIL 414

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
             ++ KG  P  +  + +ID     GK E A E+L+E   +G+   +I+ +S++G  S  
Sbjct: 415 SQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSRE 474

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
              ++A++ + ++K   ++P     N++IT LC   Q    ++ L+DM + G  P   TY
Sbjct: 475 GKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATY 534

Query: 413 SILL 416
           + L+
Sbjct: 535 TTLI 538



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 149/351 (42%), Gaps = 46/351 (13%)

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           ++G+++        M N G  P+V    ALI    K G+   A    GI+       D  
Sbjct: 91  RNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVT 150

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +N LI+   +SG ++ A  VL  M      V P+  T  A++ +  + G++ +A +V  
Sbjct: 151 SYNVLISGYCKSGEIEEALRVLDRMG-----VSPNAATYDAVLCSLCDRGKLKQAMQV-- 203

Query: 259 MIHKYNIKGTPEVYTIAI---NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +  +   K  P+V T  +     C ++G  + A  ++++M  KG  PD V  + LI    
Sbjct: 204 LGRQLQSKCYPDVVTCTVLIDATCKESGVGQ-AMKLFNEMRNKGCKPDVVTYNVLIKGFC 262

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ------------------- 356
             G+++ A   L++  + G    +IS++ ++ +  +   W                    
Sbjct: 263 KGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVV 322

Query: 357 ----------------KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
                           KAL + E M      P   + N LI   C+G  + + +E L  M
Sbjct: 323 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIM 382

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            S G  P+ +TY+ILL A  +   V+  +++LSQ    G  P+L+ +  +I
Sbjct: 383 VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVI 433


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1114

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 186/414 (44%), Gaps = 6/414 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVPN-PT 91
           L R G+I+E  ++L+ M+ +G       Y      +C ++K    KE F   K   + P 
Sbjct: 270 LGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPD 329

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+  L+   + ++D +   Q    +++ G   D   +T L+    K+G     F    
Sbjct: 330 RVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLD 389

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M + GI PN+HTY  LI G  +  ++  A   +  M S  VKP    +   I   G+SG
Sbjct: 390 VMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSG 449

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
               A +   +M  +   + P+ +   A + + A AG+   A++++  +    +      
Sbjct: 450 DSVSALETFEKMKTK--GIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVT 507

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + + C S+ G+ + A  +  +M +    PD + +++LI+    A +V+ A+++    K
Sbjct: 508 YNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMK 567

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
              +   +++Y++L+         Q+A+EL+E M      P   T N L   LC  D++ 
Sbjct: 568 EMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVT 627

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             +++L  M  +G  P+  TY+ ++    +   V+  +    Q K+  V P+ V
Sbjct: 628 LALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK-LVYPDFV 680



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 184/448 (41%), Gaps = 79/448 (17%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           ++ I + FR       P+L T++ LM      +D E    +L+ ++  GLK +   +T  
Sbjct: 214 RRMILDGFR-------PSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTIC 266

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    ++GK++  +E+   M + G  P+V TY  LID    A ++  A   +  M++   
Sbjct: 267 IRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRH 326

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG----- 248
           KPDRV +  L+     +  +D      +EM  + H   PD +T   L+ A   AG     
Sbjct: 327 KPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHV--PDVVTFTILVDALCKAGNFGEA 384

Query: 249 ------------------------------QVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
                                         ++D A E++  +    +K T   Y + I+ 
Sbjct: 385 FAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDY 444

Query: 279 CSQTGDWEFACSVYDDMTKKGV-----------------------------------IPD 303
             ++GD   A   ++ M  KG+                                   +PD
Sbjct: 445 YGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 504

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V  + ++      G+++ A ++L E         +I  +SL+     A    +A +++ 
Sbjct: 505 SVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFM 564

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            MK +KLKPTV T N L+  L    ++ + +E+   M   G  PNTIT++ L     + D
Sbjct: 565 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKND 624

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +V + L +L +  + G +P++  +  II
Sbjct: 625 EVTLALKMLFKMMDMGCVPDVFTYNTII 652



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 153/302 (50%), Gaps = 2/302 (0%)

Query: 116  RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
            +  ++ G++     Y  LI    ++  ++   +VF ++ N G  P+V TY  L+D   K+
Sbjct: 776  KFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKS 835

Query: 176  GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            G++ + F  Y  M +   +P+ +  N +I+   ++G VD A D+  ++ ++     P   
Sbjct: 836  GKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSD-RDFSPTAC 894

Query: 236  TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
            T G L+   + +G++  A+++++ +  Y  +    +Y I IN   + G+ + AC+++  M
Sbjct: 895  TYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRM 954

Query: 296  TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             K+GV PD    S L+D     G+V+      +E K  G++  ++ Y+ ++         
Sbjct: 955  VKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRL 1014

Query: 356  QKALELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++AL L+  M KS  + P + T N+LI  L     + +  ++ ++++  GL PN  T++ 
Sbjct: 1015 EEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNA 1074

Query: 415  LL 416
            L+
Sbjct: 1075 LI 1076



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 155/354 (43%), Gaps = 6/354 (1%)

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
           LR ++E G   +   Y  LI    KS       EV+  M+  G  P++ TY +L+ G  K
Sbjct: 178 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGK 237

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
              +    G    M +  +KP+   F   I   G++G ++ A+++L  M+ E     PD 
Sbjct: 238 RRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDE--GCGPDV 295

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T   L+ A   A ++D A+EV+  +     K     Y   ++  S   D +     + +
Sbjct: 296 VTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSE 355

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K G +PD V  + L+D    AG    AF  L   ++QGI   + +Y++L+        
Sbjct: 356 MEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHR 415

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
              ALE++++M+S+ +KPT  T    I            +E    MK+ G+ PN +  + 
Sbjct: 416 LDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNA 475

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
            L +  +         +    K+ G++P+ V +     M  + Y K   ++E +
Sbjct: 476 SLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYN----MMMKCYSKVGEIDEAI 525



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 150/328 (45%), Gaps = 4/328 (1%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P L T+N+L+     +   E A  V   V+  G   D   Y  L+    KSGK+D +FE+
Sbjct: 785  PKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEI 844

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALITACG 208
            + EM     EPN  T+  +I G  KAG V  A   Y  +M  ++  P    +  LI    
Sbjct: 845  YKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS 904

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +SG +  A  +   M+   +   P+      L+     AG+ D A  ++K + K  ++  
Sbjct: 905  KSGRLYEAKQLFEGMSD--YGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPD 962

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             + Y++ ++C    G  +     + ++ + G+ PD V  + +I+  G   ++E A  +  
Sbjct: 963  LKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFN 1022

Query: 329  E-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E  K++GI+  + +Y+SL+     A   ++A ++Y  ++   L+P V T NALI      
Sbjct: 1023 EMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLS 1082

Query: 388  DQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             +      V   M + G  PNT TY  L
Sbjct: 1083 GKPEHAYAVYQTMVTGGFSPNTGTYEQL 1110



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/440 (20%), Positives = 200/440 (45%), Gaps = 11/440 (2%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           ++N  H      +    L   G+I E +  + D+ +K ++  D   +   F     +  +
Sbjct: 113 NSNLVHTTETCNYMLEALRVDGKIEE-MAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGL 171

Query: 78  KEA------FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           ++A       R F  V N    ++N L+ +   S+    A +V R +   G +   + Y+
Sbjct: 172 RQAPFALRKMREFGFVLNAY--SYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYS 229

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           +L+    K   ++++  +  EM   G++PNV+T+   I    +AG++ +A+     M  +
Sbjct: 230 SLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDE 289

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
              PD V +  LI A   +  +D A +V A+M    H   PD +T   L+   ++   +D
Sbjct: 290 GCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHK--PDRVTYITLLDRFSDNRDLD 347

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
              + +  + K         +TI ++   + G++  A +  D M  +G++P+    + LI
Sbjct: 348 SVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLI 407

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                  +++ A EI    ++ G+     +Y   +     + +   ALE +E MK+  + 
Sbjct: 408 CGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIA 467

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P +   NA + +L    +  +  ++   +K +GL P+++TY++++    +  +++  + L
Sbjct: 468 PNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKL 527

Query: 432 LSQAKEDGVIPNLVMFKCII 451
           LS+  E+   P++++   +I
Sbjct: 528 LSEMVENCCEPDVIVVNSLI 547



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 114/473 (24%), Positives = 201/473 (42%), Gaps = 56/473 (11%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            LH+YN LI    R  R+ + +++ ++ME  G+      Y        KS  ++     F
Sbjct: 399 NLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETF 458

Query: 84  FKLVPN---PTLSTFNM-LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            K+      P +   N  L S+  + +D E A Q+   +++ GL  D   Y  ++   +K
Sbjct: 459 EKMKTKGIAPNIVACNASLYSLAKAGRDRE-AKQIFYGLKDIGLVPDSVTYNMMMKCYSK 517

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G++D   ++  EMV    EP+V    +LI+   KA +V +A+  +  M+   +KP  V 
Sbjct: 518 VGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVT 577

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVYK 258
           +N L+   G++G +  A ++   M  +  P  P+ IT   L        +V  A + ++K
Sbjct: 578 YNTLLAGLGKNGKIQEAIELFEGMVQKGCP--PNTITFNTLFDCLCKNDEVTLALKMLFK 635

Query: 259 MIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           M+   ++   P+V+T    I    + G  + A   +  M KK V PD V L  L+     
Sbjct: 636 MM---DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM-KKLVYPDFVTLCTLLPGVVK 691

Query: 317 AGKVEAAFEI----LQEAKNQGISV-------------GI---ISYSSLM---GACSNA- 352
           AG +E A++I    L    +Q  ++             GI   +S+S  +   G C +  
Sbjct: 692 AGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAVSFSERLVANGICRDGD 751

Query: 353 -------------KNWQKALELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
                         N   A  L+E   K + ++P + T N LI  L + D +    +V  
Sbjct: 752 SILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFL 811

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +K+ G  P+  TY+ LL A  +   ++    +  +       PN +    +I
Sbjct: 812 QVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVI 864



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 163/376 (43%), Gaps = 67/376 (17%)

Query: 146  MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            +FE F +  + G++P + TY  LI G  +A  +  A   +  +++    PD   +N L+ 
Sbjct: 773  LFEKFTK--DLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLD 830

Query: 206  ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYN 264
            A G+SG +D  F++  EM+A  H  +P+ IT   ++     AG VD A ++Y  ++   +
Sbjct: 831  AYGKSGKIDELFEIYKEMSA--HECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSDRD 888

Query: 265  IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
               T   Y   I+  S++G    A  +++ M+  G  P+    + LI+  G AG+ +AA 
Sbjct: 889  FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAAC 948

Query: 325  EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
             + +    +G+                                   +P + T + L+  L
Sbjct: 949  ALFKRMVKEGV-----------------------------------RPDLKTYSVLVDCL 973

Query: 385  CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPN 443
            C   ++ + +    ++K  GL P+ + Y++++    +   +E  L+L ++ K+  G+ P+
Sbjct: 974  CMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPD 1033

Query: 444  LVMFKCII---GMCSRRYEKARTLNE--------HVLSFN--------SGRPQIENKWTS 484
            L  +  +I   G+     E  +  NE        +V +FN        SG+P+       
Sbjct: 1034 LYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPE------- 1086

Query: 485  LALMVYREAIVAGTIP 500
             A  VY+  +  G  P
Sbjct: 1087 HAYAVYQTMVTGGFSP 1102



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 175/425 (41%), Gaps = 39/425 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L + GR  E   +   ++  GL+  D V +            I EA +   ++V N   P
Sbjct: 480 LAKAGRDREAKQIFYGLKDIGLVP-DSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEP 538

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            +   N L++    +   + A+++   ++E  LK     Y TL+    K+GK+    E+F
Sbjct: 539 DVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELF 598

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             MV  G  PN  T+  L D   K  +V  A      M      PD   +N +I    ++
Sbjct: 599 EGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKN 658

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G V  A     +M   V+   PD +T+  L+     AG ++ A   YK+I  +       
Sbjct: 659 GQVKEAMCFFHQMKKLVY---PDFVTLCTLLPGVVKAGLIEDA---YKIIANF------- 705

Query: 271 VYTIAINCCSQTGD--WE-------------FACSVYDDMTKKGVIPD-EVFLSALIDFA 314
           +Y+    C  Q  +  WE              A S  + +   G+  D +  L  +I ++
Sbjct: 706 LYS----CADQPANLFWEDLMGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYS 761

Query: 315 GHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
                   A  + ++  K+ G+   + +Y+ L+G    A   + A +++  +K+    P 
Sbjct: 762 FKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPD 821

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           V+T N L+ A     ++ +  E+  +M +    PNTIT++I++    +  +V+  L L  
Sbjct: 822 VATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYY 881

Query: 434 QAKED 438
               D
Sbjct: 882 DLMSD 886



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 5/217 (2%)

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            +PT  T+  L+   + S     A Q+   + + G + +C +Y  LI    K+G+ DA   
Sbjct: 890  SPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACA 949

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            +F  MV  G+ P++ TY  L+D     G+V +    +  ++   + PD V +N +I   G
Sbjct: 950  LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLG 1009

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +   ++ A  +  EM      + PD  T  +L+     AG V+ A ++Y  I +  ++  
Sbjct: 1010 KFHRLEEALVLFNEMKKS-RGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLE-- 1066

Query: 269  PEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPD 303
            P V+T    I   S +G  E A +VY  M   G  P+
Sbjct: 1067 PNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1103



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 90/196 (45%), Gaps = 3/196 (1%)

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEA 322
           N+  T E     +      G  E    V+D M K+ +  D   +L+     +   G  +A
Sbjct: 115 NLVHTTETCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQA 174

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
            F  L++ +  G  +   SY+ L+     ++   +A+E+Y  M     +P++ T ++L+ 
Sbjct: 175 PFA-LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMV 233

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            L     +   M +L +M++LGL PN  T++I +    R   +     +L +  ++G  P
Sbjct: 234 GLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGP 293

Query: 443 NLVMFKCII-GMCSRR 457
           ++V +  +I  +C+ R
Sbjct: 294 DVVTYTVLIDALCTAR 309



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 16/246 (6%)

Query: 180 KAFGAYGIMRSKNVKPD-------RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
           K+ G  G M  K+ KPD       RV+ +   T    S      F  +A  +  VH  + 
Sbjct: 68  KSSGFSGSMIRKSSKPDLSSSEVARVLMSFPDTDSSFS-----YFKSVAGNSNLVHTTE- 121

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
              T   +++A    G+++    V+ ++ K  IK     Y     C S  G    A    
Sbjct: 122 ---TCNYMLEALRVDGKIEEMAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGLRQAPFAL 178

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
             M + G + +    + LI     +     A E+ +     G    + +YSSLM      
Sbjct: 179 RKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYSSLMVGLGKR 238

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           ++ +  + L + M+++ LKP V T    I  L    ++ +  E+L  M   G  P+ +TY
Sbjct: 239 RDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTY 298

Query: 413 SILLVA 418
           ++L+ A
Sbjct: 299 TVLIDA 304



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 10/181 (5%)

Query: 32   YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
            YN LI    + G       L + M ++G+    K Y      +C   + + E   +F+ +
Sbjct: 931  YNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGR-VDEGLHYFREL 989

Query: 88   P----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGK 142
                 NP +  +N++++        E A  +   ++++ G+  D   Y +LI     +G 
Sbjct: 990  KESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGM 1049

Query: 143  VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            V+   ++++E+  AG+EPNV T+ ALI G + +G+   A+  Y  M +    P+   +  
Sbjct: 1050 VEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQ 1109

Query: 203  L 203
            L
Sbjct: 1110 L 1110


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 128/532 (24%), Positives = 227/532 (42%), Gaps = 86/532 (16%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           +QF    G+   Y HDV    HSYN L+         D+L  ++        KVY     
Sbjct: 11  IQFFDWAGEQDGYKHDV----HSYNHLL---------DIL--VKSGHQFRTGKVYKDLLH 55

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           + C                 +P L TF +L+     +  +  A + LR + E  +  D  
Sbjct: 56  SGC-----------------SPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVY 98

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA--FGAYG 186
           ++  LI    K G  D   ++F  M ++ + P++ TY  +I G  K+G + KA       
Sbjct: 99  IFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEM 158

Query: 187 IMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLAEM------------NAEVHPV-- 230
           I R     PD V +N LI A  C + G V+ A ++L  M            N+ +H +  
Sbjct: 159 IRRGGKSAPDIVTYNTLINAGIC-KDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCV 217

Query: 231 ----------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
                            PD +T   L+     AG + RA EV + + + NI      YTI
Sbjct: 218 AGRVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTI 277

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            +N   + G  + A  + +++ ++G IPD +  ++L+D    +G++E A ++++E   + 
Sbjct: 278 LVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSARE 337

Query: 335 ISVGIIS---------YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           I   ++S         Y+ ++G      +  KA+ L   + +    P V T N LI  LC
Sbjct: 338 ILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLC 397

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             +++ +  ++  +M SLG  PN +T   ++    R   V+    L+ +       PN+V
Sbjct: 398 KANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVV 457

Query: 446 MFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 496
           ++  +I G+C     K+  +++  +  ++ R Q      +L    YR+ IV+
Sbjct: 458 VYTSLIDGLC-----KSDRMDDACVVLDAMRGQ----GVALDDFAYRKLIVS 500



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/439 (22%), Positives = 185/439 (42%), Gaps = 26/439 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  ++ +N LI    + G   + + L E+ME   +      Y+     +CKS    K  
Sbjct: 93  VAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKAR 152

Query: 81  FRFFKLVPN-----PTLSTFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
               +++       P + T+N L++  +C    D E A ++L  ++ AG   D   Y ++
Sbjct: 153 ELLEEMIRRGGKSAPDIVTYNTLINAGICKDG-DVEEALEILDGMKLAGPAPDVITYNSI 211

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I     +G+V    E+   M      P++ T+  L+DG  KAG + +A      M  +N+
Sbjct: 212 IHALCVAGRVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENI 268

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            PD + +  L+    + G V  AF +L E+  + +   PD I   +L+     +G+++ A
Sbjct: 269 LPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYI--PDVIAYTSLVDGLCKSGEIEEA 326

Query: 254 REVYK-------MIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
            ++ K       +    +I   P ++T  I +    + G    A S+  D+  +G +PD 
Sbjct: 327 HKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDV 386

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V  + LID    A +V  A ++  E  + G     ++  S++           A  L   
Sbjct: 387 VTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVE 446

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M   +  P V    +LI  LC  D++     VL  M+  G+  +   Y  L+V+      
Sbjct: 447 MSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGR 506

Query: 425 VEVGLMLLSQAKEDGVIPN 443
           V   + +  +    G +P+
Sbjct: 507 VAEAMAMYDEMVARGFLPD 525



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 166/365 (45%), Gaps = 18/365 (4%)

Query: 31  SYNRLI-----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +YN LI     + G + E +++L+ M+  G       Y++    +C + + ++ A     
Sbjct: 171 TYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKT 230

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           +  +P L TFN L+     +     A +VL  +    +  D   YT L+    + G+V  
Sbjct: 231 MSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQV 290

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA------FGAYGI---MRSKNVKPD 196
            F +  E+V  G  P+V  Y +L+DG  K+G++ +A        A  I   M S N+ P 
Sbjct: 291 AFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPP 350

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
              +N ++    + G++ +A  +++++ A  +   PD +T   L+     A +V  A ++
Sbjct: 351 LFTYNIVLGGLIKDGSISKAVSLISDLVARGYV--PDVVTYNTLIDGLCKANRVREACDL 408

Query: 257 Y-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
             +M           + ++    C + G  + A S+  +M++K   P+ V  ++LID   
Sbjct: 409 ADEMASLGCFPNDVTLGSVVFGLC-RVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLC 467

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            + +++ A  +L   + QG+++   +Y  L+ +  +     +A+ +Y+ M +    P  S
Sbjct: 468 KSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGS 527

Query: 376 TMNAL 380
           T   L
Sbjct: 528 TSKTL 532


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 155/324 (47%), Gaps = 3/324 (0%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           +I    +S  ++   + F  MV  G  P+  ++   +D  AK+G + + +G +     + 
Sbjct: 44  VINASLQSQLLEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWGFFTEYLGR- 102

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
            + D   F   I A  ++G V + F++LA+M  E   V P+      L++AC   G +D+
Sbjct: 103 TQFDVYSFWITIKAFCENGNVSKGFELLAQM--ETMGVSPNVFIYTILIEACCRNGDIDQ 160

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A+ ++  +    +     +YTI IN   + G  +    +Y  M   GV+P+    ++LI 
Sbjct: 161 AKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLIT 220

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                GK+  AF++  E   +G++   ++Y+ L+G         KA  L E MK   + P
Sbjct: 221 EYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINP 280

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           T  T N L+  LC+  QL K +  L  +K +GLCP  +TY+IL+    +  +  V   L+
Sbjct: 281 TTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELV 340

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSR 456
            + ++ G+ P+ V +  ++    R
Sbjct: 341 REMEDRGISPSKVTYTILMNTFVR 364



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 170/370 (45%), Gaps = 6/370 (1%)

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
           + C +   S+G F++L  ++  G+  +  +YT LI  C ++G +D    +F  M + G+ 
Sbjct: 116 AFCENGNVSKG-FELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLA 174

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
            N + Y  +I+G  K G     F  Y  M+   V P+   +N+LIT   + G +  AF V
Sbjct: 175 ANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKV 234

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
             E++     V  + +T   L+      GQV +A  + + + + +I  T   + + ++  
Sbjct: 235 FDEISK--RGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGL 292

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
             TG  + A S  + +   G+ P  V  + LI      G      E+++E +++GIS   
Sbjct: 293 CNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSK 352

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++Y+ LM     + + +KA E++  MK I L P   T   LI  LC    + +  ++   
Sbjct: 353 VTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKS 412

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC---SR 456
           M  + L PN + Y+ ++    ++ +    L  L +  ++GV PN+  +   I +     +
Sbjct: 413 MVEMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVKNGVTPNVASYISTIQILCKDGK 472

Query: 457 RYEKARTLNE 466
             E  R L E
Sbjct: 473 SIEAKRLLKE 482



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/461 (22%), Positives = 197/461 (42%), Gaps = 29/461 (6%)

Query: 69  NVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           N     + ++++   FKL+     +P+  +FN  + + A S + +   +      E   +
Sbjct: 46  NASLQSQLLEQSLDGFKLMVLKGHSPSSFSFNNALDLLAKSGNLD---RTWGFFTEYLGR 102

Query: 125 ADCKLYTTLITTCA--KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
               +Y+  IT  A  ++G V   FE+  +M   G+ PNV  Y  LI+ C + G + +A 
Sbjct: 103 TQFDVYSFWITIKAFCENGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAK 162

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
             +  M    +  ++ ++  +I    + G     F++  +M  ++  V P+  T  +L+ 
Sbjct: 163 VMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKM--KLVGVLPNLYTYNSLIT 220

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
                G++  A +V+  I K  +      Y I I    + G    A  + + M +  + P
Sbjct: 221 EYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINP 280

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
                + L+D   + G+++ A   L++ K  G+   +++Y+ L+   S   N     EL 
Sbjct: 281 TTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELV 340

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER 421
             M+   + P+  T   L+      D + K  E+   MK +GL P+  TY +L+   C +
Sbjct: 341 REMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIK 400

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR--RYEKARTLNEHVLSFNSGRPQI 478
            + VE   +  S   E  + PN V++  +I G C     Y+  + L E V   N   P +
Sbjct: 401 GNMVEASKLYKSMV-EMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVK--NGVTPNV 457

Query: 479 ENKWTSLALM-----------VYREAIVAGTIPTVEVVSKV 508
            +  +++ ++           + +E   AG  P   + SKV
Sbjct: 458 ASYISTIQILCKDGKSIEAKRLLKEMTEAGLKPPESLCSKV 498



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 126/262 (48%), Gaps = 20/262 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK-----EAF 81
           +YN LI    R+G++S+   LLE M+R  +    + ++     +C + +  K     E  
Sbjct: 249 TYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKL 308

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +   L P  TL T+N+L+S  +   +S    +++R +++ G+      YT L+ T  +S 
Sbjct: 309 KLIGLCP--TLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSD 366

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            ++  +E+FH M   G+ P+ HTYG LI G    G + +A   Y  M   +++P+ V++N
Sbjct: 367 DIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYN 426

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I    +     +A   L EM    + V P+  +  + ++     G+   A+ + K + 
Sbjct: 427 TMINGYCKECNSYKALKFLEEMVK--NGVTPNVASYISTIQILCKDGKSIEAKRLLKEMT 484

Query: 262 KYNIKGTPEVYTIAINCCSQTG 283
           +  +K  PE      + CS+ G
Sbjct: 485 EAGLK-PPE------SLCSKVG 499


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 200/430 (46%), Gaps = 35/430 (8%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           +DV + +  +NRL++Q      I+  + +   G L   K YH   +    SQK     FR
Sbjct: 41  NDVDDAVSLFNRLLQQNPTPPNIEFNKIL---GSLVKSKHYHTVLY---LSQKM---EFR 91

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             K    P L   N+L++          AF VL  + + G K +     TLI     +GK
Sbjct: 92  GIK----PNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGK 147

Query: 143 V-----------DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           +           DA+ ++F++M+   I P+V+T+  L+DG  K G+V +A     +M  +
Sbjct: 148 IHDKHCIVGKLKDAV-DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQ 206

Query: 192 NVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
            +KP  V +N+L+        V++A   F+ +A++      V PD  +   L+       
Sbjct: 207 GIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLG-----VSPDIQSYSILINGFCKIK 261

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            +D A E+ K +H   I      Y+  I+   ++G   +A  + D+M  +G  P+ V  S
Sbjct: 262 MMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYS 321

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKS 367
           +++D      +V+ A  +L + KNQGI   + +Y+ L+ G C + K  + A +++E +  
Sbjct: 322 SILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGK-LEDARKVFEDLLV 380

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
                 V T   +I   CD     + + +LS M+  G  PN  TY I++++  +KD+ E+
Sbjct: 381 KGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEM 440

Query: 428 GLMLLSQAKE 437
              LL +  E
Sbjct: 441 AEKLLCEMIE 450



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 172/380 (45%), Gaps = 12/380 (3%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R  +  P P    FN ++     SK       + + ++  G+K +      LI +  + G
Sbjct: 52  RLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLG 111

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDG-CAKA---------GQVAKAFGAYGIMRSK 191
            + + F V  +++  G +PN  T   LI G C            G++  A   +  M  +
Sbjct: 112 HIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILE 171

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           N+ PD   F  L+    + G V  A +VLA M   +  + P  +T  +LM       QV+
Sbjct: 172 NINPDVYTFTILVDGFCKEGRVKEAKNVLAMM--MIQGIKPGVVTYNSLMDGYFLVKQVN 229

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +A+ ++  + +  +    + Y+I IN   +    + A  +  +M  K +IP+ V  S+LI
Sbjct: 230 KAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLI 289

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D    +GK+  A +++ E  ++G    I++YSS++ A         A+ L   MK+  ++
Sbjct: 290 DGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQ 349

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P + T   LI  LC   +L    +V  D+   G   N  TY++++     K   +  L L
Sbjct: 350 PNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTL 409

Query: 432 LSQAKEDGVIPNLVMFKCII 451
           LS+ +++G IPN   ++ II
Sbjct: 410 LSKMEDNGCIPNAKTYEIII 429



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 99/459 (21%), Positives = 180/459 (39%), Gaps = 54/459 (11%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y +  TT   +  VD    +F+ ++     P    +  ++    K+            M 
Sbjct: 30  YFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPPNIEFNKILGSLVKSKHYHTVLYLSQKME 89

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            + +KP+ V  N LI +  Q G +  AF VL ++    +   P+ IT+  L+K     G+
Sbjct: 90  FRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGY--KPNTITLNTLIKGLCLNGK 147

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +     +                          G  + A  +++ M  + + PD    + 
Sbjct: 148 IHDKHCI-------------------------VGKLKDAVDLFNKMILENINPDVYTFTI 182

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           L+D     G+V+ A  +L     QGI  G+++Y+SLM      K   KA  ++  M  + 
Sbjct: 183 LVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLG 242

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           + P + + + LI   C    + + ME+L +M    + PN +TYS L+    +   +   L
Sbjct: 243 VSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYAL 302

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 489
            L+ +  + G  PN+V +  I+    + +                  Q++N    L  M 
Sbjct: 303 KLVDEMHDRGQPPNIVTYSSILDALCKNH------------------QVDNAIALLTQM- 343

Query: 490 YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF-- 547
            +   +   + T  ++ K  G  Q     D R ++ E+L V    L       +I GF  
Sbjct: 344 -KNQGIQPNMYTYTILIK--GLCQSGKLEDAR-KVFEDLLVKGHNLNVYTYTVMIQGFCD 399

Query: 548 -GEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLE 585
            G +D  A +LL +    G +P     EI ++   +K E
Sbjct: 400 KGLFD-EALTLLSKMEDNGCIPNAKTYEIIILSLFKKDE 437


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 189/404 (46%), Gaps = 50/404 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA 145
           P +  +  L++ C S+     A  V + ++E G K     Y  ++    K G    K+  
Sbjct: 31  PDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKITG 90

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
           +FE    M NAGI P+ +TY  LI  C +     +A   +  M+S    PD+V +N L+ 
Sbjct: 91  LFE---GMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLD 147

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
             G+S  +  A +VL EM  EV+   P  +T  +L+ A A  G ++ A E+   + +  I
Sbjct: 148 VYGKSRRIKEAIEVLREM--EVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGI 205

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     YT  ++   +TG  E A  V+++M   G  P+    +ALI   G+ GK     +
Sbjct: 206 KLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMK 265

Query: 326 ILQEAK-------------------NQGIS------------VGII----SYSSLMGACS 350
           + +E K                     G+             VG +    +Y++L+ A S
Sbjct: 266 VFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYS 325

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNT 409
              ++ +A+ +Y+ M    + P +ST NA++ AL  G    ++ ++L++M+  G+C PN 
Sbjct: 326 RCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQD-GMCKPNE 384

Query: 410 ITYSILLVACERKDDVEVGLML-LSQAKEDGVI-PNLVMFKCII 451
           +T+  LL A    +  E+G ML L++    GVI P+ V+ K ++
Sbjct: 385 LTHCSLLHA--YANGKEIGRMLALAEEICSGVIEPHAVLLKTLV 426



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 192/430 (44%), Gaps = 9/430 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVC 102
           L E M+  G+L  +  Y+      C+     +EA   F+ + +    P   T+N L+ V 
Sbjct: 91  LFEGMKNAGILPDEYTYNT-LITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVY 149

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
             S+  + A +VLR ++  G       Y +LI+  A+ G ++   E+ ++MV  GI+ +V
Sbjct: 150 GKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDV 209

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY A++ G  + G+   A   +  MR+   KP+   FNALI   G  G       V  E
Sbjct: 210 FTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEE 269

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           +  ++    PD +T   L+      G       V+K + +       + Y   I+  S+ 
Sbjct: 270 I--KICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRC 327

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G ++ A ++Y  M   G+ PD    +A++      G  E + +IL E ++       +++
Sbjct: 328 GSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTH 387

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
            SL+ A +N K   + L L E + S  ++P    +  L+      D L +      ++K 
Sbjct: 388 CSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKR 447

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEK 460
            G  P+  T + ++    R+  V     +L+  KE G  P+L  +  ++ M S+   +E+
Sbjct: 448 KGFSPDLSTLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFER 507

Query: 461 ARTLNEHVLS 470
           +  + + +L+
Sbjct: 508 SEEVLKEILA 517



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 196/439 (44%), Gaps = 14/439 (3%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEA 80
           S  + +YN LI    R G + E ++L   M  +G+ LD+   Y A      ++ K  + A
Sbjct: 171 SPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDV-FTYTAMLSGFVRTGKD-ESA 228

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            R F+ +      P + TFN L+ +  +        +V   ++      D   + TL+  
Sbjct: 229 MRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAV 288

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             ++G    +  VF EM   G  P   TY  LI   ++ G   +A   Y  M    + PD
Sbjct: 289 FGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPD 348

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
              +NA++ A  + G  +++  +LAEM   +    P+ +T  +L+ A AN  ++ R   +
Sbjct: 349 LSTYNAVLAALARGGLWEQSEKILAEMQDGM--CKPNELTHCSLLHAYANGKEIGRMLAL 406

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            + I    I+    +    +   S+      A   + ++ +KG  PD   L+A+I   G 
Sbjct: 407 AEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMIAIYGR 466

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
              V    EIL   K  G +  + +Y+SLM   S ++N++++ E+ + + +  +KP + +
Sbjct: 467 RQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIIS 526

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            N +I A C   ++ +   + S+M+  GL P+ ITY+  + +       E  + ++    
Sbjct: 527 YNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMI 586

Query: 437 EDGVIPNLVMFKCII-GMC 454
           + G  PN   +  +I G C
Sbjct: 587 KHGCKPNQNTYNSVIDGYC 605



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 158/350 (45%), Gaps = 9/350 (2%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A  +L  + + G + D   YT+LIT C  +G+      VF +M   G +P + TY  +++
Sbjct: 17  AASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILN 76

Query: 171 GCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
              K G    K  G +  M++  + PD   +N LIT C +    + A  V  +M +    
Sbjct: 77  VYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKS--MG 134

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWE 286
             PD +T   L+      G+  R +E  +++ +  + G +P +  Y   I+  ++ G  E
Sbjct: 135 FVPDKVTYNTLLDV---YGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLE 191

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  + + M ++G+  D    +A++      GK E+A  + +E +  G    I ++++L+
Sbjct: 192 EAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALI 251

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
               N   + + ++++E +K     P + T N L+          +   V  +MK +G  
Sbjct: 252 KMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFV 311

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           P   TY+ L+ A  R    +  + +  +  + G+ P+L  +  ++   +R
Sbjct: 312 PERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALAR 361



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 138/321 (42%), Gaps = 36/321 (11%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           +I    K GKV     + + +   G EP+V+ Y +LI  C   G+  +A   +  M  + 
Sbjct: 4   IINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
            KP  + +N ++   G+ G                 P +     I  L +   NAG    
Sbjct: 64  CKPTLITYNVILNVYGKMGM----------------PWNK----ITGLFEGMKNAG---- 99

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
                       I      Y   I CC +   +E A +V++DM   G +PD+V  + L+D
Sbjct: 100 ------------ILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLD 147

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
             G + +++ A E+L+E +  G S  I++Y+SL+ A +     ++A+EL   M    +K 
Sbjct: 148 VYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKL 207

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V T  A+++      +    M V  +M++ G  PN  T++ L+     +      + + 
Sbjct: 208 DVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVF 267

Query: 433 SQAKEDGVIPNLVMFKCIIGM 453
            + K    +P++V +  ++ +
Sbjct: 268 EEIKICCCVPDIVTWNTLLAV 288



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 3/256 (1%)

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I   G+ G V  A  +L  ++ +    +PD     +L+ AC + G+   A  V+K + +
Sbjct: 4   IINMLGKEGKVSVAASLLNNLHKD--GFEPDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 263 YNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              K T   Y + +N   + G  W     +++ M   G++PDE   + LI         E
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYE 121

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  + ++ K+ G     ++Y++L+     ++  ++A+E+   M+     P++ T N+LI
Sbjct: 122 EAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLI 181

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           +A      L + ME+ + M   G+  +  TY+ +L    R    E  + +  + +  G  
Sbjct: 182 SAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCK 241

Query: 442 PNLVMFKCIIGMCSRR 457
           PN+  F  +I M   R
Sbjct: 242 PNICTFNALIKMHGNR 257



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/347 (18%), Positives = 144/347 (41%), Gaps = 33/347 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L++V   +        V + ++  G   +   Y TLI+  ++ G  D    +
Sbjct: 277 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAM 336

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M++ GI P++ TY A++   A+ G   ++      M+    KP+ +   +L+ A   
Sbjct: 337 YKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYAN 396

Query: 210 SGAVDRAFDVLAEMNA---EVHPV------------------------------DPDHIT 236
              + R   +  E+ +   E H V                               PD  T
Sbjct: 397 GKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLST 456

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           + A++        V +  E+   + +     +   Y   +   SQ+ ++E +  V  ++ 
Sbjct: 457 LNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEIL 516

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            KG+ PD +  + +I      G+++ A  I  E +  G+   +I+Y++ + + +    ++
Sbjct: 517 AKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFE 576

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +A+++  +M     KP  +T N++I   C  ++    ++ +S +  L
Sbjct: 577 EAIDVVCYMIKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSLHEL 623



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 7/208 (3%)

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           +  ++      G+V  A  +   +HK   +     YT  I  C   G +  A  V+  M 
Sbjct: 1   VAVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 297 KKGVIPDEVFLSALIDFAGHAG----KVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           ++G  P  +  + +++  G  G    K+   FE +   KN GI     +Y++L+  C   
Sbjct: 61  EEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGM---KNAGILPDEYTYNTLITCCRRG 117

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
             +++A  ++E MKS+   P   T N L+       ++ + +EVL +M+  G  P+ +TY
Sbjct: 118 SLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTY 177

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGV 440
           + L+ A  R   +E  + L +Q  E G+
Sbjct: 178 NSLISAYARDGLLEEAMELKNQMVERGI 205



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 30/267 (11%)

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           ++ +I+  G  GKV  A  +L      G    + +Y+SL+ AC +   +++A+ +++ M+
Sbjct: 1   VAVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 367 SIKLKPTVSTMNALITALCD-GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
               KPT+ T N ++      G    K   +   MK+ G+ P+  TY+ L+  C R    
Sbjct: 61  EEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLY 120

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
           E    +    K  G +P+ V +  ++ +    Y K+R + E                   
Sbjct: 121 EEAAAVFEDMKSMGFVPDKVTYNTLLDV----YGKSRRIKE------------------- 157

Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQ----LPYNADIRERLVENLGVSADALKRSNLC 541
           A+ V RE  V G  P++   + ++        L    +++ ++VE  G+  D    + + 
Sbjct: 158 AIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVER-GIKLDVFTYTAML 216

Query: 542 SLIDGFGEYDPRAFSLLEEAASFGIVP 568
           S     G+ D  A  + EE  + G  P
Sbjct: 217 SGFVRTGK-DESAMRVFEEMRTAGCKP 242



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 5/147 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+L+T+N LM + + S++ E + +VL+ +   G+K D   Y T+I    ++G++     +
Sbjct: 487 PSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNGRMKEASHI 546

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM  +G+ P+V TY   +   A      +A      M     KP++  +N++I    +
Sbjct: 547 FSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDGYCK 606

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHIT 236
               D A   ++ +    H +DP HI+
Sbjct: 607 LNRRDDAIKFISSL----HELDP-HIS 628


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 193/456 (42%), Gaps = 9/456 (1%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           P+P  +    ++ V  +    +RL  Q      + LL  M   G+      Y      +C
Sbjct: 107 PHPACRPNAVSYTVLMRALCADRLADQA-----VGLLRSMRSAGVRADVVTYGTLIRGLC 161

Query: 72  KS---QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
            +    KA++      +    P +  ++ L+     S   E   +V   + E G++ D  
Sbjct: 162 DAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVV 221

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +YT LI +  K GK      V   MV  G+EPNV TY  LI+   K G V +A G    M
Sbjct: 222 MYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKM 281

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
             K V PD V +N LI        +D A  +L EM    + V P+ +T  ++++   + G
Sbjct: 282 SEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIG 341

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           ++ +A +V  M+ +         Y + I    +      A  + D+MT  G+ PD    S
Sbjct: 342 RMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYS 401

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            LI       +V+ A ++L   +++GI   +  Y  L+ A       ++A  L+  M + 
Sbjct: 402 ILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN- 460

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
                V   + +I   C    L    E+L  +   GL P+ +TYSI++    +  D+E  
Sbjct: 461 NFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAA 520

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
             +L Q    G +P++ +F  +I   S + E  + L
Sbjct: 521 NGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVL 556



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 165/348 (47%), Gaps = 9/348 (2%)

Query: 81  FRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            R   L P+P       ++ +LM    + + ++ A  +LR ++ AG++AD   Y TLI  
Sbjct: 100 LRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRG 159

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
              + +VD   E+  EM  +GIEPNV  Y +L+ G  K+G+       +  M  K ++PD
Sbjct: 160 LCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPD 219

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V++  LI +  + G   +A  V+  M      ++P+ +T   L+      G V  A  V
Sbjct: 220 VVMYTGLIDSLCKVGKAKKAHGVMDMMVR--RGLEPNVVTYNVLINCMCKEGSVKEAIGV 277

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT--KKGVIPDEVFLSALIDFA 314
            K + +  +      Y   I   S   + + A  + ++M   K  V P+ V  +++I   
Sbjct: 278 LKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGL 337

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G++  AF++    +  G  V +++Y+ L+G        +KA+EL + M S+ L+P  
Sbjct: 338 CDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDS 397

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER 421
            T + LI   C   Q+ +  ++LS M+  G+ P    Y  LLVA CE+
Sbjct: 398 FTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQ 445



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 146/333 (43%), Gaps = 16/333 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN LI    ++G + E I +L+ M  KG+   D V +            + EA      
Sbjct: 257 TYNVLINCMCKEGSVKEAIGVLKKMSEKGVAP-DVVTYNTLIKGLSDVLEMDEAMWLLEE 315

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               K +  P + TFN ++           AFQV  +++E G   +   Y  LI    + 
Sbjct: 316 MVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRV 375

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            KV    E+  EM + G+EP+  TY  LI G  K  QV +A      MR + ++P+   +
Sbjct: 376 HKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHY 435

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
             L+ A  + G ++RA ++  EM+    P+D   +    ++     AG +  A+E+ K I
Sbjct: 436 IPLLVAMCEQGMMERARNLFNEMDNN-FPLDV--VAYSTMIHGACKAGDLKTAKELLKSI 492

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +      Y+I IN  +++GD E A  V   MT  G +PD     +LI      G++
Sbjct: 493 VDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEI 552

Query: 321 EAAFEILQE--AKNQGISVGIISYSSLMGACSN 351
               E+++E   KN  +   IIS  S     SN
Sbjct: 553 NKVLELIREMITKNIALDSKIISTLSTSLVASN 585



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 168/402 (41%), Gaps = 48/402 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           + GR  +   +  +M  KG+     +Y     ++CK  KA K       +V     P + 
Sbjct: 197 KSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVV 256

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+N+L++        + A  VL+ + E G+  D   Y TLI   +   ++D    +  EM
Sbjct: 257 TYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEM 316

Query: 154 VNAG--IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           V     ++PNV T+ ++I G    G++ +AF    +M       + V +N LI    +  
Sbjct: 317 VRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVH 376

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V +A +++ EM +    ++PD  T   L+K      QVDRA ++   +    I+  PE+
Sbjct: 377 KVRKAMELMDEMTS--LGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIE--PEL 432

Query: 272 ------------------------------------YTIAINCCSQTGDWEFACSVYDDM 295
                                               Y+  I+   + GD + A  +   +
Sbjct: 433 FHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSI 492

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             +G+ PD V  S +I+    +G +EAA  +L++    G    +  + SL+   S     
Sbjct: 493 VDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEI 552

Query: 356 QKALELYEHM--KSIKL-KPTVSTMNALITALCDGDQLPKTM 394
            K LEL   M  K+I L    +ST++  + A  +G  L +++
Sbjct: 553 NKVLELIREMITKNIALDSKIISTLSTSLVASNEGKALLQSL 594



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 123/263 (46%), Gaps = 4/263 (1%)

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQVDRAR 254
           D V +N ++TA  + G  DRA  +L  M+ E HP   P+ ++   LM+A       D+A 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            + + +    ++     Y   I       + + A  +  +M + G+ P+ V  S+L+   
Sbjct: 136 GLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGY 195

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             +G+ E   ++  E   +GI   ++ Y+ L+ +       +KA  + + M    L+P V
Sbjct: 196 CKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNV 255

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI  +C    + + + VL  M   G+ P+ +TY+ L+       +++  + LL +
Sbjct: 256 VTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEE 315

Query: 435 A--KEDGVIPNLVMFKCII-GMC 454
               ++ V PN+V F  +I G+C
Sbjct: 316 MVRGKNIVKPNVVTFNSVIQGLC 338



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 2/159 (1%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   Y+T+I    K+G +    E+   +V+ G+ P+  TY  +I+  AK+G +  A G  
Sbjct: 465 DVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVL 524

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M +    PD  VF++LI      G +++  +++ EM  +   +D   I+  +     +
Sbjct: 525 KQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVAS 584

Query: 246 NAGQ--VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           N G+  +    +    I K NI    E+  +  N C QT
Sbjct: 585 NEGKALLQSLPDFSAEISKGNINSPQELMKVLHNVCPQT 623


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 166/332 (50%), Gaps = 4/332 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+ +L+   ++    E A ++   ++E G++AD  +YT++I+   +SG V     +F EM
Sbjct: 301 TYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEM 360

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            + G+ P+ HTYGALI G  KAGQ+  A      M+ K +  + V+FN LI    +SG V
Sbjct: 361 TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMV 420

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A  +   M  E   ++ D     ++        + D A+ +   + +  +      +T
Sbjct: 421 DEALRLQVVM--EKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFT 478

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+   + G++  A  V+ +M +KG +P+ +  + LID     G ++ A ++  E +N+
Sbjct: 479 TLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENR 538

Query: 334 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           G+   + + +SL+ G C + K    AL+L++ M    L P V T  A+I+ L    +  +
Sbjct: 539 GLIPDVYTCTSLIHGECIDGK-VDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEE 597

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
             ++  +MK  GL P+   YS L+ +    D+
Sbjct: 598 AFKLYDEMKETGLTPDDTVYSSLVGSLHSADE 629



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 180/364 (49%), Gaps = 4/364 (1%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F++L  V A +K    A +    +++ G   D +     +    + G+VD+    F  MV
Sbjct: 162 FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMV 221

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           N  +E  V++   ++DG  K G V         + +K VK + V +NA I    +   + 
Sbjct: 222 NLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLG 281

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
              ++L  M  E   V  + +T   L+   +N G+++ A+ +++ + +  I+    VYT 
Sbjct: 282 GVAEILTLMEKE--GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTS 339

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+C  ++G+ + A  ++D+MT KG+IP      ALI     AG++EAA  ++ E + +G
Sbjct: 340 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 399

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I +  + +++L+     +    +AL L   M+   L+  V   N++ + LC  ++  +  
Sbjct: 400 IDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 459

Query: 395 EVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
            +L  M   G+ PNT++++ L+ + C+  + VE    +  + +E G +PN++ +  +I  
Sbjct: 460 GLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAK-RVFREMEEKGNVPNIITYNVLIDG 518

Query: 454 CSRR 457
            S+R
Sbjct: 519 YSKR 522



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 168/360 (46%), Gaps = 4/360 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+N  +       D  G  ++L L+++ G+  +   YT LI   +  GK++    +F EM
Sbjct: 266 TYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEM 325

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              GIE +V+ Y ++I    ++G V +A   +  M  K + P    + ALI    ++G +
Sbjct: 326 REKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQM 385

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY- 272
           + A  ++ EM  +   +D + +    L+     +G VD A  +  ++ K  ++     Y 
Sbjct: 386 EAAQMLVNEMQGK--GIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 443

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +IA   C      E A  +   M ++GV P+ +  + LID     G    A  + +E + 
Sbjct: 444 SIASGLCKLNRKDE-AKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEE 502

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G    II+Y+ L+   S   N ++A +L + +++  L P V T  +LI   C   ++  
Sbjct: 503 KGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDM 562

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            +++  +M   GL PN +TY+ ++    +    E    L  + KE G+ P+  ++  ++G
Sbjct: 563 ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVG 622



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 152/331 (45%), Gaps = 16/331 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H ++ +   G+I E   L E+M  KG+     VY +     C+S   +K A   F  + 
Sbjct: 306 IHGFSNI---GKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGN-VKRALVLFDEMT 361

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +    P+  T+  L+     +   E A  ++  +Q  G+  +  ++ TLI    +SG VD
Sbjct: 362 DKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVD 421

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +   M   G+E +V  Y ++  G  K  +  +A G    M  + V P+ + F  LI
Sbjct: 422 EALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLI 481

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G    A  V  EM  + +   P+ IT   L+   +  G +   +E +K+  +  
Sbjct: 482 DIYCKEGNFVEAKRVFREMEEKGNV--PNIITYNVLIDGYSKRGNM---KEAHKLKDELE 536

Query: 265 IKG-TPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
            +G  P+VYT    I+     G  + A  ++D+M ++G++P+ V  +A+I      G+ E
Sbjct: 537 NRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSE 596

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            AF++  E K  G++     YSSL+G+  +A
Sbjct: 597 EAFKLYDEMKETGLTPDDTVYSSLVGSLHSA 627



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 9/225 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           +N LI      G + E + L   ME+KGL      Y++    +CK  +  +     F +V
Sbjct: 407 FNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMV 466

Query: 88  P---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               +P   +F  L+ +     +   A +V R ++E G   +   Y  LI   +K G + 
Sbjct: 467 ERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMK 526

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++  E+ N G+ P+V+T  +LI G    G+V  A   +  M  + + P+ V + A+I
Sbjct: 527 EAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMI 586

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           +   + G  + AF +  EM      + PD     +L+ +  +A +
Sbjct: 587 SGLSKDGRSEEAFKLYDEMKET--GLTPDDTVYSSLVGSLHSADE 629



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 8/181 (4%)

Query: 288 ACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           A   ++ M KKG   DE    V+L AL       G+V++     +   N  + V + S +
Sbjct: 178 ALEAFEHMEKKGFHIDERSCLVYLLAL----RRGGQVDSCLRFFRRMVNLDVEVTVYSLT 233

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            ++       + +   +L + + +  +K  V T NA I        L    E+L+ M+  
Sbjct: 234 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 293

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 463
           G+  N +TY++L+        +E    L  + +E G+  ++ ++  II    R     R 
Sbjct: 294 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 353

Query: 464 L 464
           L
Sbjct: 354 L 354


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 206/480 (42%), Gaps = 65/480 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----- 89
           L + G + +  +LL  +   G+  ++ + ++   + C     + +A   FK +       
Sbjct: 83  LCKAGELDKAKELLGQLRESGV-KLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCV 141

Query: 90  PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + TFN +L  +C+  + SE AF +   + +AG + +   Y+TL+    K+G++D    
Sbjct: 142 PDVVTFNSLLKGLCSGERMSE-AFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACR 200

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF-------- 200
           ++ EMV     P++  Y + + G  KA +VA+A      M +K  K D V F        
Sbjct: 201 LWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILC 260

Query: 201 ---------NALITACGQSGAVDRAFDVLAEMNAEVHPVD-----------------PDH 234
                    N +I    +SG +D A     EM +  HP                   PD 
Sbjct: 261 KKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDG 320

Query: 235 ITIGALMKA-------------------CANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           + +   MK+                      A Q+D A+E+   +  Y +      Y+  
Sbjct: 321 VLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSAL 380

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           ++   + G  + AC + ++M+K+GV PD    +++++    AGKV+ A   L+  K +G 
Sbjct: 381 VDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGS 440

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           +  +++Y++L+     A    +A+     M + K  P V +   +ITALC   Q      
Sbjct: 441 TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHA 500

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +  +M   G+ P+T+ Y  LL    R    ++ L LL   K     P+ VM K ++ G+C
Sbjct: 501 IFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELL---KTSLCKPDFVMHKMVVDGLC 557



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 166/359 (46%), Gaps = 22/359 (6%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           L ++ G +     Y   +   AK+      +E F +M   G  P+  TY  ++ G  KAG
Sbjct: 28  LGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLCKAG 87

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           ++ KA    G +R   VK + + ++ +I  C ++  VD A ++   M+A    V PD +T
Sbjct: 88  ELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCV-PDVVT 146

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +L+K   +  ++  A  +++ + K   +     Y+  ++   + G  + AC ++++M 
Sbjct: 147 FNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRLWEEMV 206

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA------CS 350
           +K  +PD V  ++ +     A +V  A +  ++   +G     +++S+++G         
Sbjct: 207 EKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAE 266

Query: 351 NAKN-----------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            A+N             +A + +E M S    P+    N LI A+C   +LP  + +   
Sbjct: 267 EAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQR 326

Query: 400 MKSLG--LC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           MKS+    C PN  TY+I++    +   ++    L+++    G+ P++V +  ++ G+C
Sbjct: 327 MKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLC 385



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 176/431 (40%), Gaps = 38/431 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L + GR+ E   L E+M  K  +     Y +    +CK+ +  +      K+V   + + 
Sbjct: 189 LCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKAD 248

Query: 94  --TFNMLMSV-CASSKDSEGAFQVLRLVQEAG-LKADCK---------------LYTTLI 134
              F+ ++ + C      E   Q++  +  +G L   CK               L+ TLI
Sbjct: 249 AVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLI 308

Query: 135 TTCAKSGKVD---AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
               KS ++     +F+    M      PN+ TY  ++D   KA Q+ +A      M + 
Sbjct: 309 HAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANY 368

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + PD V ++AL+    + G +DRA D+L EM+ E   V PD  T  +++ A + AG+VD
Sbjct: 369 GLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKE--GVFPDSFTDASILNALSKAGKVD 426

Query: 252 RAREVYKMIHKYNIKG---TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
                Y + H   +K    TP++  Y   ++   + G  + A +    M      PD   
Sbjct: 427 -----YALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFS 481

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            + +I     +G+   A  I QE   +G+    + Y SL+   +       ALEL   +K
Sbjct: 482 YTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALEL---LK 538

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +   KP       ++  LC   +     EV+  M   G   +  TY  ++    +   V+
Sbjct: 539 TSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVD 598

Query: 427 VGLMLLSQAKE 437
               L+  A E
Sbjct: 599 KARQLVDDASE 609



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/359 (20%), Positives = 144/359 (40%), Gaps = 42/359 (11%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
            H    Q      L R G + E     E+M  +      ++++     VCKS++ + +  
Sbjct: 263 GHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKR-LPDGV 321

Query: 82  RFFKLVPN-------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
             F+ + +       P L T+N+++     +K  + A +++  +   GL  D   Y+ L+
Sbjct: 322 LLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALV 381

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K GK+D   ++  EM   G+ P+  T  ++++  +KAG+V  A      M+++   
Sbjct: 382 DGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGST 441

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V +N L+    ++G +D A   LA+M A      PD  +   ++ A   +GQ   A 
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAA--KCTPDVFSYTIIITALCRSGQAAGAH 499

Query: 255 EVYKMIHKYNIKGTPEVY--------------------------------TIAINCCSQT 282
            +++ + K  +     +Y                                 + ++   + 
Sbjct: 500 AIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVDGLCKA 559

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
           G  E AC V + M   G   D      ++      GKV+ A +++ +A     SV  +S
Sbjct: 560 GKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASETHTSVERLS 618


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 165/371 (44%), Gaps = 38/371 (10%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T ++ M+     +  +  F VL  V + GL+     +TTLI    K G+     E
Sbjct: 125 SPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVE 184

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F +MV  G +P+V+TY  +I+G  K G+ A A G    M     +P+ V ++ LI +  
Sbjct: 185 LFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLC 244

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   V+ A D+ + M A+   + PD  T                                
Sbjct: 245 RDRLVNEALDIFSYMKAK--GISPDIFT-------------------------------- 270

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  I    +   W+ A ++ ++MT   ++PD V  + L+D     GKV  A  +L+
Sbjct: 271 ---YTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLK 327

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
                G+   +++YSSLM   S   +  +A +L+  M +   KP + + N LI   C   
Sbjct: 328 TMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAK 387

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ + M++ ++M   GL PN ++Y+ L+    +   +     L      +G +P+L  + 
Sbjct: 388 RIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYS 447

Query: 449 CII-GMCSRRY 458
            ++ G C + Y
Sbjct: 448 ILLDGFCKQGY 458



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 170/375 (45%), Gaps = 2/375 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N +++      ++  A  +L+ ++EAG + +   Y+TLI +  +   V+   ++
Sbjct: 196 PDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDI 255

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M   GI P++ TY +LI G  K  +  +A      M S N+ PD V FN L+    +
Sbjct: 256 FSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCK 315

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V  A  VL  M      V+P+ +T  +LM   +    V  AR+++ ++     K   
Sbjct: 316 EGKVSEALGVLKTMTE--MGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNI 373

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN   +    + A  ++++M  +G+ P+ V  + LI      GK+  A ++ + 
Sbjct: 374 FSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRN 433

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G    + +YS L+          KA  L+  M+S  LKP +     L+ A+C    
Sbjct: 434 MCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGN 493

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
                ++ S++   GL P+   Y+ ++    ++  ++  L      + DG  P+ + +  
Sbjct: 494 HKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNV 553

Query: 450 IIGMCSRRYEKARTL 464
           II    +  +++R L
Sbjct: 554 IIRGLLQHKDESRAL 568



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 107/449 (23%), Positives = 197/449 (43%), Gaps = 35/449 (7%)

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           TY    D  +    +  A  ++  M  +   P  + F  L++A  + G   + +DV+  +
Sbjct: 59  TYQHKNDASSSFRNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMG---QYYDVVISL 115

Query: 224 NAEVHPV--DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
           + ++  V   P+  T+   M       +VD    V   + K  ++ T   +T  IN   +
Sbjct: 116 SKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCK 175

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
            G++  A  ++DDM  KG  PD    + +I+     G+  AA  +L++ +  G    +++
Sbjct: 176 VGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVT 235

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           YS+L+ +    +   +AL+++ +MK+  + P + T  +LI  LC   +  +   +L++M 
Sbjct: 236 YSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMT 295

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE-- 459
           SL + P+ +T+++L+    ++  V   L +L    E GV PN+V +  ++   S   +  
Sbjct: 296 SLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVV 355

Query: 460 KARTLNEHVLSFNSGRPQI-----------ENKWTSLALMVYREAIVAGTIP-TVEVVSK 507
           +AR L  HV+     +P I           + K    A+ ++ E I  G  P  V   + 
Sbjct: 356 EARKL-FHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTL 414

Query: 508 VLGCLQLPYNADIRER--LVENLGVSADALKRSNLCSLIDGFGE--YDPRAFSLLEEAAS 563
           + G  QL     +RE   L  N+  + +         L+DGF +  Y  +AF L     S
Sbjct: 415 IHGFCQL---GKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQS 471

Query: 564 FGIVPCVSFKEIPVVV--------DARKL 584
             + P +    I V          DARKL
Sbjct: 472 TYLKPNLVMYTILVHAMCKSGNHKDARKL 500


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 197/449 (43%), Gaps = 55/449 (12%)

Query: 69  NVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           N C  +    +A  +F L+     NPT+ TFN +++      +   A ++   ++E G  
Sbjct: 309 NACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFS 368

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ------V 178
            +  +Y TL+    K  ++D    ++ EM   GI P+  T+  L+ G  K G+      +
Sbjct: 369 PNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRL 428

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            K     G++      PDR +F+  ++    +G +D A + L +M  +   + P  I   
Sbjct: 429 LKDISVLGLL------PDRSLFDISVSGLCWAGRLDEAMEFLMDMLEK--GLSPSIIAFN 480

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--------------------------- 271
           +++ A + AG  D+A E YK++  + +  +P                             
Sbjct: 481 SVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEK 540

Query: 272 --------YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                   +T+ ++   + GD   A S++ +M ++G+ PD V  SA ID     G VE A
Sbjct: 541 GLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEA 600

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           + +  E   +G+     +Y+SL+          +AL+L + M+   L P + T N +I  
Sbjct: 601 YNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGG 660

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++   + V  DM   GL P+ ITY+ L+    +  D+     L+++    G  P+
Sbjct: 661 LCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPD 720

Query: 444 LVMFKCII-GMC-SRRYEKARTLNEHVLS 470
           L  +   I G C SRR  +A  + + ++S
Sbjct: 721 LTTYNIRIHGFCSSRRMNRAVLMLDELVS 749



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 172/394 (43%), Gaps = 8/394 (2%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           F N     +A++   R  ++   P+ S   +L  +     D    +++ + V   G +  
Sbjct: 206 FVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPC 265

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              ++ +I    + G +     + H M     EPN   Y  +I+ C   G+ + A   + 
Sbjct: 266 KYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALAWFN 325

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKA 243
           +M  +   P  V FN +I A  + G V  A   FD L EM        P+ I    LM  
Sbjct: 326 LMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMG-----FSPNAIMYNTLMNG 380

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
                ++D+A  +Y+ + K  I      + I ++   + G  E    +  D++  G++PD
Sbjct: 381 YVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPD 440

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
                  +     AG+++ A E L +   +G+S  II+++S++ A S A    KA E Y+
Sbjct: 441 RSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYK 500

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M    L P+ ST ++L+  L    +L +  E++  M   GL  N + +++LL    ++ 
Sbjct: 501 LMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRG 560

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           DV     L  + +  G+ P++V F   I   S++
Sbjct: 561 DVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQ 594



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/433 (21%), Positives = 190/433 (43%), Gaps = 45/433 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           + GR  +   LL+D+   GLL    ++      +C + + + EA  F   +     +P++
Sbjct: 418 KYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGR-LDEAMEFLMDMLEKGLSPSI 476

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
             FN +++  + +   + AF+  +L+   GL       ++L+   + +G++    E+  +
Sbjct: 477 IAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQ 536

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+  G+  N   +  L+D   K G V  A   +G M  + + PD V F+A I    + G 
Sbjct: 537 MIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGL 596

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V+ A++V  EM  +   + P++    +L+      G+++ A ++ K+             
Sbjct: 597 VEEAYNVFLEMLRK--GLIPNNFAYNSLICGFCKCGKLNEALKLEKV------------- 641

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
                                 M  +G++PD    + +I      G++ +A  +  +   
Sbjct: 642 ----------------------MRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQ 679

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+S  II+Y++L+     A +   A  L   M +    P ++T N  I   C   ++ +
Sbjct: 680 TGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNR 739

Query: 393 TMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            + +L ++ S G+ PNT+TY S+L   C   D ++  ++L ++  +   +PN+V    ++
Sbjct: 740 AVLMLDELVSAGIVPNTVTYNSMLNGVCS--DILDRAMILTARLLKMAFVPNVVTANLLL 797

Query: 452 GMCSRRYEKARTL 464
               ++    RTL
Sbjct: 798 SQFYKQGMPERTL 810



 Score = 40.8 bits (94), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 88/228 (38%), Gaps = 27/228 (11%)

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           SLM A  NA+   +ALE+   M+ + ++P+ S +  L   L          ++  D+   
Sbjct: 201 SLMRAFVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRR 260

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 463
           G  P   T+S +++   RK  + +G  LL    +    PN   +  +I  C  R      
Sbjct: 261 GPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIR------ 314

Query: 464 LNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER 523
                     GR       TS AL  +   I  G  PTV   + V+       N     +
Sbjct: 315 ----------GR-------TSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARK 357

Query: 524 LVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
           L + L   G S +A+  + L +      E D +A  L EE    GI P
Sbjct: 358 LFDGLKEMGFSPNAIMYNTLMNGYVKMREID-QANMLYEEMRKKGIAP 404


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 176/397 (44%), Gaps = 37/397 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P++ T+++LM      +D E    +LR ++  G+K +   YT  I    ++ + D  + +
Sbjct: 272 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQARRFDEAYRI 331

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF--------- 200
             EM N G +P+V T+  LI     AG+++ A   +  M+  + KPDRV +         
Sbjct: 332 LAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFAD 391

Query: 201 --------------------------NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
                                      A+I A  Q G V  A ++  EM  +   + P+ 
Sbjct: 392 NGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK--GIVPEQ 449

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
            +  +L+     A +   A E++K +  +  K     + + IN   ++G+   A   Y+ 
Sbjct: 450 YSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYEL 509

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M  KG++PD V  +A++     +G++  A  +  E K  G+S   I+Y+ ++  CS A  
Sbjct: 510 MKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK 569

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           + +A++++  M      P V  +N+LI  L    +  +  ++   +K + L P   TY+ 
Sbjct: 570 FDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNT 629

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           LL    R+  V+  + LL +       PNL+ +  I+
Sbjct: 630 LLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTIL 666



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 183/424 (43%), Gaps = 11/424 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH V   ++SY   IR      R  E   +L +ME +G    D + H     V      I
Sbjct: 302 AHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGC-KPDVITHTVLIQVLCDAGRI 360

Query: 78  KEA----FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A    ++  K    P   T+  L+   A + +S+   ++   ++  G   +   YT +
Sbjct: 361 SDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAV 420

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    + G+V    E+F EM   GI P  ++Y +LI G  KA +   A   +  M     
Sbjct: 421 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGP 480

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KP+       I   G+SG   +A      M ++   + PD +   A++   A +G++  A
Sbjct: 481 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSK--GIVPDVVAGNAVLFGLAKSGRLGMA 538

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           + V+  +    +      YT+ I CCS+   ++ A  ++ DM +   +PD + +++LID 
Sbjct: 539 KRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDT 598

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+ + A++I  + K   +     +Y++L+         ++ + L E M      P 
Sbjct: 599 LYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPN 658

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + T N ++  LC    +   +++L  M + G  P+  +Y+ ++    +++       +  
Sbjct: 659 LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFC 718

Query: 434 QAKE 437
           Q K+
Sbjct: 719 QMKK 722



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 196/471 (41%), Gaps = 35/471 (7%)

Query: 26  SEQLHSYNRLIRQGRI----SEC---IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           +E L  +    R+ R+    + C   +DL+ D  R G  DM     A  F+V + Q    
Sbjct: 150 AEALERFRSAARRPRVVHTTASCNYMLDLMRDHGRVG--DM-----AEVFDVMQRQ---- 198

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
                   +    + TF  +            A   L +++EAG+  +   Y  L+    
Sbjct: 199 --------IVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLV 250

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           KSG      EV+  M+  G+ P+V TY  L+    K   V         M +  VKP+  
Sbjct: 251 KSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVY 310

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +   I   GQ+   D A+ +LAEM  E     PD IT   L++   +AG++  A++V+ 
Sbjct: 311 SYTICIRVLGQARRFDEAYRILAEMENE--GCKPDVITHTVLIQVLCDAGRISDAKDVFW 368

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + K + K     Y   ++  +  G+ +    +++ M   G   + V  +A+ID     G
Sbjct: 369 KMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVG 428

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +V  A E+  E K +GI     SY+SL+     A  +  ALEL+++M     KP   T  
Sbjct: 429 RVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHV 488

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
             I       +  K ++    MKS G+ P+ +  + +L    +   + +   +  + K  
Sbjct: 489 LFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAM 548

Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 489
           GV P+ + +  +I  CS    KA   +E V  F      IEN      L+V
Sbjct: 549 GVSPDTITYTMMIKCCS----KASKFDEAVKIFYD---MIENNCVPDVLVV 592



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 107/504 (21%), Positives = 203/504 (40%), Gaps = 27/504 (5%)

Query: 18   HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
            H+NY  +    L +YN ++    + G +++ +D+L  M  KG +     Y+   + + K 
Sbjct: 652  HSNYPPN----LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 707

Query: 74   QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE----AGLKADCKL 129
            ++   EAF  F  +    +  +  L ++  S        + L +++E     G K D   
Sbjct: 708  ER-YNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSS 766

Query: 130  YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
              +L+    K    +   E    + ++GI  +      LI    K  +  +A       +
Sbjct: 767  CHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFK 826

Query: 190  SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            S  V      +N+LI        +D A  + AEM        PD  T   L+ A   + +
Sbjct: 827  SFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKE--LGCGPDEFTYNLLLDAMGKSMR 884

Query: 250  VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
            ++   +V + +H+   + T   Y   I+   ++   E A  +Y ++  +G  P       
Sbjct: 885  IEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGP 944

Query: 310  LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
            L+D    AG++E A  +  E    G       Y+ L+     A N +K   L++ M    
Sbjct: 945  LLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQG 1004

Query: 370  LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
            + P + +   +I  LC   QL   +     +  +GL P+ ITY++L+    +   +E  +
Sbjct: 1005 INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAV 1064

Query: 430  MLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE--------HVLSFNSG-RPQ 477
             L ++ ++ G++PNL  +  +I   G   +  E  +   E        +V ++N+  R  
Sbjct: 1065 SLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGY 1124

Query: 478  IENKWTSLALMVYREAIVAGTIPT 501
              +  T  A   Y   IV G +P 
Sbjct: 1125 SVSGSTDSAYAAYGRMIVGGCLPN 1148



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 122/564 (21%), Positives = 229/564 (40%), Gaps = 45/564 (7%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVPN---P 90
            L + GR+     +  +++  G+   D + +      C       EA + F+ ++ N   P
Sbjct: 529  LAKSGRLGMAKRVFHELKAMGV-SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 587

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
             +   N L+     +   + A+Q+   ++E  L+     Y TL+    + GKV  +  + 
Sbjct: 588  DVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 647

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             EM ++   PN+ TY  ++D   K G V  A      M +K   PD   +N +I    + 
Sbjct: 648  EEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 707

Query: 211  GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
               + AF +  +M      + PD+ T+  ++ +    G +   +E   +I +Y ++  P 
Sbjct: 708  ERYNEAFSIFCQMK---KVLIPDYATLCTILPSFVKIGLM---KEALHIIKEYFLQ--PG 759

Query: 271  VYTIAINCCS------QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
              T   +C S      +    E +    + +   G+  D+ FL  LI       K   A 
Sbjct: 760  SKTDRSSCHSLMEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAH 819

Query: 325  EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            E++++ K+ G+S+   SY+SL+    +      A  L+  MK +   P   T N L+ A+
Sbjct: 820  ELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 879

Query: 385  CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
                ++ + ++V  +M   G     +TY+ ++    +   +E  + L       G  P  
Sbjct: 880  GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 939

Query: 445  VMFKCIIG--MCSRRYEKARTLNEHVLSFN------------SGRPQIENKWTSLALMVY 490
              +  ++   + + R E A  L   +L +             +G     N  T     ++
Sbjct: 940  CTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGN--TEKVCHLF 997

Query: 491  REAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDG 546
            ++ +  G  P ++  + ++  L    QL        +L+E +G+  D L   NL  LIDG
Sbjct: 998  QDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLE-MGLEPD-LITYNL--LIDG 1053

Query: 547  FGEYD--PRAFSLLEEAASFGIVP 568
             G+      A SL  E    GIVP
Sbjct: 1054 LGKSKRLEEAVSLFNEMQKKGIVP 1077


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 168/372 (45%), Gaps = 11/372 (2%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N L++    +++ +    +L  ++E  ++ +   +  LI    K  +VD   EVF +M N
Sbjct: 309 NALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM-N 367

Query: 156 AG------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACG 208
            G      +EP+V TY  LIDG  K G+  +  G    MRS+    P+ V +N LI    
Sbjct: 368 GGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYC 427

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++  ++ A ++  +MN +  P  P+ +T+  L+      G+++ A E +  +    +KG 
Sbjct: 428 KASMIEAARELFDQMNKDGVP--PNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGN 485

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  I       + E A  ++D+M + G  PD +    LI     AGK++ A  +L 
Sbjct: 486 AVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLS 545

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + K  G S  I+S++ L+          +A E+ + M++  +KP   T N LI+      
Sbjct: 546 KMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTG 605

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
                  ++  M   GL P  +TY  L+ A C   +  E   +    +    V PN V++
Sbjct: 606 DFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIY 665

Query: 448 KCIIGMCSRRYE 459
             +I    R+ +
Sbjct: 666 NILINSLCRKNQ 677



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 182/405 (44%), Gaps = 14/405 (3%)

Query: 69  NVCKSQKAIKEAFRFFK---------LVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLV 118
           ++CK ++ + EA   F+          +  P + T+N L+  +C   +  EG   V R+ 
Sbjct: 349 HLCKFRR-VDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMR 407

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
            +     +   Y  LI    K+  ++A  E+F +M   G+ PNV T   L+DG  K G++
Sbjct: 408 SQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRI 467

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
             A   +  M+ K +K + V + ALI A      +++A ++  EM        PD I   
Sbjct: 468 NGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEA--GCSPDAIVYY 525

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+   + AG++DRA  V   + +         + + IN   +    + A  +  +M   
Sbjct: 526 TLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENA 585

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD V  + LI      G    A  ++++   +G+   +++Y +L+ A     N  +A
Sbjct: 586 GIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEA 645

Query: 359 LELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           ++++  M S  K+ P     N LI +LC  +Q+   + ++ DMK  G+ PNT T++ +  
Sbjct: 646 MKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFK 705

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
             + K+ +     L+ +  E    P+ +  + +    S   E A+
Sbjct: 706 GLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGETAK 750



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 153/333 (45%), Gaps = 10/333 (3%)

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T LI+   +SG+ D  ++V H ++  G      +  AL+    +A +  +       M+ 
Sbjct: 274 TQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKE 333

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN---AEVHPVDPDHITIGALMKACANA 247
            +++P+ V F  LI    +   VD A +V  +MN   +    V+PD IT   L+      
Sbjct: 334 MDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKV 393

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCC----SQTGDWEFACSVYDDMTKKGVIPD 303
           G   R  E   ++ +   +      T+  NC      +    E A  ++D M K GV P+
Sbjct: 394 G---RQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPN 450

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V L+ L+D     G++  A E   E + +G+    ++Y++L+ A  N  N +KA+EL++
Sbjct: 451 VVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFD 510

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M      P       LI+ L    +L +   VLS MK  G  P+ +++++L+    RK+
Sbjct: 511 EMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKN 570

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            ++    +L + +  G+ P+ V +  +I   S+
Sbjct: 571 KLDEAYEMLKEMENAGIKPDGVTYNTLISHFSK 603



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 195/437 (44%), Gaps = 25/437 (5%)

Query: 35  LIRQGRISECIDLLEDM--ERKGLLDMDKVYHARFFNVCKSQK---AIKE--------AF 81
           L R+GR+ + + LL++M   +          H  F  + K  K   A+ E         F
Sbjct: 202 LFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKF 261

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              ++ PN    T  ++  +C S + ++ A+ VL  + + G   +      L+T   ++ 
Sbjct: 262 AEHEVFPNSIWLT-QLISRLCRSGR-TDRAWDVLHGLMKLGGVMEAASCNALLTALGRAR 319

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-----VKPD 196
           +   M  +  EM    I+PNV T+G LI+   K  +V +A   +  M         V+PD
Sbjct: 320 EFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPD 379

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            + +N LI    + G  +    ++  M ++   + P+ +T   L+     A  ++ ARE+
Sbjct: 380 VITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCM-PNTVTYNCLIDGYCKASMIEAAREL 438

Query: 257 YKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           +  ++K  +   P V T+   ++   + G    A   +++M  KG+  + V  +ALI   
Sbjct: 439 FDQMNKDGVP--PNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAF 496

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
            +   +E A E+  E    G S   I Y +L+   S A    +A  +   MK     P +
Sbjct: 497 CNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDI 556

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            + N LI   C  ++L +  E+L +M++ G+ P+ +TY+ L+    +  D      L+ +
Sbjct: 557 VSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKK 616

Query: 435 AKEDGVIPNLVMFKCII 451
             ++G++P +V +  +I
Sbjct: 617 MVKEGLVPTVVTYGALI 633



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 122/287 (42%), Gaps = 4/287 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPTLS 93
           + GRI+  ++   +M+ KGL      Y A    F NV   +KA++      +   +P   
Sbjct: 463 KHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAI 522

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
            +  L+S  + +   + A  VL  ++EAG   D   +  LI    +  K+D  +E+  EM
Sbjct: 523 VYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEM 582

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            NAGI+P+  TY  LI   +K G  + A      M  + + P  V + ALI A   +G +
Sbjct: 583 ENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNL 642

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A  +  +M++    V P+ +    L+ +     QVD A  +   +    +K     + 
Sbjct: 643 DEAMKIFRDMSS-TSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFN 701

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                  +      A  + D MT+    PD + +  L ++    G+ 
Sbjct: 702 AMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGET 748


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 120/482 (24%), Positives = 197/482 (40%), Gaps = 53/482 (10%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           H  ++ LHS+ R   +G +           R  L   + V  A   +   S +A  + FR
Sbjct: 154 HLAAQLLHSFRR---RGHV-----------RPSLQAANAVLSALARSPSTSPQASLDVFR 199

Query: 83  -FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
               L  +P   TFN+L+    S      A   L  +Q  GL  D   Y TL+    + G
Sbjct: 200 SLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKG 259

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +     +   M   GI P   TY  L+   A+ G + +A      M +   +PD   +N
Sbjct: 260 MLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYN 319

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            L     Q+G VD AF +  EM   +  V PD +T   L+ AC    +   A  + + + 
Sbjct: 320 VLAAGLCQAGKVDEAFKLKDEME-HLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMR 378

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              +K +   + I +    + G  E A      MT++G+ PD +  + LID    A  V 
Sbjct: 379 DKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVA 438

Query: 322 AAF-----------------------------------EILQEAKNQGISVGIISYSSLM 346
            AF                                   E+L+    +G     +SY ++M
Sbjct: 439 KAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVM 498

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A       + AL L++ M   KL P++ T N LI  LC   +L + ++ L+++   GL 
Sbjct: 499 AAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLV 558

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTL 464
           P+  TY+I++ A  ++ D+E      ++  E+   P++V    ++ G+C   + EKA  L
Sbjct: 559 PDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKL 618

Query: 465 NE 466
            E
Sbjct: 619 FE 620



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 189/432 (43%), Gaps = 18/432 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF--- 83
           +YN L+    R G I +  +++E M   G       Y+     +C++ K + EAF+    
Sbjct: 282 TYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGK-VDEAFKLKDE 340

Query: 84  --FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
                + +P + T+N L+  C   + S  A  +L  +++ G+K+    +  ++    + G
Sbjct: 341 MEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREG 400

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +++        M   G+ P+V TY  LID   KA  VAKAF     M    +K D    N
Sbjct: 401 QLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLN 460

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            L+    +    + A ++L   +       PD ++ G +M A     + + A  ++  + 
Sbjct: 461 TLLYNLCKEKRYEEAEELL--RSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMS 518

Query: 262 KYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           K  +  TP +YT    I      G    A    +++ KKG++PD+   + +I      G 
Sbjct: 519 KRKL--TPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGD 576

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +E AF+   +         +++ ++LM G C + K  +KA++L+E       K  V T N
Sbjct: 577 LEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGK-LEKAIKLFESWAEKGKKVDVITYN 635

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI ALC    +   +   +DM++ GL P+  TY+++L A       E    +L +  E 
Sbjct: 636 TLIQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDES 695

Query: 439 GVIPNLVMFKCI 450
           G +     +  I
Sbjct: 696 GKLSERFSYPLI 707



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 203/454 (44%), Gaps = 20/454 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQ 74
           +S  + +YN L+    R+G + E   LL  M+++G+      Y      +AR   + ++ 
Sbjct: 241 LSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQAT 300

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGL-KADCKLYTT 132
             + EA   F   P+  L T+N+L + +C + K  E AF++   ++   +   D   Y T
Sbjct: 301 NVV-EAMTAFGFEPD--LWTYNVLAAGLCQAGKVDE-AFKLKDEMEHLSIVSPDVVTYNT 356

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+  C K  +      +  EM + G++ ++ T+  ++ G  + GQ+ +A G   +M  + 
Sbjct: 357 LVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEG 416

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + PD + +N LI A  ++  V +AF ++ EM      +  D  T+  L+       + + 
Sbjct: 417 LAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRS--GLKMDTFTLNTLLYNLCKEKRYEE 474

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A E+ +   +         Y   +    +    E A  ++D+M+K+ + P     + LI 
Sbjct: 475 AEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIK 534

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                GK+  A + L E   +G+     +Y+ ++ A     + +KA + +  M     KP
Sbjct: 535 GLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKP 594

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V T N L+  LC   +L K +++       G   + ITY+ L+ A  +  DV+  L   
Sbjct: 595 DVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFF 654

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
           +  +  G+ P+   +  ++   S   R E+A+ +
Sbjct: 655 ADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNM 688


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/427 (25%), Positives = 196/427 (45%), Gaps = 17/427 (3%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS 93
           QG  +E + ++  +  K   + D V ++   N        ++A   F L+      P L 
Sbjct: 313 QGMYTEALQVV-GLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLV 371

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           TFN LM   AS+   E A ++L  + EA ++ +     +L   CA++   + + +VFHE 
Sbjct: 372 TFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEA 431

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               I  NV  + A I    +AGQ  +A     +M  +N++P+ V F  LI A G  G  
Sbjct: 432 KVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDY 491

Query: 214 DRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             A   +D + ++   +  V+P      AL+ A A  G  + AR ++  + K   K    
Sbjct: 492 REARTLYDKMVDLGIPL-TVEP----CSALINAFAKHGMYNEARTIFDDMRKAGCKANVV 546

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            YT  +       D + AC   ++M   G+ PD +    L      A + E   +I + +
Sbjct: 547 TYTSLMIAYRMYDDAQLAC---EEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIEKSS 603

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           + +GI    ++Y+  + ACS  K+W+ AL LYE MK  +L+ T + +  L++A+    +L
Sbjct: 604 RARGILFDDVAYTETLLACSRLKDWETALFLYEGMKKRRLRLTNTMVINLLSAVGRSGKL 663

Query: 391 PKTMEVLSDM-KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
            +  +V  ++ + +G  P    Y+IL+ +  R       L +L   K+D + PN   ++ 
Sbjct: 664 DRLHKVFLELQQQIGFVPTLQMYNILIDSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEP 723

Query: 450 IIGMCSR 456
           I+   S+
Sbjct: 724 ILSCLSQ 730



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 168/367 (45%), Gaps = 6/367 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            F  L+S    +   E + +V   ++ +   +A   +Y  +I   A+  + D    +F+E
Sbjct: 53  NFPALISEITRTGALEHSLRVFNWMKNQKCYRARTDIYNCMIWLHARHQRADQARGLFYE 112

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS--KNVKPDRVVFNALITACGQS 210
           M     +P+V TY AL++   +AGQ   A   +  M    K + P R  +N LI ACG S
Sbjct: 113 MKVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSS 172

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G   +A ++   M    + V PD +T   ++ A  + GQ   A   Y  +    +     
Sbjct: 173 GQWFKALEICKRMTD--NGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRY 230

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            + I +NC ++ G +E A +++ +M K  G  PD V  +AL+      G++  A E    
Sbjct: 231 SHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDM 290

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G++  I+++++L+GA ++   + +AL++   +   K +P V + ++L+ A      
Sbjct: 291 MIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGY 350

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             K  EV   MK     PN +T++ L+ A       E    LL    E  + PN+V    
Sbjct: 351 PEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICS 410

Query: 450 IIGMCSR 456
           +   C+R
Sbjct: 411 LFAACAR 417



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 175/414 (42%), Gaps = 40/414 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMF 147
           P + T+N LM+V   +     A Q+   + +A   +      Y  LI  C  SG+     
Sbjct: 120 PDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSGQWFKAL 179

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E+   M + G+ P++ TY  ++      GQ   A   Y  + SK V  DR   N ++   
Sbjct: 180 EICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILNCL 239

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM-------- 259
            + G  + A ++  EM  +++  +PD +T  AL+   A  GQ+ +A+E + M        
Sbjct: 240 TKLGRFEDAINLFKEMR-KMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAP 298

Query: 260 -IHKYNI------------------------KGTPEV--YTIAINCCSQTGDWEFACSVY 292
            I  +N                         K  P+V  Y+  +N   + G  E A  V+
Sbjct: 299 TIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVF 358

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           D M ++   P+ V  + L+D    AGK E A E+L +     I   +++  SL  AC+ A
Sbjct: 359 DLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARA 418

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           +  +K  +++   K  ++   V   NA ITA  +  Q  +   +L  M+   L PN +T+
Sbjct: 419 RCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTF 478

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 464
            +L+ A     D      L  +  + G+   +     +I   ++   Y +ART+
Sbjct: 479 LLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTI 532



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/464 (20%), Positives = 191/464 (41%), Gaps = 50/464 (10%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           + +YN L+    R G+    + + +DM +    +   +  +    N C S     +A   
Sbjct: 122 VETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSGQWFKALEI 181

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            K + +    P L T+N+++S   S      A      +    +  D   +  ++    K
Sbjct: 182 CKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHNIILNCLTK 241

Query: 140 SGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
            G+ +    +F EM    G EP+V T+ AL+   A  GQ+ KA   + +M  + + P  V
Sbjct: 242 LGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIV 301

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            FN L+ A    G    A  V+  +       +PD ++  +L+ A   AG  ++A+EV+ 
Sbjct: 302 TFNTLLGAYASQGMYTEALQVVGLLVKA--KFEPDVVSYSSLLNAFGKAGYPEKAQEVFD 359

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
           ++ + + K     +   ++  +  G +E A  +  DM +  + P+ V + +L      A 
Sbjct: 360 LMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARAR 419

Query: 319 KVEAAFEILQEAKNQGISVGIISYSS---------------------------------- 344
             E   ++  EAK + I++ + ++++                                  
Sbjct: 420 CPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFL 479

Query: 345 -LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            L+ A  +  ++++A  LY+ M  + +  TV   +ALI A        +   +  DM+  
Sbjct: 480 LLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKA 539

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           G   N +TY+ L++A    DD ++    +  A   G+ P+ + F
Sbjct: 540 GCKANVVTYTSLMIAYRMYDDAQLACEEMVAA---GITPDSIAF 580



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 3/215 (1%)

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           AG+  D   + TL     K+ + + + ++       GI  +   Y   +  C++      
Sbjct: 571 AGITPDSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDDVAYTETLLACSRLKDWET 630

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A   Y  M+ + ++    +   L++A G+SG +DR   V  E+  ++  V P       L
Sbjct: 631 ALFLYEGMKKRRLRLTNTMVINLLSAVGRSGKLDRLHKVFLELQQQIGFV-PTLQMYNIL 689

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           + + +   +  +  EV   I K  ++   + Y   ++C SQ   WE    +Y ++  +G+
Sbjct: 690 IDSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWETYLEIYGEVLAQGM 749

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
            PD   L   +      G  E A   L EA+ QG+
Sbjct: 750 EPDYNILKISVTAYTSLGMEEEA--SLTEARLQGL 782


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 208/454 (45%), Gaps = 12/454 (2%)

Query: 10  QFPYPNGKHANYAHDVSE-QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKV-Y 63
           +F   N  ++N   D  E  + +YN L++      R+     LL +M  KG  D D+V Y
Sbjct: 161 RFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGC-DPDEVSY 219

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
                ++CK  K +KEA R   +   P++  +N L++        E AFQ+L  +   G+
Sbjct: 220 TTLISSLCKLGK-VKEA-RELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
             +   YTT+I   + +G V+    V  +M   G  PN+HT+ +LI G    G   +A  
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALD 337

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            +  M  + V P+ V +NAL+       ++  A  V  +M  E++   P+  T  AL+  
Sbjct: 338 FWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQM--EINGCCPNVRTYSALIDG 395

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
            A AG +D A EV+  +  +        YT  ++   +   +  A  + ++M  +   P+
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V  +  I     +G+V+ A ++  +  N G      +Y+ L+ +    + + +A  L +
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M+   ++  + T N +I   C    L + +E+L  M   G  P+ IT +I++ A  ++ 
Sbjct: 516 DMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQG 575

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
            V + + L+ +       P+++ +  +I G+C+ 
Sbjct: 576 KVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTH 609



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 192/418 (45%), Gaps = 26/418 (6%)

Query: 72  KSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           K +  I  A  +FK + N      T  T+ M++   AS ++ +    +L+ ++  G+   
Sbjct: 51  KHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCS 110

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
             L+ ++I +  ++G  +   + F+ M +  ++P V  Y  ++D      +       Y 
Sbjct: 111 EDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYS 170

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M+   ++P+   +N L+ A  ++  VD A  +L EM+++    DPD ++   L+ +   
Sbjct: 171 NMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSK--GCDPDEVSYTTLISSLCK 228

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
            G+V  ARE+        +  TP V  Y   IN   +   +E A  + D+M  KG+ P+ 
Sbjct: 229 LGKVKEAREL-------AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNV 281

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           +  + +I+    AG VE +  +L +   +G S  + +++SL+          +AL+ ++ 
Sbjct: 282 ISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDR 341

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M    + P V   NAL+  LC    L   + V + M+  G CPN  TYS L+    +  D
Sbjct: 342 MIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGD 401

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQIEN 480
           ++    + +     G  PN+V + C++ +  R   + +A  L E++        Q+EN
Sbjct: 402 LDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENM--------QVEN 451



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 145/370 (39%), Gaps = 42/370 (11%)

Query: 21  YAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +A   S  LH++  LI+    +G   E +D  + M R+G++                   
Sbjct: 308 FARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVV------------------- 348

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
                        P +  +N LM    S +    A  V   ++  G   + + Y+ LI  
Sbjct: 349 -------------PNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDG 395

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
            AK+G +D   EV++ M+  G  PNV  Y  ++D   +     +A+     M+ +N  P+
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V FN  I     SG VD A  V  +M        P+  T   L+ +     +   A  +
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNS--GCFPNTTTYNELLDSLLKDRRFGEAFGL 513

Query: 257 YKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            K +    I+     Y   I   CC+  G    A  +   M  +G  PD + ++ +ID  
Sbjct: 514 VKDMEHRGIELNLVTYNTIIYGYCCA--GMLGEALELLGKMVVRGTKPDAITVNIVIDAY 571

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              GKV  A +++           II+Y+SL+         ++A+     M S  + P V
Sbjct: 572 CKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNV 631

Query: 375 STMNALITAL 384
           +T N L+  L
Sbjct: 632 ATWNVLVRHL 641


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 191/431 (44%), Gaps = 50/431 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----- 87
           N   +QGR  +C  LLE M  +G+      Y+     +CK ++   EA    + +     
Sbjct: 18  NGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER-WHEAEELVRDMISRGG 76

Query: 88  -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--------------- 131
              P L T++ L+S    +   E + ++L+ V   GL+ D  +YT               
Sbjct: 77  RSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEA 136

Query: 132 --------------------TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171
                               TLI+ C +   ++    +   M  +G++ +V TY  L+DG
Sbjct: 137 LELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDG 196

Query: 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
             KAG++ +A      M++    PD V +++ +    +SG V  A  VL +M    H  D
Sbjct: 197 LCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDH--D 254

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACS 290
           P+ +T   ++     +G++D A E+ + +   +  G   V Y+  ++   + G  + A S
Sbjct: 255 PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARS 314

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V + M + G  PD V  S+L++    AGK+E A E ++E   +G     ++Y SL+    
Sbjct: 315 VMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLC 374

Query: 351 NAKNWQKALELYEHMKSIKLK-----PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +     +A  + E M S         P+VST NALI  LC   ++   ++    M+S G 
Sbjct: 375 SCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGC 434

Query: 406 CPNTITYSILL 416
            P+ ++YS ++
Sbjct: 435 DPDGVSYSTIV 445



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 152/329 (46%), Gaps = 4/329 (1%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G  PN  T+ AL++G +K G+          M ++ ++P+ V +N L+    +   
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              A +++ +M +      PD +T   L+     AG+V+ +RE+ K +    ++    +Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  +    ++     A  + ++M + G  P  +  + LI        +E A  +LQ    
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+   +++Y++LM     A   Q+A +L E MK+    P V   ++ +  LC   ++  
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLN 240

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ-AKEDGVIPNLVMFKCII 451
             +VL  M+     PN +TY+ +L    +   ++  L ++ Q A  DG   N+V +  ++
Sbjct: 241 AHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVV 300

Query: 452 -GMCS-RRYEKARTLNEHVLSFNSGRPQI 478
            G+C   R ++AR++ E  ++    RP +
Sbjct: 301 DGLCKLGRTQEARSVME-AMARAGCRPDV 328



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 151/330 (45%), Gaps = 8/330 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGI 187
           +  L+   +K G+      +   M   GI+PNV +Y  L++G  K  +   A+      I
Sbjct: 13  FNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMI 72

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
            R     PD V ++ L++   ++G V+ + ++L E+ +    + PD +    +M +   +
Sbjct: 73  SRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVIS--RGLRPDALMYTKVMASLCKS 130

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
            ++  A E+ + + +     T   +   I+ C +  + E A S+   M   GV  D V  
Sbjct: 131 ARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTY 190

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMK 366
           + L+D    AG+++ A ++L+  K  G +  +++YSS + G C + K    A ++ E M+
Sbjct: 191 NTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLN-AHQVLEQMR 249

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDV 425
                P V T N ++  LC   ++   +E++  M S   C  N + YS ++    +    
Sbjct: 250 DSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRT 309

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +    ++      G  P++V +  ++ G+C
Sbjct: 310 QEARSVMEAMARAGCRPDVVTYSSLVNGLC 339



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 101/274 (36%), Gaps = 85/274 (31%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V   + +YN L+    + GR+ E   LLE M+  G       Y +  + +CKS K +
Sbjct: 180 ASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVL 239

Query: 78  KEAFRFFKLVPN----PTLSTFNMLM-SVCASSK------------DSEG---------- 110
             A +  + + +    P + T+N ++  +C S K             S+G          
Sbjct: 240 N-AHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYST 298

Query: 111 -------------AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
                        A  V+  +  AG + D   Y++L+    K+GK++   E   EM   G
Sbjct: 299 VVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEG 358

Query: 158 IEPN----------------------------------------VHTYGALIDGCAKAGQ 177
            +PN                                        V TY ALI G  KAG+
Sbjct: 359 CKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGR 418

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +  A   +  MRS+   PD V ++ ++    +SG
Sbjct: 419 IDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSG 452



 Score = 47.0 bits (110), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 10/156 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + GR  E   ++E M R G       Y +    +CK+ K I+EA    + +      P
Sbjct: 303 LCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGK-IEEAVEAVREMAMEGCKP 361

Query: 91  TLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDA 145
              T+ +++  +C+  + +E    V  +    G    C      Y  LI    K+G++D 
Sbjct: 362 NAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDD 421

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
             + F  M + G +P+  +Y  +++G A++G+  +A
Sbjct: 422 ALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQA 457


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 173/399 (43%), Gaps = 35/399 (8%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MFEVFH 151
           T+N L+  CA + D E A  ++  ++  G + D   Y+++I    +S K+D+  + +++ 
Sbjct: 187 TYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYT 246

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           E+    IE + H    +I G +KAG   +A     + +S  + P      A+I A G SG
Sbjct: 247 EIETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSG 306

Query: 212 AVDRA---FDVLAEMNAEVHP------------------------------VDPDHITIG 238
               A   F+ + E  +E                                 V PD  T  
Sbjct: 307 RTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYS 366

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+ A A+AG+ + AR V K +   N++    VY+  +      G+W+ +  V  DM   
Sbjct: 367 LLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSN 426

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV PD  F + +ID  G    ++ A    +   ++GI    +++++L+     +     A
Sbjct: 427 GVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMA 486

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            EL+  M+     P ++T N +I ++ +  +  +    LS M+S GL PN+ITY+ L+  
Sbjct: 487 EELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDV 546

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
             +       +  L   K  G  P   M+  +I   ++R
Sbjct: 547 YGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQR 585



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 154/332 (46%), Gaps = 2/332 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+     +   + A  V+  +++AG+K D + Y+ LI   A +G+ ++   V
Sbjct: 325 PRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIV 384

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM  + +EPN + Y  ++      G+  K+F     M+S  V+PDR  +N +I   G+
Sbjct: 385 LKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGK 444

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A      M +E   + PD +T   L+     +G+ + A E++  + +       
Sbjct: 445 YNCLDHAMATFERMLSEG--IRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCI 502

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN   +   WE        M  +G++P+ +  + L+D  G +G+   A E L+ 
Sbjct: 503 TTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEV 562

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K+ G       Y++L+ A +     + A+  +  M +  L P++  +N+LI A  +  +
Sbjct: 563 LKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRR 622

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
             +   VL  MK   + P+ +TY+ L+ A  R
Sbjct: 623 DAEAFAVLQYMKENNIEPDVVTYTTLMKALIR 654



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 5/287 (1%)

Query: 101 VCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           + AS +D    + +FQVL+ ++  G++ D   Y  +I T  K   +D     F  M++ G
Sbjct: 403 ILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEG 462

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I P+  T+  LI+   K+G+   A   +G M+ +   P    +N +I + G+    ++  
Sbjct: 463 IRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVS 522

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
             L++M ++   + P+ IT   L+     +G+   A E  +++     K T  +Y   IN
Sbjct: 523 LFLSKMQSQG--LLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALIN 580

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
             +Q G  E A + +  MT +G+ P  + L++LI+  G   +   AF +LQ  K   I  
Sbjct: 581 AYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEP 640

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +++Y++LM A    + +QK   +YE M +    P       L +AL
Sbjct: 641 DVVTYTTLMKALIRVEKFQKVPAVYEEMVTSGCTPDRKARAMLRSAL 687



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 204/497 (41%), Gaps = 66/497 (13%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           LY+ LI    +S K+   F +    V   +     TY ALI  CA+ G V KA      M
Sbjct: 157 LYSILINALGRSEKLYEAFLLSQRQVLTPL-----TYNALIGACARNGDVEKALNLMSKM 211

Query: 189 RSKNVKPDRVVFNALITACGQSGAVD---------------------------------- 214
           R    +PD V ++++I    +S  +D                                  
Sbjct: 212 RRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYTEIETDKIEIDGHLMNDIILGFSKAG 271

Query: 215 ---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
              RA   LA   A+ + ++P   T+ A++ A  N+G+   A  +++ I +   +     
Sbjct: 272 DPTRAMRFLAM--AQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRA 329

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +    +TG  + A  V  +M K GV PDE   S LID   HAG+ E+A  +L+E +
Sbjct: 330 YNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEME 389

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
              +      YS ++ +  +   WQK+ ++ + MKS  ++P     N +I      + L 
Sbjct: 390 ASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLD 449

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             M     M S G+ P+T+T++ L+    +     +   L  + ++ G  P +  +  +I
Sbjct: 450 HAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMI 509

Query: 452 GMC--SRRYEKARTLNEHVLSFNSGRPQIENK--WTSLALMVYREAIVAGTIPTVEVV-S 506
                 +R+E+        LS    +  + N   +T+L  +  +    +  I  +EV+ S
Sbjct: 510 NSMGEQQRWEQVSLF----LSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKS 565

Query: 507 KVLGCLQLPYNADIR---ERLVENLGVSADALKRSN--------LCSLIDGFGE--YDPR 553
                    YNA I    +R +  L V+A  L  +         L SLI+ FGE   D  
Sbjct: 566 TGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAE 625

Query: 554 AFSLLEEAASFGIVPCV 570
           AF++L+      I P V
Sbjct: 626 AFAVLQYMKENNIEPDV 642


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 199/434 (45%), Gaps = 8/434 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           NR  + G+ +E +  LE +  KG    D +   +      + K I++A R  +++ +   
Sbjct: 86  NRSCKAGKFNESLYFLECLVNKGYTP-DVILCTKLIKGFFNFKNIEKASRVMEILESHTE 144

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +N ++S        E A QVL  ++  G   D   Y  +I +     K+     V
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTV 204

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +++     P V TY  LI+     G + +A      M ++ + PD   +NA+I    +
Sbjct: 205 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 264

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V+RA +++  + ++    +PD I+   L++A  N G+ D   ++   +     +   
Sbjct: 265 EGMVERAAELITSLTSK--GCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 322

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+I I+   + G  + A SV   M +K + PD      LI      G+++ A  I+  
Sbjct: 323 VTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDY 382

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             + G    I++Y++++ A     N  +ALE++  ++ +   P VS+ N +I+AL     
Sbjct: 383 MISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGD 442

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             + + ++  M S G+ P+ ITY+ L+    R   VE  + LL   ++ G  P ++ +  
Sbjct: 443 RSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNI 502

Query: 450 I-IGMCS-RRYEKA 461
           + +G+C  RR + A
Sbjct: 503 VLLGLCKVRRIDDA 516



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 169/365 (46%), Gaps = 8/365 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N+++    + +    A  VL  +           YT LI      G ++   ++
Sbjct: 180 PDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKL 239

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM+  G+ P+++TY A+I G  K G V +A      + SK  +PD + +N L+ A   
Sbjct: 240 LEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLN 299

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGT 268
            G  D    ++AEM +     +P+ +T   L+ +    G++D A  V K MI K   + T
Sbjct: 300 QGKWDEGEKLVAEMFS--RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEK---ELT 354

Query: 269 PEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+ Y+    I+   + G  + A  + D M   G +PD V  + ++      G    A EI
Sbjct: 355 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 414

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             + +  G    + SY++++ A  +  +  +AL +   M S  + P   T N+LI+ LC 
Sbjct: 415 FNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCR 474

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              + + + +L DM+  G  P  I+Y+I+L+   +   ++  + + ++  E G  PN   
Sbjct: 475 DGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETT 534

Query: 447 FKCII 451
           +  +I
Sbjct: 535 YILLI 539



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 148/367 (40%), Gaps = 34/367 (9%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           I +G I+E + LLE+M  +GLL                                P + T+
Sbjct: 228 IVEGGINEAMKLLEEMLARGLL--------------------------------PDMYTY 255

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N ++         E A +++  +   G + D   Y  L+      GK D   ++  EM +
Sbjct: 256 NAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFS 315

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G EPN  TY  LI    + G++ +A     +M  K + PD   ++ LI+A  + G +D 
Sbjct: 316 RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDL 375

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  ++  M +  +   PD +    ++ A    G  ++A E++  +           Y   
Sbjct: 376 AIGIMDYMIS--NGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTM 433

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+     GD   A  +   M  KG+ PDE+  ++LI      G VE A  +L + +  G 
Sbjct: 434 ISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGF 493

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              +ISY+ ++      +    A+ ++  M     +P  +T   LI  +       + ME
Sbjct: 494 RPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAME 553

Query: 396 VLSDMKS 402
           + + + S
Sbjct: 554 LANSLFS 560



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 177/406 (43%), Gaps = 10/406 (2%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           +L   C + K +E  + +  LV + G   D  L T LI        ++    V  E++ +
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNK-GYTPDVILCTKLIKGFFNFKNIEKASRVM-EILES 141

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
             EP+V  Y A+I G  K  Q+  A      M+++   PD V +N +I +      +  A
Sbjct: 142 HTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLA 201

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEVYTI- 274
             VL ++   +    P  IT   L++A    G ++   E  K++ +   +G  P++YT  
Sbjct: 202 LTVLDQL--LLDNCMPTVITYTILIEATIVEGGIN---EAMKLLEEMLARGLLPDMYTYN 256

Query: 275 -AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I    + G  E A  +   +T KG  PD +  + L+    + GK +   +++ E  ++
Sbjct: 257 AIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 316

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G     ++YS L+ +        +A+ + + M   +L P   + + LI+ALC   +L   
Sbjct: 317 GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 376

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           + ++  M S G  P+ + Y+ +L A  +  +    L + ++ +  G  PN+  +  +I  
Sbjct: 377 IGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISA 436

Query: 454 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 499
                +++R L       + G    E  + SL   + R+ +V   I
Sbjct: 437 LWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAI 482



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 1/148 (0%)

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
           E  L  L++ +  AGK   +   L+   N+G +  +I  + L+    N KN +KA  + E
Sbjct: 78  ETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVME 137

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            ++S   +P V   NA+I+  C  +Q+    +VL+ MK+ G  P+ +TY+I++ +   + 
Sbjct: 138 ILES-HTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 196

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            + + L +L Q   D  +P ++ +  +I
Sbjct: 197 KLGLALTVLDQLLLDNCMPTVITYTILI 224



 Score = 45.4 bits (106), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 44/213 (20%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +++   +SY+ LI    ++GR+   I +++ M   G L     Y+     +CK+  A + 
Sbjct: 352 ELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQA 411

Query: 80  AFRFFKL----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
              F KL     P P +S++N ++S   S  D   A  ++  +   G+  D   Y +LI+
Sbjct: 412 LEIFNKLRGMGCP-PNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLIS 470

Query: 136 TCAKSG-----------------------------------KVDAMFEVFHEMVNAGIEP 160
              + G                                   ++D    +F EM+  G  P
Sbjct: 471 CLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRP 530

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           N  TY  LI+G   AG   +A      + S++V
Sbjct: 531 NETTYILLIEGIGFAGWRTEAMELANSLFSRDV 563


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 189/462 (40%), Gaps = 45/462 (9%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVC 102
           L E M+  G+L  +  Y+      C+     +EA   FK + +    P   T+N L+ V 
Sbjct: 91  LFEGMKNAGVLPDEYTYNT-LITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVY 149

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
             S+ ++ A +VLR ++  G       Y +LI+  A+ G +    E+ ++MV  GI  +V
Sbjct: 150 GKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDV 209

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY  L+ G  +AG+   A   +  MR+   KP+   FNALI   G  G       V  E
Sbjct: 210 FTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEE 269

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           +        PD +T   L+      G       V+K + +       + Y   I+  S+ 
Sbjct: 270 IKNSC--CVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRC 327

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G ++ A  +Y  M + G+ PD    +A++      G  E + +I  E K+       ++Y
Sbjct: 328 GSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTY 387

Query: 343 SSLMGACSNAKNWQKALELYEH-----------------------------------MKS 367
            SL+ A +N K   + L L E                                    +K 
Sbjct: 388 CSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKR 447

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
               P +ST+NA+++         KT E+L+ M   G  P+  TY+ L+    R ++ E 
Sbjct: 448 KGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFER 507

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNE 466
              +L +    G+ P+ + +  +I   C   R  E +R  +E
Sbjct: 508 SEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSE 549



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 116/508 (22%), Positives = 214/508 (42%), Gaps = 82/508 (16%)

Query: 30  HSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI   R+G +  E   + +DM+  G +  DKV +    +V    +  KEA    +
Sbjct: 105 YTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVP-DKVTYNALLDVYGKSRRTKEAMEVLR 163

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +     +P++ T+N L+S  A     + A ++   + E G+  D   YTTL++   ++G
Sbjct: 164 EMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAG 223

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK--------------------- 180
           K ++   VF EM  AG +PN+ T+ ALI      G+ A+                     
Sbjct: 224 KDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWN 283

Query: 181 ----AFGAYGI----------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
                FG  G+          M+     P+R  +N LI+A  + G+ D+A D+   M   
Sbjct: 284 TLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEA 343

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVY----------------KMIHKY-NIKGTP 269
              + PD  T  A++ A A  G  +++ +++                 ++H Y N K   
Sbjct: 344 --GITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIG 401

Query: 270 EVYTIAINCCS-----------------QTGDWEFACSV-YDDMTKKGVIPDEVFLSALI 311
            +  +A   CS                    D      V + ++ +KG  PD   L+A++
Sbjct: 402 RMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAML 461

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
              G         EIL      G +  + +Y+SLM   S ++N++++ E+ + + +  +K
Sbjct: 462 SIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIK 521

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P   + N +I A C   ++ +   + S+M+  GL P+ ITY+  + +       E  + +
Sbjct: 522 PDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDV 581

Query: 432 LSQAKEDGVIPNLVMFKCII-GMCSRRY 458
           +    + G  PN   +  ++ G C   +
Sbjct: 582 VRYMIKHGCKPNQNTYNSVVDGYCKHNH 609



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 173/414 (41%), Gaps = 77/414 (18%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE------------------ 152
           A  +L  + + G   D   YT+LIT C  +G+      VF +                  
Sbjct: 17  AASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILN 76

Query: 153 ------------------MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
                             M NAG+ P+ +TY  LI  C +     +A   +  M+S    
Sbjct: 77  VYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFV 136

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD+V +NAL+   G+S     A +VL EM  EV+   P  +T  +L+ A A  G +  A 
Sbjct: 137 PDKVTYNALLDVYGKSRRTKEAMEVLREM--EVNGCSPSIVTYNSLISAYARDGLLKEAM 194

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E+   + +  I      YT  ++   + G  E A  V+ +M   G  P+    +ALI   
Sbjct: 195 ELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMH 254

Query: 315 GHAGKVEAAFEILQEAKNQGISVGII---------------------------------- 340
           G+ GK     ++ +E KN      I+                                  
Sbjct: 255 GNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER 314

Query: 341 -SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            +Y++L+ A S   ++ +A+++Y+ M    + P +ST NA++ AL  G    ++ ++ ++
Sbjct: 315 DTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAE 374

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLML-LSQAKEDGVI-PNLVMFKCII 451
           MK     PN +TY  LL A    +  E+G ML L++    GVI P+ V+ K ++
Sbjct: 375 MKDGRCKPNELTYCSLLHA--YANGKEIGRMLALAEEICSGVIEPHAVLLKTLV 426



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/466 (20%), Positives = 187/466 (40%), Gaps = 54/466 (11%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           +I+   K GKV     + +++   G   +V+ Y +LI  C   G+  +A   +  M  + 
Sbjct: 4   IISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEG 63

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
            KP  + +N ++   G+ G                 P +     I  L +   NAG +  
Sbjct: 64  CKPTLITYNVILNVYGKMGM----------------PWNK----IKGLFEGMKNAGVL-- 101

Query: 253 AREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
                           P+ YT    I CC +    E A +V+ DM   G +PD+V  +AL
Sbjct: 102 ----------------PDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNAL 145

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           +D  G + + + A E+L+E +  G S  I++Y+SL+ A +     ++A+EL   M    +
Sbjct: 146 LDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGI 205

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
              V T   L++      +    M V ++M++ G  PN  T++ L+     +      + 
Sbjct: 206 NLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMK 265

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL----- 485
           +  + K    +P++V +  ++ +  +    +           +G     + + +L     
Sbjct: 266 VFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYS 325

Query: 486 -------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRS 538
                  A+ +Y+  + AG  P +   + VL  L      +  E++   +          
Sbjct: 326 RCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNEL 385

Query: 539 NLCSLIDGF--GEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDAR 582
             CSL+  +  G+   R  +L EE  S  I P     +  V+V+++
Sbjct: 386 TYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSK 431



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/381 (18%), Positives = 156/381 (40%), Gaps = 46/381 (12%)

Query: 69  NVCKSQKAIK---------EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVL 115
           N+C     IK         E  + F+ + N    P + T+N L++V   +        V 
Sbjct: 243 NICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVF 302

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           + ++ AG   +   Y TLI+  ++ G  D   +++  M+ AGI P++ TY A++   A+ 
Sbjct: 303 KEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARG 362

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA---EVHPV-- 230
           G   ++   +  M+    KP+ + + +L+ A      + R   +  E+ +   E H V  
Sbjct: 363 GLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVLL 422

Query: 231 ----------------------------DPDHITIGALMKACANAGQVDRAREVYKMIHK 262
                                        PD  T+ A++          +  E+   +++
Sbjct: 423 KTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNE 482

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                +   Y   +   S++ ++E +  V  ++  KG+ PD +  + +I      G+++ 
Sbjct: 483 SGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKE 542

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  I  E +  G+   +I+Y++ + + +    ++ A+++  +M     KP  +T N+++ 
Sbjct: 543 ASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVD 602

Query: 383 ALCDGDQLPKTMEVLSDMKSL 403
             C  +     +  +S +  L
Sbjct: 603 GYCKHNHRDDAIMFISSLHEL 623



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 9/215 (4%)

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           +  ++      G+V  A  +   +HK         YT  I  C   G +  A  V+  M 
Sbjct: 1   VAVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 297 KKGVIPDEVFLSALIDFAGHAG----KVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           ++G  P  +  + +++  G  G    K++  FE +   KN G+     +Y++L+  C   
Sbjct: 61  EEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGM---KNAGVLPDEYTYNTLITCCRRG 117

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
              ++A  +++ MKS+   P   T NAL+       +  + MEVL +M+  G  P+ +TY
Sbjct: 118 SLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTY 177

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           + L+ A  R   ++  + L +Q  E G+  NL +F
Sbjct: 178 NSLISAYARDGLLKEAMELKNQMVEGGI--NLDVF 210



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 114/269 (42%), Gaps = 30/269 (11%)

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           ++ +I   G  GKV  A  +L +    G  + + +Y+SL+ AC +   +++A+ +++ M+
Sbjct: 1   VAVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 367 SIKLKPTVSTMNALITALCD-GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
               KPT+ T N ++      G    K   +   MK+ G+ P+  TY+ L+  C R    
Sbjct: 61  EEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLH 120

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
           E    +    K  G +P+ V +  ++ +    Y K+R   E                   
Sbjct: 121 EEAAAVFKDMKSMGFVPDKVTYNALLDV----YGKSRRTKE------------------- 157

Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQ----LPYNADIRERLVENLGVSADALKRSNLC 541
           A+ V RE  V G  P++   + ++        L    +++ ++VE  G++ D    + L 
Sbjct: 158 AMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEG-GINLDVFTYTTLL 216

Query: 542 SLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
           S     G+ D  A  +  E  + G  P +
Sbjct: 217 SGFVRAGK-DESAMRVFAEMRAAGCKPNI 244


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 150/323 (46%), Gaps = 4/323 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y+  I    K G++    E+F EM   G  P+  TY  LI+G  K  Q+         M+
Sbjct: 94  YSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQ 153

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           ++   P  V +  LI     +G VD A D+L EM  E   + P+ +T  AL++   + G+
Sbjct: 154 ARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEM--EHRGITPNTVTYTALIQGLCDCGE 211

Query: 250 VDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           V+RA  V K +     +  P V  YT  I+   Q G +E      D+M   G  P+    
Sbjct: 212 VERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATY 271

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           +ALI      G    A  +L E    G  + ++ Y+SL+           A E+   M  
Sbjct: 272 TALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVE 331

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             + P V T  +LI  LCD   L + + ++ +M++ G+ PN++TY+ L+    + D  + 
Sbjct: 332 KGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDH 391

Query: 428 GLMLLSQAKEDGVIPNLVMFKCI 450
            L L+++ K +G++P   ++K +
Sbjct: 392 ALQLVNEMKSNGLMPAGDIYKIL 414



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 143/333 (42%), Gaps = 8/333 (2%)

Query: 58  DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQ 113
           D D + ++R  N    +  I EA   F+ +      P   T+N+L++        E    
Sbjct: 88  DTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVS 147

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           ++  +Q  G       YTTLI     +G+VDA  ++  EM + GI PN  TY ALI G  
Sbjct: 148 LMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLC 207

Query: 174 KAGQVAKAFGAYGIM--RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
             G+V +A      M  R     P+ V +  LI    Q G  +   + L EM   +    
Sbjct: 208 DCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEM--IISGCF 265

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P++ T  AL+      G    A  +   +     +    +Y   I+   + G+ +FA  +
Sbjct: 266 PNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREM 325

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
              M +KGV PD    ++LI     AG ++ A  ++QE + +GI    ++Y++L+   + 
Sbjct: 326 QILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQ 385

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           A     AL+L   MKS  L P       L  +L
Sbjct: 386 ADRTDHALQLVNEMKSNGLMPAGDIYKILFKSL 418



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 137/316 (43%), Gaps = 1/316 (0%)

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
           +C   + +E A ++ R ++E G   D   Y  LI    K  +++    +  EM   G  P
Sbjct: 101 LCKKGQIAE-AMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSP 159

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
            V TY  LI G   AG+V  A      M  + + P+ V + ALI      G V+RA  VL
Sbjct: 160 TVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVL 219

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
            EM    +   P+ +T   L+      G  +   E    +           YT  I+   
Sbjct: 220 KEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLC 279

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           Q G +  A  + ++M   G   D V  ++LID     G+++ A E+      +G++  + 
Sbjct: 280 QKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVF 339

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +Y+SL+    +A    +AL L + M++  + P   T   LI      D+    ++++++M
Sbjct: 340 TYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEM 399

Query: 401 KSLGLCPNTITYSILL 416
           KS GL P    Y IL 
Sbjct: 400 KSNGLMPAGDIYKILF 415



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 155/347 (44%), Gaps = 37/347 (10%)

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
           D D I+    +      GQ+  A E+++ + +         Y I IN   +    E   S
Sbjct: 88  DTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVS 147

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           + D+M  +G  P  V  + LI     AG+V+AA +IL E +++GI+   ++Y++L+    
Sbjct: 148 LMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLC 207

Query: 351 NAKNWQKALELYEHMKSIKLK-----PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +    ++A+ +   +K +KL+     P V T   LI  LC        ME L +M   G 
Sbjct: 208 DCGEVERAILV---LKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGC 264

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKART 463
            PN  TY+ L+    +K       +LL++    G   ++V++  +I G+C     + AR 
Sbjct: 265 FPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFARE 324

Query: 464 LNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER 523
           +   +L    G       +TSL         + G +    ++ + LG +Q     ++R +
Sbjct: 325 M--QILMVEKGVAPDVFTYTSL---------IQG-LCDAGLLDEALGLMQ-----EMRAK 367

Query: 524 LVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 568
                G+  +++  +   +LI+GF + D    A  L+ E  S G++P
Sbjct: 368 -----GIVPNSVTYT---TLINGFTQADRTDHALQLVNEMKSNGLMP 406


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 199/443 (44%), Gaps = 11/443 (2%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+   ++YN LI    R+    E   + ++M+  G  + DKV      +V    +   
Sbjct: 237 HGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGF-EPDKVTFNSLLDVYGKARRHD 295

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA    + +      P++ T+N L+S        E A  + + ++  G+K D   YTTLI
Sbjct: 296 EAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLI 355

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +   ++GK+DA    + EMV  G +PN+ TY ALI      G+  +    +  +RS    
Sbjct: 356 SGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFV 415

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V +N L+   GQ+G       V  EM    +   P+  T  +L+ + +  G  D A 
Sbjct: 416 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGY--IPERDTYVSLISSYSRCGLFDLAM 473

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           ++YK + +  I      Y   ++  ++ G WE A  ++ +M ++   PDE   S+L+   
Sbjct: 474 QIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAY 533

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
            +A +++    +  +  ++ I        +L+   S   N  +A + +  ++  +    +
Sbjct: 534 ANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDI 593

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           + +NA+++       + K  ++LS MK   +  +  TY+ L+    R  D E    +L++
Sbjct: 594 NVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTE 653

Query: 435 AKEDGVIPNLVMFKCIIGMCSRR 457
            K  GV P+   +  +I    R+
Sbjct: 654 IKSSGVRPDRYSYNTVIYAYGRK 676



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 154/348 (44%), Gaps = 5/348 (1%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK-AGQV 178
           +A    D   YT L++  +++G+      VF  MV++G++P + TY  ++   +K A   
Sbjct: 165 DAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPW 224

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            +       M+   V PDR  +N LI+ C +      A  V  EM A     +PD +T  
Sbjct: 225 KEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKAS--GFEPDKVTFN 282

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           +L+     A + D A EV + + +     +   Y   I+   + G  E A ++  +M  K
Sbjct: 283 SLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVK 342

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD V  + LI     AGK++AA     E    G    + +Y++L+        + + 
Sbjct: 343 GIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEM 402

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           + +++ ++S    P + T N L+          +   V  +MK  G  P   TY  L+ +
Sbjct: 403 MAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISS 462

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
             R    ++ + +  +  E G+ P++  +  ++   +R  R+E+A  L
Sbjct: 463 YSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 510



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 187/432 (43%), Gaps = 10/432 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G + + + L ++ME KG+      Y      + ++ K       + ++
Sbjct: 315 TYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEM 374

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V N   P L T+N L+ +            V   ++ AG   D   + TL+    ++G  
Sbjct: 375 VRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLD 434

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
             +  VF EM  AG  P   TY +LI   ++ G    A   Y  M    + PD   +NA+
Sbjct: 435 SEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAV 494

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           ++A  + G  ++A  + AEM  E     PD  +  +L+ A ANA ++D+ + +   I+  
Sbjct: 495 LSALARGGRWEQAEKLFAEM--EERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSE 552

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            I+    +    +   S+  +   A   + ++ +K    D   L+A++   G    V   
Sbjct: 553 RIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKV 612

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            +IL   K   I++   +Y+SLM   S   + +K   +   +KS  ++P   + N +I A
Sbjct: 613 EKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYA 672

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
                Q+ +   + S+MK  GL P+ +TY+I + +       E  + L+      G  PN
Sbjct: 673 YGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPN 732

Query: 444 LVMFKCII-GMC 454
              +  I+ G C
Sbjct: 733 ERTYNSIVEGYC 744



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 157/333 (47%), Gaps = 7/333 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSGKVDA 145
            P + T+N+++ V   SK +    +V+ LV   +E G+  D   Y TLI+ C +      
Sbjct: 204 QPAIVTYNVVLHVY--SKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKE 261

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             +VF EM  +G EP+  T+ +L+D   KA +  +A      M      P  V +N+LI+
Sbjct: 262 AAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLIS 321

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           +  + G +++A  +  EM  EV  + PD +T   L+     AG++D A   Y  + +   
Sbjct: 322 SYVKDGLLEQAVALKQEM--EVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGC 379

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     Y   I      G +    +V+D++   G +PD V  + L+   G  G       
Sbjct: 380 KPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSG 439

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + +E K  G      +Y SL+ + S    +  A+++Y+ M    + P VST NA+++AL 
Sbjct: 440 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALA 499

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            G +  +  ++ ++M+     P+  +YS LL A
Sbjct: 500 RGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHA 532



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/347 (19%), Positives = 156/347 (44%), Gaps = 33/347 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L++V   +        V + +++AG   +   Y +LI++ ++ G  D   ++
Sbjct: 416 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQI 475

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M+ AGI P+V TY A++   A+ G+  +A   +  M  ++ KPD   +++L+ A   
Sbjct: 476 YKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYAN 535

Query: 210 SGAVDR----AFDVLAE--------------MNAEVHPVDP---------------DHIT 236
           +  +D+    + D+ +E              +N++V+ +                 D   
Sbjct: 536 AKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDINV 595

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           + A++        V +  ++  ++ +  I  +   Y   ++  S+ GD E   ++  ++ 
Sbjct: 596 LNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIK 655

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
             GV PD    + +I   G  G+++ A  +  E K  G+   +++Y+  + +  +   ++
Sbjct: 656 SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFE 715

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +A+EL  +M +   KP   T N+++   C   +L      +S++  L
Sbjct: 716 EAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQL 762


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 130/517 (25%), Positives = 228/517 (44%), Gaps = 49/517 (9%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G+  +   ++ +M   G +     Y      +C + + ++ AF  FK +      P + T
Sbjct: 468 GKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASR-VENAFFLFKEMKGTGVVPDVYT 526

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + +L+   + +   + A   L  +   G +     YTTLI    K+ KV    E+F  M+
Sbjct: 527 YTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMI 586

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS--------------KNV--KPDRV 198
             G  PNV TY ALIDG  K+G + KA   Y  MR                NV  KP+ V
Sbjct: 587 AKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVV 646

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY- 257
            + AL+    ++  V  A D+L  M   V   +P+ I   AL+     A ++D A+EV+ 
Sbjct: 647 TYGALVDGLCKAHKVKDARDLLETMF--VDGCEPNTIVYDALIDGFCKAAKLDEAQEVFH 704

Query: 258 KMI-HKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           KM+ H YN    P VYT +  I+   +    +    V   M +    P+ V  + +ID  
Sbjct: 705 KMVEHGYN----PNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGL 760

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               K + A++++   + +G    +++Y++++     A    K LEL+  M S    P  
Sbjct: 761 SKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNF 820

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T   LI   C    L +   +L +MK      +  +Y  ++   +R+  + +G  LL +
Sbjct: 821 VTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLG--LLEE 878

Query: 435 AKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492
            +++G  P ++++K +I    +  R E A  L++ V+S +      +N +TSL       
Sbjct: 879 VEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSL------- 931

Query: 493 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLG 529
                 I +    SK+    +L Y+  IR+ ++ +LG
Sbjct: 932 ------IYSFSYASKIGHAFELFYDM-IRDGVIPDLG 961



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 130/592 (21%), Positives = 237/592 (40%), Gaps = 52/592 (8%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           + + ++  C  +L  M  +G      ++++     CKS      A++  K +      P 
Sbjct: 354 LNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDD-FSYAYKLLKKMEKCECKPG 412

Query: 92  LSTFNMLMSVCASSKDSEG--AFQVLRLVQEAGLKADCKLYTTLITTCAKS----GKVDA 145
              +N+L+    S  +  G   F++        L A   L    + + A+     GK + 
Sbjct: 413 YVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEK 472

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            ++V HEM+  G  P+  TY  +I     A +V  AF  +  M+   V PD   +  LI 
Sbjct: 473 AYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILID 532

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              ++G + +A + L EM  +    +P  +T   L+ A   A +V  A E+++++     
Sbjct: 533 CFSKAGIIKQAHNWLDEMVRD--GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGC 590

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 YT  I+   ++G+ E AC +Y  M     IPD                V+  F+
Sbjct: 591 FPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD----------------VDMYFK 634

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           I     N      +++Y +L+     A   + A +L E M     +P     +ALI   C
Sbjct: 635 I---KNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFC 691

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              +L +  EV   M   G  PN  TYS L+    +   +++ L +LS+  E+   PN+V
Sbjct: 692 KAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIV 751

Query: 446 MFKCIIGMCSRRYEKARTLNEHVLSFNSG-RPQIENKWTSL------------ALMVYRE 492
           ++  +I   S+  +        ++    G +P +   +T++             L ++RE
Sbjct: 752 IYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVT-YTAMIDGFGKAGKVDKCLELFRE 810

Query: 493 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP 552
               G  P     + ++       + D    L+E +  +      S+ C +I+G+     
Sbjct: 811 MGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFI 870

Query: 553 RAFSLLEEAASFGIVPCVSFKEIPV--VVDARKLEI----HTAKVSLSFQHA 598
            +  LLEE    G  P +   ++ +   V A +LE+    H   +S S   A
Sbjct: 871 LSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMA 922



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 153/342 (44%), Gaps = 10/342 (2%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           + L L+++     +  LY  +I+   ++   +   +  + M +    PNV TY  L+ GC
Sbjct: 294 EALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGC 353

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
               Q+ +      +M ++   P   +FN+L+ A  +S     A+ +L +M  E     P
Sbjct: 354 LNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKM--EKCECKP 411

Query: 233 DHITIGALMKACANAGQV------DRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDW 285
            ++    L+ +  + G++      + A + Y +M+    +     V + A  C    G +
Sbjct: 412 GYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFA-RCLCGFGKF 470

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           E A  V  +M   G +PD    S +I F  +A +VE AF + +E K  G+   + +Y+ L
Sbjct: 471 EKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTIL 530

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +   S A   ++A    + M     +PTV T   LI A     ++    E+   M + G 
Sbjct: 531 IDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGC 590

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            PN ITY+ L+    +  ++E    + ++ + D  IP++ M+
Sbjct: 591 FPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMY 632



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 148/355 (41%), Gaps = 44/355 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L +  ++ +  DLLE M   G      VY A     CK+ K  +    F K+V    NP 
Sbjct: 655 LCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPN 714

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ L+      K  +   +VL  + E     +  +YT +I   +K  K D  +++  
Sbjct: 715 VYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLML 774

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G +PNV TY A+IDG  KAG+V K    +  M SK   P+ V +  LI  C  +G
Sbjct: 775 MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATG 834

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +D A+ +L EM        P H++       C             K+I  Y        
Sbjct: 835 HLDEAYALLEEMKQTYW---PKHVS-----SYC-------------KVIEGYK------- 866

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
                       ++  +  + +++ K G  P  +    LID    AG++E A E+ +E  
Sbjct: 867 -----------REFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVI 915

Query: 332 NQGISVGIIS--YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +  +S+      Y+SL+ + S A     A EL+  M    + P + T   L+  L
Sbjct: 916 SASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMGL 970



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 113/528 (21%), Positives = 215/528 (40%), Gaps = 58/528 (10%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
            VPN  L  +N ++S    +   E A   L  ++      + + Y  L+  C    ++  
Sbjct: 304 FVPNTIL--YNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGR 361

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              +   M+  G  P+   + +L+    K+   + A+     M     KP  VV+N LI 
Sbjct: 362 CKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIG 421

Query: 206 ACGQSGAV---------DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           +    G +         ++A++ +      ++ V+     + +  +     G+ ++A   
Sbjct: 422 SICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVN-----VVSFARCLCGFGKFEKA--- 473

Query: 257 YKMIHKYNIKG-TPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           YK+IH+    G  P+   Y+  I         E A  ++ +M   GV+PD    + LID 
Sbjct: 474 YKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDC 533

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG ++ A   L E    G    +++Y++L+ A   AK    A EL+E M +    P 
Sbjct: 534 FSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN 593

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMK----------------SLGLCPNTITYSILLV 417
           V T  ALI   C    + K  ++ + M+                ++   PN +TY  L+ 
Sbjct: 594 VITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVD 653

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL---------NE 466
              +   V+    LL     DG  PN +++  +I G C + + ++A+ +         N 
Sbjct: 654 GLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNP 713

Query: 467 HVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL- 524
           +V +++S   ++ ++K   L L V  + +     P + + ++++  L      D   +L 
Sbjct: 714 NVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLM 773

Query: 525 --VENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 568
             +E  G   + +  +   ++IDGFG+     +   L  E  S G  P
Sbjct: 774 LMMEEKGCKPNVVTYT---AMIDGFGKAGKVDKCLELFREMGSKGCAP 818



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/366 (20%), Positives = 156/366 (42%), Gaps = 17/366 (4%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
            N+L+  C  +     A + L  +++ G K     Y  L+    ++ K+D    V  EM 
Sbjct: 209 LNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMS 268

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+  +  T G       K G+  +A     ++  ++  P+ +++N +I+   ++   +
Sbjct: 269 ELGLSMDEFTLGFFAQALCKVGKWREALS---LIEKEDFVPNTILYNKMISGLCEASFFE 325

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A D L  M +      P+  T   L+  C N  Q+ R + +  M+       +  ++  
Sbjct: 326 EAMDFLNRMRST--SCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNS 383

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA--AFEILQEAKN 332
            ++   ++ D+ +A  +   M K    P  V  + LI      G++     FE+ ++A N
Sbjct: 384 LVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYN 443

Query: 333 QGISVG-------IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + +S G       ++S++  +  C   K ++KA ++   M      P  ST + +I  LC
Sbjct: 444 EMLSAGTVLNKVNVVSFARCL--CGFGK-FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLC 500

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           +  ++     +  +MK  G+ P+  TY+IL+    +   ++     L +   DG  P +V
Sbjct: 501 NASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVV 560

Query: 446 MFKCII 451
            +  +I
Sbjct: 561 TYTTLI 566



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 9/250 (3%)

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           + G+ DR   V  E   E+   D + +   +  L++ C   G  + A E    +  +  K
Sbjct: 182 ERGSYDR---VPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYK 238

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            T   Y   +    +    + A  V+ +M++ G+  DE  L          GK   A  +
Sbjct: 239 PTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSL 298

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +++   +      I Y+ ++     A  +++A++    M+S    P V T   L+    +
Sbjct: 299 IEK---EDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLN 355

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             QL +   +LS M + G  P+   ++ L+ A  + DD      LL + ++    P  V+
Sbjct: 356 KKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVV 415

Query: 447 FKCIIG-MCS 455
           +  +IG +CS
Sbjct: 416 YNILIGSICS 425



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 4/151 (2%)

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           AL+D            E L+E +     V     + L+  C     W  ALE    +K  
Sbjct: 176 ALLDVFERGSYDRVPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDF 235

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
             KPT  T NAL+      D+L     V  +M  LGL  +  T      A  +       
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREA 295

Query: 429 LMLLSQAKEDGVIPNLVMF-KCIIGMCSRRY 458
           L L+   KED  +PN +++ K I G+C   +
Sbjct: 296 LSLIE--KED-FVPNTILYNKMISGLCEASF 323


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 192/424 (45%), Gaps = 46/424 (10%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTF 95
           + R+ E    LE+M  + L      Y      +CK  +  +      K+     PT  T+
Sbjct: 59  ENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTY 118

Query: 96  NMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           N L+S +C + + SE A+ +L  +  +G   D   YTTLIT   KS K D    VF ++V
Sbjct: 119 NSLISGLCKAERASE-AYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 177

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM-RSKNVKPDRVVFNALITACGQSGAV 213
             G  P+V TY  LIDG  K G++ +A   +G M +S +  P+ V +N+LI+   + G +
Sbjct: 178 ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM 237

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A ++L  M AE     PD +T   LM       ++D A   Y ++++           
Sbjct: 238 DEAMNLLERM-AETGS-SPDVVTYTTLMNGFCKLARLDDA---YDLLNQ----------- 281

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
                                MT+KG+ PD V  ++L+D      ++  A  IL E + +
Sbjct: 282 ---------------------MTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK 320

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
             S  + +Y++++     A   ++A +    ++ +   P V + N +I  LC  ++  + 
Sbjct: 321 SCSPTVYTYNTILDGYCRANQLEEARKF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEA 378

Query: 394 MEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
           ME++ + +     P+ + Y+ ++   C  K   E   +     +E G +PN + +  +I 
Sbjct: 379 MELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLIT 438

Query: 452 GMCS 455
           G+C+
Sbjct: 439 GLCN 442



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 156/363 (42%), Gaps = 7/363 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+  L+      K  E A   L  +   G   D   YT +I       ++    +   EM
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            N  + PNV TY  LIDG  K G+V +A      MR K V P  V +N+LI+   ++   
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERA 131

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A+D+L EM        PD  T   L+     + + D A  V++ +     +     Y+
Sbjct: 132 SEAYDLLEEM--VYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
             I+   + G  + A  ++  M K G  +P+ V  ++LI      GK++ A  +L+    
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE 249

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G S  +++Y++LM           A +L   M    L P V T  +L+  LC  ++L  
Sbjct: 250 TGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSD 309

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
            + +L +M+     P   TY+ +L    R + +E     + +  E    PN+V F  +I 
Sbjct: 310 AVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLE--EMDCPPNVVSFNIMIR 367

Query: 452 GMC 454
           G+C
Sbjct: 368 GLC 370



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 167/369 (45%), Gaps = 19/369 (5%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           +V      AD   YT+LI    K  +++       +MV+ G  P+V+TY A+I       
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           ++ +A      M ++N+ P+ V +  LI    + G VD A  +L++M  +  P     +T
Sbjct: 61  RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPT---AVT 117

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYD 293
             +L+     A   +RA E Y ++ +    G  P++  YT  I    ++   + A  V++
Sbjct: 118 YNSLISGLCKA---ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFE 174

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNA 352
            +  +G  PD V  S LID     G+++ A ++       G  +   ++Y+SL+      
Sbjct: 175 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 234

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
               +A+ L E M      P V T   L+   C   +L    ++L+ M   GL P+ +T+
Sbjct: 235 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTF 294

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKART--LNE-- 466
           + L+    R++ +   + +L + +     P +  +  I+ G C + + E+AR   L E  
Sbjct: 295 TSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD 354

Query: 467 ---HVLSFN 472
              +V+SFN
Sbjct: 355 CPPNVVSFN 363



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 185/403 (45%), Gaps = 14/403 (3%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFF-KLVP---NPTLSTFNMLM-SVCASSKDSEGAFQVLR 116
            Y +    +CK ++ +++A  F  K+V    +P + T+  ++ ++C  ++  E A + L 
Sbjct: 13  TYTSLIQGLCKVKR-LEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE-ARKFLE 70

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
            +    L  +   YT LI    K G+VD    +  +M    + P   TY +LI G  KA 
Sbjct: 71  EMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAE 129

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           + ++A+     M      PD   +  LIT   +S   D A  V  ++ A      PD +T
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA--RGFRPDVVT 187

Query: 237 IGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
              L+      G++  A +++ +MI   +       Y   I+   + G  + A ++ + M
Sbjct: 188 YSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERM 247

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            + G  PD V  + L++      +++ A+++L +   +G++  +++++SLM         
Sbjct: 248 AETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRL 307

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             A+ +   M+     PTV T N ++   C  +QL +  + +  ++ +   PN ++++I+
Sbjct: 308 SDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIM 365

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
           +    + +     + L+ +A+     P++VM+  +I G+C  +
Sbjct: 366 IRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREK 408



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 160/385 (41%), Gaps = 19/385 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-K 85
           +YN LI    +  R SE  DLLE+M   G +     Y       CKS+K+  +A R F +
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS-DDALRVFEQ 175

Query: 86  LVP---NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           LV     P + T++ L+  +C   +  E      R+++      +   Y +LI+   + G
Sbjct: 176 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 235

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+D    +   M   G  P+V TY  L++G  K  ++  A+     M  K + PD V F 
Sbjct: 236 KMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFT 295

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +L+    +   +  A  +L EM  +     P   T   ++     A Q++ AR+   M+ 
Sbjct: 296 SLMDGLCRENRLSDAVHILGEMRRK--SCSPTVYTYNTILDGYCRANQLEEARKF--MLE 351

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           + +       + I I    +      A  + ++  ++   PD V  + +ID      KV+
Sbjct: 352 EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVD 411

Query: 322 AAFEILQEA-KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            A  + ++  +  G     I+YS+L+    NA    +A    E        P + T N L
Sbjct: 412 EACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYIEK----GCVPNIGTYNLL 467

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGL 405
           I A    ++     E+L DM   G 
Sbjct: 468 IDAFRKANRDEDARELLDDMVQRGF 492



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 26/253 (10%)

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           S   ++Y+SL+      K  ++AL     M S    P V T  A+I ALC  ++L +  +
Sbjct: 8   SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            L +M +  L PN +TY++L+    +   V+  + LLS+ ++   +P  V +  +I G+C
Sbjct: 68  FLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLC 126

Query: 455 -SRRYEKARTLNEHVLSFNSGRPQI-----------ENKWTSLALMVYREAIVAGTIPTV 502
            + R  +A  L E ++ ++   P I           ++K +  AL V+ + +  G  P V
Sbjct: 127 KAERASEAYDLLEEMV-YSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 503 EVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAF 555
              S ++  L    +L    D+  R++++     + +  +   SLI GF   G+ D  A 
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYN---SLISGFCRMGKMD-EAM 241

Query: 556 SLLEEAASFGIVP 568
           +LLE  A  G  P
Sbjct: 242 NLLERMAETGSSP 254


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 156/349 (44%), Gaps = 2/349 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P++ TF  L+  C    D   A ++   ++  G+     +YT LI       K++    
Sbjct: 179 SPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAES 238

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M   G+ PNV+TY  L+DG  K     +A   Y  M  + + PD V F  LI    
Sbjct: 239 MHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLC 298

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  A ++   M      V P+     +L+ A    G V  A  ++  + ++ +   
Sbjct: 299 KFGEMKAARNLFVNMIK--FSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPD 356

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+I I         E A ++++ MTK+G++ + V  ++LID     GK++ A EI  
Sbjct: 357 VFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICS 416

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +    G+   +I++S+L+      +N Q A+ +Y  M    L P V T  A+I   C   
Sbjct: 417 QMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYG 476

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
            + + +++ SDM   G+ PN  T S LL    +   +   L L ++  E
Sbjct: 477 SMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIE 525



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 203/481 (42%), Gaps = 53/481 (11%)

Query: 12  PYPNGKHANYAHDVSEQLHS--YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN 69
           P+   +  N A + + QL+S   + L+    +S    LL D+  + L+   K YHA    
Sbjct: 43  PWKALEFFNAAPEKNIQLYSAIIHVLVGSKLLSHARYLLNDL-VQNLVKSHKPYHA---- 97

Query: 70  VCKSQKAIKEAFRF--FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
               Q A  E  R    K  PN     +  L+ V    +  E A   L +  + G     
Sbjct: 98  ---CQLAFSELSRLKSSKFTPN----VYGELIIVLCKMELVEEA---LSMYHKVGAALTI 147

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
           +    L+    K+G+ + ++ ++ EM++ G+ P+V T+G LIDGC + G + +A   +  
Sbjct: 148 QACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDE 207

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN-AEVHP----------------- 229
           MR K + P  +V+  LI        ++ A  +   M    V+P                 
Sbjct: 208 MRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLAN 267

Query: 230 ---------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
                          + PD +T G L+      G++  AR ++  + K+++     VY  
Sbjct: 268 AKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNS 327

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   + GD   A +++ ++ +  V PD    S LI       + E A  I ++   +G
Sbjct: 328 LIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEG 387

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I    ++Y+SL+  C       KALE+   M    ++P V T + LI   C    L   M
Sbjct: 388 ILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAM 447

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
            + S+M    L P+ +TY+ ++    +   ++  L L S   ++G+ PN     C++ G+
Sbjct: 448 GIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGL 507

Query: 454 C 454
           C
Sbjct: 508 C 508



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 193/429 (44%), Gaps = 32/429 (7%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFRFFKLVPNPT 91
           RQG +    ++ ++M  KG++    VY      +C   K     ++  A R   + PN  
Sbjct: 194 RQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPN-- 251

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCAKSGKVDAMFE 148
           + T+N LM       +++   Q LRL Q+    GL  D   +  LI    K G++ A   
Sbjct: 252 VYTYNTLMDGYCKLANAK---QALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARN 308

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  M+   + PN+  Y +LID   K G V++A   +  +    V PD   ++ LI    
Sbjct: 309 LFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLC 368

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                + A ++  +M  E   +  + +T  +L+  C   G++D+A E+   + +  ++  
Sbjct: 369 SVSRTEEAGNIFEKMTKE--GILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPN 426

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              ++  I+   +  + + A  +Y +M  K + PD V  +A+ID     G ++ A ++  
Sbjct: 427 VITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYS 486

Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKL----------KPTVST- 376
           +  + GI+    + S L+ G C + K    ALEL+      +           KP+++  
Sbjct: 487 DMLDNGITPNCYTISCLLDGLCKDGK-ISDALELFTEKIEFQTPRCNVDAGGSKPSLTNH 545

Query: 377 --MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
               ALI  LC   Q  K +++ SDM+  GL P+ + Y ++L    +     + +ML + 
Sbjct: 546 VAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVK--YILMMLHAD 603

Query: 435 AKEDGVIPN 443
             + GVIPN
Sbjct: 604 MLKFGVIPN 612



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 125/307 (40%), Gaps = 33/307 (10%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +VS  + +Y+ LIR      R  E  ++ E M ++G+L     Y++     CK  K  K 
Sbjct: 352 EVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKA 411

Query: 80  AFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
                ++  N   P + TF+ L+      ++ + A  +   +    L  D   YT +I  
Sbjct: 412 LEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDG 471

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G +    +++ +M++ GI PN +T   L+DG  K G+++ A   +          +
Sbjct: 472 HCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELF---------TE 522

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           ++ F          G+                P   +H+   AL+      GQ  +A ++
Sbjct: 523 KIEFQTPRCNVDAGGS---------------KPSLTNHVAYTALIHGLCQDGQFSKAVKL 567

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  + +Y ++    +Y + +    Q         ++ DM K GVIP+      L +    
Sbjct: 568 FSDMRRYGLQPDEVIYVVMLRGLFQVK--YILMMLHADMLKFGVIPNSAVHVILCECYQE 625

Query: 317 AGKVEAA 323
           +G +++A
Sbjct: 626 SGFLKSA 632


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 192/433 (44%), Gaps = 45/433 (10%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    ++Y  LIR    +GR+ + + LL+DM R+                C+        
Sbjct: 133 VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRE---------------CQ-------- 169

Query: 81  FRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                    P++ T+ +L+ +VC SS   + A +VL  ++  G   +   Y  +I    +
Sbjct: 170 ---------PSVVTYTVLLEAVCKSSGFGQ-AMKVLDEMRAKGCTPNIVTYNVIINGMCR 219

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
             +VD   ++ + + + G +P+  +Y  ++ G   A +       +  M   N  P+ V 
Sbjct: 220 EDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVT 279

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           F+ L+    + G V+RA +VL  M+   H    +      ++ +    G+VD A E    
Sbjct: 280 FDMLVRFFCRGGMVERAIEVLDRMSE--HGCTANTTLCNIVINSICKQGRVDDAFEFLNN 337

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +  Y        YT  +    + G WE A  + ++M +K   P+EV  +  I      G 
Sbjct: 338 MGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGL 397

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A  ++++    G SVGI++Y++L+           ALEL+    S+  +P   T   
Sbjct: 398 IDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELF---NSLPCEPNTITYTT 454

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438
           L+T LC  ++L    E+L++M     CP N +T+++L+    +K  VE  + L+ Q  E 
Sbjct: 455 LLTGLCHAERLDAAAELLAEMMQ-NDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEH 513

Query: 439 GVIPNLVMFKCII 451
           G  PNL+ F  ++
Sbjct: 514 GCTPNLITFNTLL 526



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 191/442 (43%), Gaps = 33/442 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+ R+ +   +L  +   G       Y      +C +++       F ++V N   
Sbjct: 215 NGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCV 274

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TF+ML+         E A +VL  + E G  A+  L   +I +  K G+VD  FE 
Sbjct: 275 PNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEF 334

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M + G  P+  +Y  ++ G  +AG+   A      M  KN  P+ V FN  I    Q
Sbjct: 335 LNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQ 394

Query: 210 SGAVDRAFDVLAEM------------NAEVH------------------PVDPDHITIGA 239
            G +D+A  ++ +M            NA V+                  P +P+ IT   
Sbjct: 395 KGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTITYTT 454

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+    +A ++D A E+   + + +       + + ++   Q G  E A  +   M + G
Sbjct: 455 LLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHG 514

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
             P+ +  + L+D        E A E+L    ++GIS+  I+YSS++   S     ++A+
Sbjct: 515 CTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIEEAV 574

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           +++  ++ + ++P     N +++ALC   +  + ++  + M S    PN  TY IL+   
Sbjct: 575 QMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILIEGL 634

Query: 420 ERKDDVEVGLMLLSQAKEDGVI 441
            R+  ++    +LS+    GV+
Sbjct: 635 AREGLLKEARYVLSELCSRGVL 656



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 155/368 (42%), Gaps = 8/368 (2%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P+  L T  ++ ++C   + S+ A +VLR  + +G   D   Y TL+    + G++DA  
Sbjct: 68  PDVYLCT-KLIRNLCRRGRTSDAA-RVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAAR 125

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +   M    + P+ +TY  LI G    G+V  A      M  +  +P  V +  L+ A 
Sbjct: 126 RLIASM---PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAV 182

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +S    +A  VL EM A+     P+ +T   ++       +VD AR++   +  Y  + 
Sbjct: 183 CKSSGFGQAMKVLDEMRAK--GCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQP 240

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  +        WE    ++ +M +   +P+EV    L+ F    G VE A E+L
Sbjct: 241 DTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVL 300

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                 G +      + ++ +         A E   +M S    P   +   ++  LC  
Sbjct: 301 DRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRA 360

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +     E+L++M      PN +T++  +    +K  ++  ++L+ Q  E G    +V +
Sbjct: 361 GRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTY 420

Query: 448 KCII-GMC 454
             ++ G C
Sbjct: 421 NALVNGFC 428



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 149/349 (42%), Gaps = 9/349 (2%)

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G  P+V+    LI    + G+ + A              D   +N L+    + G +D A
Sbjct: 65  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAA 124

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             ++A M     PV PD  T   L++   + G+V  A  +   + +   + +   YT+ +
Sbjct: 125 RRLIASM-----PVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLL 179

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
               ++  +  A  V D+M  KG  P+ V  + +I+      +V+ A +IL    + G  
Sbjct: 180 EAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQ 239

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
              +SY++++     AK W+    L+  M      P   T + L+   C G  + + +EV
Sbjct: 240 PDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEV 299

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC- 454
           L  M   G   NT   +I++ +  ++  V+     L+     G  P+ + +  ++ G+C 
Sbjct: 300 LDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCR 359

Query: 455 SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503
           + R+E A+ L   ++  N   P  E  + +   ++ ++ ++   I  +E
Sbjct: 360 AGRWEDAKELLNEMVRKNC--PPNEVTFNTFICILCQKGLIDQAILLIE 406


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 187/443 (42%), Gaps = 42/443 (9%)

Query: 53  RKGLLDMDKVYHARFFNVCKSQKAIKEA----FR-FFKLVPNPTLSTFNMLMSVCASSKD 107
           R+G+    +  +A    + +S   + +A    FR   +L  +P   TFN+L+    S   
Sbjct: 164 RRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGT 223

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
              A   L  +Q  GL  D   Y TL+    + G +     +   M   GI P   TY  
Sbjct: 224 LADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNT 283

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+   A+ G + +A      M +   +PD   +N L     Q+G VD AF +  EM   +
Sbjct: 284 LVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEME-RL 342

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
               PD +T   L+ AC        A  + + +    +K T   + I +    + G  E 
Sbjct: 343 STALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEE 402

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-------- 339
           A    + + ++G+ PD +  + LID    AG V  AF ++ E   +G+ +          
Sbjct: 403 ALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLY 462

Query: 340 ---------------------------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                                      +SY ++M A     N + AL L++ M   KL P
Sbjct: 463 NLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIP 522

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           ++ST N LI  LC  ++L + ++ L+++   GL P+  TY+I++ A  ++ D+E      
Sbjct: 523 SISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFH 582

Query: 433 SQAKEDGVIPNLVMFKCII-GMC 454
           ++  E+   P++V    ++ G+C
Sbjct: 583 NKMVENSFKPDVVTCNTLMNGLC 605



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 204/476 (42%), Gaps = 25/476 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G I +   ++E M   G     + Y+     +C++ K + EAFR    
Sbjct: 280 TYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGK-VDEAFRLKDE 338

Query: 87  VPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +       P + T+N L+  C   + S  A ++L  +++ G+K     +  ++ +  K G
Sbjct: 339 MERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEG 398

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K++       ++   G+ P+V TY  LID   KAG VAKAF     M  K +K D    N
Sbjct: 399 KLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLN 458

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            ++    +    + A ++L   +       PD ++ G +M A       + A  ++  + 
Sbjct: 459 TVLYNLCKMKRYEDAEELL--HSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMI 516

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +  +   Y   I    +    + A    +++ +KG++PDE   + +I      G +E
Sbjct: 517 ERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLE 576

Query: 322 AAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            AF    +         +++ ++LM G C + K   KAL+L+E       K  V T N L
Sbjct: 577 NAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGK-LDKALKLFESWVEKGKKVDVITYNTL 635

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I ++C    +   +    DM+  GL P+  TY+++L A       E    +L +  + G 
Sbjct: 636 IQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGK 695

Query: 441 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN--KWTSLALMVYREAI 494
           +     F C +        K  + +E  +  + G+P+ E+  K    AL  Y E +
Sbjct: 696 LSQ--SFACPL-------LKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERL 742



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 331 KNQGISVGIISYSSLMGACSNAKNW--QKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + +G+   + + ++++ A S + +   Q +L+++  +  ++L P   T N L+   C   
Sbjct: 163 RRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKG 222

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L   +  LS M+  GL P+ +TY+ LL A  RK  +     LL++ K DG+ P    + 
Sbjct: 223 TLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYN 282

Query: 449 CIIGMCSR 456
            ++   +R
Sbjct: 283 TLVSAFAR 290


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 168/371 (45%), Gaps = 14/371 (3%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           ++  +CAS + ++      R++  +G   D  +Y  ++     +G++DA   +  +M   
Sbjct: 110 LIKKLCASGRTADAR----RVLAASG--PDVMVYNAMVAGYCGAGQLDAARRLVADM--- 160

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
            +EP+ +TY  LI G    G+ + A      M  +   PD V +  L+ A  +     +A
Sbjct: 161 PVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQA 220

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             +L EM+ +     PD +T   ++      G+V+ A E  K +  Y  +     Y I +
Sbjct: 221 MKLLDEMHDK--GCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVL 278

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
                   WE A  + ++M  KG  P+ V  + LI F    G VE A E+L++    G +
Sbjct: 279 KGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCT 338

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
              +SY+ L+ A    K   KA+E  E M S    P + + N L+TALC   ++   +E+
Sbjct: 339 PNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIEL 398

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC- 454
           L  +K  G  P  I+Y+ ++    +    +  L LL +    G+ P+++ +  I  G+C 
Sbjct: 399 LHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCR 458

Query: 455 -SRRYEKARTL 464
             R  E  RT 
Sbjct: 459 EDRIEEAVRTF 469



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/433 (22%), Positives = 183/433 (42%), Gaps = 38/433 (8%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    ++YN LIR    +GR S  + +LEDM R+G L                       
Sbjct: 162 VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCL----------------------- 198

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P + T+ +L+         + A ++L  + + G   D   Y  ++    + 
Sbjct: 199 ---------PDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQE 249

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+V+   E    + + G EPN  +Y  ++ G   A +   A      M  K   P+ V F
Sbjct: 250 GRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTF 309

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N LI+   + G V+ A +VL +M    +   P+ ++   L+ A     ++ +A E  +++
Sbjct: 310 NMLISFLCRRGLVEPAMEVLEQMPQ--YGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELM 367

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                      Y   +    + G+ + A  +   +  KG  P  +  + +ID    AGK 
Sbjct: 368 VSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKT 427

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A E+L E  ++G+   II+YS++          ++A+  +  ++ + ++PT +  NA+
Sbjct: 428 KEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAI 487

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +  LC   +    +++ + M S G  PN  TY+IL+     +  V+    L +Q    GV
Sbjct: 488 LLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRGV 547

Query: 441 IPNLVMFKCIIGM 453
           +   +M K  I M
Sbjct: 548 VNKKLMKKGSIKM 560



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 178/392 (45%), Gaps = 6/392 (1%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           VY+A     C + + +  A R    +P  P   T+N L+        +  A  VL  +  
Sbjct: 136 VYNAMVAGYCGAGQ-LDAARRLVADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFR 194

Query: 121 AGLKADCKLYTTLI-TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
            G   D   YT L+  TC +SG   AM ++  EM + G  P++ TY  +++G  + G+V 
Sbjct: 195 RGCLPDVVTYTILLEATCKRSGYKQAM-KLLDEMHDKGCAPDIVTYNVVLNGICQEGRVE 253

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            A      + S   +P+ V +N ++     +   + A  ++ EM  +  P  P+ +T   
Sbjct: 254 DAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCP--PNVVTFNM 311

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+      G V+ A EV + + +Y        Y   ++   +      A    + M  +G
Sbjct: 312 LISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRG 371

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
             PD V  + L+      G+V+ A E+L + K++G S  +ISY++++   + A   ++AL
Sbjct: 372 CYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEAL 431

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           EL + M S  L+P + T + + + LC  D++ + +     ++ +G+ P    Y+ +L+  
Sbjct: 432 ELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGL 491

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            ++ +    + L +     G +PN   +  ++
Sbjct: 492 CKRRETHNAIDLFAYMISSGCMPNESTYTILV 523


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 193/430 (44%), Gaps = 13/430 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    R G+    I+++EDM R  +      Y+    N C +    K+A    K +
Sbjct: 49  YNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYN-NVINACGAAGNWKKALELCKKM 107

Query: 88  P----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P L T N+++S   +      A     +++ A + +D      +I    K G+ 
Sbjct: 108 TENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQC 167

Query: 144 DAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
               E+F+ M     +  P+V TY +++      GQV      + +M ++ VKP+ V +N
Sbjct: 168 GEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYN 227

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +L+ A    G    A  +   +    + + PD ++  +L+ A   + Q ++AREV+  + 
Sbjct: 228 SLLGAYASRGMHREALAIFNLIKK--NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMK 285

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K + K     Y   I+     G  + A  +  +M K G+ PD V +S L+   G   ++ 
Sbjct: 286 KNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQIT 345

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
               IL+ A+++GI +  ++Y+S + +  +  +++KALELY  M+   +KP   T N LI
Sbjct: 346 RIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILI 405

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           +      +  +++    DM    +      YS L+ +  ++  +       S  K+ G  
Sbjct: 406 SGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCF 465

Query: 442 PNLVMFKCII 451
           P+++ +  +I
Sbjct: 466 PDVLTYTTLI 475



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 117/516 (22%), Positives = 212/516 (41%), Gaps = 83/516 (16%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----N 89
           L++ G+  E I+L   M ER+     D V +    +       ++     F L+      
Sbjct: 161 LVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVK 220

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +N L+   AS      A  +  L+++ GL+ D   YT+L+    +S + +   EV
Sbjct: 221 PNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREV 280

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F++M     +PN  +Y ALID    AG + +A G    M    ++PD V  + L+ ACG+
Sbjct: 281 FNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGR 340

Query: 210 SGAVDRAFDVLA---------------------------EMNAEVHP------VDPDHIT 236
              + R   +L                            E   E++       V PD +T
Sbjct: 341 CRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVT 400

Query: 237 IGALMKACANAGQ---------------VDRAREVYK-MIHKYNIKGT------------ 268
              L+   +  G+               V   +EVY  +I+ Y  +G             
Sbjct: 401 YNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMK 460

Query: 269 -----PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                P+V  YT  I   +  G W+ A  ++ +M   G+ PD +  S+L++     G+ E
Sbjct: 461 KSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPE 520

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
              ++++  K + I +   SY  ++ +C+  ++W+ A E+ E++ S     +V T+N ++
Sbjct: 521 RVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVL 580

Query: 382 TALCDGDQLPKTMEVLSDM----KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             L    +    M++   M     ++GL    +    LLV  + +  +EV    L   ++
Sbjct: 581 NFLGKCGKTENMMKLFYKMVTSCSTVGLSTYAVVLRNLLVVGKWRKYIEV----LQWMED 636

Query: 438 DGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSF 471
            GV P L MF+ ++    R    + A T+ E + S 
Sbjct: 637 SGVHPTLYMFQNVLPYIWRENGMDFAATMQEKISSL 672



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 166/377 (44%), Gaps = 12/377 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + M++ + A     + A  +   +QE   K D  +Y +LI   +++G+      +  +M+
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            A I P   TY  +I+ C  AG   KA      M    V PD V  N +++A        
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYS 133

Query: 215 RA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           +A   F+++   N     V  D  T+  ++      GQ   A E++  + +   K  P+V
Sbjct: 134 KAISYFEIMKGAN-----VTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDV 188

Query: 272 --YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  ++     G  E   +++D M  +GV P+ V  ++L+      G    A  I   
Sbjct: 189 VTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNL 248

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G+   I+SY+SL+ A   +   +KA E++  MK    KP   + NALI A      
Sbjct: 249 IKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGM 308

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L + + +L +M+  G+ P+ ++ S LL AC R   +     +L  A+  G+  N V +  
Sbjct: 309 LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNS 368

Query: 450 IIG--MCSRRYEKARTL 464
            I   +    YEKA  L
Sbjct: 369 GIKSYLSFGDYEKALEL 385



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 170/359 (47%), Gaps = 15/359 (4%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  +I   A+  +VD    +F EM     +P+   Y +LI   ++AGQ   A      M
Sbjct: 13  IYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDM 72

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               + P R  +N +I ACG +G   +A ++  +M    + V PD +T   ++ A  N  
Sbjct: 73  LRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTE--NGVGPDLVTHNIVLSALKNGA 130

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVF 306
           Q  +A   ++++   N+        I I+C  + G    A  +++ M ++     PD V 
Sbjct: 131 QYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVT 190

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            ++++      G+VE    I      +G+   I++Y+SL+GA ++    ++AL ++  +K
Sbjct: 191 YTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIK 250

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              L+P + +  +L+ A     Q  K  EV + MK     PN ++Y+ L+ A      ++
Sbjct: 251 KNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLK 310

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----RYE------KARTLNEHVLSFNSG 474
             + LL + ++DG+ P++V    ++  C R     R E      ++R ++ + +++NSG
Sbjct: 311 EAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSG 369



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 160/367 (43%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+   + +     A  ++  +  A +      Y  +I  C  +G      E+
Sbjct: 44  PDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALEL 103

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M   G+ P++ T+  ++       Q +KA   + IM+  NV  D    N +I    +
Sbjct: 104 CKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVK 163

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G    A ++   M        PD +T  ++M +    GQV+  + ++ ++    +K   
Sbjct: 164 IGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNI 223

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +   +  G    A ++++ + K G+ PD V  ++L++  G + + E A E+  +
Sbjct: 224 VAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNK 283

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K        +SY++L+ A  +A   ++A+ L   M+   ++P V +++ L+ A     Q
Sbjct: 284 MKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQ 343

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +   +L   +S G+  NT+ Y+  + +     D E  L L +  +E  V P+ V +  
Sbjct: 344 ITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNI 403

Query: 450 IIGMCSR 456
           +I   S+
Sbjct: 404 LISGSSK 410



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           ++Y + I   ++    + A  ++ +M +    PD    ++LI     AG+   A  I+++
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                I     +Y++++ AC  A NW+KALEL + M    + P + T N +++AL +G Q
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
             K +     MK   +  +T T +I++
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIII 158


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 4/380 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L T+++L++          A  VL  + + G + D     +L+       ++     + 
Sbjct: 115 NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +MV  G +P+  T+  LI G  +  + ++A      M  K  +PD V +  ++    + 
Sbjct: 175 GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKR 234

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D A  +L +M  E   ++P  +    ++ A  N   V+ A  ++  +    I+    
Sbjct: 235 GDIDLALSLLKKM--EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 292

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   I C    G W  A  +  DM ++ + P+ V  SALID     GK+  A ++  E 
Sbjct: 293 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 352

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             + I   I +YSSL+          +A  ++E M S    P V T N LI   C   ++
Sbjct: 353 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 412

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            + ME+  +M   GL  NT+TY+ L+    +  + +   ++  Q   DGV+P+++ +  +
Sbjct: 413 DEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSIL 472

Query: 451 I-GMCSR-RYEKARTLNEHV 468
           + G+C+  + E A  + E++
Sbjct: 473 LDGLCNNGKVETALVVFEYL 492



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/446 (22%), Positives = 201/446 (45%), Gaps = 9/446 (2%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKA 76
           Y  D+       N      RIS+ + L+  M   G        + + H   F   ++ +A
Sbjct: 147 YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHG-LFRHNRASEA 205

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +    R       P L T+ ++++      D + A  +L+ +++  ++    +Y T+I  
Sbjct: 206 VALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
                 V+    +F EM N GI PNV TY +LI      G+ + A      M  + + P+
Sbjct: 266 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN 325

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V F+ALI A  + G +  A  +  EM      +DPD  T  +L+       ++D A+ +
Sbjct: 326 VVTFSALIDAFVKEGKLVEAEKLYDEMIK--RSIDPDIFTYSSLINGFCMHDRLDEAKHM 383

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           ++++   +       Y   I    +    +    ++ +M+++G++ + V  + LI     
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 443

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVS 375
           A + + A  + ++  + G+   I++YS L+ G C+N K  + AL ++E+++  K++P + 
Sbjct: 444 ARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGK-VETALVVFEYLQRSKMEPDIY 502

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N +I  +C   ++    ++   +   G+ PN +TY+ ++    RK   E    L  + 
Sbjct: 503 TYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREM 562

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKA 461
           KE+G +P+   +  +I    R  +KA
Sbjct: 563 KEEGPLPDSGTYNTLIRAHLRDGDKA 588



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 197/442 (44%), Gaps = 14/442 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQK---A 76
           +S  L++Y+ LI    R+ ++S  + +L  M + G  + D V      N  C   +   A
Sbjct: 112 ISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGY-EPDIVTLNSLLNGFCHGNRISDA 170

Query: 77  IKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           +    +  ++   P   TFN L+  +   ++ SE    V R+V + G + D   Y  ++ 
Sbjct: 171 VSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVK-GCQPDLVTYGIVVN 229

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K G +D    +  +M    IEP V  Y  +ID       V  A   +  M +K ++P
Sbjct: 230 GLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + V +N+LI      G    A  +L++M      ++P+ +T  AL+ A    G++  A +
Sbjct: 290 NVVTYNSLIRCLCNYGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKLVEAEK 347

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +Y  + K +I      Y+  IN        + A  +++ M  K   P+ V  + LI    
Sbjct: 348 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 407

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            A +V+   E+ +E   +G+    ++Y++L+     A+    A  +++ M S  + P + 
Sbjct: 408 KAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIM 467

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T + L+  LC+  ++   + V   ++   + P+  TY+I++    +   VE G  L    
Sbjct: 468 TYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 527

Query: 436 KEDGVIPNLVMFKCII-GMCSR 456
              GV PN+V +  ++ G C +
Sbjct: 528 SLKGVKPNVVTYTTMMSGFCRK 549



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 176/375 (46%), Gaps = 9/375 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I   + LL+ ME +G ++   V +    +   + K + +A   F  + N   
Sbjct: 229 NGLCKRGDIDLALSLLKKME-QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N L+    +      A ++L  + E  +  +   ++ LI    K GK+    +
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ EM+   I+P++ TY +LI+G     ++ +A   + +M SK+  P+ V +N LI    
Sbjct: 348 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 407

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++  VD   ++  EM+     +  + +T   L+     A + D A+ V+K +    +   
Sbjct: 408 KAKRVDEGMELFREMSQ--RGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPD 465

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+I ++     G  E A  V++ + +  + PD    + +I+    AGKVE  +++  
Sbjct: 466 IMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 525

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 387
               +G+   +++Y+++M         ++A  L+  MK     P   T N LI A L DG
Sbjct: 526 SLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDG 585

Query: 388 DQLPKTMEVLSDMKS 402
           D+   + E++ +M+S
Sbjct: 586 DK-AASAELIREMRS 599



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 97/202 (48%), Gaps = 7/202 (3%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI+      R+ E ++L  +M ++GL+     Y        ++++       F ++
Sbjct: 398 TYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQM 457

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V +   P + T+++L+    ++   E A  V   +Q + ++ D   Y  +I    K+GKV
Sbjct: 458 VSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKV 517

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +  +++F  +   G++PNV TY  ++ G  + G   +A   +  M+ +   PD   +N L
Sbjct: 518 EDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTL 577

Query: 204 ITACGQSGAVDRAFDVLAEMNA 225
           I A  + G    + +++ EM +
Sbjct: 578 IRAHLRDGDKAASAELIREMRS 599


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 162/360 (45%), Gaps = 11/360 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+     +   + A  ++  +++ G+  D   Y+ LI     +G+ ++   V
Sbjct: 339 PRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIV 398

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM    ++PN   +  L+ G    G+  K F     M+S  VKPDR  +N +I   G+
Sbjct: 399 LKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 458

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A      M +E   ++PD +T   L+      G+   A E+++ + +       
Sbjct: 459 FNCLDHAMTTFDRMLSE--GIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCA 516

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN       W+    +   M  +G++P+ V  + L+D  G +G+   A E L+E
Sbjct: 517 TTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEE 576

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K+ G+      Y++L+ A +     ++A+  +  M S  LKP++  +N+LI A  +  +
Sbjct: 577 MKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRR 636

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             +   VL  MK  G+ P+ +TY+ L+ A  R D  +         K  GV   ++M  C
Sbjct: 637 DAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQ---------KVPGVYEEMIMSGC 687



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 184/437 (42%), Gaps = 25/437 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF----- 81
           +YN LI    R   I + ++L+  M + G       Y + F N     +++         
Sbjct: 201 TYNALIGACARNNDIEKALNLISRMRQDG-------YQSDFVNYSLVIQSLTRCNKIDSV 253

Query: 82  ---RFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
              R +K +    L       N ++   A S D   A Q+L + Q  GL A      ++I
Sbjct: 254 MLQRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSII 313

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +  A SG+      +F E+  +GI+P    Y AL+ G  K G +  A      M  + V 
Sbjct: 314 SALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVS 373

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD   ++ LI A   +G  + A  VL EM  E   V P+      L+    + G+  +  
Sbjct: 374 PDEHTYSLLIDAYVNAGRWESARIVLKEM--ETGDVQPNSFVFSRLLAGYRDRGEWQKTF 431

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           +V K +    +K   + Y + I+   +    + A + +D M  +G+ PD V  + LID  
Sbjct: 432 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 491

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G+   A E+ +  + +G      +Y+ ++ +  + + W     L   MKS  + P V
Sbjct: 492 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 551

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T   L+       +    +E L +MKS+GL P++  Y+ L+ A  ++   E  +     
Sbjct: 552 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 611

Query: 435 AKEDGVIPNLVMFKCII 451
              DG+ P+L+    +I
Sbjct: 612 MTSDGLKPSLLALNSLI 628



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 130/568 (22%), Positives = 223/568 (39%), Gaps = 119/568 (20%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGK 142
           +  VP P   +  ++ S+C+S+     A+ V+  +Q+  L    +L Y+ LI    +S K
Sbjct: 127 YSAVPAPYWHS--LIKSLCSSTSSLGLAYAVVSWLQKHNLCFSYELLYSILIHALGRSEK 184

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF-- 200
              ++E F       + P   TY ALI  CA+   + KA      MR    + D V +  
Sbjct: 185 ---LYEAFLLSQKQTLTP--LTYNALIGACARNNDIEKALNLISRMRQDGYQSDFVNYSL 239

Query: 201 -----------------------------------NALITACGQSGAVDRAFDVLAEMNA 225
                                              N +I    +SG   RA  +L    A
Sbjct: 240 VIQSLTRCNKIDSVMLQRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSRALQLLG--MA 297

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
           +   +     T+ +++ A AN+G+   A  +++ + +  IK   + Y   +    +TG  
Sbjct: 298 QATGLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPL 357

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A  +  +M K+GV PDE   S LID   +AG+ E+A  +L+E +   +      +S L
Sbjct: 358 KDAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRL 417

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +    +   WQK  ++ + MKSI +KP     N +I      + L   M     M S G+
Sbjct: 418 LAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGI 477

Query: 406 CPNTITYSILL------------------------VAC--------------ERKDDVEV 427
            P+ +T++ L+                        + C              ER DD++ 
Sbjct: 478 EPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMK- 536

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 487
              LL + K  G++PN+V    ++ +    Y K+   N+                   A+
Sbjct: 537 --RLLGKMKSQGILPNVVTHTTLVDV----YGKSGRFND-------------------AI 571

Query: 488 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV-SADALKRSNLC--SLI 544
               E    G  P+  + + ++          + E+ V    V ++D LK S L   SLI
Sbjct: 572 ECLEEMKSVGLKPSSTMYNALINAYA---QRGLSEQAVNAFRVMTSDGLKPSLLALNSLI 628

Query: 545 DGFGE--YDPRAFSLLEEAASFGIVPCV 570
           + FGE   D  AF++L+     G+ P V
Sbjct: 629 NAFGEDRRDAEAFAVLQYMKENGVKPDV 656


>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
          Length = 646

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 167/379 (44%), Gaps = 4/379 (1%)

Query: 82  RFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           R F LV    L     T+  L+     S +S  AF+V   ++  G K D   Y  L+   
Sbjct: 211 RCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDAL 270

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
           AK  KVD ++ VF +M     EP+ +TY  +I    K G+  ++   +  M  K   P+ 
Sbjct: 271 AKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNL 330

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           + +N +I A   +  VD+   + ++M  EV     +      L++  +  G    A  ++
Sbjct: 331 IAYNTMIQALANNRMVDKTIFLFSKMVVEVSNKFMNKSIYAYLVRTLSKLGHASEAHRLF 390

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             +  ++ +G  + Y   +      G    A  +   + +K +  D V  + ++   G  
Sbjct: 391 CNMWSFHDEGDRDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKL 450

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            K     ++ ++ K  G S  I SY+ L+ +   A   ++A++++E +++   KP + + 
Sbjct: 451 KKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISF 510

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N+LI  L     + +      +M+  GL P+ +TYS L+    + D VE+   L  +   
Sbjct: 511 NSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLA 570

Query: 438 DGVIPNLVMFKCIIGMCSR 456
           +G  PN+V +  ++    R
Sbjct: 571 EGCSPNIVTYNILLDCLER 589



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 7/221 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLST 94
           G+ +E +DLL  +  K +   D V +    +     K   +    ++ +    P+P + +
Sbjct: 416 GKTTEALDLLSKIHEKRI-STDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFS 474

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N+L+S    +   E A ++   ++ +  K D   + +LI    K+G +D     F EM 
Sbjct: 475 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 534

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+ P+V TY  LI+   K  +V  A   +  M ++   P+ V +N L+    +SG   
Sbjct: 535 EEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTA 594

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
            A D+ A++  +   + PD IT   L +  + + Q  R R 
Sbjct: 595 EAVDLYAKLKQQ--GLTPDSITYAVLERLQSGSHQKVRVRR 633


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 208/454 (45%), Gaps = 12/454 (2%)

Query: 10  QFPYPNGKHANYAHDVSE-QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKV-Y 63
           +F   N  ++N   D  E  + +YN L++      R+     LL +M  KG  D D+V Y
Sbjct: 161 RFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGC-DPDEVSY 219

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
                ++CK  K +KEA R   +   P++  +N L++        E AFQ+L  +   G+
Sbjct: 220 TTLISSLCKLGK-VKEA-RELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
             +   YTT+I   + +G V+    V  +M   G  PN+HT+ +LI G    G   +A  
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALD 337

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            +  M  + V P+ V +NAL+       ++  A  V  +M  E++   P+  T  AL+  
Sbjct: 338 FWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQM--EINGCCPNVRTYSALIDG 395

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
            A AG +D A EV+  +  +        YT  ++   +   +  A  + ++M  +   P+
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V  +  I     +G+V+ A ++  +  N G      +Y+ L+ +    + + +A  L +
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M+   ++  + T N +I   C    L + +E+L  M   G  P+ IT +I++ A  ++ 
Sbjct: 516 DMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQG 575

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
            V + + L+ +       P+++ +  +I G+C+ 
Sbjct: 576 KVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTH 609



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 192/418 (45%), Gaps = 26/418 (6%)

Query: 72  KSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           K +  I  A  +FK + N      T  T+ M++   AS ++ +    +L+ ++  G+   
Sbjct: 51  KHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLEGISCS 110

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
             L+ ++I +  ++G  +   + F+ M +  ++P V  Y  ++D      +       Y 
Sbjct: 111 EDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYS 170

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M+   ++P+   +N L+ A  ++  VD A  +L EM+++    DPD ++   L+ +   
Sbjct: 171 NMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSK--GCDPDEVSYTTLISSLCK 228

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
            G+V  ARE+        +  TP V  Y   IN   +   +E A  + D+M  KG+ P+ 
Sbjct: 229 LGKVKEAREL-------AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNV 281

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           +  + +I+    AG VE +  +L +   +G S  + +++SL+          +AL+ ++ 
Sbjct: 282 ISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDR 341

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M    + P V   NAL+  LC    L   + V + M+  G CPN  TYS L+    +  D
Sbjct: 342 MIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGD 401

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQIEN 480
           ++    + +     G  PN+V + C++ +  R   + +A  L E++        Q+EN
Sbjct: 402 LDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENM--------QVEN 451



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 145/370 (39%), Gaps = 42/370 (11%)

Query: 21  YAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +A   S  LH++  LI+    +G   E +D  + M R+G++                   
Sbjct: 308 FARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVV------------------- 348

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
                        P +  +N LM    S +    A  V   ++  G   + + Y+ LI  
Sbjct: 349 -------------PNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDG 395

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
            AK+G +D   EV++ M+  G  PNV  Y  ++D   +     +A+     M+ +N  P+
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V FN  I     SG VD A  V  +M        P+  T   L+ +     +   A  +
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNS--GCFPNTTTYNELLDSLLKDRRFGEAFGL 513

Query: 257 YKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            K +    I+     Y   I   CC+  G    A  +   M  +G  PD + ++ +ID  
Sbjct: 514 VKDMEHRGIELNLVTYNTIIYGYCCA--GMLGEALELLGKMVVRGTKPDAITVNIVIDAY 571

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              GKV  A +++           II+Y+SL+         ++A+     M S  + P V
Sbjct: 572 CKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPNV 631

Query: 375 STMNALITAL 384
           +T N L+  L
Sbjct: 632 ATWNVLVRHL 641


>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
 gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
          Length = 695

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 186/406 (45%), Gaps = 9/406 (2%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKD 107
           M   GL     +Y+     +CK+   + EA  + K +P    P + ++N+++     +++
Sbjct: 1   MLEAGLFPNAILYNNLISCLCKA-GMLAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARN 59

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
            E A   LR ++E G       Y++++ +  K+G V    +VF EM   G EP++  +  
Sbjct: 60  IEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNV 119

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+ G  +A ++ +A   +  M S+  KPD V +N +I    +   +D A  +L  M  E 
Sbjct: 120 LLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQE- 178

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             V P  +T   L+       ++ +A EV++ + +     T   Y++  N   + G    
Sbjct: 179 -DVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAGKLVE 237

Query: 288 ACSVYDDMTKKGV-IPDEVFLSALIDFAG-HAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           A  VY DM +K V + D  +   ++  +    G VEAA +++ E   + I+    +YS L
Sbjct: 238 ASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAA-KLVTEMMGKKIAPDFYAYSIL 296

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +     A+   +A E+++ M+   + PTV T N L+  L    +L   ME+   M   G 
Sbjct: 297 INGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQGR 356

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            P+T +Y++++       D      L     +DG++ N   +  +I
Sbjct: 357 LPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMI 402



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/441 (22%), Positives = 180/441 (40%), Gaps = 51/441 (11%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------K 85
           +N+L R G++ E   +  DM RK +   D  Y      + K      EA +        K
Sbjct: 226 FNKLQRAGKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKK 285

Query: 86  LVPN---------------------------------PTLSTFNMLMSVCASSKDSEGAF 112
           + P+                                 PT+ T+N L+    S+   + A 
Sbjct: 286 IAPDFYAYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAM 345

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           ++   + + G   D   Y  +I     +G  +  + +F +M+  GI  N  TY  +I G 
Sbjct: 346 ELTYFMLDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGF 405

Query: 173 AKAGQVAKAFGAYGIMRS-KNVK---PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
            K    + A+  +  M+S KN K   P+   +  LI++  ++  V+ AF +L+ M  +  
Sbjct: 406 IKDEAWSSAWMLFKRMQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGF 465

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
              P       L+   A AG++D A E+YK + + N +       I ++   + G  + A
Sbjct: 466 V--PSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEA 523

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
                 MT  G++PD+     L+      GK + A ++++E    G          L+GA
Sbjct: 524 KDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKLVEELVRDGKRPENQGLRQLLGA 583

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
                ++Q A E Y  + S+ ++ T+   N L+T+ C    L + ++ L  ++     P+
Sbjct: 584 LCAQGDFQGAYEFYCWLPSVGVEVTLGMHNTLVTSCC----LARKLDYLDMIEQREGVPD 639

Query: 409 TITYSILLVACE--RKDDVEV 427
            I   I     E  R+++V++
Sbjct: 640 VIVERIEKFRAELFREEEVKI 660



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 108/513 (21%), Positives = 194/513 (37%), Gaps = 91/513 (17%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+Y+ ++    + G +S+ +D+  +M  KG  + D V      +     + I EA   F+
Sbjct: 80  HAYSSIVQSFCKTGNVSKAMDVFAEMPAKGC-EPDIVNFNVLLSGLWRARKIHEARELFR 138

Query: 86  LVPN----PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            + +    P + T+N M+  +C   K  E  F + R+ QE  +      YTTLI    K 
Sbjct: 139 SMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQE-DVSPTFVTYTTLIDHLCKF 197

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV------- 193
            ++   +EVF +M           Y  L +   +AG++ +A   Y  M  KNV       
Sbjct: 198 TRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRAGKLVEASRVYSDMCRKNVCMTDNTY 257

Query: 194 -----------------------------KPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
                                         PD   ++ LI    ++     A ++  EM 
Sbjct: 258 SLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFYAYSILINGLCKARRPGEAKEMFQEMR 317

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIAINCCSQTG 283
                + P  +T   L++   +  ++  A E+ Y M+ +  +  T   Y + I      G
Sbjct: 318 G--RGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQGRLPDTCS-YNLMIRGFCANG 374

Query: 284 DWEFACSVYDDMTKKGV--------------IPDEVFLSALIDFAG-HAGK--------- 319
           D   A  ++ DM K G+              I DE + SA + F    +GK         
Sbjct: 375 DTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIKDEAWSSAWMLFKRMQSGKNDKVPAPNM 434

Query: 320 ---------------VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
                          VE AF++L   +++G    +  +  L+   + A     A ELY+ 
Sbjct: 435 FTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKE 494

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M  I  +  V + N L+  +     + +  + L  M   G+ P+  TY  L+V    +  
Sbjct: 495 MSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGK 554

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR 456
            +    L+ +   DG  P     + ++G +C++
Sbjct: 555 ADQARKLVEELVRDGKRPENQGLRQLLGALCAQ 587



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 118/262 (45%), Gaps = 16/262 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN +IR     G  +E   L +DM + G++     Y+       K + A   A+  FK 
Sbjct: 362 SYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIKDE-AWSSAWMLFKR 420

Query: 87  --------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
                   VP P + T+ +L+S    +   E AF++L  +++ G     K++  L++  A
Sbjct: 421 MQSGKNDKVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLA 480

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           ++G++D  FE++ EM     +  V +   L+DG  + G V +A      M    + PD+ 
Sbjct: 481 RAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKF 540

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            ++ L+      G  D+A  ++ E+  +     P++  +  L+ A    G    A E Y 
Sbjct: 541 TYDKLVVGLCWQGKADQARKLVEELVRDGK--RPENQGLRQLLGALCAQGDFQGAYEFYC 598

Query: 259 MIHKYNIKGTPEVY-TIAINCC 279
            +    ++ T  ++ T+  +CC
Sbjct: 599 WLPSVGVEVTLGMHNTLVTSCC 620


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 188/419 (44%), Gaps = 11/419 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK--EAF-RFFKLVPNPT 91
           L + G     + L  D+  +G       ++      CK +K I+  E F R  +L   P 
Sbjct: 474 LFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPD 533

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+  L+       + E AF+V   +++  +    +LY +LI    KS K   + ++  
Sbjct: 534 GVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLS 593

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   G+ PNV TYG LI G    G++ KAF AY  M  K   P+ ++ + ++++  + G
Sbjct: 594 EMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLG 653

Query: 212 AVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
            +D A  +L +M N +V     DH     L KA  + G +D  +    +         P 
Sbjct: 654 RIDEANMLLQKMVNLDVFL---DHGYFDRLHKA--DDGNLDSQKIADTLDESSKSFSLPN 708

Query: 271 --VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             VY IAI    ++G  + A  ++  +  +G  PD      LI     AG V  AF +  
Sbjct: 709 SVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRD 768

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   +G++  II+Y++L+     + N  +A +L++ +    L P V + N LI   C   
Sbjct: 769 EMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNG 828

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
              + +++ + M   G+ P+ ITYS L+    ++ D+     LL + +E     N+  F
Sbjct: 829 NTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKF 887



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 190/447 (42%), Gaps = 14/447 (3%)

Query: 28  QLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L S NRL    +R+G  S  I + + + R G++  D    +   N       +  A  F
Sbjct: 182 SLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVP-DVFTCSIMVNAYCKDGWVNVAVDF 240

Query: 84  FK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            K    L     + T+N L+  C S  D E A  VL+L+ E G+  +    T LI    +
Sbjct: 241 VKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKGYCR 300

Query: 140 SGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
             K++   +V  EM  + G+  + + YG LIDG  +  ++  A      M +  ++ +  
Sbjct: 301 QCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLF 360

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           + NALI    ++G V  A  +L  M      ++P+  +   LM      G V +A  VY 
Sbjct: 361 ICNALINGYCKNGQVSEAERLLMRMVD--WDLEPESYSYSTLMDGFCREGLVTKAISVYN 418

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + +  I+     +   +    + G +E A  V+  M K+GV PDEV    L+D     G
Sbjct: 419 EMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKMG 478

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +   A  +  +   +G      ++++++      +   +A E +  MK +  +P   T  
Sbjct: 479 EFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTYR 538

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI   C    + +  +V   M+   + P+   Y+ L+    +       + LLS+    
Sbjct: 539 TLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMDLLSEMCLK 598

Query: 439 GVIPNLVMFKCII-GMCSR-RYEKART 463
           G+ PN+V +  +I G C   R +KA T
Sbjct: 599 GLSPNVVTYGTLIAGWCDEGRLDKAFT 625



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 120/551 (21%), Positives = 217/551 (39%), Gaps = 57/551 (10%)

Query: 77  IKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           IK A   F    KL   P+L + N L+S      +S  A  V   +   G+  D    + 
Sbjct: 164 IKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSI 223

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           ++    K G V+   +   EM   G E NV TY +LIDGC   G + +A     +M  + 
Sbjct: 224 MVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERG 283

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDP------------------- 232
           +  ++V    LI    +   ++ A  VL EM  +E   +D                    
Sbjct: 284 ILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDA 343

Query: 233 -----DHITIG---------ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
                + + +G         AL+      GQV  A  +   +  ++++     Y+  ++ 
Sbjct: 344 VRLRDEMLNVGLRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDG 403

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             + G    A SVY++M + G+  + V  ++L+      G  E A  +      +G++  
Sbjct: 404 FCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPD 463

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
            +SY +L+        + +AL L+  + +     +    N +I   C  +++ +  E  +
Sbjct: 464 EVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFN 523

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCS 455
            MK LG  P+ +TY  L+    +  +VE    +  + +++ ++P++ ++  +IG      
Sbjct: 524 RMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSK 583

Query: 456 RRYEKARTLNEHVLSFNSGRPQIENKWTSL-----------ALMVYREAIVAGTIPTVEV 504
           +  E    L+E  L   S  P +    T +           A   Y + I  G  P V +
Sbjct: 584 KTREVMDLLSEMCLKGLS--PNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVII 641

Query: 505 VSKVLGCLQLPYNADIRERLVE---NLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEA 561
            SK++  L      D    L++   NL V  D      L    DG  +    A +L E +
Sbjct: 642 CSKIVSSLYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESS 701

Query: 562 ASFGIVPCVSF 572
            SF +   V +
Sbjct: 702 KSFSLPNSVVY 712



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 152/351 (43%), Gaps = 7/351 (1%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           ++  ++    + G +     VF  M   G  P++ +   L+    + G+ + A   Y  +
Sbjct: 150 VFDMILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHI 209

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               + PD    + ++ A  + G V+ A D + EM  +    + + +T  +L+  C + G
Sbjct: 210 NRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEM--DYLGFELNVVTYNSLIDGCVSIG 267

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFL 307
            ++RA  V K++ +  I       T+ I    +    E A  V  +M + +G++ DE   
Sbjct: 268 DMERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAY 327

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMK 366
             LID      K++ A  +  E  N G+ + +   ++L+ G C N +   +A  L   M 
Sbjct: 328 GVLIDGYCRVCKMDDAVRLRDEMLNVGLRMNLFICNALINGYCKNGQ-VSEAERLLMRMV 386

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              L+P   + + L+   C    + K + V ++M  +G+  N +T++ LL    R    E
Sbjct: 387 DWDLEPESYSYSTLMDGFCREGLVTKAISVYNEMLRVGIQSNVVTHNSLLKGLCRVGAFE 446

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHVLSFNSGR 475
             L +     + GV P+ V +  ++ +  +  E  +A  L   +L+   GR
Sbjct: 447 DALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGR 497



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 6/188 (3%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           E+ T + N  S    W     V++D      + D +     +      G ++ A  +   
Sbjct: 119 ELVTPSKNNYSSLVVWNELVRVFEDFKFSPTVFDMI-----LKIYCEKGMIKNALHVFDN 173

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G    + S + L+ +         A+ +Y+H+  + + P V T + ++ A C    
Sbjct: 174 MGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGW 233

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +   ++ + +M  LG   N +TY+ L+  C    D+E   M+L    E G++ N V    
Sbjct: 234 VNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTL 293

Query: 450 II-GMCSR 456
           +I G C +
Sbjct: 294 LIKGYCRQ 301


>gi|307108031|gb|EFN56272.1| hypothetical protein CHLNCDRAFT_51958 [Chlorella variabilis]
          Length = 1271

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 171/354 (48%), Gaps = 16/354 (4%)

Query: 114  VLRLVQ--EAGLK--ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
            VLR++   + GL    D  + T  ++  AK G+++    V+  M+  G++P   T+ ALI
Sbjct: 669  VLRIIHGMQMGLPNYRDTHVQTVAVSVAAKDGRLEDALAVYRLMLQDGVQPKAPTFNALI 728

Query: 170  DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
              C +AGQ AK F    +M  + +  D V  + LI  C + G   RA DV   M  +   
Sbjct: 729  AACMRAGQPAKGFRFLEVM--QGMGADVVTVSTLIACCERLGDWQRARDVWQWMVDQG-- 784

Query: 230  VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW---E 286
            ++PD I    ++       Q DRA  V++ + +  + G+   Y    +  ++ G+W    
Sbjct: 785  LEPDTICYNTMISCMERCNQPDRALAVFEQMSEAGVAGSSATYATLCDVFAKQGNWAKLR 844

Query: 287  FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVGIISY 342
             A  V + M  +G  P ++  + L+  A   G  + A E+ +  ++     G     ++Y
Sbjct: 845  TAVQVKEWMEAQGEDPAQLTYAELMVRASEGGNWKRALELFEGMESSLTISGSQPNAVTY 904

Query: 343  SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
            S+ + AC+   +WQ+A+EL + M +  L  +    N+++ A     QL   +++L +M+ 
Sbjct: 905  SAAIIACARLADWQRAVELKDQMLARGLPASPIVYNSVLAACEASRQLDAALDLLDEMRV 964

Query: 403  LGLCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
             G+  +  TYS L+  C   +  +   + L  + +E+G+ PN+V+   ++ +C+
Sbjct: 965  AGVPRDQYTYSTLMSCCYHGEGHLGPAMRLFQEMQEEGLTPNIVVVNALLSVCA 1018



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 145/336 (43%), Gaps = 9/336 (2%)

Query: 37   RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLST 94
            + GR+ + + +   M + G+      ++A     C       + FRF +++      + T
Sbjct: 698  KDGRLEDALAVYRLMLQDGVQPKAPTFNA-LIAACMRAGQPAKGFRFLEVMQGMGADVVT 756

Query: 95   FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
             + L++ C    D + A  V + + + GL+ D   Y T+I+   +  + D    VF +M 
Sbjct: 757  VSTLIACCERLGDWQRARDVWQWMVDQGLEPDTICYNTMISCMERCNQPDRALAVFEQMS 816

Query: 155  NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI---MRSKNVKPDRVVFNALITACGQSG 211
             AG+  +  TY  L D  AK G  AK   A  +   M ++   P ++ +  L+    + G
Sbjct: 817  EAGVAGSSATYATLCDVFAKQGNWAKLRTAVQVKEWMEAQGEDPAQLTYAELMVRASEGG 876

Query: 212  AVDRAFDVLAEMNAE--VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
               RA ++   M +   +    P+ +T  A + ACA      RA E+   +    +  +P
Sbjct: 877  NWKRALELFEGMESSLTISGSQPNAVTYSAAIIACARLADWQRAVELKDQMLARGLPASP 936

Query: 270  EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVEAAFEILQ 328
             VY   +  C  +   + A  + D+M   GV  D+   S L+    H  G +  A  + Q
Sbjct: 937  IVYNSVLAACEASRQLDAALDLLDEMRVAGVPRDQYTYSTLMSCCYHGEGHLGPAMRLFQ 996

Query: 329  EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
            E + +G++  I+  ++L+  C+   +   A  +Y H
Sbjct: 997  EMQEEGLTPNIVVVNALLSVCATVGDADAASRVYRH 1032



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 153/397 (38%), Gaps = 40/397 (10%)

Query: 90  PTLSTFNM--LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           PT S   M  ++ +  S  + E A  ++ L ++ G++ D  ++  ++  CAK+GK + + 
Sbjct: 431 PTRSNDIMAAMLKLANSLLEDEAAVVLVHLAKQWGVELDRGMWQHVLDVCAKAGKAEVVL 490

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +  EM   G+ P+   +  L+    KAG   +A  AY  MR + ++ +   +   +   
Sbjct: 491 AMMQEMEARGLPPDSVAHTILVMAHEKAGAWREALAAYRHMRDRGLERNSFTYRRALAGS 550

Query: 208 GQSGAVDRAFDVLA---------EMNAEVHPVDPD-----HITIGALMKACANAGQVDRA 253
           G   A   A    A         +   +  PV P      H    AL+ A   A ++  A
Sbjct: 551 GPGPAFLWAGGGAAAGGSAGRNPQSGCQASPVSPRLASPAHAACLALVSALVGADRLGDA 610

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            EV   +    + G   VY   IN   +    +    + + M + G              
Sbjct: 611 CEVLDWMADDGVAGNAVVYQTLINAFLERDRQDKVDWLLERMRRDGR-----------GR 659

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSL------MGACSNAKNWQKALELYEHMKS 367
           A  A +  A   I+      G+ +G+ +Y         +   +     + AL +Y  M  
Sbjct: 660 APGAARWPAVLRII-----HGMQMGLPNYRDTHVQTVAVSVAAKDGRLEDALAVYRLMLQ 714

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             ++P   T NALI A     Q  K    L  M+ +G   + +T S L+  CER  D + 
Sbjct: 715 DGVQPKAPTFNALIAACMRAGQPAKGFRFLEVMQGMGA--DVVTVSTLIACCERLGDWQR 772

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
              +     + G+ P+ + +  +I    R  +  R L
Sbjct: 773 ARDVWQWMVDQGLEPDTICYNTMISCMERCNQPDRAL 809



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 66/329 (20%), Positives = 127/329 (38%), Gaps = 44/329 (13%)

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           ++   ++ C++ G  E   ++  +M  +G+ PD V  + L+     AG    A    +  
Sbjct: 472 MWQHVLDVCAKAGKAEVVLAMMQEMEARGLPPDSVAHTILVMAHEKAGAWREALAAYRHM 531

Query: 331 KNQGISVGIISYSSLMGACS--------------------NAKNWQKALELYEHMKSIKL 370
           +++G+     +Y   +                        N ++  +A  +   + S   
Sbjct: 532 RDRGLERNSFTYRRALAGSGPGPAFLWAGGGAAAGGSAGRNPQSGCQASPVSPRLAS--- 588

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P  +   AL++AL   D+L    EVL  M   G+  N + Y  L+ A   +D  +    
Sbjct: 589 -PAHAACLALVSALVGADRLGDACEVLDWMADDGVAGNAVVYQTLINAFLERDRQDKVDW 647

Query: 431 LLSQAKED--GVIPNLVMFKCII--------GMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
           LL + + D  G  P    +  ++        G+ + R    +T+   V +   GR  +E+
Sbjct: 648 LLERMRRDGRGRAPGAARWPAVLRIIHGMQMGLPNYRDTHVQTVAVSVAA-KDGR--LED 704

Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRERLVENLGVSADALKRSN 539
                AL VYR  +  G  P     + ++  C++    A     L    G+ AD +  S 
Sbjct: 705 -----ALAVYRLMLQDGVQPKAPTFNALIAACMRAGQPAKGFRFLEVMQGMGADVVTVST 759

Query: 540 LCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
           L +  +  G++  RA  + +     G+ P
Sbjct: 760 LIACCERLGDWQ-RARDVWQWMVDQGLEP 787


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/494 (24%), Positives = 211/494 (42%), Gaps = 26/494 (5%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T N++++        +     L  +++ G+ AD   Y TLI    + G +   FEV + M
Sbjct: 187 TLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSM 246

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G++P + TY A+I+G  K G+  +A G +  M S  + PD   +N L+    ++   
Sbjct: 247 SGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNF 306

Query: 214 DRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
             A D+ ++M   +H  V PD I+  +L+   +  G +D+A   ++ +    +     +Y
Sbjct: 307 LEAKDIFSDM---LHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIY 363

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           TI IN   + G    A  + D M ++G   D V  + +++       +  A  +  E   
Sbjct: 364 TILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVE 423

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G+     ++++L+       N  KAL L+  M    +KP + T N LI   C   ++ K
Sbjct: 424 RGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEK 483

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
             E+ ++M S  + PN I+Y+IL+        V     L  +    G+ P LV    +I 
Sbjct: 484 ANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIK 543

Query: 452 GMC-SRRYEKARTLNEHVLSFNSGRPQI----------ENKWTSLALMVYREAIVAGTIP 500
           G C S    KA      ++S   G   I          + ++   A  +  +    G  P
Sbjct: 544 GYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQP 603

Query: 501 TVEVVSKVLG--CLQ--LPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRA 554
            V   + +L   C Q  +     I  +++E  G+  D   RS   +LI+G+   D    A
Sbjct: 604 DVVTYNVILNGFCRQGRMQEAELILRKMIER-GIDPD---RSTYTTLINGYVSQDNLKEA 659

Query: 555 FSLLEEAASFGIVP 568
           F   +E    G VP
Sbjct: 660 FRFHDEMLQRGFVP 673



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/428 (22%), Positives = 198/428 (46%), Gaps = 9/428 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+G + E  +++  M  KGL      Y+A    +CK  + ++    F ++
Sbjct: 222 TYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM 281

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +    +P  +T+N L+     + +   A  +   +   G+  D   +++LI   +++G +
Sbjct: 282 LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHL 341

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D     F +M  +G+ P+   Y  LI+G  + G +++A      M  +    D V +N +
Sbjct: 342 DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTI 401

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +    +   +  A  +  EM      V PD  T   L+      G + +A  ++ ++ + 
Sbjct: 402 LNGLCKKKLLADANALFDEMVE--RGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQK 459

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           NIK     Y I I+   +T + E A  ++++M  + + P+ +  + L++   + G V  A
Sbjct: 460 NIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEA 519

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           F +  E   +GI   +++ ++++     + +  KA E    M S  + P   T N LI  
Sbjct: 520 FRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLING 579

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
              G+ + K   +++ M++ GL P+ +TY+++L    R+  ++   ++L +  E G+ P+
Sbjct: 580 FVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPD 639

Query: 444 LVMFKCII 451
              +  +I
Sbjct: 640 RSTYTTLI 647



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 182/429 (42%), Gaps = 50/429 (11%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S    +YN L+    R     E  D+  DM  +G+   D +  +    V      + +A
Sbjct: 286 LSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGV-SPDLISFSSLIGVSSRNGHLDQA 344

Query: 81  FRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
             +F+      LVP+  + T  ++   C +   SE A ++   + E G   D   Y T++
Sbjct: 345 LMYFRDMKTSGLVPDNVIYTI-LINGYCRNGMMSE-ALEIRDKMLEQGCALDVVAYNTIL 402

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K   +     +F EMV  G+ P+  T+  LI G  K G + KA   +GIM  KN+K
Sbjct: 403 NGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIK 462

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V +N LI    ++  +++A ++  EM +    + P+HI+   L+    N G V  A 
Sbjct: 463 PDIVTYNILIDGFCKTTEMEKANELWNEMIS--RKIFPNHISYAILVNGYCNLGFVSEAF 520

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            ++                                   D+M +KG+ P  V  + +I   
Sbjct: 521 RLW-----------------------------------DEMIRKGIKPTLVTCNTVIKGY 545

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
             +G +  A E L +  ++G+    I+Y++L+      +   KA  L   M++  L+P V
Sbjct: 546 CRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDV 605

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N ++   C   ++ +   +L  M   G+ P+  TY+ L+     +D+++       +
Sbjct: 606 VTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDE 665

Query: 435 AKEDGVIPN 443
             + G +P+
Sbjct: 666 MLQRGFVPD 674



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 218/497 (43%), Gaps = 30/497 (6%)

Query: 95  FNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           F++L+ S   + K +EG     ++++  G         +L+    K G VD  +EV++E+
Sbjct: 118 FDLLIRSYVQARKLNEGT-DTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEI 176

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
             +GIE NV+T   +++   K  ++         M  K +  D V +N LI A  + G +
Sbjct: 177 ARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLL 236

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY- 272
             AF+V+  M+ +   + P   T  A++      G+  RA+ V+  +    +      Y 
Sbjct: 237 GEAFEVMNSMSGK--GLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYN 294

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T+ +  C      E A  ++ DM  +GV PD +  S+LI  +   G ++ A    ++ K 
Sbjct: 295 TLLVESCRNNNFLE-AKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKT 353

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            G+    + Y+ L+ G C N     +ALE+ + M        V   N ++  LC    L 
Sbjct: 354 SGLVPDNVIYTILINGYCRNGM-MSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLA 412

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               +  +M   G+ P+  T++ L+    ++ ++   L L     +  + P++V +  +I
Sbjct: 413 DANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILI 472

Query: 452 -GMC-SRRYEKARTLNEHVLSFNSGRPQIE-----NKWTSL-----ALMVYREAIVAGTI 499
            G C +   EKA  L   ++S       I      N + +L     A  ++ E I  G  
Sbjct: 473 DGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIK 532

Query: 500 PTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPR 553
           PT+   + V+        L    +   +++   GV  D++  +   +LI+GF  GEY  +
Sbjct: 533 PTLVTCNTVIKGYCRSGDLSKADEFLGKMISE-GVGPDSITYN---TLINGFVKGEYMDK 588

Query: 554 AFSLLEEAASFGIVPCV 570
           AF L+ +  + G+ P V
Sbjct: 589 AFFLINKMETKGLQPDV 605



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 153/368 (41%), Gaps = 19/368 (5%)

Query: 104 SSKDSEGAFQVLRLVQEAGLK----------------ADCKLYTTLITTCAKSGKVDAMF 147
           S + S+    +LR+++ +G+                  D  ++  LI +  ++ K++   
Sbjct: 76  SKRLSDAQTLILRMIRRSGVSRVEIVESLISMSSTCGVDNLVFDLLIRSYVQARKLNEGT 135

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           + F  +   G   +++   +L+ G  K G V  A+  Y  +    ++ +    N ++ A 
Sbjct: 136 DTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNAL 195

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +   +D     L +M  E   +  D +T   L+ A    G +  A EV   +    +K 
Sbjct: 196 CKDHKIDDVKPFLIDM--EQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKP 253

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   Y   IN   + G +  A  V+++M   G+ PD    + L+  +        A +I 
Sbjct: 254 TLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIF 313

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            +  ++G+S  +IS+SSL+G  S   +  +AL  +  MK+  L P       LI   C  
Sbjct: 314 SDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRN 373

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             + + +E+   M   G   + + Y+ +L    +K  +     L  +  E GV+P+   F
Sbjct: 374 GMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTF 433

Query: 448 KCII-GMC 454
             +I G C
Sbjct: 434 TTLIHGHC 441



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 162/349 (46%), Gaps = 47/349 (13%)

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS-------QTGDW 285
           D++    L+++   A +++   + +K++ +   KG    + ++IN C+       + G  
Sbjct: 114 DNLVFDLLIRSYVQARKLNEGTDTFKILRR---KG----FLVSINACNSLLGGLVKMGWV 166

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A  VY+++ + G+  +   L+ +++      K++     L + + +GI   I++Y++L
Sbjct: 167 DLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTL 226

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           + A        +A E+   M    LKPT+ T NA+I  LC   +  +   V ++M S+GL
Sbjct: 227 INAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGL 286

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
            P+T TY+ LLV   R ++      + S     GV P+L+ F  +IG+ SR        N
Sbjct: 287 SPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSR--------N 338

Query: 466 EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIR 521
            H+                 ALM +R+   +G +P   + + ++        +    +IR
Sbjct: 339 GHL---------------DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIR 383

Query: 522 ERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 568
           ++++E  G + D +  +   ++++G  +      A +L +E    G+VP
Sbjct: 384 DKMLEQ-GCALDVVAYN---TILNGLCKKKLLADANALFDEMVERGVVP 428



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 127/278 (45%), Gaps = 7/278 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++  +++   L ++M  +G++     +       CK +  + +A   F ++     
Sbjct: 403 NGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCK-EGNMGKALSLFGIMTQKNI 461

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N+L+     + + E A ++   +    +  +   Y  L+      G V   F 
Sbjct: 462 KPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFR 521

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ EM+  GI+P + T   +I G  ++G ++KA    G M S+ V PD + +N LI    
Sbjct: 522 LWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFV 581

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   +D+AF ++ +M  E   + PD +T   ++      G++  A  + + + +  I   
Sbjct: 582 KGEYMDKAFFLINKM--ETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPD 639

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
              YT  IN      + + A   +D+M ++G +PD+ F
Sbjct: 640 RSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPDDDF 677


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 129/517 (24%), Positives = 228/517 (44%), Gaps = 49/517 (9%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G+  +   ++ +M   G +     Y      +C + + ++ AF  FK +      P + T
Sbjct: 468 GKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASR-VENAFFLFKEMKGTGVVPDVYT 526

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + +L+   + +   + A   L  +   G +     YTTLI    K+ KV    E+F  M+
Sbjct: 527 YTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMI 586

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS--------------KNV--KPDRV 198
             G  PNV TY ALIDG  K+G + KA   Y  MR                NV  KP+ V
Sbjct: 587 AKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVV 646

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY- 257
            + AL+    ++  V  A D+L  M   V   +P+ I   AL+     A ++D A+EV+ 
Sbjct: 647 TYGALVDGLCKAHKVKDARDLLETMF--VDGCEPNTIVYDALIDGFCKAAKLDEAQEVFH 704

Query: 258 KMIHK-YNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           KM+ + YN    P VYT +  I+   +    +    V   M +    P+ V  + +ID  
Sbjct: 705 KMVERGYN----PNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGL 760

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               K + A++++   + +G    +++Y++++     A    K LEL+  M S    P  
Sbjct: 761 SKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNF 820

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T   LI   C    L +   +L +MK      +  +Y  ++   +R+  + +G  LL +
Sbjct: 821 VTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLG--LLEE 878

Query: 435 AKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492
            +++G  P ++++K +I    +  R E A  L++ V+S +      +N +TSL       
Sbjct: 879 VEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSL------- 931

Query: 493 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLG 529
                 I +    SK+    +L Y+  IR+ ++ +LG
Sbjct: 932 ------IYSFSYASKIDHAFELFYDM-IRDGVIPDLG 961



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 126/576 (21%), Positives = 232/576 (40%), Gaps = 48/576 (8%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           + + ++  C  +L  M  +G      ++++     CKS      A++  K +      P 
Sbjct: 354 LNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDD-FSYAYKLLKKMEKCECKPG 412

Query: 92  LSTFNMLMSVCASSKDSEG--AFQVLRLVQEAGLKADCKLYTTLITTCAKS----GKVDA 145
              +N+L+    S  +  G   F++        L A   L    + + A+     GK + 
Sbjct: 413 YVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEK 472

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            ++V HEM+  G  P+  TY  +I     A +V  AF  +  M+   V PD   +  LI 
Sbjct: 473 AYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILID 532

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              ++G + +A + L EM  +    +P  +T   L+ A   A +V  A E+++++     
Sbjct: 533 CFSKAGIIKQAHNWLDEMVRD--GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGC 590

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 YT  I+   ++G+ E AC +Y  M     IPD                V+  F+
Sbjct: 591 FPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPD----------------VDMYFK 634

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           I     N      +++Y +L+     A   + A +L E M     +P     +ALI   C
Sbjct: 635 I---KNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFC 691

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              +L +  EV   M   G  PN  TYS L+    +   +++ L +LS+  E+   PN+V
Sbjct: 692 KAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIV 751

Query: 446 MFKCIIGMCSRRYEKARTLNEHVLSFNSG-RPQIENKWTSL------------ALMVYRE 492
           ++  +I   S+  +        ++    G +P +   +T++             L ++RE
Sbjct: 752 IYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVT-YTAMIDGFGKAGKVDKCLELFRE 810

Query: 493 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP 552
               G  P     + ++       + D    L+E +  +      S+ C +I+G+     
Sbjct: 811 MGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFI 870

Query: 553 RAFSLLEEAASFGIVPCVSFKEIPV--VVDARKLEI 586
            +  LLEE    G  P +   ++ +   V A +LE+
Sbjct: 871 LSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEV 906



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 153/342 (44%), Gaps = 10/342 (2%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           + L L+++     +  LY  +I+   ++   +   +  + M +    PNV TY  L+ GC
Sbjct: 294 EALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGC 353

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
               Q+ +      +M ++   P   +FN+L+ A  +S     A+ +L +M  E     P
Sbjct: 354 LNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKM--EKCECKP 411

Query: 233 DHITIGALMKACANAGQV------DRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDW 285
            ++    L+ +  + G++      + A + Y +M+    +     V + A  C    G +
Sbjct: 412 GYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFA-RCLCGFGKF 470

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           E A  V  +M   G +PD    S +I F  +A +VE AF + +E K  G+   + +Y+ L
Sbjct: 471 EKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTIL 530

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +   S A   ++A    + M     +PTV T   LI A     ++    E+   M + G 
Sbjct: 531 IDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGC 590

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            PN ITY+ L+    +  ++E    + ++ + D  IP++ M+
Sbjct: 591 FPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMY 632



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 149/340 (43%), Gaps = 17/340 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L +  ++ +  DLLE M   G      VY A     CK+ K  +    F K+V    NP 
Sbjct: 655 LCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPN 714

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ L+      K  +   +VL  + E     +  +YT +I   +K  K D  +++  
Sbjct: 715 VYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLML 774

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G +PNV TY A+IDG  KAG+V K    +  M SK   P+ V +  LI  C  +G
Sbjct: 775 MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATG 834

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR----AREVYKMIHKYNIKG 267
            +D A+ +L EM        P H++       C       R    +  + + + K     
Sbjct: 835 HLDEAYALLEEMKQTYW---PKHVS-----SYCKVIEGYKREFILSLGLLEEVEKNGSAP 886

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEAAFE 325
           T  +Y + I+   + G  E A  ++ ++      +   +   ++LI    +A K++ AFE
Sbjct: 887 TILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFE 946

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           +  +    G+   + ++  L+      + W++AL+L + +
Sbjct: 947 LFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQLSDSL 986



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 114/528 (21%), Positives = 214/528 (40%), Gaps = 58/528 (10%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
            VPN  L  +N ++S    +   E A   L  ++      + + Y  L+  C    ++  
Sbjct: 304 FVPNTIL--YNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGR 361

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              +   M+  G  P+   + +L+    K+   + A+     M     KP  VV+N LI 
Sbjct: 362 CKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIG 421

Query: 206 ACGQSGAV---------DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           +    G +         ++A++ +      ++ V+     + +  +     G+ ++A   
Sbjct: 422 SICSGGELPGPVTFELAEKAYNEMLSAGTVLNKVN-----VVSFARCLCGFGKFEKA--- 473

Query: 257 YKMIHKYNIKG-TPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           YK+IH+    G  P+   Y+  I         E A  ++ +M   GV+PD    + LID 
Sbjct: 474 YKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDC 533

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG ++ A   L E    G    +++Y++L+ A   AK    A EL+E M +    P 
Sbjct: 534 FSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN 593

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMK----------------SLGLCPNTITYSILLV 417
           V T  ALI   C    + K  ++ + M+                ++   PN +TY  L+ 
Sbjct: 594 VITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVD 653

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA---------RTLNE 466
              +   V+    LL     DG  PN +++  +I G C + + ++A         R  N 
Sbjct: 654 GLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNP 713

Query: 467 HVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL- 524
           +V +++S   ++ ++K   L L V  + +     P + + ++++  L      D   +L 
Sbjct: 714 NVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLM 773

Query: 525 --VENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 568
             +E  G   + +  +   ++IDGFG+     +   L  E  S G  P
Sbjct: 774 LMMEEKGCKPNVVTYT---AMIDGFGKAGKVDKCLELFREMGSKGCAP 818



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/366 (20%), Positives = 156/366 (42%), Gaps = 17/366 (4%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
            N+L+  C  +     A + L  +++ G K     Y  L+    ++ K+D    V  EM 
Sbjct: 209 LNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMS 268

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+  +  T G       K G+  +A     ++  ++  P+ +++N +I+   ++   +
Sbjct: 269 ELGLSMDEFTLGFFAQALCKVGKWREALS---LIEKEDFVPNTILYNKMISGLCEASFFE 325

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A D L  M +      P+  T   L+  C N  Q+ R + +  M+       +  ++  
Sbjct: 326 EAMDFLNRMRST--SCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNS 383

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA--AFEILQEAKN 332
            ++   ++ D+ +A  +   M K    P  V  + LI      G++     FE+ ++A N
Sbjct: 384 LVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYN 443

Query: 333 QGISVG-------IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + +S G       ++S++  +  C   K ++KA ++   M      P  ST + +I  LC
Sbjct: 444 EMLSAGTVLNKVNVVSFARCL--CGFGK-FEKAYKVIHEMMGNGFVPDTSTYSEVIGFLC 500

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           +  ++     +  +MK  G+ P+  TY+IL+    +   ++     L +   DG  P +V
Sbjct: 501 NASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVV 560

Query: 446 MFKCII 451
            +  +I
Sbjct: 561 TYTTLI 566



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 104/250 (41%), Gaps = 9/250 (3%)

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           + G+ DR   V  E   E+   D + +   +  L++ C   G  + A E    +  +  K
Sbjct: 182 ERGSYDR---VPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYK 238

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            T   Y   +    +    + A  V+ +M++ G+  DE  L          GK   A  +
Sbjct: 239 PTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSL 298

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +++   +      I Y+ ++     A  +++A++    M+S    P V T   L+    +
Sbjct: 299 IEK---EDFVPNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLN 355

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             QL +   +LS M + G  P+   ++ L+ A  + DD      LL + ++    P  V+
Sbjct: 356 KKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVV 415

Query: 447 FKCIIG-MCS 455
           +  +IG +CS
Sbjct: 416 YNILIGSICS 425



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 4/151 (2%)

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           AL+D            E L+E +     V     + L+  C     W  ALE    +K  
Sbjct: 176 ALLDVFERGSYDRVPEEFLREIRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDF 235

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
             KPT  T NAL+      D+L     V  +M  LGL  +  T      A  +       
Sbjct: 236 GYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREA 295

Query: 429 LMLLSQAKEDGVIPNLVMF-KCIIGMCSRRY 458
           L L+   KED  +PN +++ K I G+C   +
Sbjct: 296 LSLIE--KED-FVPNTILYNKMISGLCEASF 323


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 184/394 (46%), Gaps = 15/394 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPNPTLS 93
           L + GR+   + LLE M ++G    D   H+   N +CK+ K I+EA  F + + N T+S
Sbjct: 59  LCKAGRVDSALSLLETMIKRGYCP-DMATHSMLINELCKADK-IQEAQEFLQGM-NRTIS 115

Query: 94  T-------FNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           T       +N L++    +K    AF +   +V E  +  D   Y+ LI    K  ++  
Sbjct: 116 TRASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGR 175

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             +++ +M++    PNV TY A ++G  + G++A A G Y  M S    PD + ++ LI 
Sbjct: 176 AEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIH 235

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
               +   D+A ++   M +      P+ +T   L+       + D A E+++ + +   
Sbjct: 236 GFSLARKHDQAHELFEAMISR--GCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGC 293

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 YT  +      G  E A  V+D+M  KG  PD V  + L+     AGK   A +
Sbjct: 294 DPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQ 353

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITAL 384
           + Q   ++      +S++ ++   S AK    A+E++E M+      P + T N+LI  L
Sbjct: 354 LFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGL 413

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           C   +L + M+V  ++  L L P+   +++LL A
Sbjct: 414 CGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 447



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 10/261 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLV 87
           N L+R+GRI++   + E+M   G    ++    + H   F++ +      E F       
Sbjct: 200 NGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHG--FSLARKHDQAHELFEAMISRG 257

Query: 88  PNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             P   T+N +L  +C  SK  E A ++ R + E G   D   YTTL+      GK++  
Sbjct: 258 CRPNAVTYNCLLHGLCKESKPDE-AHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQA 316

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            EVF EMV+ G +P+V  Y  L+ G  +AG+  +A   + +M S+  KPD V  N +I  
Sbjct: 317 VEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDG 376

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             ++  +D A +V   M  + H   PD +T  +L+       ++  A +V+K I +  + 
Sbjct: 377 LSKAKRLDDAVEVFERMEQD-HGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLS 435

Query: 267 GTPEVYTIAINCCSQTGDWEF 287
             P  + + +      G   F
Sbjct: 436 PDPHAFNVLLEAMYAAGHKPF 456



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 9/326 (2%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT---LITTCAKSGKVDAMFEVFHEM 153
            L  +C S K  E AF+  R +QE+   +      T   +I    K+G+VD+   +   M
Sbjct: 17  FLGGLCKSGK-IEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALSLLETM 75

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFG-AYGIMRSKNVKPDRVV-FNALITACGQSG 211
           +  G  P++ T+  LI+   KA ++ +A     G+ R+ + +      +N+L+ +  ++ 
Sbjct: 76  IKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSLCKAK 135

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V +AF + + M +E   V PD ++   L+       ++ RA ++YK +   N       
Sbjct: 136 KVHQAFAIFSTMVSE-RSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTT 194

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +N   + G    A  VY++M   G  PD +  S LI     A K + A E+ +   
Sbjct: 195 YNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMI 254

Query: 332 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           ++G     ++Y+ L+ G C  +K   +A EL+  M      P   T   L+   C+  ++
Sbjct: 255 SRGCRPNAVTYNCLLHGLCKESKP-DEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKI 313

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILL 416
            + +EV  +M S G  P+ + Y+ LL
Sbjct: 314 EQAVEVFDEMVSKGHDPDVVAYNCLL 339



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 26/215 (12%)

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVS 375
           AG+V++A  +L+    +G    + ++S L+     A   Q+A E  + M ++I  + +  
Sbjct: 62  AGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSC 121

Query: 376 -TMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLS 433
            + N+L+ +LC   ++ +   + S M S   + P+ ++YSIL+    + D++     L  
Sbjct: 122 FSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYK 181

Query: 434 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREA 493
           Q  +   +PN+  +   +    R+                GR        + A  VY E 
Sbjct: 182 QMIDLNCVPNVTTYNAFLNGLMRK----------------GR-------IADAQGVYEEM 218

Query: 494 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
           I AG  P V   S ++    L    D    L E +
Sbjct: 219 ISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAM 253


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 186/419 (44%), Gaps = 7/419 (1%)

Query: 42  SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNM 97
           ++ I L++DM+  GL   D   +    + C++    +EA   F+ +      P   T+N 
Sbjct: 232 AKIIALVQDMKCHGLAP-DLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNA 290

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L+ V   S+  + A +VL+ ++    +     Y +L++   + G ++    +  +MV+ G
Sbjct: 291 LLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKG 350

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I+P+V+TY  L+ G   AG+   A   +  MR    KP+   FNALI   G  G  +   
Sbjct: 351 IKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMV 410

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            V  E+  +V    PD +T   L+      G       V++ + +       + +   I+
Sbjct: 411 KVFKEI--KVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLIS 468

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
              + G ++ A + Y  M + GV PD    +A++      G  E + ++L E K+ G   
Sbjct: 469 AYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKP 528

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
             ++YSSL+ A +N +  ++   L E + S  +K     +  L+      D L +T    
Sbjct: 529 NEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAF 588

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            + +  G+ P+  T + +L    RK  V     +L+   E G+  +L  +  ++ M SR
Sbjct: 589 LEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSR 647



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 195/429 (45%), Gaps = 12/429 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + GR+S    LL ++E  G  ++D   +        + K  ++A + F  +      P
Sbjct: 154 LGKTGRVSRAASLLHNLEADGF-EVDVYGYTSLITAYANNKKYRDALKVFGKMKEVGCEP 212

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCAKSGKVDAMF 147
           TL T+N +++V    K      +++ LVQ+    GL  D   Y TLI+ C      +   
Sbjct: 213 TLITYNAILNVYG--KMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEAL 270

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++F E+  AG  P+  TY AL+D   K+ +  +A      M S + +P  V +N+L++A 
Sbjct: 271 DLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAY 330

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G ++ A  +  +M  +   + PD  T   L+    NAG+ + A EV++ + K   K 
Sbjct: 331 VRGGLLEDALVLKRKMVDK--GIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKP 388

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               +   I      G +E    V+ ++      PD V  + L+   G  G       + 
Sbjct: 389 NICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVF 448

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E K    +    ++++L+ A     ++ +A+  Y+ M    + P +ST NA++  L  G
Sbjct: 449 EEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARG 508

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
               ++ +VL++MK  G  PN +TYS LL A     +VE    L  +     +  + V+ 
Sbjct: 509 GLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLL 568

Query: 448 KCIIGMCSR 456
           K ++ + S+
Sbjct: 569 KTLVLVNSK 577



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 173/395 (43%), Gaps = 9/395 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
           +YN L+    R G + + + L   M  KG+      Y    + F N  K + A++     
Sbjct: 322 TYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEM 381

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+   P + TFN L+ +       E   +V + ++      D   + TL+    ++G  
Sbjct: 382 RKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMD 441

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
             +  VF EM  +   P   T+  LI    + G   +A  AY  M    V PD   +NA+
Sbjct: 442 SEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAV 501

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +    + G  +++  VLAEM        P+ +T  +L+ A AN  +V+R   + + I+  
Sbjct: 502 LATLARGGLWEQSEKVLAEMKD--GGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSG 559

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            IK    +    +   S+          + +  K+G+ PD    +A++   G    V  A
Sbjct: 560 TIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKA 619

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            EIL      G+++ + SY+SLM   S  +N+ K+ +++  +    ++P V + N +I A
Sbjct: 620 NEILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYA 679

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            C  D + +   ++ +MK     P+ +TY+  + A
Sbjct: 680 YCRNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAA 714



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 160/365 (43%), Gaps = 3/365 (0%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           S   +++S+   +     A  +L  ++  G + D   YT+LIT  A + K     +VF +
Sbjct: 145 SVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYTSLITAYANNKKYRDALKVFGK 204

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           M   G EP + TY A+++   K G   AK       M+   + PD   +N LI+ C    
Sbjct: 205 MKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGS 264

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             + A D+  E+  +V    PD +T  AL+     + +   A EV K +   + + +   
Sbjct: 265 LYEEALDLFEEI--KVAGFRPDAVTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVT 322

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   ++   + G  E A  +   M  KG+ PD    + L+    +AGK E A E+ +E +
Sbjct: 323 YNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMR 382

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G    I ++++L+    +   +++ +++++ +K  K  P + T N L+          
Sbjct: 383 KVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDS 442

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   V  +MK     P   T++ L+ A  R    +  +    +  E GV P+L  +  ++
Sbjct: 443 EVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVL 502

Query: 452 GMCSR 456
              +R
Sbjct: 503 ATLAR 507



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 133/298 (44%), Gaps = 12/298 (4%)

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV------VFNALITACGQSGAVDRAFDVL 220
            +I G     +   A   +  +R++N   DRV      V   +++  G++G V RA  +L
Sbjct: 111 GIIKGLGFNNKFDLALSLFDFIRTRN---DRVSLLNGSVIAVIVSILGKTGRVSRAASLL 167

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
             + A+   VD    T  +L+ A AN  +   A +V+  + +   + T   Y   +N   
Sbjct: 168 HNLEADGFEVDVYGYT--SLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYG 225

Query: 281 QTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
           + G  W    ++  DM   G+ PD    + LI         E A ++ +E K  G     
Sbjct: 226 KMGMPWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDA 285

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++Y++L+     ++  ++A+E+ + M+S   +P+V T N+L++A   G  L   + +   
Sbjct: 286 VTYNALLDVYGKSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRK 345

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           M   G+ P+  TY+ LL         E+ + +  + ++ G  PN+  F  +I M   R
Sbjct: 346 MVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDR 403



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/301 (20%), Positives = 129/301 (42%), Gaps = 12/301 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TFN L+S        + A    + + EAG+  D   Y  ++ T A+ G  +   +V
Sbjct: 458 PERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKV 517

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM + G +PN  TY +L+   A   +V +       + S  +K   V+   L+     
Sbjct: 518 LAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHAVLLKTLVL---- 573

Query: 210 SGAVDRAFDVLAE-----MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
              V+   D+L E     +      + PD  T  A++        V +A E+   +++  
Sbjct: 574 ---VNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESG 630

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +  +   Y   +   S+T ++  +  ++ ++  KG+ PD +  + +I        ++ A 
Sbjct: 631 LTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAK 690

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            I++E K       +++Y++ + A +    + +A+++  +M     KP  +T N+++   
Sbjct: 691 RIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWY 750

Query: 385 C 385
           C
Sbjct: 751 C 751


>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1025

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 130/560 (23%), Positives = 237/560 (42%), Gaps = 39/560 (6%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A  +   + +Y+ LI +G I+E     + M R  +      ++    + C+    + EAF
Sbjct: 417 ADGIDPDVITYSALINEGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVL-EAF 475

Query: 82  RFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             +  +V +   P + T+  L+           A + +  + E     D K   TL+   
Sbjct: 476 SVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGI 535

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G +D   ++  +MV   I P+ +TY  L+DG  K G+V  A     +M  K + PD 
Sbjct: 536 CKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDT 595

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           + +  L+      G V  A  +  E+  +   +  D I   ++M      GQ++    + 
Sbjct: 596 IAYTCLLNGLVNEGQVKAASYMFQEIICK-EGLYADCIAYNSMMNGYLKGGQINEIERLM 654

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + +H+  +  +   Y I ++   + G       +Y DM K+G+ PD V    LI      
Sbjct: 655 RNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEY 714

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G +E A + L++   +G+    +++  L+ A S       AL+L+ +MK + + P+  T 
Sbjct: 715 GLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTY 774

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
            A++  L   + L ++ E+L DM   GL P    Y  L+ A  R  D++    L    K 
Sbjct: 775 VAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKA 834

Query: 438 DGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 496
            GV+P+ V    I+ G+C     K   + E                   A++V+   + A
Sbjct: 835 LGVVPSEVAESSIVRGLC-----KCGKVEE-------------------AIIVFSSIMRA 870

Query: 497 GTIPTVEVVSKVLGCLQLPYNADIR---ERLVENLGVSADALKRSNLCSLIDGFGEYD-- 551
           G +PT+   + ++  L   +  D     ++L+E+ G+  D +  +    LI G       
Sbjct: 871 GMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYN---VLITGLCNKKCI 927

Query: 552 PRAFSLLEEAASFGIVPCVS 571
             A  L EE  S G++P ++
Sbjct: 928 CDALDLYEEMKSKGLLPNIT 947



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 190/422 (45%), Gaps = 10/422 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPNP 90
           + G + E +DL E M  + +L     Y       CK  K +  A    +      LVP+ 
Sbjct: 537 KHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVV-PALILLQMMLEKGLVPD- 594

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T++   +L  +    +    ++    ++ + GL ADC  Y +++    K G+++ +  + 
Sbjct: 595 TIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLM 654

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M    + P+  +Y  L+ G  K GQ+++    Y  M  + +KPD V +  LI    + 
Sbjct: 655 RNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEY 714

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G ++ A   L +M  E   V PD++    L+KA +   ++  A +++  +   ++  + +
Sbjct: 715 GLIEIAVKFLEKMVLE--GVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSK 772

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   +N   +    + +  +  DM + G+ P      ALI+     G ++ AFE+ ++ 
Sbjct: 773 TYVAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDM 832

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K  G+    ++ SS++         ++A+ ++  +    + PT++T   L+  LC   ++
Sbjct: 833 KALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKI 892

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                +   M+S GL  + +TY++L+     K  +   L L  + K  G++PN+  +  +
Sbjct: 893 DDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITL 952

Query: 451 IG 452
            G
Sbjct: 953 TG 954



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 143/631 (22%), Positives = 250/631 (39%), Gaps = 124/631 (19%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N L  QG++S+   +L+ M+   L   + V +    N    +   K A R      K   
Sbjct: 238 NSLCTQGKLSKAESMLQKMKNCRL--PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGI 295

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
              L T+N+++      K S  A+ +L+ ++E  L  D   Y TLI      GK++    
Sbjct: 296 EADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIY 355

Query: 149 VFHEMVNAGIEPNVHTYGALIDG--------------------------CAKAGQVAKAF 182
           +F++M+   ++P+V TY ALIDG                           +KA Q+ K  
Sbjct: 356 IFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCM 415

Query: 183 GAYGI-------------------------MRSKNVKPDRVVFNALITACGQSGAVDRAF 217
            A GI                         M    +  D   FN +I +  Q G V  AF
Sbjct: 416 LADGIDPDVITYSALINEGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAF 475

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE--VY------------------ 257
            V   M     P  PD  T G+L++     G + +A+E  VY                  
Sbjct: 476 SVYDNMVRHGWP--PDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLV 533

Query: 258 ----------------KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
                           KM+ + NI      YTI ++   + G    A  +   M +KG++
Sbjct: 534 GICKHGTLDEALDLCEKMVTR-NILPDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLV 592

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNWQKALE 360
           PD +  + L++   + G+V+AA  + QE    +G+    I+Y+S+M          +   
Sbjct: 593 PDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIER 652

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           L  +M   ++ P+ ++ N L+       QL +T+ +  DM   G+ P+ +TY +L+    
Sbjct: 653 LMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLC 712

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
               +E+ +  L +   +GV P+ + F  +I   S + + +  L   + S+         
Sbjct: 713 EYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNAL--QLFSY--------M 762

Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 540
           KW  ++           +   V +V+ ++    L  + +I   +VE    S    K ++ 
Sbjct: 763 KWLHMS---------PSSKTYVAMVNGLIRKNWLQQSYEILHDMVE----SGLQPKHTHY 809

Query: 541 CSLIDG---FGEYDPRAFSLLEEAASFGIVP 568
            +LI+     G+ D  AF L E+  + G+VP
Sbjct: 810 IALINAKCRVGDIDG-AFELKEDMKALGVVP 839



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 90/430 (20%), Positives = 166/430 (38%), Gaps = 20/430 (4%)

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           A+F      ++     N+ +   L++   K G+V  A  A   M     K      N ++
Sbjct: 143 AIFSSLLRTISRCDPTNLFSVDLLVNAYVKEGKVLDAAAAIFFMDECGFKASLFSCNNIL 202

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            A       +  +  L E      P+D    T   ++ +    G++ +A     M+ K  
Sbjct: 203 NALVGINKSEYVWLFLKESLDRKFPLDVT--TCNIVLNSLCTQGKLSKAES---MLQKMK 257

Query: 265 IKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
               P    Y   +N   + G  + A  + DDM K G+  D    + +ID      +   
Sbjct: 258 NCRLPNAVTYNTILNWYVKKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSAR 317

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A+ +L+  +   ++    SY++L+           A+ ++  M    LKP+V+T  ALI 
Sbjct: 318 AYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALID 377

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
             C   +  +   VL +M+  G+ P  ++ +  ++ C   D ++  ++  S    +G+I 
Sbjct: 378 GYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINEGMIA 437

Query: 443 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL-ALMVYREAIVAGTIPT 501
               FK        +Y     ++  V SFN        +   L A  VY   +  G  P 
Sbjct: 438 EAEQFK--------QYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPD 489

Query: 502 VEVVSKVL-GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLL 558
           +     +L G  Q  +    +E +V  L   A A+    L +L+ G  ++     A  L 
Sbjct: 490 ICTYGSLLRGLCQGGHLVQAKEFMVYLLE-KACAIDEKTLNTLLVGICKHGTLDEALDLC 548

Query: 559 EEAASFGIVP 568
           E+  +  I+P
Sbjct: 549 EKMVTRNILP 558


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 162/333 (48%), Gaps = 4/333 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           T+  F+++    A+  D   A ++ + +Q +   K    +YT +I    + G ++   E+
Sbjct: 45  TMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEI 104

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M    ++ NV+ + ALI+   + GQ   +      M+ + V+P+ + +N ++ AC +
Sbjct: 105 FEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKERVEPNLITYNTVLNACSK 164

Query: 210 SGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G   +   ++ A+M  E   + PD IT   L+ AC++ G V++A  V+K +++  +   
Sbjct: 165 GGLDWEGLLNLFAQMRHE--GIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVAD 222

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++  + +        +  +M  +G  PD    ++LI+    AG V  A  + +
Sbjct: 223 AVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFK 282

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + +  G +  + +YS+L+    N   +++   L+  MK +   PTV+T N+LI    +G 
Sbjct: 283 QMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGG 342

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
              +++ +  DM   G+ P+  TYS LL  C R
Sbjct: 343 YFQESINLFHDMVDSGVKPDDATYSALLSVCGR 375



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 118/543 (21%), Positives = 222/543 (40%), Gaps = 60/543 (11%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           +DV   ++++  LI    R G+    + LL  M +K  ++ + + +    N C       
Sbjct: 111 NDVKWNVYAFTALINAYGRNGQYEASLHLLARM-KKERVEPNLITYNTVLNACSKGGLDW 169

Query: 79  EAF-RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           E     F  + +    P L T+N L+S C+S    E A  V + + E+G+ AD   Y +L
Sbjct: 170 EGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSL 229

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           + T A S ++  + E+  EM + G  P++  Y +LI+  A AG V  A G +  M+    
Sbjct: 230 VDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGC 289

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            PD   ++ L+   G  G  ++   + ++M     P  P   T  +L++     G    +
Sbjct: 290 APDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTP--PTVATYNSLIQVFGEGGYFQES 347

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             ++  +    +K     Y+  ++ C + G    A  ++  M      P     + LI  
Sbjct: 348 INLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISS 407

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
            G     + A       +  G+   + +Y +L+   +    + +A      M     +  
Sbjct: 408 YGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAP 467

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILL-VACERKDDVEVGLML 431
           VS++N+++ A        + +E  S+++   G   +  T+  LL V C+        + L
Sbjct: 468 VSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCD--------MGL 519

Query: 432 LSQAKEDGVI-------PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 484
           L +AKE+ VI       P   ++  ++ +C RR                      +KW  
Sbjct: 520 LEEAKEEFVIIKETSKVPGARVYCLLLSLCVRR----------------------SKW-D 556

Query: 485 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 544
            A  +  E I AG +  V     V+G ++  Y+AD   ++VE    + D LK  ++   +
Sbjct: 557 YATQLLDEMIAAGGLHQV-----VVGIVRGTYDADFSWQVVE---YAFDGLKLRDMEESM 608

Query: 545 DGF 547
           D +
Sbjct: 609 DFY 611



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/425 (18%), Positives = 157/425 (36%), Gaps = 81/425 (19%)

Query: 26  SEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  +  YN LI      G +     + + M+R G    D   ++    +  +Q   ++  
Sbjct: 255 SPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAP-DVETYSTLLRIYGNQGCFEQVR 313

Query: 82  RFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F    +L   PT++T+N L+ V       + +  +   + ++G+K D   Y+ L++ C
Sbjct: 314 SLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVC 373

Query: 138 AKSGKVD-------------------------------AMFE----VFHEMVNAGIEPNV 162
            + G                                  AM++     ++ +  AG++P V
Sbjct: 374 GRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQV 433

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
             Y ALI G AK G   +A      M     +      N+++ A  + G  D A +  +E
Sbjct: 434 SAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSE 493

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           +  +    + D  T   L+    + G ++ A+E + +I + +      VY + ++ C + 
Sbjct: 494 LQQK-EGSEVDERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLLSLCVRR 552

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
             W++A  + D+M   G +                                 + VGI+  
Sbjct: 553 SKWDYATQLLDEMIAAGGL-------------------------------HQVVVGIVR- 580

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
               G      +WQ     ++ +K   ++ ++   NAL+  L   +Q  +   VL+D   
Sbjct: 581 ----GTYDADFSWQVVEYAFDGLKLRDMEESMDFYNALVELLVYCNQKARAARVLADAMQ 636

Query: 403 LGLCP 407
            G  P
Sbjct: 637 RGAFP 641


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 198/443 (44%), Gaps = 11/443 (2%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+   ++YN LI    R+    E   + ++M+  G  + DKV      +V    +   
Sbjct: 219 HGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGF-EPDKVTFNSLLDVYGKARRHD 277

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA    + +      P++ T+N L+S        E A  + + ++  G+K D   YTTLI
Sbjct: 278 EAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLI 337

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +   ++GK+DA    + EMV  G +PN+ TY ALI      G+  +    +   RS    
Sbjct: 338 SGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFV 397

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V +N L+   GQ+G       V  EM    +   P+  T  +L+ + +  G  D A 
Sbjct: 398 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGY--IPERDTYVSLISSYSRCGLFDLAM 455

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           ++YK + +  I      Y   ++  ++ G WE A  ++ +M ++   PDE   S+L+   
Sbjct: 456 QIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAY 515

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
            +A +++    +  +  ++ I        +L+   S   N  +A + +  ++  +    +
Sbjct: 516 ANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDI 575

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           + +NA+++       + K  ++LS MK   +  +  TY+ L+    R  D E    +L++
Sbjct: 576 NVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTE 635

Query: 435 AKEDGVIPNLVMFKCIIGMCSRR 457
            K  GV P+   +  +I    R+
Sbjct: 636 IKSSGVRPDRYSYNTVIYAYGRK 658



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 153/348 (43%), Gaps = 5/348 (1%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK-AGQV 178
           +A    D   YT L++  +++G+      VF  MV++G++P + TY  ++   +K A   
Sbjct: 147 DAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPW 206

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            +       M+   V PDR  +N LI+ C +      A  V  EM A     +PD +T  
Sbjct: 207 KEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKAS--GFEPDKVTFN 264

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           +L+     A + D A EV + + +     +   Y   I+   + G  E A ++  +M  K
Sbjct: 265 SLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVK 324

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD V  + LI     AGK++AA     E    G    + +Y++L+        + + 
Sbjct: 325 GMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEM 384

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           + +++  +S    P + T N L+          +   V  +MK  G  P   TY  L+ +
Sbjct: 385 MAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISS 444

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
             R    ++ + +  +  E G+ P++  +  ++   +R  R+E+A  L
Sbjct: 445 YSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 492



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 156/333 (46%), Gaps = 7/333 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSGKVDA 145
            P + T+N+++ V   SK +    +V+ LV   +E G+  D   Y TLI+ C +      
Sbjct: 186 QPAIVTYNVVLHVY--SKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKE 243

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             +VF EM  +G EP+  T+ +L+D   KA +  +A      M      P  V +N+LI+
Sbjct: 244 AAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLIS 303

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           +  + G +++A  +  EM  EV  + PD +T   L+     AG++D A   Y  + +   
Sbjct: 304 SYVKDGLLEQAVALKQEM--EVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGC 361

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     Y   I      G +    +V+D+    G +PD V  + L+   G  G       
Sbjct: 362 KPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSG 421

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + +E K  G      +Y SL+ + S    +  A+++Y+ M    + P VST NA+++AL 
Sbjct: 422 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALA 481

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            G +  +  ++ ++M+     P+  +YS LL A
Sbjct: 482 RGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHA 514



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 180/412 (43%), Gaps = 50/412 (12%)

Query: 35  LIRQGRISECIDLLEDMERKG----------LLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L R G+I   I   ++M R G          L+ M  V   +F        A+ + FR  
Sbjct: 340 LDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGV-RGKF----PEMMAVFDEFRSA 394

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
             VP+  + T+N L++V   +        V + +++AG   +   Y +LI++ ++ G  D
Sbjct: 395 GFVPD--IVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 452

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              +++  M+ AGI P+V TY A++   A+ G+  +A   +  M  ++ KPD   +++L+
Sbjct: 453 LAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLL 512

Query: 205 TACGQSGAVDR----AFDVLAE--------------MNAEVHPVDP-------------- 232
            A   +  +D+    + D+ +E              +N++V+ +                
Sbjct: 513 HAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCS 572

Query: 233 -DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
            D   + A++        V +  ++  ++ +  I  +   Y   ++  S+ GD E   ++
Sbjct: 573 LDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENI 632

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
             ++   GV PD    + +I   G  G+++ A  +  E K  G+   +++Y+  + +  +
Sbjct: 633 LTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVS 692

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
              +++A+EL  +M +   KP   T N+++   C   +L      +S++  L
Sbjct: 693 NSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQL 744


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 191/432 (44%), Gaps = 19/432 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPN 89
           I Q   +ECI  LE+M  +G       +      +C + +  + A RF +      + PN
Sbjct: 466 IGQMEQAECI--LEEMLSRGFSINPGAFTTIIHWLCMNSR-FESALRFLREMLLRNMRPN 522

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
             L T  ++  +C   K S+      RL+ E G  A+      LI    K+G +     +
Sbjct: 523 DGLLT-TLVGGLCKEGKHSDAVELWFRLL-EKGFGANLVTTNALIHGLCKTGNMQEAVRL 580

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M+  G   +  TY  LI GC K G+V + F   G M  + ++PD   +N LI    +
Sbjct: 581 LKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCR 640

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D A ++  E  +    + P+  T G ++     A +++   +++  +   N++   
Sbjct: 641 IGKLDEAVNLWNECKSR--DLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNS 698

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   I    + G+   A  ++DDM  KG+ P     S+LI    + G++E A  ++ E
Sbjct: 699 VVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDE 758

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            + +G+   ++ Y++L+G         K + + + M S  + P   T   +I        
Sbjct: 759 MRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGD 818

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMF 447
           +    ++L +M   G+ P+T+TY++L     ++  +E G +L     EDGV  N  L + 
Sbjct: 819 MKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGKLL----AEDGVGFNSPLFLI 874

Query: 448 KCIIGMCSRRYE 459
                 C+RR +
Sbjct: 875 HEAFRACTRRVD 886



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 190/438 (43%), Gaps = 9/438 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N   + G++ + I L  DME+ G+      Y+     +CK    + EAFRF  K+V    
Sbjct: 321 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCK-HGNLDEAFRFKEKMVKDGV 379

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N TL T+++L++     +    A  VL+   E G   +  +Y TLI    K G +     
Sbjct: 380 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 439

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +MV+ GI PN  T  ++I G  K GQ+ +A      M S+    +   F  +I    
Sbjct: 440 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLC 499

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +   + A   L EM   +  + P+   +  L+      G+   A E++  + +      
Sbjct: 500 MNSRFESALRFLREM--LLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGAN 557

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
                  I+   +TG+ + A  +   M ++G + D++  + LI      GKVE  F++  
Sbjct: 558 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 617

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   QGI     +Y+ L+          +A+ L+   KS  L P V T   +I   C  D
Sbjct: 618 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 677

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ +  ++ +++ +  L  N++ Y+ L+ A  R  +      L    +  G+ P    + 
Sbjct: 678 KIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYS 737

Query: 449 CII-GMCS-RRYEKARTL 464
            +I GMC+  R E A+ L
Sbjct: 738 SLIHGMCNIGRMEDAKCL 755



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/452 (22%), Positives = 196/452 (43%), Gaps = 49/452 (10%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           VY  +F NV       + A   F+ + N    PT+ T   L+S    + + E ++ V   
Sbjct: 250 VYCTQFRNV-----GFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFET 304

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +++ G+  D  L++T I    K GKV+   ++F +M   G+ PNV TY  LI G  K G 
Sbjct: 305 MRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGN 363

Query: 178 VAKAFG--------------------AYGIMR---------------SKNVKPDRVVFNA 202
           + +AF                       G+M+                K   P+ VV+N 
Sbjct: 364 LDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNT 423

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    + G +  A  +  +M ++   ++P+ +T+ ++++     GQ+++A  + + +  
Sbjct: 424 LIDGYCKMGNLGDALRIRGDMVSK--GINPNSVTLNSIIQGFCKIGQMEQAECILEEMLS 481

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                 P  +T  I+       +E A     +M  + + P++  L+ L+      GK   
Sbjct: 482 RGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSD 541

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A E+      +G    +++ ++L+       N Q+A+ L + M          T N LI+
Sbjct: 542 AVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLIS 601

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
             C   ++ +  ++  +M   G+ P+T TY++L+    R   ++  + L ++ K   ++P
Sbjct: 602 GCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVP 661

Query: 443 NLVMFKCII-GMC-SRRYEKARTLNEHVLSFN 472
           N+  +  +I G C + + E+   L   +L+ N
Sbjct: 662 NVYTYGVMIDGYCKADKIEEGEKLFTELLTQN 693


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 164/342 (47%), Gaps = 10/342 (2%)

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           +  A Q+LR V    ++ +  +Y T+I +  K   V+  F+++ EMV+ GI P+V TY A
Sbjct: 159 ARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSA 218

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           LI G    G++  A   +  M  +N+KPD   FN L+    + G +     V A M  + 
Sbjct: 219 LISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQ- 277

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + P+ +T  +LM       QV++A  ++  + +  +    + Y I IN   +    + 
Sbjct: 278 -GIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDE 336

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A +++  M  K +IP+ V  ++LID    +GK+  A +++ E  ++G+   II+YSS++ 
Sbjct: 337 AMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILD 396

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPT--------VSTMNALITALCDGDQLPKTMEVLSD 399
           A        KA+ L   +K    +          V     +I   C      + + +LS 
Sbjct: 397 ALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSK 456

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           M+  G  P+  TY I++++  +KD+ ++   LL +    G++
Sbjct: 457 MEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLL 498



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 170/365 (46%), Gaps = 19/365 (5%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P +  F  ++           A  + R ++  G+ ++      LI   ++ G+    F
Sbjct: 56  PTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSF 115

Query: 148 EVFHEMVNAGIEPNVHT-------------YGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            VF  ++  G +PNV T             YG LI+G  K GQ   A      +  K V+
Sbjct: 116 SVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQ 175

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ V++N +I +  +   V+ AFD+ +EM +E   + PD +T  AL+      G++  A 
Sbjct: 176 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSE--GISPDVVTYSALISGFFIVGKLKDAI 233

Query: 255 EVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           +++  +   NIK  P+VYT  I ++   + G  +   +V+  M K+G+ P+ V   +L+D
Sbjct: 234 DLFNKMILENIK--PDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMD 291

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                 +V  A  I       G++    SY+ ++      K   +A+ L++ M    + P
Sbjct: 292 GYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIP 351

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V T  +LI  LC   ++   ++++ +M   G+ P+ ITYS +L A  +   V+  + LL
Sbjct: 352 NVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALL 411

Query: 433 SQAKE 437
           ++ K+
Sbjct: 412 TKLKD 416



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 9/214 (4%)

Query: 22  AHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           +  +S  + +Y+ LI      G++ + IDL   M  + +      ++      CK  K +
Sbjct: 206 SEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGK-M 264

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           KE    F ++      P + T+  LM      K    A  +   + + G+  D + Y  +
Sbjct: 265 KEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIM 324

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    K  KVD    +F +M    I PNV TY +LIDG  K+G+++ A      M  + V
Sbjct: 325 INGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGV 384

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
            PD + +++++ A  ++  VD+A  +L ++  +V
Sbjct: 385 PPDIITYSSILDALCKNHQVDKAIALLTKLKDQV 418


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 157/364 (43%), Gaps = 41/364 (11%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  ++     +G++DA   +  EM    +EP+ +TY  LI G    G+ A A      M 
Sbjct: 3   YNAMVAGYCGAGQLDAARRLVAEM---PVEPDAYTYNTLIRGLCGRGRTANALAVLDEML 59

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            +   PD V +  L+ A  +     +A  +L EM  +     PD +T   ++      G+
Sbjct: 60  RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDK--GCTPDIVTYNVVVNGICQEGR 117

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           VD A E  K +  Y  +     Y I +        WE A  +  +M +KG  P+ V  + 
Sbjct: 118 VDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNM 177

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI F    G VE A E+L++    G +   +SY+ L+ A    K   KA+   + M S  
Sbjct: 178 LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 237

Query: 370 LKPTVSTMNALITALC-------------------------------DG----DQLPKTM 394
             P + + N L+TALC                               DG     +  + +
Sbjct: 238 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 297

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           E+L++M S GL P+ ITYS +     R+D +E  +    + ++ G+ PN V++  II G+
Sbjct: 298 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGL 357

Query: 454 CSRR 457
           C RR
Sbjct: 358 CKRR 361



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 181/391 (46%), Gaps = 6/391 (1%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
           Y+A     C + + +  A R    +P  P   T+N L+        +  A  VL  +   
Sbjct: 3   YNAMVAGYCGAGQ-LDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRR 61

Query: 122 GLKADCKLYTTLI-TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
               D   YT L+  TC +SG   AM ++  EM + G  P++ TY  +++G  + G+V  
Sbjct: 62  RCVPDVVTYTILLEATCKRSGYKQAM-KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDD 120

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A      + S   +P+ V +N ++     +   + A +++ EM  +  P  P+ +T   L
Sbjct: 121 AIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP--PNVVTFNML 178

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           +      G V+ A EV + I KY        Y   ++   +    + A +  D M  +G 
Sbjct: 179 ISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGC 238

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            PD V  + L+     +G+V+ A E+L + K++G +  +ISY++++   + A   ++ALE
Sbjct: 239 YPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALE 298

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           L   M S  L+P + T + +   LC  D++   +     ++ +G+ PNT+ Y+ +++   
Sbjct: 299 LLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLC 358

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           ++ +    + L +    +G +PN   +  +I
Sbjct: 359 KRRETHSAIDLFAYMIGNGCMPNESTYTILI 389



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 11/265 (4%)

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           + +NA++     +G +D A  ++AEM     PV+PD  T   L++     G+   A  V 
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEM-----PVEPDAYTYNTLIRGLCGRGRTANALAVL 55

Query: 258 -KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            +M+ +   +  P+V  YTI +    +   ++ A  + D+M  KG  PD V  + +++  
Sbjct: 56  DEMLRR---RCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGI 112

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G+V+ A E L+   + G     +SY+ ++     A+ W+ A EL   M      P V
Sbjct: 113 CQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 172

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI+ LC    +   +EVL  +   G  PN+++Y+ LL A  ++  ++  +  L  
Sbjct: 173 VTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDL 232

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYE 459
               G  P++V +  ++    R  E
Sbjct: 233 MVSRGCYPDIVSYNTLLTALCRSGE 257



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 114/234 (48%), Gaps = 11/234 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI    R+G +   +++LE + + G       Y+      CK QK + +A  F  L
Sbjct: 174 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCK-QKKMDKAMAFLDL 232

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P + ++N L++    S + + A ++L  +++ G       Y T+I    K+GK
Sbjct: 233 MVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGK 292

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                E+ +EMV+ G++P++ TY  +  G  +  ++  A  A+G ++   ++P+ V++NA
Sbjct: 293 TKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNA 352

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           +I    +      A D+ A M    +   P+  T   L++  A  G +  AR++
Sbjct: 353 IILGLCKRRETHSAIDLFAYMIG--NGCMPNESTYTILIEGLAYEGLIKEARDL 404


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 162/333 (48%), Gaps = 4/333 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           T+  F+++    A+  D   A ++ + +Q +   K    +YT +I    + G ++   E+
Sbjct: 45  TMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEI 104

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M    ++ NV+ + ALI+   + GQ   +      M+ + V+P+ + +N ++ AC +
Sbjct: 105 FEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSK 164

Query: 210 SGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G   +   ++ A+M  E   + PD IT   L+ AC++ G V++A  V+K +++  +   
Sbjct: 165 GGLDWEGLLNLFAQMRHE--GIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVAD 222

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++  + +        +  +M  +G  PD    ++LI+    AG V  A  + +
Sbjct: 223 AVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFK 282

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + +  G +  + +YS+L+    N   +++   L+  MK +   PTV+T N+LI    +G 
Sbjct: 283 QMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGG 342

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
              +++ +  DM   G+ P+  TYS LL  C R
Sbjct: 343 YFQESINLFHDMVDSGVKPDDATYSALLSVCGR 375



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 118/543 (21%), Positives = 222/543 (40%), Gaps = 60/543 (11%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           +DV   ++++  LI    R G+    + LL  M +K  ++ + + +    N C       
Sbjct: 111 NDVKWNVYAFTALINAYGRNGQYEASLHLLARM-KKEQVEPNLITYNTVLNACSKGGLDW 169

Query: 79  EAF-RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           E     F  + +    P L T+N L+S C+S    E A  V + + E+G+ AD   Y +L
Sbjct: 170 EGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSL 229

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           + T A S ++  + E+  EM + G  P++  Y +LI+  A AG V  A G +  M+    
Sbjct: 230 VDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGC 289

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            PD   ++ L+   G  G  ++   + ++M     P  P   T  +L++     G    +
Sbjct: 290 APDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTP--PTVATYNSLIQVFGEGGYFQES 347

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             ++  +    +K     Y+  ++ C + G    A  ++  M      P     + LI  
Sbjct: 348 INLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISS 407

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
            G     + A       +  G+   + +Y +L+   +    + +A      M     +  
Sbjct: 408 YGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAP 467

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILL-VACERKDDVEVGLML 431
           VS++N+++ A        + +E  S+++   G   +  T+  LL V C+        + L
Sbjct: 468 VSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCD--------MGL 519

Query: 432 LSQAKEDGVI-------PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 484
           L +AKE+ VI       P   ++  ++ +C RR                      +KW  
Sbjct: 520 LEEAKEEFVIIKETSKVPGARVYCLLLSLCVRR----------------------SKW-D 556

Query: 485 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 544
            A  +  E I AG +  V     V+G ++  Y+AD   ++VE    + D LK  ++   +
Sbjct: 557 YATQLLDEMIAAGGLHQV-----VVGIVRGTYDADFSWQVVE---YAFDGLKLRDMEESM 608

Query: 545 DGF 547
           D +
Sbjct: 609 DFY 611



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/419 (18%), Positives = 154/419 (36%), Gaps = 81/419 (19%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-- 85
           YN LI      G +     + + M+R G    D   ++    +  +Q   ++    F   
Sbjct: 261 YNSLIEAYADAGNVHGAAGVFKQMQRGGCAP-DVETYSTLLRIYGNQGCFEQVRSLFSDM 319

Query: 86  --LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             L   PT++T+N L+ V       + +  +   + ++G+K D   Y+ L++ C + G  
Sbjct: 320 KDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLT 379

Query: 144 D-------------------------------AMFE----VFHEMVNAGIEPNVHTYGAL 168
                                           AM++     ++ +  AG++P V  Y AL
Sbjct: 380 REAAKIHQHMLTNESTPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDAL 439

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I G AK G   +A      M     +      N+++ A  + G  D A +  +E+  +  
Sbjct: 440 IQGYAKGGLYVEAGSTLYAMNKAGFQAPVSSVNSVMEAYSKVGLHDEALEFFSELQQK-E 498

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
             + D  T   L+    + G ++ A+E + +I + +      VY + ++ C +   W++A
Sbjct: 499 GSEVDERTHETLLGVYCDMGLLEEAKEEFVIIKETSKVPGARVYCLLLSLCVRRSKWDYA 558

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             + D+M   G +                                 + VGI+      G 
Sbjct: 559 TQLLDEMIAAGGL-------------------------------HQVVVGIVR-----GT 582

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                +WQ     ++ +K   ++ ++   NAL+  L   +Q  +   VL+D    G  P
Sbjct: 583 YDADFSWQVVEYAFDGLKLRDMEESMDFYNALVELLVYCNQKARAARVLADAMQRGAFP 641


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 113/484 (23%), Positives = 210/484 (43%), Gaps = 34/484 (7%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----------- 66
           ++++A +  E  +   +++R G + E    LE+M          VYH             
Sbjct: 95  NSSFALEDVESNNHLRQMVRTGELEEGFKFLENM----------VYHGNVPDIIPCTTLI 144

Query: 67  --FFNVCKSQKAIK--EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
             F  + K++KA K  E       VP+  + T+N+++S    + +   A  VL       
Sbjct: 145 RGFCRLGKTRKAAKILEILEGSGAVPD--VITYNVMISGYCKAGEINNALSVL---DRMS 199

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           +  D   Y T++ +   SGK+    EV   M+     P+V TY  LI+   +   V  A 
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
                MR +   PD V +N L+    + G +D A   L +M +      P+ IT   +++
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS--GCQPNVITHNIILR 317

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
           +  + G+   A ++   + +     +   + I IN   + G    A  + + M + G  P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           + +  + L+       K++ A E L+   ++G    I++Y++++ A       + A+E+ 
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
             + S    P + T N +I  L    +  K +++L +M++  L P+TITYS L+    R+
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMCSRRYEKARTLNEHVLSFNSGRPQIENK 481
             V+  +    + +  G+ PN V F  I +G+C  R +  R ++  V   N G    E  
Sbjct: 498 GKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSR-QTDRAIDFLVFMINRGCKPNETS 556

Query: 482 WTSL 485
           +T L
Sbjct: 557 YTIL 560



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 197/419 (47%), Gaps = 10/419 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           R G+  +   +LE +E  G +     Y+      CK+ +         ++  +P + T+N
Sbjct: 149 RLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYN 208

Query: 97  -MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-TTCAKSGKVDAMFEVFHEMV 154
            +L S+C S K  + A +VL  + +     D   YT LI  TC  SG   AM ++  EM 
Sbjct: 209 TILRSLCDSGKLKQ-AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM-KLLDEMR 266

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           + G  P+V TY  L++G  K G++ +A      M S   +P+ +  N ++ +   +G   
Sbjct: 267 DRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWM 326

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A  +LA+M  +     P  +T   L+      G + RA ++ + + ++  +     Y  
Sbjct: 327 DAEKLLADMLRK--GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            ++   +    + A    + M  +G  PD V  + ++      GKVE A EIL +  ++G
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
            S  +I+Y++++   + A    KA++L + M++  LKP   T ++L+  L    ++ + +
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504

Query: 395 EVLSDMKSLGLCPNTITY-SILLVACE-RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   + + +G+ PN +T+ SI+L  C+ R+ D  +  ++    +  G  PN   +  +I
Sbjct: 505 KFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINR--GCKPNETSYTILI 561



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 127/279 (45%), Gaps = 11/279 (3%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N ++R     GR  +   LL DM RKG       ++     +C+ +  +  A    + 
Sbjct: 311 THNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR-KGLLGRAIDILEK 369

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +P     P   ++N L+      K  + A + L  +   G   D   Y T++T   K GK
Sbjct: 370 MPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGK 429

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           V+   E+ +++ + G  P + TY  +IDG AKAG+  KA      MR+K++KPD + +++
Sbjct: 430 VEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSS 489

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L+    + G VD A     E   E   + P+ +T  ++M     + Q DRA +    +  
Sbjct: 490 LVGGLSREGKVDEAIKFFHEF--ERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMIN 547

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
              K     YTI I   +  G  + A  + +++  KG++
Sbjct: 548 RGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 156/343 (45%), Gaps = 37/343 (10%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E   ++ + +   G + D  L  T +    K+G V+    +F ++   G  P+V +Y  L
Sbjct: 6   EDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSIL 65

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I G  KAGQ  +    +  M+ +    D   +NA++    +SG VD+A++ L EM  +V 
Sbjct: 66  IHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEM--KVK 123

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            V P   T G+++   A   ++DR  E Y +                             
Sbjct: 124 HVPPTVATYGSIIDGLA---KIDRLDEAYML----------------------------- 151

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
              +++   KG+  + +  S+LID  G  G+++ A+ IL+E   +G++  + +++SLM A
Sbjct: 152 ---FEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDA 208

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              A+   +AL  ++ MK +K  P   T + LI  LC   +  K      +M+  GL PN
Sbjct: 209 LVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPN 268

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +TY+ ++    +  ++     L  + K +G IP+   F  +I
Sbjct: 269 VVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAASFNALI 311



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 173/360 (48%), Gaps = 19/360 (5%)

Query: 38  QGRISECIDLLEDMERKG------LLD--MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89
            GR  +   + ++M R+G      LL+  MD V+ A      +  +AI E  + +  +P+
Sbjct: 2   HGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKA---GDVEKGRAIFEDIKGYGFLPD 58

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
             + ++++L+     +  +     +   +++ G   D + Y  ++    KSGKVD  +E 
Sbjct: 59  --VRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEA 116

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM    + P V TYG++IDG AK  ++ +A+  +   +SK ++ + +V+++LI   G+
Sbjct: 117 LEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGK 176

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D A+ +L EM  +   + P+  T  +LM A   A +++ A   ++ + +       
Sbjct: 177 VGRIDEAYLILEEMMKK--GLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNT 234

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+I IN   +   +  A   + +M K+G++P+ V  + +I      G +  A  + + 
Sbjct: 235 YTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFER 294

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALITALC 385
            K  G      S+++L+   S+A    +A  ++E  +     I +K  +S ++AL  A C
Sbjct: 295 FKANGGIPDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRINVKACISLLDALNKAEC 354


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 190/469 (40%), Gaps = 52/469 (11%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           H  ++ LHS  R +R               R  L   + V  A   +   S +A  +AFR
Sbjct: 148 HLAAQLLHSLRRRVRV--------------RPSLQAANAVLSALARSPSTSPQASLDAFR 193

Query: 83  -FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
               L  +P   TFN+L+    S      A   L  +Q  GL  D   Y TL+    + G
Sbjct: 194 SIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKG 253

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +     +   M   G+ P   TY  L+   A+ G + +A      M +   +PD   +N
Sbjct: 254 MLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYN 313

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            L     Q+G VD AF +  EM   +  + PD +T   L  AC        A  + + + 
Sbjct: 314 VLAAGLCQAGKVDEAFRLKDEME-RLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMR 372

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +K T   + I I    + G+ E A    + M   G+ PD +  + LI     AG + 
Sbjct: 373 EKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIA 432

Query: 322 AAFEILQEAKNQGISVGI-----------------------------------ISYSSLM 346
            A+ ++ E   +G+ +                                     +SY ++M
Sbjct: 433 KAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVM 492

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
            A     N + AL L++ M   KL P++ST N LI  L    +L + ++ L+++   GL 
Sbjct: 493 AAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLV 552

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           P+  TY+I++ A  ++ D+E      ++  E+   P++V    ++ G+C
Sbjct: 553 PDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLC 601



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 189/424 (44%), Gaps = 20/424 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G I +   ++E M   G       Y+     +C++ K + EAFR    
Sbjct: 276 TYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGK-VDEAFRLKDE 334

Query: 87  VPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +       P + T+N L   C   + S  A ++L  ++E G+KA    +  +I    K G
Sbjct: 335 MERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDG 394

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +++      ++M + G+ P+V TY  LI    KAG +AKA+     M  + +K D    N
Sbjct: 395 ELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLN 454

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMI 260
            ++    +    + A  +L   +       PD ++ G +M A       + A  ++ +MI
Sbjct: 455 TVLYNLCKEKRYEEAQGLL--QSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMI 512

Query: 261 HKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            K   K TP +  Y   I   S+ G  + A    +++ +KG++PD+   + +I      G
Sbjct: 513 EK---KLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEG 569

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            +E AF+   +         +++ ++LM G C N K   KAL+L+E       K  V T 
Sbjct: 570 DLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGK-LDKALKLFESWVEKGKKVDVITY 628

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N LI  +C    +   +   +DM++ GL P+  TY+++L A       E    +L +  E
Sbjct: 629 NTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAE 688

Query: 438 DGVI 441
            G +
Sbjct: 689 SGTL 692



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 126/313 (40%), Gaps = 47/313 (15%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVY---HARFFNVCKSQKAIKEAFRFFKLVP 88
           YN L ++ R  E   LL+   ++G +  +  Y    A +F    S+ A++      +   
Sbjct: 458 YN-LCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKL 516

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P++ST+N L+   +     + A   L  + E GL  D   Y  +I    K G ++  F+
Sbjct: 517 TPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQ 576

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
             ++MV    +P+V T   L++G    G++ KA   +     K  K D + +N LI    
Sbjct: 577 FHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMC 636

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G VD A    A+M  E   + PD  T   ++ A + AG   R  E   M+HK    GT
Sbjct: 637 KDGDVDTALHFFADM--EARGLQPDAFTYNVVLSALSEAG---RTEEAQNMLHKLAESGT 691

Query: 269 --------------------------------------PEVYTIAINCCSQTGDWEFACS 290
                                                  E YT  +N    +G ++ A +
Sbjct: 692 LSQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKA 751

Query: 291 VYDDMTKKGVIPD 303
           + D+M +KG+  D
Sbjct: 752 ILDEMMQKGMSVD 764



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%)

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           A S + + Q +L+ +  + +++L P   T N L+   C    L   +  LS M+  GL P
Sbjct: 178 ARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSP 237

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           + +TY+ LL A  RK  +     LL++ K+DGV P    +  ++   +R
Sbjct: 238 DAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYAR 286


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 198/443 (44%), Gaps = 11/443 (2%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+   ++YN LI    R+    E   + ++M+  G  + DKV      +V    +   
Sbjct: 237 HGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGF-EPDKVTFNSLLDVYGKARRHD 295

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA    + +      P++ T+N L+S        E A  + + ++  G+K D   YTTLI
Sbjct: 296 EAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLI 355

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +   ++GK+DA    + EMV  G +PN+ TY ALI      G+  +    +   RS    
Sbjct: 356 SGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFV 415

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V +N L+   GQ+G       V  EM    +   P+  T  +L+ + +  G  D A 
Sbjct: 416 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGY--IPERDTYVSLISSYSRCGLFDLAM 473

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           ++YK + +  I      Y   ++  ++ G WE A  ++ +M ++   PDE   S+L+   
Sbjct: 474 QIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAY 533

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
            +A +++    +  +  ++ I        +L+   S   N  +A + +  ++  +    +
Sbjct: 534 ANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDI 593

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           + +NA+++       + K  ++LS MK   +  +  TY+ L+    R  D E    +L++
Sbjct: 594 NVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTE 653

Query: 435 AKEDGVIPNLVMFKCIIGMCSRR 457
            K  GV P+   +  +I    R+
Sbjct: 654 IKSSGVRPDRYSYNTVIYAYGRK 676



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 153/348 (43%), Gaps = 5/348 (1%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK-AGQV 178
           +A    D   YT L++  +++G+      VF  MV++G++P + TY  ++   +K A   
Sbjct: 165 DAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPW 224

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            +       M+   V PDR  +N LI+ C +      A  V  EM A     +PD +T  
Sbjct: 225 KEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKAS--GFEPDKVTFN 282

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           +L+     A + D A EV + + +     +   Y   I+   + G  E A ++  +M  K
Sbjct: 283 SLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVK 342

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD V  + LI     AGK++AA     E    G    + +Y++L+        + + 
Sbjct: 343 GMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEM 402

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           + +++  +S    P + T N L+          +   V  +MK  G  P   TY  L+ +
Sbjct: 403 MAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISS 462

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
             R    ++ + +  +  E G+ P++  +  ++   +R  R+E+A  L
Sbjct: 463 YSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 510



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 156/333 (46%), Gaps = 7/333 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSGKVDA 145
            P + T+N+++ V   SK +    +V+ LV   +E G+  D   Y TLI+ C +      
Sbjct: 204 QPAIVTYNVVLHVY--SKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKE 261

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             +VF EM  +G EP+  T+ +L+D   KA +  +A      M      P  V +N+LI+
Sbjct: 262 AAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLIS 321

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           +  + G +++A  +  EM  EV  + PD +T   L+     AG++D A   Y  + +   
Sbjct: 322 SYVKDGLLEQAVALKQEM--EVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGC 379

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     Y   I      G +    +V+D+    G +PD V  + L+   G  G       
Sbjct: 380 KPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSG 439

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + +E K  G      +Y SL+ + S    +  A+++Y+ M    + P VST NA+++AL 
Sbjct: 440 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALA 499

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            G +  +  ++ ++M+     P+  +YS LL A
Sbjct: 500 RGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHA 532



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 180/412 (43%), Gaps = 50/412 (12%)

Query: 35  LIRQGRISECIDLLEDMERKG----------LLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L R G+I   I   ++M R G          L+ M  V   +F        A+ + FR  
Sbjct: 358 LDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGV-RGKF----PEMMAVFDEFRSA 412

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
             VP+  + T+N L++V   +        V + +++AG   +   Y +LI++ ++ G  D
Sbjct: 413 GFVPD--IVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 470

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              +++  M+ AGI P+V TY A++   A+ G+  +A   +  M  ++ KPD   +++L+
Sbjct: 471 LAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLL 530

Query: 205 TACGQSGAVDR----AFDVLAE--------------MNAEVHPVDP-------------- 232
            A   +  +D+    + D+ +E              +N++V+ +                
Sbjct: 531 HAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCS 590

Query: 233 -DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
            D   + A++        V +  ++  ++ +  I  +   Y   ++  S+ GD E   ++
Sbjct: 591 LDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENI 650

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
             ++   GV PD    + +I   G  G+++ A  +  E K  G+   +++Y+  + +  +
Sbjct: 651 LTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVS 710

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
              +++A+EL  +M +   KP   T N+++   C   +L      +S++  L
Sbjct: 711 NSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQL 762


>gi|168038568|ref|XP_001771772.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676903|gb|EDQ63380.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 614

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 183/397 (46%), Gaps = 25/397 (6%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEV 149
           T+   N  +S C+S  +   A +V+  ++ AG+ A +   Y  LIT C +  + D    +
Sbjct: 150 TIWRINRSISRCSSLSE---ALEVVNEMKAAGVNAANEGTYLALITVCRRQQEGDRALSI 206

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M +AG+ P+V TY  LI  C +A ++  A+     M +  VKPD V + AL+    +
Sbjct: 207 YEAMKDAGVIPSVLTYNTLISCCQQAKRLEDAYRIKAEMEASGVKPDVVTYTALMALVVK 266

Query: 210 SGA----------VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +G           +++A  +  EM  +   + PD IT   LM A A A   ++  E+Y+ 
Sbjct: 267 TGPYRGRSSPAQRLEKALQLYQEM--QDRNIRPDSITYNTLMFAGAQAKVPEKVLEIYRT 324

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-- 317
           +    +      ++  +   +  G  + A  V+++M   GV P     + LI+    A  
Sbjct: 325 MVAAGVPPDQFTFSFILESAAAGGRLKVALEVFEEMRAAGVAPKTNTFNFLIEACASAPY 384

Query: 318 GKVEAAFEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHM--KSIKLKPTV 374
              E A+ + +E K  +G+     +Y+ L+ A     +  +AL+ YE M     +   T 
Sbjct: 385 PDAEKAWALFEEMKTIEGVVPNAQTYNHLITASCKGGDNARALKAYELMWNSGYQRAVTT 444

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           +T N LI +    + L   +++   M   G  P+ ITYS L+VAC R DD+E  L +  +
Sbjct: 445 ATFNKLIQSASQTEGLESALKMYRKMLDAGYKPDAITYSTLVVACNRADDLEQALSISQE 504

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF 471
            +  GV PN V+   +I      Y +A    + V +F
Sbjct: 505 MEGLGVKPNQVVQHSLIAA----YGQAGQWEDAVATF 537



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 192/419 (45%), Gaps = 26/419 (6%)

Query: 33  NRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           NR I R   +SE ++++ +M+  G+   ++  +     VC+ Q+    A   ++ + +  
Sbjct: 155 NRSISRCSSLSEALEVVNEMKAAGVNAANEGTYLALITVCRRQQEGDRALSIYEAMKDAG 214

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------ 141
             P++ T+N L+S C  +K  E A+++   ++ +G+K D   YT L+    K+G      
Sbjct: 215 VIPSVLTYNTLISCCQQAKRLEDAYRIKAEMEASGVKPDVVTYTALMALVVKTGPYRGRS 274

Query: 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
               +++   +++ EM +  I P+  TY  L+   A+A    K    Y  M +  V PD+
Sbjct: 275 SPAQRLEKALQLYQEMQDRNIRPDSITYNTLMFAGAQAKVPEKVLEIYRTMVAAGVPPDQ 334

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             F+ ++ +    G +  A +V  EM A    V P   T   L++ACA+A   D A + +
Sbjct: 335 FTFSFILESAAAGGRLKVALEVFEEMRA--AGVAPKTNTFNFLIEACASAPYPD-AEKAW 391

Query: 258 KMIHKY-NIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSAL 310
            +  +   I+G     + Y   I    + GD   A   Y+ M   G    +    F + L
Sbjct: 392 ALFEEMKTIEGVVPNAQTYNHLITASCKGGDNARALKAYELMWNSGYQRAVTTATF-NKL 450

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I  A     +E+A ++ ++  + G     I+YS+L+ AC+ A + ++AL + + M+ + +
Sbjct: 451 IQSASQTEGLESALKMYRKMLDAGYKPDAITYSTLVVACNRADDLEQALSISQEMEGLGV 510

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           KP     ++LI A     Q    +     ++       +++YSI+  AC  K   E  L
Sbjct: 511 KPNQVVQHSLIAAYGQAGQWEDAVATFRVLQEGEEQLTSVSYSIIFDACFGKGGAEAVL 569



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 179/398 (44%), Gaps = 44/398 (11%)

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            N  I+ C    ++  A +V+ EM A  V+  +    T  AL+  C    + DRA  +Y+
Sbjct: 154 INRSISRCS---SLSEALEVVNEMKAAGVNAANEG--TYLALITVCRRQQEGDRALSIYE 208

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +    +  +   Y   I+CC Q    E A  +  +M   GV PD V  +AL+      G
Sbjct: 209 AMKDAGVIPSVLTYNTLISCCQQAKRLEDAYRIKAEMEASGVKPDVVTYTALMALVVKTG 268

Query: 319 ----------KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
                     ++E A ++ QE +++ I    I+Y++LM A + AK  +K LE+Y  M + 
Sbjct: 269 PYRGRSSPAQRLEKALQLYQEMQDRNIRPDSITYNTLMFAGAQAKVPEKVLEIYRTMVAA 328

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK--DDVE 426
            + P   T + ++ +   G +L   +EV  +M++ G+ P T T++ L+ AC      D E
Sbjct: 329 GVPPDQFTFSFILESAAAGGRLKVALEVFEEMRAAGVAPKTNTFNFLIEACASAPYPDAE 388

Query: 427 VGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG----------- 474
               L  + K  +GV+PN   +  +I    +  + AR L  + L +NSG           
Sbjct: 389 KAWALFEEMKTIEGVVPNAQTYNHLITASCKGGDNARALKAYELMWNSGYQRAVTTATFN 448

Query: 475 ---RPQIENKWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQLPYNADIRERL-----V 525
              +   + +    AL +YR+ + AG  P  +   + V+ C +     D+ + L     +
Sbjct: 449 KLIQSASQTEGLESALKMYRKMLDAGYKPDAITYSTLVVACNRAD---DLEQALSISQEM 505

Query: 526 ENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEA 561
           E LGV  + + + +L +     G+++     F +L+E 
Sbjct: 506 EGLGVKPNQVVQHSLIAAYGQAGQWEDAVATFRVLQEG 543



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 156/342 (45%), Gaps = 26/342 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---------QKAI 77
           +YN LI    +  R+ +   +  +ME  G+      Y A    V K+          + +
Sbjct: 221 TYNTLISCCQQAKRLEDAYRIKAEMEASGVKPDVVTYTALMALVVKTGPYRGRSSPAQRL 280

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           ++A + ++ + +    P   T+N LM   A +K  E   ++ R +  AG+  D   ++ +
Sbjct: 281 EKALQLYQEMQDRNIRPDSITYNTLMFAGAQAKVPEKVLEIYRTMVAAGVPPDQFTFSFI 340

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG--QVAKAFGAYGIMRS- 190
           + + A  G++    EVF EM  AG+ P  +T+  LI+ CA A      KA+  +  M++ 
Sbjct: 341 LESAAAGGRLKVALEVFEEMRAAGVAPKTNTFNFLIEACASAPYPDAEKAWALFEEMKTI 400

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           + V P+   +N LITA  + G   RA      M    +       T   L+++ +    +
Sbjct: 401 EGVVPNAQTYNHLITASCKGGDNARALKAYELMWNSGYQRAVTTATFNKLIQSASQTEGL 460

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           + A ++Y+ +     K     Y+  +  C++  D E A S+  +M   GV P++V   +L
Sbjct: 461 ESALKMYRKMLDAGYKPDAITYSTLVVACNRADDLEQALSISQEMEGLGVKPNQVVQHSL 520

Query: 311 IDFAGHAGKVE---AAFEILQEAKNQGISVGIISYSSLMGAC 349
           I   G AG+ E   A F +LQE + Q  SV   SYS +  AC
Sbjct: 521 IAAYGQAGQWEDAVATFRVLQEGEEQLTSV---SYSIIFDAC 559



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 47  LLEDMER-KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP------TLSTFNMLM 99
           L E+M+  +G++   + Y+      CK     + A + ++L+ N       T +TFN L+
Sbjct: 393 LFEEMKTIEGVVPNAQTYNHLITASCKGGDNAR-ALKAYELMWNSGYQRAVTTATFNKLI 451

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
              + ++  E A ++ R + +AG K D   Y+TL+  C ++  ++    +  EM   G++
Sbjct: 452 QSASQTEGLESALKMYRKMLDAGYKPDAITYSTLVVACNRADDLEQALSISQEMEGLGVK 511

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PN     +LI    +AGQ   A   + +++    +   V ++ +  AC   G  +     
Sbjct: 512 PNQVVQHSLIAAYGQAGQWEDAVATFRVLQEGEEQLTSVSYSIIFDACFGKGGAEAVLKR 571

Query: 220 LAEMNAEVHP 229
                 E+HP
Sbjct: 572 TKPGKLEIHP 581


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 163/324 (50%), Gaps = 4/324 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+ +L+   ++    E A ++   ++E G++AD  +YT++I+   +SG V     +F EM
Sbjct: 297 TYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRALVLFDEM 356

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            + G+ P+ HTYGALI G  KAGQ+  A      M+ K +  + V+FN LI    +SG V
Sbjct: 357 TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMV 416

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A  +   M  E   ++ D     ++        + D A+ +   + +  +      +T
Sbjct: 417 DEALRLQVVM--EKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFT 474

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+   + G++  A  V+ +M +KG +P+ +  + LID     G ++ A ++  E +N+
Sbjct: 475 TLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENR 534

Query: 334 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           G+   + + +SL+ G C + K    AL+L++ M    L P V T  A+I+ L    +  +
Sbjct: 535 GLIPDVYTCTSLIHGECIDGK-VDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEE 593

Query: 393 TMEVLSDMKSLGLCPNTITYSILL 416
             ++  +MK  GL P+   YS L+
Sbjct: 594 AFKLYDEMKETGLTPDDTVYSSLV 617



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 180/364 (49%), Gaps = 4/364 (1%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F++L  V A +K    A +    +++ G   D +     +    + G+VD+    F  MV
Sbjct: 158 FDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMV 217

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           N  +E  V++   ++DG  K G V         + +K VK + V +NA I    +   + 
Sbjct: 218 NLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLG 277

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
              ++L  M  E   V  + +T   L+   +N G+++ A+ +++ + +  I+    VYT 
Sbjct: 278 GVAEILTLMEKE--GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTS 335

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+C  ++G+ + A  ++D+MT KG+IP      ALI     AG++EAA  ++ E + +G
Sbjct: 336 IISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKG 395

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I +  + +++L+     +    +AL L   M+   L+  V   N++ + LC  ++  +  
Sbjct: 396 IDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAK 455

Query: 395 EVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
            +L  M   G+ PNT++++ L+ + C+  + VE    +  + +E G +PN++ +  +I  
Sbjct: 456 GLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAK-RVFREMEEKGNVPNIITYNVLIDG 514

Query: 454 CSRR 457
            S+R
Sbjct: 515 YSKR 518



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 168/360 (46%), Gaps = 4/360 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+N  +       D  G  ++L L+++ G+  +   YT LI   +  GK++    +F EM
Sbjct: 262 TYNAFIEGYFKRLDLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEM 321

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              GIE +V+ Y ++I    ++G V +A   +  M  K + P    + ALI    ++G +
Sbjct: 322 REKGIEADVYVYTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQM 381

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY- 272
           + A  ++ EM  +   +D + +    L+     +G VD A  +  ++ K  ++     Y 
Sbjct: 382 EAAQMLVNEMQGK--GIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYN 439

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +IA   C      E A  +   M ++GV P+ +  + LID     G    A  + +E + 
Sbjct: 440 SIASGLCKLNRKDE-AKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEE 498

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G    II+Y+ L+   S   N ++A +L + +++  L P V T  +LI   C   ++  
Sbjct: 499 KGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDM 558

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            +++  +M   GL PN +TY+ ++    +    E    L  + KE G+ P+  ++  ++G
Sbjct: 559 ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVG 618



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 154/333 (46%), Gaps = 16/333 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H ++ +   G+I E   L E+M  KG+     VY +     C+S   +K A   F  + 
Sbjct: 302 IHGFSNI---GKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGN-VKRALVLFDEMT 357

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +    P+  T+  L+     +   E A  ++  +Q  G+  +  ++ TLI    +SG VD
Sbjct: 358 DKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVD 417

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +   M   G+E +V  Y ++  G  K  +  +A G    M  + V P+ + F  LI
Sbjct: 418 EALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLI 477

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G    A  V  EM  + +   P+ IT   L+   +  G +   +E +K+  +  
Sbjct: 478 DIYCKEGNFVEAKRVFREMEEKGNV--PNIITYNVLIDGYSKRGNM---KEAHKLKDELE 532

Query: 265 IKG-TPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
            +G  P+VYT    I+     G  + A  ++D+M ++G++P+ V  +A+I      G+ E
Sbjct: 533 NRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSE 592

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
            AF++  E K  G++     YSSL+G+  +A++
Sbjct: 593 EAFKLYDEMKETGLTPDDTVYSSLVGSLHSAES 625



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 8/181 (4%)

Query: 288 ACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           A   ++ M KKG   DE    V+L AL       G+V++     +   N  + V + S +
Sbjct: 174 ALEAFEHMEKKGFHIDERSCLVYLLAL----RRGGQVDSCLRFFRRMVNLDVEVTVYSLT 229

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            ++       + +   +L + + +  +K  V T NA I        L    E+L+ M+  
Sbjct: 230 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKE 289

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 463
           G+  N +TY++L+        +E    L  + +E G+  ++ ++  II    R     R 
Sbjct: 290 GVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRA 349

Query: 464 L 464
           L
Sbjct: 350 L 350


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 192/424 (45%), Gaps = 46/424 (10%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTF 95
           + R+ E    LE+M  + L      Y      +CK  +  +      K+     PT  T+
Sbjct: 59  ENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTY 118

Query: 96  NMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           N L+S +C + + SE A+ +L  +  +G   D   YTTLIT   KS K D    VF ++V
Sbjct: 119 NSLISGLCKAERASE-AYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLV 177

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM-RSKNVKPDRVVFNALITACGQSGAV 213
             G  P+V TY  LIDG  K G++ +A   +G M +S +  P+ V +N+LI+   + G +
Sbjct: 178 ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM 237

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A ++L  M AE     PD +T   LM       ++D A   Y ++++           
Sbjct: 238 DEAMNLLERM-AETGS-SPDVVTYTTLMNGFCKLARLDDA---YDLLNQ----------- 281

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
                                MT+KG+ PD V  ++L+D      ++  A  IL E + +
Sbjct: 282 ---------------------MTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK 320

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
             S  + +Y++++     A   ++A +    ++ +   P V + N +I  LC  ++  + 
Sbjct: 321 SCSPTVYTYNTILDGYCRANQLEEARKF--MLEEMDCPPNVVSFNIMIRGLCKVNRSSEA 378

Query: 394 MEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
           ME++ + +     P+ + Y+ ++   C  K   E   +     +E G +PN + +  ++ 
Sbjct: 379 MELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVT 438

Query: 452 GMCS 455
           G+C+
Sbjct: 439 GLCN 442



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 156/363 (42%), Gaps = 7/363 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+  L+      K  E A   L  +   G   D   YT +I       ++    +   EM
Sbjct: 13  TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEM 72

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            N  + PNV TY  LIDG  K G+V +A      MR K V P  V +N+LI+   ++   
Sbjct: 73  ANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAERA 131

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A+D+L EM        PD  T   L+     + + D A  V++ +     +     Y+
Sbjct: 132 SEAYDLLEEM--VYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
             I+   + G  + A  ++  M K G  +P+ V  ++LI      GK++ A  +L+    
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE 249

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G S  +++Y++LM           A +L   M    L P V T  +L+  LC  ++L  
Sbjct: 250 TGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSD 309

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
            + +L +M+     P   TY+ +L    R + +E     + +  E    PN+V F  +I 
Sbjct: 310 AVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLE--EMDCPPNVVSFNIMIR 367

Query: 452 GMC 454
           G+C
Sbjct: 368 GLC 370



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 167/369 (45%), Gaps = 19/369 (5%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           +V      AD   YT+LI    K  +++       +MV+ G  P+V+TY A+I       
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVEN 60

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           ++ +A      M ++N+ P+ V +  LI    + G VD A  +L++M  +  P     +T
Sbjct: 61  RLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPT---AVT 117

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYD 293
             +L+     A   +RA E Y ++ +    G  P++  YT  I    ++   + A  V++
Sbjct: 118 YNSLISGLCKA---ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFE 174

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNA 352
            +  +G  PD V  S LID     G+++ A ++       G  +   ++Y+SL+      
Sbjct: 175 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRM 234

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
               +A+ L E M      P V T   L+   C   +L    ++L+ M   GL P+ +T+
Sbjct: 235 GKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTF 294

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKART--LNE-- 466
           + L+    R++ +   + +L + +     P +  +  I+ G C + + E+AR   L E  
Sbjct: 295 TSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD 354

Query: 467 ---HVLSFN 472
              +V+SFN
Sbjct: 355 CPPNVVSFN 363



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 185/403 (45%), Gaps = 14/403 (3%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFF-KLVP---NPTLSTFNMLM-SVCASSKDSEGAFQVLR 116
            Y +    +CK ++ +++A  F  K+V    +P + T+  ++ ++C  ++  E A + L 
Sbjct: 13  TYTSLIQGLCKVKR-LEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHE-ARKFLE 70

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
            +    L  +   YT LI    K G+VD    +  +M    + P   TY +LI G  KA 
Sbjct: 71  EMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNSLISGLCKAE 129

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           + ++A+     M      PD   +  LIT   +S   D A  V  ++ A      PD +T
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVA--RGFRPDVVT 187

Query: 237 IGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
              L+      G++  A +++ +MI   +       Y   I+   + G  + A ++ + M
Sbjct: 188 YSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERM 247

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            + G  PD V  + L++      +++ A+++L +   +G++  +++++SLM         
Sbjct: 248 AETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRL 307

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             A+ +   M+     PTV T N ++   C  +QL +  + +  ++ +   PN ++++I+
Sbjct: 308 SDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEMDCPPNVVSFNIM 365

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
           +    + +     + L+ +A+     P++VM+  +I G+C  +
Sbjct: 366 IRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREK 408



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 160/385 (41%), Gaps = 19/385 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-K 85
           +YN LI    +  R SE  DLLE+M   G +     Y       CKS+K+  +A R F +
Sbjct: 117 TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS-DDALRVFEQ 175

Query: 86  LVP---NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           LV     P + T++ L+  +C   +  E      R+++      +   Y +LI+   + G
Sbjct: 176 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 235

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+D    +   M   G  P+V TY  L++G  K  ++  A+     M  K + PD V F 
Sbjct: 236 KMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFT 295

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +L+    +   +  A  +L EM  +     P   T   ++     A Q++ AR+   M+ 
Sbjct: 296 SLMDGLCRENRLSDAVHILGEMRRK--SCSPTVYTYNTILDGYCRANQLEEARKF--MLE 351

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           + +       + I I    +      A  + ++  ++   PD V  + +ID      KV+
Sbjct: 352 EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVD 411

Query: 322 AAFEILQEA-KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            A  + ++  +  G     I+YS+L+    NA    +A    E        P + T N L
Sbjct: 412 EACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRARGYIEK----GCVPNIGTYNLL 467

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGL 405
           I A    ++     E+L DM   G 
Sbjct: 468 IDAFRKANRDEDARELLDDMVQRGF 492



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 26/253 (10%)

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           S   ++Y+SL+      K  ++AL     M S    P V T  A+I ALC  ++L +  +
Sbjct: 8   SADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARK 67

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            L +M +  L PN +TY++L+    +   V+  + LLS+ ++   +P  V +  +I G+C
Sbjct: 68  FLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLC 126

Query: 455 -SRRYEKARTLNEHVLSFNSGRPQI-----------ENKWTSLALMVYREAIVAGTIPTV 502
            + R  +A  L E ++ ++   P I           ++K +  AL V+ + +  G  P V
Sbjct: 127 KAERASEAYDLLEEMV-YSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDV 185

Query: 503 EVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAF 555
              S ++  L    +L    D+  R++++     + +  +   SLI GF   G+ D  A 
Sbjct: 186 VTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYN---SLISGFCRMGKMD-EAM 241

Query: 556 SLLEEAASFGIVP 568
           +LLE  A  G  P
Sbjct: 242 NLLERMAETGSSP 254


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 201/434 (46%), Gaps = 21/434 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN ++    ++G+++E  DLL DM+  GLL     ++      CK    +KEA +   L
Sbjct: 249 SYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCK-LGWLKEAAQVIDL 307

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      P + T+NML+  +C   K  E AF++   ++   L  D   Y TLI  C    
Sbjct: 308 MAQNNVLPDVWTYNMLIGGLCKDGKIDE-AFRLKDEMENLKLLPDVVTYNTLINGCFDCS 366

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
                FE+  +M   G++PN  TY  ++    K G++  A      M      PD V FN
Sbjct: 367 SSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFN 426

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    ++G +  AF ++ EM+ +   +  + +T+  ++       ++D A   YK++ 
Sbjct: 427 TLINGYCKAGRLSEAFRMMDEMSRK--GLKMNSVTLNTILHTLCGERKLDDA---YKLLS 481

Query: 262 KYNIKG--TPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
             + +G    EV Y   I    + G    A  ++D+M +K +IP  +  + +I    H+G
Sbjct: 482 SASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSG 541

Query: 319 KVEAAFEILQEAKNQGISVGIISYSS-LMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           K + + + L E    G+     +Y++ ++G C   +  +KA + +  M     KP + T 
Sbjct: 542 KTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQ-VEKAFQFHNKMVKKSFKPDLFTC 600

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N L+  LC    L K +++ +   S G   + +TY+ ++    ++D  E    LL++ +E
Sbjct: 601 NILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEE 660

Query: 438 DGVIPNLVMFKCII 451
             + P+   +  I+
Sbjct: 661 KKLGPDCYTYNAIL 674



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 169/403 (41%), Gaps = 37/403 (9%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +TFN+L+  C        A  ++  +++     D   Y T++    K GK++   ++  +
Sbjct: 213 NTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLD 272

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M N G+ PN +T+  L+ G  K G + +A     +M   NV PD   +N LI    + G 
Sbjct: 273 MKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGK 332

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D AF +  EM  E   + PD +T   L+  C                            
Sbjct: 333 IDEAFRLKDEM--ENLKLLPDVVTYNTLINGC---------------------------- 362

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
               +C S    +E    + D M  KGV P+ V  + ++ +    GK++ A   L++ + 
Sbjct: 363 ---FDCSSSLKGFE----LIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEE 415

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G S   +++++L+     A    +A  + + M    LK    T+N ++  LC   +L  
Sbjct: 416 SGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDD 475

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             ++LS     G   + ++Y  L++   +       + L  + KE  +IP+++ +  +IG
Sbjct: 476 AYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIG 535

Query: 453 MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 495
                 +  +++++      SG    E  + ++ L   RE  V
Sbjct: 536 GLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQV 578



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 151/359 (42%), Gaps = 58/359 (16%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI    + GR+SE   ++++M RKGL  M+ V      +    ++ + +A++    
Sbjct: 424 TFNTLINGYCKAGRLSEAFRMMDEMSRKGL-KMNSVTLNTILHTLCGERKLDDAYKLLSS 482

Query: 87  VPN---------------------------------------PTLSTFNMLMSVCASSKD 107
                                                     P++ T+N ++     S  
Sbjct: 483 ASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGK 542

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           ++ +   L  + E+GL  D   Y T+I    + G+V+  F+  ++MV    +P++ T   
Sbjct: 543 TDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNI 602

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+ G    G + KA   +    SK    D V +N +I+   +    + AFD+LAEM  E 
Sbjct: 603 LLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEM--EE 660

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD  T  A++ A A+AG++  A E    I +   +G  +  TI++N   +      
Sbjct: 661 KKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVE---QGKLQDQTISLN-KRKIESSSE 716

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
                D        P+ V  S  I+     GK + A  ++QE+  +GI++   +Y SLM
Sbjct: 717 TSQESD--------PNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTYISLM 767



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/314 (19%), Positives = 131/314 (41%), Gaps = 6/314 (1%)

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNALI 204
           ++F+ M    ++PN+ T   LI+   +       + +  I        VK +   FN LI
Sbjct: 160 QIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNILI 219

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
             C     +  A  ++ +M        PD+++   ++      G+++ AR++   +    
Sbjct: 220 YGCCIENKLSEAIGLIGKMKD--FSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNG 277

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +      + I ++   + G  + A  V D M +  V+PD    + LI      GK++ AF
Sbjct: 278 LLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAF 337

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +  E +N  +   +++Y++L+  C +  +  K  EL + M+   +KP   T N ++   
Sbjct: 338 RLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWY 397

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
               ++      L  M+  G  P+ +T++ L+    +   +     ++ +    G+  N 
Sbjct: 398 VKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNS 457

Query: 445 VMFKCII-GMCSRR 457
           V    I+  +C  R
Sbjct: 458 VTLNTILHTLCGER 471


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 170/366 (46%), Gaps = 9/366 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P L TFN +++          A  V+  ++  G   +   Y TLI    K G+V  M++ 
Sbjct: 228 PNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKA 287

Query: 149 --VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +  EMV   + PN  T+  LIDG  K   ++ A   +  M+S+ +KP  V +N+L+  
Sbjct: 288 DAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNG 347

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
               G ++ A  +L EM +    + P+ IT  AL+        ++ ARE++  I K  + 
Sbjct: 348 LCNEGKLNEAKVLLDEMLSS--NLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGL- 404

Query: 267 GTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            TP V T    ++   + G  E A  +   M +KG +P+    + LI      GK+E   
Sbjct: 405 -TPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVK 463

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +L E + +G+    ++Y+ L+ A    K  +KA  L + M    LKP+  T N L+   
Sbjct: 464 NLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGY 523

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C    L   + +   M+  G   N +TY++L+    RK  +E    LL++  E G+IPN 
Sbjct: 524 CMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNR 583

Query: 445 VMFKCI 450
             ++ I
Sbjct: 584 TTYEII 589



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 189/414 (45%), Gaps = 15/414 (3%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N L+S      +  G   V + +    +  +   + T+I    K GK++   +V  +M  
Sbjct: 199 NPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKV 258

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS---KNVKPDRVVFNALITACGQSGA 212
            G  PNV TY  LIDG  K G+V K + A  I++      V P+ V FN LI    +   
Sbjct: 259 WGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDEN 318

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +  A  V  EM ++   + P  +T  +L+    N G+++ A+ +   +   N+K     Y
Sbjct: 319 LSAALKVFEEMQSQ--GLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITY 376

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              IN   +    E A  ++D++ K+G+ P+ +  + L+      GK+E AF + +    
Sbjct: 377 NALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLE 436

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +G      +Y+ L+ G C   K  ++   L   M+   +K    T N LI+A C+  +  
Sbjct: 437 KGFLPNASTYNCLIVGFCREGK-MEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPK 495

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           K   ++ +M   GL P+ +TY+ILL     + ++   L L  Q +++G   N+V +  +I
Sbjct: 496 KAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLI 555

Query: 452 -GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503
            G C + + E A  L   +L     +  I N+ T    ++  E +  G +P +E
Sbjct: 556 QGYCRKGKLEDANGLLNEMLE----KGLIPNRTT--YEIIKEEMMEKGFLPDIE 603



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 141/337 (41%), Gaps = 37/337 (10%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+    ++ K     E F    +   + +V +   L+    K  +       Y  M  + 
Sbjct: 166 LVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRK 225

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + P+ + FN +I    + G +++A DV+ +M  +V    P+ +T   L+      G+V +
Sbjct: 226 ISPNLITFNTVINGLCKVGKLNKAGDVVDDM--KVWGFWPNVVTYNTLIDGYCKMGRVGK 283

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
              +YK                             A ++  +M +  V P+ V  + LID
Sbjct: 284 ---MYK-----------------------------ADAILKEMVENKVSPNSVTFNVLID 311

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                  + AA ++ +E ++QG+   +++Y+SL+    N     +A  L + M S  LKP
Sbjct: 312 GFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKP 371

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V T NALI   C    L +  E+  ++   GL PN IT++ LL    +   +E   +L 
Sbjct: 372 NVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQ 431

Query: 433 SQAKEDGVIPNLVMFKC-IIGMC--SRRYEKARTLNE 466
               E G +PN   + C I+G C   +  E    LNE
Sbjct: 432 KVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNE 468



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/403 (21%), Positives = 171/403 (42%), Gaps = 51/403 (12%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK----- 75
           +S  L ++N +I    + G++++  D+++DM+  G       Y+      CK  +     
Sbjct: 226 ISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMY 285

Query: 76  ---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
              AI +     K+ PN    TFN+L+      ++   A +V   +Q  GLK     Y +
Sbjct: 286 KADAILKEMVENKVSPNSV--TFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNS 343

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+      GK++    +  EM+++ ++PNV TY ALI+G  K   + +A   +  +  + 
Sbjct: 344 LVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQG 403

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + P+ + FN L+    + G ++ AF +L ++  E   + P+  T   L+      G+++ 
Sbjct: 404 LTPNVITFNTLLHGYCKFGKMEEAF-LLQKVMLEKGFL-PNASTYNCLIVGFCREGKMEE 461

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
            + +   +    +K     Y I I+   +  + + A  + D+M  KG+ P  +  + L++
Sbjct: 462 VKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLN 521

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G + AA  + ++ + +G    +++Y                              
Sbjct: 522 GYCMEGNLRAALNLRKQMEKEGRWANVVTY------------------------------ 551

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
                N LI   C   +L     +L++M   GL PN  TY I+
Sbjct: 552 -----NVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEII 589


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 124/520 (23%), Positives = 220/520 (42%), Gaps = 86/520 (16%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFF 84
           ++YN +I      G+  E   LLE  + +G +     Y+      C  +K  + EA R F
Sbjct: 339 YAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCIL--TCLGKKGRLGEALRTF 396

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +     P LST+N+L+ +   + + E AF+V   ++EAGL  +      +I    K+ 
Sbjct: 397 EEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAK 456

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+D    +F  M +    P+  T+ +LIDG  K G+V  A+  Y  M   +  P+ VV+ 
Sbjct: 457 KLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYT 516

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDR-------- 252
           +LI +  + G  +    +  EM   +H    PD   + A M     AG+  +        
Sbjct: 517 SLIKSFFKCGRKEDGHKIFKEM---IHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEI 573

Query: 253 ------------------------AREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDW 285
                                   ARE Y++ +    +G       Y   I+   ++G  
Sbjct: 574 KSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKV 633

Query: 286 EFACSVYDDMTKKGVIP------------------DEVFL-----------------SAL 310
             A  + ++M  KG  P                  DE ++                 S+L
Sbjct: 634 NKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSL 693

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID  G  G+++ A+ I++E   +G++  + +++ L+ A   A+   +AL  +++MK++K 
Sbjct: 694 IDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKG 753

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P   T + LI  LC   +  K      +M+  GL PNTITY+ ++    +  ++     
Sbjct: 754 TPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASS 813

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV 468
           L  + K +G +P+   +  II G+  SRR  +A  + E  
Sbjct: 814 LFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEET 853



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 112/495 (22%), Positives = 213/495 (43%), Gaps = 20/495 (4%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T +   +++S   S+K  EG F +++ +++   +     YTTLI   +   + D M  +F
Sbjct: 163 TKTCIELILSCIKSNKLREG-FDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLF 221

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           H+M   G E +VH +  +I   A+ G++  A      M+S  +  D V++N  I   G++
Sbjct: 222 HQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKA 281

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G VD A+    E+ +  H + PD +T  +++       ++D A E+++ + +        
Sbjct: 282 GKVDMAWKFFHEIKS--HGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAY 339

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   I      G ++ A S+ +    +G IP  +  + ++   G  G++  A    +E 
Sbjct: 340 AYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEM 399

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K    +  + +Y+ L+     A   + A ++ + MK   L P V T+N +I  LC   +L
Sbjct: 400 KKDA-APNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKL 458

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            +   +   M      P+ +T+  L+    ++  V+    L  Q  +   IPN V++  +
Sbjct: 459 DEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSL 518

Query: 451 IG---MCSRRYEKARTLNEHVLSFNSGRPQIENKW---------TSLALMVYREAIVAGT 498
           I     C R+ +  +   E +    S   ++ N +         T     ++ E    G 
Sbjct: 519 IKSFFKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGF 578

Query: 499 IPTVEVVSKVL-GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAF 555
           IP V   S ++ G ++  +  +  E L   +      L      + IDGF +     +A+
Sbjct: 579 IPDVMSYSILIHGLVKAGFARETYE-LFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAY 637

Query: 556 SLLEEAASFGIVPCV 570
            LLEE  + G  P V
Sbjct: 638 QLLEEMKTKGRQPTV 652



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 129/558 (23%), Positives = 220/558 (39%), Gaps = 66/558 (11%)

Query: 71  CKSQKAIKEAF------RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           C     ++E F      R FK    P  S +  L+   +S ++S+    +   +QE G +
Sbjct: 173 CIKSNKLREGFDLIQCMRKFKF--RPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYE 230

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
               L+TT+I   A+ G++DA   +  EM +  +  ++  Y   ID   KAG+V  A+  
Sbjct: 231 VSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKF 290

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
           +  ++S  + PD V + ++I    +   +D A ++  +M  E +   P       ++   
Sbjct: 291 FHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQM--EQNRNVPCAYAYNTMIMGY 348

Query: 245 ANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            +AG+ D   E Y ++ +   +G  P V  Y   + C  + G    A   +++M KK   
Sbjct: 349 GSAGKFD---EAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEM-KKDAA 404

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P+    + LID    AG+VEAAF++    K  G+   +++ + ++     AK   +A  +
Sbjct: 405 PNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSI 464

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA--- 418
           +E M      P   T  +LI  L    ++     +   M      PN + Y+ L+ +   
Sbjct: 465 FEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFK 524

Query: 419 CERKDD--------------------------------VEVGLMLLSQAKEDGVIPNLVM 446
           C RK+D                                   G  L  + K  G IP+++ 
Sbjct: 525 CGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMS 584

Query: 447 FKCII------GMCSRRYEKARTLNEH--VLSFNSGRPQIENKWTS----LALMVYREAI 494
           +  +I      G     YE    + E   VL  ++    I+    S     A  +  E  
Sbjct: 585 YSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMK 644

Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--P 552
             G  PTV     V+  L      D    L E    +   L      SLIDGFG+     
Sbjct: 645 TKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRID 704

Query: 553 RAFSLLEEAASFGIVPCV 570
            A+ ++EE    G+ P V
Sbjct: 705 EAYLIMEELMQKGLTPNV 722



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 180/417 (43%), Gaps = 25/417 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA--------RFFNVCKSQKAIKEAFRFFKL 86
           L +QGR+ +   L E M     LD DK+ +A         FF   + +   K        
Sbjct: 487 LGKQGRVDDAYRLYEQM-----LDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHR 541

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             +P L   N  M     + ++     +   ++  G   D   Y+ LI    K+G     
Sbjct: 542 GCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARET 601

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           +E+F+ M   G   + H Y   IDG  K+G+V KA+     M++K  +P  V + ++I  
Sbjct: 602 YELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDG 661

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   +D A+ +  E  A+ + ++ + +   +L+      G++D   E Y ++ +   K
Sbjct: 662 LAKIDRLDEAYMLFEE--AKSNGLELNVVIYSSLIDGFGKVGRID---EAYLIMEELMQK 716

Query: 267 G-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G TP VYT    ++   +  +   A   + +M      P+ +  S LI+      K   A
Sbjct: 717 GLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKA 776

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           F   QE + QG+    I+Y++++   + A N  +A  L+E  K+    P  ++ NA+I  
Sbjct: 777 FVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEG 836

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE----VGLMLLSQAK 436
           L    +  +  ++  + +  G   +T T   LL A ++ + +E    VG +L   AK
Sbjct: 837 LSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQKDECLEQAAIVGAVLREIAK 893



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/361 (20%), Positives = 147/361 (40%), Gaps = 13/361 (3%)

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +++L+    ++   D    +L EM+  +    P   T   L+ +C  + ++    ++ + 
Sbjct: 131 YDSLLLVMAKNVKFDYFEQILGEMS--IAGFGPSTKTCIELILSCIKSNKLREGFDLIQC 188

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + K+  +     YT  I   S   + +   +++  M + G        + +I      G+
Sbjct: 189 MRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGR 248

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++AA  +L E K+  +   I+ Y+  +     A     A + +  +KS  L P   T  +
Sbjct: 249 LDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTS 308

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           +I  LC G++L + +E+   M+     P    Y+ +++        +    LL + K  G
Sbjct: 309 MIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARG 368

Query: 440 VIPNLVMFKCI---IGMCSRRYEKARTLNE-------HVLSFNSGRPQIENKWTSLALMV 489
            IP+++ + CI   +G   R  E  RT  E       ++ ++N     +       A   
Sbjct: 369 CIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFK 428

Query: 490 YREAIV-AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFG 548
            R+A+  AG  P V  V+ ++  L      D    + E +     +      CSLIDG G
Sbjct: 429 VRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLG 488

Query: 549 E 549
           +
Sbjct: 489 K 489



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 94/213 (44%), Gaps = 7/213 (3%)

Query: 248 GQVDRAREVYKMI--HKYNIKGT-----PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           G + RA++V + I   ++  + T     PE Y   +   ++   +++   +  +M+  G 
Sbjct: 100 GVLRRAKDVNQAISYFRWTERKTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGF 159

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            P       LI     + K+   F+++Q  +         +Y++L+GA S+ +     L 
Sbjct: 160 GPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLT 219

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           L+  M+ +  + +V     +I       +L   + +L +MKS  L  + + Y++ +    
Sbjct: 220 LFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFG 279

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           +   V++      + K  G++P+ V +  +IG+
Sbjct: 280 KAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGV 312


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 207/466 (44%), Gaps = 17/466 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L+R+G + E + L+E M             A    +C S +   EA R       P +  
Sbjct: 69  LVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRT-AEARRVLAAC-EPDVMA 126

Query: 95  FN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +N M+   C + +         RLV +  ++ D   Y TLI      G+      V  +M
Sbjct: 127 YNAMVAGYCVTGQLDAAR----RLVADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDM 182

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +  G  P+V TY  L++   K     +A      MR+K   PD + +N ++    Q G V
Sbjct: 183 LRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRV 242

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE--- 270
           D A + L  + +  H  +P+ ++   ++K    A   +R  +  K++ + + KG P    
Sbjct: 243 DDAIEFLKSLPS--HGCEPNTVSYNIVLKGLCTA---ERWEDAEKLMAEMSQKGYPPNVV 297

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            + + I+   + G  E A  V D + K G  P+ +  + ++       K++ A   ++  
Sbjct: 298 TFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELM 357

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            ++G    I+SY++L+ A         A+EL   +K     P + + N +I  L    + 
Sbjct: 358 VSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKT 417

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            + +E+L++M + GL P+ ITYS +     R+D +E  +    + ++ G+ PN V++  I
Sbjct: 418 KEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAI 477

Query: 451 -IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 495
            +G+C RR E    ++  +   ++G    E+ +T L   +  E +V
Sbjct: 478 LLGLCKRR-ETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLV 522



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 176/426 (41%), Gaps = 38/426 (8%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LIR    +GR    + +L+DM R+G +                            
Sbjct: 157 YTYNTLIRGLCGRGRTGNALVVLDDMLRRGCV---------------------------- 188

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P + T+ +L+         + A ++L  ++  G   D   Y  ++    + G+VD 
Sbjct: 189 ----PDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDD 244

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             E    + + G EPN  +Y  ++ G   A +   A      M  K   P+ V FN LI+
Sbjct: 245 AIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLIS 304

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G V+ A +VL ++    +   P+ ++   ++ A     ++DRA    +++     
Sbjct: 305 FLCRRGLVEPAMEVLDQIPK--YGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGC 362

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 Y   +    + G+ + A  +   +  KG  P  +  + +ID    AGK + A E
Sbjct: 363 YPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALE 422

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L E   +G+   II+YS++          ++A+  +  ++ + ++P     NA++  LC
Sbjct: 423 LLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLC 482

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              +    +++   M S G  PN  TY+IL+     +  V+    LL +    GV+   +
Sbjct: 483 KRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVVSKGL 542

Query: 446 MFKCII 451
           + K  I
Sbjct: 543 INKAAI 548


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 211/498 (42%), Gaps = 52/498 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFK--LV 87
           N L  +GR+ E +D+LE+M +KG+      Y     ++C    S +A++   +  K   V
Sbjct: 280 NGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCV 339

Query: 88  PN---------------------------------PTLSTFNMLMSVCASSKDSEGAFQV 114
           PN                                 PT  T+N L++        E AF +
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
            + +   G     + Y  +I      G +     +F +M+ AG  PNV TY  LI G  K
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCK 459

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
            G +  A     IM+   +KPD   +  LI+   + G ++ A  +   M    H + P+H
Sbjct: 460 QGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMME--HGISPNH 517

Query: 235 ITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
           +T  A++    N  +VD A  ++ KM+   N+  + + Y + I+  S+T     A +   
Sbjct: 518 VTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSS-QTYNVMISGFSKTNSISEAENFCG 576

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 352
            M K+G++P+ +  ++ ID     G+   AF+I  E + +     + +YSSL+ G C   
Sbjct: 577 KMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEG 636

Query: 353 KNWQKAL-ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           +     +  L   +     +P V T   L+  LC   +  +  +++  M+  GL P+   
Sbjct: 637 RAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEI 696

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKARTLNEHVL 469
           Y  LL+   +   VE  L +       G   +L  +K +I  +C   + E+A+ + + +L
Sbjct: 697 YRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTML 756

Query: 470 S--FNSGRPQIENKWTSL 485
              +NS     E  WT L
Sbjct: 757 EKHWNSD----EVAWTVL 770



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 185/452 (40%), Gaps = 27/452 (5%)

Query: 7   NMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR 66
           ++L+F +   +   + HD+S  +   NRL+R  R+    D                 H R
Sbjct: 93  SVLRFFFWISRRKFFKHDMSCFVSMLNRLVRD-RLFAPAD-----------------HVR 134

Query: 67  FFNV--CKSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
              +  C+++  +K   +F   + +      TL +F  L+         + A  +   + 
Sbjct: 135 ILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKML 194

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
            +G++     + T+I    K G+V     +   +      PN  TY +LI G  +   + 
Sbjct: 195 NSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLD 254

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            AF  +  M      P+ V ++ LI      G ++ A D+L EM  +   ++P   T   
Sbjct: 255 LAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK--GIEPTVYTYTI 312

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
            + +  +AG    A E+   + K       + +T  I+  S+ G +E A  +Y  M   G
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG 372

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           ++P  V  +ALI+     G+ E AF I +   + G      +Y+ ++       + QKA+
Sbjct: 373 LVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAM 432

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            +++ M      P V T N LI   C    L   M +L  MK  GL P+  TY+ L+   
Sbjct: 433 VIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            R   +E    L     E G+ PN V +  II
Sbjct: 493 SRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/448 (21%), Positives = 188/448 (41%), Gaps = 20/448 (4%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVC 71
           N  +D    L S+  L+ Q    + +DL  DM         R  LL  + +      N+ 
Sbjct: 158 NSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTM-----INIL 212

Query: 72  KSQKAIKEA----FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
             +  ++EA       F+    P   T+  L+     + + + AF +   + + G   + 
Sbjct: 213 CKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNS 272

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
             Y+TLI      G+++   ++  EMV  GIEP V+TY   +     AG  ++A    G 
Sbjct: 273 VTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGK 332

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M+ +   P+   F ALI+   + G  + A  +  +M A+   + P  +T  AL+      
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLAD--GLVPTTVTYNALINQLCVE 390

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G+ + A  ++K +  +    + + Y   I C    GD + A  ++D M K G  P+ +  
Sbjct: 391 GRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITY 450

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + LI      G +  A  +L+  K  G+     +Y+ L+   S     + A  L+  M  
Sbjct: 451 NTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMME 510

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             + P   T  A+I    +  ++   + +   M   G  P++ TY++++    + + +  
Sbjct: 511 HGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISE 570

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMC 454
                 +  + G++PN++ +   I G+C
Sbjct: 571 AENFCGKMVKQGLLPNVITYTSFIDGLC 598



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 154/367 (41%), Gaps = 2/367 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+L TFN ++++       + A  ++  +       +   YT+LI    ++  +D  F +
Sbjct: 200 PSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM 259

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  MV  G +PN  TY  LI+G    G++ +A      M  K ++P    +   + +   
Sbjct: 260 FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCD 319

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G    A ++L +M        P+  T  AL+   +  G+ + A  +Y  +    +  T 
Sbjct: 320 AGCSSEAVELLGKMKKR--GCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTT 377

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   IN     G +E A +++  M   G +P     + +I      G ++ A  I  +
Sbjct: 378 VTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDK 437

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G S  +I+Y++L+       N   A+ L E MK   LKP   T   LI+    G +
Sbjct: 438 MLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGK 497

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L     +   M   G+ PN +TY+ ++        V+  L L  +  E G +P+   +  
Sbjct: 498 LEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNV 557

Query: 450 IIGMCSR 456
           +I   S+
Sbjct: 558 MISGFSK 564



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 177/387 (45%), Gaps = 14/387 (3%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +TTL+    K   VD   +++ +M+N+GI P++ T+  +I+   K G+V +A      + 
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIF 229

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
             +  P+   + +LI    ++  +D AF +   M  +    DP+ +T   L+    + G+
Sbjct: 230 RYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKD--GCDPNSVTYSTLINGLCSEGR 287

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           ++ A ++ + + +  I+ T   YTI +      G    A  +   M K+G +P+    +A
Sbjct: 288 LEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTA 347

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI      GK E A  +  +    G+    ++Y++L+        ++ A  +++ M S  
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P+  T N +I   C    + K M +   M   G  PN ITY+ L+    ++ ++   +
Sbjct: 408 SLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAM 467

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL----NEHVLSFNS-GRPQIENKW 482
            LL   K +G+ P+   +  +I   SR  + E A +L     EH +S N      I + +
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527

Query: 483 TSL-----ALMVYREAIVAGTIPTVEV 504
            +L     AL ++ + + +G +P+ + 
Sbjct: 528 FNLAKVDDALALFWKMVESGNLPSSQT 554



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 179/413 (43%), Gaps = 15/413 (3%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRF 83
           +YN LI Q    GR      + + M   G L   + Y+      C     QKA+    + 
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K   +P + T+N L+       +   A ++L +++  GLK D   YT LI+  ++ GK+
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +    +F+ M+  GI PN  TY A+IDG     +V  A   +  M      P    +N +
Sbjct: 499 EHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVM 558

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I+   ++ ++  A +   +M  +   + P+ IT  + +      G+   A +++  + K 
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQ--GLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR 616

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYD---DMTKKGVIPDEVFLSALIDFAGHAGKV 320
           N       Y+  I    Q G  E A  +Y+    +T  G  P+    + L+      G+ 
Sbjct: 617 NYFPNLYTYSSLIYGLCQEGRAEDA-EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRC 675

Query: 321 EAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
             A +++   + +G+      Y +L+ G C N K  + AL ++  M ++  +  +S   A
Sbjct: 676 YEADQLVVSMQKKGLQPSEEIYRALLIGECKNLK-VESALNIFYSMDTLGFQLHLSDYKA 734

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           LI ALC  + + +   +   M       + + +++LL    ++ + ++ L LL
Sbjct: 735 LICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLL 787



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 136/328 (41%), Gaps = 19/328 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRF 83
           +Y  LI    R G++     L   M   G+      Y A    +FN+ K   A+     F
Sbjct: 484 TYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALA---LF 540

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +K+V +   P+  T+N+++S  + +     A      + + GL  +   YT+ I    ++
Sbjct: 541 WKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRN 600

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKNVKPDRV 198
           G+    F++FHEM      PN++TY +LI G  + G+   A+ +     +     +P+  
Sbjct: 601 GRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVD 660

Query: 199 VFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
            +  L+   CG+    +    V++     + P   + I    L+  C N  +V+ A  ++
Sbjct: 661 TYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP--SEEIYRALLIGECKNL-KVESALNIF 717

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             +     +     Y   I    +    E A  ++  M +K    DEV  + L+D     
Sbjct: 718 YSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKE 777

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSL 345
           G+ +   ++L   +++  ++   +Y  L
Sbjct: 778 GETDLCLKLLHVMESRNCTLNFQTYVML 805



 Score = 42.4 bits (98), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 19/169 (11%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +Y  L++    +GR  E   L+  M++KGL   +++Y A     CK+ K ++ A   F  
Sbjct: 661 TYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLK-VESALNIFYS 719

Query: 85  --KLVPNPTLSTFNMLMSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
              L     LS +  L  +CA  K++  E A  + + + E    +D   +T L+    K 
Sbjct: 720 MDTLGFQLHLSDYKAL--ICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKE 777

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGAL------IDGCAKAGQVAKAFG 183
           G+ D   ++ H M +     N  TY  L      +D   K  Q+++  G
Sbjct: 778 GETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIKIPQISQQLG 826


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 157/339 (46%), Gaps = 10/339 (2%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MFE 148
           T+  FN +M V A S   + A Q+L  +++  ++ D   + TLI   AKSG + A    E
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALE 279

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-- 206
           + HE+  AG+ P+  TY  LI  C++   +  A   +  M +   +PD   +NA+++   
Sbjct: 280 LLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHG 339

Query: 207 -CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
            CG++   +  F  L E   +     PD +T  +L+ A A  G V+R   V + + K   
Sbjct: 340 RCGKAQEAELMFKELVEKGFQ-----PDAVTYNSLLYAFAKEGDVERVERVCEELVKAGF 394

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           +     Y   I+   + G  + A  +YD+M   G  PD V  + L+D  G   ++  A +
Sbjct: 395 RKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGK 454

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L+E  + G+   ++++S+L+ A + +     A   ++ M    +KP       ++    
Sbjct: 455 VLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFA 514

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
             D+  K M +   M   G  P+   Y +LL A  + ++
Sbjct: 515 RSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNE 553



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 161/361 (44%), Gaps = 2/361 (0%)

Query: 95   FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
            +N L+   A S   E A  +  ++ + G     +    ++      G++D ++ V  E+ 
Sbjct: 785  WNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQELQ 844

Query: 155  NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            +  I+ +  T   +++  AKAG V +    Y  M++    P+  ++  +I+    +    
Sbjct: 845  DLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFR 904

Query: 215  RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
                ++AEM  E     PD + +  L+      G  DR  EVY  I +  ++   + Y  
Sbjct: 905  DVELMVAEM--EGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNT 962

Query: 275  AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
             I   S+    E   ++  +M K+G+ P       L+  +G A   E A  + +E + +G
Sbjct: 963  LIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKG 1022

Query: 335  ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
              +    Y  +M    NA+N  KA  L   MK   ++PT++TM+ L+T+        +  
Sbjct: 1023 YRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAE 1082

Query: 395  EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
            +VL+ +KS  L  +T+ YS +L A  R  D  +G+  L + K DGV P+  ++   I   
Sbjct: 1083 KVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAA 1142

Query: 455  S 455
            S
Sbjct: 1143 S 1143



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 150/327 (45%), Gaps = 13/327 (3%)

Query: 144 DAMFE-VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           DA+ E VF      G    V  + A++   A++G+   A      MR ++++PD V FN 
Sbjct: 204 DALAEDVFLRFAREG--ATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNT 261

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGALMKACANAGQVDRAREVYKMI 260
           LI A  +SG +  A  V  E+  EV    + PD IT   L+ AC+    +D A  V++ +
Sbjct: 262 LINARAKSGCL--AAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEM 319

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                +     Y   ++   + G  + A  ++ ++ +KG  PD V  ++L+      G V
Sbjct: 320 IASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDV 379

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E    + +E    G     I+Y++++           AL LY+ M++I   P   T   L
Sbjct: 380 ERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVL 439

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVEVGLMLLSQAKE 437
           + +L   D++ +  +VL +M   GL P  +T+S L+ A     R+DD E       +  E
Sbjct: 440 VDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAE---RTFDRMVE 496

Query: 438 DGVIPNLVMFKCIIGMCSRRYEKARTL 464
            GV P+ + +  ++ + +R  E  + +
Sbjct: 497 SGVKPDRLAYLVMLDVFARSDETRKLM 523



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 170/446 (38%), Gaps = 70/446 (15%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+ +L+           A +VL  + +AGLK     ++ LI   AKSG+ D    
Sbjct: 430 TPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAER 489

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F  MV +G++P+   Y  ++D  A++ +  K    Y  M     KPD  ++  L+ A  
Sbjct: 490 TFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALA 549

Query: 209 QSGAVDRAFDVLAEMNA--EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           +    D    V+ +M A  E++P+    I I A                           
Sbjct: 550 KGNEHDEIEGVIQDMEAVFEMNPLVISSILIKA--------------------------- 582

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                      C SQ        S+      +G  PD   L +++D     GK E    +
Sbjct: 583 ----------ECISQ------GASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSL 626

Query: 327 LQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTMNALIT 382
           L+  +     S  +IS  S+M  C N K    A++ Y   + +K             LIT
Sbjct: 627 LEWIRQHVPNSHNLISECSIMLLCKNGKI-VDAIQEYSRKQMLKRGSFGQDCDLYEYLIT 685

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            L + +  P+  +V  DM+ LG+ P+   +   +  C R    E    L+  A    +  
Sbjct: 686 YLEEAELFPEACQVFCDMQFLGIVPSQKVFPSFIFQCCRLGFPETAYQLMDDAARSDI-- 743

Query: 443 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ---IENK-WTSL------------A 486
           +L +  C + M    Y K + L +   +F  G  Q   ++ + W +L            A
Sbjct: 744 SLNILSCRVAMIE-AYGKLK-LWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHA 801

Query: 487 LMVYREAIVAGTIPTVEVVSKVLGCL 512
             ++   I  G +PTVE V+ ++  L
Sbjct: 802 RAIFDIMIKKGPLPTVESVNGMMRAL 827



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/413 (21%), Positives = 160/413 (38%), Gaps = 82/413 (19%)

Query: 98   LMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            +M +C + K  D+   +   ++++      DC LY  LIT   ++       +VF +M  
Sbjct: 646  IMLLCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYEYLITYLEEAELFPEACQVFCDMQF 705

Query: 156  AGIEPNVHTYGALIDGCAKAGQVAKAFG-----------------------AYGIMR--- 189
             GI P+   + + I  C + G    A+                        AYG ++   
Sbjct: 706  LGIVPSQKVFPSFIFQCCRLGFPETAYQLMDDAARSDISLNILSCRVAMIEAYGKLKLWQ 765

Query: 190  -----SKNVKP----DRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITI 237
                  K +K     DR ++NALI A  +SG  + A   FD++ +      P+ P   ++
Sbjct: 766  QAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKG----PL-PTVESV 820

Query: 238  GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
              +M+A    G++D    V + +   +IK +     + +   ++ GD      +Y+ M  
Sbjct: 821  NGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKA 880

Query: 298  KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
             G +P+      +I                                SL+  C N K ++ 
Sbjct: 881  AGYLPNMHLYRIMI--------------------------------SLL--CHN-KRFRD 905

Query: 358  ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
               +   M+    KP +  +N L+          +T+EV   +   GL P+  TY+ L+V
Sbjct: 906  VELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIV 965

Query: 418  ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHV 468
               R    E G  LL +  + G+ P L  +K ++     ++ +E+A  L E +
Sbjct: 966  MYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEM 1018



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/283 (19%), Positives = 115/283 (40%), Gaps = 33/283 (11%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P +  + +++S+   +K       ++  ++ AG K D  +  TL+     +G  D   EV
Sbjct: 885  PNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEV 944

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            +H ++ AG+EP+  TY  LI   ++  +  + F     M  + + P    +  L+ A G+
Sbjct: 945  YHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGK 1004

Query: 210  SGAVDRAFDVLAEM--------------------NAEVHP-------------VDPDHIT 236
            +   ++A  +  EM                    NA  H              ++P   T
Sbjct: 1005 AKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIAT 1064

Query: 237  IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
            +  LM +   +G  D A +V   +   N++ +   Y+  ++   +  D+    +   +M 
Sbjct: 1065 MHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMK 1124

Query: 297  KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            + GV PD    ++ I  A    + + A  +L+  ++ G  + I
Sbjct: 1125 RDGVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPI 1167


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 165/366 (45%), Gaps = 8/366 (2%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VP+ T  T  ++ S+C   +  + A +++  +   G+ A+   Y+ L+    K  ++D  
Sbjct: 71  VPDNTTLTV-VVQSLCLGDR-VDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEA 128

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +   M   G  P V TY ++I G  +A +V +A G    M ++   PD + + ALI  
Sbjct: 129 VALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGG 188

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +S  V R  ++L E+        PD +T   ++     AG   R R+   +  + +  
Sbjct: 189 FCKSRDVGRGLELLGEVTR--RGFTPDIVTYSTVIDGLCKAG---RLRDAVDIFEEMSCA 243

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            T   Y   I    + GD + A  +   M      PD V  + L+      G+++ A+E+
Sbjct: 244 PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYEL 303

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            Q+     +S  +++++SL+         + ALEL E +      PT+ T N ++   C 
Sbjct: 304 FQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK 363

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLV 445
            +Q+ K  E+++D +S G  PNT+TY+IL+  C R    +  L  L Q   E G  P  V
Sbjct: 364 ANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSV 423

Query: 446 MFKCII 451
               II
Sbjct: 424 AMYAII 429



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 167/378 (44%), Gaps = 12/378 (3%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTF 95
           R+ E + L+E M  +G       Y++     C++++ + EA  F + +     +P + T+
Sbjct: 124 RLDEAVALVETMAERGCAPTVVTYNSIITGFCRARR-VDEAHGFMEQMVAEGCHPDIITY 182

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
             L+     S+D     ++L  V   G   D   Y+T+I    K+G++    ++F EM  
Sbjct: 183 TALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSC 242

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           A   P   TY +LI G  +AG + +A    G M      PD V +  L++A  + G +D 
Sbjct: 243 A---PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDD 299

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A+++  +M A  + + PD +T  +L+      G+++ A E+ + I +     T   Y   
Sbjct: 300 AYELFQQMVA--NKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCV 357

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG- 334
           ++   +      A  +  D   +G +P+ V  + L+     AG+ + A + L +  ++G 
Sbjct: 358 VDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGG 417

Query: 335 -ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
                +  Y+ ++ A         A++ YE M      P  +T   ++ ALC   Q  + 
Sbjct: 418 PCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQA 477

Query: 394 MEVLSDMKSLGLCPNTIT 411
            E+L +M   G  P   T
Sbjct: 478 HELLEEMIKYGHTPGPGT 495



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 156/328 (47%), Gaps = 12/328 (3%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPNPTLSTFNMLMSVCA 103
           ++LL ++ R+G       Y      +CK+ + +++A   F+ +   PT  T+N L+    
Sbjct: 199 LELLGEVTRRGFTPDIVTYSTVIDGLCKAGR-LRDAVDIFEEMSCAPTAITYNSLIGGYC 257

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
            + D + A ++L  + +     D   YTTL++   K G++D  +E+F +MV   + P+V 
Sbjct: 258 RAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVV 317

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           T+ +L+DG    G++  A      +  +   P    +N ++    ++  V +A +++A+ 
Sbjct: 318 TFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADF 377

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-----EVYTIAINC 278
            +      P+ +T   L+  C  AG+ D+A    + + + N +G P      +Y I ++ 
Sbjct: 378 RS--RGFVPNTVTYNILVAGCCRAGRTDQA---LQYLDQLNSEGGPCPTSVAMYAIILDA 432

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             + G  + A   Y++M ++G +P     + ++     A + + A E+L+E    G + G
Sbjct: 433 LCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPG 492

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMK 366
             +  +++ A   A   QKA EL   ++
Sbjct: 493 PGTCDAVVSAYCRAGMIQKADELASELR 520



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 164/363 (45%), Gaps = 30/363 (8%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + P    +  +I G  +AG++  A G Y  M   +  PD + +  L+    ++  +  A 
Sbjct: 1   MNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAV 59

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE-VYKMIHKYNIKGTPEVYTIAI 276
            VL EM +  H   PD+ T+  ++++     +VD ARE V +M+H+  +      Y+  +
Sbjct: 60  QVLQEMVSARHV--PDNTTLTVVVQSLCLGDRVDDARELVEEMLHR-GMAANAITYSALV 116

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
           +   +    + A ++ + M ++G  P  V  +++I     A +V+ A   +++   +G  
Sbjct: 117 DGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCH 176

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             II+Y++L+G    +++  + LEL   +      P + T + +I  LC   +L   +++
Sbjct: 177 PDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDI 236

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CI 450
             +M      P  ITY+ L+    R  D++  + LL +  +D   P++V +       C 
Sbjct: 237 FEEMSC---APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCK 293

Query: 451 IGMCSRRYE-----KARTLNEHVLSFNS------GRPQIENKWTSLALMVYREAIVAGTI 499
           +G     YE      A  L+  V++F S      G  ++E+     AL +  E    G  
Sbjct: 294 MGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMED-----ALELLEEITRRGCP 348

Query: 500 PTV 502
           PT+
Sbjct: 349 PTI 351


>gi|357153642|ref|XP_003576519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Brachypodium distachyon]
          Length = 620

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 176/373 (47%), Gaps = 3/373 (0%)

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           F +L   P L   N ++     ++  +  +++   +   G+      Y TL+  C   G 
Sbjct: 116 FCRLPTLPALPACNAILDGLVKARRFDRVWKLFDEMLSRGMVPSLVTYNTLVNACRHEGD 175

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +   +EV+++MV   I+PNV TY  +I    + G V +A   + +M+   V+P+   +NA
Sbjct: 176 MTKAWEVWNQMVARRIDPNVVTYSTMICVLCEEGCVIEAERLFIMMKETGVQPNLYTYNA 235

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L+++  +   V+R   +  E+      + P+ + I  L+     A ++   +  +  +H+
Sbjct: 236 LMSSHCKRDGVNRTLTLYQELLKS--GLVPNAVIITTLIGGFFLANRISDVKNAFLEMHR 293

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           Y I  T  VY   I+   ++G  + A +VY DMT+ G+ PDE   S ++      G+V+ 
Sbjct: 294 YGIAPTVPVYNSLIDGAFRSGYAQEALTVYQDMTRVGLCPDEFTCSIIVRGLCCGGQVQV 353

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A   L+  +  GI++   +Y++L+       N  +AL     M  + ++P V T ++LI 
Sbjct: 354 ATRFLELMQQSGINLNAAAYNALIDEHCKDGNLAEALATCTRMNEVGIEPNVVTYSSLID 413

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
                 ++   M +  +M + G+ PN +TY+ ++    +  D++    L  +  E G+  
Sbjct: 414 GHSKKRKMEIAMGIYMEMVAKGVEPNVLTYTAMIHGHAKFGDLDAAFRLHKEMAEKGISS 473

Query: 443 NLVMFKCII-GMC 454
           N +    ++ G+C
Sbjct: 474 NAITVSVLVDGLC 486



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 150/328 (45%), Gaps = 11/328 (3%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+   ++ G  D    VF  +      P +    A++DG  KA +  + +  +  M S+ 
Sbjct: 99  LVIALSQMGLHDDALSVFCRLPTL---PALPACNAILDGLVKARRFDRVWKLFDEMLSRG 155

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + P  V +N L+ AC   G + +A++V  +M A    +DP+ +T   ++      G V  
Sbjct: 156 MVPSLVTYNTLVNACRHEGDMTKAWEVWNQMVAR--RIDPNVVTYSTMICVLCEEGCVIE 213

Query: 253 AREVYKMIHKYNIKGTPEVYT---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           A  ++ M+ +  ++  P +YT   +  + C + G      ++Y ++ K G++P+ V ++ 
Sbjct: 214 AERLFIMMKETGVQ--PNLYTYNALMSSHCKRDG-VNRTLTLYQELLKSGLVPNAVIITT 270

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     A ++        E    GI+  +  Y+SL+     +   Q+AL +Y+ M  + 
Sbjct: 271 LIGGFFLANRISDVKNAFLEMHRYGIAPTVPVYNSLIDGAFRSGYAQEALTVYQDMTRVG 330

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           L P   T + ++  LC G Q+      L  M+  G+  N   Y+ L+    +  ++   L
Sbjct: 331 LCPDEFTCSIIVRGLCCGGQVQVATRFLELMQQSGINLNAAAYNALIDEHCKDGNLAEAL 390

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
              ++  E G+ PN+V +  +I   S++
Sbjct: 391 ATCTRMNEVGIEPNVVTYSSLIDGHSKK 418



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 104/460 (22%), Positives = 187/460 (40%), Gaps = 69/460 (15%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN L+     +G +++  ++   M  + + D + V ++    V   +  + EA R F
Sbjct: 160 LVTYNTLVNACRHEGDMTKAWEVWNQMVARRI-DPNVVTYSTMICVLCEEGCVIEAERLF 218

Query: 85  KLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTC 137
            ++      P L T+N LMS   S    +G  + L L QE   +GL  +  + TTLI   
Sbjct: 219 IMMKETGVQPNLYTYNALMS---SHCKRDGVNRTLTLYQELLKSGLVPNAVIITTLIGGF 275

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
             + ++  +   F EM   GI P V  Y +LIDG  ++G   +A   Y  M    + PD 
Sbjct: 276 FLANRISDVKNAFLEMHRYGIAPTVPVYNSLIDGAFRSGYAQEALTVYQDMTRVGLCPDE 335

Query: 198 VV-----------------------------------FNALITACGQSGAVDRAFDVLAE 222
                                                +NALI    + G +  A      
Sbjct: 336 FTCSIIVRGLCCGGQVQVATRFLELMQQSGINLNAAAYNALIDEHCKDGNLAEALATCTR 395

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           MN EV  ++P+ +T  +L+   +   +++ A  +Y  +    ++     YT  I+  ++ 
Sbjct: 396 MN-EVG-IEPNVVTYSSLIDGHSKKRKMEIAMGIYMEMVAKGVEPNVLTYTAMIHGHAKF 453

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           GD + A  ++ +M +KG+  + + +S L+D      +V+ A   + +   Q     I S+
Sbjct: 454 GDLDAAFRLHKEMAEKGISSNAITVSVLVDGLCRESRVQDAVMFIMKYAGQKKPGDINSF 513

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
                 CSN          Y   +   +  +V+ M  +     DG Q  +  +  S M+ 
Sbjct: 514 ------CSN----------YTTEEDCSILNSVTYMTLIYGLYIDG-QYHEAGKFFSCMRE 556

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
             + P++ TYS+L+        V   +ML +   + GV P
Sbjct: 557 SDMVPDSFTYSLLIRGQCMLGYVLNAMMLYADMVKIGVKP 596



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 124/306 (40%), Gaps = 25/306 (8%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           + + ++  +  YN LI    R G   E + + +DM R GL   +         +C   + 
Sbjct: 292 HRYGIAPTVPVYNSLIDGAFRSGYAQEALTVYQDMTRVGLCPDEFTCSIIVRGLCCGGQ- 350

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           ++ A RF +L+     N   + +N L+       +   A      + E G++ +   Y++
Sbjct: 351 VQVATRFLELMQQSGINLNAAAYNALIDEHCKDGNLAEALATCTRMNEVGIEPNVVTYSS 410

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           LI   +K  K++    ++ EMV  G+EPNV TY A+I G AK G +  AF  +  M  K 
Sbjct: 411 LIDGHSKKRKMEIAMGIYMEMVAKGVEPNVLTYTAMIHGHAKFGDLDAAFRLHKEMAEKG 470

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP----------------DHIT 236
           +  + +  + L+    +   V  A   + +   +  P D                 + +T
Sbjct: 471 ISSNAITVSVLVDGLCRESRVQDAVMFIMKYAGQKKPGDINSFCSNYTTEEDCSILNSVT 530

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              L+      GQ   A + +  + + ++      Y++ I      G    A  +Y DM 
Sbjct: 531 YMTLIYGLYIDGQYHEAGKFFSCMRESDMVPDSFTYSLLIRGQCMLGYVLNAMMLYADMV 590

Query: 297 KKGVIP 302
           K GV P
Sbjct: 591 KIGVKP 596



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 33/232 (14%)

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           ++++     A+ + +  +L++ M S  + P++ T N L+ A      + K  EV + M +
Sbjct: 129 NAILDGLVKARRFDRVWKLFDEMLSRGMVPSLVTYNTLVNACRHEGDMTKAWEVWNQMVA 188

Query: 403 LGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 461
             + PN +TYS ++ V CE    +E   + +   KE GV PNL  +  ++    +R    
Sbjct: 189 RRIDPNVVTYSTMICVLCEEGCVIEAERLFI-MMKETGVQPNLYTYNALMSSHCKRDGVN 247

Query: 462 RTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN-ADI 520
           RTL                        +Y+E + +G +P   +++ ++G   L    +D+
Sbjct: 248 RTLT-----------------------LYQELLKSGLVPNAVIITTLIGGFFLANRISDV 284

Query: 521 RERLVE--NLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVP 568
           +   +E    G+ A  +   N  SLIDG     Y   A ++ ++    G+ P
Sbjct: 285 KNAFLEMHRYGI-APTVPVYN--SLIDGAFRSGYAQEALTVYQDMTRVGLCP 333


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/416 (27%), Positives = 184/416 (44%), Gaps = 20/416 (4%)

Query: 67  FFNVCKSQKAIK-EAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
           F   CK+      +AF FF L+    P P +S+FN L+   A        F +   ++ A
Sbjct: 61  FLRNCKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLA 120

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           GL  D    + L        +V         ++  G  PNV TY  LI G     ++++A
Sbjct: 121 GLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEA 180

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM--NAEVHPVD--PDHITI 237
              +  M+     P+ V +  LI    Q+G V+ A  +  EM  +A  + V+  P  IT 
Sbjct: 181 TRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITY 240

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAIN--CCSQTGDWEFACSVYD 293
             ++      G+ D A+E+++ +    +   P+V  Y+  I+  CC+  G W+ +  ++D
Sbjct: 241 SIIIDGLCKVGREDEAKELFEEMKAQGM--IPDVISYSTLIHGFCCA--GKWDQSKHLFD 296

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +M  +GV PD V  S LID     GKV  A ++L+    +GI   +I+Y+SL+       
Sbjct: 297 EMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVG 356

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           +   A EL+  M S  L+P   +   LI   C   ++ + M + ++M  +G  PN  TY 
Sbjct: 357 DLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYG 416

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR--YEKARTLNE 466
            LL    +K  V     L    K  GV  N  ++   + G+C     +E     NE
Sbjct: 417 TLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNE 472



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 193/434 (44%), Gaps = 16/434 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N L    R+SE +  +  + R+G +     Y      +C   + I EA R F    KL  
Sbjct: 134 NCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHR-ISEATRLFLRMQKLGC 192

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLR--LVQEAGLKADCK----LYTTLITTCAKSGK 142
            P   T+  L+     + +   A ++ +  L   +    +CK     Y+ +I    K G+
Sbjct: 193 TPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGR 252

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            D   E+F EM   G+ P+V +Y  LI G   AG+  ++   +  M  + V+PD V F+ 
Sbjct: 253 EDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSV 312

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    + G V  A  +L  M      + P+ IT  +L+      G ++ ARE++  +  
Sbjct: 313 LIDTLCKEGKVTEAKKLLEVMIQR--GIVPNLITYNSLIDGFCMVGDLNSARELFLSMPS 370

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             ++     YT  IN   +T   + A ++Y++M + G  P+      L+      GKV  
Sbjct: 371 KGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGD 430

Query: 323 AFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           A ++    K  G+S     Y   + G C N   ++ A+EL+  +KS   K  +   + LI
Sbjct: 431 AKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFE-AMELFNELKSYNFKLNIENYSCLI 489

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   +L    E+   +   GL P+ +TY+I++    +   V+   +L  + +E+G  
Sbjct: 490 DGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCT 549

Query: 442 PNLVMFKCII-GMC 454
           P+++ +  ++ G C
Sbjct: 550 PDIIAYNTLLCGFC 563



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 191/447 (42%), Gaps = 21/447 (4%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LI+    + RISE   L   M++ G       Y      +C++   +  A +  K 
Sbjct: 163 TYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGN-VNIALKLHKE 221

Query: 87  VPN----------PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           + N          P + T+++++  +C   ++ E A ++   ++  G+  D   Y+TLI 
Sbjct: 222 MLNDASQYGVNCKPGVITYSIIIDGLCKVGREDE-AKELFEEMKAQGMIPDVISYSTLIH 280

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
               +GK D    +F EMV+ G++P++ T+  LID   K G+V +A     +M  + + P
Sbjct: 281 GFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVP 340

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + + +N+LI      G ++ A ++   M ++   ++PD I+   L+       +V  A  
Sbjct: 341 NLITYNSLIDGFCMVGDLNSARELFLSMPSK--GLEPDEISYTTLINGYCKTWKVKEAMN 398

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +Y  + +         Y   +    Q G    A  ++  M   GV  +       +D   
Sbjct: 399 LYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLC 458

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
               +  A E+  E K+    + I +YS L+     A   + A EL+E +    L+P V 
Sbjct: 459 KNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVV 518

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N +I   C   Q+     +   M+  G  P+ I Y+ LL      + +E  + LL + 
Sbjct: 519 TYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKM 578

Query: 436 KEDGVIPNLVMFKCIIGMCSR--RYEK 460
            +  V PN      ++ M  +  +Y+K
Sbjct: 579 VQKDVSPNAASCTIVVDMLCKDEKYKK 605



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 169/367 (46%), Gaps = 7/367 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L + GR  E  +L E+M+ +G++     Y       C + K  +    F ++V     P 
Sbjct: 247 LCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPD 306

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           + TF++L+ ++C   K +E A ++L ++ + G+  +   Y +LI      G +++  E+F
Sbjct: 307 MVTFSVLIDTLCKEGKVTE-AKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELF 365

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M + G+EP+  +Y  LI+G  K  +V +A   Y  M      P+   +  L+    Q 
Sbjct: 366 LSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQK 425

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G V  A  +   M  + + V  +    G  +        +  A E++  +  YN K   E
Sbjct: 426 GKVGDAKKLFGVM--KTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIE 483

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y+  I+   + G  E A  +++ ++++G+ PD V  + +I      G+V+ A  + ++ 
Sbjct: 484 NYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKM 543

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           +  G +  II+Y++L+         ++ ++L   M    + P  ++   ++  LC  ++ 
Sbjct: 544 EENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKY 603

Query: 391 PKTMEVL 397
            K +++L
Sbjct: 604 KKFVDLL 610



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 84/204 (41%), Gaps = 17/204 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L ++G++ +   L   M+  G+    ++Y      +CK+   + EA   F       L +
Sbjct: 422 LFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKND-CLFEAMELFN-----ELKS 475

Query: 95  FNMLMSV----------CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +N  +++          C + K  E A+++   + + GL+ D   Y  +I    K G+VD
Sbjct: 476 YNFKLNIENYSCLIDGLCKAGK-LETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVD 534

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +F +M   G  P++  Y  L+ G  +  ++ +       M  K+V P+      ++
Sbjct: 535 NANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVV 594

Query: 205 TACGQSGAVDRAFDVLAEMNAEVH 228
               +     +  D+L +   + H
Sbjct: 595 DMLCKDEKYKKFVDLLPKFPVQRH 618


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/444 (24%), Positives = 200/444 (45%), Gaps = 30/444 (6%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQK 75
           N  H VS   HS               LL D  R G    ++DM  + + +   +  + +
Sbjct: 107 NEKHTVSSVFHS---------------LLLDGGRPGATALIIDMLVLAYVKNLELHCAYE 151

Query: 76  AIKEAFRF-FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           A   A  + FKL    +L++ N L+S             V + + +  +  +   +   I
Sbjct: 152 AFTRAKDYGFKL----SLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFI 207

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR---SK 191
               ++GK++   +   +M   GI PNV TY  L+DG  K G   K + A   M+   + 
Sbjct: 208 NGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLAN 267

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + P+ V FN LI    +   V  A     EM  +   + P+ +T  +L+    N G+++
Sbjct: 268 KICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQ--GLKPNIVTYNSLINGLCNNGKLE 325

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A +++  +    +K     Y   IN   +    + A  V+DD++K+ ++P+ +  + +I
Sbjct: 326 EAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMI 385

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D     G +E  F +     ++GI   + +Y+ L+      ++ Q A EL   M++  LK
Sbjct: 386 DAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLK 445

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
             V T N LI  LC  D+     ++L++M +LGL PN +TY+ L+     +  ++  L +
Sbjct: 446 GDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNV 505

Query: 432 LSQAKEDGVIPNLVMFKCII-GMC 454
            ++ +++   PN+V +  +I G C
Sbjct: 506 RTRMEKERKQPNVVTYNVLIKGYC 529



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 171/364 (46%), Gaps = 7/364 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--E 148
            L+TFN+ ++    +     A   +  ++  G+  +   Y TL+    K G    M+  E
Sbjct: 199 NLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAE 258

Query: 149 VF-HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            F  EM+   I PN  T+  LIDG  K   VA A  A+  M+ + +KP+ V +N+LI   
Sbjct: 259 AFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGL 318

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
             +G ++ A D+  +M      + P+ +T  AL+        +  A +V+  + K  +  
Sbjct: 319 CNNGKLEEAIDLWDKMVG--LGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVP 376

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               +   I+   + G  E   S+   M  +G++P+    + LI        ++AA E+L
Sbjct: 377 NVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELL 436

Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            E +N+G+   +++Y+ L+ G C N K+ + A +L   M ++ LKP   T N L+   C 
Sbjct: 437 NEMENKGLKGDVVTYNILIDGLCKNDKS-RNAEKLLNEMFNLGLKPNHVTYNTLMDGYCM 495

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L   + V + M+     PN +TY++L+    + + +E    LL++  E G+ PN   
Sbjct: 496 EGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTT 555

Query: 447 FKCI 450
           +  +
Sbjct: 556 YDIV 559



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 149/327 (45%), Gaps = 37/327 (11%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+    K+ ++   +E F    + G + ++ +   L+    K  ++      Y  M  + 
Sbjct: 136 LVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRR 195

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           +  +   FN  I    ++G +++A D + +M A    + P+ +T   L+      G    
Sbjct: 196 IHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKA--WGISPNVVTYNTLVDGYCKRGS--- 250

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A ++YK                             A +   +M    + P+EV  + LID
Sbjct: 251 AGKMYK-----------------------------AEAFMKEMLANKICPNEVTFNTLID 281

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLK 371
                  V AA +  +E + QG+   I++Y+SL+ G C+N K  ++A++L++ M  + LK
Sbjct: 282 GFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGK-LEEAIDLWDKMVGLGLK 340

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P + T NALI   C    + +  +V  D+    L PN IT++ ++ A  ++  +E G  L
Sbjct: 341 PNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSL 400

Query: 432 LSQAKEDGVIPNLVMFKCII-GMCSRR 457
            S   ++G++PN+  + C+I G+C ++
Sbjct: 401 CSSMLDEGILPNVSTYNCLIAGLCRKQ 427



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 130/315 (41%), Gaps = 64/315 (20%)

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
           ++ GD E+   VY +M K+ +  +    +  I+    AGK+  A + +++ K  GIS  +
Sbjct: 179 NKIGDVEY---VYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNV 235

Query: 340 ISYSSLM-GACS--NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
           ++Y++L+ G C   +A    KA    + M + K+ P   T N LI   C  + +    + 
Sbjct: 236 VTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKA 295

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
             +M+  GL PN +TY+ L+        +E  + L  +    G+ PN+V +  +I G C 
Sbjct: 296 FEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCK 355

Query: 456 RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLP 515
           ++  K  T                         V+ +      +P V   + ++      
Sbjct: 356 KKMMKEAT------------------------KVFDDVSKQELVPNVITFNTMI------ 385

Query: 516 YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEI 575
            +A  +E ++E  G S        LCS             S+L+E    GI+P VS    
Sbjct: 386 -DAYCKEGMMEE-GFS--------LCS-------------SMLDE----GILPNVSTYNC 418

Query: 576 PVVVDARKLEIHTAK 590
            +    RK ++  AK
Sbjct: 419 LIAGLCRKQDLQAAK 433



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 7/145 (4%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEA 80
            + +YN LI    R+  +    +LL +ME KGL      Y+     +CK+ K   A K  
Sbjct: 412 NVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLL 471

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
              F L   P   T+N LM         + A  V   +++   + +   Y  LI    K 
Sbjct: 472 NEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKI 531

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTY 165
            K++A   + +EM+  G+ PN  TY
Sbjct: 532 NKLEAANGLLNEMLEKGLNPNRTTY 556


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 176/401 (43%), Gaps = 39/401 (9%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MFEVFH 151
           T+N L+  CA + D E A  ++  ++  G + D   Y+++I    +S K+D+  + +++ 
Sbjct: 171 TYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQKLYA 230

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           E+    IE + H    +I G +KAG   +A     + +S  + P      A+I A G SG
Sbjct: 231 EIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSG 290

Query: 212 AVD------------------RAFD-----------------VLAEMNAEVHPVDPDHIT 236
                                RA++                 V++EM  E   V PD  T
Sbjct: 291 RTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEM--EKAGVKPDEQT 348

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              L+   A+AG+ + AR V K +   N++    V++  +      G+W+ +  V  DM 
Sbjct: 349 YSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMK 408

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
             GV PD  F + +ID  G    ++ A    +   ++GI   I+++++L+     +    
Sbjct: 409 SSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHD 468

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            A EL+  M+     P ++T N +I ++ +  +  +    LS M+S GL PN+ITY+ L+
Sbjct: 469 MAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLV 528

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
               +       +  L   K  G  P   M+  +I   ++R
Sbjct: 529 DVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQR 569



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 154/332 (46%), Gaps = 2/332 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+     +   + A  V+  +++AG+K D + Y+ LI   A +G+ ++   V
Sbjct: 309 PRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIV 368

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM  + ++PN + +  ++      G+  K+F     M+S  V+PDR  +N +I   G+
Sbjct: 369 LKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGK 428

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A      M +E  P  PD +T   L+     +G+ D A E++  + +       
Sbjct: 429 YNCLDHAMATFERMLSEGIP--PDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCI 486

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN   +   WE   +    M  +G+ P+ +  + L+D  G +G+   A E L+ 
Sbjct: 487 TTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEV 546

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K+ G       Y++L+ A +     + A+  +  M +  L P++  +N+LI A  +  +
Sbjct: 547 LKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRR 606

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
             +   VL  MK   + P+ +TY+ L+ A  R
Sbjct: 607 DAEAFAVLQYMKENNIEPDVVTYTTLMKALIR 638



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 177/432 (40%), Gaps = 13/432 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF--RFF 84
           +YN LI    R G + + ++L+  M R G    D V ++           I      + +
Sbjct: 171 TYNALIGACARNGDVEKALNLMSKMRRDGY-QPDFVNYSSIIQYLTRSNKIDSPILQKLY 229

Query: 85  KLVPNPTLSTFNMLMS--VCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +    +     LM+  +   SK  D   A + L + Q  GL         +I     S
Sbjct: 230 AEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNS 289

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+      +F E+   G+EP    Y AL+ G  + G +  A      M    VKPD   +
Sbjct: 290 GRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTY 349

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + LI     +G  + A  VL EM  E   V P+      ++    + G+  ++ +V K +
Sbjct: 350 SLLIDVYAHAGRWESARIVLKEM--EASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDM 407

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               ++     Y + I+   +    + A + ++ M  +G+ PD V  + LID    +G+ 
Sbjct: 408 KSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRH 467

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A E+  E + +G S  I +Y+ ++ +    + W++       M+S  L+P   T   L
Sbjct: 468 DMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTL 527

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +       +    +E L  +KS G  P +  Y+ L+ A  ++   E+ +        +G+
Sbjct: 528 VDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGL 587

Query: 441 IPNLVMFKCIIG 452
            P+L+    +I 
Sbjct: 588 TPSLLALNSLIN 599



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 164/347 (47%), Gaps = 19/347 (5%)

Query: 31  SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVY--------HARFFNVCKSQKAIK 78
           +YN L    +R G + +   ++ +ME+ G+   ++ Y        HA      +S + + 
Sbjct: 313 AYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHA---GRWESARIVL 369

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +      + PN  +  F+ +++      + + +FQVL+ ++ +G++ D   Y  +I T  
Sbjct: 370 KEMEASNVQPNSYV--FSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFG 427

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K   +D     F  M++ GI P++ T+  LID   K+G+   A   +  M+ +   P   
Sbjct: 428 KYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCIT 487

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +N +I + G+    ++    L++M ++   + P+ IT   L+     +G+   A E  +
Sbjct: 488 TYNIMINSMGEQQRWEQVTAFLSKMQSQG--LQPNSITYTTLVDVYGKSGRFSDAIECLE 545

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
           ++     K T  +Y   IN  +Q G  E A + +  MT +G+ P  + L++LI+  G   
Sbjct: 546 VLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDR 605

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           +   AF +LQ  K   I   +++Y++LM A    + +QK   +YE M
Sbjct: 606 RDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEM 652



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 134/544 (24%), Positives = 226/544 (41%), Gaps = 68/544 (12%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEG---AFQVLRLVQEAGLKADCKL-YTTLITTCAK 139
           ++ VP P    F  L S+CASS  S     A+ V+  +Q+  L    +L Y+ LI    +
Sbjct: 94  YRAVPAPLWHAF--LKSLCASSSSSSSIALAYAVVSWLQKHNLCFSYELLYSILINALGR 151

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           S K+   F +    V   +     TY ALI  CA+ G V KA      MR    +PD V 
Sbjct: 152 SEKLYEAFLLSQRQVLTPL-----TYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVN 206

Query: 200 FNALITACGQSGAVD-------------------------------------RAFDVLAE 222
           ++++I    +S  +D                                     RA   LA 
Sbjct: 207 YSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAM 266

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
             A+ + ++P   T+ A++ A  N+G+   A  +++ I +  ++     Y   +    +T
Sbjct: 267 --AQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRT 324

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G  + A  V  +M K GV PDE   S LID   HAG+ E+A  +L+E +   +      +
Sbjct: 325 GSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVF 384

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           S ++    +   WQK+ ++ + MKS  ++P     N +I      + L   M     M S
Sbjct: 385 SRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLS 444

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEK 460
            G+ P+ +T++ L+    +    ++   L S+ ++ G  P +  +  +I      +R+E+
Sbjct: 445 EGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQ 504

Query: 461 ARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV-SKVLGCLQLPYNAD 519
                  + S   G       +T+L  +  +    +  I  +EV+ S         YNA 
Sbjct: 505 VTAFLSKMQS--QGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNAL 562

Query: 520 IR---ERLVENLGVSADALKRSN--------LCSLIDGFGE--YDPRAFSLLEEAASFGI 566
           I    +R +  L V+A  L  +         L SLI+ FGE   D  AF++L+      I
Sbjct: 563 INAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNI 622

Query: 567 VPCV 570
            P V
Sbjct: 623 EPDV 626


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 214/473 (45%), Gaps = 21/473 (4%)

Query: 17  KHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVC 71
           K       V+  L +Y+ +I    +QG +    ++L +M  R G+      Y +    +C
Sbjct: 65  KEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLC 124

Query: 72  KSQKAIK--EAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADC 127
           +  K  +  E  R  KL    P   TF+ L++   +++  + A ++ + ++  +  K D 
Sbjct: 125 RDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDV 184

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
             YT LI    KSG ++   ++   M      PNV TY +L+ G  KAG + +A   +  
Sbjct: 185 VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRR 244

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M SK   P+ V +  LI     +  VD A  ++ EM A   P  PD ++  AL+      
Sbjct: 245 MTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCP--PDTVSYNALLDGYCRL 302

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM-TKKGVIPDEVF 306
           G+++ A++++K +   +       YT  +         E A  + ++M T  G+ PD V 
Sbjct: 303 GRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVT 362

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            S ++     A +   A E +QE   + ++   ++YSSL+     A     A+E+ ++M 
Sbjct: 363 YSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMV 422

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           + +++P+V T N++I ALC    + +  ++L  M + GL P  +TY+ LL    R   +E
Sbjct: 423 NKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRME 482

Query: 427 VGLMLLSQAK--------EDGVIPNLVMFKCIIGMC-SRRYEKARTLNEHVLS 470
           +   L    +           ++P       I G+C +R  +KA  + E + S
Sbjct: 483 IAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRS 535



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 190/391 (48%), Gaps = 9/391 (2%)

Query: 71  CKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKAD 126
           CK+ + +K+A   F+ +     P   T+N++++    ++ +  A++VL+ +++   +  D
Sbjct: 18  CKANQ-LKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPD 76

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
              Y+T+I    K G++D   E+  EMV   GI P+V TY +++DG  + G++ +A    
Sbjct: 77  LVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMV 136

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M+ K V+PD+  F+ALIT    +  VD A  +  E+        PD +T  AL+    
Sbjct: 137 REMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTS-SSWKPDVVTYTALIDGFC 195

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            +G +++A ++  ++           Y+  ++   + GD + A  ++  MT KG +P+ V
Sbjct: 196 KSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVV 255

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + LI     A KV+AA  ++ E          +SY++L+         ++A +L++ M
Sbjct: 256 TYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEM 315

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDD 424
            +    P   T   L+   C+  +L +   +L +MK+  G+ P+ +TYSI++    R   
Sbjct: 316 ATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKR 375

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
                  + +     V PN V +  +I G+C
Sbjct: 376 FVEAAEFIQEMIARNVAPNAVTYSSLIDGLC 406



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 170/356 (47%), Gaps = 12/356 (3%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +T +I    K+ ++      F +M    + PN  TY  +++G  KA   +KA+     MR
Sbjct: 10  WTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMR 68

Query: 190 -SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
             K+V PD V ++ +I    + G +DRA ++L EM      + PD +T  +++      G
Sbjct: 69  DGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTR-DGIAPDVVTYTSVVDGLCRDG 127

Query: 249 QVDRAREVYKMIHKYNIKGT-PEVYTIA--INCCSQTGDWEFACSVYDD-MTKKGVIPDE 304
           ++DRA E   M+ +  +KG  P+ +T +  I         + A  +Y + +T     PD 
Sbjct: 128 KMDRACE---MVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDV 184

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V  +ALID    +G +E A ++L   + +     +++YSSL+     A +  +AL+L+  
Sbjct: 185 VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRR 244

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M S    P V T   LI  LC   ++     ++ +M +    P+T++Y+ LL    R   
Sbjct: 245 MTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGR 304

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI 478
           +E    L  +      +P+ + + C++ G C + R E+AR L E++ +     P +
Sbjct: 305 IEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDV 360



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 154/310 (49%), Gaps = 6/310 (1%)

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           +P V T+  +IDG  KA Q+ +A   +  MR + V P+   +N ++    ++    +A++
Sbjct: 4   QPTVVTWTIIIDGFCKANQLKQALACFEKMR-EFVAPNERTYNVVVNGLCKARLTSKAYE 62

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAIN 277
           VL EM  +   V PD +T   ++      G++DRA E+ + M+ +  I      YT  ++
Sbjct: 63  VLKEMR-DGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVD 121

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA-KNQGIS 336
              + G  + AC +  +M  KGV PD+   SALI    +A KV+ A ++ +E   +    
Sbjct: 122 GLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWK 181

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             +++Y++L+     + N +KA+++   M+  K  P V T ++L+  LC    L + +++
Sbjct: 182 PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDL 241

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
              M S G  PN +TY+ L+        V+   +L+ +       P+ V +  ++ G C 
Sbjct: 242 FRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCR 301

Query: 456 R-RYEKARTL 464
             R E+A+ L
Sbjct: 302 LGRIEEAKQL 311



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 135/285 (47%), Gaps = 15/285 (5%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRL 117
           Y+A     C+  + I+EA + FK +      P   T+  L+   C +S+  E  F +  +
Sbjct: 292 YNALLDGYCRLGR-IEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENM 350

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
              AG+  D   Y+ ++   +++ +     E   EM+   + PN  TY +LIDG  KAG+
Sbjct: 351 KTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGR 410

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           V  A      M +K V+P    FN++I A  + G +D A+ +L  M A  H ++P  +T 
Sbjct: 411 VDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAA--HGLEPGMVTY 468

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKG------TPE-VYTIAINCCSQTGDWEFACS 290
             L++  +  G+++ A E+++++ K   K        PE  ++  I    +  + + A +
Sbjct: 469 TTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMA 528

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           V +++  +   P E    A++D    AG+ E A +++      G+
Sbjct: 529 VVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 14/171 (8%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R  R  E  + +++M  + +      Y +    +CK+ + +  A    K + N    P++
Sbjct: 372 RAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGR-VDHAMEVLKNMVNKRVEPSV 430

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            TFN ++       D + A+++L  +   GL+     YTTL+   +++G+++  +E+F  
Sbjct: 431 GTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEV 490

Query: 153 M--------VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
           M          A + P    + ALI G  KA ++ KA      +RS+  +P
Sbjct: 491 MRKKAKKSSSAANLVPE-QAFSALIRGLCKAREIDKAMAVVEELRSRECEP 540


>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 918

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 151/327 (46%), Gaps = 2/327 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T++ML++     KD   AF V     + GLK D  LY  +IT       +D    +  
Sbjct: 484 MKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVK 543

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M      P   T+  +I G A+AG++ +A   + +MR     P    +NALI    +  
Sbjct: 544 QMQKERYRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKR 603

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            + +A  +L +MN  V  V P+  T   LM+  A+ G  ++A + + ++    ++     
Sbjct: 604 KMAKAVAILDQMN--VAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVYT 661

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   +  C ++G  + A +V  +M+ K +  +    + LID     G V  A +++Q+ +
Sbjct: 662 YEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMR 721

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+   I +Y+S + AC  A + QKA E+ + M++  +KP + T   LI          
Sbjct: 722 KEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTLINGWARASMPE 781

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVA 418
           K +    +MK   L P+   Y  L+ +
Sbjct: 782 KALSCFEEMKLAELKPDKAAYHCLMTS 808



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 164/366 (44%), Gaps = 4/366 (1%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +  ++ +M       + E    V   ++E G       Y  LI    K GKV    ++  
Sbjct: 414 IDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSVISYGCLINLYTKIGKVSKALQISK 473

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQS 210
            M  +GI+ N+ TY  LI+G  K    A AF  +       +KPD V++N +ITA CG S
Sbjct: 474 MMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMS 533

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             +DRA  ++ +M  E +   P   T   ++   A AG++ RA E++ M+ +     T  
Sbjct: 534 N-MDRAICMVKQMQKERY--RPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVH 590

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   I    +      A ++ D M   GV P+E   + L+      G  E AF+     
Sbjct: 591 TYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVL 650

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           +N+G+ + + +Y +L+ +C  +   Q AL + + M +  +       N LI        +
Sbjct: 651 RNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDV 710

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            +  +++  M+  G+ P+  TY+  + AC +  D++    ++ + +  G+ PNL  +  +
Sbjct: 711 WEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTL 770

Query: 451 IGMCSR 456
           I   +R
Sbjct: 771 INGWAR 776



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 175/359 (48%), Gaps = 13/359 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------L 86
           N   + G++S+ + + + M+  G+    K Y +   N     K    AF  F+      L
Sbjct: 457 NLYTKIGKVSKALQISKMMKMSGIKHNMKTY-SMLINGFLKLKDWANAFSVFEDFTKDGL 515

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            P+  L   N++ + C  S + + A  +++ +Q+   +   + +  +I   A++G++   
Sbjct: 516 KPDVVLYN-NIITAFCGMS-NMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRA 573

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E+F  M  +G  P VHTY ALI G  +  ++AKA      M    V P+   +  L+  
Sbjct: 574 LEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQG 633

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
               G  ++AF   + +  E   ++ D  T  AL+K+C  +G++  A  V K +   NI 
Sbjct: 634 YASLGDTEKAFQYFSVLRNE--GLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIP 691

Query: 267 GTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
               VY I I+  ++ GD WE A  +   M K+GV+PD    ++ ++    AG ++ A E
Sbjct: 692 RNTFVYNILIDGWARRGDVWE-AADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATE 750

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           I+QE +  GI   + +Y++L+   + A   +KAL  +E MK  +LKP  +  + L+T+L
Sbjct: 751 IIQEMEAFGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAELKPDKAAYHCLMTSL 809



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 174/404 (43%), Gaps = 33/404 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P    + +++   A   D   A Q    +Q  G++    +Y++LI   A    +
Sbjct: 266 FERIKKPARKEYGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDM 325

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +       +M   GIE  + TY  ++ G AK G+   A   +   + K    + V + ++
Sbjct: 326 EEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAVTYGSI 385

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  Q+  +DRA  ++ EM  +    P+D                              
Sbjct: 386 IYAHCQTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGF 445

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  I+ G L+      G+V +A ++ KM+    IK   + Y++ IN   +  DW  A S
Sbjct: 446 SPSVISYGCLINLYTKIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFS 505

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V++D TK G+ PD V  + +I        ++ A  ++++ + +       ++  ++   +
Sbjct: 506 VFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFA 565

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A   ++ALE+++ M+     PTV T NALI  L +  ++ K + +L  M   G+ PN  
Sbjct: 566 RAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEH 625

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+ L+       D E      S  + +G+  ++  ++ ++  C
Sbjct: 626 TYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSC 669



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 193/441 (43%), Gaps = 11/441 (2%)

Query: 22  AHDVSEQLHSYNRLIRQ---GR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +    H Y+ LI     GR + E +  +  M+ +G+      Y        K  KA 
Sbjct: 302 ARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGKA- 360

Query: 78  KEAFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
             A  +FK     +P+    T+  ++     + + + A  ++R ++  G+ A   +Y T+
Sbjct: 361 DAADHWFKEAKEKLPSLNAVTYGSIIYAHCQTCNMDRAEALVREMEVQGIDAPIDIYHTM 420

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +      G  +    VF  +   G  P+V +YG LI+   K G+V+KA     +M+   +
Sbjct: 421 MDGYTMIGNEEKCLIVFDRLKECGFSPSVISYGCLINLYTKIGKVSKALQISKMMKMSGI 480

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           K +   ++ LI    +      AF V  +   +   + PD +    ++ A      +DRA
Sbjct: 481 KHNMKTYSMLINGFLKLKDWANAFSVFEDFTKD--GLKPDVVLYNNIITAFCGMSNMDRA 538

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             + K + K   + T   +   I+  ++ G+   A  ++D M + G IP     +ALI  
Sbjct: 539 ICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILG 598

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
                K+  A  IL +    G+     +Y++LM   ++  + +KA + +  +++  L+  
Sbjct: 599 LVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEID 658

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           V T  AL+ + C   ++   + V  +M +  +  NT  Y+IL+    R+ DV     L+ 
Sbjct: 659 VYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQ 718

Query: 434 QAKEDGVIPNLVMFKCIIGMC 454
           Q +++GV+P++  +   +  C
Sbjct: 719 QMRKEGVLPDIHTYTSFVNAC 739



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 12/191 (6%)

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + +   ++ GD   A   ++ M  +G+ P     S+LI        +E A   +++ K
Sbjct: 277 YGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMK 336

Query: 332 NQGISVGIISYSSL------MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            +GI + I++YS +      MG    A +W K  E  E + S+       T  ++I A C
Sbjct: 337 EEGIEMTIVTYSIIVGGFAKMGKADAADHWFK--EAKEKLPSL----NAVTYGSIIYAHC 390

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               + +   ++ +M+  G+      Y  ++       + E  L++  + KE G  P+++
Sbjct: 391 QTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSVI 450

Query: 446 MFKCIIGMCSR 456
            + C+I + ++
Sbjct: 451 SYGCLINLYTK 461



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 36/171 (21%), Positives = 71/171 (41%), Gaps = 36/171 (21%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M ++G+L                    
Sbjct: 687 AKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGVL-------------------- 726

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   ++ C  + D + A ++++ ++  G+K + K YTTLI   
Sbjct: 727 ------------PDIHTYTSFVNACCKAGDMQKATEIIQEMEAFGIKPNLKTYTTLINGW 774

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           A++   +     F EM  A ++P+   Y  L+         A+++   G++
Sbjct: 775 ARASMPEKALSCFEEMKLAELKPDKAAYHCLMTSLLSRATFAQSYVYSGLL 825


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/504 (21%), Positives = 226/504 (44%), Gaps = 51/504 (10%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y  L   GR+ E   +  +M+++GL+      ++   ++CK  ++ KEA  FF  + 
Sbjct: 342 IHGYATL---GRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRS-KEAAEFFDSMT 397

Query: 89  ----NPTLSTFNMLMSVCASSKDSEGAFQ----VLRLVQEAGLKADCKLYTTLITTCAKS 140
                P + ++  L+   AS    EG F     +   ++  G+ A+C ++T LI   AK 
Sbjct: 398 AKGHKPDIFSYCTLLHGYAS----EGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKR 453

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G VD    +F EM   G+ P+V TY  +I   ++ G++  A   +  M ++ ++P+  V+
Sbjct: 454 GMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVY 513

Query: 201 NALITACGQSGAVDRAFDVLAEM-NAEVHPVD---------------------------- 231
           +++I      G + +A ++++EM N  +   D                            
Sbjct: 514 SSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLAT 573

Query: 232 -----PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
                P  IT  +L+      G++D+A ++   +    ++     Y   ++   + G   
Sbjct: 574 DIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRIN 633

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
              +++ +M +KGV P+ V    ++     AG+  AA +   E    G +V +  Y  ++
Sbjct: 634 DGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIIL 693

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
           G         +A+ L++ + ++ +K +++ +N +I A+    +  +  E+ + + + GL 
Sbjct: 694 GGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLL 753

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 466
           PN  TY ++++   +   VE    + S  ++ G++P   +   II M   + E A+  N 
Sbjct: 754 PNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGN- 812

Query: 467 HVLSFNSGRPQIENKWTSLALMVY 490
           ++   +  R  +E   TSL L ++
Sbjct: 813 YLSKVDGKRILLEASTTSLMLSLF 836



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 212/494 (42%), Gaps = 35/494 (7%)

Query: 45  IDLLEDMERKG------LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML 98
           +DLL+ M ++G      ++    V H  FFN  ++ KA        +    P + T+N++
Sbjct: 248 LDLLQMMAKQGGACSPDVVAYSTVIHG-FFNEGETGKACSLFHEMTRQGVKPDVVTYNLI 306

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           +     ++  + A  VLR +   G + D   Y+ +I   A  G++    ++F EM   G+
Sbjct: 307 IDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGL 366

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
            PN+ T  + +    K G+  +A   +  M +K  KPD   +  L+      G       
Sbjct: 367 IPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIG 426

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           +   M +     +    TI  L+ A A  G VD A  ++  + +  +      Y+  I+ 
Sbjct: 427 LFNSMKSNGIAANCHVFTI--LIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVIST 484

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGI-S 336
            S+ G    A   ++ M  +G+ P+    S++I  F  H G V+A  E++ E  N+GI  
Sbjct: 485 FSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAK-ELVSEMINKGIPR 543

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             I+ +SS++ +         A ++++    I  +P V T N+LI   C   ++ K  ++
Sbjct: 544 PDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKI 603

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L  M+ +G+ P+ +TY+ LL    +   +  GL L  + +  GV PN V +  ++     
Sbjct: 604 LDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGL-- 661

Query: 457 RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 516
                         F +GR       T  A   + E I +GT  TV +   +LG L    
Sbjct: 662 --------------FRAGR-------TVAARKKFHEMIESGTTVTVSIYGIILGGLCRNN 700

Query: 517 NADIRERLVENLGV 530
            AD    L + LG 
Sbjct: 701 CADEAIILFQKLGT 714



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 171/419 (40%), Gaps = 15/419 (3%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           A F  VC+ +   + A         PT  T+N+LM  C  ++  +    +   +   GLK
Sbjct: 138 ALFNRVCREEAGTQVAV--------PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLK 189

Query: 125 ADCKLYTTLIT-TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
            D     TL+   C  +   +A+  + H M   G  PN  +Y  ++          +A  
Sbjct: 190 MDQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALD 249

Query: 184 AYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +M  +     PD V ++ +I      G   +A  +  EM  +   V PD +T   ++
Sbjct: 250 LLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQ--GVKPDVVTYNLII 307

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            A   A  +D+A  V + +     +     Y+  I+  +  G  + A  ++ +M K+G+I
Sbjct: 308 DALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLI 367

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P+ V  ++ +      G+ + A E       +G    I SY +L+   ++   +   + L
Sbjct: 368 PNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGL 427

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           +  MKS  +         LI A      +   M + ++M+  G+ P+ +TYS ++    R
Sbjct: 428 FNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSR 487

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQI 478
              +   +   +Q    G+ PN  ++  II G C      KA+ L   +++    RP I
Sbjct: 488 MGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDI 546



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 145/333 (43%), Gaps = 16/333 (4%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN----PTL 92
            G + +  +L+ +M  KG+   D V+ +   N +CK  + + +A   F L  +    P +
Sbjct: 523 HGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGR-VMDAHDIFDLATDIGERPGV 581

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            TFN L+         + AF++L  ++  G++ D   Y TL+    K+G+++    +F E
Sbjct: 582 ITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFRE 641

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G++PN  TYG ++ G  +AG+   A   +  M          ++  ++    ++  
Sbjct: 642 MQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNC 701

Query: 213 VDRA---FDVLAEMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            D A   F  L  MN +        ITI   ++ A     + + A+E++  I    +   
Sbjct: 702 ADEAIILFQKLGTMNVKFS------ITILNTMINAMYKVQRKEEAKELFATISASGLLPN 755

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y + I    + G  E A +++  M K G++P    L+ +I      G++  A   L 
Sbjct: 756 ESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLS 815

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           +   + I +   + S ++   S    +Q+ ++L
Sbjct: 816 KVDGKRILLEASTTSLMLSLFSRKGKYQEDIKL 848


>gi|298712189|emb|CBJ33061.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 531

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 175/398 (43%), Gaps = 10/398 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST---F 95
           G+ S  + LL +ME +G+      Y    +  C S+           L  + TL     +
Sbjct: 122 GQASTALRLLREMEERGIEATASNYKHALYACCDSKTGENWEAAAALLRRSETLRNNFFY 181

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV----FH 151
             ++  C  +   + A +VLR +   GL  D   Y T+I+    S  V A +++      
Sbjct: 182 GRVIMACRRAGQWQKALEVLREMSRVGLAPDIFCYDTVISVACMS-SVGAQWKIARDLLR 240

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           E    G+  ++ +Y  ++  C KAG+  +A      MR     PD + +N  I+AC +  
Sbjct: 241 EQAKTGVPCSLISYNLVLSACKKAGRPRQAVSLLRAMRGHGCSPDVISYNTAISACVKRR 300

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             + A  VL +M      ++P+  + G+++  CA  G+VD+A  ++  + +  +K     
Sbjct: 301 EWELALFVLRDMQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFDEMPEAGVKVDAFT 360

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y       ++ G W  A S   DM++ G + D V  +A I   G AG+ + A  +L+E +
Sbjct: 361 YNSVAMAYARDGRWRQAISTLSDMSELGHVGDVVSYTAAIRACGWAGECDRALSLLREMR 420

Query: 332 NQ-GISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVSTMNALITALCDGDQ 389
            + G+     ++++ + AC +   W++ LEL   M +S    P      + I A   G Q
Sbjct: 421 EEKGVKPNEKTFAAAISACGHGGRWERGLELLSEMPRSTGFLPDADCYTSAIKACGKGGQ 480

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             +   +L +  + G  P+  TY    V+     +V++
Sbjct: 481 WEQAFTLLREAAAEGTTPDAKTYEFHRVSSPSSPEVKL 518



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/488 (21%), Positives = 199/488 (40%), Gaps = 66/488 (13%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           + ++A+   +    L   P + + +  ++ C  +   +   ++L   +E G + +   Y 
Sbjct: 18  RWREALGLLYHIRALGITPNVKSVSAALNACGQAGQWQRCLELLGEAREWGTELNEVSYN 77

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           T I+ CA+  + +    +  +M + G+ P+  +YGA +  CA  GQ + A      M  +
Sbjct: 78  TAISACARRDRFEEALRLLRDMPSVGLVPDGWSYGATLGACAGTGQASTALRLLREMEER 137

Query: 192 NVKPDRVVFNALITAC--GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            ++     +   + AC   ++G    A   L   +  +     ++   G ++ AC  AGQ
Sbjct: 138 GIEATASNYKHALYACCDSKTGENWEAAAALLRRSETLR----NNFFYGRVIMACRRAGQ 193

Query: 250 VDRAREVYKMIHKYNIKGTPEVY----TIAINCCSQTG-DWEFACSVYDDMTKKGVIPDE 304
             +A EV + + +  +   P+++     I++ C S  G  W+ A  +  +  K GV    
Sbjct: 194 WQKALEVLREMSRVGL--APDIFCYDTVISVACMSSVGAQWKIARDLLREQAKTGVPCSL 251

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           +  + ++     AG+   A  +L+  +  G S  +ISY++ + AC   + W+ AL +   
Sbjct: 252 ISYNLVLSACKKAGRPRQAVSLLRAMRGHGCSPDVISYNTAISACVKRREWELALFVLRD 311

Query: 365 MK--SIKLKPTVSTMNALIT--ALCDG--------DQLP--------------------- 391
           M+    +L+P   +  ++IT  A C          D++P                     
Sbjct: 312 MQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFDEMPEAGVKVDAFTYNSVAMAYARD 371

Query: 392 ----KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVM 446
               + +  LSDM  LG   + ++Y+  + AC    + +  L LL + +E+ GV PN   
Sbjct: 372 GRWRQAISTLSDMSELGHVGDVVSYTAAIRACGWAGECDRALSLLREMREEKGVKPNEKT 431

Query: 447 FKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIE------------NKWTSLALMVYRE 492
           F   I  C    R+E+   L   +       P  +             +W   A  + RE
Sbjct: 432 FAAAISACGHGGRWERGLELLSEMPRSTGFLPDADCYTSAIKACGKGGQWEQ-AFTLLRE 490

Query: 493 AIVAGTIP 500
           A   GT P
Sbjct: 491 AAAEGTTP 498



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 62/139 (44%)

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
           H+ +   A  +L   +  GI+  + S S+ + AC  A  WQ+ LEL    +    +    
Sbjct: 15  HSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQWQRCLELLGEAREWGTELNEV 74

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           + N  I+A    D+  + + +L DM S+GL P+  +Y   L AC         L LL + 
Sbjct: 75  SYNTAISACARRDRFEEALRLLRDMPSVGLVPDGWSYGATLGACAGTGQASTALRLLREM 134

Query: 436 KEDGVIPNLVMFKCIIGMC 454
           +E G+      +K  +  C
Sbjct: 135 EERGIEATASNYKHALYAC 153



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 61/115 (53%)

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           SY + +   +++  W++AL L  H++++ + P V +++A + A     Q  + +E+L + 
Sbjct: 5   SYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQWQRCLELLGEA 64

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           +  G   N ++Y+  + AC R+D  E  L LL      G++P+   +   +G C+
Sbjct: 65  REWGTELNEVSYNTAISACARRDRFEEALRLLRDMPSVGLVPDGWSYGATLGACA 119


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 166/351 (47%), Gaps = 4/351 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-GKVDAM-FE 148
           T+  +N +M V A + + E   ++  L++E G + D   + TLI    KS   V  +  E
Sbjct: 263 TVQVYNAMMGVYARNGNFEKVNEMFNLMRERGCEPDIVSFNTLINAKVKSCATVSGLAIE 322

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  E+   G+ P++ TY  LI  C++   + +A G +  M S   +PD   +NA+I+  G
Sbjct: 323 LLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYG 382

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G   +A  +  ++ +  +   PD +T  +L+ A +  G  ++ R++ + + K      
Sbjct: 383 RCGFALKAEHLFEKLKS--NGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKD 440

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I+   + G  + A  +Y DM   G  PD V  + LID  G A K+E A +++ 
Sbjct: 441 EMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMS 500

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  + G+   + +YS+L+ A +      +A E +  M+   +K      + ++      +
Sbjct: 501 EMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFN 560

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           ++ K   +  +M   G  P+T  Y ++L A  R++  +V   ++   KE G
Sbjct: 561 EIKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQDTKELG 611



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 198/476 (41%), Gaps = 62/476 (13%)

Query: 31  SYNRLIRQGRISEC-------IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           S+N LI   ++  C       I+LL+++ + GL   D + +    + C  +  +KEA   
Sbjct: 301 SFNTLI-NAKVKSCATVSGLAIELLDEVGKFGLRP-DIITYNTLISACSRESNLKEAIGV 358

Query: 84  FKLVPN----PTLSTFNMLMSV---CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F  + +    P L T+N ++SV   C  +  +E  F+ L+     G   D   Y +L+  
Sbjct: 359 FSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLK---SNGFSPDAVTYNSLLYA 415

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
            +K G  + + ++  EMV  G   +  TY  +I    K G+  +A   Y  M+S    PD
Sbjct: 416 FSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPD 475

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRARE 255
            V +  LI   G++  ++ A  V++EM +A V P      T  AL+ A A  G+   A E
Sbjct: 476 AVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLH---TYSALICAYAKVGRRVEAEE 532

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALI 311
            +  + +  IK     Y++ ++   +  + + A ++Y +M + G  PD    EV L AL+
Sbjct: 533 TFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALV 592

Query: 312 DFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGAC------------SNAKNWQK- 357
               + G V     ++Q+ K  G ++   IS   + G C            SN     + 
Sbjct: 593 --RENMGDVIE--RVVQDTKELGSMNPHDISSVLVKGGCYDHGAKMLKVAISNGYELDRE 648

Query: 358 -----------------ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
                            A EL E  +            ALI  LC   +L   +E     
Sbjct: 649 IFLSIMSSYSSSARYSEACELVEFFREHAPDDIQMITEALIIILCKAGKLDAALEEYRSR 708

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             LG   +   Y  L+  C + +  ++   L S  + +GV P+  +++ ++ +  R
Sbjct: 709 GGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFNGVEPSECLYQSMVSVYCR 764



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 97/432 (22%), Positives = 171/432 (39%), Gaps = 66/432 (15%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           L  +     + ++  T+++   K+ +     E+F +   + I   V  Y A++   A+ G
Sbjct: 220 LTMQQWYATNARMVATILSVLGKANQEGIAVEIFAK-AESVIADTVQVYNAMMGVYARNG 278

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
              K    + +MR +  +PD V FN LI                   NA+V         
Sbjct: 279 NFEKVNEMFNLMRERGCEPDIVSFNTLI-------------------NAKV--------- 310

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
                K+CA    +  A E+   + K+ ++     Y   I+ CS+  + + A  V+  M 
Sbjct: 311 -----KSCATVSGL--AIELLDEVGKFGLRPDIITYNTLISACSRESNLKEAIGVFSHME 363

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
                PD    +A+I   G  G    A  + ++ K+ G S   ++Y+SL+ A S   N +
Sbjct: 364 SNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTE 423

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           K  ++ E M  +       T N +I       +  + + +  DMKS G  P+ +TY++L+
Sbjct: 424 KVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLI 483

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFK---CIIGMCSRRYEKARTLN-------- 465
               +   +E    ++S+  + GV P L  +    C      RR E   T N        
Sbjct: 484 DLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIK 543

Query: 466 -EHV---------LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLP 515
            +H+         L FN  +          A  +Y+E I AG  P   +   +L  L   
Sbjct: 544 ADHLAYSVMLDFFLRFNEIKK---------AAALYQEMIEAGFTPDTGLYEVMLPALVRE 594

Query: 516 YNADIRERLVEN 527
              D+ ER+V++
Sbjct: 595 NMGDVIERVVQD 606



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 153/369 (41%), Gaps = 39/369 (10%)

Query: 88   PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P+PT+ + N L+            + V++ +Q+  LK        ++   A++G +  + 
Sbjct: 855  PSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQ 914

Query: 148  EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM-RSKNVKPDRVVFNALITA 206
            +V++ M  AG  P +H Y  +I                G++ R K V+  RV    +++ 
Sbjct: 915  KVYNGMKAAGYFPTMHLYRLMI----------------GLLCRFKRVRDVRV----MLSE 954

Query: 207  CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             G++G                    PD     +++K  ++  +      +Y+MI    + 
Sbjct: 955  MGEAG------------------FKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLA 996

Query: 267  GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
               E Y   I    +    E   S+   M   G+ P      ++I         + A E+
Sbjct: 997  PDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEEL 1056

Query: 327  LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             +E ++ G  +    Y  +M     + + QKA  L E MK   ++P  +TM+ L+ +   
Sbjct: 1057 FEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGK 1116

Query: 387  GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              Q  +   +L +++++G   +T+ YS ++ A  +K D + G+  L++ KE  + P+  +
Sbjct: 1117 SGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRI 1176

Query: 447  FKCIIGMCS 455
            + C I   S
Sbjct: 1177 WTCFIRAAS 1185



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 113/250 (45%), Gaps = 2/250 (0%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P L  FN ++ + +S ++ +    + +++Q+AGL  D + Y TLIT   +  + +    +
Sbjct: 962  PDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSL 1021

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             H+M + G+EP   TY ++I   +K     +A   +  +RS   K DR  ++ ++     
Sbjct: 1022 MHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRT 1081

Query: 210  SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            SG   +A ++L  M      ++P+  T+  LM +   +GQ + A  + K +         
Sbjct: 1082 SGDHQKAENLLEIMKEA--GIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDT 1139

Query: 270  EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
              Y+  I+   + GD +       +M +  + PD    +  I  A  +G+V  A  +L  
Sbjct: 1140 LPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNA 1199

Query: 330  AKNQGISVGI 339
             +  G  + I
Sbjct: 1200 LQAVGFDLPI 1209



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 105/517 (20%), Positives = 204/517 (39%), Gaps = 72/517 (13%)

Query: 133  LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
            LI    K+GK+DA  E +      G   +   Y +LI  C K+ Q   A   +  MR   
Sbjct: 688  LIIILCKAGKLDAALEEYRSRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFNG 747

Query: 193  VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL--MKACANAGQV 250
            V+P   ++ ++++   + G  + A  +L   +AE + +  D++T+  +  ++        
Sbjct: 748  VEPSECLYQSMVSVYCRIGFPETAQHLL--YHAEKNDIILDNVTVHIIDIIETYGKLKMW 805

Query: 251  DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
              A  + + + +   K   +V+   I+  + +G +E A ++++ M ++G  P    ++ L
Sbjct: 806  QSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNGL 865

Query: 311  IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
            +      G++   + ++QE ++  + +   S   ++ A + A N  +  ++Y  MK+   
Sbjct: 866  LQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGY 925

Query: 371  KPTVSTMNALITALCDGDQLPKTMEVLSDM------------------------------ 400
             PT+     +I  LC   ++     +LS+M                              
Sbjct: 926  FPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGV 985

Query: 401  -----KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
                 +  GL P+  TY+ L+    R    E GL L+ + K  G+ P    ++ +I   S
Sbjct: 986  IYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFS 1045

Query: 456  RR--YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR----------------EAIVAG 497
            ++  Y++A  L E +    S   +++  +  L + +YR                EA +  
Sbjct: 1046 KQQLYDQAEELFEEL---RSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEP 1102

Query: 498  TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSL 557
               T+ ++    G    P  AD   R+++NL      L      S+ID +         L
Sbjct: 1103 NTATMHLLMVSYGKSGQPEEAD---RILKNLRTMGAVLDTLPYSSVIDAY---------L 1150

Query: 558  LEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVSLS 594
             +  A  GI      KE  +  D R         SLS
Sbjct: 1151 KKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLS 1187



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/288 (18%), Positives = 124/288 (43%), Gaps = 2/288 (0%)

Query: 118  VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
            ++ AG      LY  +I    +  +V  +  +  EM  AG +P++  + +++   +   +
Sbjct: 920  MKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEE 979

Query: 178  VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
                   Y +++   + PD   +N LIT   +    +    ++ +M +    ++P   T 
Sbjct: 980  FQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKS--LGLEPKRDTY 1037

Query: 238  GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             +++ A +     D+A E+++ +     K     Y + +     +GD + A ++ + M +
Sbjct: 1038 RSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKE 1097

Query: 298  KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
             G+ P+   +  L+   G +G+ E A  IL+  +  G  +  + YSS++ A     + + 
Sbjct: 1098 AGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKA 1157

Query: 358  ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
             +E    MK   ++P        I A     ++     +L+ ++++G 
Sbjct: 1158 GIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQAVGF 1205


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 186/412 (45%), Gaps = 19/412 (4%)

Query: 68  FNVCKSQKAIKEAFRFFK-----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           F V K     K  F+F +     L  N   ST+N+LM         +    V   +   G
Sbjct: 44  FEVIKRFNNPKVGFKFLEFSRLNLNVNHCYSTYNLLMRSLCQMGHHDLVNIVFDYMGSDG 103

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA- 181
              D KL   L+T  A++   D + ++  E+    +  N   Y  L+    K  QV +A 
Sbjct: 104 HLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAI 163

Query: 182 --FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
             F  Y +M+S    PD   FN LI    + G VDRAF+V  +M  E     PD +T   
Sbjct: 164 YLFKEYLVMQSP---PDTWTFNILIRGLCRVGGVDRAFEVFKDM--ESFGCLPDVVTYNT 218

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTK 297
           L+     A +V R  E++K I   +   +P++  YT  I+   ++G  + A +++++M +
Sbjct: 219 LINGLCKANEVQRGCELFKEIQSRS-DCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMR 277

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G+ P+ +  + LID  G  G +  A  + ++      S  +++++SL+     A     
Sbjct: 278 SGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNH 337

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
            L+ +  MK+  + PTV T   LI ALC  ++L +  + L  +K+  + P    Y+ ++ 
Sbjct: 338 GLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVID 397

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMC--SRRYEKARTLNE 466
              +  +V+ G ++L + +E    P+ V F   IIG C   R +E     N 
Sbjct: 398 GFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNR 449



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 127/302 (42%), Gaps = 47/302 (15%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R G +    ++ +DME  G L                                P + T
Sbjct: 188 LCRVGGVDRAFEVFKDMESFGCL--------------------------------PDVVT 215

Query: 95  FNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEV 149
           +N L++ +C +++   G      L +E   ++DC      YT++I+   KSGK+     +
Sbjct: 216 YNTLINGLCKANEVQRGC----ELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNL 271

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM+ +GI+PNV T+  LIDG  K G +A+A   Y  M   +   D V F +LI    +
Sbjct: 272 FEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCR 331

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G V+        M  +   V P   T   L+ A     +++ AR+    I   +I   P
Sbjct: 332 AGQVNHGLKFWNVM--KTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKP 389

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAFEIL 327
            +Y   I+   + G+ +    +  +M +K   PD+V  + LI   GH   G++  A  I 
Sbjct: 390 FMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILI--IGHCVKGRMFEAINIF 447

Query: 328 QE 329
             
Sbjct: 448 NR 449



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 15/246 (6%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH------ARFFNVCKS 73
           D S  + +Y  +I    + G++ E  +L E+M R G+      ++       +  N+ ++
Sbjct: 244 DCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEA 303

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + A+     +F    +  + TF  L+     +       +   +++   +      Y  L
Sbjct: 304 E-AMYRKMAYFDCSAD--VVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVL 360

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    K  +++   +   ++ N+ I P    Y  +IDG  KAG V +       M  K  
Sbjct: 361 INALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRC 420

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            PD+V F  LI      G +  A ++   M A      PD+IT+ +L+     AG  + A
Sbjct: 421 DPDKVTFTILIIGHCVKGRMFEAINIFNRMLAT--RCAPDNITVNSLISCLLKAGMPNEA 478

Query: 254 REVYKM 259
             + KM
Sbjct: 479 YRIRKM 484


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 199/434 (45%), Gaps = 8/434 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           NR  + G+ +E +  LE +  KG    D +   +      + K I++A R  +++ +   
Sbjct: 76  NRSCKAGKFNESLYFLECLVNKGYTP-DVILCTKLIKGFFNFKNIEKASRVMEILESHTE 134

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +N ++S        E A QVL  ++  G   D   Y  +I +     K+    +V
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +++     P V TY  LI+     G + +A      M ++ + PD   +NA+I    +
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 254

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V+RA +++  + ++     PD I+   L++A  N G+ D   ++   +     +   
Sbjct: 255 EGMVERAAELITSLTSK--GCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 312

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+I I+   + G  + A SV   M +K + PD      LI      G+++ A  I+  
Sbjct: 313 VTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDY 372

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             + G    I++Y++++ A     N  +ALE++  ++ +   P VS+ N +I+AL     
Sbjct: 373 MISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGD 432

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             + + ++  M S G+ P+ ITY+ L+    R   VE  + LL   ++ G  P ++ +  
Sbjct: 433 RSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNI 492

Query: 450 I-IGMCS-RRYEKA 461
           + +G+C  RR + A
Sbjct: 493 VLLGLCKVRRIDDA 506



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 170/365 (46%), Gaps = 8/365 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N+++    + +    A +VL  +           YT LI      G ++   ++
Sbjct: 170 PDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKL 229

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM+  G+ P+++TY A+I G  K G V +A      + SK  KPD + +N L+ A   
Sbjct: 230 LEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLN 289

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGT 268
            G  D    ++AEM +     +P+ +T   L+ +    G++D A  V K MI K   + T
Sbjct: 290 QGKWDEGEKLVAEMFS--RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEK---ELT 344

Query: 269 PEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+ Y+    I+   + G  + A  + D M   G +PD V  + ++      G    A EI
Sbjct: 345 PDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEI 404

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
             + +  G    + SY++++ A  +  +  +AL +   M S  + P   T N+LI+ LC 
Sbjct: 405 FNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCR 464

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              + + + +L DM+  G  P  I+Y+I+L+   +   ++  + + ++  E G  PN   
Sbjct: 465 DGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETT 524

Query: 447 FKCII 451
           +  +I
Sbjct: 525 YILLI 529



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 146/320 (45%), Gaps = 3/320 (0%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+    K+GK +        +VN G  P+V     LI G      + KA     I+ S +
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILES-H 132

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
            +PD   +NA+I+   +   ++ A  VL  M A      PD +T   ++ +  N  ++  
Sbjct: 133 TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKA--RGFLPDIVTYNIMIGSLCNRRKLGL 190

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A +V   +   N   T   YTI I      G    A  + ++M  +G++PD    +A+I 
Sbjct: 191 ALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIR 250

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G VE A E++    ++G    +ISY+ L+ A  N   W +  +L   M S   +P
Sbjct: 251 GMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEP 310

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T + LI++LC   ++ + + VL  M    L P+T +Y  L+ A  ++  +++ + ++
Sbjct: 311 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 370

Query: 433 SQAKEDGVIPNLVMFKCIIG 452
                +G +P++V +  I+ 
Sbjct: 371 DYMISNGCLPDIVNYNTILA 390



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 148/367 (40%), Gaps = 34/367 (9%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           I +G I+E + LLE+M  +GLL                                P + T+
Sbjct: 218 IVEGGINEAMKLLEEMLARGLL--------------------------------PDMYTY 245

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N ++         E A +++  +   G K D   Y  L+      GK D   ++  EM +
Sbjct: 246 NAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFS 305

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G EPN  TY  LI    + G++ +A     +M  K + PD   ++ LI+A  + G +D 
Sbjct: 306 RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDL 365

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  ++  M +  +   PD +    ++ A    G  ++A E++  +           Y   
Sbjct: 366 AIGIMDYMIS--NGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTM 423

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+     GD   A  +   M  KGV PDE+  ++LI      G VE A  +L + +  G 
Sbjct: 424 ISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGF 483

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              +ISY+ ++      +    A+ ++  M     +P  +T   LI  +       + ME
Sbjct: 484 RPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAME 543

Query: 396 VLSDMKS 402
           + + + S
Sbjct: 544 LANSLFS 550



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 177/406 (43%), Gaps = 10/406 (2%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           +L   C + K +E  + +  LV + G   D  L T LI        ++    V  E++ +
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNK-GYTPDVILCTKLIKGFFNFKNIEKASRVM-EILES 131

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
             EP+V  Y A+I G  K  ++  A      M+++   PD V +N +I +      +  A
Sbjct: 132 HTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLA 191

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEVYTI- 274
             VL ++   +    P  IT   L++A    G ++   E  K++ +   +G  P++YT  
Sbjct: 192 LKVLDQL--LLDNCMPTVITYTILIEATIVEGGIN---EAMKLLEEMLARGLLPDMYTYN 246

Query: 275 -AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I    + G  E A  +   +T KG  PD +  + L+    + GK +   +++ E  ++
Sbjct: 247 AIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSR 306

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G     ++YS L+ +        +A+ + + M   +L P   + + LI+ALC   +L   
Sbjct: 307 GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 366

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           + ++  M S G  P+ + Y+ +L A  +  +    L + ++ +  G  PN+  +  +I  
Sbjct: 367 IGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISA 426

Query: 454 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 499
                +++R L       + G    E  + SL   + R+ +V   I
Sbjct: 427 LWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAI 472



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 77/148 (52%), Gaps = 1/148 (0%)

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
           E  L  L++ +  AGK   +   L+   N+G +  +I  + L+    N KN +KA  + E
Sbjct: 68  ETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVME 127

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            ++S   +P V   NA+I+  C  +++    +VL+ MK+ G  P+ +TY+I++ +   + 
Sbjct: 128 ILES-HTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 186

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            + + L +L Q   D  +P ++ +  +I
Sbjct: 187 KLGLALKVLDQLLLDNCMPTVITYTILI 214



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 44/213 (20%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +++   +SY+ LI    ++GR+   I +++ M   G L     Y+     +CK+  A + 
Sbjct: 342 ELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQA 401

Query: 80  AFRFFKL----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
              F KL     P P +S++N ++S   S  D   A  ++  +   G+  D   Y +LI+
Sbjct: 402 LEIFNKLRGMGCP-PNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLIS 460

Query: 136 TCAKSG-----------------------------------KVDAMFEVFHEMVNAGIEP 160
              + G                                   ++D    +F EM+  G  P
Sbjct: 461 CLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRP 520

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           N  TY  LI+G   AG   +A      + S++V
Sbjct: 521 NETTYILLIEGIGFAGWRTEAMELANSLFSRDV 553


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 185/443 (41%), Gaps = 47/443 (10%)

Query: 14  PNGKHANYA-HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           PNG + + +  + +  +H   +L+R G + E +  LE M  +G +       +     C+
Sbjct: 96  PNGVNGSRSFEEFASNIH-LRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCR 154

Query: 73  SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           S K  ++A R  +++ N    P + T+N+L+     S + + A QVL   +   +  D  
Sbjct: 155 SGKT-RKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVL---ERMSVAPDVV 210

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            Y T++ +   SGK+    EV    +     P+V TY  LI+       V +A      M
Sbjct: 211 TYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEM 270

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           R K  KPD V +N LI    + G +D A   L  M   ++   P+ IT            
Sbjct: 271 RKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM--PLYGCQPNVIT------------ 316

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
                                  + I +     TG W  A  +  DM +KG  P  V  +
Sbjct: 317 -----------------------HNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFN 353

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            LI+F      +  A ++L++    G     +SY+ L+      K   +A+E  E M S 
Sbjct: 354 ILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSR 413

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
              P + T N L+TALC   +    +E+L+ + S G  P  ITY+ ++    +    E  
Sbjct: 414 GCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYA 473

Query: 429 LMLLSQAKEDGVIPNLVMFKCII 451
             LL + +  G+ P+++ +  ++
Sbjct: 474 AELLEEMRRKGLKPDIITYSTLL 496



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 178/395 (45%), Gaps = 16/395 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAF---- 81
           +YN LI    + G I + + +LE M     +  D V Y+    ++C S K +KEA     
Sbjct: 179 TYNVLIGGYCKSGEIDKALQVLERMS----VAPDVVTYNTILRSLCDSGK-LKEAMEVLD 233

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R  +    P + T+ +L+    +      A ++L  +++ G K D   Y  LI    K G
Sbjct: 234 RQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEG 293

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++D   +  + M   G +PNV T+  ++      G+   A      M  K   P  V FN
Sbjct: 294 RLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFN 353

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    +   + RA DVL +M    H   P+ ++   L+       ++DRA E  +++ 
Sbjct: 354 ILINFLCRKRLLGRAIDVLEKMPK--HGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 411

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                     Y   +    + G  + A  + + ++ KG  P  +  + +ID     GK E
Sbjct: 412 SRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTE 471

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E+L+E + +G+   II+YS+L+          +A++++  M+ + +KP+  T NA++
Sbjct: 472 YAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIM 531

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
             LC   Q  + ++ L+ M   G  P   TY+IL+
Sbjct: 532 LGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILI 566


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 186/417 (44%), Gaps = 11/417 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +  R+ E   LLE M   G       Y      +CK Q  + +A+  F+L+      P
Sbjct: 277 LCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCK-QGQVDDAYELFQLMERRNCPP 335

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T N+L+     +K  E A Q+   ++E G   D   Y +LI    KS +VD  F++F
Sbjct: 336 NVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLF 395

Query: 151 HEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +  +G+   N  TY  L  G A  G++A A   + ++  K   PD   + +LI    +
Sbjct: 396 QTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCK 455

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +       +++ EM ++  P  P   T+ A++         +RA +++  +         
Sbjct: 456 TSRAVEVVELVEEMASKGFP--PRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDA 513

Query: 270 EVYTIAINCCSQTGDWEFACSVYD---DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            +Y + +   ++    + A +V +   D   +   P    + AL++     GK + A ++
Sbjct: 514 LIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQL 573

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L +   +G +  + SY+ L+   S  + W +A +++E M S    P +ST+N +I+ LC 
Sbjct: 574 LHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCS 633

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
             ++    E++  M  LG CP+  T + L+    +    ++   LL +  E G+ PN
Sbjct: 634 AAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPN 690



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 130/562 (23%), Positives = 238/562 (42%), Gaps = 71/562 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + G   +   +LED+ ++G+ + D  +      +C    +++ A +   +V      P
Sbjct: 171 LCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTP 230

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+  FN++++    +KD + A+++L ++ E G   +   +T LIT   K+ +V    ++ 
Sbjct: 231 TVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLL 290

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +MV  G  PNV TY  +I+G  K GQV  A+  + +M  +N  P+ V  N LI    ++
Sbjct: 291 EKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKA 350

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             ++ A  +   M        PD IT  +L+     + QVD A ++++ I +  +     
Sbjct: 351 KRIEEARQLYHRMRET--GCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANA 408

Query: 271 V-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           V Y+   +  +  G    AC ++  +  KG  PD                          
Sbjct: 409 VTYSTLFHGYAALGRMADACRIFSMLVDKGFSPD-------------------------- 442

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                    + +Y+SL+          + +EL E M S    P V+T++A++  L +G+ 
Sbjct: 443 ---------LATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNH 493

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA--KED-------GV 440
             + +++   M + G   + + Y++++    R    +  L +L Q   K D         
Sbjct: 494 TERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSA 553

Query: 441 IPNLVMFKCIIGMCSRRYEKARTLNEH-----VLSFN---SGRPQIENKWTSLALMVYRE 492
           +  LV   C +G      +    ++E      V S+N   SG  +++ +W   A  V+  
Sbjct: 554 VDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQ-RWDE-ATQVFEA 611

Query: 493 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN---LGVSADALKRSNLCSLIDGF-- 547
            + AG  P +  V+ V+  L      D    LV+    LG   D ++  N  +LI G+  
Sbjct: 612 MVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPD-IETCN--TLIGGYCK 668

Query: 548 -GEYDPRAFSLLEEAASFGIVP 568
            G  D  A  LLEE    G+ P
Sbjct: 669 SGRAD-LARKLLEEMTEAGLEP 689



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 163/352 (46%), Gaps = 4/352 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+ +L+   +S+ D + A Q+L  ++ +G + +  ++TTL+     +G+V    E 
Sbjct: 55  PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEH 114

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M      P+V TY AL+    KAG+  +A G    M ++   PD V F+ LI    +
Sbjct: 115 FRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCK 173

Query: 210 SGAVDRAFDVLAE-MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G+ ++AF VL + +   +   D    TI  + + C     V+ A +V  ++       T
Sbjct: 174 FGSEEQAFRVLEDVIQRGMGNSDAAFETI--IQRLCNKYNSVELASKVLGVVIAKGFTPT 231

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             ++ + IN   +  D + A  + + M +KG +P+    + LI     A +V  A ++L+
Sbjct: 232 VLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLE 291

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +    G S  +++YS+++           A EL++ M+     P V T N LI  LC   
Sbjct: 292 KMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAK 351

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           ++ +  ++   M+  G  P+ ITY+ L+    +   V+    L     E GV
Sbjct: 352 RIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 403



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 156/352 (44%), Gaps = 7/352 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L +  RI E   L   M   G       Y++    +CKS + + EAF+ F+ +P   +S 
Sbjct: 347 LCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQ-VDEAFQLFQTIPESGVSA 405

Query: 94  ----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
               T++ L    A+      A ++  ++ + G   D   YT+LI    K+ +   + E+
Sbjct: 406 ANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVEL 465

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM + G  P V+T  A++ G  +     +A   +  M ++    D +++N ++    +
Sbjct: 466 VEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMAR 525

Query: 210 SGAVDRAFDVLAE-MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   D+A  VL + ++      +P    + AL+++    G+ D A+++   + +      
Sbjct: 526 ASKHDKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAA 585

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++  S+   W+ A  V++ M   G  P+   ++ +I +   A KV+ A+E++Q
Sbjct: 586 VSSYNRLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQ 645

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
                G    I + ++L+G    +     A +L E M    L+P  +T + L
Sbjct: 646 RMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 697



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 112/272 (41%), Gaps = 42/272 (15%)

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-----------MIHKYNIKG----- 267
           NA      P+  T G L++  ++AG +D A ++ +           ++H   +KG     
Sbjct: 47  NAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAG 106

Query: 268 ----------------TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
                            P+V  YT  ++   + G ++ A  +  +M  +G  PD V  S 
Sbjct: 107 RVVEALEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFST 166

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI- 368
           LID     G  E AF +L++   +G+     ++ +++    N  N   ++EL   +  + 
Sbjct: 167 LIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYN---SVELASKVLGVV 223

Query: 369 ---KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
                 PTV   N +I   C    L    ++L  M   G  PN  T++IL+    + + V
Sbjct: 224 IAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRV 283

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
                LL +    G  PN+V +  +I G+C +
Sbjct: 284 GEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQ 315



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 1/171 (0%)

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A +++ +   +  +P++     LI     AG ++ A ++L+E K+ G     + +++LM 
Sbjct: 41  ALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMK 100

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
              +A    +ALE +  M      P V T  AL+ ALC   +  +   +L +M + G  P
Sbjct: 101 GLCDAGRVVEALEHFRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAP 159

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 458
           +T+T+S L+    +    E    +L    + G+  +   F+ II     +Y
Sbjct: 160 DTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKY 210


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 196/435 (45%), Gaps = 18/435 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    + G ISE + + +DM  KG+       ++     CKS + I +A    + +
Sbjct: 364 YNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQ-IGQAENVLEEM 422

Query: 88  PNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
               L     +F+M+++          A   +R +    L+ +  L TTL++   K+GK 
Sbjct: 423 IGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQ 482

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
               E++  ++  G  PN+ T  ALI G  KAG + +       M  + +  DR+ +N L
Sbjct: 483 GEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTL 542

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I+ C + G V   F++  EM  +   + PD  T   L+    NA ++D A  ++   H+ 
Sbjct: 543 ISGCCKEGKVKEGFELKEEMVKK--GIQPDIYTFNLLLHGLCNADKIDEASRLW---HEC 597

Query: 264 NIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
              G  P VYT  + I+   +    E   ++ +++  K +  + V  ++LI      G +
Sbjct: 598 KKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNM 657

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            AAF +  + K++G+ +   +YSSLM    N      A  L + M+   L P V     +
Sbjct: 658 NAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTI 717

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I       Q+ K   VL +M S  + PN  TY+I++    +    +    LL++  E G+
Sbjct: 718 IGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGI 777

Query: 441 IPNLVMFKCII-GMC 454
           +P+ V +     G+C
Sbjct: 778 LPDAVTYNAFTNGLC 792



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 124/512 (24%), Positives = 214/512 (41%), Gaps = 57/512 (11%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A  V  L+ + GL    K  T L+++  K+ ++   +EV+  +   GI P+VH +  +I+
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
              K  +   A G +  M    V P+ V +N +I    +SG +D A+    +M  E   V
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKE--KV 322

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  IT    +       ++D A  V K + +        VY   I+   + G+   A  
Sbjct: 323 SPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALK 382

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---- 346
           + DDM  KG+ P+ V L++LI     + ++  A  +L+E   +G+ +   S+S ++    
Sbjct: 383 IRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLC 442

Query: 347 --------------------------------GACSNAKNWQKALELYEHMKSIKLKPTV 374
                                           G C   K  + A+EL+  +      P +
Sbjct: 443 LKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGE-AVELWCRLLGKGFVPNI 501

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T NALI  LC    + +T+++L DM   GL  + ITY+ L+  C ++  V+ G  L  +
Sbjct: 502 VTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEE 561

Query: 435 AKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492
             + G+ P++  F  ++ G+C + + ++A  L  H    N   P +      +       
Sbjct: 562 MVKKGIQPDIYTFNLLLHGLCNADKIDEASRL-WHECKKNGYVPNVYTYGVMIDGYCKAN 620

Query: 493 AIVAGTIPTVEVVSKVLGCLQLPYNADIRE-----------RLVENLGVSADALKRSNLC 541
            +  G     E+VSK L    + YN+ IR            RL +++      L  +   
Sbjct: 621 KVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYS 680

Query: 542 SLIDGF---GEYDPRAFSLLEEAASFGIVPCV 570
           SL+ G    G  D  A  LL+E    G++P V
Sbjct: 681 SLMHGLCNIGLVDD-AKHLLDEMRKEGLLPNV 711



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 169/368 (45%), Gaps = 4/368 (1%)

Query: 85  KLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           KL   P + T+N ++  +C S +  E      ++V+E  +      Y+  I    K  K+
Sbjct: 284 KLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEK-VSPSLITYSVFINGLIKLEKI 342

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D    V  EM   G  PN   Y  LIDG  K G +++A      M SK + P+ V  N+L
Sbjct: 343 DEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSL 402

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    +S  + +A +VL EM     P++    ++  +   C     V     + +M+ + 
Sbjct: 403 IQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSM-VINWLCLKFRFVTALHFIREMLLR- 460

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           N++    + T  ++   + G    A  ++  +  KG +P+ V  +ALI     AG ++  
Sbjct: 461 NLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQET 520

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            ++L++   +G+    I+Y++L+  C      ++  EL E M    ++P + T N L+  
Sbjct: 521 LKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHG 580

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC+ D++ +   +  + K  G  PN  TY +++    + + VE G  LL++     +  N
Sbjct: 581 LCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELN 640

Query: 444 LVMFKCII 451
            V++  +I
Sbjct: 641 SVVYNSLI 648



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/463 (22%), Positives = 198/463 (42%), Gaps = 42/463 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF----FKLVP 88
           N   +  R  + I L   ME+ G+      Y+     +CKS + + EA+RF     K   
Sbjct: 264 NAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGR-LDEAYRFKEKMVKEKV 322

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P+L T+++ ++     +  + A  VL+ + E G   +  +Y TLI    K G +    +
Sbjct: 323 SPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALK 382

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA---------------FGAYGI------ 187
           +  +M++ GI PN  T  +LI G  K+ Q+ +A                G++ +      
Sbjct: 383 IRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLC 442

Query: 188 --------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
                         M  +N++P+  +   L++   ++G    A ++   +  +     P+
Sbjct: 443 LKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGK--GFVPN 500

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +T  AL+     AG +    ++ + + +  +      Y   I+ C + G  +    + +
Sbjct: 501 IVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKE 560

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +M KKG+ PD    + L+    +A K++ A  +  E K  G    + +Y  ++     A 
Sbjct: 561 EMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKAN 620

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             ++   L   + S KL+      N+LI A C    +     +  DMKS G+  +  TYS
Sbjct: 621 KVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYS 680

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            L+        V+    LL + +++G++PN+V +  IIG  S+
Sbjct: 681 SLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSK 723



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 5/392 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L  + R    +  + +M  + L   D +       +CK+ K  +    + +L+     
Sbjct: 439 NWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFV 498

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T N L+     + + +   ++LR + E GL  D   Y TLI+ C K GKV   FE+
Sbjct: 499 PNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFEL 558

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EMV  GI+P+++T+  L+ G   A ++ +A   +   +     P+   +  +I    +
Sbjct: 559 KEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCK 618

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  V+   ++L E+ ++   ++ + +   +L++A    G ++ A  +   +    +  + 
Sbjct: 619 ANKVEEGENLLNELVSK--KLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSC 676

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  ++     G  + A  + D+M K+G++P+ V  + +I      G++     +LQE
Sbjct: 677 ATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQE 736

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             +  I     +Y+ ++         ++A +L   M    + P   T NA    LC   +
Sbjct: 737 MSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGK 796

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           + +  +V  +M S  +C + ITY+ L+  C +
Sbjct: 797 VEEAFKVCDEMSSGAVCLDEITYTTLIDGCHQ 828



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 1/171 (0%)

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
           + FA  V+  + KKG+ P     + L+     A +++ ++E+       GI   +  +S+
Sbjct: 202 FGFAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFST 261

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           ++ A         A+ L+  M+ + + P V T N +I  LC   +L +       M    
Sbjct: 262 MINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEK 321

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           + P+ ITYS+ +    + + ++    +L +  E G +PN V++  +I G C
Sbjct: 322 VSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYC 372


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 178/385 (46%), Gaps = 8/385 (2%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSGKVDAMFEV 149
           T++ F+++    A   D + A ++ + +Q     K +  +YT +I    + G +D   E+
Sbjct: 37  TINDFSLIFREFAQRSDWQKALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASEL 96

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M    +E NV+++ ALI+   + GQ   +      M+ + V P+ + +N +I AC +
Sbjct: 97  FEDMPLNDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAK 156

Query: 210 SG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G   +    + A+M  E   + PD IT   L+ AC++ G V+ A  V++ +++  +   
Sbjct: 157 GGLEWEGLLGLFAQMRHE--GIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPD 214

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++   Q    E    +  +M + G  PD V  + LI+  G AGK  AA ++ +
Sbjct: 215 SITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFK 274

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + +  G +  ++++S+L+ A      + +   L+  MK    +P V+T N LI     G 
Sbjct: 275 QMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGG 334

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              +++ +  D+   G+ P+  TY+ LL +C +    +    +     +  V P    F 
Sbjct: 335 FFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFT 394

Query: 449 CIIGMCSRRYEKARTLNEHVLSFNS 473
            +I      Y  A   +E   +FNS
Sbjct: 395 GLI----TAYGNAALYSEATYAFNS 415



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 192/463 (41%), Gaps = 18/463 (3%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           +DV   ++S+  LI    R G+    + LL  M+R+ +      Y+       K     +
Sbjct: 103 NDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWE 162

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
                F  + +    P + T+N L+S C+S    E A  V R + EAG+  D   Y  L+
Sbjct: 163 GLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALV 222

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               ++ + + + E+  EM  AG  P+V  Y  LI+   +AG+   A   +  M+     
Sbjct: 223 DIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCT 282

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V F+ L+ A G+ G  D    +  +M       +PD  T   L++     G    + 
Sbjct: 283 PDVVTFSTLLEAYGKHGCYDEVRLLFTDMKE--RGTEPDVNTYNTLIQVFGQGGFFQESI 340

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            ++  +    ++     Y   +  C + G  + A  ++  M +  V P     + LI   
Sbjct: 341 NLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAY 400

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
           G+A     A       K  G    + +Y++L+GA +    + +A   Y  M    +   V
Sbjct: 401 GNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADV 460

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERK--DDVEVGLML 431
           ST N+LI A   G      +E   DM+     PN  TY  L+ V C     D+ +   + 
Sbjct: 461 STYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEAKAQFLD 520

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472
           L    E   +P++  +  ++ +C+R  R++ A  + E +L  N
Sbjct: 521 LQVGGE---LPSVDSYCLLLSVCARRNRWDDASKVLEEMLEPN 560



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 130/331 (39%), Gaps = 36/331 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +ST+  L+  C      + A ++ R + ++ +      +T LIT    +         
Sbjct: 353 PDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYA 412

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+ M  +G +P++ TY ALI   A  G   +A  AY  M  + +  D   +N+LI A G+
Sbjct: 413 FNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGR 472

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  D A +   +M  E     P+  T  ALM     AG  D A+  +  +       + 
Sbjct: 473 GGLFDDAIEFSRDM--EEARCSPNRHTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSV 530

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           + Y + ++ C++   W+ A  V ++M +  +                             
Sbjct: 531 DSYCLLLSVCARRNRWDDASKVLEEMLEPNM----------------------------- 561

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+  GI     L G   +  NWQ+    ++ +K   +   +   NAL+ AL    Q
Sbjct: 562 PSIYGVVGGI-----LKGEMDDGTNWQRVEYAFDGLKVDGVGSNLRFYNALLEALWCLGQ 616

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
             +   V ++ +  G+     + S L+ A +
Sbjct: 617 RERACRVFAEARKRGVLAEAFSRSDLMWAID 647


>gi|384248722|gb|EIE22205.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 506

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 161/352 (45%), Gaps = 35/352 (9%)

Query: 90  PTLSTFNMLMSVC-ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + TF+ L + C A     + A + L  ++ +G+K +  LYTTL+  C + G+ +    
Sbjct: 128 PDVWTFSALTAACQACGNRWKDALKFLDQMESSGIKGNVVLYTTLMNVCRRGGQPERAMA 187

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  M   G++ +V  Y   +  C+      +A+  + +MR   V+P+   +NAL+ AC 
Sbjct: 188 IFRTMETDGVQLDVVAYNQAMASCS----WEQAWSCFNVMRRAGVQPNTRSYNALLAACE 243

Query: 209 QSGAVDRAFDVLAEMNAEVHP----VDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
           + G  DRA +  A M  E       V+P  +T   L+ AC  AG+   A EV  ++    
Sbjct: 244 RDGEADRALEAFARMEREAAKTYGYVEPSAVTYNTLISACGKAGKYAEALEVAAVMR--- 300

Query: 265 IKG-TPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
            +G TP+ +TI   ++     G+W  A + + +    G  P+    +ALI   G  G+  
Sbjct: 301 TRGHTPDSFTICSLVSAAGGAGEWRSALATFQEFCAAGGRPNAAAYNALIRALGQGGQPA 360

Query: 322 AAFEILQEAKNQ---------GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
            A  +    +++                S+++ +GAC     W+  L LY+ M    L P
Sbjct: 361 RALAVFNGMRSELPPAPGRAPAPPPNARSWAAAIGACRACGRWRDVLRLYQDMCDSGLAP 420

Query: 373 TVSTMNALITALC-------DGDQLPKTME---VLSDMKSLGLCPNTITYSI 414
              T+ ++I+A C       + D + + ME   +L+DM  L L    + Y++
Sbjct: 421 DGHTLQSVISA-CERAGAWEEADAVFQRMEQAGLLADMDGLALATRRVLYAL 471



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 126/315 (40%), Gaps = 26/315 (8%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TF 95
           R  + +  L+ ME  G+   + V +    NVC+     + A   F+ +    +      +
Sbjct: 146 RWKDALKFLDQMESSGI-KGNVVLYTTLMNVCRRGGQPERAMAIFRTMETDGVQLDVVAY 204

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N  M+ C+     E A+    +++ AG++ + + Y  L+  C + G+ D   E F  M  
Sbjct: 205 NQAMASCSW----EQAWSCFNVMRRAGVQPNTRSYNALLAACERDGEADRALEAFARMER 260

Query: 156 AG------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
                   +EP+  TY  LI  C KAG+ A+A     +MR++   PD     +L++A G 
Sbjct: 261 EAAKTYGYVEPSAVTYNTLISACGKAGKYAEALEVAAVMRTRGHTPDSFTICSLVSAAGG 320

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK------- 262
           +G    A     E  A      P+     AL++A    GQ  RA  V+  +         
Sbjct: 321 AGEWRSALATFQEFCAAGG--RPNAAAYNALIRALGQGGQPARALAVFNGMRSELPPAPG 378

Query: 263 --YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                      +  AI  C   G W     +Y DM   G+ PD   L ++I     AG  
Sbjct: 379 RAPAPPPNARSWAAAIGACRACGRWRDVLRLYQDMCDSGLAPDGHTLQSVISACERAGAW 438

Query: 321 EAAFEILQEAKNQGI 335
           E A  + Q  +  G+
Sbjct: 439 EEADAVFQRMEQAGL 453



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 166/416 (39%), Gaps = 58/416 (13%)

Query: 60  DKVYHARFFNVCKSQK--AIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQ 113
           D+  + R  ++   Q   A+K A  FF  +      P +  FN  +     + D E   +
Sbjct: 58  DRFLYTRLLSMSARQPNGAVK-ALEFFDRMCAARIRPDVVAFNAAIGAAGKAGDWERVLR 116

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           +   +Q++G+K D   ++ L   C   G +     +   +M ++GI+ NV  Y  L++ C
Sbjct: 117 LYADMQQSGVKPDVWTFSALTAACQACGNRWKDALKFLDQMESSGIKGNVVLYTTLMNVC 176

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
            + GQ  +A   +  M +  V+ D V +N  + +C    A    F+V+         V P
Sbjct: 177 RRGGQPERAMAIFRTMETDGVQLDVVAYNQAMASCSWEQAWS-CFNVMRRAG-----VQP 230

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           +  +  AL+ AC   G+ DRA E +  + +   K                          
Sbjct: 231 NTRSYNALLAACERDGEADRALEAFARMEREAAK-------------------------- 264

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
              T   V P  V  + LI   G AGK   A E+    + +G +    +  SL+ A   A
Sbjct: 265 ---TYGYVEPSAVTYNTLISACGKAGKYAEALEVAAVMRTRGHTPDSFTICSLVSAAGGA 321

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS---------L 403
             W+ AL  ++   +   +P  +  NALI AL  G Q  + + V + M+S          
Sbjct: 322 GEWRSALATFQEFCAAGGRPNAAAYNALIRALGQGGQPARALAVFNGMRSELPPAPGRAP 381

Query: 404 GLCPNTITYSILLVACE---RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
              PN  +++  + AC    R  DV   L L     + G+ P+    + +I  C R
Sbjct: 382 APPPNARSWAAAIGACRACGRWRDV---LRLYQDMCDSGLAPDGHTLQSVISACER 434



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 120/283 (42%), Gaps = 20/283 (7%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           R G+    + +   ME  G+  +D V + +    C  ++A        +    P   ++N
Sbjct: 178 RGGQPERAMAIFRTMETDGV-QLDVVAYNQAMASCSWEQAWSCFNVMRRAGVQPNTRSYN 236

Query: 97  MLMSVCASSKDSEGAFQVL-RLVQEAG-----LKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L++ C    +++ A +   R+ +EA      ++     Y TLI+ C K+GK     EV 
Sbjct: 237 ALLAACERDGEADRALEAFARMEREAAKTYGYVEPSAVTYNTLISACGKAGKYAEALEVA 296

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M   G  P+  T  +L+     AG+   A   +    +   +P+   +NALI A GQ 
Sbjct: 297 AVMRTRGHTPDSFTICSLVSAAGGAGEWRSALATFQEFCAAGGRPNAAAYNALIRALGQG 356

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHI-------TIGALMKACANAGQVDRAREVYKMIHKY 263
           G   RA  V   M +E+ P             +  A + AC   G   R R+V ++    
Sbjct: 357 GQPARALAVFNGMRSELPPAPGRAPAPPPNARSWAAAIGACRACG---RWRDVLRLYQDM 413

Query: 264 NIKG-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPD 303
              G  P+ +T+   I+ C + G WE A +V+  M + G++ D
Sbjct: 414 CDSGLAPDGHTLQSVISACERAGAWEEADAVFQRMEQAGLLAD 456



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 307 LSALIDFAGHAGKVE---AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ-KALELY 362
           ++ L+ + GH G+ +   AAF+ L        +   + Y+ L+   +   N   KALE +
Sbjct: 25  ITRLLSWLGHEGRFDLALAAFDWLDSCPEYTTADRFL-YTRLLSMSARQPNGAVKALEFF 83

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER- 421
           + M + +++P V   NA I A        + + + +DM+  G+ P+  T+S L  AC+  
Sbjct: 84  DRMCAARIRPDVVAFNAAIGAAGKAGDWERVLRLYADMQQSGVKPDVWTFSALTAACQAC 143

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
            +  +  L  L Q +  G+  N+V++  ++ +C R  +  R +
Sbjct: 144 GNRWKDALKFLDQMESSGIKGNVVLYTTLMNVCRRGGQPERAM 186



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 5/178 (2%)

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A   +D M    + PD V  +A I  AG AG  E    +  + +  G+   + ++S+L  
Sbjct: 79  ALEFFDRMCAARIRPDVVAFNAAIGAAGKAGDWERVLRLYADMQQSGVKPDVWTFSALTA 138

Query: 348 ACSNAKN-WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
           AC    N W+ AL+  + M+S  +K  V     L+     G Q  + M +   M++ G+ 
Sbjct: 139 ACQACGNRWKDALKFLDQMESSGIKGNVVLYTTLMNVCRRGGQPERAMAIFRTMETDGVQ 198

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
            + + Y+  + +C      E      +  +  GV PN   +  ++  C R  E  R L
Sbjct: 199 LDVVAYNQAMASCS----WEQAWSCFNVMRRAGVQPNTRSYNALLAACERDGEADRAL 252



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/261 (19%), Positives = 87/261 (33%), Gaps = 55/261 (21%)

Query: 31  SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN- 89
           +YN+ +      +       M R G+    + Y+A     C+       A   F  +   
Sbjct: 203 AYNQAMASCSWEQAWSCFNVMRRAGVQPNTRSYNA-LLAACERDGEADRALEAFARMERE 261

Query: 90  ---------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P+  T+N L+S C  +     A +V  +++  G   D     +L++    +
Sbjct: 262 AAKTYGYVEPSAVTYNTLISACGKAGKYAEALEVAAVMRTRGHTPDSFTICSLVSAAGGA 321

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK--------- 191
           G+  +    F E   AG  PN   Y ALI    + GQ A+A   +  MRS+         
Sbjct: 322 GEWRSALATFQEFCAAGGRPNAAAYNALIRALGQGGQPARALAVFNGMRSELPPAPGRAP 381

Query: 192 -----------------------------------NVKPDRVVFNALITACGQSGAVDRA 216
                                               + PD     ++I+AC ++GA + A
Sbjct: 382 APPPNARSWAAAIGACRACGRWRDVLRLYQDMCDSGLAPDGHTLQSVISACERAGAWEEA 441

Query: 217 FDVLAEMNAEVHPVDPDHITI 237
             V   M       D D + +
Sbjct: 442 DAVFQRMEQAGLLADMDGLAL 462


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 168/363 (46%), Gaps = 4/363 (1%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P +  +N L+  +C   +  EG   + R+  + G   D   Y  LI    K+G+++   E
Sbjct: 381 PDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKE 440

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM   G+ PNV T   L+ G  + G+V+ A   +   + + +K D V + ALI A  
Sbjct: 441 LFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFC 500

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                ++A ++  EM        PD I    L+   + AG++  A  V   + K  I+  
Sbjct: 501 NVNNFEKAMELFNEMLK--SGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPD 558

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I    +T  +     +  +M + G+ PD +  + LI +A   G ++ A ++++
Sbjct: 559 TVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMR 618

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDG 387
           +    G+   + +Y +++ A     N  +A+E+++ MK+  K+ P     N LI +LC  
Sbjct: 619 KMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKN 678

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           +++   + ++ DMK  G+ PNT TY+ +      + D+E     + +  E    P+ +  
Sbjct: 679 NKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITM 738

Query: 448 KCI 450
           + +
Sbjct: 739 EIL 741



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 155/330 (46%), Gaps = 13/330 (3%)

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR-- 189
           +L+T  A+ G  + M E+  +MV   I+PNV T+G LI+   K  +V  A      M   
Sbjct: 310 SLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGG 369

Query: 190 ------SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
                 S +V+PD V++N LI    + G       ++  M ++     PD IT   L+  
Sbjct: 370 KESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQ-KGCAPDTITYNCLIDG 428

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVI 301
              AG++++ +E++  ++K  +   P V T+   +    +TG    A + + +  ++G+ 
Sbjct: 429 FCKAGEIEKGKELFDEMNKEGV--APNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMK 486

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
            D V  +ALI+   +    E A E+  E    G S   I Y +L+   S A     A  +
Sbjct: 487 GDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFV 546

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
              +K + ++P     N LI   C  ++  +  E+L +M+  GL P+TITY+ L+    +
Sbjct: 547 LAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASK 606

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             D++    ++ +  + GV+P +  +  +I
Sbjct: 607 NGDLKFAQKVMRKMIKAGVVPTVATYGAVI 636



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 156/362 (43%), Gaps = 11/362 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDME-RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           YN LI    + GR  E + L+E M  +KG       Y+      CK+ +  K    F ++
Sbjct: 386 YNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEM 445

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P + T N L+     +     A       Q  G+K D   YT LI         
Sbjct: 446 NKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNF 505

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +   E+F+EM+ +G  P+   Y  LI G ++AG++A A      ++   ++PD V +N L
Sbjct: 506 EKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTL 565

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    ++    R F++L EM  E   + PD IT   L+   +  G +  A++V + + K 
Sbjct: 566 IGGFCRTNKFHRVFEMLKEM--EEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKA 623

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIPDEVFLSALIDFAGHAGKVEA 322
            +  T   Y   IN     G+   A  ++ DM     V P+ V  + LI+      KV++
Sbjct: 624 GVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKS 683

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  ++++ K  G++    +Y+++     + K+ +K  E  + M      P   TM  L  
Sbjct: 684 AVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTE 743

Query: 383 AL 384
            L
Sbjct: 744 WL 745



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 120/291 (41%), Gaps = 72/291 (24%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIK------------EAF 81
           R GR+S  ++   + +R+G+      Y A    F NV   +KA++            +A 
Sbjct: 466 RTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAI 525

Query: 82  RFFKLVP-----------------------NPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            ++ L+                         P    +N L+     +      F++L+ +
Sbjct: 526 VYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEM 585

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           +EAGLK D   Y TLI   +K+G +    +V  +M+ AG+ P V TYGA+I+     G  
Sbjct: 586 EEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNG 645

Query: 179 AKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEM------------NA 225
            +A   +  M++ + V P+ V++N LI +  ++  V  A  ++ +M            NA
Sbjct: 646 NEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNA 705

Query: 226 EV---------------------HPVDPDHITIGALMKACANAGQVDRARE 255
                                  H  +PD+IT+  L +  +  G+++R ++
Sbjct: 706 IFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLKK 756



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 124/331 (37%), Gaps = 64/331 (19%)

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV+    ++  LI       K    +++  E    G  +   + +SL+   +   N+ + 
Sbjct: 265 GVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRM 324

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--------------- 403
            EL E M  + ++P V T   LI  +C   ++   +EVL  M                  
Sbjct: 325 NELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVV 384

Query: 404 -------GLC----------------------PNTITYSILLVACERKDDVEVGLMLLSQ 434
                  GLC                      P+TITY+ L+    +  ++E G  L  +
Sbjct: 385 IYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDE 444

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL--------- 485
             ++GV PN+V    ++G   R    +  +N  V +   G       +T+L         
Sbjct: 445 MNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNN 504

Query: 486 ---ALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRERLVE--NLGVSADALKRSN 539
              A+ ++ E + +G  P   V   ++ G  Q    AD    L E   LG+  D +  + 
Sbjct: 505 FEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYN- 563

Query: 540 LCSLIDGFGEYDP--RAFSLLEEAASFGIVP 568
             +LI GF   +   R F +L+E    G+ P
Sbjct: 564 --TLIGGFCRTNKFHRVFEMLKEMEEAGLKP 592



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 8/192 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFF 84
           YN LI    R  +     ++L++ME  GL      Y+       K+   + A K   +  
Sbjct: 562 YNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMI 621

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKV 143
           K    PT++T+  +++    + +   A ++ + ++ A  +  +  +Y  LI +  K+ KV
Sbjct: 622 KAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKV 681

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
            +   +  +M   G+ PN  TY A+  G      + K F     M      PD +    L
Sbjct: 682 KSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEIL 741

Query: 204 ITACGQSGAVDR 215
                  G ++R
Sbjct: 742 TEWLSAVGEIER 753


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 176/396 (44%), Gaps = 35/396 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P++ T+++LM      +D E    +LR ++  G+K +   YT  I    ++ + D  + +
Sbjct: 318 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRI 377

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M N G +P+V T+  LI     AG+++ A   +  M+  + KPDRV +  L+   G 
Sbjct: 378 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 437

Query: 210 SG--------------------------------AVDRAFDVLAEMNAEVHP--VDPDHI 235
           +G                                 V R F+ L EM  E+    + P+  
Sbjct: 438 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEAL-EMFDEMKQKGIVPEQY 496

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           +  +L+     A +   A E++K +  +  K     + + IN   ++G+   A   Y+ M
Sbjct: 497 SYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELM 556

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             KG++PD V  +A++     +G++  A  +  E K  G+S   I+Y+ ++  CS A  +
Sbjct: 557 KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKF 616

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +A++++  M      P V  +N+LI  L    +  +   +   +K + L P   TY+ L
Sbjct: 617 DEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTL 676

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L    R+  V+  + LL +       PNL+ +  I+
Sbjct: 677 LAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTIL 712



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 180/424 (42%), Gaps = 11/424 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH V   ++SY   IR      R  E   +L  ME +G    D + H     V      I
Sbjct: 348 AHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGC-KPDVITHTVLIQVLCDAGRI 406

Query: 78  KEA----FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A    ++  K    P   T+  L+     + DS+   ++   ++  G   +   YT +
Sbjct: 407 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 466

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    + G+V    E+F EM   GI P  ++Y +LI G  KA +   A   +  M     
Sbjct: 467 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 526

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KP+       I   G+SG   +A      M ++   + PD +   A++   A +G++  A
Sbjct: 527 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSK--GIVPDVVAGNAVLFGLAKSGRLGMA 584

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           + V+  +    +      YT+ I CCS+   ++ A  ++ DM +   +PD + +++LID 
Sbjct: 585 KRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDT 644

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+ + A+ I  + K   +     +Y++L+         ++ + L E M      P 
Sbjct: 645 LYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPN 704

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + T N ++  LC    +   +++L  M + G  P+  +Y+ ++    +++       +  
Sbjct: 705 LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFC 764

Query: 434 QAKE 437
           Q K+
Sbjct: 765 QMKK 768



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 192/466 (41%), Gaps = 59/466 (12%)

Query: 26  SEQLHSYNRLIRQGRISE----CIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEA 80
           +E L  +    R+ R+++    C  +LE M   G + DM     A  F+V + Q      
Sbjct: 196 AEALERFRSAARKPRVAQTTASCNYMLELMRGHGRVGDM-----AEVFDVMQRQ------ 244

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                 +    + TF  +            A   L +++EAG+  +   Y  L+    KS
Sbjct: 245 ------IVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKS 298

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G      EV+  M+  G+ P+V TY  L+    K   V         M +  VKP+   +
Sbjct: 299 GFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSY 358

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
              I   GQ+   D A+ +LA+M  E     PD IT   L++   +AG++  A++V+  +
Sbjct: 359 TICIRVLGQAKRFDEAYRILAKMENE--GCKPDVITHTVLIQVLCDAGRISDAKDVFWKM 416

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            K + K     Y   ++     GD +    +++ M   G   + V  +A+ID     G+V
Sbjct: 417 KKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRV 476

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH---------------- 364
             A E+  E K +GI     SY+SL+     A  +  ALEL++H                
Sbjct: 477 FEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLF 536

Query: 365 -------------------MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
                              MKS  + P V   NA++  L    +L     V  ++K++G+
Sbjct: 537 INYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGV 596

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            P+TITY++++  C +    +  + +     E+  +P+++    +I
Sbjct: 597 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLI 642



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 108/504 (21%), Positives = 205/504 (40%), Gaps = 27/504 (5%)

Query: 18   HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
            H+NY  +    L +YN ++    + G +++ +D+L  M  KG +     Y+   + + K 
Sbjct: 698  HSNYPPN----LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 753

Query: 74   QKAIKEAFRFF---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKL 129
            ++   EAF  F   K V  P  +T   ++         + A  +++    + G K D   
Sbjct: 754  ER-YNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSS 812

Query: 130  YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
              +L+    K   ++   E    + ++GI  +      LI    K  +  +A       +
Sbjct: 813  CHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFK 872

Query: 190  SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            S  V     ++N+LI        +D A  + AEM        PD  T   L+ A   + +
Sbjct: 873  SFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKE--LGCGPDEFTYNLLLDAMGKSMR 930

Query: 250  VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
            ++   +V + +H+   + T   Y   I+   ++   E A  +Y ++  +G  P       
Sbjct: 931  IEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGP 990

Query: 310  LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
            L+D    AG++E A  +  E    G       Y+ L+     A N +K   L++ M    
Sbjct: 991  LLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQG 1050

Query: 370  LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
            + P + +   +I  LC   QL   +     +  +GL P+ ITY++L+    +   +E  +
Sbjct: 1051 INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAV 1110

Query: 430  MLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE--------HVLSFNSG-RPQ 477
             L ++ ++ G++PNL  +  +I   G   +  E  +   E        +V ++N+  R  
Sbjct: 1111 SLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGY 1170

Query: 478  IENKWTSLALMVYREAIVAGTIPT 501
              +  T  A   Y   IV G +P 
Sbjct: 1171 SVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 120/564 (21%), Positives = 227/564 (40%), Gaps = 45/564 (7%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVPN---P 90
            L + GR+     +  +++  G+   D + +      C       EA + F+ ++ N   P
Sbjct: 575  LAKSGRLGMAKRVFHELKAMGV-SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 633

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
             +   N L+     +   + A+++   ++E  L+     Y TL+    + GKV  +  + 
Sbjct: 634  DVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 693

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             EM ++   PN+ TY  ++D   K G V  A      M +K   PD   +N +I    + 
Sbjct: 694  EEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 753

Query: 211  GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
               + AF +  +M      + PD+ T+  ++ +    G +   +E   +I  Y ++  P 
Sbjct: 754  ERYNEAFSIFCQMK---KVLIPDYATLCTILPSFVKIGLM---KEALHIIKDYFLQ--PG 805

Query: 271  VYTIAINCCS------QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
              T   +C S      +    E +    + +   G+  D+ FL  LI       K   A 
Sbjct: 806  SKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAH 865

Query: 325  EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            E++++ K+ G+S+    Y+SL+    +      A  L+  MK +   P   T N L+ A+
Sbjct: 866  ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 925

Query: 385  CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
                ++ + ++V  +M   G     +TY+ ++    +   +E  + L       G  P  
Sbjct: 926  GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 985

Query: 445  VMFKCIIG--MCSRRYEKARTLNEHVLSFN------------SGRPQIENKWTSLALMVY 490
              +  ++   + + R E A  L   +L +             +G     N  T     ++
Sbjct: 986  CTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGN--TEKVCHLF 1043

Query: 491  REAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDG 546
            ++ +  G  P ++  + ++  L    QL        +L+E +G+  D L   NL  LIDG
Sbjct: 1044 QDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLE-MGLEPD-LITYNL--LIDG 1099

Query: 547  FGEYD--PRAFSLLEEAASFGIVP 568
             G+      A SL  E    GIVP
Sbjct: 1100 LGKSKRLEEAVSLFNEMQKKGIVP 1123



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 135/334 (40%), Gaps = 2/334 (0%)

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+V  M EVF  M    ++ NV T+ A+  G    G +  A  A  +M+   +  +   +
Sbjct: 229 GRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTY 288

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N L+    +SG    A +V   M   V  V P   T   LM A      V+    + + +
Sbjct: 289 NGLVYFLVKSGFDREALEVYRVM--MVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 346

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             + +K     YTI I    Q   ++ A  +   M  +G  PD +  + LI     AG++
Sbjct: 347 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 406

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A ++  + K        ++Y +L+    +  + Q  +E++  MK+      V    A+
Sbjct: 407 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 466

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I ALC   ++ + +E+  +MK  G+ P   +Y+ L+    + D     L L       G 
Sbjct: 467 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 526

Query: 441 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
            PN       I    +  E  + +  + L  + G
Sbjct: 527 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG 560


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 146/310 (47%), Gaps = 4/310 (1%)

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
           G F  LR  ++ G + D   YTT++    ++ + D++ ++  +MV  G +PNV TY  LI
Sbjct: 362 GFFDWLR--RQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLI 419

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
                A  + +A   +  M+    +PDRV +  LI    ++G +D A  +   M      
Sbjct: 420 HCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEA--G 477

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           + PD  T   ++     AG +  A  ++  + ++        Y I I   ++  ++E A 
Sbjct: 478 LSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMAL 537

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            +Y DM   G  PD+V  S +++  GH G +E A  +  E + +        Y  L+   
Sbjct: 538 KLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLW 597

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
             A N +KA E Y+ M +  L P V T N+L++A     +LP    ++  M +LGL P+ 
Sbjct: 598 GKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSL 657

Query: 410 ITYSILLVAC 419
            TY++LL  C
Sbjct: 658 QTYTLLLSCC 667



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 135/332 (40%), Gaps = 46/332 (13%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+Y  ++    R  R      LLE M + G    + V + R  +       +KEA   F 
Sbjct: 378 HTYTTMVGILGRARRFDSISKLLEQMVKDGC-QPNVVTYNRLIHCYGCANYLKEALNVFN 436

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P   T+  L+ + A +   + A  + + +QEAGL  D   Y+ +I    K+G
Sbjct: 437 EMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAG 496

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            + A   +F EMV  G  PN+ TY  +I   AKA     A   Y  M++   +PD+V ++
Sbjct: 497 NLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYS 556

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            ++ A G  G ++ A  V  EM  +     PD    G L+     AG V++A E      
Sbjct: 557 IVMEALGHCGYLEEAESVFVEMQQK--NWVPDEPVYGLLVDLWGKAGNVEKASE------ 608

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                                  W      Y  M   G++P+    ++L+       ++ 
Sbjct: 609 -----------------------W------YQAMLNAGLLPNVPTCNSLLSAFLRLHRLP 639

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            A+ ++Q     G+   + +Y+ L+  C+ A+
Sbjct: 640 DAYNLVQSMVALGLRPSLQTYTLLLSCCTEAQ 671



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 123/281 (43%), Gaps = 19/281 (6%)

Query: 248 GQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
           G+  R   + K++ +    G  P V  Y   I+C       + A +V+++M + G  PD 
Sbjct: 388 GRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDR 447

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V    LID    AG ++ A  + +  +  G+S    +YS ++     A N   A  L+  
Sbjct: 448 VTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCE 507

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M      P + T N +I            +++  DM++ G  P+ +TYSI++ A      
Sbjct: 508 MVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGY 567

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG-RPQIE-- 479
           +E    +  + ++   +P+  ++  ++ +  +    EKA    + +L  N+G  P +   
Sbjct: 568 LEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAML--NAGLLPNVPTC 625

Query: 480 NKWTSLALMVYR--------EAIVA-GTIPTVEVVSKVLGC 511
           N   S  L ++R        +++VA G  P+++  + +L C
Sbjct: 626 NSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSC 666


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 180/421 (42%), Gaps = 64/421 (15%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   +F+ L+        +  A  V + +  AGL+AD  +  TLI    + G +     +
Sbjct: 45  PNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRL 104

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            H M       +V TY  L+D   KAG+ AKA   +  M+     PD VV+N LI+  G+
Sbjct: 105 LHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGK 164

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G VD A ++L +MN +   + PD  T   ++   ++ G+ ++A   + M+ +   K +P
Sbjct: 165 QGKVDEALELLEDMNRK--GIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRR--KHSP 220

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +V  Y   +N   +    + AC ++D+M     +PD      LID    AG++E A E  
Sbjct: 221 DVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALE-- 278

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           Q A+   + +G +                               P     NALI+  C  
Sbjct: 279 QSARL--VKMGHV-------------------------------PNSYIYNALISGFCRS 305

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            Q+ K  E+  DM      P++ITY+IL++   R+    + + LL +   +G  P L  +
Sbjct: 306 GQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATY 365

Query: 448 KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 507
             +I          R+L        S   Q+E+ +T     +++E I  G  P ++  S 
Sbjct: 366 NVLI----------RSL--------SMAGQVEDAYT-----LFKEMIAKGFNPDMQTYSA 402

Query: 508 V 508
           +
Sbjct: 403 L 403



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 12/240 (5%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    +QG++ E ++LLEDM RKG++   + Y+    +V  S    ++A+ FF ++
Sbjct: 155 YNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNI-VIDVLSSCGRYEKAYSFFGMM 213

Query: 88  P----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                +P + T+N L++     + ++ A  +   +Q      D   + TLI T AK+G++
Sbjct: 214 KRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRM 273

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +   E    +V  G  PN + Y ALI G  ++GQV K +  +  M   +  PD + +  L
Sbjct: 274 EDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTIL 333

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHK 262
           +    + G    A ++L EM  E H   P   T   L+++ + AGQV+ A  ++K MI K
Sbjct: 334 VLGFSRRGHTSMAMELLQEMVREGHT--PALATYNVLIRSLSMAGQVEDAYTLFKEMIAK 391


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 187/407 (45%), Gaps = 16/407 (3%)

Query: 75  KAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK------ 124
           K  +EA + F L+ +    PT ++FN+L++  +     E A ++   ++E+         
Sbjct: 97  KQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEKLFHEMKESNYSPGTVEW 156

Query: 125 ---ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
              +    Y T +    KSG++    + F +M   GI P V+T+  +I+   KA    KA
Sbjct: 157 MIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKA 216

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +  MR     P+   + AL+ A  + G   RA ++ AE+ +      PD  T  AL+
Sbjct: 217 DDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSV--GFIPDVYTYNALL 274

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
           +A +       A+EV++ + +  ++     Y I I+   + G    A +VYD M + G  
Sbjct: 275 EAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFK 334

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P       L+     AGKV  A  +++E +N G+      ++SL+ A  N+    +   L
Sbjct: 335 PTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESL 394

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            E M S   KP +ST+N LI A   G  + K  EV + ++S GL P+ ++++ L+ A  +
Sbjct: 395 LESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQ 454

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
           +      + +  +  + G IP+    K  +  C R  E+ + + + +
Sbjct: 455 RKLFRKCVSIFQKMVKAGCIPDRATAKVFLSSC-RSPEQVKEVTDMI 500



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 166/399 (41%), Gaps = 61/399 (15%)

Query: 17  KHANYAHDVSEQL-----HSYNRLI----RQGRISECIDLLEDMERKGLLD-------MD 60
           K +NY+    E +      +YN  +    + GR+S+  D   DM+++G+L        M 
Sbjct: 145 KESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMI 204

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFK--LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            +Y   ++    S KA  + FR  +  L P P L T+  LM+  A   +   A ++   +
Sbjct: 205 NIYGKAYY----SDKA-DDLFRSMRKALCP-PNLYTYTALMNAHAREGNCVRAEEIFAEL 258

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           Q  G   D   Y  L+   ++        EVF  MV AG+ P+  +Y  LID   +AG  
Sbjct: 259 QSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLT 318

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
           A A   Y  M+    KP       L+++  ++G V  A  ++ E+  E   V PD     
Sbjct: 319 ADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREI--ENSGVKPDTFMFN 376

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           +L+ A  N+G++D    + + +     K         IN  +Q G  E A  V++ +  K
Sbjct: 377 SLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESK 436

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD                                   ++S++SLMGA +  K ++K 
Sbjct: 437 GLTPD-----------------------------------VMSWTSLMGAYAQRKLFRKC 461

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
           + +++ M      P  +T    +++    +Q+ +  +++
Sbjct: 462 VSIFQKMVKAGCIPDRATAKVFLSSCRSPEQVKEVTDMI 500



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 161/398 (40%), Gaps = 42/398 (10%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGA---VDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
           I++    KPD   FN LI A G+S      ++ F ++ +         P   +   L+ A
Sbjct: 73  ILQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCL-----PTETSFNVLLAA 127

Query: 244 CANAGQVDRAREVYKMIHKYNIK-GTPE--------VYTIAINCCSQTGDWEFACSVYDD 294
            +   Q+++A +++  + + N   GT E         Y   +    ++G    A   + D
Sbjct: 128 YSRGVQLEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRD 187

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K+G++P     + +I+  G A   + A ++ +  +       + +Y++LM A +   N
Sbjct: 188 MQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGN 247

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             +A E++  ++S+   P V T NAL+ A   G+      EV   M   G+ P+ ++Y+I
Sbjct: 248 CVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNI 307

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
           L+ A  R         +    KE G  P +     ++      Y KA  + E        
Sbjct: 308 LIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLS----SYAKAGKVTE-------- 355

Query: 475 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 534
                      A  + RE   +G  P   + + +L         D  E L+E++  S   
Sbjct: 356 -----------AERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAK 404

Query: 535 LKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVPCV 570
              S L +LI+ +  G Y  +A  +     S G+ P V
Sbjct: 405 PDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDV 442



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 141/330 (42%), Gaps = 10/330 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
            +P+V  +  LID   K+ Q  +A   + +M+     P    FN L+ A  +   +++A 
Sbjct: 79  FKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAE 138

Query: 218 DVLAEMN-AEVHPVDPDHI------TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
            +  EM  +   P   + +      T    ++    +G++ +A + ++ + K  I     
Sbjct: 139 KLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVN 198

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            +TI IN   +    + A  ++  M K    P+    +AL++     G    A EI  E 
Sbjct: 199 TFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAEL 258

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           ++ G    + +Y++L+ A S  ++   A E+++ M    ++P   + N LI A       
Sbjct: 259 QSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLT 318

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                V   MK  G  P   ++ +LL +  +   V     L+ + +  GV P+  MF  +
Sbjct: 319 ADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSL 378

Query: 451 IGMC--SRRYEKARTLNEHVLSFNSGRPQI 478
           +     S R ++  +L E ++S +  +P I
Sbjct: 379 LSAYGNSGRIDEMESLLESMVS-SVAKPDI 407



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 18/231 (7%)

Query: 7   NMLQFPYPNGKHANYAHDVSEQLH---------SYNRLI----RQGRISECIDLLEDMER 53
           N L   Y  G+H   A +V + +          SYN LI    R G  ++   + + M+ 
Sbjct: 271 NALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKE 330

Query: 54  KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSE 109
            G     K +     +  K+ K + EA R  + + N    P    FN L+S   +S   +
Sbjct: 331 AGFKPTMKSHMLLLSSYAKAGK-VTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRID 389

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
               +L  +  +  K D     TLI   A+ G ++   EVF+ + + G+ P+V ++ +L+
Sbjct: 390 EMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLM 449

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
              A+     K    +  M      PDR      +++C     V    D++
Sbjct: 450 GAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLSSCRSPEQVKEVTDMI 500


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 211/498 (42%), Gaps = 52/498 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFK--LV 87
           N L  +GR+ E +D+LE+M +KG+      Y     ++C    S +A++   +  K   V
Sbjct: 280 NGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCV 339

Query: 88  PN---------------------------------PTLSTFNMLMSVCASSKDSEGAFQV 114
           PN                                 PT  T+N L++        E AF +
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
            + +   G     + Y  +I      G +     +F +M+ AG  PNV TY  LI G  K
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCK 459

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
            G +  A     IM+   +KPD   +  LI+   + G ++ A  +   M    H + P+H
Sbjct: 460 QGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMME--HGISPNH 517

Query: 235 ITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
           +T  A++    N  +VD A  ++ KM+   N+  + + Y + I+  S+T     A +   
Sbjct: 518 VTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSS-QTYNVMISGFSKTNSISEAENFCG 576

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 352
            M K+G++P+ +  ++ ID     G+   AF+I  E + +     + +YSSL+ G C   
Sbjct: 577 KMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEG 636

Query: 353 KNWQKAL-ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           +     +  L   +     +P V T   L+  LC   +  +  +++  M+  GL P+   
Sbjct: 637 RAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEI 696

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKARTLNEHVL 469
           Y  LL+   +   VE  L +       G   +L  +K +I  +C   + E+A+ + + +L
Sbjct: 697 YRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTML 756

Query: 470 S--FNSGRPQIENKWTSL 485
              +NS     E  WT L
Sbjct: 757 EKHWNSD----EVVWTVL 770



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 185/452 (40%), Gaps = 27/452 (5%)

Query: 7   NMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR 66
           ++L+F +   +   + HD+S  +   NRL+R  R+    D                 H R
Sbjct: 93  SVLRFFFWISRRKFFKHDMSCFVSMLNRLVRD-RLFAPAD-----------------HVR 134

Query: 67  FFNV--CKSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
              +  C+++  +K   +F   + +      TL +F  L+         + A  +   + 
Sbjct: 135 ILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKML 194

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
            +G++     + T+I    K G+V     +   +      PN  TY +LI G  +   + 
Sbjct: 195 NSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLD 254

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            AF  +  M      P+ V ++ LI      G ++ A D+L EM  +   ++P   T   
Sbjct: 255 LAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK--GIEPTVYTYTI 312

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
            + +  +AG    A E+   + K       + +T  I+  S+ G +E A  +Y  M   G
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG 372

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           ++P  V  +ALI+     G+ E AF I +   + G      +Y+ ++       + QKA+
Sbjct: 373 LVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAM 432

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            +++ M      P V T N LI   C    L   M +L  MK  GL P+  TY+ L+   
Sbjct: 433 VIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            R   +E    L     E G+ PN V +  II
Sbjct: 493 SRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/448 (21%), Positives = 188/448 (41%), Gaps = 20/448 (4%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVC 71
           N  +D    L S+  L+ Q    + +DL  DM         R  LL  + +      N+ 
Sbjct: 158 NSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTM-----INIL 212

Query: 72  KSQKAIKEA----FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
             +  ++EA       F+    P   T+  L+     + + + AF +   + + G   + 
Sbjct: 213 CKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNS 272

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
             Y+TLI      G+++   ++  EMV  GIEP V+TY   +     AG  ++A    G 
Sbjct: 273 VTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGK 332

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M+ +   P+   F ALI+   + G  + A  +  +M A+   + P  +T  AL+      
Sbjct: 333 MKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLAD--GLVPTTVTYNALINQLCVE 390

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G+ + A  ++K +  +    + + Y   I C    GD + A  ++D M K G  P+ +  
Sbjct: 391 GRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITY 450

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + LI      G +  A  +L+  K  G+     +Y+ L+   S     + A  L+  M  
Sbjct: 451 NTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMME 510

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             + P   T  A+I    +  ++   + +   M   G  P++ TY++++    + + +  
Sbjct: 511 HGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISE 570

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMC 454
                 +  + G++PN++ +   I G+C
Sbjct: 571 AENFCGKMVKQGLLPNVITYTSFIDGLC 598



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 154/367 (41%), Gaps = 2/367 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+L TFN ++++       + A  ++  +       +   YT+LI    ++  +D  F +
Sbjct: 200 PSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM 259

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  MV  G +PN  TY  LI+G    G++ +A      M  K ++P    +   + +   
Sbjct: 260 FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCD 319

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G    A ++L +M        P+  T  AL+   +  G+ + A  +Y  +    +  T 
Sbjct: 320 AGCSSEAVELLGKMKKR--GCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTT 377

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   IN     G +E A +++  M   G +P     + +I      G ++ A  I  +
Sbjct: 378 VTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDK 437

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G S  +I+Y++L+       N   A+ L E MK   LKP   T   LI+    G +
Sbjct: 438 MLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGK 497

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L     +   M   G+ PN +TY+ ++        V+  L L  +  E G +P+   +  
Sbjct: 498 LEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNV 557

Query: 450 IIGMCSR 456
           +I   S+
Sbjct: 558 MISGFSK 564



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 177/387 (45%), Gaps = 14/387 (3%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +TTL+    K   VD   +++ +M+N+GI P++ T+  +I+   K G+V +A      + 
Sbjct: 170 FTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIF 229

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
             +  P+   + +LI    ++  +D AF +   M  +    DP+ +T   L+    + G+
Sbjct: 230 RYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKD--GCDPNSVTYSTLINGLCSEGR 287

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           ++ A ++ + + +  I+ T   YTI +      G    A  +   M K+G +P+    +A
Sbjct: 288 LEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTA 347

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI      GK E A  +  +    G+    ++Y++L+        ++ A  +++ M S  
Sbjct: 348 LISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHG 407

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P+  T N +I   C    + K M +   M   G  PN ITY+ L+    ++ ++   +
Sbjct: 408 SLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAM 467

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL----NEHVLSFNS-GRPQIENKW 482
            LL   K +G+ P+   +  +I   SR  + E A +L     EH +S N      I + +
Sbjct: 468 RLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGY 527

Query: 483 TSL-----ALMVYREAIVAGTIPTVEV 504
            +L     AL ++ + + +G +P+ + 
Sbjct: 528 FNLAKVDDALALFWKMVESGNLPSSQT 554



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 179/413 (43%), Gaps = 15/413 (3%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRF 83
           +YN LI Q    GR      + + M   G L   + Y+      C     QKA+    + 
Sbjct: 379 TYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKM 438

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K   +P + T+N L+       +   A ++L +++  GLK D   YT LI+  ++ GK+
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +    +F+ M+  GI PN  TY A+IDG     +V  A   +  M      P    +N +
Sbjct: 499 EHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVM 558

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I+   ++ ++  A +   +M  +   + P+ IT  + +      G+   A +++  + K 
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQ--GLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKR 616

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYD---DMTKKGVIPDEVFLSALIDFAGHAGKV 320
           N       Y+  I    Q G  E A  +Y+    +T  G  P+    + L+      G+ 
Sbjct: 617 NYFPNLYTYSSLIYGLCQEGRAEDA-EMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRC 675

Query: 321 EAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
             A +++   + +G+      Y +L+ G C N K  + AL ++  M ++  +  +S   A
Sbjct: 676 YEADQLVVSMQKKGLQPSEEIYRALLIGECKNLK-VESALNIFYSMDTLGFQLHLSDYKA 734

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           LI ALC  + + +   +   M       + + +++LL    ++ + ++ L LL
Sbjct: 735 LICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLL 787



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 136/328 (41%), Gaps = 19/328 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRF 83
           +Y  LI    R G++     L   M   G+      Y A    +FN+ K   A+     F
Sbjct: 484 TYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALA---LF 540

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +K+V +   P+  T+N+++S  + +     A      + + GL  +   YT+ I    ++
Sbjct: 541 WKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRN 600

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKNVKPDRV 198
           G+    F++FHEM      PN++TY +LI G  + G+   A+ +     +     +P+  
Sbjct: 601 GRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVD 660

Query: 199 VFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
            +  L+   CG+    +    V++     + P   + I    L+  C N  +V+ A  ++
Sbjct: 661 TYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP--SEEIYRALLIGECKNL-KVESALNIF 717

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             +     +     Y   I    +    E A  ++  M +K    DEV  + L+D     
Sbjct: 718 YSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKE 777

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSL 345
           G+ +   ++L   +++  ++   +Y  L
Sbjct: 778 GETDLCLKLLHVMESRNCTLNFQTYVML 805



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 19/169 (11%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +Y  L++    +GR  E   L+  M++KGL   +++Y A     CK+ K ++ A   F  
Sbjct: 661 TYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLK-VESALNIFYS 719

Query: 85  --KLVPNPTLSTFNMLMSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
              L     LS +  L  +CA  K++  E A  + + + E    +D  ++T L+    K 
Sbjct: 720 MDTLGFQLHLSDYKAL--ICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKE 777

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGAL------IDGCAKAGQVAKAFG 183
           G+ D   ++ H M +     N  TY  L      +D   K  Q+++  G
Sbjct: 778 GETDLCLKLLHVMESRNCTLNFQTYVMLARELSALDCAIKIPQISQQLG 826


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 162/341 (47%), Gaps = 5/341 (1%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +++  + A+   Y+++I +  K  K +  ++V  EM+ AG  P+V  +  ++ G A++  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           + KA   Y  M     KPD V ++ LI    + G +D +  +L+EM   +    P     
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMV--MRGQTPSMQAY 118

Query: 238 GALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
            +L++A A A +VD A  ++ +MI   +       Y + +  C Q G  + A   +  M 
Sbjct: 119 SSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLC-QAGKVKDASERFKQMP 177

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           K G  P+    + L+     +G++E A  +  E K+   S  +++Y++L+ A   A+  +
Sbjct: 178 KHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVE 237

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +  +L+E M++    P V T + LI  LC   +L K +EV   M   G  PN  TY+ L+
Sbjct: 238 EGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLI 297

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
               R + V     L  +  +  + P+ V +  +I G C R
Sbjct: 298 SGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKR 338



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 169/385 (43%), Gaps = 38/385 (9%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP +  FN +M   A S + E A +V + + E+G K D   Y  LI   AK GK+D   +
Sbjct: 42  NPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLK 101

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EMV  G  P++  Y +L+   AKA +V  A   +  M      PDR++F  LI    
Sbjct: 102 ILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLC 161

Query: 209 QSGAV-----------------------------------DRAFDVLAEMNAEVHPVDPD 233
           Q+G V                                   ++A  + AEM +  H   PD
Sbjct: 162 QAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKS--HSCSPD 219

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +T   L+ A   A +V+   ++++ +           ++  I+   +TG+ E A  V+ 
Sbjct: 220 VVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFG 279

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M + G  P++   + LI     A KV  A E+ ++     I    ++Y+SL+       
Sbjct: 280 SMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRG 339

Query: 354 NWQKALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           +  +A +LY  M     L+PT+ T N LI   C   +L +  E++++M + GL  ++ TY
Sbjct: 340 SMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTY 399

Query: 413 SILLVACERKDDVEVGLMLLSQAKE 437
            IL+    R   ++  L +  Q +E
Sbjct: 400 RILIAGLSRATKLDEALEVYKQMRE 424



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 165/363 (45%), Gaps = 4/363 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ ++         E +++VL  +  AG   D   +  ++   A+S  ++   EV+  M
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           V +G +P+  +Y  LI G AK G++ ++      M  +   P    +++L+ A  ++  V
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A  +  EM    H   PD +    L+     AG+V  A E +K + K+  +    VY 
Sbjct: 132 DHASSLFDEMIRGGH--HPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYN 189

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           + ++    +G  E A +++ +M      PD V  + L+D    A +VE   ++ +  +  
Sbjct: 190 VLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAA 249

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G    +I++S+L+         +KALE++  M     KP   T   LI+ LC  +++ + 
Sbjct: 250 GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQA 309

Query: 394 MEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
            E+   M    + P+ + Y+ L+   C+R    E   +    +   G+ P +V F  +I 
Sbjct: 310 RELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLID 369

Query: 452 GMC 454
           G C
Sbjct: 370 GFC 372



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 171/416 (41%), Gaps = 45/416 (10%)

Query: 29  LHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + +Y+ L+R      R+     L ++M R G      +++     +C++ K +K+A   F
Sbjct: 115 MQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGK-VKDASERF 173

Query: 85  KLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           K +P     P +  +N+L+    SS   E A  +   ++      D   Y TL+    K+
Sbjct: 174 KQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKA 233

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            +V+   ++F  M  AG  PNV T+  LI G  + G++ KA   +G M     KP++  +
Sbjct: 234 RRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTY 293

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
             LI+   ++  V +A ++  +M     P  PD +   +L+      G +D A ++Y+ +
Sbjct: 294 TTLISGLCRAEKVIQARELFEKMTQACIP--PDAVAYNSLIAGYCKRGSMDEAEKLYREM 351

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                                                 G+ P  V  + LID     GK+
Sbjct: 352 S----------------------------------GGAGLQPTIVTFNTLIDGFCKLGKL 377

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A E++ E   +G++    +Y  L+   S A    +ALE+Y+ M+  K      +  + 
Sbjct: 378 GRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSF 437

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
           +  LC    + +   V    +  G  PN  T+ IL  +  +   VE    L+  AK
Sbjct: 438 VGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAK 493



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 154/322 (47%), Gaps = 12/322 (3%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M +  I  NV TY ++I    K  +  +++     M +    PD   FN ++    +S  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TP-- 269
           +++A +V   M    +   PD+++   L+   A  G++D   E  K++ +  ++G TP  
Sbjct: 61  MEKAREVYQHMVESGY--KPDNVSYHILIHGLAKIGKLD---ESLKILSEMVMRGQTPSM 115

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           + Y+  +   ++    + A S++D+M + G  PD +    LI     AGKV+ A E  ++
Sbjct: 116 QAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQ 175

Query: 330 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               G    +  Y+ L+ G CS+ +  ++A  L+  MKS    P V T N L+ A+C   
Sbjct: 176 MPKHGCQPNVPVYNVLLHGLCSSGQ-LEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKAR 234

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ +  ++   M++ G  PN IT+S L+    R  ++E  L +     E G  PN   + 
Sbjct: 235 RVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYT 294

Query: 449 CII-GMC-SRRYEKARTLNEHV 468
            +I G+C + +  +AR L E +
Sbjct: 295 TLISGLCRAEKVIQARELFEKM 316



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 148/324 (45%), Gaps = 14/324 (4%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-- 76
           H     +  YN L+      G++ +   L  +M+          Y+     VCK+++   
Sbjct: 179 HGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEE 238

Query: 77  ---IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
              + EA R    VPN  + TF+ L+     + + E A +V   + EAG K +   YTTL
Sbjct: 239 GCKLFEAMRAAGYVPN--VITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTL 296

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KN 192
           I+   ++ KV    E+F +M  A I P+   Y +LI G  K G + +A   Y  M     
Sbjct: 297 ISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAG 356

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           ++P  V FN LI    + G + RA +++AEM  +   +  D  T   L+   + A ++D 
Sbjct: 357 LQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK--GLAADSCTYRILIAGLSRATKLDE 414

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A EVYK + +      P      +    +TG+ + A +V++   K G +P+      L +
Sbjct: 415 ALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSE 474

Query: 313 FAGHAGKVEAAFEILQEAKNQGIS 336
                G+VE A ++++ AK + I+
Sbjct: 475 SLIKLGRVEDAQKLMEPAKARDIT 498


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 116/469 (24%), Positives = 211/469 (44%), Gaps = 35/469 (7%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           +  L S+N L+    +    S+   L   M   GL   D+       N   +   ++E F
Sbjct: 66  TPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGL-SSDRCTLNILLNCLCNVNRLREGF 124

Query: 82  RFFKLVP----NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             F  +     +P + T+N L+  +C   + SE     LR+ Q+ G   D   Y TLI  
Sbjct: 125 AAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRM-QKLGCTPDVVTYGTLIKG 183

Query: 137 CAKSGKVDAMFEVFHEMVN------AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
              +G ++   ++  EM+N         +PNV TY  ++DG  K G+  +A   +  M++
Sbjct: 184 LCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKT 243

Query: 191 KN----------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           +           ++PD V FN LI    + G V  A  +L  M      + PD +T  +L
Sbjct: 244 QGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIES--GIVPDLVTYNSL 301

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           ++     G ++ ARE++  +     +     Y + IN  S+T   E A  +Y++M   G 
Sbjct: 302 IEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGK 361

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKAL 359
            P+ +   +L+     AGKV+ A ++    K  GI+    +Y   + G C N   ++ A+
Sbjct: 362 RPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFE-AM 420

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           +L+  +KS   K  +  +N LI  LC   +L    E+   + + G  PN +TY+I++   
Sbjct: 421 KLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGF 480

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
            R+  V+   +L+ + + +G  P+++ +  ++    R + ++  L E V
Sbjct: 481 CREGQVDKANVLIQKMEANGCTPDIITYNTLM----RGFYESNKLEEVV 525



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 183/410 (44%), Gaps = 20/410 (4%)

Query: 65  ARFFNVCKSQKAI-KEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           A F   CK+       A  FF L+    P P+LS+FN L+S  A  K     F +   ++
Sbjct: 37  AFFLRHCKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMR 96

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
            +GL +D      L+       ++   F  F  ++  G  PN+ TY  LI G     +++
Sbjct: 97  LSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRIS 156

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----PDHI 235
           +A   +  M+     PD V +  LI     +G ++ A  +  EM  ++   +    P+ I
Sbjct: 157 EATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVI 216

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNI-------KG-TPEVYT--IAINCCSQTGDW 285
           T   ++      G+ D A+++++ +    +       +G  P++ T  + I+   + G  
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKV 276

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
             A  +   M + G++PD V  ++LI+     G + +A E+     ++G    +ISY+ L
Sbjct: 277 IEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVL 336

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +   S     ++A++LY  M  +  +P V T ++L+  +    ++    ++ S MK+ G+
Sbjct: 337 INGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGI 396

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
             N+ TY I L    + D +   + L ++ K       +    C+I G+C
Sbjct: 397 AENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLC 446



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 207/446 (46%), Gaps = 28/446 (6%)

Query: 26  SEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-------- 73
           S  + +YN LI+    + RISE   L   M++ G       Y      +C +        
Sbjct: 136 SPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALK 195

Query: 74  --QKAIKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGA--FQVLRL-------VQEA 121
             Q+ + +  R+ ++   P + T+N+++  +C   ++ E    F+ ++        + + 
Sbjct: 196 LHQEMLNDISRY-EINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQ 254

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           GL+ D   +  LI T  K GKV    ++   M+ +GI P++ TY +LI+G    G +  A
Sbjct: 255 GLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSA 314

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +  M SK  +PD + +N LI    ++  V+ A  +  EM   +    P+ IT  +L+
Sbjct: 315 RELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEM--LLVGKRPNVITYDSLL 372

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
           K    AG+VD A++++ ++  + I      Y I ++   +      A  ++ ++      
Sbjct: 373 KGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFK 432

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
            +   L+ LID    AGK+E A+E+ ++  N+G    +++Y+ ++          KA  L
Sbjct: 433 LEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVL 492

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            + M++    P + T N L+    + ++L + +++L  M    + P+ IT SI++    +
Sbjct: 493 IQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSK 552

Query: 422 KDDVEVGLMLLSQAK-EDGVIPNLVM 446
            +  +  L LL +   + GV  +L+M
Sbjct: 553 DEKYQECLHLLPRFPIQKGVDKHLLM 578



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 23/216 (10%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR-FFNVCKSQKAIKEAFRF 83
           V E +  YN ++  G+    I    D   KG+    KV  A+  F+V K+    + ++  
Sbjct: 346 VEEAMKLYNEMLLVGKRPNVITY--DSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSY-- 401

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKS 140
                  T   F  L  +C +    +  F+ ++L  E   +  K + +    LI    K+
Sbjct: 402 -------TYGIF--LDGLCKN----DCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKA 448

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK++  +E+F ++ N G EPNV TY  +I G  + GQV KA      M +    PD + +
Sbjct: 449 GKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITY 508

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           N L+    +S  ++    +L  M  +   V PD IT
Sbjct: 509 NTLMRGFYESNKLEEVVQLLHRMAQK--DVSPDAIT 542


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 184/445 (41%), Gaps = 41/445 (9%)

Query: 37   RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL------VPNP 90
            R G + E +DL E M +   L     Y       C+  K I  A    ++      VP+ 
Sbjct: 657  RYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGK-ILPALVILQMMLEKGVVPD- 714

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            T++   +L  +    +    ++    ++ + GL ADC  Y +L+    KS  V+ +  + 
Sbjct: 715  TVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMM 774

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             +M    + PN  +Y  L+ G  K GQ +K+   Y  M  K ++PD V +  LI    + 
Sbjct: 775  SDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSEC 834

Query: 211  GAVDRAFDVLAEMNAE-VHP--------------------------------VDPDHITI 237
            G +D A   L +M  E + P                                + P   T 
Sbjct: 835  GLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTF 894

Query: 238  GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             A++      G +D + +V   + +  ++     Y   +N   + G+ + A  + ++M  
Sbjct: 895  SAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKA 954

Query: 298  KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
             G++P EV  S++I      GK+E A  +       G+   + ++++LM +         
Sbjct: 955  IGIVPAEVAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIAD 1014

Query: 358  ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
            AL L   M+  +L+  V + N LIT LC    +   +++  +MKS GL PN  TY  L  
Sbjct: 1015 ALHLKRLMELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTG 1074

Query: 418  ACERKDDVEVGLMLLSQAKEDGVIP 442
            A      V+ G  LL   +E G+IP
Sbjct: 1075 AMYSTGRVQNGEELLEDIEERGLIP 1099



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 193/462 (41%), Gaps = 45/462 (9%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH Y   +++GR    + +LEDMER  +      Y+     +C+ +++ + AF   K + 
Sbjct: 267 LHWY---VKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTR-AFLLLKRMR 322

Query: 89  NPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              L+    T+N L++          A  V   +    L      YTT+I    ++ ++D
Sbjct: 323 KDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRID 382

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  EM   G+ P+  TY AL++G  K   +  A      ++S+ +  ++ +   LI
Sbjct: 383 KALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILI 442

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               Q G + +A  +L  M  +   +DPD IT  AL+       ++   +E+   + K  
Sbjct: 443 DGFCQVGEISKAKQILKSMFED--GIDPDVITYSALINGMCRMAKMHETKEILSRMQKSG 500

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           I     +YT  I    + G  + A   + D+ ++G++ + V  +AL+      G +  A 
Sbjct: 501 ILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANPVIHNALLHAFYREGMITEAE 560

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
              Q      IS   +S++ ++ +  +  N   A  +Y+ M      P V T   L+  L
Sbjct: 561 HFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYGYSPNVCTYQNLLRGL 620

Query: 385 CDGDQLPKTMEVLS---------DMKS-----LGLC---------------------PNT 409
           C G  L +  + +S         D K+     LG+C                     P+ 
Sbjct: 621 CQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDI 680

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            TY+ILL    RK  +   L++L    E GV+P+ V + C++
Sbjct: 681 HTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCLL 722



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 107/451 (23%), Positives = 195/451 (43%), Gaps = 17/451 (3%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---- 84
           LH++    R+G I+E     + M R  +   D V   R  +    +  I  AF  +    
Sbjct: 547 LHAF---YREGMITEAEHFRQYMSRMNI-SFDSVSFNRIIDSYCHRGNIVGAFSVYDDMV 602

Query: 85  KLVPNPTLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +   +P + T+ N+L  +C      + A Q +  + +     D K +  L+    + G +
Sbjct: 603 RYGYSPNVCTYQNLLRGLCQGGHLVQ-ARQFMSCLLDIPFAIDEKTFNALLLGICRYGTL 661

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   ++  +M+     P++HTY  L+ G  + G++  A     +M  K V PD V +  L
Sbjct: 662 DEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCL 721

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +      G V  A  V  E+  +   +  D I   +LM     +  V+  + +   +++ 
Sbjct: 722 LNGLINEGQVKAASYVFHEIICK-EGLYADCIAYNSLMNGYLKSRNVNTIKRMMSDMYQN 780

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            +      Y I ++   + G +  +  +Y  M +KG+ PD V    LI      G ++ A
Sbjct: 781 EVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIA 840

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            + L++   +GI    + +  L+ A S       AL+++  MK + + P+  T +A+I  
Sbjct: 841 VKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMING 900

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L     L  + +VL +M  +GL PN   Y  L+ A  R  +++    L  + K  G++P 
Sbjct: 901 LIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPA 960

Query: 444 LVMFKCII-GMCSRRYEKARTLNEHVLSFNS 473
            V    II G+C     +   L E V+ F+S
Sbjct: 961 EVAESSIIRGLC-----RCGKLEEAVIVFSS 986



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 155/351 (44%), Gaps = 14/351 (3%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+ +   +G+     ++  +M +  I  +V TY  ++    K G+   A      M   +
Sbjct: 232 LLNSLCTNGEFRKAEDMLQKMKSCHISNSV-TYNTILHWYVKKGRFKAALCVLEDMERDS 290

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           V+ D   +N +I    +     RAF +L  M  +   + PD  T   L+      G+++ 
Sbjct: 291 VQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRKD--DLTPDECTYNTLINGFFREGKINH 348

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           AR V+  + + N+  +   YT  I+   +    + A S+  +M   GV+P E+  SAL++
Sbjct: 349 ARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELTYSALLN 408

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                  +  A  ++++ K++GI++     + L+          KA ++ + M    + P
Sbjct: 409 GYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMFEDGIDP 468

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V T +ALI  +C   ++ +T E+LS M+  G+ PN + Y+ L+    +   V+  L   
Sbjct: 469 DVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVKEALKHF 528

Query: 433 SQAKEDGVIPNLVMFKCII------GMCS-----RRYEKARTLNEHVLSFN 472
                 G++ N V+   ++      GM +     R+Y     ++   +SFN
Sbjct: 529 VDIYRRGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFN 579



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 70/358 (19%), Positives = 139/358 (38%), Gaps = 37/358 (10%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+N ++         + A  VL  ++   ++AD   Y  +I    +  +    F +   M
Sbjct: 262 TYNTILHWYVKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRM 321

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               + P+  TY  LI+G  + G++  A   +  M  +N+ P    +  +I    ++  +
Sbjct: 322 RKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRI 381

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKA-C---------------------------- 244
           D+A  +L+EM  ++  V P  +T  AL+   C                            
Sbjct: 382 DKALSILSEM--QITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRT 439

Query: 245 ------ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
                    G++ +A+++ K + +  I      Y+  IN   +         +   M K 
Sbjct: 440 ILIDGFCQVGEISKAKQILKSMFEDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKS 499

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G++P++V  + LI +   AG V+ A +   +   +G+    + +++L+ A        +A
Sbjct: 500 GILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANPVIHNALLHAFYREGMITEA 559

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
               ++M  + +     + N +I + C    +     V  DM   G  PN  TY  LL
Sbjct: 560 EHFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYGYSPNVCTYQNLL 617


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 174/358 (48%), Gaps = 15/358 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF------RFFKLVP 88
           L + GR+S+   LL+ M  K L+     Y+   +   +    I EAF      RF  LVP
Sbjct: 305 LCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGN-IGEAFLLFAELRFRGLVP 363

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             ++ T+N L+       D + A ++   + + G   D   +T L+    K G +    E
Sbjct: 364 --SVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKE 421

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM+N G++P+   Y   I G  K G  +KAFG    M ++   PD + +N  I    
Sbjct: 422 LFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLH 481

Query: 209 QSGAVDRAFDVLAEM--NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           + G +  A +++ +M  N  V    PDH+T  +++ A   AG + +AR V+  +    I 
Sbjct: 482 KLGNLKEASELVKKMLYNGLV----PDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIF 537

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            +   YT+ I+  +  G  + A   + +M +KGV P+ +  +ALI+      K++ A++ 
Sbjct: 538 PSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKF 597

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
             E + +GIS    +Y+ L+    N  +WQ+AL LY+ M   +++P   T +AL+  L
Sbjct: 598 FTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHL 655



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 180/387 (46%), Gaps = 3/387 (0%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           K Q+A++   +  K+   P   T+N+L++  + S + E A ++++ +   GL+     Y 
Sbjct: 205 KVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYD 264

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            LI    + G++D    +  EM++ G  P + TY  ++ G  K G+V+ A     +M +K
Sbjct: 265 PLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNK 324

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           N+ PD V +N LI    + G +  AF + AE+      + P  +T   L+      G +D
Sbjct: 325 NLMPDLVSYNTLIYGYTRLGNIGEAFLLFAEL--RFRGLVPSVVTYNTLIDGLCRMGDLD 382

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A  +   + K+        +TI +    + G+   A  ++D+M  +G+ PD       I
Sbjct: 383 VAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRI 442

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                 G    AF + +E   +G    +I+Y+  +       N ++A EL + M    L 
Sbjct: 443 VGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLV 502

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P   T  ++I A      L K   V  +M S G+ P+ +TY++L+ +   +  +++ ++ 
Sbjct: 503 PDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILH 562

Query: 432 LSQAKEDGVIPNLVMFKCII-GMCSRR 457
             +  E GV PN++ +  +I G+C  R
Sbjct: 563 FFEMHEKGVHPNVITYNALINGLCKVR 589



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 173/395 (43%), Gaps = 11/395 (2%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++Y+ LIR    +G++ E   L E+M  +G +     Y+   + +CK  + + +A +   
Sbjct: 261 YTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGR-VSDARKLLD 319

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++ N    P L ++N L+       +   AF +   ++  GL      Y TLI    + G
Sbjct: 320 VMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMG 379

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            +D    +  EM+  G +P+V T+  L+ G  K G +  A   +  M ++ ++PDR  + 
Sbjct: 380 DLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYI 439

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
             I    + G   +AF +  EM A   P  PD IT    +      G +  A E+ K + 
Sbjct: 440 TRIVGELKLGDPSKAFGMQEEMLARGFP--PDLITYNVFIDGLHKLGNLKEASELVKKML 497

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              +      YT  I+     G    A +V+ +M  KG+ P  V  + LI      G+++
Sbjct: 498 YNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLK 557

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A     E   +G+   +I+Y++L+      +   +A + +  M++  + P   T   LI
Sbjct: 558 LAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILI 617

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
              C+     + + +  DM    + P++ T+S LL
Sbjct: 618 NENCNLGHWQEALRLYKDMLDREIQPDSCTHSALL 652



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/434 (23%), Positives = 190/434 (43%), Gaps = 21/434 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS------QKAIKEA 80
           +YN ++    +QG++ E + LL  M++ G L  D  Y+     +  S      ++ I+E 
Sbjct: 192 TYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEM 251

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTC 137
            R    V   T     ++   C   +  E +    RL +E    G       Y T++   
Sbjct: 252 LRLGLEVSAYTYDP--LIRGYCEKGQLDEAS----RLGEEMLSRGAVPTLVTYNTIMYGL 305

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            K G+V    ++   MVN  + P++ +Y  LI G  + G + +AF  +  +R + + P  
Sbjct: 306 CKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSV 365

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V +N LI    + G +D A  +  EM    H  DPD  T   L++     G +  A+E++
Sbjct: 366 VTYNTLIDGLCRMGDLDVAMRLKDEMIK--HGPDPDVFTFTILVRGFCKLGNLPMAKELF 423

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             +    ++     Y   I    + GD   A  + ++M  +G  PD +  +  ID     
Sbjct: 424 DEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKL 483

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G ++ A E++++    G+    ++Y+S++ A   A + +KA  ++  M S  + P+V T 
Sbjct: 484 GNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTY 543

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LI +     +L   +    +M   G+ PN ITY+ L+    +   ++      ++ + 
Sbjct: 544 TVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQA 603

Query: 438 DGVIPNLVMFKCII 451
            G+ PN   +  +I
Sbjct: 604 KGISPNKYTYTILI 617



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 104/206 (50%), Gaps = 1/206 (0%)

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D AREVY ++ +  I+ T   Y   ++   + G  + A  +   M K G +P++V  + 
Sbjct: 171 IDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNV 230

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           L++   H+G++E A E++QE    G+ V   +Y  L+          +A  L E M S  
Sbjct: 231 LVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRG 290

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             PT+ T N ++  LC   ++    ++L  M +  L P+ ++Y+ L+    R  ++    
Sbjct: 291 AVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAF 350

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMC 454
           +L ++ +  G++P++V +  +I G+C
Sbjct: 351 LLFAELRFRGLVPSVVTYNTLIDGLC 376



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 23/234 (9%)

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQ-LPKTMEVLSDMKSLGLCPNTITYSI 414
           +K L ++  M S  + P +   N ++  L D D  +    EV + M   G+ P  +TY+ 
Sbjct: 136 EKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNT 195

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472
           +L +  ++  V+  L LL Q ++ G +PN V +  ++   S     E+A+ L + +L   
Sbjct: 196 MLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLG 255

Query: 473 ------SGRPQI----ENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIR 521
                 +  P I    E      A  +  E +  G +PT+   + ++ G  +    +D R
Sbjct: 256 LEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDAR 315

Query: 522 ERL--VENLGVSADALKRSNLC---SLIDGFGEYDPRAFSLLEEAASFGIVPCV 570
           + L  + N  +  D +  + L    + +   GE    AF L  E    G+VP V
Sbjct: 316 KLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGE----AFLLFAELRFRGLVPSV 365


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 164/367 (44%), Gaps = 29/367 (7%)

Query: 90  PTLSTFNMLMSVCASS----KDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCAKSGK 142
           P L T+N ++  C         +   F  + L  E    G++ D   Y TL+    K G+
Sbjct: 168 PNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQ 227

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D  F++  EM    I PNV TY  +IDG AKAG++ +A   +  M+  ++  DRV +N 
Sbjct: 228 MDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNT 287

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L++   + G  + A +V  EM  E   +  D +T  AL+      G+ +  + V++ +  
Sbjct: 288 LLSIYAKLGRFEEALNVCKEM--ESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKA 345

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I      Y+  I+  S+ G ++ A  V+ +  K G+  D V  SALID     G VE+
Sbjct: 346 ERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVES 405

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNA-------------KNWQKALELYEHMKSIK 369
           A   L E   +GI   +++Y+S++ A   +             K   + ++++  + + K
Sbjct: 406 AVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKEDNQIIKIFGQLAAEK 465

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
                         LC        + V   M  L + PN +T+S +L AC R +  E   
Sbjct: 466 TCHAKKENRGRQEILC-------ILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDAS 518

Query: 430 MLLSQAK 436
           MLL + +
Sbjct: 519 MLLEELR 525



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 165/369 (44%), Gaps = 52/369 (14%)

Query: 155 NAGIEPNVHTYGALIDGCAKAG-------QVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++G++PN+ TY A+ID C K G       ++      +  M  + ++ D   +N L+ A 
Sbjct: 163 DSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAV 222

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G +D AF +++EM  +   + P+ +T   ++   A AG++D A  ++  +   +I  
Sbjct: 223 CKGGQMDLAFQIMSEMPRK--HIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGL 280

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   ++  ++ G +E A +V  +M   G+  D V  +AL+   G  GK E    + 
Sbjct: 281 DRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVF 340

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +E K + I   +++YS+L+   S    +Q+A+E++   K   LK  V   +ALI ALC  
Sbjct: 341 EEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKN 400

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV------EVG------------- 428
             +   +  L +M   G+ PN +TY+ ++ A  R   V      EVG             
Sbjct: 401 GLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKEDNQIIKIFGQ 460

Query: 429 ----------------------LMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
                                 L +  +  E  + PN+V F  I+  CSR   +E A  L
Sbjct: 461 LAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASML 520

Query: 465 NEHVLSFNS 473
            E +  F++
Sbjct: 521 LEELRLFDN 529



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 169/381 (44%), Gaps = 33/381 (8%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           + + + +YN L+    + G++     ++ +M RK ++     Y        K+ + + EA
Sbjct: 208 IEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGR-LDEA 266

Query: 81  FRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F  +   ++     ++N L+S+ A     E A  V + ++ +G+K D   Y  L+  
Sbjct: 267 LNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGG 326

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K GK + +  VF EM    I PN+ TY  LID  +K G   +A   +   +   +K D
Sbjct: 327 YGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKAD 386

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V+++ALI A  ++G V+ A   L EM  E   + P+ +T  +++ A   +G V+ A E 
Sbjct: 387 VVLYSALIDALCKNGLVESAVSFLDEMTKE--GIRPNVVTYNSIIDAFGRSGIVEDATE- 443

Query: 257 YKMIHKYNIKGTPEVYTI-----AINCC----SQTGDWEFAC--SVYDDMTKKGVIPDEV 305
                +   K   ++  I     A   C       G  E  C  +V+  M +  + P+ V
Sbjct: 444 ----SEVGDKEDNQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVV 499

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             SA+++        E A  +L+E +     V  +++  LMG   N   W +A  L++ +
Sbjct: 500 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYGDNV--WVQAQSLFDEV 557

Query: 366 KSIKLKPTVSTMNALITALCD 386
           K +      ST +A   AL D
Sbjct: 558 KQMD----SSTASAFYNALTD 574



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 147/341 (43%), Gaps = 43/341 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+    + GR  E +++ ++ME  G+   D V +         Q   +E  R F+ 
Sbjct: 284 SYNTLLSIYAKLGRFEEALNVCKEMESSGI-KKDAVTYNALLGGYGKQGKYEEVKRVFEE 342

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P L T++ L+ V +     + A +V R  ++AGLKAD  LY+ LI    K+G 
Sbjct: 343 MKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGL 402

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----------------QVAKAFGAYG 186
           V++      EM   GI PNV TY ++ID   ++G                Q+ K FG   
Sbjct: 403 VESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKEDNQIIKIFGQLA 462

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
             ++ + K +      ++            F  + E++     + P+ +T  A++ AC+ 
Sbjct: 463 AEKTCHAKKENRGRQEILCILA-------VFHKMHELD-----IKPNVVTFSAILNACSR 510

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDE 304
               + A  + + +  ++     +VY +A       GD  W  A S++D++ +       
Sbjct: 511 CNSFEDASMLLEELRLFD----NQVYGVAHGLLMGYGDNVWVQAQSLFDEVKQMDSSTAS 566

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
            F +AL D   H G+   A  ++ E K + +   + S S L
Sbjct: 567 AFYNALTDMLWHFGQRRGAQLVVLEGKRRHVWENMWSNSCL 607



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/148 (20%), Positives = 77/148 (52%), Gaps = 12/148 (8%)

Query: 326 ILQEAKNQG---ISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIK------LKPTVS 375
           +L+E  N+G   +   +++Y++++ AC     ++ +A E+++ M          ++  + 
Sbjct: 154 LLRELGNRGDSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIF 213

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N L+ A+C G Q+    +++S+M    + PN +TYS ++    +   ++  L L ++ 
Sbjct: 214 TYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEM 273

Query: 436 KEDGVIPNLVMFKCIIGMCSR--RYEKA 461
           K   +  + V +  ++ + ++  R+E+A
Sbjct: 274 KFASIGLDRVSYNTLLSIYAKLGRFEEA 301


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 176/396 (44%), Gaps = 35/396 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P++ T+++LM      +D E    +LR ++  G+K +   YT  I    ++ + D  + +
Sbjct: 228 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRI 287

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M N G +P+V T+  LI     AG+++ A   +  M+  + KPDRV +  L+   G 
Sbjct: 288 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 347

Query: 210 SG--------------------------------AVDRAFDVLAEMNAEVHP--VDPDHI 235
           +G                                 V R F+ L EM  E+    + P+  
Sbjct: 348 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEAL-EMFDEMKQKGIVPEQY 406

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           +  +L+     A +   A E++K +  +  K     + + IN   ++G+   A   Y+ M
Sbjct: 407 SYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELM 466

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             KG++PD V  +A++     +G++  A  +  E K  G+S   I+Y+ ++  CS A  +
Sbjct: 467 KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKF 526

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +A++++  M      P V  +N+LI  L    +  +   +   +K + L P   TY+ L
Sbjct: 527 DEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTL 586

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L    R+  V+  + LL +       PNL+ +  I+
Sbjct: 587 LAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTIL 622



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 180/424 (42%), Gaps = 11/424 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH V   ++SY   IR      R  E   +L  ME +G    D + H     V      I
Sbjct: 258 AHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGC-KPDVITHTVLIQVLCDAGRI 316

Query: 78  KEA----FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A    ++  K    P   T+  L+     + DS+   ++   ++  G   +   YT +
Sbjct: 317 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 376

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    + G+V    E+F EM   GI P  ++Y +LI G  KA +   A   +  M     
Sbjct: 377 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 436

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KP+       I   G+SG   +A      M ++   + PD +   A++   A +G++  A
Sbjct: 437 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSK--GIVPDVVAGNAVLFGLAKSGRLGMA 494

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           + V+  +    +      YT+ I CCS+   ++ A  ++ DM +   +PD + +++LID 
Sbjct: 495 KRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDT 554

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+ + A+ I  + K   +     +Y++L+         ++ + L E M      P 
Sbjct: 555 LYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPN 614

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + T N ++  LC    +   +++L  M + G  P+  +Y+ ++    +++       +  
Sbjct: 615 LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFC 674

Query: 434 QAKE 437
           Q K+
Sbjct: 675 QMKK 678



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 191/466 (40%), Gaps = 59/466 (12%)

Query: 26  SEQLHSYNRLIRQGRISE----CIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEA 80
           +E L  +    R+ R++     C  +LE M   G + DM     A  F+V + Q      
Sbjct: 106 AEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDM-----AEVFDVMQRQ------ 154

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                 +    + TF  +            A   L +++EAG+  +   Y  L+    KS
Sbjct: 155 ------IVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKS 208

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G      EV+  M+  G+ P+V TY  L+    K   V         M +  VKP+   +
Sbjct: 209 GFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSY 268

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
              I   GQ+   D A+ +LA+M  E     PD IT   L++   +AG++  A++V+  +
Sbjct: 269 TICIRVLGQAKRFDEAYRILAKMENE--GCKPDVITHTVLIQVLCDAGRISDAKDVFWKM 326

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            K + K     Y   ++     GD +    +++ M   G   + V  +A+ID     G+V
Sbjct: 327 KKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRV 386

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH---------------- 364
             A E+  E K +GI     SY+SL+     A  +  ALEL++H                
Sbjct: 387 FEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLF 446

Query: 365 -------------------MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
                              MKS  + P V   NA++  L    +L     V  ++K++G+
Sbjct: 447 INYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGV 506

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            P+TITY++++  C +    +  + +     E+  +P+++    +I
Sbjct: 507 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLI 552



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/449 (20%), Positives = 183/449 (40%), Gaps = 21/449 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVPN---P 90
           L + GR+     +  +++  G+   D + +      C       EA + F+ ++ N   P
Sbjct: 485 LAKSGRLGMAKRVFHELKAMGV-SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 543

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            +   N L+     +   + A+++   ++E  L+     Y TL+    + GKV  +  + 
Sbjct: 544 DVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 603

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM ++   PN+ TY  ++D   K G V  A      M +K   PD   +N +I    + 
Sbjct: 604 EEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 663

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
              + AF +  +M      + PD+ T+  ++ +    G +   +E   +I  Y ++  P 
Sbjct: 664 ERYNEAFSIFCQMK---KVLIPDYATLCTILPSFVKIGLM---KEALHIIKDYFLQ--PG 715

Query: 271 VYTIAINCCS------QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             T   +C S      +    E +    + +   G+  D+ FL  LI       K   A 
Sbjct: 716 SKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAH 775

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E++++ K+ G+S+    Y+SL+    +      A  L+  MK +   P   T N L+ A+
Sbjct: 776 ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 835

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
               ++ + ++V  +M   G     +TY+ ++    +   +E  + L       G  P  
Sbjct: 836 GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 895

Query: 445 VMFKCIIG--MCSRRYEKARTLNEHVLSF 471
             +  ++   + + R E A  L   +L +
Sbjct: 896 CTYGPLLDGLLKAGRIEDAENLFNEMLEY 924



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 135/334 (40%), Gaps = 2/334 (0%)

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+V  M EVF  M    ++ NV T+ A+  G    G +  A  A  +M+   +  +   +
Sbjct: 139 GRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTY 198

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N L+    +SG    A +V   M   V  V P   T   LM A      V+    + + +
Sbjct: 199 NGLVYFLVKSGFDREALEVYRVMM--VDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 256

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             + +K     YTI I    Q   ++ A  +   M  +G  PD +  + LI     AG++
Sbjct: 257 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 316

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A ++  + K        ++Y +L+    +  + Q  +E++  MK+      V    A+
Sbjct: 317 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 376

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I ALC   ++ + +E+  +MK  G+ P   +Y+ L+    + D     L L       G 
Sbjct: 377 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 436

Query: 441 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
            PN       I    +  E  + +  + L  + G
Sbjct: 437 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG 470



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 84/429 (19%), Positives = 172/429 (40%), Gaps = 46/429 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R+G++ E + LLE+M           YH+ +                   
Sbjct: 582 TYNTLLAGLGREGKVKEVMHLLEEM-----------YHSNY------------------- 611

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P L T+N ++     +     A  +L  +   G   D   Y T+I    K  + +  
Sbjct: 612 --PPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEA 669

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP----DRVVFNA 202
           F +F +M    I P+  T   ++    K G + +A     I++   ++P    DR   ++
Sbjct: 670 FSIFCQMKKVLI-PDYATLCTILPSFVKIGLMKEALH---IIKDYFLQPGSKTDRSSCHS 725

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L+    +   ++++ +  AE+ A    +  D   +  L+K      +   A E+ K    
Sbjct: 726 LMEGILKKAGIEKSIE-FAEIIAS-SGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKS 783

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           + +     +Y   I         + A  ++ +M + G  PDE   + L+D  G + ++E 
Sbjct: 784 FGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEE 843

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
             ++ +E   +G     ++Y++++     ++  ++A++LY ++ S    PT  T   L+ 
Sbjct: 844 MLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLD 903

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            L    ++     + ++M   G   N   Y+ILL       + E    L     + G+ P
Sbjct: 904 GLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINP 963

Query: 443 NLVMFKCII 451
           ++  +  II
Sbjct: 964 DIKSYTIII 972



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 110/244 (45%), Gaps = 8/244 (3%)

Query: 74  QKAIKEAFRFFKLVPNP--TLSTF---NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           +  I+++  F +++ +   TL  F    ++  +C   K  E A ++++  +  G+     
Sbjct: 733 KAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALE-AHELVKKFKSFGVSLKTG 791

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           LY +LI        +D    +F EM   G  P+  TY  L+D   K+ ++ +       M
Sbjct: 792 LYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEM 851

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
             K  +   V +N +I+   +S  +++A D+   + ++     P   T G L+     AG
Sbjct: 852 HRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQ--GFSPTPCTYGPLLDGLLKAG 909

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           +++ A  ++  + +Y  K    +Y I +N     G+ E  C ++ DM  +G+ PD    +
Sbjct: 910 RIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYT 969

Query: 309 ALID 312
            +ID
Sbjct: 970 IIID 973



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 77/372 (20%), Positives = 148/372 (39%), Gaps = 15/372 (4%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H+NY  +    L +YN ++    + G +++ +D+L  M  KG +     Y+   + + K 
Sbjct: 608 HSNYPPN----LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 663

Query: 74  QKAIKEAFRFF---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKL 129
           ++   EAF  F   K V  P  +T   ++         + A  +++    + G K D   
Sbjct: 664 ER-YNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSS 722

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
             +L+    K   ++   E    + ++GI  +      LI    K  +  +A       +
Sbjct: 723 CHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFK 782

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           S  V     ++N+LI        +D A  + AEM        PD  T   L+ A   + +
Sbjct: 783 SFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKE--LGCGPDEFTYNLLLDAMGKSMR 840

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           ++   +V + +H+   + T   Y   I+   ++   E A  +Y ++  +G  P       
Sbjct: 841 IEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGP 900

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           L+D    AG++E A  +  E    G       Y+ L+     A N +K   L++ M    
Sbjct: 901 LLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQG 960

Query: 370 LKPTVSTMNALI 381
           + P + +   +I
Sbjct: 961 INPDIKSYTIII 972



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 7/147 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    +  RI E + + E+M RKG       Y+     + KS++  +    ++ L
Sbjct: 827 TYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNL 886

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +    +PT  T+  L+     +   E A  +   + E G KA+C +Y  L+     +G  
Sbjct: 887 MSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNT 946

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALID 170
           + +  +F +MV+ GI P++ +Y  +ID
Sbjct: 947 EKVCHLFQDMVDQGINPDIKSYTIIID 973


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 185/404 (45%), Gaps = 12/404 (2%)

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           A R F+L      + +N L++    ++    A ++L ++   G  A    YTTLI    K
Sbjct: 2   ASRHFRL----DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCK 57

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           SG +DA   +  +M +AG  PNV TY ALIDG  KA +   A      M     +PD V 
Sbjct: 58  SGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVT 117

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +N+LI     +  +D A  VL E+  E   + PD +T    +     AG++D+  E+ + 
Sbjct: 118 YNSLIHGLCMANRMDDAGLVLQELMIESGRI-PDVVTYNTFISGLCKAGKLDKGLEMLEE 176

Query: 260 IHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + +  I  +P+V T    I+   +    + A  V+  M ++G +PD +  S ++D    A
Sbjct: 177 MDRGGI--SPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRA 234

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            +++   E+L+     G      +Y+ L+ A   A + + A   YE          V T 
Sbjct: 235 NRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTH 294

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           NA I ALC   + P    +L  M   G  PN ++Y+ ++    +  +V+    L  +  +
Sbjct: 295 NAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLD 354

Query: 438 DGVI-PNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI 478
            G   P+++ F  +I G C + R  +A+ L + + + N   P +
Sbjct: 355 SGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDV 398



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 114/268 (42%), Gaps = 46/268 (17%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN  I    + G++ + +++LE+M+R G+      + +    +CK+ + I +AF+ FK 
Sbjct: 153 TYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANR-IDDAFQVFKG 211

Query: 86  -----LVPNPTL---------------------------------STFNMLMSVCASSKD 107
                 VP+                                    +T+  L+     + D
Sbjct: 212 MLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGD 271

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
            E A        EAG   +   +   I    +SGK      +   M+ +G  PN+ +Y  
Sbjct: 272 IESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNF 331

Query: 168 LIDGCAKAGQVAKAFG-AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           +IDG  K+G V  A+  +  ++ S   KPD + FN LI+   ++G + +A  +L EM A+
Sbjct: 332 VIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAK 391

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAR 254
              V PD +T   ++   +  G + +A+
Sbjct: 392 NICV-PDVVTYNTMIDGQSKFGSLKQAK 418



 Score = 45.4 bits (106), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 21/222 (9%)

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M S   +   +  N LI  LC   +    +E+L  M + G   + +TY+ L+    +  D
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR--YEKARTLNE--------HVLSFNS 473
           ++    LL +  + G  PN+V +  +I G+C  R  ++  +T+           ++++NS
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNS 120

Query: 474 GRPQI--ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL--- 528
               +   N+     L++    I +G IP V   +  +  L      D    ++E +   
Sbjct: 121 LIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRG 180

Query: 529 GVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 568
           G+S D +     CS+I G  + +    AF + +     G VP
Sbjct: 181 GISPDVV---TFCSIISGLCKANRIDDAFQVFKGMLERGCVP 219


>gi|242038885|ref|XP_002466837.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
 gi|241920691|gb|EER93835.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
          Length = 1014

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 106/450 (23%), Positives = 188/450 (41%), Gaps = 39/450 (8%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + G + E +DL E M +   L     Y       C+  K I  A    +++ +    P  
Sbjct: 530 KYGTLDEALDLCEKMVKNNCLPDIHTYTILLSGFCRKGK-ILPALIMLQMMLDKGVVPDT 588

Query: 93  STFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             +  L++   +    + A  V + ++ + GL ADC  Y +L+    K G ++ +  +  
Sbjct: 589 VAYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGNINTIKRMMS 648

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M  + + PN  +Y  L+ G  K GQ +K+   Y  M  K ++PD V +  LI    + G
Sbjct: 649 DMYQSEVYPNSASYNILMHGYVKGGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECG 708

Query: 212 AVDRAFDVLAEMNAE-VHP--------------------------------VDPDHITIG 238
            +D A   L +M  E + P                                + P   T  
Sbjct: 709 LIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQLFNCMKWLRMSPSSKTYS 768

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           A++        +D++ EV + + +  ++     Y   +N   + G  + A  + ++M   
Sbjct: 769 AMINGLIRKNYLDQSHEVLREMLQVGLQPNHTHYIALVNAKCRVGKIDRAFRLKEEMKAL 828

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G++P +V  S++I      GK+E A  +       G+   + ++++LM           A
Sbjct: 829 GIVPADVAESSIIRGLCKCGKLEEAVIVFSTMMRSGMVPTVATFTTLMHCLCKESKIADA 888

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           L L   M+S +LK  V + N LIT LC   ++   +++  +MKS GL PN  TY  L  A
Sbjct: 889 LHLKRLMESCRLKVDVVSYNVLITGLCKDKRISDALDLYEEMKSKGLWPNVTTYITLTGA 948

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
                 ++ G  LL   +E G+IP  V  +
Sbjct: 949 MYSTGIMQNGEELLEDIEERGLIPVYVQLE 978



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 135/553 (24%), Positives = 237/553 (42%), Gaps = 43/553 (7%)

Query: 31  SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KL 86
           +Y+ LI +G I+E     + M R  +   D V      +    +  I EAF  +    + 
Sbjct: 419 TYSALINEGMITEAEHFRQYMSRMKI-SFDSVSFNCIIDSYCHRGNIVEAFTVYDAMVRY 477

Query: 87  VPNPTLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
             +P + T+ N+L  +C      + A Q +  + +     D K +  L+    K G +D 
Sbjct: 478 GHSPNVCTYQNLLRGLCQGGHLVQ-AKQFMFCLLDIPSAIDEKTFNALLLGICKYGTLDE 536

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++  +MV     P++HTY  L+ G  + G++  A     +M  K V PD V +  L+ 
Sbjct: 537 ALDLCEKMVKNNCLPDIHTYTILLSGFCRKGKILPALIMLQMMLDKGVVPDTVAYTCLLN 596

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
                G V  A  V  E+  +   +  D I   +LM      G ++  + +   +++  +
Sbjct: 597 GLINEGQVKAASYVFQEIICK-EGLYADCIAYNSLMNGYLKGGNINTIKRMMSDMYQSEV 655

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 Y I ++   + G +  +  +Y  M +KG+ PD V    LI      G ++ A +
Sbjct: 656 YPNSASYNILMHGYVKGGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVK 715

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            L++   +GI    + +  L+ A S       AL+L+  MK +++ P+  T +A+I  L 
Sbjct: 716 FLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQLFNCMKWLRMSPSSKTYSAMINGLI 775

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             + L ++ EVL +M  +GL PN   Y  L+ A  R   ++    L  + K  G++P  V
Sbjct: 776 RKNYLDQSHEVLREMLQVGLQPNHTHYIALVNAKCRVGKIDRAFRLKEEMKALGIVPADV 835

Query: 446 MFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
               II G+C     K   L E                   A++V+   + +G +PTV  
Sbjct: 836 AESSIIRGLC-----KCGKLEE-------------------AVIVFSTMMRSGMVPTVAT 871

Query: 505 VSKVLGCL---QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR---AFSLL 558
            + ++ CL       +A   +RL+E+  +  D +  +    LI G  + D R   A  L 
Sbjct: 872 FTTLMHCLCKESKIADALHLKRLMESCRLKVDVVSYN---VLITGLCK-DKRISDALDLY 927

Query: 559 EEAASFGIVPCVS 571
           EE  S G+ P V+
Sbjct: 928 EEMKSKGLWPNVT 940



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 138/604 (22%), Positives = 238/604 (39%), Gaps = 99/604 (16%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK--- 85
           LH Y   +++GR    + +LEDMER  +      Y+     +C+ +++ + AF   K   
Sbjct: 264 LHWY---VKKGRFKAALCVLEDMERDSIPADIYTYNIMIDKLCRIKRSAR-AFLLLKRMR 319

Query: 86  ---LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
              L+P+    T+N L++          A  V   +           YTT+I    ++ +
Sbjct: 320 KDDLIPDE--CTYNTLINGFFGEGKINHAHYVFNHMLRQTFVPSVATYTTMIDGYCRNRR 377

Query: 143 VDAMFEVFHE--------------------MVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           +D    V  E                    M+  GI+P++ TY ALI+     G + +A 
Sbjct: 378 IDKALSVLSEMQITGVMPSEISKAKQILKSMLEDGIDPDIVTYSALIN----EGMITEAE 433

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-------------- 228
                M    +  D V FN +I +    G +  AF V   M    H              
Sbjct: 434 HFRQYMSRMKISFDSVSFNCIIDSYCHRGNIVEAFTVYDAMVRYGHSPNVCTYQNLLRGL 493

Query: 229 -------------------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
                              P   D  T  AL+      G +D A ++ + + K N     
Sbjct: 494 CQGGHLVQAKQFMFCLLDIPSAIDEKTFNALLLGICKYGTLDEALDLCEKMVKNNCLPDI 553

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YTI ++   + G    A  +   M  KGV+PD V  + L++   + G+V+AA  + QE
Sbjct: 554 HTYTILLSGFCRKGKILPALIMLQMMLDKGVVPDTVAYTCLLNGLINEGQVKAASYVFQE 613

Query: 330 AK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G+    I+Y+SLM       N      +   M   ++ P  ++ N L+     G 
Sbjct: 614 IICKEGLYADCIAYNSLMNGYLKGGNINTIKRMMSDMYQSEVYPNSASYNILMHGYVKGG 673

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           Q  K++ +   M   G+ P+ +TY +L++       +++ +  L +   +G+ P+ ++F 
Sbjct: 674 QFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFD 733

Query: 449 CIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 508
            +I   S   EK++  N   L FN        KW  ++             P+ +  S +
Sbjct: 734 ILITAFS---EKSKMHNALQL-FNC------MKWLRMS-------------PSSKTYSAM 770

Query: 509 L-GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDG---FGEYDPRAFSLLEEAASF 564
           + G ++  Y     E L E L V       ++  +L++     G+ D RAF L EE  + 
Sbjct: 771 INGLIRKNYLDQSHEVLREMLQVGLQP-NHTHYIALVNAKCRVGKID-RAFRLKEEMKAL 828

Query: 565 GIVP 568
           GIVP
Sbjct: 829 GIVP 832



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 158/395 (40%), Gaps = 57/395 (14%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++T N+L++   ++ +   A  +L+ ++   L ++   Y T++    K G+  A   V  
Sbjct: 223 VTTCNILLNSLCTNGEFRKAEDMLQKMKTCRL-SNSVTYNTILHWYVKKGRFKAALCVLE 281

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M    I  +++TY  +ID   +  + A+AF     MR  ++ PD   +N LI      G
Sbjct: 282 DMERDSIPADIYTYNIMIDKLCRIKRSARAFLLLKRMRKDDLIPDECTYNTLINGFFGEG 341

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A  V   M  +     P   T   ++       ++D+A  V   + +  I G    
Sbjct: 342 KINHAHYVFNHMLRQTFV--PSVATYTTMIDGYCRNRRIDKALSV---LSEMQITGV--- 393

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
                       +   A  +   M + G+ PD V  SALI+     G +  A    Q   
Sbjct: 394 ---------MPSEISKAKQILKSMLEDGIDPDIVTYSALIN----EGMITEAEHFRQYMS 440

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
              IS   +S++ ++ +  +  N  +A  +Y+ M      P V T   L+  LC G  L 
Sbjct: 441 RMKISFDSVSFNCIIDSYCHRGNIVEAFTVYDAMVRYGHSPNVCTYQNLLRGLCQGGHLV 500

Query: 392 KT---MEVLSDMKS-----------LGLC---------------------PNTITYSILL 416
           +    M  L D+ S           LG+C                     P+  TY+ILL
Sbjct: 501 QAKQFMFCLLDIPSAIDEKTFNALLLGICKYGTLDEALDLCEKMVKNNCLPDIHTYTILL 560

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               RK  +   L++L    + GV+P+ V + C++
Sbjct: 561 SGFCRKGKILPALIMLQMMLDKGVVPDTVAYTCLL 595



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/331 (19%), Positives = 132/331 (39%), Gaps = 20/331 (6%)

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           A+F     +++     N   +  L+    K  +V  A  A   M     K   +  N ++
Sbjct: 136 AIFTSLLRIISRFDSTNHVVFELLVKAYVKERKVLDAAVAVLFMDDCGFKASPIACNTIL 195

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            A  + G     +  L E  A   P+D    T   L+ +    G+  +A ++ + +    
Sbjct: 196 RALVEQGESKYVWLFLRESLAHNFPLDVT--TCNILLNSLCTNGEFRKAEDMLQKMKTCR 253

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +  +   Y   ++   + G ++ A  V +DM +  +  D    + +ID      +   AF
Sbjct: 254 LSNSV-TYNTILHWYVKKGRFKAALCVLEDMERDSIPADIYTYNIMIDKLCRIKRSARAF 312

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +L+  +   +     +Y++L+           A  ++ HM      P+V+T   +I   
Sbjct: 313 LLLKRMRKDDLIPDECTYNTLINGFFGEGKINHAHYVFNHMLRQTFVPSVATYTTMIDGY 372

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++ K + VLS+M+  G+ P+ I+ +                 +L    EDG+ P++
Sbjct: 373 CRNRRIDKALSVLSEMQITGVMPSEISKA---------------KQILKSMLEDGIDPDI 417

Query: 445 VMFKCII--GMCSRRYEKARTLNEHVLSFNS 473
           V +  +I  GM +      + ++   +SF+S
Sbjct: 418 VTYSALINEGMITEAEHFRQYMSRMKISFDS 448



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/328 (19%), Positives = 125/328 (38%), Gaps = 33/328 (10%)

Query: 13  YPNGKHANY-------AHDVSEQLHSYNRLIRQG-------------RISEC------ID 46
           YPN    N            S+ L+ Y  ++R+G              +SEC      + 
Sbjct: 656 YPNSASYNILMHGYVKGGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVK 715

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK----LVPNPTLSTFNMLMSVC 102
            LE M  +G+   D++           +  +  A + F     L  +P+  T++ +++  
Sbjct: 716 FLEKMVLEGIFP-DRLVFDILITAFSEKSKMHNALQLFNCMKWLRMSPSSKTYSAMINGL 774

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
                 + + +VLR + + GL+ +   Y  L+    + GK+D  F +  EM   GI P  
Sbjct: 775 IRKNYLDQSHEVLREMLQVGLQPNHTHYIALVNAKCRVGKIDRAFRLKEEMKALGIVPAD 834

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
               ++I G  K G++ +A   +  M    + P    F  L+    +   +  A  +   
Sbjct: 835 VAESSIIRGLCKCGKLEEAVIVFSTMMRSGMVPTVATFTTLMHCLCKESKIADALHLKRL 894

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  E   +  D ++   L+       ++  A ++Y+ +    +      Y         T
Sbjct: 895 M--ESCRLKVDVVSYNVLITGLCKDKRISDALDLYEEMKSKGLWPNVTTYITLTGAMYST 952

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           G  +    + +D+ ++G+IP  V L  L
Sbjct: 953 GIMQNGEELLEDIEERGLIPVYVQLENL 980


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 186/443 (41%), Gaps = 42/443 (9%)

Query: 53  RKGLLDMDKVYHARFFNVCKSQKAIKEA----FR-FFKLVPNPTLSTFNMLMSVCASSKD 107
           R+G+    +  +A    + +S   + +A    FR   +L  +P   TFN+L+    S   
Sbjct: 164 RRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGT 223

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
              A   L  +Q  GL  D   Y TL+    + G +     +   M   GI P   TY  
Sbjct: 224 LADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNT 283

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+   A+ G + +A      M +   +PD   +N L     Q+G VD AF +  EM   +
Sbjct: 284 LVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEME-RL 342

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
               PD +T   L+ AC        A  + + +    +K T   + I +    + G  E 
Sbjct: 343 GTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEE 402

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-------- 339
           A    + + ++G+ PD +  + LID    AG V  AF ++ E   +G+ +          
Sbjct: 403 ALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLY 462

Query: 340 ---------------------------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                                      +SY ++M A     N + AL L++ M   KL P
Sbjct: 463 NLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIP 522

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           ++ST N LI  LC  ++L + ++ L++    GL P+  TY+I++ A  ++ D+E      
Sbjct: 523 SISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFH 582

Query: 433 SQAKEDGVIPNLVMFKCII-GMC 454
           ++  E+   P++V    ++ G+C
Sbjct: 583 NKMVENSFKPDVVTCNTLMNGLC 605



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 203/476 (42%), Gaps = 25/476 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G I +   ++E M   G     + Y+     +C++ K + EAFR    
Sbjct: 280 TYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGK-VDEAFRLKDE 338

Query: 87  VPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +       P + T+N L+  C   + S  A ++L  +++ G+K     +  ++ +  K G
Sbjct: 339 MERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEG 398

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K++       ++   G+ P+V TY  LID   KAG VAKAF     M  K +K D    N
Sbjct: 399 KLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLN 458

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            ++    +    + A ++L   +       PD ++ G +M A       + A  ++  + 
Sbjct: 459 TVLYNLCKMKRYEDAEELL--HSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMI 516

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  +  +   Y   I    +    + A    ++  +KG++PDE   + +I      G +E
Sbjct: 517 ERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLE 576

Query: 322 AAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            AF    +         +++ ++LM G C + K   KAL+L+E       K  V T N L
Sbjct: 577 NAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGK-LDKALKLFESWVEKGKKVDVITYNTL 635

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I ++C    +   +    DM+  GL P+  TY+++L A       E    +L +  + G 
Sbjct: 636 IQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGK 695

Query: 441 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN--KWTSLALMVYREAI 494
           +     F C +        K  + +E  +  + G+P+ E+  K    AL  Y E +
Sbjct: 696 LSQ--SFACPL-------LKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERL 742



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 331 KNQGISVGIISYSSLMGACSNAKNW--QKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + +G+   + + ++++ A S + +   Q +L+++  +  ++L P   T N L+   C   
Sbjct: 163 RRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKG 222

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L   +  LS M+  GL P+ +TY+ LL A  RK  +     LL++ K DG+ P    + 
Sbjct: 223 TLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYN 282

Query: 449 CIIGMCSR 456
            ++   +R
Sbjct: 283 TLVSAFAR 290


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 190/436 (43%), Gaps = 21/436 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL------ 86
           N L R+GRI E + LL+ M   GL      Y      +CK    +       K+      
Sbjct: 192 NGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHI 251

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +PN  + +  ++ S+C   + S+ A  +   +QE G+  D   Y ++I     SG+    
Sbjct: 252 IPNVVIYS-AIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  EM+   I P+V TY ALI+   K G+  +A   Y  M  + + P+ + ++++I  
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   +D A  +   M  +     P+ IT   L+     A ++D   E+   + +  + 
Sbjct: 370 FCKQNRLDAAEHMFYLMATK--GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLV 427

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA--- 323
                Y   I+     GD   A  +  +M   G+ PD V    L+D     GK++ A   
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 324 FEILQEAKN--------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
           F+++Q++K          G+   + +Y+ L+    N   + +A ELYE M    + P   
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T +++I  LC   +L +  ++   M S    PN +T++ L+    +   V+ GL L  + 
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 436 KEDGVIPNLVMFKCII 451
              G++ N + +  +I
Sbjct: 608 GRRGIVANAITYITLI 623



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 165/365 (45%), Gaps = 8/365 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +FN+L+    S      A      + + GL  D   +TTL+       +V    + FH+M
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                 PNV T+  L++G  + G++ +A      M    ++P ++ +  ++    + G  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++L +M  EV  + P+ +   A++ +    G+   A+ ++  + +  I   P+++T
Sbjct: 236 VSALNLLRKME-EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI--FPDLFT 292

Query: 274 ---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
              + +  CS +G W  A  +  +M ++ + PD V  +ALI+     GK   A E+  E 
Sbjct: 293 YNSMIVGFCS-SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +GI    I+YSS++           A  ++  M +    P + T N LI   C   ++
Sbjct: 352 LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRI 411

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              ME+L +M   GL  +T TY+ L+       D+   L LL +    G+ P++V    +
Sbjct: 412 DDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTL 471

Query: 451 I-GMC 454
           + G+C
Sbjct: 472 LDGLC 476



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 195/434 (44%), Gaps = 21/434 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           ++R  R    I L + MERK +      ++      C   K   A+    +  KL  +P 
Sbjct: 89  VVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPD 148

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           + TF  L+  +C   + SE A      + E   + +   +TTL+    + G++     + 
Sbjct: 149 VVTFTTLLHGLCVEDRVSE-ALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALL 207

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVVFNALITACGQ 209
             M+  G++P   TYG ++DG  K G    A      M    ++ P+ V+++A+I +  +
Sbjct: 208 DRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCK 267

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G    A ++  EM  +   + PD  T  +++    ++G+   A ++ + + +  I    
Sbjct: 268 DGRHSDAQNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   IN   + G +  A  +YD+M  +G+IP+ +  S++ID      +++AA  +   
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G S  +I++++L+     AK     +EL   M    L    +T N LI        
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVA-CER---KDDVEVGLMLLSQAKED------- 438
           L   +++L +M S GLCP+ +T   LL   C+    KD +E+   ++ ++K+D       
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM-FKVMQKSKKDLDASHPF 504

Query: 439 -GVIPNLVMFKCII 451
            GV P++  +  +I
Sbjct: 505 NGVEPDVQTYNILI 518



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 167/388 (43%), Gaps = 41/388 (10%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    ++G+  E  +L ++M  +G++     Y +     CK Q  +  A
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRLDAA 379

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F L+     +P L TFN L+     +K  +   ++L  + E GL AD   Y TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
               G ++A  ++  EM+++G+ P++ T   L+DG    G++  A   + +M+      D
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP---VDPDHITIGALMKACANAGQVDRA 253
                                          HP   V+PD  T   L+    N G+   A
Sbjct: 500 -----------------------------ASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E+Y+ +    I      Y+  I+   +    + A  ++D M  K   P+ V  + LI+ 
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+V+   E+  E   +GI    I+Y +L+       N   AL++++ M S  + P 
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMK 401
             T+  ++T L   ++L + + +L  ++
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 146/372 (39%), Gaps = 19/372 (5%)

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A D+ ++M     P+ P  +    LM       + D    +Y+ + +  I+     
Sbjct: 59  GLEDAIDLFSDM-LRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYS 116

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           + I I C        FA S +  +TK G+ PD V  + L+       +V  A +   +  
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMF 176

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
                  ++++++LM          +A+ L + M    L+PT  T   ++  +C      
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 392 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC- 449
             + +L  M+ +  + PN + YS ++ +  +         L ++ +E G+ P+L  +   
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 450 IIGMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 497
           I+G CS  R+  A         R ++  V+++N+       E K+   A  +Y E +  G
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE-AEELYDEMLPRG 355

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAF 555
            IP     S ++         D  E +   +     +       +LIDG+   +      
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 556 SLLEEAASFGIV 567
            LL E    G+V
Sbjct: 416 ELLHEMTETGLV 427


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 190/436 (43%), Gaps = 21/436 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL------ 86
           N L R+GRI E + LL+ M   GL      Y      +CK    +       K+      
Sbjct: 192 NGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHI 251

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +PN  + +  ++ S+C   + S+ A  +   +QE G+  D   Y ++I     SG+    
Sbjct: 252 IPNVVIYS-AIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  EM+   I P+V TY ALI+   K G+  +A   Y  M  + + P+ + ++++I  
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   +D A  +   M  +     P+ IT   L+     A ++D   E+   + +  + 
Sbjct: 370 FCKQNRLDAAEHMFYLMATK--GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLV 427

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA--- 323
                Y   I+     GD   A  +  +M   G+ PD V    L+D     GK++ A   
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 324 FEILQEAKN--------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
           F+++Q++K          G+   + +Y+ L+    N   + +A ELYE M    + P   
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T +++I  LC   +L +  ++   M S    PN +T++ L+    +   V+ GL L  + 
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 436 KEDGVIPNLVMFKCII 451
              G++ N + +  +I
Sbjct: 608 GRRGIVANAITYITLI 623



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 197/436 (45%), Gaps = 25/436 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQKAIKEAFRFFKLVPN 89
           ++R  R    I L + MERK +     +Y       C     K   A+    +  KL  +
Sbjct: 89  VVRMERPDLVISLYQKMERKQI--RCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLH 146

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + TFN L+  +C   + SE A  +   + E   + +   +TTL+    + G++     
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSE-ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVA 205

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVVFNALITAC 207
           +   M+  G++P   TYG ++DG  K G    A      M    ++ P+ V+++A+I + 
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G    A ++  EM  +   + PD  T  +++    ++G+   A ++ + + +  I  
Sbjct: 266 CKDGRHSDAQNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISP 323

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   IN   + G +  A  +YD+M  +G+IP+ +  S++ID      +++AA  + 
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                +G S  +I++++L+     AK     +EL   M    L    +T N LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER---KDDVEVGLMLLSQAKED----- 438
             L   +++L +M S GLCP+ +T   LL   C+    KD +E+   ++ ++K+D     
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM-FKVMQKSKKDLDASH 502

Query: 439 ---GVIPNLVMFKCII 451
              GV P++  +  +I
Sbjct: 503 PFNGVEPDVQTYNILI 518



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 163/365 (44%), Gaps = 8/365 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +F +L+    S      A      + + GL  D   + TL+       +V     +FH+M
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                 PNV T+  L++G  + G++ +A      M    ++P ++ +  ++    + G  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++L +M  EV  + P+ +   A++ +    G+   A+ ++  + +  I   P+++T
Sbjct: 236 VSALNLLRKME-EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI--FPDLFT 292

Query: 274 ---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
              + +  CS +G W  A  +  +M ++ + PD V  +ALI+     GK   A E+  E 
Sbjct: 293 YNSMIVGFCS-SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +GI    I+YSS++           A  ++  M +    P + T N LI   C   ++
Sbjct: 352 LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRI 411

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              ME+L +M   GL  +T TY+ L+       D+   L LL +    G+ P++V    +
Sbjct: 412 DDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTL 471

Query: 451 I-GMC 454
           + G+C
Sbjct: 472 LDGLC 476



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 167/388 (43%), Gaps = 41/388 (10%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    ++G+  E  +L ++M  +G++     Y +     CK Q  +  A
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRLDAA 379

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F L+     +P L TFN L+     +K  +   ++L  + E GL AD   Y TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
               G ++A  ++  EM+++G+ P++ T   L+DG    G++  A   + +M+      D
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP---VDPDHITIGALMKACANAGQVDRA 253
                                          HP   V+PD  T   L+    N G+   A
Sbjct: 500 -----------------------------ASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E+Y+ +    I      Y+  I+   +    + A  ++D M  K   P+ V  + LI+ 
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+V+   E+  E   +GI    I+Y +L+       N   AL++++ M S  + P 
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMK 401
             T+  ++T L   ++L + + +L  ++
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 147/331 (44%), Gaps = 6/331 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  L+    +  + D +  ++ +M    I  +++++  LI       ++  A   +G + 
Sbjct: 82  FCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKIT 141

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
              + PD V FN L+        V  A ++  +M        P+ +T   LM      G+
Sbjct: 142 KLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT--CRPNVVTFTTLMNGLCREGR 199

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLS 308
           +  A  +   + +  ++ T   Y   ++   + GD   A ++   M +   +IP+ V  S
Sbjct: 200 IVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYS 259

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKS 367
           A+ID     G+   A  +  E + +GI   + +Y+S++ G CS+ + W  A +L + M  
Sbjct: 260 AIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR-WSDAEQLLQEMLE 318

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
            K+ P V T NALI A     +  +  E+  +M   G+ PNTITYS ++    +++ ++ 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
              +       G  PNL+ F  +I G C  +
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 147/372 (39%), Gaps = 19/372 (5%)

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A D+ ++M     P+ P  +    LM       + D    +Y+ + +  I+     
Sbjct: 59  GLEDAIDLFSDM-LRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYS 116

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +TI I C        FA S +  +TK G+ PD V  + L+       +V  A  +  +  
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
                  ++++++LM          +A+ L + M    L+PT  T   ++  +C      
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 392 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC- 449
             + +L  M+ +  + PN + YS ++ +  +         L ++ +E G+ P+L  +   
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 450 IIGMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 497
           I+G CS  R+  A         R ++  V+++N+       E K+   A  +Y E +  G
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE-AEELYDEMLPRG 355

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAF 555
            IP     S ++         D  E +   +     +       +LIDG+   +      
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 556 SLLEEAASFGIV 567
            LL E    G+V
Sbjct: 416 ELLHEMTETGLV 427


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 190/436 (43%), Gaps = 21/436 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL------ 86
           N L R+GRI E + LL+ M   GL      Y      +CK    +       K+      
Sbjct: 192 NGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHI 251

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +PN  + +  ++ S+C   + S+ A  +   +QE G+  D   Y ++I     SG+    
Sbjct: 252 IPNVVIYS-AIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  EM+   I P+V TY ALI+   K G+  +A   Y  M  + + P+ + ++++I  
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   +D A  +   M  +     P+ IT   L+     A ++D   E+   + +  + 
Sbjct: 370 FCKQNRLDAAEHMFYLMATK--GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLV 427

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA--- 323
                Y   I+     GD   A  +  +M   G+ PD V    L+D     GK++ A   
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 324 FEILQEAKN--------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
           F+++Q++K          G+   + +Y+ L+    N   + +A ELYE M    + P   
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T +++I  LC   +L +  ++   M S    PN +T++ L+    +   V+ GL L  + 
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 436 KEDGVIPNLVMFKCII 451
              G++ N + +  +I
Sbjct: 608 GRRGIVANAITYITLI 623



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 165/365 (45%), Gaps = 8/365 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +FN+L+    S      A      + + GL  D   +TTL+       +V     +FH+M
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQM 175

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                 PNV T+  L++G  + G++ +A      M    ++P ++ +  ++    + G  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++L +M  EV  + P+ +   A++ +    G+   A+ ++  + +  I   P+++T
Sbjct: 236 VSALNLLRKME-EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI--FPDLFT 292

Query: 274 ---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
              + +  CS +G W  A  +  +M ++ + PD V  +ALI+     GK   A E+  E 
Sbjct: 293 YNSMIVGFCS-SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +GI    I+YSS++           A  ++  M +    P + T N LI   C   ++
Sbjct: 352 LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRI 411

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              ME+L +M   GL  +T TY+ L+       D+   L LL +    G+ P++V    +
Sbjct: 412 DDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTL 471

Query: 451 I-GMC 454
           + G+C
Sbjct: 472 LDGLC 476



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 196/434 (45%), Gaps = 21/434 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           ++R  R    I L + MERK +      ++      C   K   A+    +  KL  +P 
Sbjct: 89  VVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPD 148

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           + TF  L+  +C   + SE A  +   + E   + +   +TTL+    + G++     + 
Sbjct: 149 VVTFTTLLHGLCVEDRVSE-ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALL 207

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVVFNALITACGQ 209
             M+  G++P   TYG ++DG  K G    A      M    ++ P+ V+++A+I +  +
Sbjct: 208 DRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCK 267

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G    A ++  EM  +   + PD  T  +++    ++G+   A ++ + + +  I    
Sbjct: 268 DGRHSDAQNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDV 325

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   IN   + G +  A  +YD+M  +G+IP+ +  S++ID      +++AA  +   
Sbjct: 326 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G S  +I++++L+     AK     +EL   M    L    +T N LI        
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVA-CER---KDDVEVGLMLLSQAKED------- 438
           L   +++L +M S GLCP+ +T   LL   C+    KD +E+   ++ ++K+D       
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM-FKVMQKSKKDLDASHPF 504

Query: 439 -GVIPNLVMFKCII 451
            GV P++  +  +I
Sbjct: 505 NGVEPDVQTYNILI 518



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 167/388 (43%), Gaps = 41/388 (10%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    ++G+  E  +L ++M  +G++     Y +     CK Q  +  A
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRLDAA 379

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F L+     +P L TFN L+     +K  +   ++L  + E GL AD   Y TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
               G ++A  ++  EM+++G+ P++ T   L+DG    G++  A   + +M+      D
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP---VDPDHITIGALMKACANAGQVDRA 253
                                          HP   V+PD  T   L+    N G+   A
Sbjct: 500 -----------------------------ASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E+Y+ +    I      Y+  I+   +    + A  ++D M  K   P+ V  + LI+ 
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+V+   E+  E   +GI    I+Y +L+       N   AL++++ M S  + P 
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMK 401
             T+  ++T L   ++L + + +L  ++
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 146/372 (39%), Gaps = 19/372 (5%)

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A D+ ++M     P+ P  +    LM       + D    +Y+ + +  I+     
Sbjct: 59  GLEDAIDLFSDM-LRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYS 116

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           + I I C        FA S +  +TK G+ PD V  + L+       +V  A  +  +  
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMF 176

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
                  ++++++LM          +A+ L + M    L+PT  T   ++  +C      
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 392 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC- 449
             + +L  M+ +  + PN + YS ++ +  +         L ++ +E G+ P+L  +   
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 450 IIGMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 497
           I+G CS  R+  A         R ++  V+++N+       E K+   A  +Y E +  G
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE-AEELYDEMLPRG 355

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAF 555
            IP     S ++         D  E +   +     +       +LIDG+   +      
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 556 SLLEEAASFGIV 567
            LL E    G+V
Sbjct: 416 ELLHEMTETGLV 427


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 112/467 (23%), Positives = 203/467 (43%), Gaps = 47/467 (10%)

Query: 82  RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  KL  +PTL TFN L+  +C   + SE     L L  +   K +   +TTL+    + 
Sbjct: 40  KLTKLGFHPTLVTFNTLLHGLCVEDRVSEA----LDLFHQM-CKPNVVTFTTLMNGLCRE 94

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVV 199
           G+V     +   MV  G++PN  TYG ++DG  K G    A      M    ++KPD V+
Sbjct: 95  GRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVI 154

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           ++A+I    + G    A ++  EM  +   + PD +T   ++    ++G+   A+ + + 
Sbjct: 155 YSAIIDGLWKDGRHTDAQNLFIEMQDK--GIFPDIVTYSCMINGFCSSGKWSEAQRLLQE 212

Query: 260 IHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           +    I  +P+V T +  IN   + GD   A  +  +M   GV P+ V  + L+D    +
Sbjct: 213 MLVRKI--SPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDS 270

Query: 318 GKVEAAFEILQEAKN-----------QGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           GK++ A E+ +  +             G+   + +Y+ L+    N   + +A ELYE M 
Sbjct: 271 GKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 330

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              + P   T +++I  LC   +L +  ++   M S    PN +T++ L+    +   V+
Sbjct: 331 HRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVD 390

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLA 486
            GL L  +    G++ N + +  +I    R + K   +N                    +
Sbjct: 391 DGLELFCEMGRRGIVANAITYITLI----RGFRKVGNING-------------------S 427

Query: 487 LMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSAD 533
           L +++E I +G  P    +  +L  L           ++E L +S D
Sbjct: 428 LDIFQEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEELQMSMD 474



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 199/443 (44%), Gaps = 43/443 (9%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L ++N L+     + R+SE +DL   M +  ++    + +     +C+  + ++      
Sbjct: 50  LVTFNTLLHGLCVEDRVSEALDLFHQMCKPNVVTFTTLMNG----LCREGRVVEAVALLD 105

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKS 140
           ++V +   P   T+  ++       D+  A  +LR ++E + +K D  +Y+ +I    K 
Sbjct: 106 RMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKD 165

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+      +F EM + GI P++ TY  +I+G   +G+ ++A      M  + + PD V F
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + LI A  + G ++ A D+L EM +    V P+ +T   L+    ++G++  A E++K +
Sbjct: 226 SGLINALVKEGDLNSAQDLLQEMISS--GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAM 283

Query: 261 HK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            K   +I  T      A N                     GV PD    + LI    + G
Sbjct: 284 QKSMMDIDATH-----AFN---------------------GVEPDVQTYNILISGLINEG 317

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           K   A E+ +E  ++GI    ++YSS++          +A ++++ M S    P + T N
Sbjct: 318 KFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFN 377

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LIT  C    +   +E+  +M   G+  N ITY  L+    +  ++   L +  +    
Sbjct: 378 TLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISS 437

Query: 439 GVIPNLVMFKCII-GMCSRRYEK 460
           GV P+ +  + ++ G+ S+   K
Sbjct: 438 GVYPDTITIRNMLTGLWSKEELK 460



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 166/373 (44%), Gaps = 17/373 (4%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +FN+L+    S      A      + + G       + TL+       +V    ++FH+M
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                +PNV T+  L++G  + G+V +A      M    ++P+++ +  ++    + G  
Sbjct: 77  C----KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++L +M  E+  + PD +   A++      G+   A+ ++  +    I      Y+
Sbjct: 133 VSALNLLRKME-ELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYS 191

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             IN    +G W  A  +  +M  + + PD V  S LI+     G + +A ++LQE  + 
Sbjct: 192 CMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISS 251

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-----------KPTVSTMNALIT 382
           G+   +++ ++L+    ++   + ALE+++ M+   +           +P V T N LI+
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILIS 311

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            L +  +  +  E+  +M   G+ P+T+TYS ++    ++  ++    +          P
Sbjct: 312 GLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 371

Query: 443 NLVMFKCII-GMC 454
           N+V F  +I G C
Sbjct: 372 NIVTFNTLITGYC 384



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 9/261 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I  +++++  LI       ++  A   +G +      P  V FN L+        V  A 
Sbjct: 11  IPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEAL 70

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
           D+  +M        P+ +T   LM      G+V  A  +   + +  ++     Y   ++
Sbjct: 71  DLFHQM------CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 124

Query: 278 CCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
              + GD   A ++   M +   I PD V  SA+ID     G+   A  +  E +++GI 
Sbjct: 125 GMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIF 184

Query: 337 VGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
             I++YS ++ G CS+ K W +A  L + M   K+ P V T + LI AL     L    +
Sbjct: 185 PDIVTYSCMINGFCSSGK-WSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQD 243

Query: 396 VLSDMKSLGLCPNTITYSILL 416
           +L +M S G+CPN +T + LL
Sbjct: 244 LLQEMISSGVCPNVVTCNTLL 264



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 109/255 (42%), Gaps = 27/255 (10%)

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I   I S++ L+    +      AL  +  +  +   PT+ T N L+  LC  D++ + +
Sbjct: 11  IPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEAL 70

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           ++   M      PN +T++ L+    R+  V   + LL +  EDG+ PN + +  I+ GM
Sbjct: 71  DLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 126

Query: 454 CS-----------RRYEKARTLNEHVLSFNSGRPQIENKWT----SLALMVYREAIVAGT 498
           C            R+ E+   +   V+ +++    I+  W     + A  ++ E    G 
Sbjct: 127 CKMGDTVSALNLLRKMEELSHIKPDVVIYSA---IIDGLWKDGRHTDAQNLFIEMQDKGI 183

Query: 499 IPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGEYDPRAF 555
            P +   S ++            +RL++ +    +S D +  S L + +   G+ +  A 
Sbjct: 184 FPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLN-SAQ 242

Query: 556 SLLEEAASFGIVPCV 570
            LL+E  S G+ P V
Sbjct: 243 DLLQEMISSGVCPNV 257


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 112/467 (23%), Positives = 203/467 (43%), Gaps = 47/467 (10%)

Query: 82  RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  KL  +PTL TFN L+  +C   + SE     L L  +   K +   +TTL+    + 
Sbjct: 40  KLTKLGFHPTLVTFNTLLHGLCVEDRVSEA----LDLFHQM-CKPNVVTFTTLMNGLCRE 94

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVV 199
           G+V     +   MV  G++PN  TYG ++DG  K G    A      M    ++KPD V+
Sbjct: 95  GRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVI 154

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           ++A+I    + G    A ++  EM  +   + PD +T   ++    ++G+   A+ + + 
Sbjct: 155 YSAIIDGLWKDGRHTDAQNLFIEMQDK--GIFPDIVTYSCMINGFCSSGKWSEAQRLLQE 212

Query: 260 IHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           +    I  +P+V T +  IN   + GD   A  +  +M   GV P+ V  + L+D    +
Sbjct: 213 MLVRKI--SPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDS 270

Query: 318 GKVEAAFEILQEAKN-----------QGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           GK++ A E+ +  +             G+   + +Y+ L+    N   + +A ELYE M 
Sbjct: 271 GKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMP 330

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              + P   T +++I  LC   +L +  ++   M S    PN +T++ L+    +   V+
Sbjct: 331 HRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVD 390

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLA 486
            GL L  +    G++ N + +  +I    R + K   +N                    +
Sbjct: 391 DGLELFCEMGRRGIVANAITYITLI----RGFRKVGNING-------------------S 427

Query: 487 LMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSAD 533
           L +++E I +G  P    +  +L  L           ++E L +S D
Sbjct: 428 LDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEELQMSMD 474



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 198/446 (44%), Gaps = 42/446 (9%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L ++N L+     + R+SE +DL   M +  ++    + +     +C+  + ++      
Sbjct: 50  LVTFNTLLHGLCVEDRVSEALDLFHQMCKPNVVTFTTLMNG----LCREGRVVEAVALLD 105

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKS 140
           ++V +   P   T+  ++       D+  A  +LR ++E + +K D  +Y+ +I    K 
Sbjct: 106 RMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKD 165

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+      +F EM + GI P++ TY  +I+G   +G+ ++A      M  + + PD V F
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTF 225

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           + LI A  + G ++ A D+L EM +    V P+ +T   L+    ++G++  A E++K +
Sbjct: 226 SGLINALVKEGDLNSAQDLLQEMISS--GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAM 283

Query: 261 HK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            K   +I  T      A N                     GV PD    + LI    + G
Sbjct: 284 QKSMMDIDATH-----AFN---------------------GVEPDVQTYNILISGLINEG 317

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           K   A E+ +E  ++GI    ++YSS++          +A ++++ M S    P + T N
Sbjct: 318 KFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFN 377

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LIT  C    +   +E+  +M   G+  N ITY  L+    +  ++   L +  +    
Sbjct: 378 TLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISS 437

Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTL 464
           GV P+ +  + ++     + E  R L
Sbjct: 438 GVYPDTITIRNMLTGLWSKEELKRAL 463



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 99/478 (20%), Positives = 205/478 (42%), Gaps = 37/478 (7%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +FN+L+    S      A      + + G       + TL+       +V    ++FH+M
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                +PNV T+  L++G  + G+V +A      M    ++P+++ +  ++    + G  
Sbjct: 77  C----KPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 132

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++L +M  E+  + PD +   A++      G+   A+ ++  +    I      Y+
Sbjct: 133 VSALNLLRKME-ELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYS 191

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             IN    +G W  A  +  +M  + + PD V  S LI+     G + +A ++LQE  + 
Sbjct: 192 CMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISS 251

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-----------KPTVSTMNALIT 382
           G+   +++ ++L+    ++   + ALE+++ M+   +           +P V T N LI+
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILIS 311

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            L +  +  +  E+  +M   G+ P+T+TYS ++    ++  ++    +          P
Sbjct: 312 GLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 371

Query: 443 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV 502
           N+V F  +I      Y KA  +++ +  F                 + R  IVA  I  +
Sbjct: 372 NIVTFNTLI----TGYCKAGMVDDGLELFCE---------------MGRRGIVANAITYI 412

Query: 503 EVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEE 560
            ++        +  + DI + ++ + GV  D +   N+ + +    E   RA ++LEE
Sbjct: 413 TLIRGFRKVGNINGSLDIFQEMISS-GVYPDTITIRNMLTGLWSKEEL-KRALAMLEE 468



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 9/261 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           I  +++++  LI       ++  A   +G +      P  V FN L+        V  A 
Sbjct: 11  IPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEAL 70

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
           D+  +M        P+ +T   LM      G+V  A  +   + +  ++     Y   ++
Sbjct: 71  DLFHQM------CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 124

Query: 278 CCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
              + GD   A ++   M +   I PD V  SA+ID     G+   A  +  E +++GI 
Sbjct: 125 GMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIF 184

Query: 337 VGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
             I++YS ++ G CS+ K W +A  L + M   K+ P V T + LI AL     L    +
Sbjct: 185 PDIVTYSCMINGFCSSGK-WSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQD 243

Query: 396 VLSDMKSLGLCPNTITYSILL 416
           +L +M S G+CPN +T + LL
Sbjct: 244 LLQEMISSGVCPNVVTCNTLL 264



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/255 (22%), Positives = 109/255 (42%), Gaps = 27/255 (10%)

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I   I S++ L+    +      AL  +  +  +   PT+ T N L+  LC  D++ + +
Sbjct: 11  IPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEAL 70

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           ++   M      PN +T++ L+    R+  V   + LL +  EDG+ PN + +  I+ GM
Sbjct: 71  DLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGM 126

Query: 454 CS-----------RRYEKARTLNEHVLSFNSGRPQIENKWT----SLALMVYREAIVAGT 498
           C            R+ E+   +   V+ +++    I+  W     + A  ++ E    G 
Sbjct: 127 CKMGDTVSALNLLRKMEELSHIKPDVVIYSA---IIDGLWKDGRHTDAQNLFIEMQDKGI 183

Query: 499 IPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGEYDPRAF 555
            P +   S ++            +RL++ +    +S D +  S L + +   G+ +  A 
Sbjct: 184 FPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLN-SAQ 242

Query: 556 SLLEEAASFGIVPCV 570
            LL+E  S G+ P V
Sbjct: 243 DLLQEMISSGVCPNV 257


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 196/419 (46%), Gaps = 11/419 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N   + G++ +  +LL++M+ +G+  MD + H+        +  I EA   FK +    +
Sbjct: 7   NGFCKAGQVDQAFELLDEMKERGV-KMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECS 65

Query: 90  PTLSTFNMLMS-VCASSKDSEGA--FQVLRLVQEA--GLKADCKLYTTLITTCAKSGKVD 144
           P + T+N +++ +C +++  EG   F  +    EA  G + D   Y+T+I    K+ +VD
Sbjct: 66  PNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVD 125

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
             +E F  M   G  PNV TY +LIDG  K  +V +A+     ++ +++ P  + +NA++
Sbjct: 126 KAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVV 185

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G      ++L  M  +   ++   I   A++ A     + ++A + ++ + K  
Sbjct: 186 NGFKRQGKPSECLELLLHMKEKGFGINI--IDFNAMLHALWKNDEQEKACQFFERLLKSG 243

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            K     Y +A++   + G  + A  +  +M +  V PD +  S++ID    AG+++ A 
Sbjct: 244 KKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKAD 303

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++             +++ +L+   S  K  ++A  ++E M +    P + T N L+  +
Sbjct: 304 DVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           C  D +   +E+   MK     P+  TY+ L+    R   V+     L   + D V+PN
Sbjct: 364 CGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPN 422



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 175/393 (44%), Gaps = 39/393 (9%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +YTT+I    K+G+VD  FE+  EM   G++ +V  +  LI G  + G++ +A   +  M
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM 60

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV---HPVDPDHITIGALMKACA 245
             +   P+ + +N ++    ++  +D   ++  +M       H  +PD I+   ++ A  
Sbjct: 61  -GEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC 119

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            A +VD+A E +K +           Y+  I+   +    + A S+   +  + ++P  +
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAM 179

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           + +A+++     GK     E+L   K +G  + II +++++ A       +KA + +E +
Sbjct: 180 YYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL 239

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA------C 419
                KP V T N  +  LC   ++ +   +L +M    + P+ ITYS ++         
Sbjct: 240 LKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRM 299

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIE 479
           ++ DDV   +M+         IP+ V F  ++               H  S        E
Sbjct: 300 DKADDVFTRMMVHE------CIPHPVTFMTLL---------------HGFS--------E 330

Query: 480 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
           +K +  A  V+ + + AG IP ++  + ++ C+
Sbjct: 331 HKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 173/395 (43%), Gaps = 60/395 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           N   RQG+ SEC++LL  M+ KG    ++D + + HA + N  + +KA +   R  K   
Sbjct: 186 NGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKND-EQEKACQFFERLLKSGK 244

Query: 89  NPTLSTFNM-LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P + T+N+ +  +C + K  E A+++L  + E+ +  D   Y+++I    K+G++D   
Sbjct: 245 KPNVVTYNVAVHGLCKAGKVDE-AYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKAD 303

Query: 148 EVF----------------------------------HE-MVNAGIEPNVHTYGALIDGC 172
           +VF                                  HE MVNAG  P + TY  L+D  
Sbjct: 304 DVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
             A  V  A   Y  M+ K  +PD   +  LI    ++  VD A + L  M A+   V P
Sbjct: 364 CGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEAD--NVVP 421

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           +     AL++     G+VD A  V   +               +  C + G+ + A  V 
Sbjct: 422 NGAICHALVEVLCKQGEVDEACSVLDNV---------------VEIC-KAGEPDEAVEVI 465

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           + M  KGV PDE    A++       +V++A    ++  ++G + G+++Y+ L+G   +A
Sbjct: 466 EQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSA 525

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                A  ++E M +    P   TM  L + L D 
Sbjct: 526 DMADDAFRIFEAMVAAGFTPQAQTMRTLSSCLRDA 560



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/448 (21%), Positives = 192/448 (42%), Gaps = 31/448 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLV 87
           N L +  RI E ++L +DME++       + D + ++   + +CK+Q+ + +A+ +FK +
Sbjct: 76  NGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQR-VDKAYEYFKRM 134

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P + T++ L+         + A+ +L  ++   +      Y  ++    + GK 
Sbjct: 135 RAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKP 194

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
               E+   M   G   N+  + A++    K  +  KA   +  +     KP+ V +N  
Sbjct: 195 SECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVA 254

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +    ++G VD A+ +L EM      V PD IT  +++     AG++D+A +V+  +  +
Sbjct: 255 VHGLCKAGKVDEAYRILLEMVES--KVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVH 312

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                P  +   ++  S+      A  V++DM   G IP     + L+D    A  VE+A
Sbjct: 313 ECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESA 372

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            EI  + K +       +Y+ L+     A+   +A E  + M++  + P  +  +AL+  
Sbjct: 373 LEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEV 432

Query: 384 LCDGDQL-------------------PKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           LC   ++                    + +EV+  M   G+ P+  TY  +L +    D 
Sbjct: 433 LCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDR 492

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           V+  +    +    G  P LV +  +IG
Sbjct: 493 VDSAIAEFEKMASRGCAPGLVTYTLLIG 520


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 214/457 (46%), Gaps = 31/457 (6%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           G+  + A  + + +HS N  +     S  ID      ++G+LD+ + Y  R       + 
Sbjct: 371 GEDLDKAELLYKNMHSMNLPLNDVTYSILID---SFCKRGMLDVAESYFGRMI-----ED 422

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            I+E           T+  +N L++  C     S   F   +++ E GL+     +TTLI
Sbjct: 423 GIRE-----------TIYPYNSLINGHCKFGDLSAAEFLYTKMINE-GLEPTATTFTTLI 470

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
           +   K  +V+  F+++ EM    I P+V+T+ ALI G     ++A+A   +  M  + +K
Sbjct: 471 SGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIK 530

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEM--NAEVHPVDPDHITIGALMKACANAGQVDR 252
           P  V +N +I    ++  +D+AF++L +M  N  V    PD  T   L+    + G+V  
Sbjct: 531 PTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLV----PDTYTYRPLISGLCSTGRVSA 586

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A++    +HK N+K     Y+  ++     G    A S   +M ++G+  D V  + LID
Sbjct: 587 AKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLID 646

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
            A     ++  F +L++  +QG+    + Y+S++ A S   +++K+ E  + M + K  P
Sbjct: 647 GAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFP 706

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V T  A +  LC   ++ +   +   M +  + PN++TY   L +  ++ +++    L 
Sbjct: 707 NVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLH 766

Query: 433 SQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNE 466
            +  + G++ N   +  +I G C   R  E  + L+E
Sbjct: 767 HEMLK-GLLANTATYNILIRGFCKLGRLIEATKVLSE 802



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 196/439 (44%), Gaps = 14/439 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           + E ++ YN LI    + G +S    L   M  +GL      +       CK  + +++A
Sbjct: 424 IRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQ-VEKA 482

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F+ ++ +      P++ TF  L+    S+ +   A ++   + E  +K     Y  +I  
Sbjct: 483 FKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEG 542

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K+  +D  FE+  +M++ G+ P+ +TY  LI G    G+V+ A      +  KN+K +
Sbjct: 543 YCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLN 602

Query: 197 RVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
            + ++AL+   CGQ G +  A     EM      ++ D +    L+        + R   
Sbjct: 603 EMCYSALLHGYCGQ-GRLTEALSASCEMIQR--GINMDLVCHAVLIDGAMKQQDMKRLFG 659

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + K ++   ++    +YT  I+  S+ G ++ +    D M  +   P+ V  +A ++   
Sbjct: 660 LLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLC 719

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+++ A  + ++     IS   ++Y   + + +   N ++A +L+  M    L  T +
Sbjct: 720 KVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGLLANT-A 778

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N LI   C   +L +  +VLS+M   G+ P+ ITYS ++    R  DV   + L    
Sbjct: 779 TYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTM 838

Query: 436 KEDGVIPNLVMFKCIIGMC 454
              GV P+ V F  +I  C
Sbjct: 839 LRKGVEPDSVAFNLLIYGC 857



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 103/470 (21%), Positives = 197/470 (41%), Gaps = 66/470 (14%)

Query: 1   MQDGGKNMLQFPYP---NGKHANYAHDVSEQLHSYNRLIRQG------------------ 39
           ++DG +  + +PY    NG H  +  D+S     Y ++I +G                  
Sbjct: 420 IEDGIRETI-YPYNSLING-HCKFG-DLSAAEFLYTKMINEGLEPTATTFTTLISGYCKD 476

Query: 40  -RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
            ++ +   L  +M  K +      + A  + +C + +  + +  F ++V     PT  T+
Sbjct: 477 LQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTY 536

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFEVFH- 151
           N+++     + + + AF++L  +   GL  D   Y  LI+    +G+V A     +  H 
Sbjct: 537 NVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHK 596

Query: 152 -------------------------------EMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
                                          EM+  GI  ++  +  LIDG  K   + +
Sbjct: 597 KNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKR 656

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
            FG    M  + ++PD V++ ++I A  + G+  ++ + L  M  E     P+ +T  A 
Sbjct: 657 LFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTE--KCFPNVVTYTAF 714

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           M      G++DRA  +++ +   NI      Y   ++  ++ G+ + A  ++ +M K G+
Sbjct: 715 MNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GL 773

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
           + +    + LI      G++  A ++L E    GI    I+YS+++     + +   A+E
Sbjct: 774 LANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVE 833

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
           L++ M    ++P     N LI   C    L K  E+ +DM S GL P  I
Sbjct: 834 LWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQI 883



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 145/327 (44%), Gaps = 3/327 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  LI    K G V    EV   +   G++ +V TY  L+ G  +  Q          M 
Sbjct: 256 YNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMV 315

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
                P     + L+    + G +D A+D++ ++        P+     AL+ A      
Sbjct: 316 ELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGR--FGFLPNLFVYNALINALCKGED 373

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D+A  +YK +H  N+      Y+I I+   + G  + A S +  M + G+       ++
Sbjct: 374 LDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNS 433

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI+     G + AA  +  +  N+G+     ++++L+         +KA +LY  M   +
Sbjct: 434 LINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKE 493

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           + P+V T  ALI  LC  +++ +  ++  +M    + P  +TY++++    +  +++   
Sbjct: 494 IAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAF 553

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMCS 455
            LL     +G++P+   ++ +I G+CS
Sbjct: 554 ELLEDMLHNGLVPDTYTYRPLISGLCS 580



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/418 (22%), Positives = 174/418 (41%), Gaps = 32/418 (7%)

Query: 78  KEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVL----------RLVQEAG 122
           K A RFF  +      N T ++F +L+     +K    A  +L          + V E  
Sbjct: 77  KLALRFFNFLGLHKNMNHTTTSFAILVHALVQNKLFWPANSLLHTLLLRGSDPKFVFEKF 136

Query: 123 LKA--DCKLYTTL-----ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           L++   CK  +TL     + +  ++ +V     V   M+   + P V T  A+++G  + 
Sbjct: 137 LESHKQCKFSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRI 196

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            +    +  +    +  VKPD    +A+I +  +     RA + +  M  E +  D   +
Sbjct: 197 RKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWM--ESNRFDLSIV 254

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFACSVYDD 294
           T   L+      G V  A EV K + +  +K     Y T+ +  C +   ++    + ++
Sbjct: 255 TYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFC-RVQQFDDGICLMNE 313

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M + G +P E  +S L+D     G +++A++++ +    G    +  Y++L+ A    ++
Sbjct: 314 MVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGED 373

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             KA  LY++M S+ L     T + LI + C    L         M   G+      Y+ 
Sbjct: 374 LDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNS 433

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA----RTLNE 466
           L+    +  D+     L ++   +G+ P    F  +I G C   + EKA    R +NE
Sbjct: 434 LINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNE 491



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 90/204 (44%), Gaps = 15/204 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L + G I     L E M    +   + V +  F +    +  +KEA      +    L
Sbjct: 716 NGLCKVGEIDRAGHLFEKMLTANI-SPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGLL 774

Query: 93  S---TFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +   T+N+L+   C   +  E A +VL  + E G+  DC  Y+T+I    +SG V A  E
Sbjct: 775 ANTATYNILIRGFCKLGRLIE-ATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVE 833

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV---------V 199
           ++  M+  G+EP+   +  LI GC   G + KAF     M S+ +KP ++         V
Sbjct: 834 LWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGV 893

Query: 200 FNALITACGQSGAVDRAFDVLAEM 223
            N L+     +G VD A  +   M
Sbjct: 894 CNFLMHGGCVTGEVDTALRLYHSM 917


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 197/442 (44%), Gaps = 25/442 (5%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +LD D       +  A     C S  A+  A  F +
Sbjct: 40  VREGTLRPEEAHDLLDELQRRGTPVLDRDLNGFLAALARAPSSAACGSGPALAVAL-FNR 98

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ D  + + L+   
Sbjct: 99  AASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGF 158

Query: 138 AKSGKVDAMFEVF-HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--K 194
            ++ + D   ++  H     G  P+V +Y  L+      G+  +A     +M        
Sbjct: 159 CEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCS 218

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V +N +I    + G V++A D+  EM     P  PD +T  +++ A   A  +D+A 
Sbjct: 219 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP--PDLVTYSSVVHALCKARAMDKAE 276

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
              + +    +      Y   I   S TG W+ A  V+ +M ++ ++PD V L+ L+   
Sbjct: 277 AFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSL 336

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              GK++ A ++      +G +  + SY+ ++   +         +L++ M    + P +
Sbjct: 337 CKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVI 396

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  +   +Q
Sbjct: 397 CTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQ 456

Query: 435 AKEDGVIPNLVMFKCII-GMCS 455
             + GV+P+   + C+I G C+
Sbjct: 457 MIDQGVVPDKYAYHCLIQGFCT 478



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 197/433 (45%), Gaps = 9/433 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 336 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 394

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + TFN+L+   A+    + A  +   +++ G+K     Y T+I    + GK+D   E F
Sbjct: 395 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKF 454

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           ++M++ G+ P+ + Y  LI G    G + KA      + +  ++ D V F ++I    + 
Sbjct: 455 NQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKL 514

Query: 211 GAVDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           G V  A ++    +N  +HP   D +    LM      G++++A  V+  +    I+   
Sbjct: 515 GRVMDAQNIFDLTVNVGLHP---DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 571

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +N   + G  +   S++ +M +KG+ P  +  + +ID    AG+   A     E
Sbjct: 572 VGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 631

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI++   +YS ++      + + +A+ L++ ++++ +K  + T+N +I  +    +
Sbjct: 632 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 691

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++ + +   GL P  +TYSI++    ++  VE    + S  +  G  P+  +   
Sbjct: 692 VEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 751

Query: 450 IIGMCSRRYEKAR 462
           ++    ++ E  R
Sbjct: 752 VVRELLKKNEIVR 764



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 174/416 (41%), Gaps = 38/416 (9%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           V +P +  +N ++       D   A  + + + + G+  D   Y++++    K+  +D  
Sbjct: 216 VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKA 275

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
                +MVN G+ P+  TY  LI G +  GQ  +A   +  MR +++ PD V  N L+ +
Sbjct: 276 EAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGS 335

Query: 207 CGQSGAVDRAFDVLAEM-----NAEVHP----------------------------VDPD 233
             + G +  A DV   M     N +V                              + P 
Sbjct: 336 LCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPV 395

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T   L+KA AN G +D+A  ++  +  + +K     Y   I    + G  + A   ++
Sbjct: 396 ICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFN 455

Query: 294 DMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            M  +GV+PD+     LI  F  H G +  A E++ E  N G+ + I+ + S++      
Sbjct: 456 QMIDQGVVPDKYAYHCLIQGFCTH-GSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKL 514

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
                A  +++   ++ L P     N L+   C   ++ K + V   M S G+ PN + Y
Sbjct: 515 GRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGY 574

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
             L+    +   ++ GL L  +  + G+ P+ +++  II      +E  RT+   V
Sbjct: 575 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII---DGLFEAGRTVPAKV 627



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 35/195 (17%), Positives = 89/195 (45%), Gaps = 3/195 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N   + GRI E + L  +M +KG+     +Y+     + ++ + +    +F ++  +   
Sbjct: 579 NGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIA 638

Query: 93  ---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
               T+++++     ++  + A  + + ++   +K D     T+I    ++ +V+   ++
Sbjct: 639 MNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDL 698

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  +  +G+ P   TY  +I    K G V +A   +  M++   +PD  + N ++    +
Sbjct: 699 FASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLK 758

Query: 210 SGAVDRAFDVLAEMN 224
              + RA   L++++
Sbjct: 759 KNEIVRAGAYLSKID 773


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 176/396 (44%), Gaps = 35/396 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P++ T+++LM      +D E    +LR ++  G+K +   YT  I    ++ + D  + +
Sbjct: 193 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRI 252

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M N G +P+V T+  LI     AG+++ A   +  M+  + KPDRV +  L+   G 
Sbjct: 253 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGD 312

Query: 210 SG--------------------------------AVDRAFDVLAEMNAEVHP--VDPDHI 235
           +G                                 V R F+ L EM  E+    + P+  
Sbjct: 313 NGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEAL-EMFDEMKQKGIVPEQY 371

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           +  +L+     A +   A E++K +  +  K     + + IN   ++G+   A   Y+ M
Sbjct: 372 SYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELM 431

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             KG++PD V  +A++     +G++  A  +  E K  G+S   I+Y+ ++  CS A  +
Sbjct: 432 KSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKF 491

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +A++++  M      P V  +N+LI  L    +  +   +   +K + L P   TY+ L
Sbjct: 492 DEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTL 551

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L    R+  V+  + LL +       PNL+ +  I+
Sbjct: 552 LAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTIL 587



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 180/424 (42%), Gaps = 11/424 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH V   ++SY   IR      R  E   +L  ME +G    D + H     V      I
Sbjct: 223 AHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGC-KPDVITHTVLIQVLCDAGRI 281

Query: 78  KEA----FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A    ++  K    P   T+  L+     + DS+   ++   ++  G   +   YT +
Sbjct: 282 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 341

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    + G+V    E+F EM   GI P  ++Y +LI G  KA +   A   +  M     
Sbjct: 342 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 401

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KP+       I   G+SG   +A      M ++   + PD +   A++   A +G++  A
Sbjct: 402 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSK--GIVPDVVAGNAVLFGLAKSGRLGMA 459

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           + V+  +    +      YT+ I CCS+   ++ A  ++ DM +   +PD + +++LID 
Sbjct: 460 KRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDT 519

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+ + A+ I  + K   +     +Y++L+         ++ + L E M      P 
Sbjct: 520 LYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPN 579

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + T N ++  LC    +   +++L  M + G  P+  +Y+ ++    +++       +  
Sbjct: 580 LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFC 639

Query: 434 QAKE 437
           Q K+
Sbjct: 640 QMKK 643



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 110/466 (23%), Positives = 191/466 (40%), Gaps = 59/466 (12%)

Query: 26  SEQLHSYNRLIRQGRISE----CIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEA 80
           +E L  +    R+ R++     C  +LE M   G + DM     A  F+V + Q      
Sbjct: 71  AEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDM-----AEVFDVMQRQ------ 119

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                 +    + TF  +            A   L +++EAG+  +   Y  L+    KS
Sbjct: 120 ------IVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKS 173

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G      EV+  M+  G+ P+V TY  L+    K   V         M +  VKP+   +
Sbjct: 174 GFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSY 233

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
              I   GQ+   D A+ +LA+M  E     PD IT   L++   +AG++  A++V+  +
Sbjct: 234 TICIRVLGQAKRFDEAYRILAKMENE--GCKPDVITHTVLIQVLCDAGRISDAKDVFWKM 291

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            K + K     Y   ++     GD +    +++ M   G   + V  +A+ID     G+V
Sbjct: 292 KKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRV 351

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH---------------- 364
             A E+  E K +GI     SY+SL+     A  +  ALEL++H                
Sbjct: 352 FEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLF 411

Query: 365 -------------------MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
                              MKS  + P V   NA++  L    +L     V  ++K++G+
Sbjct: 412 INYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGV 471

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            P+TITY++++  C +    +  + +     E+  +P+++    +I
Sbjct: 472 SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLI 517



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/504 (21%), Positives = 205/504 (40%), Gaps = 27/504 (5%)

Query: 18   HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
            H+NY  +    L +YN ++    + G +++ +D+L  M  KG +     Y+   + + K 
Sbjct: 573  HSNYPPN----LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 628

Query: 74   QKAIKEAFRFF---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKL 129
            ++   EAF  F   K V  P  +T   ++         + A  +++    + G K D   
Sbjct: 629  ER-YNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSS 687

Query: 130  YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
              +L+    K   ++   E    + ++GI  +      LI    K  +  +A       +
Sbjct: 688  CHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFK 747

Query: 190  SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            S  V     ++N+LI        +D A  + AEM        PD  T   L+ A   + +
Sbjct: 748  SFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKE--LGCGPDEFTYNLLLDAMGKSMR 805

Query: 250  VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
            ++   +V + +H+   + T   Y   I+   ++   E A  +Y ++  +G  P       
Sbjct: 806  IEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGP 865

Query: 310  LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
            L+D    AG++E A  +  E    G       Y+ L+     A N +K   L++ M    
Sbjct: 866  LLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQG 925

Query: 370  LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
            + P + +   +I  LC   QL   +     +  +GL P+ ITY++L+    +   +E  +
Sbjct: 926  INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAV 985

Query: 430  MLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE--------HVLSFNSG-RPQ 477
             L ++ ++ G++PNL  +  +I   G   +  E  +   E        +V ++N+  R  
Sbjct: 986  SLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGY 1045

Query: 478  IENKWTSLALMVYREAIVAGTIPT 501
              +  T  A   Y   IV G +P 
Sbjct: 1046 SVSGSTDSAYAAYGRMIVGGCLPN 1069



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 120/564 (21%), Positives = 227/564 (40%), Gaps = 45/564 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVPN---P 90
           L + GR+     +  +++  G+   D + +      C       EA + F+ ++ N   P
Sbjct: 450 LAKSGRLGMAKRVFHELKAMGV-SPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 508

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            +   N L+     +   + A+++   ++E  L+     Y TL+    + GKV  +  + 
Sbjct: 509 DVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 568

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM ++   PN+ TY  ++D   K G V  A      M +K   PD   +N +I    + 
Sbjct: 569 EEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 628

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
              + AF +  +M      + PD+ T+  ++ +    G +   +E   +I  Y ++  P 
Sbjct: 629 ERYNEAFSIFCQMK---KVLIPDYATLCTILPSFVKIGLM---KEALHIIKDYFLQ--PG 680

Query: 271 VYTIAINCCS------QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             T   +C S      +    E +    + +   G+  D+ FL  LI       K   A 
Sbjct: 681 SKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAH 740

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E++++ K+ G+S+    Y+SL+    +      A  L+  MK +   P   T N L+ A+
Sbjct: 741 ELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAM 800

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
               ++ + ++V  +M   G     +TY+ ++    +   +E  + L       G  P  
Sbjct: 801 GKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTP 860

Query: 445 VMFKCIIG--MCSRRYEKARTLNEHVLSFN------------SGRPQIENKWTSLALMVY 490
             +  ++   + + R E A  L   +L +             +G     N  T     ++
Sbjct: 861 CTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGN--TEKVCHLF 918

Query: 491 REAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDG 546
           ++ +  G  P ++  + ++  L    QL        +L+E +G+  D L   NL  LIDG
Sbjct: 919 QDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLE-MGLEPD-LITYNL--LIDG 974

Query: 547 FGEYD--PRAFSLLEEAASFGIVP 568
            G+      A SL  E    GIVP
Sbjct: 975 LGKSKRLEEAVSLFNEMQKKGIVP 998



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 135/334 (40%), Gaps = 2/334 (0%)

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+V  M EVF  M    ++ NV T+ A+  G    G +  A  A  +M+   +  +   +
Sbjct: 104 GRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTY 163

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N L+    +SG    A +V   M   V  V P   T   LM A      V+    + + +
Sbjct: 164 NGLVYFLVKSGFDREALEVYRVM--MVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 221

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             + +K     YTI I    Q   ++ A  +   M  +G  PD +  + LI     AG++
Sbjct: 222 EAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRI 281

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A ++  + K        ++Y +L+    +  + Q  +E++  MK+      V    A+
Sbjct: 282 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 341

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I ALC   ++ + +E+  +MK  G+ P   +Y+ L+    + D     L L       G 
Sbjct: 342 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 401

Query: 441 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
            PN       I    +  E  + +  + L  + G
Sbjct: 402 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG 435


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 196/442 (44%), Gaps = 25/442 (5%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +L+ D       +  A     C+S  A+  A  F +
Sbjct: 38  VREGTLRPEEAHDLLDELQRRGTPVLERDLNGFLAAIARAPSSAACRSGPALAVAL-FNR 96

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ D  +   L+   
Sbjct: 97  AASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGF 156

Query: 138 AKSGKVDAMFEVF-HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--K 194
            ++ + D   ++  H     G  P+V +Y  L+      G+  +A     +M        
Sbjct: 157 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS 216

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V +N +I    + G V++A D+  EM     P  PD +T  +++ A   A  +D+A 
Sbjct: 217 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP--PDFVTYSSVVHALCKARAMDKAE 274

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
              + +    +      Y   I   S TG W+ A  V+ +M ++ ++PD V  + L+   
Sbjct: 275 AFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSL 334

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              GK++ A ++      +G +  + SY+ ++   +         +L++ M    + P +
Sbjct: 335 CKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVI 394

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI A  +   L K M + ++M+  G+ PN +TY+ ++ A  R   ++  +   +Q
Sbjct: 395 CTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQ 454

Query: 435 AKEDGVIPNLVMFKCII-GMCS 455
             + GV P+   + C+I G C+
Sbjct: 455 MIDQGVAPDKYAYHCLIQGFCT 476



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 179/417 (42%), Gaps = 40/417 (9%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           V +P +  +N ++       D   A  + + + + G+  D   Y++++    K+  +D  
Sbjct: 214 VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKA 273

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
                +MVN G+ PN  TY  LI G +  GQ  +A   +  MR +++ PD V FN L+ +
Sbjct: 274 EAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGS 333

Query: 207 CGQSGAVDRAFDVLAEM-----NAEVHP----------------------------VDPD 233
             + G +  A DV   M     N +V                              + P 
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPV 393

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T   L+KA AN G +D+A  ++  +  + +K     YT  I    + G  + A   ++
Sbjct: 394 ICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFN 453

Query: 294 DMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            M  +GV PD+     LI  F  H G +  A E++ E  N G+ + I+ +SS++      
Sbjct: 454 QMIDQGVAPDKYAYHCLIQGFCTH-GSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKL 512

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
                A  +++   ++ L PT    + L+   C   ++ K + V   M S G+ PN + Y
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVY 572

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHV 468
             L+    +   ++ GL L  +  + G+ P+ +++  II G+    +E  RT+   V
Sbjct: 573 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL----FEAGRTVPAKV 625



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 200/433 (46%), Gaps = 9/433 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + TFN+L+   A+    + A  +   +++ G+K +   YTT+I    + GK+D   E F
Sbjct: 393 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKF 452

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           ++M++ G+ P+ + Y  LI G    G + KA      + +  +  D V+F+++I    + 
Sbjct: 453 NQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKL 512

Query: 211 GAVDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           G V  A ++    +N  +HP     +    LM      G++++A  V+  +    I+   
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPT---AVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPND 569

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   +N   + G  +   S++ +M +KG+ P  +  + +ID    AG+   A     E
Sbjct: 570 VVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 629

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI++   +YS ++      + + +A+ L++ ++++ +K  + T+N +I  +    +
Sbjct: 630 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 689

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++ + +   GL P  +TYSI++    ++  VE    + S  +  G  P+  +   
Sbjct: 690 VEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 749

Query: 450 IIGMCSRRYEKAR 462
           ++    ++ E  R
Sbjct: 750 VVRELLKKNEIVR 762



 Score = 45.4 bits (106), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 39/213 (18%), Positives = 98/213 (46%), Gaps = 5/213 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL---STF 95
           GRI E + L  +M +KG+     +Y+     + ++ + +    +F ++  +       T+
Sbjct: 583 GRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTY 642

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           ++++     ++  + A  + + ++   +K D     T+I    ++ +V+   ++F  +  
Sbjct: 643 SIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISR 702

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           +G+ P V TY  +I    K G V +A   +  M++   +PD  + N ++    +   + R
Sbjct: 703 SGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVR 762

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           A   L++++     +  +H+T   L+   ++ G
Sbjct: 763 AGAYLSKIDERNFSL--EHLTTMLLVDLFSSKG 793


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 115/503 (22%), Positives = 213/503 (42%), Gaps = 64/503 (12%)

Query: 8   MLQFPYP------NGKHANYAH--DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDM 59
           ML  P P      N  H+   H   + E L ++NR++ +      +D       + L  +
Sbjct: 1   MLSLPPPFLSSSHNTFHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDF-----NRLLTSI 55

Query: 60  DKV-YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            K  +H+   ++ +   +          +P P + T  ++++        + AF  L  +
Sbjct: 56  AKTKHHSTLLSLSRQMDSFG--------IP-PDVYTLAIVINSLCHLNRVDFAFSALAKI 106

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
            + G + D   +TTLI      GK+     +F +M+  G +PNV TYG LI+G  K  QV
Sbjct: 107 LKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQV 166

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALI---------------------------------- 204
            +AF  +  M +K + P+ V +N+LI                                  
Sbjct: 167 TEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 226

Query: 205 -TACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVY-KMIH 261
             A  + G V  A DV+  M   +H  V+P+ +T  ALM       +VD A +V+  M+H
Sbjct: 227 VDALCKEGMVAEAHDVVDMM---IHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVH 283

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K  +      Y   IN   +    + A  ++++M+++ + P+ V  + LI    H G+++
Sbjct: 284 KDCVANVIS-YNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQ 342

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +  E   +G    +++Y +L       ++  KA+ L + ++     P +     ++
Sbjct: 343 DAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTIL 402

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             +C   +L    ++ S++ S GL PN  TY+I++    ++  +     L S+  ++G  
Sbjct: 403 DGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCS 462

Query: 442 PNLVMFKCIIGMCSRRYEKARTL 464
           PN   +  I     R  E  RT+
Sbjct: 463 PNDCTYNLITRGFLRNNEALRTI 485



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 186/425 (43%), Gaps = 12/425 (2%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           +H++  +     +A+    R     P P+   FN L++  A +K       + R +   G
Sbjct: 16  FHSKPLHFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFG 75

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           +  D      +I +     +VD  F    +++  G +P+  T+  LI G    G++ +A 
Sbjct: 76  IPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEAL 135

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
             +  M  +  +P+ V +  LI    +   V  AF++ +EM  +   + P+ +T  +L+ 
Sbjct: 136 HLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITK--GISPNIVTYNSLIH 193

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGV 300
                 +      +  M    + K  P+V+T+   ++   + G    A  V D M  +GV
Sbjct: 194 GLCKLCEWKHVTTL--MNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGV 251

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            P+ V  +AL+D      +V+ A ++     ++     +ISY++L+      ++  KA+ 
Sbjct: 252 EPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMY 311

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           L+E M   +L P   T N LI  LC   +L   + +  +M + G  P+ +TY  L     
Sbjct: 312 LFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLC 371

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI 478
           +   ++  + LL   +     P++ ++  I+ GMC +   E AR L  + LS    +P  
Sbjct: 372 KNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSN-LSSKGLQP-- 428

Query: 479 ENKWT 483
            N WT
Sbjct: 429 -NVWT 432



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 162/383 (42%), Gaps = 18/383 (4%)

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+    R   + P P+   F  L++  A  K       +   +   G+  D      LI 
Sbjct: 565 ALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILIN 624

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
           +     ++   F V  +++  G +P+V TYG L++G  K             M +K + P
Sbjct: 625 SFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK-------------MITKGISP 671

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           D   +N+LI A            +L EM N+++ P   + +    ++ A    G +  A 
Sbjct: 672 DIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMP---NVVVFSTVVDALCKEGMIAIAH 728

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           +V  M+ K  ++     YT  ++      + + A  V+D M  KG +P+    + LI+  
Sbjct: 729 DVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGY 788

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               +++ A  +L++   QG+    ++Y++L+    +    Q A+ L+  M +    P +
Sbjct: 789 CQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDL 848

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T   L+  LC    L + M +L  ++   L  + + Y+I +    R  ++E    L S 
Sbjct: 849 VTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSN 908

Query: 435 AKEDGVIPNLVMFKCII-GMCSR 456
               G+ P++  +  +I G+C R
Sbjct: 909 LSSKGLQPDVRTYNIMIHGLCKR 931



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 94/498 (18%), Positives = 187/498 (37%), Gaps = 70/498 (14%)

Query: 19  ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           +N+  D+       + + R G + +  DL  ++  KGL      Y+     +CK Q  + 
Sbjct: 389 SNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCK-QGLLA 447

Query: 79  EAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA + F  +     +P   T+N++      + ++    ++L  +   G   D    T L+
Sbjct: 448 EASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLV 507

Query: 135 TTCAKSG----------------------------------------------KVDAMFE 148
              +  G                                               +D    
Sbjct: 508 GMLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALS 567

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F+ M++    P+   +  L+   AK    +        M S  + PD    N LI +  
Sbjct: 568 SFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFC 627

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
               +  AF VLA++        PD +T G LM                KMI K     +
Sbjct: 628 HLRRLGYAFSVLAKLLKL--GFQPDVVTYGTLMNGLC------------KMITK---GIS 670

Query: 269 PEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+++T    I+      +W+   ++ ++M    ++P+ V  S ++D     G +  A ++
Sbjct: 671 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV 730

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +     +G+   +++Y++LM          +A+++++ M      P V + N LI   C 
Sbjct: 731 VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ 790

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             ++ K M +L  M   GL  +T+TY+ L+        ++  + L  +    G IP+LV 
Sbjct: 791 IQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVT 850

Query: 447 FKCIIGMCSRRYEKARTL 464
           ++ ++    + +  A  +
Sbjct: 851 YRILLDYLCKNHHLAEAM 868



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/399 (21%), Positives = 161/399 (40%), Gaps = 46/399 (11%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++  LIR    +G+I E + L + M  +G       Y      +CK ++ + EAF  F  
Sbjct: 117 TFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQ-VTEAFNIFSE 175

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P + T+N L+       + +    ++  + ++ +  D     T++    K G 
Sbjct: 176 MITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGM 235

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           V    +V   M++ G+EPNV TY AL+DG     +V  A   +  M  K+   + + +N 
Sbjct: 236 VAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNT 295

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV------------ 250
           LI    +  +VD+A  +  EM+ +   + P+ +T   L+    + G++            
Sbjct: 296 LINGYCKIQSVDKAMYLFEEMSRQ--ELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVA 353

Query: 251 -----------------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
                                  D+A  + K I   N     ++YT  ++   + G+ E 
Sbjct: 354 RGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELED 413

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  ++ +++ KG+ P+    + +I      G +  A ++  E    G S    +Y+ +  
Sbjct: 414 ARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITR 473

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
                    + +EL E M +      VST   L+  L D
Sbjct: 474 GFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSD 512



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 155/384 (40%), Gaps = 39/384 (10%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + + L S+NR++        +D       K L  + K+ H   ++   S     ++F   
Sbjct: 562 LDDALSSFNRMLHMHPPPSTVDF-----TKLLTSIAKMKH---YSTVLSLSTQMDSFG-- 611

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SG 141
             +P P + T N+L++     +    AF VL  + + G + D   Y TL+    K    G
Sbjct: 612 --IP-PDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKG 668

Query: 142 KVDAMFE-------------------VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
               +F                    + +EMVN+ I PNV  +  ++D   K G +A A 
Sbjct: 669 ISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAH 728

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALM 241
               +M  + V+PD V + AL+        +D A  V   M   VH    P+  +   L+
Sbjct: 729 DVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTM---VHKGCVPNVRSYNILI 785

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
                  ++D+A  + + +    +      Y   I+     G  + A +++ +M   G I
Sbjct: 786 NGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQI 845

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD V    L+D+      +  A  +L+  +   +   I+ Y+  +     A   + A +L
Sbjct: 846 PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDL 905

Query: 362 YEHMKSIKLKPTVSTMNALITALC 385
           + ++ S  L+P V T N +I  LC
Sbjct: 906 FSNLSSKGLQPDVRTYNIMIHGLC 929



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 103/529 (19%), Positives = 205/529 (38%), Gaps = 68/529 (12%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      GR+ + I L  +M  +G +     Y      +CK+ + + +A    K 
Sbjct: 327 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKN-RHLDKAMALLKA 385

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P +  +  ++     + + E A  +   +   GL+ +   Y  +I    K G 
Sbjct: 386 IEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGL 445

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +    ++F EM   G  PN  TY  +  G  +  +  +       M ++    D      
Sbjct: 446 LAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTL 505

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA---------NAGQVDRA 253
           L+      G       +L + ++   P      ++  L  + +         +   +D A
Sbjct: 506 LVGMLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDA 565

Query: 254 REVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
              + +M+H +    T + +T  +   ++   +    S+   M   G+ PD   L+ LI+
Sbjct: 566 LSSFNRMLHMHPPPSTVD-FTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILIN 624

Query: 313 FAGHAGKVEAAFEILQ----------------------EAKNQGISVGIISYSSLMGACS 350
              H  ++  AF +L                       +   +GIS  I +Y+SL+ A  
Sbjct: 625 SFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIHALC 684

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
           N   W+    L   M + K+ P V   + ++ ALC    +    +V+  M   G+ P+ +
Sbjct: 685 NLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVV 744

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHV 468
           TY+ L+     + +++  + +       G +PN+  +  +I G C  +R +KA  L E +
Sbjct: 745 TYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQM 804

Query: 469 ---------LSFNS--------GRPQIENKWTSLALMVYREAIVAGTIP 500
                    +++N+        GR Q        A+ ++ E + +G IP
Sbjct: 805 SLQGLIADTVTYNTLIHGLCHVGRLQ-------HAIALFHEMVASGQIP 846


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 2/325 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ML++      D   AF +   +  +GL+ D  +Y  LI    K G +D    +  +M
Sbjct: 480 TYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKM 539

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               ++P+   +  +I+G A AG +  A     +MR     P  + +NALI    +   V
Sbjct: 540 QKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKV 599

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            RA  VL +M+  +  + P+  T   +M+  A +G + +A E +  I +  +K    +Y 
Sbjct: 600 QRAVSVLDKMS--IAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYE 657

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++++ K  
Sbjct: 658 TLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED 717

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+   I +Y+S + AC  A + Q+A ++ E M  + LKP V T   LI          + 
Sbjct: 718 GVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRA 777

Query: 394 MEVLSDMKSLGLCPNTITYSILLVA 418
           ++   +MK  GL P+  +Y  L+ +
Sbjct: 778 LKCFEEMKLAGLKPDEASYHCLVTS 802



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 2/343 (0%)

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           V   ++E G K     Y  L+    K GKV     +  EM + GI+ N  TY  LI+G  
Sbjct: 430 VFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFI 489

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
                A AF  +  M    ++PDR ++N LI A  + G +DRA  +L +M  E   + P 
Sbjct: 490 HLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKER--MQPS 547

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
           +     +++  A AG +  A +   ++ +     T   Y   I+   +    + A SV D
Sbjct: 548 NRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLD 607

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M+  G+ P+E   + ++     +G +  AFE   + K  G+ + +  Y +L+ AC  + 
Sbjct: 608 KMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSG 667

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             Q AL +   M   K+       N LI        + +  +++  MK  G+ PN  TY+
Sbjct: 668 RMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYT 727

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             + AC +  D++    ++ +  + G+ PN+  +  +I   +R
Sbjct: 728 SYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 770



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 165/370 (44%), Gaps = 8/370 (2%)

Query: 91  TLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           T+ T+++L+S  A   DS      E A +++R ++E G+ A   +Y +++         +
Sbjct: 366 TIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNEN 425

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               VF  +   G +P++ +YG L++   K G+VAKA      M S  +K +   ++ LI
Sbjct: 426 KCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLI 485

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                      AF +  EM      + PD      L++A    G +DRA  + + + K  
Sbjct: 486 NGFIHLHDFANAFAIFEEMLRS--GLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKER 543

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           ++ +   +   I   +  GD + A    D M + G +P  +  +ALI       KV+ A 
Sbjct: 544 MQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAV 603

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +L +    GI+    +Y+ +M   + + +  KA E +  +K   LK  V     L+ A 
Sbjct: 604 SVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 663

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++   + V  +M    +  NT  Y+IL+    R+ DV     L+ Q KEDGV PN+
Sbjct: 664 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNI 723

Query: 445 VMFKCIIGMC 454
             +   I  C
Sbjct: 724 HTYTSYINAC 733



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/400 (21%), Positives = 175/400 (43%), Gaps = 17/400 (4%)

Query: 67  FFNVCKSQKAIKE---AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           +F +CK    + +    F F KL+  P+   F +++   A   D   A      ++  G+
Sbjct: 269 YFPLCKQSLDVLDLTYPFLFKKLLHEPSRREFGLMIVYYAKRGDKHHARATFENMRARGI 328

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK------AGQ 177
           + +  ++T+L+   A +  +        EM + G+E  + TY  LI G AK      +G 
Sbjct: 329 EPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSHQSGN 388

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
           + +A      M    +     V+++++   T           F+ L E         P  
Sbjct: 389 MERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECG-----FKPSI 443

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           I+ G L+      G+V +A  + K +    IK   + Y++ IN      D+  A +++++
Sbjct: 444 ISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEE 503

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M + G+ PD    + LI+     G ++ A  IL++ + + +     ++  ++   + A +
Sbjct: 504 MLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGD 563

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            + AL+  + M+     PTV T NALI  L    ++ + + VL  M   G+ PN  TY+I
Sbjct: 564 MKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTI 623

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           ++       D+       ++ KE G+  ++ +++ ++  C
Sbjct: 624 IMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 663



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 141/341 (41%), Gaps = 40/341 (11%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           + E+M R GL     +Y+      CK     +AI    +  K    P+   F  ++   A
Sbjct: 500 IFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYA 559

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
            + D + A   L L++ +G       Y  LI    +  KV     V  +M  AGI PN H
Sbjct: 560 VAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEH 619

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           TY  ++ G A +G + KAF  +  ++   +K D  ++  L+ AC +SG +  A  V  EM
Sbjct: 620 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 679

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
           + +  P +        L+   A  G V  A ++ K + +  +      YT  IN C + G
Sbjct: 680 SFQKIPRNT--FIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAG 737

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           D + A  V ++M   G+ P+                                   + +Y+
Sbjct: 738 DMQRAEKVIEEMVDVGLKPN-----------------------------------VKTYT 762

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +L+   +      +AL+ +E MK   LKP  ++ + L+T+L
Sbjct: 763 TLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSL 803



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 107/238 (44%), Gaps = 13/238 (5%)

Query: 27  EQLHSYNRLIRQ--------GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           E++   NR  R         G +   +D L+ M R G +     Y+A    + +  K  +
Sbjct: 542 ERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQR 601

Query: 79  EAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
                 K+      P   T+ ++M   A+S D   AF+    ++E+GLK D  +Y TL+ 
Sbjct: 602 AVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 661

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
            C KSG++ +   V  EM    I  N   Y  LIDG A+ G V +A      M+   V P
Sbjct: 662 ACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPP 721

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           +   + + I AC ++G + RA  V+ EM  +V  + P+  T   L+K  A     DRA
Sbjct: 722 NIHTYTSYINACCKAGDMQRAEKVIEEM-VDVG-LKPNVKTYTTLIKGWARVSLPDRA 777



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 138/313 (44%), Gaps = 8/313 (2%)

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           EP+   +G +I   AK G    A   +  MR++ ++P+  VF +L+ A   +  +  A  
Sbjct: 294 EPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALS 353

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACA------NAGQVDRAREVYKMIHKYNIKGTPEVY 272
            + EM +E   ++   +T   L+   A       +G ++RA E+ + + +  I    +VY
Sbjct: 354 CVEEMKSE--GLELTIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVY 411

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              ++  +   +      V++ + + G  P  +    L++     GKV  A  I +E ++
Sbjct: 412 HSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMES 471

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            GI     +YS L+    +  ++  A  ++E M    L+P  +  N LI A C    + +
Sbjct: 472 CGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDR 531

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            + +L  M+   + P+   +  ++       D++  L  L   +  G +P ++ +  +I 
Sbjct: 532 AICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIH 591

Query: 453 MCSRRYEKARTLN 465
              R+++  R ++
Sbjct: 592 GLVRKHKVQRAVS 604



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VP P + T+   ++ C  + D + A +V+  + + GLK + K YTTLI   A+    D  
Sbjct: 719 VP-PNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRA 777

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            + F EM  AG++P+  +Y  L+        V +     GI+
Sbjct: 778 LKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGII 819


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/436 (22%), Positives = 202/436 (46%), Gaps = 11/436 (2%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D +  L +YN LI    R G++    +L + M++ GL    +  +     +CKSQK + E
Sbjct: 372 DAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK-LDE 430

Query: 80  AFRFFKL----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A   F+     V  P   TF  L+         + A+++   + ++  + +  +YT+LI 
Sbjct: 431 ACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIK 490

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
                G+ +   +++ +MVN    P++      +D   KAG+  K    +  ++S+   P
Sbjct: 491 NFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVP 550

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D   ++ LI    ++G  +  +++   M  +   +D     I  ++      G+V++A +
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNI--VIDGFCKCGKVNKAYQ 608

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + + +     + T   Y   I+  ++    + A  ++++   K +  + V  S+LID  G
Sbjct: 609 LLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G+++ A+ IL+E   +G++  + +++SL+ A   A+   +AL  ++ MK +K  P   
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQV 728

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T   LI  LC   +  K      +M+  G+ P+TI+Y+ ++    +  ++     L  + 
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788

Query: 436 KEDGVIPNLVMFKCII 451
           K +G +P+   +  +I
Sbjct: 789 KANGGVPDSACYNAMI 804



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 186/424 (43%), Gaps = 28/424 (6%)

Query: 90  PTLST-FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P+++T   M++S   ++K  EG F V++ +++   +     YTTLI   +     D M  
Sbjct: 131 PSVNTCIEMVLSCVKANKLREG-FDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLT 189

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F +M   G EP VH +  LI G AK G+V  A      M+S ++  D V++N  I + G
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G VD A+    E+  E + + PD +T  +++     A ++D A E+++ + K      
Sbjct: 250 KVGKVDMAWKFFHEI--EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPC 307

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I      G ++ A S+ +    KG IP  +  + ++      GKV+ A  + +
Sbjct: 308 TYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFE 367

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E K    +  + +Y+ L+     A     A EL + M+   L P V T+N ++  LC   
Sbjct: 368 EMKKDA-APNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQ 426

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L +   +   M      P+ IT+  L+    +   V+    +  +  +     N +++ 
Sbjct: 427 KLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYT 486

Query: 449 CIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 508
            +I                   FN GR +  +K       +Y++ +     P +++++  
Sbjct: 487 SLIKN----------------FFNHGRKEDGHK-------IYKDMVNQNCSPDLQLLNTY 523

Query: 509 LGCL 512
           + C+
Sbjct: 524 MDCM 527



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 167/365 (45%), Gaps = 39/365 (10%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A+ E  +  + VP+    ++++L+     +  +   +++   ++E G   D + Y  +I
Sbjct: 537 RAMFEEIKSRRFVPDA--RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI 594

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K GKV+  +++  EM   G EP V TYG++IDG AK  ++ +A+  +   +SK ++
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
            + V++++LI   G+ G +D A+ +L E+  +   + P+  T  +L+ A   A +++ A 
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQK--GLTPNVYTWNSLLDALVKAEEINEAL 712

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
             ++ +                         E  C+           P++V    LI+  
Sbjct: 713 VCFQSMK------------------------ELKCT-----------PNQVTYGILINGL 737

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               K   AF   QE + QG+    ISY++++   + A N  +A  L++  K+    P  
Sbjct: 738 CKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDS 797

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           +  NA+I  L +G++      +  + +  GL  +  T  +LL    + D +E   ++ + 
Sbjct: 798 ACYNAMIEGLSNGNRAMDAFSLFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQAAIVGAV 857

Query: 435 AKEDG 439
            +E G
Sbjct: 858 LRETG 862


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 105/472 (22%), Positives = 207/472 (43%), Gaps = 49/472 (10%)

Query: 29  LHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRF 83
           +++YN +I      G+ +E   LLE  +RKG +     Y+      C  +K  ++EA R 
Sbjct: 342 VYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCIL--TCLGRKGKVEEALRI 399

Query: 84  F---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               K+   P L+++N+L+ +   + + E A +V   ++EAGL  +      +I    K+
Sbjct: 400 LEAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKA 459

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            ++D    +F  + +    P+  T+ +LIDG  + G+V  A+  Y  M      P+ VV+
Sbjct: 460 QRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVY 519

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAR----- 254
            +LI    + G  +    +  EM   +H    PD + +   M     AG++++ R     
Sbjct: 520 TSLIRNFFKCGRKEDGHKIYKEM---MHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEE 576

Query: 255 ---------------------------EVYKMIHKYNIKG---TPEVYTIAINCCSQTGD 284
                                      + YK+ ++   +G       Y I I+   ++G 
Sbjct: 577 IKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGK 636

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
              A  + ++M  KG+ P  V   ++ID      +++ A+ + +EAK++ + + ++ YSS
Sbjct: 637 VNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSS 696

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L+          +A  + E +    L P   T N L+ AL   +++ + +    +MK+L 
Sbjct: 697 LIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLK 756

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             PN +TYSI++    +        +   + ++ G+ PN + +  +I   +R
Sbjct: 757 CPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLAR 808



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 188/418 (44%), Gaps = 10/418 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G++        +++ +GL+  D  + +    +CK+++ + EA   F+ + +    P +  
Sbjct: 286 GKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAER-VDEAVELFEELDSNKSVPCVYA 344

Query: 95  FN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +N M+M   +  K +E A+ +L   +  G       Y  ++T   + GKV+    +   M
Sbjct: 345 YNTMIMGYGSVGKFNE-AYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM 403

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                 PN+ +Y  LID   KAG++  A      M+   + P+ +  N +I    ++  +
Sbjct: 404 -KMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRL 462

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A  +   ++ +V    PD +T  +L+      G+V+ A  +Y+ +          VYT
Sbjct: 463 DEACSIFLGLDHKV--CTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYT 520

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I    + G  E    +Y +M  +G  PD + L+  +D    AG++E    + +E K Q
Sbjct: 521 SLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQ 580

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G++  + SYS L+         +   +L+  MK   L       N +I   C   ++ K 
Sbjct: 581 GLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKA 640

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            ++L +MK+ GL P  +TY  ++    + D ++   ML  +AK   V  N+V++  +I
Sbjct: 641 YQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLI 698



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 199/435 (45%), Gaps = 9/435 (2%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D +  L SYN LI    + G +   + + + M+  GL       +     +CK+Q+  + 
Sbjct: 406 DAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEA 465

Query: 80  AFRFFKL---VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F  L   V  P   TF  L+           A+ +   + ++G   +  +YT+LI  
Sbjct: 466 CSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRN 525

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G+ +   +++ EM++ G  P++      +D   KAG++ K    +  ++++ + PD
Sbjct: 526 FFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPD 585

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
              ++ LI    + G     + +  EM  +   +D     I  ++     +G+V++A ++
Sbjct: 586 VRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNI--VIDGFCKSGKVNKAYQL 643

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            + +    ++ T   Y   I+  ++    + A  ++++   K V  + V  S+LID  G 
Sbjct: 644 LEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGK 703

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G+++ A+ IL+E   +G++    +++ L+ A   A+   +AL  +++MK++K  P   T
Sbjct: 704 VGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVT 763

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            + ++  LC   +  K      +M+  GL PNTITY+ ++    R  +V     L  + K
Sbjct: 764 YSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFK 823

Query: 437 EDGVIPNLVMFKCII 451
             G IP+   +  +I
Sbjct: 824 SSGGIPDSACYNAMI 838



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 137/578 (23%), Positives = 240/578 (41%), Gaps = 80/578 (13%)

Query: 26  SEQLHS---YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           ++QLHS   YN L+    R   +     +LE+M   G    +        +  KS+K ++
Sbjct: 126 TKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRK-LR 184

Query: 79  EAF------RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           EAF      R FK    P  S +  L+   +++ +++    +LR +QE G +    L+TT
Sbjct: 185 EAFGVIETMRKFKF--RPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTT 242

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           LI   A+ G+VDA   +  EM +     ++  Y   ID   K G+V  A+  +  ++S+ 
Sbjct: 243 LICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQG 302

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + PD V F ++I    ++  VD A ++  E+++                           
Sbjct: 303 LVPDDVTFTSMIGVLCKAERVDEAVELFEELDSN-------------------------- 336

Query: 253 AREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
                        K  P V  Y   I      G +  A S+ +   +KG IP  +  + +
Sbjct: 337 -------------KSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCI 383

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           +   G  GKVE A  IL EA     +  + SY+ L+     A   + AL++ + MK   L
Sbjct: 384 LTCLGRKGKVEEALRIL-EAMKMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGL 442

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P + T+N +I  LC   +L +   +   +      P+++T+  L+    R   V    M
Sbjct: 443 FPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYM 502

Query: 431 LLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 487
           L  +  + G  PN V++  +I     C R+ +  +   E +    S    + N +     
Sbjct: 503 LYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVF 562

Query: 488 ---------MVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRERLVE--NLGVSADAL 535
                     ++ E    G  P V   S ++ G ++  ++ D  +   E    G+  D  
Sbjct: 563 KAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDT- 621

Query: 536 KRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVPCV 570
           +  N+  +IDGF   G+ + +A+ LLEE  + G+ P V
Sbjct: 622 RAYNI--VIDGFCKSGKVN-KAYQLLEEMKTKGLQPTV 656



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 159/352 (45%), Gaps = 41/352 (11%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + ++++L+        S+  +++   ++E GL  D + Y  +I    KSGKV+  ++
Sbjct: 583 TPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQ 642

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G++P V TYG++IDG AK  ++ +A+  +   +SK V  + VV+++LI   G
Sbjct: 643 LLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFG 702

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +D A+ +L E+  +   + P+  T   L+ A   A ++D A               
Sbjct: 703 KVGRIDEAYLILEELMQK--GLTPNTYTWNCLLDALVKAEEIDEA--------------- 745

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
                               C  + +M      P+EV  S +++      K   AF   Q
Sbjct: 746 ------------------LVC--FQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQ 785

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E + QG+    I+Y++++   +   N  +A +L+E  KS    P  +  NA+I  L + +
Sbjct: 786 EMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNAN 845

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE----VGLMLLSQAK 436
           +      +  + +  G    + T  +LL A  + D +E    VG +L   AK
Sbjct: 846 KAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADCLEQAAIVGAVLREMAK 897


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 217/495 (43%), Gaps = 52/495 (10%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-- 75
           A  VS  L ++N+L+    ++G + EC  LL+ + ++G+L     Y+     +C+  +  
Sbjct: 209 ASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELD 268

Query: 76  -AIKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            A++   R     P P + T+N L+  +C +SK  E    + +LV E GL+ D   Y TL
Sbjct: 269 AAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNE-GLEPDSFTYNTL 327

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    K G V     +    V  G  P+  TY +LIDG    G+  +A   +     K +
Sbjct: 328 IAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGI 387

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMN-----AEVHPVD----------------- 231
           KP+ +++N LI      G +  A  + +EM+      EV   +                 
Sbjct: 388 KPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADG 447

Query: 232 -----------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINC 278
                      PD  T   L+   +   +++ A E+  ++    +   P+VYT    +N 
Sbjct: 448 LVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVD--PDVYTYNSLLNG 505

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             +T  +E     Y  M +KG  P+    + L++      K++ A  +L+E KN+ ++  
Sbjct: 506 LCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPD 565

Query: 339 IISYSSLM-GACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEV 396
            +++ +L+ G C N  +   A  L+  M+ + +   +  T N +I A  +   +    ++
Sbjct: 566 AVTFGTLIDGFCKNG-DLDGAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKL 624

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC- 454
             +M    L P+  TY +++    +  +V++G   L +  E+G IP+L     +I  +C 
Sbjct: 625 FQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCV 684

Query: 455 -SRRYEKARTLNEHV 468
             R YE A  ++  V
Sbjct: 685 EDRVYEAAGIIHRMV 699



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 189/423 (44%), Gaps = 8/423 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPNPT---L 92
           R  R    + LL +M  +G  +M+ V +         +    E +  F K++ +     L
Sbjct: 158 RTSRPHAALRLLNNMSSQGC-EMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCL 216

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           STFN L+ V     D +   ++L  V + G+  +   Y   I    + G++DA   +   
Sbjct: 217 STFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGR 276

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           +++ G +P+V TY  LI G  K  +  +A    G + ++ ++PD   +N LI    + G 
Sbjct: 277 LIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGM 336

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V  A  +L  +NA  +   PD  T  +L+    + G+ +RA  ++       IK    +Y
Sbjct: 337 VQLAERIL--VNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILY 394

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I   S  G    A  +  +M++KG+IP+    + L++     G V  A  +++   +
Sbjct: 395 NTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMIS 454

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G    I +++ L+   S     + ALE+ + M    + P V T N+L+  LC   +   
Sbjct: 455 KGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYED 514

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
            ME    M   G  PN  T++ILL +  R   ++  L LL + K   V P+ V F  +I 
Sbjct: 515 VMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLID 574

Query: 452 GMC 454
           G C
Sbjct: 575 GFC 577



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 133/609 (21%), Positives = 240/609 (39%), Gaps = 96/609 (15%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERK-GLLDMDKVYHARFFNVCKSQK 75
           K   + H +S       +L   G+     ++L DM +  G   ++ VY     N  +  K
Sbjct: 32  KEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGVYVGAMKNYGRKGK 91

Query: 76  AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            ++EA   F+ +      PT+ ++N +MS+   S   + A +V   +++ G+  D   +T
Sbjct: 92  -VQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS- 190
             + +  ++ +  A   + + M + G E NV  Y  ++ G  +     + +  +G M + 
Sbjct: 151 IRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLAS 210

Query: 191 ----------------------------------KNVKPDRVVFNALITACGQSGAVDRA 216
                                             + V P+   +N  I    Q G +D A
Sbjct: 211 GVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAA 270

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY--KMIHKYNIKGTPEVYTI 274
             ++  +  +  P  PD +T   L+       +   A EVY  K++++  ++     Y  
Sbjct: 271 VRMVGRL-IDQGP-KPDVVTYNYLIYGLCKNSKFQEA-EVYLGKLVNE-GLEPDSFTYNT 326

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I    + G  + A  +  +    G +PDE    +LID   H G+   A  +  EA  +G
Sbjct: 327 LIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKG 386

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC------DGD 388
           I   +I Y++L+   SN     +A +L   M    L P V T N L+  LC      D D
Sbjct: 387 IKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD 446

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L K       M S G  P+  T++IL+     +  +E  L +L    ++GV P++  + 
Sbjct: 447 GLVKV------MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYN 500

Query: 449 CII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVS 506
            ++ G+C + +YE                           +  Y+  +  G  P +   +
Sbjct: 501 SLLNGLCKTSKYED-------------------------VMETYKTMVEKGCAPNLFTFN 535

Query: 507 KVLGCLQLPYNADIRERLVE---NLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEE 560
            +L  L   +  D    L+E   N  V+ DA+      +LIDGF   G+ D  A++L  +
Sbjct: 536 ILLESLCRYHKLDKALGLLEEMKNKSVNPDAV---TFGTLIDGFCKNGDLDG-AYTLFRK 591

Query: 561 AASFGIVPC 569
                +V C
Sbjct: 592 MEEVYMVSC 600



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 169/397 (42%), Gaps = 33/397 (8%)

Query: 180 KAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
           KA   +  MR ++  K     + ++I   G  G  +   +VL +M   V     + + +G
Sbjct: 22  KALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGVYVG 81

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           A MK     G+V  A  V++ +  Y+ + T   Y   ++    +G ++ A  VY  M  +
Sbjct: 82  A-MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDR 140

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD    +  +       +  AA  +L    +QG  + +++Y +++G         + 
Sbjct: 141 GITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEG 200

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            EL+  M +  +   +ST N L+  LC    + +  ++L  +   G+ PN  TY+  +  
Sbjct: 201 YELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQG 260

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRP 476
             +K +++  + ++ +  + G  P++V +  +I G+C + ++++A      ++  N G  
Sbjct: 261 LCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLV--NEGLE 318

Query: 477 QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALK 536
                + +L         +AG            G +QL       ER++ N   +     
Sbjct: 319 PDSFTYNTL---------IAGYCKG--------GMVQLA------ERILVNAVFNGFVPD 355

Query: 537 RSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVPCV 570
                SLIDG    GE + RA +L  EA   GI P V
Sbjct: 356 EFTYRSLIDGLCHEGETN-RALALFNEALGKGIKPNV 391



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/325 (24%), Positives = 130/325 (40%), Gaps = 61/325 (18%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI+    QG I E   L  +M  KGL+   + ++     +CK    + +A    K++
Sbjct: 394 YNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCK-MGCVSDADGLVKVM 452

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P + TFN+L+   ++    E A ++L ++ + G+  D   Y +L+    K+ K 
Sbjct: 453 ISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKY 512

Query: 144 DAMFEVFHEMVNAGIEPNVHTY-----------------------------------GAL 168
           + + E +  MV  G  PN+ T+                                   G L
Sbjct: 513 EDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTL 572

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKN----VKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           IDG  K G +    GAY + R       V      +N +I A  +   V  A  +  EM 
Sbjct: 573 IDGFCKNGDLD---GAYTLFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMV 629

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIA--INC-CS 280
                + PD  T   ++      G VD     YK + +    G  P + T+   INC C 
Sbjct: 630 DRC--LGPDGYTYRLMVDGFCKTGNVDLG---YKFLLEMMENGFIPSLTTLGRVINCLCV 684

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEV 305
           +   +E A  +   M +KG++P+ V
Sbjct: 685 EDRVYE-AAGIIHRMVQKGLVPEAV 708


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 190/436 (43%), Gaps = 21/436 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL------ 86
           N L R+GRI E + LL+ M   GL      Y      +CK    +       K+      
Sbjct: 192 NGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHI 251

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +PN  + +  ++ S+C   + S+ A  +   +QE G+  D   Y ++I     SG+    
Sbjct: 252 IPNVVIYS-AIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  EM+   I P+V TY ALI+   K G+  +A   Y  M  + + P+ + ++++I  
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   +D A  +   M  +     P+ IT   L+     A ++D   E+   + +  + 
Sbjct: 370 FCKQNRLDAAEHMFYLMATK--GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLV 427

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA--- 323
                Y   I+     GD   A  +  +M   G+ PD V    L+D     GK++ A   
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 324 FEILQEAKN--------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
           F+++Q++K          G+   + +Y+ L+    N   + +A ELYE M    + P   
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T +++I  LC   +L +  ++   M S    PN +T++ L+    +   V+ GL L  + 
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 436 KEDGVIPNLVMFKCII 451
              G++ N + +  +I
Sbjct: 608 GRRGIVANAITYITLI 623



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 197/436 (45%), Gaps = 25/436 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQKAIKEAFRFFKLVPN 89
           ++R  R    I L + MERK +     +Y       C     K   A+    +  KL  +
Sbjct: 89  VVRMERPDLVISLYQKMERKQI--RCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLH 146

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + TFN L+  +C   + SE A  +   + E   + +   +TTL+    + G++     
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSE-ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVA 205

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVVFNALITAC 207
           +   M+  G++P   TYG ++DG  K G    A      M    ++ P+ V+++A+I + 
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G    A ++  EM  +   + PD  T  +++    ++G+   A ++ + + +  I  
Sbjct: 266 CKDGRHSDAQNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISP 323

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   IN   + G +  A  +YD+M  +G+IP+ +  S++ID      +++AA  + 
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                +G S  +I++++L+     AK     +EL   M    L    +T N LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER---KDDVEVGLMLLSQAKED----- 438
             L   +++L +M S GLCP+ +T   LL   C+    KD +E+   ++ ++K+D     
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM-FKVMQKSKKDLDASH 502

Query: 439 ---GVIPNLVMFKCII 451
              GV P++  +  +I
Sbjct: 503 PFNGVEPDVQTYNILI 518



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 163/365 (44%), Gaps = 8/365 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +F +L+    S      A      + + GL  D   + TL+       +V     +FH+M
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                 PNV T+  L++G  + G++ +A      M    ++P ++ +  ++    + G  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++L +M  EV  + P+ +   A++ +    G+   A+ ++  + +  I   P+++T
Sbjct: 236 VSALNLLRKME-EVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI--FPDLFT 292

Query: 274 ---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
              + +  CS +G W  A  +  +M ++ + PD V  +ALI+     GK   A E+  E 
Sbjct: 293 YNSMIVGFCS-SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +GI    I+YSS++           A  ++  M +    P + T N LI   C   ++
Sbjct: 352 LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRI 411

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              ME+L +M   GL  +T TY+ L+       D+   L LL +    G+ P++V    +
Sbjct: 412 DDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTL 471

Query: 451 I-GMC 454
           + G+C
Sbjct: 472 LDGLC 476



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 167/388 (43%), Gaps = 41/388 (10%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    ++G+  E  +L ++M  +G++     Y +     CK Q  +  A
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRLDAA 379

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F L+     +P L TFN L+     +K  +   ++L  + E GL AD   Y TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
               G ++A  ++  EM+++G+ P++ T   L+DG    G++  A   + +M+      D
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP---VDPDHITIGALMKACANAGQVDRA 253
                                          HP   V+PD  T   L+    N G+   A
Sbjct: 500 -----------------------------ASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E+Y+ +    I      Y+  I+   +    + A  ++D M  K   P+ V  + LI+ 
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+V+   E+  E   +GI    I+Y +L+       N   AL++++ M S  + P 
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMK 401
             T+  ++T L   ++L + + +L  ++
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 147/331 (44%), Gaps = 6/331 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  L+    +  + D +  ++ +M    I  +++++  LI       ++  A   +G + 
Sbjct: 82  FCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLT 141

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
              + PD V FN L+        V  A ++  +M        P+ +T   LM      G+
Sbjct: 142 KLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT--CRPNVVTFTTLMNGLCREGR 199

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLS 308
           +  A  +   + +  ++ T   Y   ++   + GD   A ++   M +   +IP+ V  S
Sbjct: 200 IVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYS 259

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKS 367
           A+ID     G+   A  +  E + +GI   + +Y+S++ G CS+ + W  A +L + M  
Sbjct: 260 AIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR-WSDAEQLLQEMLE 318

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
            K+ P V T NALI A     +  +  E+  +M   G+ PNTITYS ++    +++ ++ 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
              +       G  PNL+ F  +I G C  +
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 147/372 (39%), Gaps = 19/372 (5%)

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A D+ ++M     P+ P  +    LM       + D    +Y+ + +  I+     
Sbjct: 59  GLEDAIDLFSDM-LRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYS 116

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +TI I C        FA S +  +TK G+ PD V  + L+       +V  A  +  +  
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
                  ++++++LM          +A+ L + M    L+PT  T   ++  +C      
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 392 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC- 449
             + +L  M+ +  + PN + YS ++ +  +         L ++ +E G+ P+L  +   
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 450 IIGMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 497
           I+G CS  R+  A         R ++  V+++N+       E K+   A  +Y E +  G
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE-AEELYDEMLPRG 355

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAF 555
            IP     S ++         D  E +   +     +       +LIDG+   +      
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 556 SLLEEAASFGIV 567
            LL E    G+V
Sbjct: 416 ELLHEMTETGLV 427


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 171/357 (47%), Gaps = 11/357 (3%)

Query: 114 VLRLVQE---AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           VL+L++E    GLK +   Y  +I    K+GKV     V  EM++ GI P+   Y  LID
Sbjct: 207 VLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 266

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G  K G V+ A+  +  M+ + + PD + + A+I    Q+G V  A  +  EM  +   +
Sbjct: 267 GFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCK--RL 324

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
           +PD +T  AL+      G++  A  ++  + +  +      YT   +   + G+ + A  
Sbjct: 325 EPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANE 384

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +  +M +KG+  +    ++L++    AG ++ A +++++ +  G     ++Y++LM A  
Sbjct: 385 LLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYC 444

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            ++   +A EL   M   +L+PTV T N L+   C    L    ++L  M   G+ PN  
Sbjct: 445 KSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNAT 504

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNE 466
           TY+ L+     ++++     +       GV+P+   +  +I G C     KAR + E
Sbjct: 505 TYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHC-----KARNMKE 556



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 163/332 (49%), Gaps = 6/332 (1%)

Query: 86  LVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           L PNP   T+N +++ +C + K +E A +VLR +   G+  D  +YTTLI    K G V 
Sbjct: 219 LKPNPY--TYNGVILLLCKTGKVAE-AERVLREMISEGIAPDGVIYTTLIDGFCKLGNVS 275

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           + + +F EM    I P+  TY A+I G  + G+V +A   +  M  K ++PD V + ALI
Sbjct: 276 SAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 335

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G +  AF +  +M      + P+ +T  AL       G+VD A E+   + +  
Sbjct: 336 DGYCKEGKMKEAFSLHNQMLQ--MGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKG 393

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           ++     Y   +N   + G+ + A  +  DM   G  PD V  + L+D    + ++  A 
Sbjct: 394 LELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAH 453

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+L++  ++ +   +++++ LM     +   +   +L + M    + P  +T N+LI   
Sbjct: 454 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQY 513

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           C  + +  T E+   M + G+ P+  TY+IL+
Sbjct: 514 CIRNNMRATTEIYRGMCAKGVVPDGNTYNILI 545



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 195/432 (45%), Gaps = 23/432 (5%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
           ++YN +I    + G+++E   +L +M  +G+     +Y       CK    +  A+R F 
Sbjct: 224 YTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGN-VSSAYRLFD 282

Query: 85  ---KLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
              K   +P   T+  ++  +C + +  E A ++   +    L+ D   YT LI    K 
Sbjct: 283 EMQKRKISPDFITYTAVICGLCQTGRVME-ADKLFHEMVCKRLEPDEVTYTALIDGYCKE 341

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK+   F + ++M+  G+ PN+ TY AL DG  K G+V  A      M  K ++ +   +
Sbjct: 342 GKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTY 401

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N+L+    ++G +D+A  ++ +M  EV    PD +T   LM A   + ++ RA E+ + +
Sbjct: 402 NSLVNGLCKAGNIDQAVKLMKDM--EVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQM 459

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               ++ T   + + +N    +G  E    +   M +KG++P+    ++LI        +
Sbjct: 460 LDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNM 519

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            A  EI +    +G+     +Y+ L+     A+N ++A  L+  M       TVS+ NAL
Sbjct: 520 RATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNAL 579

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I       +  +  E+   M+  GL  +   Y+I       +  +E+ L L  +A E   
Sbjct: 580 IKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIE--- 636

Query: 441 IPNLVMFKCIIG 452
                  KC++G
Sbjct: 637 -------KCLVG 641



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 114/283 (40%), Gaps = 44/283 (15%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +++YN L+    + G I + + L++DME  G       Y       CKS++ ++     
Sbjct: 397 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 456

Query: 84  FKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +++     PT+ TFN+LM+    S   E   ++L+ + E G+  +   Y +LI      
Sbjct: 457 RQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIR 516

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
             + A  E++  M   G+ P+ +TY  LI G  KA  + +A+  +  M  K        F
Sbjct: 517 NNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG-------F 569

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N  ++                              +  AL+K      +   ARE+++ +
Sbjct: 570 NLTVS------------------------------SYNALIKGFYKRKKFLEARELFEQM 599

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
            +  +    E+Y I  +     G  E    + D+  +K ++ D
Sbjct: 600 RREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGD 642


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 193/459 (42%), Gaps = 48/459 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKLVP 88
           L R G  +  +D    M  +G+     +Y+A    +CK      ++  +K+ F   ++ P
Sbjct: 190 LSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES-EMSP 248

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           + T +  +M++  C    D + A QV   + + G + +   Y+TLI     SG+V+  F+
Sbjct: 249 D-TFTYTSMILGHC-RKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFD 306

Query: 149 VFHEMV-----------------------------------NAGIEPNVHTYGALIDGCA 173
           +  EM+                                   N G EPNV+TY ALI G  
Sbjct: 307 LIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLC 366

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
            +G +  A G +  M    V P+ V +NALI    ++  +  AF VL  M    +   P+
Sbjct: 367 VSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR--NGCSPN 424

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +T   ++K     G   +A  V   + +         Y   I     +G+   A  + D
Sbjct: 425 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 484

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 352
            M   G  PDE   + LI       K+E+AF +  E  + G+    ++Y++L+ G C + 
Sbjct: 485 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 544

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           K    A  L EHMK    +P V T N LI  L   +      E+   M   G+ PN +TY
Sbjct: 545 K-LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + ++    +     + L + ++  E G +PNL+ +  +I
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 180/422 (42%), Gaps = 46/422 (10%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L+  C S +        L ++ ++GL+     Y+ L+   ++ G   A+ + +H M++ G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 158 IEPNVHTYGALIDGCAKAGQVA-----------------------------------KAF 182
           ++PN+  Y A+I+   K G VA                                    A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALM 241
             +  M  +  +P+ V ++ LI     SG V+ AFD++ EM   +H + P  H   G ++
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM--ILHGILPTAHTCTGPII 328

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKG 299
             C      D  R    M +K      P VYT    I+    +G  + A  ++  M++ G
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNK---GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDG 385

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           V P+ V  +ALI+      +++ AF +L      G S  I++Y+ ++       + +KA+
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            +  +M        + T N +I   CD       + +L  M+  G  P+  +Y+ L+   
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQ 477
            +   +E    L ++  +DG+ PN V +  +I G C   + + A +L EH +  +  RP 
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH-MKRSGCRPN 564

Query: 478 IE 479
           ++
Sbjct: 565 VQ 566



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 191/435 (43%), Gaps = 14/435 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L  +N +++      +   A  +++ V E+ +  D   YT++I    +   +D+  +V
Sbjct: 213 PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F++M   G EPN  TY  LI+G   +G+V +AF     M    + P        I A   
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  + A+ +  +M  +    +P+  T  AL+     +G +  A  ++  + +  +    
Sbjct: 333 MGCYEDAWRLFVDMKNK--GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNT 390

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   IN   +    ++A  V + M + G  P+ V  + +I      G  + A  ++  
Sbjct: 391 VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNN 450

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G S  +++Y++++    ++ N   AL + + M+    KP   +   LI   C   +
Sbjct: 451 MLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK 510

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +     + ++M   GLCPN +TY+ L+    + + ++    LL   K  G  PN+  +  
Sbjct: 511 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV 570

Query: 450 IIGMCSRR--YEKARTLNE---------HVLSFNSGRPQI-ENKWTSLALMVYREAIVAG 497
           +I   +++  +  A  L +         +V+++ +    + +N  TSLAL ++ + I  G
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 498 TIPTVEVVSKVLGCL 512
            +P +   S ++  L
Sbjct: 631 CLPNLLTYSSLIRAL 645



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 153/374 (40%), Gaps = 7/374 (1%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVC 102
           L  DM+ KG       Y A    +C S   +K A   F  +      P   T+N L+++ 
Sbjct: 342 LFVDMKNKGCEPNVYTYTALISGLCVS-GLLKVAIGLFHRMSRDGVFPNTVTYNALINIL 400

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
             ++  + AF VL L+   G   +   Y  +I      G       V + M+  G   N+
Sbjct: 401 VENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANL 460

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY  +I G   +G    A     +MR    KPD   +  LI    +   ++ AF +  E
Sbjct: 461 VTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNE 520

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  +   + P+ +T  AL+       ++D A  + + + +   +   + Y + I+  ++ 
Sbjct: 521 MVDD--GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
            ++  A  +   M ++G+ P+ V  +A+ID     G    A E+  +   QG    +++Y
Sbjct: 579 NNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTY 638

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           SSL+ A       ++A  L+  ++   L P   T   +I A     ++      L  M  
Sbjct: 639 SSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK 698

Query: 403 LGLCPNTITYSILL 416
            G  P   TY +L+
Sbjct: 699 AGCQPTLWTYGVLI 712



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 5/348 (1%)

Query: 110 GAFQVL--RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           G F  L  RLV      A  +    LI +C     +         +  +G+   +  Y A
Sbjct: 126 GTFAALARRLVDARRYAAAGRARIHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSA 185

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+   ++ G  A     Y  M S+ V+P+ +++NA+I A  + G V  A  ++ ++    
Sbjct: 186 LLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES- 244

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD  T  +++        +D A +V+  + K   +     Y+  IN    +G    
Sbjct: 245 -EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNE 303

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  +  +M   G++P     +  I      G  E A+ +  + KN+G    + +Y++L+ 
Sbjct: 304 AFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALIS 363

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
               +   + A+ L+  M    + P   T NALI  L +  ++     VL+ M   G  P
Sbjct: 364 GLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSP 423

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           N +TY+ ++       D +  +++++   + G   NLV +  II G C
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYC 471



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 164/424 (38%), Gaps = 35/424 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  LI    +  ++     L  +M   GL   +  Y A     CK +K +  A    + 
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK-LDTATSLLEH 555

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N+L+       +  GA ++ +++ E G+  +   YT +I    K+G 
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                E+F++M+  G  PN+ TY +LI    + G+V +A   +  +    + PD + +  
Sbjct: 616 TSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK 675

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA------------------- 243
           +I A   SG V+ AF+ L  M        P   T G L+K                    
Sbjct: 676 MIEAYIMSGKVEHAFNFLGRMIKA--GCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVV 733

Query: 244 --CANAGQVDRAREVYKM---IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
             C+   Q      V  M   + + +   + +V    ++  S  G W  A  +   M  +
Sbjct: 734 PNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQ 793

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD+   ++L+        V+ A  + +    QG  V +  Y  L+ A       ++A
Sbjct: 794 GLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEA 853

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
              +E+M      P       LI  L         ME L  M++    P+   Y+IL   
Sbjct: 854 RITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILARE 913

Query: 419 CERK 422
             +K
Sbjct: 914 ASKK 917



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 137/360 (38%), Gaps = 33/360 (9%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            + +YN LI    +Q   S   +L + M  +G+      Y A    +CK+         F
Sbjct: 564 NVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMF 623

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            K++     P L T++ L+         E A  +   ++  GL  D   Y  +I     S
Sbjct: 624 NKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMS 683

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK-------------AFG---- 183
           GKV+  F     M+ AG +P + TYG LI G      +A              +FG    
Sbjct: 684 GKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTT 743

Query: 184 ---AYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
              A  +M +K  + D      V NAL++    +G    A ++L  M ++   + PD   
Sbjct: 744 DQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQ--GLCPDQEA 801

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +L+ +      VD A  V+K +     +     Y   I    Q    + A   +++M 
Sbjct: 802 YNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENML 861

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            +   PD+V  + LID     G  +   E L   + +        Y+ L    S  ++W+
Sbjct: 862 MRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAREASKKRSWK 921


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 2/325 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ML++      D   AF +   +  +GL+ D  +Y  LI    K G +D    +  +M
Sbjct: 476 TYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKM 535

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               ++P+   +  +I+G A AG +  A     +MR     P  + +NALI    +   V
Sbjct: 536 QKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKV 595

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            RA  VL +M+  +  + P+  T   +M+  A +G + +A E +  I +  +K    +Y 
Sbjct: 596 QRAVSVLDKMS--IAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYE 653

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++++ K  
Sbjct: 654 TLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED 713

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+   I +Y+S + AC  A + Q+A ++ E M  + LKP V T   LI          + 
Sbjct: 714 GVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRA 773

Query: 394 MEVLSDMKSLGLCPNTITYSILLVA 418
           ++   +MK  GL P+  +Y  L+ +
Sbjct: 774 LKCFEEMKLAGLKPDEASYHCLVTS 798



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 2/343 (0%)

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           V   ++E G K     Y  L+    K GKV     +  EM + GI+ N  TY  LI+G  
Sbjct: 426 VFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFI 485

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
                A AF  +  M    ++PDR ++N LI A  + G +DRA  +L +M  E   + P 
Sbjct: 486 HLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKER--MQPS 543

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
           +     +++  A AG +  A +   ++ +     T   Y   I+   +    + A SV D
Sbjct: 544 NRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLD 603

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M+  G+ P+E   + ++     +G +  AFE   + K  G+ + +  Y +L+ AC  + 
Sbjct: 604 KMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSG 663

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             Q AL +   M   K+       N LI        + +  +++  MK  G+ PN  TY+
Sbjct: 664 RMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYT 723

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             + AC +  D++    ++ +  + G+ PN+  +  +I   +R
Sbjct: 724 SYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 766



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 160/359 (44%), Gaps = 3/359 (0%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N++ + C S  + E A +++R ++E G+ A   +Y +++         +    VF  +  
Sbjct: 374 NIIHAHCQSG-NMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKE 432

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G +P++ +YG L++   K G+VAKA      M S  +K +   ++ LI           
Sbjct: 433 CGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN 492

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           AF +  EM      + PD      L++A    G +DRA  + + + K  ++ +   +   
Sbjct: 493 AFAIFEEMLRS--GLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPI 550

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I   +  GD + A    D M + G +P  +  +ALI       KV+ A  +L +    GI
Sbjct: 551 IEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGI 610

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           +    +Y+ +M   + + +  KA E +  +K   LK  V     L+ A C   ++   + 
Sbjct: 611 TPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 670

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           V  +M    +  NT  Y+IL+    R+ DV     L+ Q KEDGV PN+  +   I  C
Sbjct: 671 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINAC 729



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 178/404 (44%), Gaps = 33/404 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +P P+   F +++   A   D   A      ++  G++ +  ++T+L+   A +  +
Sbjct: 256 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 315

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                   EM + G+E  + TY  LI G AK      A   +   ++K    + ++++ +
Sbjct: 316 RGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNI 375

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  QSG ++RA +++ EM  +    P+D                              
Sbjct: 376 IHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGF 435

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  I+ G L+      G+V +A  + K +    IK   + Y++ IN      D+  A +
Sbjct: 436 KPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFA 495

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           ++++M + G+ PD    + LI+     G ++ A  IL++ + + +     ++  ++   +
Sbjct: 496 IFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYA 555

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A + + AL+  + M+     PTV T NALI  L    ++ + + VL  M   G+ PN  
Sbjct: 556 VAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEH 615

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+I++       D+       ++ KE G+  ++ +++ ++  C
Sbjct: 616 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 659



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 141/341 (41%), Gaps = 40/341 (11%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           + E+M R GL     +Y+      CK     +AI    +  K    P+   F  ++   A
Sbjct: 496 IFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYA 555

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
            + D + A   L L++ +G       Y  LI    +  KV     V  +M  AGI PN H
Sbjct: 556 VAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEH 615

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           TY  ++ G A +G + KAF  +  ++   +K D  ++  L+ AC +SG +  A  V  EM
Sbjct: 616 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 675

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
           + +  P +        L+   A  G V  A ++ K + +  +      YT  IN C + G
Sbjct: 676 SFQKIPRNT--FIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAG 733

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           D + A  V ++M   G+ P+                                   + +Y+
Sbjct: 734 DMQRAEKVIEEMVDVGLKPN-----------------------------------VKTYT 758

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +L+   +      +AL+ +E MK   LKP  ++ + L+T+L
Sbjct: 759 TLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSL 799



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 107/238 (44%), Gaps = 13/238 (5%)

Query: 27  EQLHSYNRLIRQ--------GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           E++   NR  R         G +   +D L+ M R G +     Y+A    + +  K  +
Sbjct: 538 ERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQR 597

Query: 79  EAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
                 K+      P   T+ ++M   A+S D   AF+    ++E+GLK D  +Y TL+ 
Sbjct: 598 AVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 657

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
            C KSG++ +   V  EM    I  N   Y  LIDG A+ G V +A      M+   V P
Sbjct: 658 ACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPP 717

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           +   + + I AC ++G + RA  V+ EM  +V  + P+  T   L+K  A     DRA
Sbjct: 718 NIHTYTSYINACCKAGDMQRAEKVIEEM-VDVG-LKPNVKTYTTLIKGWARVSLPDRA 773



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VP P + T+   ++ C  + D + A +V+  + + GLK + K YTTLI   A+    D  
Sbjct: 715 VP-PNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRA 773

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            + F EM  AG++P+  +Y  L+        V +     GI+
Sbjct: 774 LKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGII 815


>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g16010-like [Cucumis sativus]
          Length = 637

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 175/370 (47%), Gaps = 5/370 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P   T++ L+S     +  + AF++   ++E GL    K+YTT++    K  KV+A   
Sbjct: 227 SPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALR 286

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G  P V TY  LI G  K G+V  A+  +  M     KPD V+ N LI   G
Sbjct: 287 LVEEMKGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILG 346

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC-ANAGQVDRAREVYKMIHKYNIKG 267
           ++G ++ A  +  +M++      P+ +T   ++KA   +      A   ++ +    I  
Sbjct: 347 RAGRLEDALKLFGKMDS--LQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAP 404

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +   Y I I+   +T   E A  + ++M +KG  P      +LID  G A + EAA E+ 
Sbjct: 405 SSFTYAILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELF 464

Query: 328 QEAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           QE K N G S   + Y+ ++    N      A++L+   + +   P V T NAL++ +  
Sbjct: 465 QELKENCGRSSARV-YAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIR 523

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              + +   ++ +M+  G  P+  +++I+L    +    +  + + ++ KE  ++P+ V 
Sbjct: 524 AGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVS 583

Query: 447 FKCIIGMCSR 456
           +  I+   SR
Sbjct: 584 YNTILSCLSR 593



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 174/385 (45%), Gaps = 12/385 (3%)

Query: 47  LLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           L ++M+  GL   +K+Y    A +F + K + A++           PT+ T+  L+    
Sbjct: 252 LFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLG 311

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
                + A+ +   + + G K D  L   LI    ++G+++   ++F +M +    PNV 
Sbjct: 312 KVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVV 371

Query: 164 TYG----ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           TY     A+ +  A A + A  F     M++  + P    +  LI    ++  V++A  +
Sbjct: 372 TYNTVIKAIFESKAPASEAALWFEK---MKANGIAPSSFTYAILIDGFCKTNRVEKALLL 428

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L EM+ +  P  P      +L+ +   A + + A E+++ + +   + +  VY + I   
Sbjct: 429 LEEMDEKGFP--PCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHF 486

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
              G    A  ++ +  K G  PD    +AL+     AG ++ A  +++  +  G +  I
Sbjct: 487 GNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDI 546

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            S++ ++   +     ++A+E++  MK  ++ P   + N +++ L          +++ +
Sbjct: 547 KSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMRE 606

Query: 400 MKSLGLCPNTITYSILLVACERKDD 424
           MK  G   ++ITYS +L A  + D+
Sbjct: 607 MKLKGFEYDSITYSSILEAVGKVDE 631



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 30/355 (8%)

Query: 107 DSEGAFQVLRLVQEAGL------------KADCKL----YTTLITTCAKSGKVDAMFEVF 150
           DS     ++R ++E+GL            ++ C +    ++ ++    K+  V+    VF
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG-IMRSKNVKPDRVVFNALITACGQ 209
           +++      P    Y  LI      G   K    Y  I    N  PD + ++ALI+A G+
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 210 SGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
               D AF +  EM    +HP +  + TI A+        ++++     +++ +   KG 
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAMY------FKLNKVEAALRLVEEMKGKGC 296

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P V  YT  I    + G  + A S++ +M K G  PD V ++ LI+  G AG++E A +
Sbjct: 297 APTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALK 356

Query: 326 ILQEAKNQGISVGIISYSSLMGAC--SNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           +  +  +   +  +++Y++++ A   S A   + AL  +E MK+  + P+  T   LI  
Sbjct: 357 LFGKMDSLQCAPNVVTYNTVIKAIFESKAPASEAAL-WFEKMKANGIAPSSFTYAILIDG 415

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            C  +++ K + +L +M   G  P    Y  L+ +  R    E    L  + KE+
Sbjct: 416 FCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKEN 470



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 1/152 (0%)

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D     ALI     +G V+  +  +Q+      SVG   +S ++     AK   KAL ++
Sbjct: 123 DSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVF 182

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACER 421
             +K  K  PT +  N LI  L       K  E+ +++ S G C P+TITYS L+ A  +
Sbjct: 183 YQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGK 242

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
            +  +    L  + KE+G+ P   ++  I+ M
Sbjct: 243 LERYDFAFRLFDEMKENGLHPTEKIYTTILAM 274


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 209/505 (41%), Gaps = 96/505 (19%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTLST 94
           G+  +   ++++M RKG +     Y      +C++++ + +AF  F    K+  NP + T
Sbjct: 431 GKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKR-VDKAFLLFQEMKKVGVNPDVYT 489

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + +L+     +   E A      ++ AG   +   YT L+    KS ++    ++FH MV
Sbjct: 490 YTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMV 549

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG--IMRSKNVK--------------PDRV 198
                PN  TY ALIDG  KAG++ KA   Y   I  S N++              P+ V
Sbjct: 550 GDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVV 609

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY- 257
            + AL+    ++  V  A D+L  M A     +P+ I   AL+      G++D A+EV+ 
Sbjct: 610 TYGALVNGLCKAQKVSDAHDLLDAMLAA--GCEPNQIVYDALVDGFCKVGEIDSAQEVFL 667

Query: 258 --------KMIHKYN----------------------IKGT--PEV--YTIAINCCSQTG 283
                     +H Y                       +K +  P V  YT  ++   +TG
Sbjct: 668 RMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTG 727

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           + E A ++   M KKG  P+ V  +ALID  G AGKV+A  E+  + K +G +   ++Y 
Sbjct: 728 ETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYR 787

Query: 344 SLMGACSNA---------------KNWQKALELY------------------EHMKSIKL 370
            L+  C  A                +W K L+ Y                  E M+S   
Sbjct: 788 ILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDT 847

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDM----KSLGLCPNTITYSILLVACERKDDVE 426
            P       LI +     +L   +E+  +M     SL +    +  S++   C     VE
Sbjct: 848 APIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALC-LSSQVE 906

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII 451
             + L S+ +  G++P+L  F C++
Sbjct: 907 EAVALYSEMRRRGIVPDLSAFVCLV 931



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 201/449 (44%), Gaps = 36/449 (8%)

Query: 7   NMLQFPYPNGKHANYAHDVSEQLHS---------YNRLIRQ--GRIS----ECIDLLEDM 51
           N L   Y N +   YA+ +  ++++         YN  I    GR      E +DL E +
Sbjct: 345 NSLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKV 404

Query: 52  ERKGLLD---MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCAS 104
             + L+    ++K+  A F          ++AF+  K +      P  ST+  +++    
Sbjct: 405 YEEMLVASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQ 464

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164
           +K  + AF + + +++ G+  D   YT LI +  K+G ++     F EM +AG  PNV T
Sbjct: 465 AKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVT 524

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM- 223
           Y AL+    K+ Q+ +A   +  M      P+ + ++ALI    ++G + +A +V A++ 
Sbjct: 525 YTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLI 584

Query: 224 -------------NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
                          +   + P+ +T GAL+     A +V  A ++   +     +    
Sbjct: 585 GTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQI 644

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           VY   ++   + G+ + A  V+  MTK G +P     ++LID     G+++ A ++L + 
Sbjct: 645 VYDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM 704

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
                +  +++Y++++         +KAL L   M+     P V T  ALI  L    ++
Sbjct: 705 LKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKV 764

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVAC 419
              +E+   MK+ G  PN +TY IL+  C
Sbjct: 765 DAGLELFMQMKTKGCAPNYVTYRILINHC 793



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 166/356 (46%), Gaps = 9/356 (2%)

Query: 89  NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +P + T+  L++ +C + K S+ A  +L  +  AG + +  +Y  L+    K G++D+  
Sbjct: 605 SPNVVTYGALVNGLCKAQKVSD-AHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQ 663

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           EVF  M   G  P+VHTY +LID   K G++  A      M   +  P+ V + A++   
Sbjct: 664 EVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGL 723

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G  ++A ++L+ M  E     P+ +T  AL+     AG+VD   E++  +       
Sbjct: 724 CKTGETEKALNLLSLM--EKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAP 781

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y I IN C   G  + A  + D+M K+   P +          G + +  A+  +L
Sbjct: 782 NYVTYRILINHCCAAGLLDDAHLLLDEM-KQTHWP-KYLQGYRTTVQGFSKRFLASLGLL 839

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN---ALITAL 384
           +E ++   +     Y  L+ + S A   + ALEL++ M  +     +++ +   +LI AL
Sbjct: 840 EEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQAL 899

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           C   Q+ + + + S+M+  G+ P+   +  L+     ++     L L     ++GV
Sbjct: 900 CLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQEGV 955



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 103/437 (23%), Positives = 175/437 (40%), Gaps = 61/437 (13%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV-------------------- 114
           +A++E  R       P+  T+N L+ V AS+   E AF+V                    
Sbjct: 187 EALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFA 246

Query: 115 ------------LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
                       L L++    K D  L T +I+   ++   +      H M      PNV
Sbjct: 247 QALCKEGRWGDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIPNV 306

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY  L+ G  K  Q+        +M ++   P   +FN+L+     +     A+ +   
Sbjct: 307 VTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNR 366

Query: 223 MNAEVHPVDPDHIT----IGAL--MKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIA 275
           MN    P  P ++     IG++   +   N   +D A +VY +M+    +         A
Sbjct: 367 MNTCGCP--PGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFA 424

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
             C    G +E A  +  +M +KG +PD    + +I F   A +V+ AF + QE K  G+
Sbjct: 425 -RCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGV 483

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           +  + +Y+ L+ +   A   ++A   ++ M+S    P V T  AL+ A     QL +  +
Sbjct: 484 NPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQAND 543

Query: 396 VLSDMKSLGLCPNTITYSILL----------VACE-------RKDDVEVGLMLLSQAKED 438
           +   M      PN ITYS L+           ACE         D++E       +   D
Sbjct: 544 IFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGK-DTD 602

Query: 439 GVIPNLVMFKCII-GMC 454
            + PN+V +  ++ G+C
Sbjct: 603 TISPNVVTYGALVNGLC 619



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/438 (19%), Positives = 160/438 (36%), Gaps = 76/438 (17%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T + ++ L  V      +  A ++LR + E       +L   L+  C   G      E  
Sbjct: 133 TGACYDALAEVLGFEDPARTAERLLREIGEDDRDVLGRLLNVLVRRCCLQGLWGEALEEL 192

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF---------------------------- 182
             + + G  P+  TY AL+   A AGQV  AF                            
Sbjct: 193 GRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKE 252

Query: 183 GAYG----IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
           G +G    ++  ++ K D V+   +I+   ++   + A   L  M    +   P+ +T  
Sbjct: 253 GRWGDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYI--PNVVTYR 310

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+       Q+   + +  M+       +P ++   ++      D+ +A  +++ M   
Sbjct: 311 TLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAYAYKLFNRMNTC 370

Query: 299 GVIPD----EVFLSA-----------LIDFAGH--------------------------A 317
           G  P      +F+ +           L+D A                             
Sbjct: 371 GCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGV 430

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           GK E AF+I++E   +G      +Y+ ++     AK   KA  L++ MK + + P V T 
Sbjct: 431 GKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTY 490

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             LI + C    + +      +M+S G  PN +TY+ LL A  +   +     +  +   
Sbjct: 491 TILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVG 550

Query: 438 DGVIPNLVMFKCII-GMC 454
           D   PN + +  +I G+C
Sbjct: 551 DACYPNAITYSALIDGLC 568



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 72/212 (33%), Gaps = 34/212 (16%)

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
           CC Q G W  A      +   G  P  V  +AL+     AG+VE AF + +E    G  +
Sbjct: 179 CCLQ-GLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCM 237

Query: 338 GIISYSSLMGACSNAKNWQKALELYEH--------------------------------M 365
              +  S   A      W  AL+L E                                 M
Sbjct: 238 DRSTVGSFAQALCKEGRWGDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRM 297

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           +     P V T   L+T      QL     +++ M + G  P+   ++ L+      +D 
Sbjct: 298 RCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDY 357

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR 456
                L ++    G  P  V++   IG +C R
Sbjct: 358 AYAYKLFNRMNTCGCPPGYVVYNIFIGSICGR 389


>gi|449446855|ref|XP_004141186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Cucumis sativus]
          Length = 1079

 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 111/504 (22%), Positives = 211/504 (41%), Gaps = 63/504 (12%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + S+N LI     QG++ + +++L  MER G +     Y+      CK     K  
Sbjct: 171 VCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCK-----KGR 225

Query: 81  FRFFKLVPN--------PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           F+F  ++ +          + T+NM + S+C +S+ ++G + VL+ ++   +  +   Y 
Sbjct: 226 FKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQG-YLVLKKMRNKMITPNEVSYN 284

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           TLI    K GK+     VF+EM+   + PN+ TY  LI+G    G   +A     +M + 
Sbjct: 285 TLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRVLDVMEAN 344

Query: 192 NVKPDRVVFNALITACGQS-----------------------------------GAVDRA 216
           +V+P+ V    L+    +S                                   G +D A
Sbjct: 345 DVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVMIDGLCRNGLLDEA 404

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
           F +L EM  +   V PD IT   L+      G +++A+EV   I++        +++  I
Sbjct: 405 FQLLIEMCKD--GVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREGFVPNNVIFSTLI 462

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
               + G+   A   Y  M   G   D    ++L+      GK+  A E L      G+ 
Sbjct: 463 YNSCKVGNVYEAMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLV 522

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
              +++  ++   +N  +   A  +++ M S    P+  T  +L+  LC G    +  ++
Sbjct: 523 PNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHPSPFTYGSLLKVLCKGQNFWEARKL 582

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L  +  + L  +TI+Y+ L+V   +  ++   + L  +  ++ ++P+   + CI+    R
Sbjct: 583 LKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIR 642

Query: 457 RYE-------KARTLNEHVLSFNS 473
                       R + + +L+ NS
Sbjct: 643 EGRLVCAFIFLGRLMQKEILTLNS 666



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 181/421 (42%), Gaps = 44/421 (10%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           +RQG +   ++    M  +G        +    ++ K+ +A    + FFK +      P 
Sbjct: 116 LRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRA-HLVWSFFKQMLTSRVCPN 174

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +S+FN+L+SV       + A  +L +++  G       Y TL++ C K G+      + H
Sbjct: 175 VSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIH 234

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC---G 208
            M   GI+ +V TY   ID   +  + A+ +     MR+K + P+ V +N LI      G
Sbjct: 235 HMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEG 294

Query: 209 QSGAVDRAFDVLAEMN------------------------------AEVHPVDPDHITIG 238
           + G   R F+ + E+N                               E + V P+ +TIG
Sbjct: 295 KIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRVLDVMEANDVRPNEVTIG 354

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDM 295
            L+     + + D AR +   + +Y I  T      +T+ I+   + G  + A  +  +M
Sbjct: 355 TLLNGLYKSAKFDVARNI---LERYCINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEM 411

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            K GV PD +  S LI+     G +  A E++ +   +G     + +S+L+       N 
Sbjct: 412 CKDGVHPDIITFSVLINGFCKVGNINKAKEVMSKIYREGFVPNNVIFSTLIYNSCKVGNV 471

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +A++ Y  M          T N+L+ +LC+  +L +  E L  +  +GL PN++T+  +
Sbjct: 472 YEAMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCI 531

Query: 416 L 416
           +
Sbjct: 532 I 532



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/446 (19%), Positives = 186/446 (41%), Gaps = 22/446 (4%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE-----AF 81
            SYN LI    + G + E + L E+M +  +L     Y       C     I+E     AF
Sbjct: 597  SYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYTY------TCILSGLIREGRLVCAF 650

Query: 82   RFFKLVPNPTLSTFNMLMSVCA-----SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             F   +    + T N ++  C       +  S+ A  + + ++E GL  D     ++   
Sbjct: 651  IFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDG 710

Query: 137  CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             ++ GKV +   +  +  N  + PN+ T+  L+ G ++   +   F  Y +MR     P+
Sbjct: 711  YSRMGKVFSASSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPN 770

Query: 197  RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            R+ +++LI      G ++    +L    AE   +D   +T   L++ C     +D+  ++
Sbjct: 771  RLTYHSLILGLCNHGMLELGIKMLKMFIAESSTIDD--LTFNMLIRKCCEINDLDKVIDL 828

Query: 257  YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
               +  + +    +      +   +    +       +M KKG IP       ++     
Sbjct: 829  THNMEVFRVSLDKDTQKAVTDVLVRRMVSQNYFVFMHEMLKKGFIPTSKQYCTMMKRMCR 888

Query: 317  AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
             G ++ AF++  +    GIS+   +  +++   +     ++A+ + + M  +K  PT ST
Sbjct: 889  VGDIQGAFKLKDQMVALGISLDDAAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTST 948

Query: 377  MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
               L+   C  D   +   +   M+   +  + + Y++L+ AC    DV   L    + K
Sbjct: 949  FTTLMHVFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVITALDFYEEIK 1008

Query: 437  EDGVIPNLVMFKCIIGMCSRRYEKAR 462
            + G++PN+  ++ ++   S ++  +R
Sbjct: 1009 QKGLLPNMTTYRVLVSAISTKHYVSR 1034



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/316 (19%), Positives = 114/316 (36%), Gaps = 10/316 (3%)

Query: 29   LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
            LH Y+R      I  C  L   M R G       YH+    +C +   ++   +  K+  
Sbjct: 743  LHGYSR---GQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLC-NHGMLELGIKMLKMFI 798

Query: 89   NPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              + +    TFNML+  C    D +    +   ++   +  D      +     +     
Sbjct: 799  AESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDTQKAVTDVLVRRMVSQ 858

Query: 145  AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              F   HEM+  G  P    Y  ++    + G +  AF     M +  +  D     A++
Sbjct: 859  NYFVFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQGAFKLKDQMVALGISLDDAAECAMV 918

Query: 205  TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                  G ++ A  +L  M   +  + P   T   LM           A  +  ++  Y 
Sbjct: 919  RGLALCGKIEEAMWILQRM-LRMKKI-PTTSTFTTLMHVFCKKDNFKEAHNLKILMEHYR 976

Query: 265  IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            +K     Y + I+ C   GD   A   Y+++ +KG++P+      L+        V    
Sbjct: 977  VKLDIVAYNVLISACCANGDVITALDFYEEIKQKGLLPNMTTYRVLVSAISTKHYVSRGE 1036

Query: 325  EILQEAKNQGISVGII 340
             +L++  ++G+  G +
Sbjct: 1037 IVLKDLNDRGLVSGYL 1052



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 342 YSSLMGACSNAKNWQKAL--ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           Y+  M   S  KN +  L    ++ M + ++ P VS+ N LI+ LC   +L K + +L+ 
Sbjct: 141 YTCNMIMASMVKNCRAHLVWSFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTM 200

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           M+  G  P  ++Y+ LL  C +K   +  L+L+   +  G+  ++  +   I    R   
Sbjct: 201 MERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSR 260

Query: 460 KAR 462
            A+
Sbjct: 261 SAQ 263



 Score = 38.5 bits (88), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 22/113 (19%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A+  +  M     KP+V T N ++ ++    +          M +  +CPN  +++IL+ 
Sbjct: 124 AVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVWSFFKQMLTSRVCPNVSSFNILIS 183

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468
               +  ++  + +L+  + +G +P +V +  ++  C +  R++ A  L  H+
Sbjct: 184 VLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHM 236


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 182/394 (46%), Gaps = 10/394 (2%)

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
             +  NV   +   +EA   F  + +    PTL T+  L++     K  +   +++  V+
Sbjct: 16  RTKLMNVLIGKGKPREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVE 75

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           E G+K D  L+ ++I   ++SG +    ++F +M  +G +P   T+  LI G   AG+  
Sbjct: 76  ENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTE 135

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           +A      ++   VKP++  +N L+ A      ++ A++++ +M A    + PD +T   
Sbjct: 136 EALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVA--SGMQPDAVTYNT 193

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTK 297
           L +A A  G+  RA E+  ++   N + TP   T  I +N   + G+   A      M +
Sbjct: 194 LARAYAEKGETIRAEEM--ILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKE 251

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            GV+P+    ++LI         E   E+L   +  G+   ++++S++M A S+A    K
Sbjct: 252 LGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDK 311

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
             E++  M   +++P +   + L        +  K   +L+ M+  G+ PN +  + ++ 
Sbjct: 312 CKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVIS 371

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                  +E  + +  +  E GV PNL  ++ +I
Sbjct: 372 GWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLI 405



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 169/388 (43%), Gaps = 42/388 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L RQ      + L+  +E  G+   D +      N       +KEA + F+ +      P
Sbjct: 58  LTRQKLFKSILRLISKVEENGM-KPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKP 116

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T STFN L+    ++  +E A ++L  +Q+ G+K + + Y  L+        ++  + + 
Sbjct: 117 TTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMV 176

Query: 151 HEMVNAGIEPNVHTYGAL-----------------------------------IDGCAKA 175
           ++MV +G++P+  TY  L                                   ++G  K 
Sbjct: 177 YKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKE 236

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G +  A      M+   V P+  VFN+LI     +   +   +VL  M  E + V PD +
Sbjct: 237 GNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLM--EENGVRPDVV 294

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   +M A ++AG++D+ +E++  + K  I+     ++I      + G+ E A S+   M
Sbjct: 295 TFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSM 354

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            K GV P+ V  + +I     AGK+E A ++ ++    G+S  + +Y +L+     AK  
Sbjct: 355 RKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQP 414

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITA 383
            KA EL + M+   + P   TM  +  A
Sbjct: 415 LKAEELLQVMEEKGVFPKKGTMQLIADA 442



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 135/315 (42%), Gaps = 23/315 (7%)

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           G  R + V+    + N LI      G    A  +   +  E H   P  IT   L+ A  
Sbjct: 6   GNNRCRIVRSRTKLMNVLIG----KGKPREAHSIFNSLMDEGH--KPTLITYTTLVAALT 59

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
                     +   + +  +K    ++   IN  S++G+ + A  ++  M + G  P   
Sbjct: 60  RQKLFKSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTS 119

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + LI   G+AGK E A ++L+  ++ G+     +Y+ L+ A  N +N ++A  +   M
Sbjct: 120 TFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKM 179

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDD 424
            +  ++P   T N L  A  +  +  +  E++ +M +  + PN  T SI++   C+  + 
Sbjct: 180 VASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNM 239

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII-----GMCSRRYEKARTLNEHVLSFNSGRPQ-- 477
           V+    +  + KE GV+PNL +F  +I      M +   ++  TL E     N  RP   
Sbjct: 240 VDASRFVF-RMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEE----NGVRPDVV 294

Query: 478 ----IENKWTSLALM 488
               I N W+S   M
Sbjct: 295 TFSTIMNAWSSAGRM 309


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 2/325 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ML++      D   AF +   +  +GL+ D  +Y  LI    K G +D    +  +M
Sbjct: 475 TYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKM 534

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               ++P+   +  +I+G A AG +  A     +MR     P  + +NALI    +   V
Sbjct: 535 QKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKV 594

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            RA  VL +M+  +  + P+  T   +M+  A +G + +A E +  I +  +K    +Y 
Sbjct: 595 QRAVSVLDKMS--IAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYE 652

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++++ K  
Sbjct: 653 TLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED 712

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+   I +Y+S + AC  A + Q+A ++ E M  + LKP V T   LI          + 
Sbjct: 713 GVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRA 772

Query: 394 MEVLSDMKSLGLCPNTITYSILLVA 418
           ++   +MK  GL P+  +Y  L+ +
Sbjct: 773 LKCFEEMKLAGLKPDEASYHCLVTS 797



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 2/343 (0%)

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           V   ++E G K     Y  L+    K GKV     +  EM + GI+ N  TY  LI+G  
Sbjct: 425 VFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFI 484

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
                A AF  +  M    ++PDR ++N LI A  + G +DRA  +L +M  E   + P 
Sbjct: 485 HLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKER--MQPS 542

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
           +     +++  A AG +  A +   ++ +     T   Y   I+   +    + A SV D
Sbjct: 543 NRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLD 602

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M+  G+ P+E   + ++     +G +  AFE   + K  G+ + +  Y +L+ AC  + 
Sbjct: 603 KMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSG 662

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             Q AL +   M   K+       N LI        + +  +++  MK  G+ PN  TY+
Sbjct: 663 RMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYT 722

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             + AC +  D++    ++ +  + G+ PN+  +  +I   +R
Sbjct: 723 SYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 765



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 178/404 (44%), Gaps = 33/404 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +P P+   F +++   A   D   A      ++  G++ +  ++T+L+   A +  +
Sbjct: 255 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 314

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                   EM + G+E  + TY  LI G AK      A   +   ++K    + ++++ +
Sbjct: 315 RGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNI 374

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  QSG ++RA +++ EM  +    P+D                              
Sbjct: 375 IHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGF 434

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  I+ G L+      G+V +A  + K +    IK   + Y++ IN      D+  A +
Sbjct: 435 KPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFA 494

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           ++++M + G+ PD    + LI+     G ++ A  IL++ + + +     ++  ++   +
Sbjct: 495 IFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYA 554

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A + + AL+  + M+     PTV T NALI  L    ++ + + VL  M   G+ PN  
Sbjct: 555 VAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEH 614

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+I++       D+       ++ KE G+  ++ +++ ++  C
Sbjct: 615 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 658



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 168/399 (42%), Gaps = 37/399 (9%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
           T+ T+++L+S  A   DS+ A  + +  +      +  +Y+ +I    +SG         
Sbjct: 332 TIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELV 391

Query: 143 -------VDAMFEVFHEMVNA--------------------GIEPNVHTYGALIDGCAKA 175
                  +DA  +V+H M++                     G +P++ +YG L++   K 
Sbjct: 392 CEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKI 451

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G+VAKA      M S  +K +   ++ LI           AF +  EM      + PD  
Sbjct: 452 GKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEMLRS--GLQPDRA 509

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
               L++A    G +DRA  + + + K  ++ +   +   I   +  GD + A    D M
Sbjct: 510 IYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLM 569

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            + G +P  +  +ALI       KV+ A  +L +    GI+    +Y+ +M   + + + 
Sbjct: 570 RRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIMRGYAASGDI 629

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            KA E +  +K   LK  V     L+ A C   ++   + V  +M    +  NT  Y+IL
Sbjct: 630 GKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNIL 689

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           +    R+ DV     L+ Q KEDGV PN+  +   I  C
Sbjct: 690 IDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINAC 728



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 141/341 (41%), Gaps = 40/341 (11%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           + E+M R GL     +Y+      CK     +AI    +  K    P+   F  ++   A
Sbjct: 495 IFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYA 554

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
            + D + A   L L++ +G       Y  LI    +  KV     V  +M  AGI PN H
Sbjct: 555 VAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEH 614

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           TY  ++ G A +G + KAF  +  ++   +K D  ++  L+ AC +SG +  A  V  EM
Sbjct: 615 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 674

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
           + +  P +        L+   A  G V  A ++ K + +  +      YT  IN C + G
Sbjct: 675 SFQKIPRNT--FIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAG 732

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           D + A  V ++M   G+ P+                                   + +Y+
Sbjct: 733 DMQRAEKVIEEMVDVGLKPN-----------------------------------VKTYT 757

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +L+   +      +AL+ +E MK   LKP  ++ + L+T+L
Sbjct: 758 TLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSL 798



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 107/238 (44%), Gaps = 13/238 (5%)

Query: 27  EQLHSYNRLIRQ--------GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           E++   NR  R         G +   +D L+ M R G +     Y+A    + +  K  +
Sbjct: 537 ERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQR 596

Query: 79  EAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
                 K+      P   T+ ++M   A+S D   AF+    ++E+GLK D  +Y TL+ 
Sbjct: 597 AVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 656

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
            C KSG++ +   V  EM    I  N   Y  LIDG A+ G V +A      M+   V P
Sbjct: 657 ACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPP 716

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           +   + + I AC ++G + RA  V+ EM  +V  + P+  T   L+K  A     DRA
Sbjct: 717 NIHTYTSYINACCKAGDMQRAEKVIEEM-VDVG-LKPNVKTYTTLIKGWARVSLPDRA 772



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VP P + T+   ++ C  + D + A +V+  + + GLK + K YTTLI   A+    D  
Sbjct: 714 VP-PNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRA 772

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            + F EM  AG++P+  +Y  L+        V +     GI+
Sbjct: 773 LKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGII 814


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 191/430 (44%), Gaps = 15/430 (3%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H   +H ++ + + Y+  I    ++G + +   L + M   GL+   + Y +     C+ 
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR- 394

Query: 74  QKAIKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           +K +++ +          +V +P   T+  ++    SS D +GA+ +++ +  +G + + 
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPY--TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
            +YTTLI T  ++ +      V  EM   GI P++  Y +LI G +KA ++ +A      
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M    +KP+   + A I+   ++     A   + EM      V P+ +    L+      
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE--CGVLPNKVLCTGLINEYCKK 570

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
            +V  A   Y+ +    I G  + YT+ +N   +    + A  ++ +M  KG+ PD    
Sbjct: 571 EKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
             LI+     G ++ A  I  E   +G++  +I Y+ L+G    +   +KA EL + M  
Sbjct: 631 GVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             L P   T   +I   C    L +   +  +MK  GL P++  Y+ L+  C R +DVE 
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 750

Query: 428 GLMLLSQAKE 437
            + +    K+
Sbjct: 751 AITIFGTNKK 760



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 165/376 (43%), Gaps = 4/376 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +  L+      K+    +++L  +++  +      Y T++     SG +D  + +
Sbjct: 380 PQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNI 439

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM+ +G  PNV  Y  LI    +  +   A      M+ + + PD   +N+LI    +
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +D A   L EM    + + P+  T GA +     A +   A +  K + +  +    
Sbjct: 500 AKRMDEARSFLVEMVE--NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 270 EVYTIAIN-CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            + T  IN  C +    E ACS Y  M  +G++ D    + L++      KV+ A EI +
Sbjct: 558 VLCTGLINEYCKKEKVIE-ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFR 616

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E + +GI+  + SY  L+   S   N QKA  +++ M    L P V   N L+   C   
Sbjct: 617 EMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSG 676

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ K  E+L +M   GL PN +TY  ++    +  D+     L  + K  G++P+  ++ 
Sbjct: 677 EIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYT 736

Query: 449 CIIGMCSRRYEKARTL 464
            ++  C R  +  R +
Sbjct: 737 TLVDGCCRLNDVERAI 752



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 197/427 (46%), Gaps = 26/427 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ------ 74
           ++  +  YN LI    +  R+ E    L +M   GL      Y A      ++       
Sbjct: 483 IAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASAD 542

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K +KE  R   ++PN  L T  ++   C   K  E A    R + + G+  D K YT L+
Sbjct: 543 KYVKE-MRECGVLPNKVLCT-GLINEYCKKEKVIE-ACSAYRSMVDQGILGDAKTYTVLM 599

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K+ KVD   E+F EM   GI P+V +YG LI+G +K G + KA   +  M  + + 
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLT 659

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ +++N L+    +SG +++A ++L EM+  V  + P+ +T   ++     +G +    
Sbjct: 660 PNVIIYNMLLGGFCRSGEIEKAKELLDEMS--VKGLHPNAVTYCTIIDGYCKSGDL---A 714

Query: 255 EVYKMIHKYNIKG-TPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           E +++  +  +KG  P+  VYT  ++ C +  D E A +++    KKG        +ALI
Sbjct: 715 EAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG-TNKKGCASSTAPFNALI 773

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISV----GIISYSSLMGACSNAKNWQKALELYEHMKS 367
           ++    GK E   E+L    +           ++Y+ ++       N + A EL+  M++
Sbjct: 774 NWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQN 833

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             L PTV T  +L+       +  +   V  +  + G+ P+ I YS+++ A  ++     
Sbjct: 834 ANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTK 893

Query: 428 GLMLLSQ 434
            L+L+ Q
Sbjct: 894 ALVLVDQ 900



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/470 (21%), Positives = 199/470 (42%), Gaps = 49/470 (10%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           Q  +Y  LI    R+  + +  +LL +M+++ ++     Y      +C S   +  A+  
Sbjct: 381 QAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD-LDGAYNI 439

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            K +      P +  +  L+     +     A +VL+ ++E G+  D   Y +LI   +K
Sbjct: 440 VKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSK 499

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
           + ++D       EMV  G++PN  TYGA I G  +A + A A      MR   V P++V+
Sbjct: 500 AKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVL 559

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
              LI    +   V  A      M  +   +  D  T   LM       +VD A E+++ 
Sbjct: 560 CTGLINEYCKKEKVIEACSAYRSMVDQ--GILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +    I      Y + IN  S+ G+ + A S++D+M ++G+ P+ +  + L+     +G+
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE 677

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +E A E+L E   +G+    ++Y +++     + +  +A  L++ MK   L P       
Sbjct: 678 IEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTT 737

Query: 380 LITALCDGDQLPKTMEVL--------------------------SDMKSLGLC------- 406
           L+   C  + + + + +                           +++K+  L        
Sbjct: 738 LVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSF 797

Query: 407 -----PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                PN +TY+I++    ++ ++E    L  Q +   ++P ++ +  ++
Sbjct: 798 DRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLL 847



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 100/483 (20%), Positives = 191/483 (39%), Gaps = 31/483 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+++L+      K  E A  +L  +   G+  D   Y+ LI    K    DA   +
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            HEMV+ GI    + Y   I   +K G + KA   +  M +  + P    + +LI    +
Sbjct: 335 VHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR 394

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              V + +++L EM      + P   T G ++K   ++G +D A  + K +     +   
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISP--YTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +YT  I    Q   +  A  V  +M ++G+ PD    ++LI     A +++ A   L E
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+     +Y + +     A  +  A +  + M+   + P       LI   C  ++
Sbjct: 513 MVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEK 572

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +       M   G+  +  TY++L+    + D V+    +  + +  G+ P++  +  
Sbjct: 573 VIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGV 632

Query: 450 IIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 507
           +I   S+    +KA +                         ++ E +  G  P V + + 
Sbjct: 633 LINGFSKLGNMQKASS-------------------------IFDEMVEEGLTPNVIIYNM 667

Query: 508 VLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFG 565
           +LG        +  + L++ + V          C++IDG+ +      AF L +E    G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 566 IVP 568
           +VP
Sbjct: 728 LVP 730



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 148/348 (42%), Gaps = 30/348 (8%)

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA------- 179
           CK+   L+    +  ++D  ++V+  MV   +  +V TY  LI    +AG V        
Sbjct: 189 CKV---LLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLF 245

Query: 180 ---KAF--------GAYGIMRS---KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
              K F        GA  +  S   K + P +  ++ LI    +   ++ A  +L EM++
Sbjct: 246 KTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDS 305

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRARE-VYKMI-HKYNIKGTPEVYTIAINCCSQTG 283
               V  D+ T   L+         D A+  V++M+ H  NIK  P +Y   I   S+ G
Sbjct: 306 --LGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIK--PYMYDCCICVMSKEG 361

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
             E A +++D M   G+IP     ++LI+       V   +E+L E K + I +   +Y 
Sbjct: 362 VMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYG 421

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +++    ++ +   A  + + M +   +P V     LI       +    M VL +MK  
Sbjct: 422 TVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQ 481

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           G+ P+   Y+ L++   +   ++     L +  E+G+ PN   +   I
Sbjct: 482 GIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 108/230 (46%), Gaps = 11/230 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-- 94
           + G ++E   L ++M+ KGL+  D   +    + C     ++ A   F        S+  
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVP-DSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTA 767

Query: 95  -FNMLMSVCASSKDSEGAFQVLRLVQEAGL----KADCKLYTTLITTCAKSGKVDAMFEV 149
            FN L++       +E   +VL  + +       K +   Y  +I    K G ++A  E+
Sbjct: 768 PFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKEL 827

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           FH+M NA + P V TY +L++G  K G+ A+ F  +    +  ++PD ++++ +I A  +
Sbjct: 828 FHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLK 887

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIG---ALMKACANAGQVDRAREV 256
            G   +A  ++ +M A+    D   ++I    AL+   A  G+++ A +V
Sbjct: 888 EGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKV 937


>gi|358346655|ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503316|gb|AES84519.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 202/459 (44%), Gaps = 7/459 (1%)

Query: 67  FFNVCKSQKAIKEAFRF---FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
            +  C+  K  + A  F   +++  +P   ++  +++    S     AF +   +   G+
Sbjct: 363 LYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGI 422

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
             D    TT++    K GK     EVF  ++   + PN  TY AL+DG  K G++  A  
Sbjct: 423 SFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAEL 482

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
               M  ++V P+ + F+++I    + G + +A DVL EM      V P+ I    L+  
Sbjct: 483 VLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQ--RNVMPNTIVYAILIDG 540

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
              AG+ D A +  K +    ++ +  ++ I +N   + G  + A S+  DM  KG+ PD
Sbjct: 541 YFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPD 600

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V  ++LID     G   AA  I+QE K + I   +++Y++L+        +     +  
Sbjct: 601 IVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCS 659

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M  + L P   T N +I   C   +    +++L++MKS G+ PN +TY+IL+    +  
Sbjct: 660 RMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTG 719

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 483
            VE     L +      +P  +  K ++   SR  +  + L  H     SG       + 
Sbjct: 720 AVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYN 779

Query: 484 SLALMVYREAIV-AGTIPTVEVVSKVLGCLQLPYNADIR 521
           +L  +  R  +     +   E+V + +    + YNA IR
Sbjct: 780 TLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIR 818



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 180/399 (45%), Gaps = 40/399 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PTL T+  L++        E +  + + +   G+  D    ++++    + GK+     +
Sbjct: 319 PTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGIMPDVVTCSSILYGFCRHGKLTEAAVL 378

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF-----------------------GAYG 186
           F EM   G++PN  +Y  +I+   K+G+V +AF                       G + 
Sbjct: 379 FREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTVMDGLFK 438

Query: 187 IMRSK------------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
           + ++K            N+ P+ V ++AL+    + G ++ A  VL +M  E  P  P+ 
Sbjct: 439 VGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVLQKMEKEHVP--PNV 496

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           IT  +++   A  G + +A +V + + + N+     VY I I+   + G+ + A     +
Sbjct: 497 ITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVADDFCKE 556

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M  + +    V    L++     G+++ A  ++ +  ++GI   I++Y+SL+       N
Sbjct: 557 MKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGN 616

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCD-GDQLPKTMEVLSDMKSLGLCPNTITYS 413
              AL + + MK   ++  V   NALI  L   G   P+   V S M  LGL P+ ITY+
Sbjct: 617 QLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY--VCSRMIELGLAPDCITYN 674

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            ++     K   E  L +L++ K  G++PN V +  +IG
Sbjct: 675 TIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIG 713



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 173/422 (40%), Gaps = 74/422 (17%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L R GR+ E   L+ DM  KG+ D D V +A   +             +FK       
Sbjct: 574 NNLKRVGRMDEARSLIIDMYSKGI-DPDIVNYASLID------------GYFK------- 613

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
                         +   A  +++ ++E  ++ D   Y  LI    + GK D  + V   
Sbjct: 614 ------------EGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCSR 660

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+  G+ P+  TY  +I+     G+   A      M+S  + P+ V +N LI    ++GA
Sbjct: 661 MIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGA 720

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V++A   L EM   V    P  IT   L+KA + + + D+  ++++ +    ++ +  VY
Sbjct: 721 VEKAESALDEM--LVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVY 778

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I    + G    A  V D+M K+G+  D V  +ALI        VE A +   +   
Sbjct: 779 NTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFV 838

Query: 333 QGISVGIISYSSLMGACSNAK--------------------------------------- 353
            GI+  I +Y++L+G  SNA                                        
Sbjct: 839 DGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVG 898

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           N +K + L+  M +    PT+ T N LI+      ++ +  E+L+D+ + G  PN+ TY 
Sbjct: 899 NRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYD 958

Query: 414 IL 415
           IL
Sbjct: 959 IL 960



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 154/350 (44%), Gaps = 7/350 (2%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           ++  L+    + G++D    +  +M + GI+P++  Y +LIDG  K G    A      M
Sbjct: 568 IFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEM 627

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           + KN++ D V +NALI    + G  D  + V + M  E+  + PD IT   ++      G
Sbjct: 628 KEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCSRM-IELG-LAPDCITYNTIINTYCIKG 684

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           + + A ++   +  Y I      Y I I    +TG  E A S  D+M     +P  +   
Sbjct: 685 KTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHK 744

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            L+     + K +   +I ++    G+ + +  Y++L+         +KA  + + M   
Sbjct: 745 FLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKR 804

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDD 424
            +   + T NALI   C G  + K ++  S M   G+ PN  TY+ LL         ++ 
Sbjct: 805 GISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEM 864

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 474
           +E    L+S+  E G++PN   +  ++    R   + +T+  H+     G
Sbjct: 865 MEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKG 914



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 110/504 (21%), Positives = 214/504 (42%), Gaps = 47/504 (9%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
            F +L  + + GL  D      L+    + G V     V + +V+ G+  +V     LID
Sbjct: 181 GFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLID 240

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM------- 223
           G  +AG +++A          +VK D V +N L+ A  ++G + RA  +  E+       
Sbjct: 241 GYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDE 300

Query: 224 ----------NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
                       E+  + P  +T   L+ A      V+ +  +YK +    I   P+V T
Sbjct: 301 DRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGI--MPDVVT 358

Query: 274 ---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
              I    C   G    A  ++ +M + G+ P+ V  + +I+    +G+V  AF +  + 
Sbjct: 359 CSSILYGFCRH-GKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQM 417

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +GIS  I++ +++M         ++A E++E +  + L P   T +AL+   C   ++
Sbjct: 418 VVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKM 477

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                VL  M+   + PN IT+S ++    +K  +   + +L +  +  V+PN +++  +
Sbjct: 478 ELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAIL 537

Query: 451 IG-----------------MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREA 493
           I                  M SRR E++  + + +L+ N  R    ++  SL + +Y + 
Sbjct: 538 IDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLN-NLKRVGRMDEARSLIIDMYSKG 596

Query: 494 IVAGTIPTVEVVSKVLG-CLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP 552
           I    +    ++        QL   + ++E   +N  +  D +  + L   +   G+YDP
Sbjct: 597 IDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKN--IRFDVVAYNALIKGLLRLGKYDP 654

Query: 553 RAFSLLEEAASFGIVP-CVSFKEI 575
           R   +       G+ P C+++  I
Sbjct: 655 RY--VCSRMIELGLAPDCITYNTI 676



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 140/350 (40%), Gaps = 60/350 (17%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           GL      + TL+     SG V  +  ++ +M+  G+ P+V +   L+    K G +  A
Sbjct: 89  GLVPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLA 148

Query: 182 FGAYGIMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
            G    +R+ +V   D V +N +I    Q G VD+ F +L+EM      +  D IT   L
Sbjct: 149 LGY---LRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVK--RGLCFDSITCNIL 203

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           +K     G V                              Q  +W     V  ++   GV
Sbjct: 204 VKGYCRIGLV------------------------------QYAEW-----VMYNLVDGGV 228

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
             D + L+ LID    AG +  A E+++ +    + + I++Y++L+ A     +  +A  
Sbjct: 229 TKDVIGLNTLIDGYCEAGLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAES 288

Query: 361 LYEHM------------------KSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           L+  +                    IK L+PT+ T   LI A C    + ++  +   M 
Sbjct: 289 LFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMI 348

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             G+ P+ +T S +L    R   +    +L  +  E G+ PN V +  II
Sbjct: 349 MNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATII 398



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 127/286 (44%), Gaps = 17/286 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS------QKAIKEA 80
           +YN +I     +G+  + +D+L +M+  G++     Y+     +CK+      + A+ E 
Sbjct: 672 TYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEM 731

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               + VP P    F  L+   + S+ ++   Q+   +  +GL+    +Y TLIT   + 
Sbjct: 732 L-VMEFVPTPITHKF--LVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRL 788

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G       V  EMV  GI  ++ TY ALI G      V KA   Y  M    + P+   +
Sbjct: 789 GMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTY 848

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGALMKACANAGQVDRAREVY- 257
           N L+     +G ++   +   ++ +E++   + P+  T   L+      G   +   ++ 
Sbjct: 849 NTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHI 908

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
           +MI K     T + Y + I+  +++G    A  + +D+  KG IP+
Sbjct: 909 EMITK-GFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPN 953


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 171/363 (47%), Gaps = 4/363 (1%)

Query: 90  PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P+L ++N M++  C      + A +V+  + E+GLK +   YT L+    K G  +  F 
Sbjct: 464 PSLVSYNHMILGHCKKGC-MDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFN 522

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F +MV AGI P  +T+ ++I+G  K G+V++A         ++  P  + +N +I    
Sbjct: 523 MFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYV 582

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + GA+D A  V  EM      + P+ IT  +L+     + ++D A +++  + +  ++  
Sbjct: 583 KEGAIDSAESVYREMCRS--EISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELD 640

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             VY   I    +  D E AC  +  + + G+ P+ +  + +I    +   +EAA  + +
Sbjct: 641 ITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHK 700

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  N  I   +  Y+SL+           AL+LY  M    + P +   N LI  LC+  
Sbjct: 701 EMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHG 760

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           QL    ++L +M    + P  + Y+ L+    ++ +++    L  +  + G++P+   + 
Sbjct: 761 QLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYD 820

Query: 449 CII 451
            ++
Sbjct: 821 ILV 823



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 114/532 (21%), Positives = 214/532 (40%), Gaps = 60/532 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+  T+  ++  C    +   A ++   + ++ +  +  + T+LI      G V++   +
Sbjct: 290 PSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRL 349

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F E+V  G+ PNV  +  LI+ C+K G V KA   Y  M+   ++P   + N L+    +
Sbjct: 350 FDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRK 409

Query: 210 SGAVDRAFDVL------------------------AEMNAEVHPVD--------PDHITI 237
              ++ A+ +L                         ++N   +  D        P  ++ 
Sbjct: 410 QNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSY 469

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             ++      G +D A EV   I +  +K     YTI +    + GD E A +++D M  
Sbjct: 470 NHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVA 529

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G++P +   +++I+     G+V  A + L     Q      ++Y+ ++           
Sbjct: 530 AGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDS 589

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A  +Y  M   ++ P V T  +LI   C  +++   +++  DMK  GL  +   Y+ L+ 
Sbjct: 590 AESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIA 649

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477
              +  D+E      S+  E G+ PN +++  +I            LN H    N+  P 
Sbjct: 650 GFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPC 709

Query: 478 IENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 525
               +TSL            AL +Y E +  G +P + + + ++       N       +
Sbjct: 710 DLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLI-------NGLCNHGQL 762

Query: 526 ENLGVSADALKRSNLC-------SLIDG-FGEYD-PRAFSLLEEAASFGIVP 568
           EN G     +  +N+        +LI G F E +   AF L +E    G+VP
Sbjct: 763 ENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVP 814



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/407 (21%), Positives = 162/407 (39%), Gaps = 31/407 (7%)

Query: 78  KEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEG----------------AFQVL- 115
           + A RFFK V        T     +L+ + AS+ ++ G                A +VL 
Sbjct: 76  RSALRFFKQVETKGGFAKTADVLCLLLQILASNPETHGDAKHLLNKYVFGDSAPAAKVLV 135

Query: 116 ----RLVQEAGLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
                  +  G K +D +++  L+ +  ++ K+    E F  M+  G+ P V     L+ 
Sbjct: 136 ELLVECAERYGFKLSDSRVFNYLLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLT 195

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
              +   V  A   +  M  + +  D      L+ AC + G    A     +       +
Sbjct: 196 AMIRRNMVEDAHRLFDEMAERRIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKL 255

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
           D    +I  +++A      +D A ++ +   +     +   Y   I  C + G++  A  
Sbjct: 256 DAASYSI--VIQAVCRGSDLDLASKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALR 313

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           + D+M    V  +    ++LI      G V +A  +  E    G++  +  +S L+  CS
Sbjct: 314 LKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCS 373

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
              N +KA ELY  MK + L+PTV  +N L+      + L     +L      G+  + +
Sbjct: 374 KIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNLLENAYLLLDGAVENGIA-SVV 432

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMCSR 456
           TY+I+L+       V     L  +    G+ P+LV +   I+G C +
Sbjct: 433 TYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHMILGHCKK 479



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 11/209 (5%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIK 78
           ++S  + +Y  LI    +  ++   + + +DM+RKGL LD+  VY       CK Q  ++
Sbjct: 601 EISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDI-TVYATLIAGFCKMQD-ME 658

Query: 79  EAFRFF-KLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            A +FF KL+     P    +N+++S   +  + E A  + + +    +  D K+YT+LI
Sbjct: 659 NACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLI 718

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K GK+    +++ EM+  GI P++  Y  LI+G    GQ+  A      M   N+ 
Sbjct: 719 DGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNIT 778

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEM 223
           P  +++N LI    + G +  AF +  EM
Sbjct: 779 PTVLLYNTLIAGHFKEGNLQEAFRLHDEM 807



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 124/284 (43%), Gaps = 7/284 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P 88
           N L + GR+SE  D L    ++  +     Y+       K + AI  A   ++ +     
Sbjct: 544 NGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVK-EGAIDSAESVYREMCRSEI 602

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+  L++    S   + A ++   ++  GL+ D  +Y TLI    K   ++   +
Sbjct: 603 SPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFCKMQDMENACK 662

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F +++  G+ PN   Y  +I        +  A   +  M +  +  D  ++ +LI    
Sbjct: 663 FFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHKEMINNKIPCDLKIYTSLIDGLL 722

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  A D+ +EM      + PD      L+    N GQ++ A ++ K +   NI  T
Sbjct: 723 KEGKLSFALDLYSEM--LCRGIVPDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPT 780

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
             +Y   I    + G+ + A  ++D+M  KG++PD+     L++
Sbjct: 781 VLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYDILVN 824



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 41/82 (50%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +N+L++   +    E A ++L+ +    +     LY TLI    K G +   F +
Sbjct: 744 PDIFMYNVLINGLCNHGQLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRL 803

Query: 150 FHEMVNAGIEPNVHTYGALIDG 171
             EM++ G+ P+  TY  L++G
Sbjct: 804 HDEMLDKGLVPDDTTYDILVNG 825


>gi|449442096|ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
 gi|449490234|ref|XP_004158545.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
          Length = 823

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 181/372 (48%), Gaps = 3/372 (0%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           + S +N ++   A ++  E +F   + + ++G K D + Y +LIT     G     FE++
Sbjct: 229 SFSAYNRVIQYLAKAEKLEVSFCCFKKIHDSGFKVDTQTYNSLITLFLNKGLPYKAFEIY 288

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M  A    +  T+  +I   AK+G++  A   +  M+ K  +P + V+++L+ + G++
Sbjct: 289 ESMAGAECSLDASTFELMIPCLAKSGRLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMGKA 348

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D +  +  EM  ++  + P  +   +L+++   AG++D A +++  + +   K    
Sbjct: 349 GRLDTSMKIYMEM--QLLELRPSALMFVSLIESHVKAGKLDTALKLWDDMKRAGFKPNFG 406

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           +Y++ +   +++G  + A SV+ +M K G +P       L++    +G V+AA ++    
Sbjct: 407 LYSMVVESHAKSGKLDVAMSVFTEMEKAGFLPIPSTYCCLLEMQAASGHVDAAMKLYNSM 466

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            N G+ +G+ +Y+SL+   +N K    A ++   MK++    +VS  + L+  + +G  +
Sbjct: 467 TNAGLRLGLNTYTSLLTLLANKKLIDIAAKVLLEMKAMGFSVSVSASDVLMVYIKEGS-V 525

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              +  L  M S G+  N+     L  +C +K   E  + LL          +L+++  I
Sbjct: 526 DSALRWLQFMGSSGIRTNSFIIRQLFESCMKKGMYESAMPLLETYVNSAAKVDLILYTSI 585

Query: 451 IGMCSRRYEKAR 462
           +    R  E+ +
Sbjct: 586 LAHLVRCQEEQK 597



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 130/305 (42%), Gaps = 13/305 (4%)

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRS---KNVKPDRVV----FNALITACGQSGA 212
           PN   YG L DG  +     + F A  ++     +++  D  V    +N +I    ++  
Sbjct: 190 PNDECYGLLFDGLNQR----RDFDAIQLLFDEVVRDLSSDETVSFSAYNRVIQYLAKAEK 245

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           ++ +F    +++     VD    T  +L+    N G   +A E+Y+ +           +
Sbjct: 246 LEVSFCCFKKIHDSGFKVDTQ--TYNSLITLFLNKGLPYKAFEIYESMAGAECSLDASTF 303

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
            + I C +++G  + A  ++ +M +K   P +   S+L+D  G AG+++ + +I  E + 
Sbjct: 304 ELMIPCLAKSGRLDAAMKLFQEMKEKKYRPAQNVYSSLVDSMGKAGRLDTSMKIYMEMQL 363

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
             +    + + SL+ +   A     AL+L++ MK    KP     + ++ +     +L  
Sbjct: 364 LELRPSALMFVSLIESHVKAGKLDTALKLWDDMKRAGFKPNFGLYSMVVESHAKSGKLDV 423

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            M V ++M+  G  P   TY  LL        V+  + L +     G+   L  +  ++ 
Sbjct: 424 AMSVFTEMEKAGFLPIPSTYCCLLEMQAASGHVDAAMKLYNSMTNAGLRLGLNTYTSLLT 483

Query: 453 MCSRR 457
           + + +
Sbjct: 484 LLANK 488



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/285 (20%), Positives = 114/285 (40%), Gaps = 9/285 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P  + ++ L+     +   + + ++   +Q   L+    ++ +LI +  K+GK+D   ++
Sbjct: 333 PAQNVYSSLVDSMGKAGRLDTSMKIYMEMQLLELRPSALMFVSLIESHVKAGKLDTALKL 392

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           + +M  AG +PN   Y  +++  AK+G++  A   +  M      P    +  L+     
Sbjct: 393 WDDMKRAGFKPNFGLYSMVVESHAKSGKLDVAMSVFTEMEKAGFLPIPSTYCCLLEMQAA 452

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK--- 266
           SG VD A  +   M      +  +  T  +L+   AN   +D A +V   +         
Sbjct: 453 SGHVDAAMKLYNSMTNAGLRLGLN--TYTSLLTLLANKKLIDIAAKVLLEMKAMGFSVSV 510

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
              +V  + I    + G  + A      M   G+  +   +  L +     G  E+A  +
Sbjct: 511 SASDVLMVYI----KEGSVDSALRWLQFMGSSGIRTNSFIIRQLFESCMKKGMYESAMPL 566

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           L+   N    V +I Y+S++      +  QK   L   + + K K
Sbjct: 567 LETYVNSAAKVDLILYTSILAHLVRCQEEQKERYLMSILSTTKHK 611


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 103/436 (23%), Positives = 192/436 (44%), Gaps = 21/436 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKL 86
           N L R+GRI E + LL+ M   GL      Y      +CK      +   +++      +
Sbjct: 192 NGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHI 251

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +PN  + +  ++ S+C   + S+ A  +   +QE G+  D   Y ++I     SG+    
Sbjct: 252 IPNVVIYS-AIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  EM+   I P+V TY ALI+   K G+  +A   Y  M  + + P+ + ++++I  
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   +D A  +   M  +     P+ IT   L+     A ++D   E+   + +  + 
Sbjct: 370 FCKQNRLDAAEHMFYLMATK--GCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLV 427

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA--- 323
                Y   I+     GD   A  +  +M   G+ PD V    L+D     GK++ A   
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 324 FEILQEAKN--------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
           F+++Q++K          G+   + +Y+ L+    N   + +A ELYE M    + P   
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI 547

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T +++I  LC   +L +  ++   M S    PN +T++ L+    +   V+ GL L  + 
Sbjct: 548 TYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEM 607

Query: 436 KEDGVIPNLVMFKCII 451
              G++ N + +  +I
Sbjct: 608 GRRGIVANAITYITLI 623



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 197/436 (45%), Gaps = 25/436 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQKAIKEAFRFFKLVPN 89
           ++R  R    I L + MERK +     +Y       C     K   A+    +  KL  +
Sbjct: 89  VVRMERPDLVISLYQKMERKQI--RCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLH 146

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + TFN L+  +C   + SE A  +   + E   + +   +TTL+    + G++     
Sbjct: 147 PDVVTFNTLLHGLCVEDRVSE-ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVA 205

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVVFNALITAC 207
           +   M+  G++P   TYG ++DG  K G    A      M    ++ P+ V+++A+I + 
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSL 265

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G    A ++  EM  +   + PD  T  +++    ++G+   A ++ + + +  I  
Sbjct: 266 CKDGRHSDAQNLFTEMQEK--GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISP 323

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   IN   + G +  A  +YD+M  +G+IP+ +  S++ID      +++AA  + 
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                +G S  +I++++L+     AK     +EL   M    L    +T N LI      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER---KDDVEVGLMLLSQAKED----- 438
             L   +++L +M S GLCP+ +T   LL   C+    KD +E+   ++ ++K+D     
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM-FKVMQKSKKDLDASH 502

Query: 439 ---GVIPNLVMFKCII 451
              GV P++  +  +I
Sbjct: 503 PFNGVEPDVQTYNILI 518



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 163/365 (44%), Gaps = 8/365 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +F +L+    S      A      + + GL  D   + TL+       +V     +FH+M
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                 PNV T+  L++G  + G++ +A      M    ++P ++ +  ++    + G  
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDT 235

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A D+L +M  E+  + P+ +   A++ +    G+   A+ ++  + +  I   P+++T
Sbjct: 236 VSALDLLRKME-EISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI--FPDLFT 292

Query: 274 ---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
              + +  CS +G W  A  +  +M ++ + PD V  +ALI+     GK   A E+  E 
Sbjct: 293 YNSMIVGFCS-SGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM 351

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             +GI    I+YSS++           A  ++  M +    P + T N LI   C   ++
Sbjct: 352 LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRI 411

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              ME+L +M   GL  +T TY+ L+       D+   L LL +    G+ P++V    +
Sbjct: 412 DDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTL 471

Query: 451 I-GMC 454
           + G+C
Sbjct: 472 LDGLC 476



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 167/388 (43%), Gaps = 41/388 (10%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    ++G+  E  +L ++M  +G++     Y +     CK Q  +  A
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRLDAA 379

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F L+     +P L TFN L+     +K  +   ++L  + E GL AD   Y TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
               G ++A  ++  EM+++G+ P++ T   L+DG    G++  A   + +M+      D
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP---VDPDHITIGALMKACANAGQVDRA 253
                                          HP   V+PD  T   L+    N G+   A
Sbjct: 500 -----------------------------ASHPFNGVEPDVQTYNILISGLINEGKFLEA 530

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E+Y+ +    I      Y+  I+   +    + A  ++D M  K   P+ V  + LI+ 
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+V+   E+  E   +GI    I+Y +L+       N   AL++++ M S  + P 
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPD 650

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMK 401
             T+  ++T L   ++L + + +L  ++
Sbjct: 651 TITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 146/331 (44%), Gaps = 6/331 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  L+    +  + D +  ++ +M    I  +++++  LI       ++  A   +G + 
Sbjct: 82  FCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKIT 141

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
              + PD V FN L+        V  A ++  +M        P+ +T   LM      G+
Sbjct: 142 KLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT--CRPNVVTFTTLMNGLCREGR 199

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLS 308
           +  A  +   + +  ++ T   Y   ++   + GD   A  +   M +   +IP+ V  S
Sbjct: 200 IVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYS 259

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKS 367
           A+ID     G+   A  +  E + +GI   + +Y+S++ G CS+ + W  A +L + M  
Sbjct: 260 AIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGR-WSDAEQLLQEMLE 318

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
            K+ P V T NALI A     +  +  E+  +M   G+ PNTITYS ++    +++ ++ 
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
              +       G  PNL+ F  +I G C  +
Sbjct: 379 AEHMFYLMATKGCSPNLITFNTLIDGYCGAK 409



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 148/372 (39%), Gaps = 19/372 (5%)

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A D+ ++M     P+ P  +    LM       + D    +Y+ + +  I+     
Sbjct: 59  GLEDAIDLFSDM-LRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYS 116

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +TI I C        FA S +  +TK G+ PD V  + L+       +V  A  +  +  
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
                  ++++++LM          +A+ L + M    L+PT  T   ++  +C      
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTV 236

Query: 392 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC- 449
             +++L  M+ +  + PN + YS ++ +  +         L ++ +E G+ P+L  +   
Sbjct: 237 SALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 450 IIGMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 497
           I+G CS  R+  A         R ++  V+++N+       E K+   A  +Y E +  G
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE-AEELYDEMLPRG 355

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAF 555
            IP     S ++         D  E +   +     +       +LIDG+   +      
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 556 SLLEEAASFGIV 567
            LL E    G+V
Sbjct: 416 ELLHEMTETGLV 427


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 193/459 (42%), Gaps = 48/459 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKLVP 88
           L R G  +  +D    M  +G+     +Y+A    +CK      ++  +K+ F   ++ P
Sbjct: 190 LSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES-EMSP 248

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           + T +  +M++  C    D + A QV   + + G + +   Y+TLI     SG+V+  F+
Sbjct: 249 D-TFTYTSMILGHC-RKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFD 306

Query: 149 VFHEMV-----------------------------------NAGIEPNVHTYGALIDGCA 173
           +  EM+                                   N G EPNV+TY ALI G  
Sbjct: 307 LIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLC 366

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
            +G +  A G +  M    V P+ V +NALI    ++  +  AF VL  M    +   P+
Sbjct: 367 VSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR--NGCSPN 424

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +T   ++K     G   +A  V   + +         Y   I     +G+   A  + D
Sbjct: 425 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 484

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 352
            M   G  PDE   + LI       K+E+AF +  E  + G+    ++Y++L+ G C + 
Sbjct: 485 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 544

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           K    A  L EHMK    +P V T N LI  L   +      E+   M   G+ PN +TY
Sbjct: 545 K-LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + ++    +     + L + ++  E G +PNL+ +  +I
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 180/422 (42%), Gaps = 46/422 (10%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L+  C S +        L ++ ++GL+     Y+ L+   ++ G   A+ + +H M++ G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 158 IEPNVHTYGALIDGCAKAGQVA-----------------------------------KAF 182
           ++PN+  Y A+I+   K G VA                                    A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALM 241
             +  M  +  +P+ V ++ LI     SG V+ AFD++ EM   +H + P  H   G ++
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM--ILHGILPTAHTCTGPII 328

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKG 299
             C      D  R    M +K      P VYT    I+    +G  + A  ++  M++ G
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNK---GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDG 385

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           V P+ V  +ALI+      +++ AF +L      G S  I++Y+ ++       + +KA+
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            +  +M        + T N +I   CD       + +L  M+  G  P+  +Y+ L+   
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQ 477
            +   +E    L ++  +DG+ PN V +  +I G C   + + A +L EH +  +  RP 
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH-MKRSGCRPN 564

Query: 478 IE 479
           ++
Sbjct: 565 VQ 566



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 191/435 (43%), Gaps = 14/435 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L  +N +++      +   A  +++ V E+ +  D   YT++I    +   +D+  +V
Sbjct: 213 PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F++M   G EPN  TY  LI+G   +G+V +AF     M    + P        I A   
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  + A+ +  +M  +    +P+  T  AL+     +G +  A  ++  + +  +    
Sbjct: 333 MGCYEDAWRLFVDMKNK--GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNT 390

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   IN   +    ++A  V + M + G  P+ V  + +I      G  + A  ++  
Sbjct: 391 VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNN 450

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G S  +++Y++++    ++ N   AL + + M+    KP   +   LI   C   +
Sbjct: 451 MLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK 510

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +     + ++M   GLCPN +TY+ L+    + + ++    LL   K  G  PN+  +  
Sbjct: 511 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV 570

Query: 450 IIGMCSRR--YEKARTLNE---------HVLSFNSGRPQI-ENKWTSLALMVYREAIVAG 497
           +I   +++  +  A  L +         +V+++ +    + +N  TSLAL ++ + I  G
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 498 TIPTVEVVSKVLGCL 512
            +P +   S ++  L
Sbjct: 631 CLPNLLTYSSLIRAL 645



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 153/374 (40%), Gaps = 7/374 (1%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVC 102
           L  DM+ KG       Y A    +C S   +K A   F  +      P   T+N L+++ 
Sbjct: 342 LFVDMKNKGCEPNVYTYTALISGLCVS-GLLKVAIGLFHRMSRDGVFPNTVTYNALINIL 400

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
             ++  + AF VL L+   G   +   Y  +I      G       V + M+  G   N+
Sbjct: 401 VENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANL 460

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY  +I G   +G    A     +MR    KPD   +  LI    +   ++ AF +  E
Sbjct: 461 VTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNE 520

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  +   + P+ +T  AL+       ++D A  + + + +   +   + Y + I+  ++ 
Sbjct: 521 MVDD--GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
            ++  A  +   M ++G+ P+ V  +A+ID     G    A E+  +   QG    +++Y
Sbjct: 579 NNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTY 638

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           SSL+ A       ++A  L+  ++   L P   T   +I A     ++      L  M  
Sbjct: 639 SSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK 698

Query: 403 LGLCPNTITYSILL 416
            G  P   TY +L+
Sbjct: 699 AGCQPTLWTYGVLI 712



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 5/348 (1%)

Query: 110 GAFQVL--RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           G F  L  RLV      A  +    LI +C     +         +  +G+   +  Y A
Sbjct: 126 GTFAALARRLVDARRYAAAGRARIHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSA 185

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+   ++ G  A     Y  M S+ V+P+ +++NA+I A  + G V  A  ++ ++    
Sbjct: 186 LLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES- 244

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD  T  +++        +D A +V+  + K   +     Y+  IN    +G    
Sbjct: 245 -EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNE 303

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  +  +M   G++P     +  I      G  E A+ +  + KN+G    + +Y++L+ 
Sbjct: 304 AFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALIS 363

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
               +   + A+ L+  M    + P   T NALI  L +  ++     VL+ M   G  P
Sbjct: 364 GLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSP 423

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           N +TY+ ++       D +  +++++   + G   NLV +  II G C
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYC 471



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 164/424 (38%), Gaps = 35/424 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  LI    +  ++     L  +M   GL   +  Y A     CK +K +  A    + 
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK-LDTATSLLEH 555

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N+L+       +  GA ++ +++ E G+  +   YT +I    K+G 
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                E+F++M+  G  PN+ TY +LI    + G+V +A   +  +    + PD + +  
Sbjct: 616 TSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK 675

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA------------------- 243
           +I A   SG V+ AF+ L  M        P   T G L+K                    
Sbjct: 676 MIEAYIMSGKVEHAFNFLGRMIKA--GCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVV 733

Query: 244 --CANAGQVDRAREVYKM---IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
             C+   Q      V  M   + + +   + +V    ++  S  G W  A  +   M  +
Sbjct: 734 PNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQ 793

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD+   ++L+        V+ A  + +    QG  V +  Y  L+ A       ++A
Sbjct: 794 GLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEA 853

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
              +E+M      P       LI  L         ME L  M++    P+   Y+IL   
Sbjct: 854 RITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILARE 913

Query: 419 CERK 422
             +K
Sbjct: 914 ASKK 917


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 188/438 (42%), Gaps = 10/438 (2%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---Q 74
           AH+      SY  L+R    + R  + + LL DM+  G+      Y      +C +    
Sbjct: 106 AHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVD 165

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           KA++      +    P +  ++ L+     +   E   +V   +   G++ D  +YT LI
Sbjct: 166 KAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLI 225

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +  + GKV    +V  +M+  G+EPNV TY  LI+   K G V +A      M  K V 
Sbjct: 226 DSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVA 285

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
            D V +N LIT       +D A  +L EM      V+P+ +T  +++      G++ +A 
Sbjct: 286 LDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAF 345

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           +V  M+ +         + + I    +    + A  + D+M   G+ PD    S LI+  
Sbjct: 346 QVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGF 405

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPT 373
               +V+ A  +L + +  GI   ++ Y  L+ A       ++A   ++ M K+ KL   
Sbjct: 406 CKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLD-- 463

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           V   + +I   C         E L  M   GL P+++TYS+L+       D+     +L 
Sbjct: 464 VVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLK 523

Query: 434 QAKEDGVIPNLVMFKCII 451
           Q    G +P++ +F  +I
Sbjct: 524 QMTASGFVPDVAVFDSLI 541



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 194/461 (42%), Gaps = 46/461 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           NRL+R   + E   LL  +        D V Y+     +C+    +  A    +++ +  
Sbjct: 54  NRLLRLVPLPESPALLSSLPSV----RDAVSYNTVLAALCRQGGCLDAALFLLRVMAHET 109

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PT  ++  LM    + + +  A  +LR +Q +G++ D   Y TLI     +  VD   E
Sbjct: 110 RPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVE 169

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM  +GIEPNV  Y  L+ G  KAG+       +  M  + ++PD V++  LI +  
Sbjct: 170 LLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLC 229

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V +A  V+ +M      ++P+ +T   L+ +    G V  A  +   + +  +   
Sbjct: 230 REGKVKKATQVMDKMME--RGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALD 287

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMT--KKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
              Y   I   S   + + A  + ++M   +  V P+ V  +++I      G++  AF++
Sbjct: 288 AVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQV 347

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
                  G +  +++++ L+G        +KA+EL + M S  L+P   T + LI   C 
Sbjct: 348 RDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCK 407

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE------------------------- 420
             Q+ +   +LS M+  G+ P  + Y  LL A CE                         
Sbjct: 408 MWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKNCKLDVVAY 467

Query: 421 --------RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
                   R  D +     L    ++G+IP+ V +  +I M
Sbjct: 468 STMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINM 508



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 172/371 (46%), Gaps = 13/371 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           + L R+G++ +   +++ M  +GL      Y+    ++CK + ++KEA      +    +
Sbjct: 226 DSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCK-EGSVKEAMSLRNNMLEKGV 284

Query: 93  S----TFNMLMSVCASSKDSEGAFQVLR--LVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +    T+N L++  +   + + A  +L   +  E  ++ +   + ++I    K+G++   
Sbjct: 285 ALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQA 344

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           F+V   M   G   N+ T+  LI G  +  +V KA      M S  ++PD   ++ LI  
Sbjct: 345 FQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILING 404

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   VDRA  +L++M  +   ++P+ +    L+ A    G +++AR  +  +HK N K
Sbjct: 405 FCKMWQVDRAESLLSKMRRD--GIEPELVHYIPLLAALCEQGMMEQARNFFDEMHK-NCK 461

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+  I+   +  D + A      M  +G+IPD V  S LI+   ++G + AA  +
Sbjct: 462 LDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERV 521

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM--KSIKL-KPTVSTMNALITA 383
           L++    G    +  + SL+       + +K LEL   M  K I L    +ST+   + A
Sbjct: 522 LKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTIYTCLVA 581

Query: 384 LCDGDQLPKTM 394
             +G  L +++
Sbjct: 582 NNEGKALLQSV 592



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 103/257 (40%), Gaps = 21/257 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L+R  ++ + ++L+++M   GL      Y       CK  +  +      K+  +   P 
Sbjct: 370 LLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPE 429

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L  +  L++        E A      + +   K D   Y+T+I    +     +  E   
Sbjct: 430 LVHYIPLLAALCEQGMMEQARNFFDEMHK-NCKLDVVAYSTMIHGACRLRDRKSAEEFLK 488

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M++ G+ P+  TY  LI+  A +G +  A      M +    PD  VF++LI   G  G
Sbjct: 489 HMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKG 548

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITI-----------GALMKAC------ANAGQVDRAR 254
             ++  +++ EM A+   +D   I+             AL+++        + G V  + 
Sbjct: 549 DTEKVLELIREMTAKDIALDSKIISTIYTCLVANNEGKALLQSVPGFDTEVSKGAVISSH 608

Query: 255 EVYKMIHKYNIKGTPEV 271
           E+  M+HK   K  P V
Sbjct: 609 ELTNMLHKLCNKVEPAV 625


>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 706

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 186/452 (41%), Gaps = 30/452 (6%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100
           +  CI L+E  + K      K     +   C S    +      +      +  FNML+ 
Sbjct: 26  LERCIGLIEKWDLKMNGYTYKCLVQAYLRSCDSDNGFRVYLEMKRKGYTLDIFAFNMLLD 85

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
             A  +  + AF+V   +++   + D   YT +I    + GK+D    +F EM+N G  P
Sbjct: 86  ALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESLALFEEMLNKGCSP 145

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT---ACGQSGAVDRAF 217
           N+  Y  +I   A +  V K    +  M  KN +P+   ++ ++T   A GQ   +D+  
Sbjct: 146 NLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLAAEGQLHKLDKVV 205

Query: 218 DVLAE-MN-----------------AEVHPV---------DPDHITIGALMKACANAGQV 250
           ++  + MN                 +E H +           D     +++++  NAG+ 
Sbjct: 206 ELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACLSMLESLCNAGKT 265

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
             A ++   IH+  I     +Y        +         +Y+ M   G +PD    + L
Sbjct: 266 VEAIDLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNIL 325

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I   G AGKV  A +I +E +N      IISY+SL+       +  +A   +  M+   L
Sbjct: 326 ISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGL 385

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P V T + LI      D++     +  +M + G  PN +TY+ILL   ER       + 
Sbjct: 386 NPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVD 445

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 462
           L ++ K+ G+ P+ + +  +  + S  + K R
Sbjct: 446 LYAKLKQQGLTPDSITYSVLERLQSGSHRKLR 477



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 108/525 (20%), Positives = 210/525 (40%), Gaps = 52/525 (9%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+  L+     S DS+  F+V   ++  G   D   +  L+   AK  KVD  F+VF +M
Sbjct: 44  TYKCLVQAYLRSCDSDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDM 103

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                EP+ +TY  +I    + G++ ++   +  M +K   P+ + +N +I A   S  V
Sbjct: 104 KKKHCEPDEYTYTIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMV 163

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D+   + ++M  +     P+  T   ++   A  GQ+ +  +V ++  KY  +    +Y 
Sbjct: 164 DKTILLFSKMMEK--NCRPNEFTYSVILTLLAAEGQLHKLDKVVELSRKYMNRS---IYA 218

Query: 274 IAINCCSQTGD-----------WEF------------------------ACSVYDDMTKK 298
             +   ++ G            W +                        A  +   + +K
Sbjct: 219 YLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACLSMLESLCNAGKTVEAIDLLGKIHEK 278

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+  D +  + +    G   ++   +++ ++ K  G    I +Y+ L+ +   A    +A
Sbjct: 279 GINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEA 338

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           ++++E +++   KP + + N+LI  L     L +      +M+  GL P+ +TYS L+  
Sbjct: 339 IKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIEC 398

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQI 478
             + D VE+   L  +   +G  PN+V +  ++    R    A  ++ +      G    
Sbjct: 399 FGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPD 458

Query: 479 ENKWTSLALM---VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 535
              ++ L  +    +R+  V    P    V   L         DIR  L  + G +A   
Sbjct: 459 SITYSVLERLQSGSHRKLRVRRKNPITGWVVSPLRYFLKQLQGDIRRSLRPH-GNTATPA 517

Query: 536 KRSNLCSLI--------DGFGEYDPRAFSLLEEAASFGIVPCVSF 572
            RS  C+             G +  +  S++ EA  F  V C S+
Sbjct: 518 SRSKSCNFFFLSTSLTSSCQGVFTNQIHSVIPEAMQFSRVNCASW 562



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 160/359 (44%), Gaps = 14/359 (3%)

Query: 30  HSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++Y  +IR     G++ E + L E+M  KG       Y+     +  S+   K    F K
Sbjct: 113 YTYTIMIRMTGRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSK 172

Query: 86  LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-ADCKLYTTLITTCAKSG 141
           ++     P   T+++++++ A    +EG    L  V E   K  +  +Y  L+ T  K G
Sbjct: 173 MMEKNCRPNEFTYSVILTLLA----AEGQLHKLDKVVELSRKYMNRSIYAYLVRTLNKLG 228

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
                  +F  M +     +     ++++    AG+  +A    G +  K +  D +++N
Sbjct: 229 HASEAHRLFCNMWSYHDRGDRDACLSMLESLCNAGKTVEAIDLLGKIHEKGINTDTIMYN 288

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            + TA G+   +   +D+  +M  +  P+ PD  T   L+ +   AG+V  A ++++ + 
Sbjct: 289 TVFTALGRLKQISHLYDLYEKMKLD-GPL-PDIFTYNILISSFGRAGKVYEAIKIFEELE 346

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
             + K     Y   INC  + GD + A   + +M +KG+ PD V  S LI+  G   KVE
Sbjct: 347 NSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVE 406

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            A  +  E   +G    I++Y+ L+     +    +A++LY  +K   L P   T + L
Sbjct: 407 MACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYSVL 465


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 219/480 (45%), Gaps = 58/480 (12%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +  +H Y+ L   GR  E   + ++M R+GL+     +++   ++CK +++ KEA   F 
Sbjct: 346 TAMIHGYSCL---GRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRS-KEAAEIFH 401

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAF----QVLRLVQEAGLKADCKLYTTLITTC 137
            +      P + ++++L+   A+    EG F     +   + + G+ AD   +  LI   
Sbjct: 402 SIATKGHKPDIISYSILLHGYAT----EGRFVDMNNLFHSMTDNGIVADSHCFNILINAH 457

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
           AK G +D    +F EM   G+ PNV TY  +I    + G++A A      M S  +KP+ 
Sbjct: 458 AKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNT 517

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           VV+++LI      G + +A ++++EM  +  P  P+     +++ +  N G+V  A++V+
Sbjct: 518 VVYHSLIQGFCTHGDLIKAKELVSEMMDQGIP-RPNITFFSSIIHSLCNEGRVMNAQDVF 576

Query: 258 KMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI---- 311
            ++   +I   P+++T    I+     G  + A  V D M   G  PD V  S LI    
Sbjct: 577 NLV--IHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYF 634

Query: 312 -------------------------------DFAGHAGKVEAAFEILQEAKNQGISVGII 340
                                          D    AG+  AA ++  E    G ++ I 
Sbjct: 635 KSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSIS 694

Query: 341 SYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           +Y+ ++ G C N     +A+ L+  + ++ LK  ++ +N +I AL    +  +  ++ + 
Sbjct: 695 TYTIILQGLCRN-NCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFAS 753

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           + + GL PN  TY ++++   ++  VE   ++ S  ++ G  P+  +   II M  ++ E
Sbjct: 754 VSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGE 813



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 154/327 (47%), Gaps = 9/327 (2%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P   ++N ++ S+C  S+  E    +LR+ +  G   D   YT +I      G++     
Sbjct: 234 PDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACN 293

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F+EMV  G+ PNV TY +++    KA  + KA      M   +++PD V + A+I    
Sbjct: 294 LFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYS 353

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
             G    A  +  EM  E   + PD +T  +LM +     +  R++E  ++ H    KG 
Sbjct: 354 CLGRWKEAAKMFKEMTRE--GLIPDIVTFNSLMDSLC---KHKRSKEAAEIFHSIATKGH 408

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P++  Y+I ++  +  G +    +++  MT  G++ D    + LI+     G ++ A  
Sbjct: 409 KPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALL 468

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           I  E + QG+S  +++Y++++ A         A+E    M SI LKP     ++LI   C
Sbjct: 469 IFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFC 528

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITY 412
               L K  E++S+M   G+    IT+
Sbjct: 529 THGDLIKAKELVSEMMDQGIPRPNITF 555



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 118/493 (23%), Positives = 210/493 (42%), Gaps = 35/493 (7%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           ++VP  T+ T+ +LM  C  ++  +        +  AGL+ D  +  T +     + + D
Sbjct: 159 RVVP-LTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTD 217

Query: 145 -AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM-RSKNVKPDRVVFNA 202
            A+  + H M   G  P+  +Y  +I       +  +A      M +     PD V +  
Sbjct: 218 EALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTM 277

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I      G + +A ++  EM  +   V P+ +T  +++ A   A  +D+A  V + +  
Sbjct: 278 VIHGLFMEGEISKACNLFNEMVQK--GVVPNVVTYNSIVHALCKARAMDKAELVLRQMFD 335

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
            +I+     YT  I+  S  G W+ A  ++ +MT++G+IPD V  ++L+D      + + 
Sbjct: 336 NSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKE 395

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A EI      +G    IISYS L+   +    +     L+  M    +       N LI 
Sbjct: 396 AAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILIN 455

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           A      + + + + ++M+  G+ PN +TY+ ++ A  R   +   +  LSQ    G+ P
Sbjct: 456 AHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKP 515

Query: 443 NLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 500
           N V++  +I G C+     KA+ L   ++     RP I   ++S+   +  E  V     
Sbjct: 516 NTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNI-TFFSSIIHSLCNEGRV----- 569

Query: 501 TVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSL 557
                           NA     LV ++G   D        SLIDG+   G+ D +AF +
Sbjct: 570 ---------------MNAQDVFNLVIHIGDRPDIF---TFNSLIDGYCLVGKMD-KAFGV 610

Query: 558 LEEAASFGIVPCV 570
           L+   S G  P V
Sbjct: 611 LDAMVSAGTEPDV 623



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/398 (19%), Positives = 170/398 (42%), Gaps = 16/398 (4%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFR 82
           H +N LI    ++G + E + +  +M  +G+      Y      +C+  +   A+++  +
Sbjct: 448 HCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQ 507

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG 141
              +   P    ++ L+    +  D   A +++  + + G+ + +   ++++I +    G
Sbjct: 508 MISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEG 567

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +V    +VF+ +++ G  P++ T+ +LIDG    G++ KAFG    M S   +PD V ++
Sbjct: 568 RVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYS 627

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI    +SG +D    +  EM  +   V P  +T   ++     AG+   A+   KM H
Sbjct: 628 TLINGYFKSGRIDDGLILFREMLCK--RVKPTTVTYSLVLDGLFRAGRTSAAK---KMFH 682

Query: 262 KYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
           +    GT      YTI +    +    + A +++  +    +  +   L+ +I       
Sbjct: 683 EMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVK 742

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           + E A ++       G+     +Y  ++       + ++A  ++  M+     P+   +N
Sbjct: 743 RREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLN 802

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            +I  L    ++ K    +S +    +     T S+L+
Sbjct: 803 DIIRMLLQKGEIVKAGYYMSKVDGTIISLEASTTSLLI 840



 Score = 45.4 bits (106), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 45/231 (19%), Positives = 96/231 (41%), Gaps = 8/231 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT- 91
           N   + GRI + + L  +M  K +      Y      + ++ +       F +++ + T 
Sbjct: 631 NGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTA 690

Query: 92  --LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
             +ST+ +++     +  ++ A  +   +    LK +  +  T+I    K  + +   ++
Sbjct: 691 MSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDL 750

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  +  +G+ PN  TYG +I    K G V +A   +  M      P   + N +I    Q
Sbjct: 751 FASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQ 810

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
            G + +A   +++++  +  ++    T   L+   A+ G   R RE  K +
Sbjct: 811 KGEIVKAGYYMSKVDGTIISLEAS--TTSLLISLFASKG---RYREQIKFL 856


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 176/403 (43%), Gaps = 38/403 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    F+ L SV       E A Q    + +  +    +     +   +K+G+ D   + 
Sbjct: 60  PGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDF 119

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +MV AGI P V TY  +I    K G +  A   +  M+   + PD V +N LI   G+
Sbjct: 120 FRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGK 179

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D +  +  EM  +    +PD IT  AL+ +      + RA E ++ +   ++K   
Sbjct: 180 IGLLDESVCLFEEM--KFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNV 237

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  I+   + G  + A   + DMT+ G++P+E   S+LID    AG +  AF +  E
Sbjct: 238 ISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADE 297

Query: 330 AKNQGISVGIISYSSLM-GACSNA----------------------------------KN 354
              + + + I++Y++L+ G C                                     ++
Sbjct: 298 MLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRS 357

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             KA+EL+  M+   +KP +     ++  LC   +L +   ++++MK  G+  N + Y+ 
Sbjct: 358 MDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTT 417

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
           L+ A  +  +    + LL + ++ G    +V F  +I G+C R
Sbjct: 418 LMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKR 460



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 186/424 (43%), Gaps = 9/424 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-----SQKAIKEAFRFFKLV 87
           +RL + G      D   DM   G+      Y+    +VCK     + +++ E  +  K+ 
Sbjct: 105 HRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMK--KMG 162

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + T+N L+         + +  +   ++  G + D   Y  LI +  K   +   F
Sbjct: 163 LTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAF 222

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E F EM +  ++PNV +Y  LID   K G +  A   +  M    + P+   +++LI A 
Sbjct: 223 EFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDAN 282

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++G +  AF +  EM  E   VD + +T   L+      G ++ A E+++ + K  +  
Sbjct: 283 CKAGNLGEAFMLADEMLQE--HVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTP 340

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
             + YT  I+   +    + A  ++++M +K + PD +    ++       K+E    I+
Sbjct: 341 NLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIM 400

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E K  GI    + Y++LM A   A N  +A+ L E M+ +  + TV T  ALI  LC  
Sbjct: 401 TEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKR 460

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             + + +     M    L PN   Y+ L+    + + +     L  + ++  +IP+ + +
Sbjct: 461 GLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAY 520

Query: 448 KCII 451
             +I
Sbjct: 521 TAMI 524



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 198/438 (45%), Gaps = 17/438 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + +YN +I    ++G +     L E M++ GL   D V +    +       + E+
Sbjct: 128 IAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTP-DIVTYNTLIDGYGKIGLLDES 186

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F+ +      P + T+N L++     K    AF+  R +++  LK +   Y+TLI  
Sbjct: 187 VCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDA 246

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G +    + F +M   G+ PN  TY +LID   KAG + +AF     M  ++V  +
Sbjct: 247 LCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLN 306

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +  L+    + G ++ A ++   M      V P+     AL+        +D+A E+
Sbjct: 307 IVTYTTLLDGLCEEGMMNEAEELFRAMGKA--GVTPNLQAYTALIHGHIKVRSMDKAMEL 364

Query: 257 YKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           +  + + +IK  P++    TI    CS++   E    +  +M + G+  + V  + L+D 
Sbjct: 365 FNEMREKDIK--PDILLWGTIVWGLCSES-KLEECKIIMTEMKESGIGANPVIYTTLMDA 421

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG    A  +L+E ++ G  V ++++ +L+         Q+A+  +  M    L+P 
Sbjct: 422 YFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPN 481

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           V+   ALI  LC  + +    ++  +M+   + P+ I Y+ ++    +  + +  L + +
Sbjct: 482 VAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRN 541

Query: 434 QAKEDGVIPNLVMFKCII 451
           +  E G+  +L  +  ++
Sbjct: 542 KMMEMGIELDLYAYTSLV 559



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 172/391 (43%), Gaps = 13/391 (3%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D+   + SY+ LI    ++G +   I    DM R GLL  +  Y +     CK+   + E
Sbjct: 232 DLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGN-LGE 290

Query: 80  AF----RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           AF       +   +  + T+  L+  +C     +E A ++ R + +AG+  + + YT LI
Sbjct: 291 AFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNE-AEELFRAMGKAGVTPNLQAYTALI 349

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K   +D   E+F+EM    I+P++  +G ++ G     ++ +       M+   + 
Sbjct: 350 HGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIG 409

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
            + V++  L+ A  ++G    A ++L EM      V    +T  AL+      G V  A 
Sbjct: 410 ANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTV--VTFCALIDGLCKRGLVQEAI 467

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
             +  +  ++++    VYT  I+   +      A  ++D+M  K +IPD++  +A+ID  
Sbjct: 468 YYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGN 527

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G  + A  +  +    GI + + +Y+SL+   S     Q+A +    M    + P  
Sbjct: 528 LKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDE 587

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +    L+    +   + + +E+ +++   GL
Sbjct: 588 TLCTRLLRKHYELGNIDEAIELQNELVEKGL 618



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 137/309 (44%), Gaps = 9/309 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVPN 89
           L  +G ++E  +L   M + G+    + Y A      K  +++ +A   F     K +  
Sbjct: 317 LCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKV-RSMDKAMELFNEMREKDIKP 375

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
             L    ++  +C+ SK  E    ++  ++E+G+ A+  +YTTL+    K+G       +
Sbjct: 376 DILLWGTIVWGLCSESKLEECKI-IMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINL 434

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM + G E  V T+ ALIDG  K G V +A   +G M   +++P+  V+ ALI    +
Sbjct: 435 LEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCK 494

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +  A  +  EM  +   + PD I   A++      G    A  +   + +  I+   
Sbjct: 495 NNCIGDAKKLFDEMQDK--NMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDL 552

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  +   SQ G  + A     +M  KG+IPDE   + L+      G ++ A E+  E
Sbjct: 553 YAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNE 612

Query: 330 AKNQGISVG 338
              +G+  G
Sbjct: 613 LVEKGLIHG 621


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 171/352 (48%), Gaps = 7/352 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +PT+ TF ++M       + + A  +LR + + G   +  +Y  LI   +++ +V+   +
Sbjct: 197 SPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMK 256

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   G EP+V T+  +I G  KAG++ +A   +  M  ++   D ++   L+    
Sbjct: 257 LLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLC 316

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV-YKMIHKYNIKG 267
           + G VD A  +L+++       +P+ +    L+     +G+ + A+++ YK +     + 
Sbjct: 317 RMGKVDEARAMLSKI------PNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEP 370

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               + I I+   + G    A    D+M KKG  P+ +  + LID     G  E A +++
Sbjct: 371 DAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVV 430

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                +G+S+  + Y+ L+GA       Q AL++Y  M S   KP + T N+LI  LC  
Sbjct: 431 NSMSAKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKN 490

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           D++ + + +  DM   G+  NT+TY+ L+ A  R + ++    L+ + +  G
Sbjct: 491 DKMEEALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRG 542



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 177/419 (42%), Gaps = 41/419 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L + GRI E   L + M  +       +       +C+  K + EA      +PNP    
Sbjct: 280 LCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGK-VDEARAMLSKIPNPNTVL 338

Query: 95  FNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +N L++    S   E A  +L + +  AG + D   +  +I    K G + +  E   EM
Sbjct: 339 YNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMIDGLCKKGYLVSALEFLDEM 398

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           V  G EPNV TY  LIDG  K G   +A      M +K +  + V +N LI A  + G +
Sbjct: 399 VKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKI 458

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGTPEVY 272
             A  +  EM+++     PD  T  +L+   C N    D+  E                 
Sbjct: 459 QDALQMYGEMSSK--GCKPDIYTFNSLIYGLCKN----DKMEE----------------- 495

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
                          A  +Y DM  +GVI + V  + LI        ++ A +++ E + 
Sbjct: 496 ---------------ALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRF 540

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G  +  I+Y+ L+ A       +K L L E M   ++ P++++ N LI + C   ++  
Sbjct: 541 RGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVND 600

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            ++ L DM   GL P+ +TY+ L+    +    +  L L +  +  G+ P+ V +  +I
Sbjct: 601 ALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLI 659



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 135/360 (37%), Gaps = 42/360 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L ++G +   ++ L++M +KG       Y       CK Q   +EA +    +    LS 
Sbjct: 382 LCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCK-QGHFEEASKVVNSMSAKGLSL 440

Query: 95  ----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               +N L+         + A Q+   +   G K D   + +LI    K+ K++    ++
Sbjct: 441 NTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLY 500

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M+  G+  N  TY  LI    +   + +A    G MR +    D + +N LI A  ++
Sbjct: 501 RDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKT 560

Query: 211 GAVDRAFDVLAEM-NAEVHP--------------------------------VDPDHITI 237
           GA ++   ++ +M   E+ P                                + PD +T 
Sbjct: 561 GATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTY 620

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            +L+      G+   A  ++  +    I      Y   I+     G +  AC +      
Sbjct: 621 NSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVS 680

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQ 356
            G IP+E+  S LI++          F IL    N G  +  II + S +G C     WQ
Sbjct: 681 NGFIPNEITWSILINYFVKNNSDSEQFTILM--GNWGFWLAAIIRHVSSIG-CIAIFMWQ 737



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 7/228 (3%)

Query: 240 LMKACANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           +M+    AG   +A R +  M   Y  + T + Y + +         + A +V+ DM  +
Sbjct: 135 IMRYYGKAGLPGQATRLLLDMWGVYCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSR 194

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ P       ++       +V++A  +L++    G     I Y  L+ A S      +A
Sbjct: 195 GISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEA 254

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           ++L E M  +  +P V T N +I  LC   ++ +  ++   M       + +    L+  
Sbjct: 255 MKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHG 314

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 464
             R   V+    +LS+       PN V++  +I   + S R+E+A+ L
Sbjct: 315 LCRMGKVDEARAMLSKIPN----PNTVLYNTLINGYVVSGRFEEAKDL 358



 Score = 39.3 bits (90), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI+     G   +C+ L+E M  + +       +    + C++ K + +A +F + 
Sbjct: 549 TYNGLIKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGK-VNDALQFLRD 607

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N L++        + A  +   +Q  G+  D   Y TLI+     G 
Sbjct: 608 MIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGL 667

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
            +   ++  + V+ G  PN  T+  LI+   K    ++ F
Sbjct: 668 FNDACQLLFKGVSNGFIPNEITWSILINYFVKNNSDSEQF 707


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/442 (23%), Positives = 197/442 (44%), Gaps = 25/442 (5%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +LD D       +  A     C S  A+  A  F +
Sbjct: 40  VREGTLRPEEAHDLLDELQRRGTPVLDRDLNGFLAALARAPSSAACGSGPALAVAL-FNR 98

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ D  + + L+   
Sbjct: 99  AASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGF 158

Query: 138 AKSGKVDAMFEV-FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--K 194
            ++ + D   ++  H     G  P+V +Y  L+      G+  +A     +M        
Sbjct: 159 CEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCS 218

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V +N +I    + G V++A D+  EM     P  PD +T  +++ A   A  +D+A 
Sbjct: 219 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP--PDLVTYSSVVHALCKARAMDKAE 276

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
              + +    +      Y   I   S TG W+ A  V+ +M ++ ++PD V L+ L+   
Sbjct: 277 AFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSL 336

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              GK++ A ++      +G +  + SY+ ++   +         +L++ M    + P +
Sbjct: 337 CKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDI 396

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  +   +Q
Sbjct: 397 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQ 456

Query: 435 AKEDGVIPNLVMFKCII-GMCS 455
             + GV+P+   + C+I G C+
Sbjct: 457 MIDQGVVPDKYAYHCLIQGFCT 478



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 175/416 (42%), Gaps = 38/416 (9%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           V +P +  +N ++       D   A  + + + + G+  D   Y++++    K+  +D  
Sbjct: 216 VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKA 275

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
                +MVN G+ P+  TY  LI G +  GQ  +A   +  MR +++ PD V  N L+ +
Sbjct: 276 EAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGS 335

Query: 207 CGQSGAVDRAFDVLAEM-----NAEVHP----------------------------VDPD 233
             + G +  A DV   M     N +V                              + PD
Sbjct: 336 LCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 395

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T   L+KA AN G +D+A  ++  +  + +K     Y   I    + G  + A   ++
Sbjct: 396 IYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFN 455

Query: 294 DMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            M  +GV+PD+     LI  F  H G +  A E++ E  N G+ + I+ + S++      
Sbjct: 456 QMIDQGVVPDKYAYHCLIQGFCTH-GSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKL 514

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
                A  +++   ++ L P     N L+   C   ++ K + V   M S G+ PN + Y
Sbjct: 515 GRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGY 574

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
             L+    +   ++ GL L  +  + G+ P+ +++  II      +E  RT+   V
Sbjct: 575 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII---DGLFEAGRTVPAKV 627



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 197/433 (45%), Gaps = 9/433 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 336 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 394

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + TFN+L+   A+    + A  +   +++ G+K     Y T+I    + GK+D   E F
Sbjct: 395 DIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKF 454

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           ++M++ G+ P+ + Y  LI G    G + KA      + +  ++ D V F ++I    + 
Sbjct: 455 NQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKL 514

Query: 211 GAVDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           G V  A ++    +N  +HP   D +    LM      G++++A  V+  +    I+   
Sbjct: 515 GRVMDAQNIFDLTVNVGLHP---DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 571

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +N   + G  +   S++ +M +KG+ P  +  + +ID    AG+   A     E
Sbjct: 572 VGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 631

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI++   +YS ++      + + +A+ L++ ++++ +K  + T+N +I  +    +
Sbjct: 632 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 691

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++ + +   GL P  +TYSI++    ++  VE    + S  +  G  P+  +   
Sbjct: 692 VEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 751

Query: 450 IIGMCSRRYEKAR 462
           ++    ++ E  R
Sbjct: 752 VVRELLKKNEIVR 764



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 155/320 (48%), Gaps = 7/320 (2%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + P  +TY  L+D C +A +   A   +G +    ++ D ++ + L+    ++   D A 
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIA 275
           D+L     E+  V PD  +   L+K+  N G+  +A ++ +M+ +     +P+V  Y   
Sbjct: 169 DILLHRTPELGCV-PDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTV 227

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+   + GD   AC ++ +M ++G+ PD V  S+++     A  ++ A   L++  N+G+
Sbjct: 228 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 287

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
                +Y++L+   S+   W++A+ +++ M+   + P V  +N L+ +LC   ++ +  +
Sbjct: 288 LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARD 347

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           V   M   G  P+  +Y+I+L     K  +     L      DG+ P++  F  +I    
Sbjct: 348 VFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLI---- 403

Query: 456 RRYEKARTLNEHVLSFNSGR 475
           + Y     L++ ++ FN  R
Sbjct: 404 KAYANCGMLDKAMIIFNEMR 423



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 34/189 (17%), Positives = 87/189 (46%), Gaps = 3/189 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL---STF 95
           GRI E + L  +M +KG+     +Y+     + ++ + +    +F ++  +       T+
Sbjct: 585 GRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTY 644

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           ++++     ++  + A  + + ++   +K D     T+I    ++ +V+   ++F  +  
Sbjct: 645 SIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISR 704

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           +G+ P   TY  +I    K G V +A   +  M++   +PD  + N ++    +   + R
Sbjct: 705 SGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVR 764

Query: 216 AFDVLAEMN 224
           A   L++++
Sbjct: 765 AGAYLSKID 773


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/515 (23%), Positives = 230/515 (44%), Gaps = 59/515 (11%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y+ L   G+  E   +  +M R+GL+      ++   ++CK  K+ KEA  FF  + 
Sbjct: 304 IHGYSIL---GQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKS-KEAAEFFDSMA 359

Query: 89  ----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P L T+++L+   A+         +   ++  G+ AD  +Y  LI    K G +D
Sbjct: 360 AKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMD 419

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +F +M   G+ P+  TYG +I   ++ G++A A   +  M +  +KPD +V+N+LI
Sbjct: 420 EAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLI 479

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                 G + +A ++++EM +   P  P+ +   +++ +    G+V  A++++ ++   +
Sbjct: 480 QGFCMHGNLVKAKELISEMMSRGIP-RPNTVFFNSIINSLCKEGRVVEAQDIFDLV--IH 536

Query: 265 IKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           I   P+V T    I+     G  E A  V D M   G+ PD V  SAL+D     G+++ 
Sbjct: 537 IGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDD 596

Query: 323 AFEILQEAKNQGISVGIISYSSLM------------------------------------ 346
              + +E  ++G+    I+Y  ++                                    
Sbjct: 597 GLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILG 656

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
           G C N  +  +A+ L++ + ++ +K  ++ +N +I A+    +  +  E+   + + GL 
Sbjct: 657 GLCRNNCD-DEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLV 715

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 466
           PN  TY +++    ++  VE    + S  ++ G  P+  +   II +   + E ++  N 
Sbjct: 716 PNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKAGN- 774

Query: 467 HVLSFNSGRP-QIENKWTSLALMV------YREAI 494
             LS   G+   +E    SL L +      YRE I
Sbjct: 775 -YLSKVDGKTISLEASTASLMLSLFSRKGKYREQI 808



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 185/402 (46%), Gaps = 16/402 (3%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + SYN +I    R+G +S+  +L  +M ++G++     Y +    +CK++   K   
Sbjct: 224 SPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAEL 283

Query: 82  RFFKLVPN---PTLSTFNMLM---SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
              +++ N   P   T+N ++   S+    K++ G F   R +   GL  D     + ++
Sbjct: 284 VLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMF---REMTRRGLMPDIFTCNSYMS 340

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
           +  K GK     E F  M   G +P++ TY  L+ G A  G V      +  M    +  
Sbjct: 341 SLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVA 400

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D  V+N LI A G+ G +D A  +  +M  +   V PD  T G ++ A +  G++  A +
Sbjct: 401 DHSVYNILIDAYGKRGMMDEAMLIFTQM--QERGVMPDAWTYGTVIAAFSRMGRLADAMD 458

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFA 314
            +  +    +K    VY   I      G+   A  +  +M  +G+  P+ VF +++I+  
Sbjct: 459 KFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSL 518

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G+V  A +I     + G    +I+++SL+         +KA  + + M S+ ++P V
Sbjct: 519 CKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDV 578

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            T +AL+   C   ++   + +  +M S G+ P TITY I+L
Sbjct: 579 VTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIIL 620



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 117/513 (22%), Positives = 210/513 (40%), Gaps = 41/513 (7%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           A F  +C+ +   + A         PT+ T+N+LM  C  +      F +     + GLK
Sbjct: 100 ALFNRICREEARPRVAL--------PTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLK 151

Query: 125 ADCKLYTTLIT-TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
            D  +   L+   C      DA+  + H M   G+EP+  +Y  ++    +  +  +A  
Sbjct: 152 TDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALD 211

Query: 184 AYGIM--RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
               M  +S    P+ V +N +I    + G V +A ++  EM  +   V PD +T  + +
Sbjct: 212 LLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQ--GVVPDVVTYSSYI 269

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            A   A  +D+A  V + +     +     Y   I+  S  G W+    ++ +MT++G++
Sbjct: 270 DALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLM 329

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD    ++ +      GK + A E       +G    +++YS L+   +        L L
Sbjct: 330 PDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNL 389

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           +  M+   +    S  N LI A      + + M + + M+  G+ P+  TY  ++ A  R
Sbjct: 390 FNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSR 449

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIE 479
              +   +   +Q    G+ P+ +++  +I G C      KA+ L   ++S    RP   
Sbjct: 450 MGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNT- 508

Query: 480 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN 539
                    V+  +I+        VV             DI + LV ++G   D +    
Sbjct: 509 ---------VFFNSIINSLCKEGRVVEA----------QDIFD-LVIHIGERPDVI---T 545

Query: 540 LCSLIDGFGEYDP--RAFSLLEEAASFGIVPCV 570
             SLIDG+G      +AF +L+   S GI P V
Sbjct: 546 FNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDV 578



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 101/429 (23%), Positives = 186/429 (43%), Gaps = 22/429 (5%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLV--QEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           T+S   +L S+C  S+ S+ A  +L  +  +  G   +   Y T+I    + G+V     
Sbjct: 190 TISYSTVLKSLCEDSR-SQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACN 248

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +FHEM+  G+ P+V TY + ID   KA  + KA      M S   +PD+V +N +I    
Sbjct: 249 LFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYS 308

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G       +  EM      + PD  T  + M +    G+   A E +  +     K  
Sbjct: 309 ILGQWKETAGMFREMTRR--GLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPD 366

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y++ ++  +  G      ++++ M   G++ D    + LID  G  G ++ A  I  
Sbjct: 367 LVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFT 426

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + + +G+     +Y +++ A S       A++ +  M ++ LKP     N+LI   C   
Sbjct: 427 QMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHG 486

Query: 389 QLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            L K  E++S+M S G+  PNT+ ++ ++ +  ++  V     +       G  P+++ F
Sbjct: 487 NLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITF 546

Query: 448 KCII---GMCSRRYEKARTLNEHVLSFNSGRPQI-----------ENKWTSLALMVYREA 493
             +I   G+   + EKA  + + ++S     P +            N      L+++RE 
Sbjct: 547 NSLIDGYGLVG-KMEKAFGVLDAMISVGI-EPDVVTYSALLDGYCRNGRIDDGLILFREM 604

Query: 494 IVAGTIPTV 502
           +  G  PT 
Sbjct: 605 LSKGVKPTT 613



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 121/521 (23%), Positives = 204/521 (39%), Gaps = 63/521 (12%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + ++N ++       +   A  +   + + G+  D   Y++ I    K+  +D    
Sbjct: 224 SPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAEL 283

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  +M++ G EP+  TY  +I G +  GQ  +  G +  M  + + PD    N+ +++  
Sbjct: 284 VLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLC 343

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G    A +    M A+ H   PD +T   L+   A  G V     ++  +    I   
Sbjct: 344 KHGKSKEAAEFFDSMAAKGH--KPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVAD 401

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             VY I I+   + G  + A  ++  M ++GV+PD      +I      G++  A +   
Sbjct: 402 HSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFN 461

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPTVSTMNALITALC-- 385
           +    G+    I Y+SL+       N  KA EL   M S  + +P     N++I +LC  
Sbjct: 462 QMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKE 521

Query: 386 -----------------------------DGDQLPKTME----VLSDMKSLGLCPNTITY 412
                                        DG  L   ME    VL  M S+G+ P+ +TY
Sbjct: 522 GRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTY 581

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN 472
           S LL    R   ++ GL+L  +    GV P  + +  I+               H L FN
Sbjct: 582 SALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIIL---------------HGL-FN 625

Query: 473 SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSA 532
            GR       T  A  +  E I +GT   +     +LG L      D    L + LG   
Sbjct: 626 DGR-------TVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMN 678

Query: 533 DALKRSNLCSLIDGFGEYDPR--AFSLLEEAASFGIVPCVS 571
                + + ++ID   +   R  A  L +  ++ G+VP  S
Sbjct: 679 VKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNAS 719


>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Brachypodium distachyon]
          Length = 791

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 165/342 (48%), Gaps = 10/342 (2%)

Query: 83  FFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITT 136
           F ++V N   P L T+N+++ V   SK +    +VL LV   ++ G+  D   Y TLI+ 
Sbjct: 199 FRRMVANGVCPALVTYNVVLHVY--SKIAVPWKEVLALVDSMRKDGIPLDRYTYNTLISC 256

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
           C +        +VF EM  AG EP+  T  +L+D   KA +  +A G    M      P 
Sbjct: 257 CRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPS 316

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +N+LI++  + G ++ A  +  EM  EV  ++PD IT   L+     AG++D A   
Sbjct: 317 VVTYNSLISSYVKDGLLEEATQLKEEM--EVKGIEPDVITYTTLVSGLDRAGKIDAAIGT 374

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           Y  + +   K     Y   I      G +     V+D++   G +PD V  + L+   G 
Sbjct: 375 YNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQ 434

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G       + +E K  G      +Y SL+ + S    + +A+E+Y+ M    + P +ST
Sbjct: 435 NGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDIST 494

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            NA+++AL  G +  +  ++ ++M++L   P+ ++YS LL A
Sbjct: 495 YNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHA 536



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 197/468 (42%), Gaps = 44/468 (9%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH Y+++    +  E + L++ M + G+  +D+  +    + C+ +   KEA + F  + 
Sbjct: 218 LHVYSKIAVPWK--EVLALVDSMRKDGI-PLDRYTYNTLISCCRRRALYKEAAKVFDEMR 274

Query: 89  ----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P   T N L+ V   ++  + A  VL+ +++ G       Y +LI++  K G ++
Sbjct: 275 AAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLE 334

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++  EM   GIEP+V TY  L+ G  +AG++  A G Y  M     KP+   +NALI
Sbjct: 335 EATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALI 394

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
              G  G       V  E+ +      PD +T   L+      G       V+K + K  
Sbjct: 395 KLHGVRGKFPEMMIVFDEIRSA--GFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSG 452

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
                + Y   I+  S+ G ++ A  +Y  M + G+ PD    +A++      G+ E A 
Sbjct: 453 YVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAE 512

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP------------ 372
           ++  E +N       +SYSSL+ A +NAK   K   L E + + +++             
Sbjct: 513 KLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYAERIESHNGLVKTLVLVN 572

Query: 373 -----------------------TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
                                   ++ +NA+I+       + K  E+LS MK   +  +T
Sbjct: 573 SKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEILSLMKESSINLST 632

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
            TY+ L+    R  D E    +L++ K     P+   +  +I    R+
Sbjct: 633 ATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRK 680



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 190/429 (44%), Gaps = 11/429 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF-RFFK 85
           +YN LI    + G + E   L E+ME KG+ + D + +    +       I  A   + +
Sbjct: 319 TYNSLISSYVKDGLLEEATQLKEEMEVKGI-EPDVITYTTLVSGLDRAGKIDAAIGTYNE 377

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++ N   P L T+N L+ +            V   ++ AG   D   + TL+    ++G 
Sbjct: 378 MLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQNGL 437

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
              +  VF EM  +G  P   TY +LI   ++ G   +A   Y  M    + PD   +NA
Sbjct: 438 DTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPDISTYNA 497

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +++A  + G  ++A  + AEM  E     PD ++  +L+ A ANA ++D+ + + + I+ 
Sbjct: 498 VLSALARGGRWEQAEKLFAEM--ENLDSRPDELSYSSLLHAYANAKKLDKMKSLSEDIYA 555

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I+    +    +   S+  +       + ++ ++    D   L+A+I   G  G V+ 
Sbjct: 556 ERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKK 615

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
             EIL   K   I++   +Y+SLM   S   + +K   +   +KS + +P   + N +I 
Sbjct: 616 VEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIY 675

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           A     Q+ +   + S+MK  GL P+ +TY+I + +       E  + L+      G  P
Sbjct: 676 AYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKP 735

Query: 443 NLVMFKCII 451
           N   +  I+
Sbjct: 736 NERTYNTIL 744



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 157/363 (43%), Gaps = 7/363 (1%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK-AGQVAKAFGA 184
           D   YT LI+  +++ +      VF  MV  G+ P + TY  ++   +K A    +    
Sbjct: 175 DASAYTALISALSRASRFRDAVAVFRRMVANGVCPALVTYNVVLHVYSKIAVPWKEVLAL 234

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
              MR   +  DR  +N LI+ C +      A  V  EM A     +PD +T+ +L+   
Sbjct: 235 VDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAA--GFEPDKVTLNSLLDVY 292

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
             A + D A  V K + +     +   Y   I+   + G  E A  + ++M  KG+ PD 
Sbjct: 293 GKARRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDV 352

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           +  + L+     AGK++AA     E    G    + +Y++L+        + + + +++ 
Sbjct: 353 ITYTTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDE 412

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           ++S    P V T N L+          +   V  +MK  G  P   TY  L+ +  R   
Sbjct: 413 IRSAGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGL 472

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKW 482
            +  + +  +  E G+ P++  +  ++   +R  R+E+A  L   + + +S RP  E  +
Sbjct: 473 FDQAMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDS-RPD-ELSY 530

Query: 483 TSL 485
           +SL
Sbjct: 531 SSL 533



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/347 (19%), Positives = 155/347 (44%), Gaps = 33/347 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L++V   +        V + ++++G   +   Y +LI++ ++ G  D   E+
Sbjct: 420 PDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEI 479

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M+ AGI P++ TY A++   A+ G+  +A   +  M + + +PD + +++L+ A   
Sbjct: 480 YKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYAN 539

Query: 210 SGAVDR----AFDVLAE--------------MNAEVHPVDP---------------DHIT 236
           +  +D+    + D+ AE              +N++V+ +                 D   
Sbjct: 540 AKKLDKMKSLSEDIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSLDINV 599

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           + A++      G V +  E+  ++ + +I  +   Y   ++  S+ GD E   ++  ++ 
Sbjct: 600 LNAMISIYGKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIK 659

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
                PD    + +I   G  G+++ A  +  E K  G+   I++Y+  + +      ++
Sbjct: 660 SSRARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFE 719

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +A++L  +M +   KP   T N ++   C   ++      +S++  L
Sbjct: 720 EAIDLVRYMVTHGCKPNERTYNTILQEYCSHGRIADGKSFISNLPEL 766



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 105/478 (21%), Positives = 196/478 (41%), Gaps = 36/478 (7%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + L P+ +L     L+S+ + + D      VL  +  A L A       +++  A  G+ 
Sbjct: 71  WNLPPSLSLPARRALLSLLSDAPDRASPRDVLSALPAADLAA-------VLSALASRGRP 123

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGAL---IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
                  H   +   E  +H    L   I   A+AG++A A      +      PD   +
Sbjct: 124 GVALAAIHAARDLHGERVLHHPRVLPTAIRVLARAGRLADAS----ALLDAAPDPDASAY 179

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
            ALI+A  ++     A  V   M A  + V P  +T   ++   +        +EV  ++
Sbjct: 180 TALISALSRASRFRDAVAVFRRMVA--NGVCPALVTYNVVLHVYSKIAVP--WKEVLALV 235

Query: 261 HKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
                 G P     Y   I+CC +   ++ A  V+D+M   G  PD+V L++L+D  G A
Sbjct: 236 DSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKA 295

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            + + A  +L+E +  G    +++Y+SL+ +       ++A +L E M+   ++P V T 
Sbjct: 296 RRYDEAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITY 355

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             L++ L    ++   +   ++M   G  PN  TY+ L+     +      +++  + + 
Sbjct: 356 TTLVSGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRS 415

Query: 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ 485
            G +P++V +  ++ +  +                SG     + + SL            
Sbjct: 416 AGFVPDVVTWNTLLAVFGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQ 475

Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL---VENLGVSADALKRSNL 540
           A+ +Y+  I AG  P +   + VL  L      +  E+L   +ENL    D L  S+L
Sbjct: 476 AMEIYKRMIEAGIHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSL 533


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 174/391 (44%), Gaps = 17/391 (4%)

Query: 77  IKEAFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           ++EA R  +    L P+       ++  +CAS + +E A +VL     A  + D   Y  
Sbjct: 72  LEEAIRLVESMAGLEPSAAGPCAALIKKLCASGRTAE-ARRVL-----ASCEPDVMSYNA 125

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           ++     +G++D    +   M    +EP+ +TY  LI G    G+   A      M  + 
Sbjct: 126 MVAGYCVTGQLDNARRLVAAM---PMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRG 182

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
             PD V +  L+ A  +     +A  +L EM  +     PD +T   ++      G+VD 
Sbjct: 183 CVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDK--GCAPDIVTYNVVVNGICQEGRVDD 240

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A E  K +  Y  +     Y I +        WE A  +  +M++KG  P+ V  + LI 
Sbjct: 241 AMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLIS 300

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
           F    G VE A EIL +    G +   +SY+ ++ A    K   +A+   E M S    P
Sbjct: 301 FLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYP 360

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            + + N L+TALC G ++   +E+L  +K  G  P  I+Y+ ++    +    E  L LL
Sbjct: 361 DIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELL 420

Query: 433 SQAKEDGVIPNLVMFKCI-IGMCSR-RYEKA 461
           ++    G+ P+++ +  I  G+C   R E+A
Sbjct: 421 NEMVTKGLQPDIITYSTISSGLCREGRIEEA 451



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 183/391 (46%), Gaps = 6/391 (1%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
           Y+A     C + + +  A R    +P  P   T+N L+        ++ A  VL  +   
Sbjct: 123 YNAMVAGYCVTGQ-LDNARRLVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRR 181

Query: 122 GLKADCKLYTTLI-TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
           G   D   YT L+  TC +SG   A+ ++  EM + G  P++ TY  +++G  + G+V  
Sbjct: 182 GCVPDVVTYTILLEATCKRSGYKQAV-KLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDD 240

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A      + S   +P+ V +N ++     +   + A  ++AEM+ +  P  P+ +T   L
Sbjct: 241 AMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRP--PNVVTFNML 298

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           +      G V+ A E+   I KY        Y   ++   +    + A +  + M   G 
Sbjct: 299 ISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGC 358

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            PD V  + L+      G+V+AA E+L + K++G +  +ISY++++   + A   ++ALE
Sbjct: 359 YPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALE 418

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           L   M +  L+P + T + + + LC   ++ + ++    ++ +G+ PNT+ Y+ +L+   
Sbjct: 419 LLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLC 478

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           ++      + L +    +G +PN   +  +I
Sbjct: 479 KRRATHSAIDLFTYMVSNGCMPNESTYTILI 509



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 169/406 (41%), Gaps = 38/406 (9%)

Query: 15  NGKHANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNV 70
           N +    A  +    ++YN LIR    +GR    + +L+DM R+G +             
Sbjct: 138 NARRLVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCV------------- 184

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
                              P + T+ +L+         + A ++L  +++ G   D   Y
Sbjct: 185 -------------------PDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTY 225

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             ++    + G+VD   E    + + G EPN  +Y  ++ G   A +   A      M  
Sbjct: 226 NVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSR 285

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           K   P+ V FN LI+   + G V+ A ++L ++    +   P+ ++   ++ A     ++
Sbjct: 286 KGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPK--YGCTPNSLSYNPILHAFCKQKKM 343

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           DRA    +++           Y   +    + G+ + A  +   +  KG  P  +  + +
Sbjct: 344 DRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTV 403

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID    AGK E A E+L E   +G+   II+YS++          ++A++ +  ++ + +
Sbjct: 404 IDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGI 463

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +P     NA++  LC        +++ + M S G  PN  TY+IL+
Sbjct: 464 RPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILI 509



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/314 (21%), Positives = 135/314 (42%), Gaps = 48/314 (15%)

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
           + G ++    +   M  AG+EP+      ALI     +G+ A+A          + +PD 
Sbjct: 68  RRGDLEEAIRLVESM--AGLEPSAAGPCAALIKKLCASGRTAEARRVLA-----SCEPDV 120

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           + +NA++     +G +D A  ++A M     P++PD  T   L++     G+ D A    
Sbjct: 121 MSYNAMVAGYCVTGQLDNARRLVAAM-----PMEPDTYTYNTLIRGLCGRGRTDNA---- 171

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
                                           +V DDM ++G +PD V  + L++     
Sbjct: 172 -------------------------------LAVLDDMLRRGCVPDVVTYTILLEATCKR 200

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
              + A ++L E +++G +  I++Y+ ++           A+E  + + S   +P   + 
Sbjct: 201 SGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSY 260

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N ++  LC  ++     +++++M   G  PN +T+++L+    R+  VE  + +L Q  +
Sbjct: 261 NIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPK 320

Query: 438 DGVIPNLVMFKCII 451
            G  PN + +  I+
Sbjct: 321 YGCTPNSLSYNPIL 334


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/479 (23%), Positives = 213/479 (44%), Gaps = 25/479 (5%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV 62
           D  K +L + +  G    ++ DV       N L + G +S+ + L ++M  +G+      
Sbjct: 166 DKAKELLNWMWEQG----FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVAC 221

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPT----LSTFN-MLMSVCASSKDSEGAFQVLRL 117
           Y+       K    +  +  + +L+  P+    + ++N M+  +C   K  E +F++   
Sbjct: 222 YNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE-SFEIWHR 280

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +++     D   Y+TLI     SG +D    V+ EM   G+ P+V  Y  +++G  +AG+
Sbjct: 281 MKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGR 340

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDH 234
           + +    + +M  +  +   V +N LI    ++  VD A  +      E+ P      D 
Sbjct: 341 IEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIW-----ELLPEKDCCADS 394

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVY 292
           +T G L+      G +++A  + +     N +G  +   Y+  IN   + G  +    V 
Sbjct: 395 MTYGVLVHGLCKNGYLNKALSILEEAE--NGRGDLDTFAYSSMINGLCREGRLDEVAGVL 452

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           D MTK G  P+    +A+I+    A K+E A        ++G    +++Y++L+   S A
Sbjct: 453 DQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKA 512

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           + + +A  L + M     KP + T + L+  LC G +L   + +       G  P+   +
Sbjct: 513 ERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMH 572

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVL 469
           +I++        VE  L L S+ K+   +PNLV    ++ G    R +E+A  + +H+L
Sbjct: 573 NIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHIL 631



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 185/446 (41%), Gaps = 72/446 (16%)

Query: 81  FRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F +F+ +  +P L T+N+L+ +    K  + A ++L  + E G   D   Y TLI + AK
Sbjct: 137 FLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAK 196

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRV 198
           +G +    ++F EM   G+ P+V  Y  LIDG  K G +  A   +  +++  +V P+  
Sbjct: 197 NGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIP 256

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAE------------VH------------------ 228
            +N +I    + G  D +F++   M               +H                  
Sbjct: 257 SYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEM 316

Query: 229 ---PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
               V PD +    ++     AG+++   E++K++ K   + T   Y I I    +    
Sbjct: 317 AENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKV 375

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A S+++ + +K    D +    L+      G +  A  IL+EA+N    +   +YSS+
Sbjct: 376 DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSM 435

Query: 346 M-GACS----------------------------------NAKNWQKALELYEHMKSIKL 370
           + G C                                    A   + AL  + +M S   
Sbjct: 436 INGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGC 495

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            PTV T N LI  L   ++  +   ++ +M   G  PN ITYS+L+    +   +++ L 
Sbjct: 496 FPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALN 555

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMCS 455
           L  QA E G  P++ M   II G+CS
Sbjct: 556 LWCQALEKGFKPDVKMHNIIIHGLCS 581



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 159/358 (44%), Gaps = 10/358 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + ++N L++    S   + A       +  GL  + + Y  LI    +  + D   E+
Sbjct: 112 PGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKEL 171

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M   G  P+V +YG LI+  AK G ++ A   +  M  + V PD   +N LI    +
Sbjct: 172 LNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFK 231

Query: 210 SGAVDRAFDVLAEM--NAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
            G +  A ++   +     V+P  P + + I  L K     G+ D + E++  + K    
Sbjct: 232 KGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCK----CGKFDESFEIWHRMKKNERG 287

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+  I+    +G+ + A  VY +M + GV PD V  + +++    AG++E   E+
Sbjct: 288 QDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLEL 347

Query: 327 LQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            +  + +G    ++SY+ L+ G   NAK   +A+ ++E +          T   L+  LC
Sbjct: 348 WKVMEKEGCRT-VVSYNILIRGLFENAKV-DEAISIWELLPEKDCCADSMTYGVLVHGLC 405

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
               L K + +L + ++     +T  YS ++    R+  ++    +L Q  + G  PN
Sbjct: 406 KNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPN 463



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 143/341 (41%), Gaps = 5/341 (1%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           R+ +  G +   + Y +L+    +S K D     F      G+ PN+ TY  LI    + 
Sbjct: 103 RMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRK 162

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            Q  KA      M  +   PD   +  LI +  ++G +  A  +  EM      V PD  
Sbjct: 163 KQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER--GVTPDVA 220

Query: 236 TIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
               L+      G +  A E++ +++   ++      Y + IN   + G ++ +  ++  
Sbjct: 221 CYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHR 280

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K     D    S LI     +G ++ A  + +E    G+S  ++ Y++++     A  
Sbjct: 281 MKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGR 340

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++ LEL++ M+    + TV + N LI  L +  ++ + + +   +     C +++TY +
Sbjct: 341 IEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGV 399

Query: 415 LLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454
           L+    +   +   L +L +A+   G +        I G+C
Sbjct: 400 LVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLC 440



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 2/157 (1%)

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKN 354
           T+K   P++V L+ +  +A ++   + A +I Q      G   GI SY+SL+ A   +  
Sbjct: 71  TQKCKCPEDVALTVIKAYAKNS-MPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNK 129

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           W +A   + + +++ L P + T N LI   C   Q  K  E+L+ M   G  P+  +Y  
Sbjct: 130 WDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGT 189

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L+ +  +   +   L L  +  E GV P++  +  +I
Sbjct: 190 LINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILI 226


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 193/459 (42%), Gaps = 48/459 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKLVP 88
           L R G  +  +D    M  +G+     +Y+A    +CK      ++  +K+ F   ++ P
Sbjct: 190 LSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES-EMSP 248

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           + T +  +M++  C    D + A QV   + + G + +   Y+TLI     SG+V+  F+
Sbjct: 249 D-TFTYTSMILGHC-RKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFD 306

Query: 149 VFHEMV-----------------------------------NAGIEPNVHTYGALIDGCA 173
           +  EM+                                   N G EPNV+TY ALI G  
Sbjct: 307 LIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLC 366

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
            +G +  A G +  M    V P+ V +NALI    ++  +  AF VL  M    +   P+
Sbjct: 367 VSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR--NGCSPN 424

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +T   ++K     G   +A  V   + +         Y   I     +G+   A  + D
Sbjct: 425 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 484

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 352
            M   G  PDE   + LI       K+E+AF +  E  + G+    ++Y++L+ G C + 
Sbjct: 485 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 544

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           K    A  L EHMK    +P V T N LI  L   +      E+   M   G+ PN +TY
Sbjct: 545 K-LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + ++    +     + L + ++  E G +PNL+ +  +I
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 180/422 (42%), Gaps = 46/422 (10%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L+  C S +        L ++ ++GL+     Y+ L+   ++ G   A+ + +H M++ G
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 158 IEPNVHTYGALIDGCAKAGQVA-----------------------------------KAF 182
           ++PN+  Y A+I+   K G VA                                    A 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 270

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALM 241
             +  M  +  +P+ V ++ LI     SG V+ AFD++ EM   +H + P  H   G ++
Sbjct: 271 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM--ILHGILPTAHTCTGPII 328

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKG 299
             C      D  R    M +K      P VYT    I+    +G  + A  ++  M++ G
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNK---GCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDG 385

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           V P+ V  +ALI+      +++ AF +L      G S  I++Y+ ++       + +KA+
Sbjct: 386 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAM 445

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            +  +M        + T N +I   CD       + +L  M+  G  P+  +Y+ L+   
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQ 477
            +   +E    L ++  +DG+ PN V +  +I G C   + + A +L EH +  +  RP 
Sbjct: 506 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH-MKRSGCRPN 564

Query: 478 IE 479
           ++
Sbjct: 565 VQ 566



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 191/435 (43%), Gaps = 14/435 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L  +N +++      +   A  +++ V E+ +  D   YT++I    +   +D+  +V
Sbjct: 213 PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F++M   G EPN  TY  LI+G   +G+V +AF     M    + P        I A   
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  + A+ +  +M  +    +P+  T  AL+     +G +  A  ++  + +  +    
Sbjct: 333 MGCYEDAWRLFVDMKNK--GCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNT 390

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   IN   +    ++A  V + M + G  P+ V  + +I      G  + A  ++  
Sbjct: 391 VTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNN 450

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G S  +++Y++++    ++ N   AL + + M+    KP   +   LI   C   +
Sbjct: 451 MLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISK 510

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +     + ++M   GLCPN +TY+ L+    + + ++    LL   K  G  PN+  +  
Sbjct: 511 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV 570

Query: 450 IIGMCSRR--YEKARTLNE---------HVLSFNSGRPQI-ENKWTSLALMVYREAIVAG 497
           +I   +++  +  A  L +         +V+++ +    + +N  TSLAL ++ + I  G
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 498 TIPTVEVVSKVLGCL 512
            +P +   S ++  L
Sbjct: 631 CLPNLLTYSSLIRAL 645



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 153/374 (40%), Gaps = 7/374 (1%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVC 102
           L  DM+ KG       Y A    +C S   +K A   F  +      P   T+N L+++ 
Sbjct: 342 LFVDMKNKGCEPNVYTYTALISGLCVS-GILKVAIGLFHRMSRDGVFPNTVTYNALINIL 400

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
             ++  + AF VL L+   G   +   Y  +I      G       V + M+  G   N+
Sbjct: 401 VENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANL 460

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY  +I G   +G    A     +MR    KPD   +  LI    +   ++ AF +  E
Sbjct: 461 VTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNE 520

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  +   + P+ +T  AL+       ++D A  + + + +   +   + Y + I+  ++ 
Sbjct: 521 MVDD--GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
            ++  A  +   M ++G+ P+ V  +A+ID     G    A E+  +   QG    +++Y
Sbjct: 579 NNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTY 638

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           SSL+ A       ++A  L+  ++   L P   T   +I A     ++      L  M  
Sbjct: 639 SSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK 698

Query: 403 LGLCPNTITYSILL 416
            G  P   TY +L+
Sbjct: 699 AGCQPTLWTYGVLI 712



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 5/348 (1%)

Query: 110 GAFQVL--RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           G F  L  RLV      A  +    LI +C     +         +  +G+   +  Y A
Sbjct: 126 GTFAALARRLVDARRYAAAGRARIHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSA 185

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+   ++ G  A     Y  M S+ V+P+ +++NA+I A  + G V  A  ++ ++    
Sbjct: 186 LLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES- 244

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD  T  +++        +D A +V+  + K   +     Y+  IN    +G    
Sbjct: 245 -EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNE 303

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  +  +M   G++P     +  I      G  E A+ +  + KN+G    + +Y++L+ 
Sbjct: 304 AFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALIS 363

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
               +   + A+ L+  M    + P   T NALI  L +  ++     VL+ M   G  P
Sbjct: 364 GLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSP 423

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           N +TY+ ++       D +  +++++   + G   NLV +  II G C
Sbjct: 424 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYC 471



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 164/424 (38%), Gaps = 35/424 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  LI    +  ++     L  +M   GL   +  Y A     CK +K +  A    + 
Sbjct: 497 SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEK-LDTATSLLEH 555

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N+L+       +  GA ++ +++ E G+  +   YT +I    K+G 
Sbjct: 556 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGS 615

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                E+F++M+  G  PN+ TY +LI    + G+V +A   +  +    + PD + +  
Sbjct: 616 TSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK 675

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA------------------- 243
           +I A   SG V+ AF+ L  M        P   T G L+K                    
Sbjct: 676 MIEAYIMSGKVEHAFNFLGRMIKA--GCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVV 733

Query: 244 --CANAGQVDRAREVYKM---IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
             C+   Q      V  M   + + +   + +V    ++  S  G W  A  +   M  +
Sbjct: 734 PNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQ 793

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD+   ++L+        V+ A  + +    QG  V +  Y  L+ A       ++A
Sbjct: 794 GLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEA 853

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
              +E+M      P       LI  L         ME L  M++    P+   Y+IL   
Sbjct: 854 RITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILARE 913

Query: 419 CERK 422
             +K
Sbjct: 914 ASKK 917


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 166/368 (45%), Gaps = 40/368 (10%)

Query: 92  LSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           + TFN+L++  C   K  +    + R+V E  +  D   Y T++   +K G++  + E+ 
Sbjct: 204 VQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELL 263

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M   G+ PN  TY  L+ G  K G + +AF    +M+  NV PD   +N LI     +
Sbjct: 264 LDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNA 323

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--- 267
           G++    +++  M +    + PD +T   L+  C   G    AR++ + +    +K    
Sbjct: 324 GSMREGLELMDAMKS--LKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQV 381

Query: 268 -------------------------------TPEV--YTIAINCCSQTGDWEFACSVYDD 294
                                          +P++  Y   I    + GD   A  +  +
Sbjct: 382 THNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMRE 441

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M +KG+  + + L+ ++D      K++ A  +L  A  +G  V  ++Y +L+      + 
Sbjct: 442 MGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEK 501

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-S 413
            +KALE+++ MK +K+ PTVST N+LI  LC   +    ME   ++   GL P+  T+ S
Sbjct: 502 VEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNS 561

Query: 414 ILLVACER 421
           I+L  C+ 
Sbjct: 562 IILGYCKE 569



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 190/428 (44%), Gaps = 50/428 (11%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +++    +GR+S+  +LL DM++ GL+     Y+   +  CK   ++KEAF+  +L
Sbjct: 242 TYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCK-LGSLKEAFQIVEL 300

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      P L T+N+L++ +C +    EG  +++  ++   L+ D   Y TLI  C + G
Sbjct: 301 MKQTNVLPDLCTYNILINGLCNAGSMREG-LELMDAMKSLKLQPDVVTYNTLIDGCFELG 359

Query: 142 -----------------------------------KVDAMFEVFHEMVNA-GIEPNVHTY 165
                                              K +A+     E+V+  G  P++ TY
Sbjct: 360 LSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTY 419

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
             LI    K G ++ A      M  K +K + +  N ++ A  +   +D A ++L   + 
Sbjct: 420 HTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHK 479

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
               VD   +T G L+       +V++A E++  + K  I  T   +   I      G  
Sbjct: 480 RGFIVD--EVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKT 537

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           E A   +D++ + G++PD+   +++I      G+VE AFE   E+          + + L
Sbjct: 538 ELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNIL 597

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +         +KAL  +  +   +   TV T N +I+A C   +L +  ++LS+M+  GL
Sbjct: 598 LNGLCKEGMTEKALNFFNTLIEEREVDTV-TYNTMISAFCKDKKLKEAYDLLSEMEEKGL 656

Query: 406 CPNTITYS 413
            P+  TY+
Sbjct: 657 EPDRFTYN 664



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 168/407 (41%), Gaps = 42/407 (10%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGK 142
           L P P+ + F++ +S          A Q+ + +    LK +     TL+    +   S  
Sbjct: 125 LSPPPSKALFDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFS 184

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFN 201
           + +  EVF +MV  G+  NV T+  L++G    G++  A G    M S+  V PD V +N
Sbjct: 185 ISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYN 244

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            ++ A  + G +    ++L +M    + + P+ +T   L+      G +  A ++ +++ 
Sbjct: 245 TILKAMSKKGRLSDLKELLLDMKK--NGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMK 302

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           + N+      Y I IN     G       + D M    + PD V  + LID     G   
Sbjct: 303 QTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSL 362

Query: 322 AAFEILQEAKNQGI------------------------------------SVGIISYSSL 345
            A +++++ +N G+                                    S  I++Y +L
Sbjct: 363 EARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTL 422

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           + A     +   ALE+   M    +K    T+N ++ ALC   +L +   +L+     G 
Sbjct: 423 IKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGF 482

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             + +TY  L++   R++ VE  L +  + K+  + P +  F  +IG
Sbjct: 483 IVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIG 529



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 135/343 (39%), Gaps = 48/343 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E   L+E ME  G+      ++     +CK +K      +  +L
Sbjct: 347 TYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKEL 406

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-----------CK--- 128
           V     +P + T++ L+       D  GA +++R + + G+K +           CK   
Sbjct: 407 VDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERK 466

Query: 129 ---------------------LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
                                 Y TLI    +  KV+   E++ EM    I P V T+ +
Sbjct: 467 LDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNS 526

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           LI G    G+   A   +  +    + PD   FN++I    + G V++AF+   E  +  
Sbjct: 527 LIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNE--SIK 584

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWE 286
           H   PD+ T   L+      G  ++A   +  +I +  +      Y   I+   +    +
Sbjct: 585 HSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDTV--TYNTMISAFCKDKKLK 642

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            A  +  +M +KG+ PD    ++ I      GK+    E+L++
Sbjct: 643 EAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKK 685



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 39/237 (16%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAFRFFKLVPNP 90
           L ++ ++ E  +LL    ++G + +D+V +      FF   K +KA++      K+   P
Sbjct: 461 LCKERKLDEAHNLLNSAHKRGFI-VDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITP 519

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+STFN L+        +E A +    + E+GL  D   + ++I    K G+V+  FE +
Sbjct: 520 TVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFY 579

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG--------------------------- 183
           +E +    +P+ +T   L++G  K G   KA                             
Sbjct: 580 NESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDK 639

Query: 184 ----AYGI---MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
               AY +   M  K ++PDR  +N+ I+   + G +    ++L + + +   +  D
Sbjct: 640 KLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFGSMKRD 696



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 19/181 (10%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + ++N LI      G+    ++  +++   GLL  D  +++     CK  + +++A
Sbjct: 517 ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGR-VEKA 575

Query: 81  FRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLIT 135
           F F+    K    P   T N+L++       +E A      L++E   + D   Y T+I+
Sbjct: 576 FEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEER--EVDTVTYNTMIS 633

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-----DG-CAKAGQVAKAF-GAYGIM 188
              K  K+   +++  EM   G+EP+  TY + I     DG  ++  ++ K F G +G M
Sbjct: 634 AFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKFGSM 693

Query: 189 R 189
           +
Sbjct: 694 K 694


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 197/423 (46%), Gaps = 8/423 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           G+++   +LL    + GL   +  Y+      C+++     +     ++     PT+ T+
Sbjct: 242 GQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTIYTY 301

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
             +++    +++   A++V   +++ G   D  +YTT+I    + G      +++ EM++
Sbjct: 302 QEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMD 361

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G++PN +TY  ++ G  K+G   +A   Y  M +K      V  N +I+     G  D 
Sbjct: 362 KGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDE 421

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           AF+V  +M+     +  D IT  +L++     G+VD    +   +   + + +  +Y + 
Sbjct: 422 AFEVFKKMSET--GIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELL 479

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I    + GD+E A  +  DM+ KG+ P+      ++  +  +G  E   E+  E  N+G 
Sbjct: 480 IIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGY 539

Query: 336 SVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
                + + ++   CS  K+  +A E+++ M    +K    T N+LI   C   ++ K+M
Sbjct: 540 GTTTATCNKIISELCSRGKS-DEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSM 598

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
            +L+++ + GL P+  +Y+ L++   +  D E    L       G+ P+  + + +I G+
Sbjct: 599 NLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGL 658

Query: 454 CSR 456
           C +
Sbjct: 659 CKQ 661



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 155/385 (40%), Gaps = 38/385 (9%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPNVHTYG 166
           E A +V   ++EAG++       ++++ C K+GK + +FE + EM+ AG   + N  T G
Sbjct: 173 EEAIEVYFQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVG 232

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI     +GQVA+ +          + P    +N LI    Q+       +VL  M A 
Sbjct: 233 CLIQAFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIAR 292

Query: 227 VH-PV--------------------------------DPDHITIGALMKACANAGQVDRA 253
            H P                                  PD +    ++      G    A
Sbjct: 293 NHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEA 352

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           R+++  +    ++     Y   ++   ++GD+E AC +Y++M  KG     V  + +I  
Sbjct: 353 RKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISE 412

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKP 372
               GK + AFE+ ++    GI    I+Y+SL+ G C   K  ++ + L   + +   +P
Sbjct: 413 LCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDER-MNLLNELVAQDPQP 471

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           +VS    LI   C          +L DM S GL PN  TY  +L    +  D E    L 
Sbjct: 472 SVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELY 531

Query: 433 SQAKEDGVIPNLVMFKCIIG-MCSR 456
           ++    G          II  +CSR
Sbjct: 532 NETCNKGYGTTTATCNKIISELCSR 556



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 122/539 (22%), Positives = 225/539 (41%), Gaps = 52/539 (9%)

Query: 67  FFNVCKSQKAIKEAFRFFKLV-------PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           F  +  +Q  +  + RFF+ +       P+P  S  NML      +K    A +  ++V+
Sbjct: 94  FRELVATQNNVLLSLRFFQWLCTNHDCTPDPISS--NMLFEALLDAK----AVRAAKMVR 147

Query: 120 E-AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           + AG   D       +      G ++   EV+ ++  AGI  ++    +++ GC KAG+ 
Sbjct: 148 DIAGFIPDSASLEQYVKCLCGVGFIEEAIEVYFQLKEAGIRISIVACNSILSGCLKAGKT 207

Query: 179 AKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
              F  Y  M       D        LI A   SG V R +++L +       +DP + T
Sbjct: 208 ELLFEFYQEMIKAGTASDANTETVGCLIQAFCDSGQVARGYELLNQFLKT--GLDPGNPT 265

Query: 237 IGALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYD 293
              L+     A       EV + MI + ++   P +YT    IN   +  +   A  V++
Sbjct: 266 YNKLIAGFCQAKNYASMSEVLHTMIARNHL---PTIYTYQEIINGLCKNEECLEAYRVFN 322

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           D+  +G  PD V  + +I      G    A ++  E  ++G+     +Y++++     + 
Sbjct: 323 DLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSG 382

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           ++++A ELY  M +     T  T N +I+ LC   +  +  EV   M   G+  + ITY+
Sbjct: 383 DFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYN 442

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMCSR-RYEKARTLNEHVLSF 471
            L+    ++  V+  + LL++       P++ +++  II  C    +E A+ L    L  
Sbjct: 443 SLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRL----LGD 498

Query: 472 NSGRPQIENKWTSLALM--------------VYREAIVAGTIPTVEVVSKVLGCLQLPYN 517
            S +    N +T   ++              +Y E    G   T    +K++  L     
Sbjct: 499 MSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGK 558

Query: 518 ADIRERLVENL---GVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVPCVS 571
           +D    + + +   G+ ADA+  +   SLI GF +     ++ +LL E  + G+ P  S
Sbjct: 559 SDEASEMFKKMSETGIKADAITYN---SLIRGFCKEGKVGKSMNLLNELVAQGLQPSAS 614



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 166/391 (42%), Gaps = 11/391 (2%)

Query: 18  HANYAHDVSEQLHSYNRLIRQ-GRISECID---LLEDMERKGLLDMDKVYHARFFNVCKS 73
           H   A +    +++Y  +I    +  EC++   +  D++ +G      +Y      +C+ 
Sbjct: 287 HTMIARNHLPTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEM 346

Query: 74  Q---KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
               +A K  F        P   T+N ++     S D E A ++   +   G        
Sbjct: 347 GSFGEARKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTC 406

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             +I+     GK D  FEVF +M   GI+ +  TY +LI G  K G+V +       + +
Sbjct: 407 NKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVA 466

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           ++ +P   ++  LI    + G  + A  +L +M+++   + P+  T   ++     +G  
Sbjct: 467 QDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSK--GLHPNAYTYDTMLHGSLKSGDF 524

Query: 251 DRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +  RE+Y +  +K     T     I    CS+ G  + A  ++  M++ G+  D +  ++
Sbjct: 525 EHVRELYNETCNKGYGTTTATCNKIISELCSR-GKSDEASEMFKKMSETGIKADAITYNS 583

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI      GKV  +  +L E   QG+     SY+SL+       + + A  L+  M S  
Sbjct: 584 LIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKG 643

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           ++P  +    LI+ LC   +  + M+ L  M
Sbjct: 644 IEPHANLREHLISGLCKQGRATEGMDRLMGM 674



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 165/403 (40%), Gaps = 38/403 (9%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD +  N L  A   + AV RA    A+M  ++    PD  ++   +K     G ++ A 
Sbjct: 122 PDPISSNMLFEALLDAKAV-RA----AKMVRDIAGFIPDSASLEQYVKCLCGVGFIEEAI 176

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALID 312
           EVY  + +  I+ +       ++ C + G  E     Y +M K G   D     +  LI 
Sbjct: 177 EVYFQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVGCLIQ 236

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               +G+V   +E+L +    G+  G  +Y+ L+     AKN+    E+   M +    P
Sbjct: 237 AFCDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHLP 296

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
           T+ T   +I  LC  ++  +   V +D+K  G  P+ + Y+ ++              L 
Sbjct: 297 TIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLW 356

Query: 433 SQAKEDGVIPNLVMFKCII--GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 490
            +  + G+ PN   +  ++   + S  +E+A  L   + +   G                
Sbjct: 357 FEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYG---------------- 400

Query: 491 REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--- 547
                  T+   +++S++    +     ++ +++ E  G+ ADA+  +   SLI GF   
Sbjct: 401 -----TTTVTCNKIISELCSRGKSDEAFEVFKKMSET-GIQADAITYN---SLIRGFCKE 451

Query: 548 GEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 590
           G+ D R  +LL E  +    P VS  E+ ++   +  +   AK
Sbjct: 452 GKVDER-MNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAK 493



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 78/232 (33%), Gaps = 44/232 (18%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A D    +  Y  LI    + G       LL DM  KGL      Y        KS    
Sbjct: 466 AQDPQPSVSLYELLIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGD-F 524

Query: 78  KEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +     +    N     T +T N ++S   S   S+ A ++ + + E G+KAD   Y +L
Sbjct: 525 EHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSL 584

Query: 134 ITTCAKSGKVDAMFEVFHE-----------------------------------MVNAGI 158
           I    K GKV     + +E                                   MV+ GI
Sbjct: 585 IRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGI 644

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           EP+ +    LI G  K G+  +       M    +KP +  F  L     QS
Sbjct: 645 EPHANLREHLISGLCKQGRATEGMDRLMGMLENKIKPKKAAFEDLAECLIQS 696


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 179/414 (43%), Gaps = 22/414 (5%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           +  + EA  FF  +  P +  F  LM+ +C   +  E    + R+V++ GL+ +   Y T
Sbjct: 159 EDRVSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVED-GLQPNQITYGT 217

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           ++    K G   +   +  +M     I+PNV  Y A+IDG  K G+   A   +  M+ K
Sbjct: 218 IVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEK 277

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + P+   +N +I     SG    A  +L EM      + PD +T   L+ A    G+  
Sbjct: 278 GISPNLFTYNCMINGFCSSGRWSEAQRLLREMFE--RKMSPDVVTFSVLINALVKEGKFF 335

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A E+Y  +    I      Y   I+  S+    + A  ++  M  KG  PD +  S LI
Sbjct: 336 EAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILI 395

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D    A +V+   ++L E   +G+    I+Y++L+       N   AL+L + M S  + 
Sbjct: 396 DGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVC 455

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-----------PNTITYSILLVACE 420
           P V T N L+  LC+  +L   +E+   M+   +            P+  TY+IL+    
Sbjct: 456 PNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLI 515

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 473
            +        L  +    G++P+ + +  +I G+C     K   L+E    F+S
Sbjct: 516 NEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLC-----KQSRLDEATQMFDS 564



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 191/461 (41%), Gaps = 33/461 (7%)

Query: 25  VSEQLHSY---------------NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN 69
           VSE LH +               N L R+GR+ E + LL+ M   GL      Y      
Sbjct: 162 VSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 221

Query: 70  VCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +CK    +       K+       P +  ++ ++           A  +   +QE G+  
Sbjct: 222 MCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISP 281

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           +   Y  +I     SG+      +  EM    + P+V T+  LI+   K G+  +A   Y
Sbjct: 282 NLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELY 341

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M  + + P+ + +N++I    +   +D A  +   M  +     PD IT   L+    
Sbjct: 342 NEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATK--GCSPDVITFSILIDGYC 399

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            A +VD   ++   + +  +      YT  I+   Q G+   A  +  +M   GV P+ V
Sbjct: 400 GAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVV 459

Query: 306 FLSALIDFAGHAGKVEAA---FEILQEAKN--------QGISVGIISYSSLMGACSNAKN 354
             + L+D   + GK++ A   F+++Q++K           +   + +Y+ L+    N   
Sbjct: 460 TCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGK 519

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           + +A ELYE M    L P   T N++I  LC   +L +  ++   M S G  P+ +T++ 
Sbjct: 520 FSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTT 579

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           L+    +   V  GL +  +    G++ N + ++ +I G C
Sbjct: 580 LINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFC 620



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 165/373 (44%), Gaps = 39/373 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L+++G+  E  +L  +M  +G++     Y++      K Q  +  A R F L+     
Sbjct: 326 NALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSK-QNRLDAAERMFYLMATKGC 384

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + TF++L+     +K  +   ++L  +   GL A+   YTTLI    + G ++A  +
Sbjct: 385 SPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALD 444

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM+++G+ PNV T   L+DG    G++  A   + +M+   +  D            
Sbjct: 445 LLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLD------------ 492

Query: 209 QSGAVDRAFDVLAEMNAEVHP---VDPDHITIGALMKACANAGQVDRAREVYK-MIHKYN 264
                              HP   V+PD  T   L+    N G+   A E+Y+ M H+  
Sbjct: 493 -----------------ASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGL 535

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +  T    ++    C Q+   + A  ++D M  KG  PD V  + LI+     G+V    
Sbjct: 536 VPDTITYNSVIDGLCKQS-RLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGL 594

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+  E   +GI    I+Y +L+       N   AL++++ M S  + P   T+  ++T L
Sbjct: 595 EVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 654

Query: 385 CDGDQLPKTMEVL 397
              ++L + ++ L
Sbjct: 655 WSKEELKRAVQCL 667



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 158/363 (43%), Gaps = 6/363 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +F +L+    S      A      + + G       ++TL+       +V      FH++
Sbjct: 113 SFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI 172

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                +PNV  +  L++G  + G+V +A      M    ++P+++ +  ++    + G  
Sbjct: 173 C----KPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDT 228

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++L +M  EV  + P+ +   A++      G+   A+ ++  + +  I      Y 
Sbjct: 229 VSALNLLRKME-EVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYN 287

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             IN    +G W  A  +  +M ++ + PD V  S LI+     GK   A E+  E   +
Sbjct: 288 CMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPR 347

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI    I+Y+S++   S       A  ++  M +    P V T + LI   C   ++   
Sbjct: 348 GIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDG 407

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
           M++L +M   GL  NTITY+ L+    +  ++   L LL +    GV PN+V    ++ G
Sbjct: 408 MKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDG 467

Query: 453 MCS 455
           +C+
Sbjct: 468 LCN 470



 Score = 41.2 bits (95), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 5/117 (4%)

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           +I +  L+G     +     + L+  M+  ++   + +   LI   C   +LP  +    
Sbjct: 76  VIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFG 135

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            +  LG  P+ +T+S LL     +D V   L    Q  +    PN++ F  ++ G+C
Sbjct: 136 KITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICK----PNVIAFTTLMNGLC 188


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 185/417 (44%), Gaps = 11/417 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +  R+ E   LLE M   G       Y      +CK Q  + +A+  F+L+      P
Sbjct: 229 LCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVINGLCK-QGQVDDAYELFQLMERRNCPP 287

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T N+L+     +K  E A Q+   ++E G   D   Y +LI    KS +VD  F++F
Sbjct: 288 NVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLF 347

Query: 151 HEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +  +G+   N  TY  L  G A  G++A A   + ++  K   PD   + +LI    +
Sbjct: 348 QTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCK 407

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +       +++ EM ++  P  P   T+ A++         +RA +++  +         
Sbjct: 408 TSRAVEVVELVEEMASKGFP--PRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDA 465

Query: 270 EVYTIAINCCSQTGDWEFACSVYD---DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            +Y + +   ++      A +V +   D   +   P    + AL++     G+ + A ++
Sbjct: 466 LIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQL 525

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L +   +G +  + SY+ L+   S  + W +A +++E M S    P +ST+N +I+ LC 
Sbjct: 526 LHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCS 585

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
             ++    E++  M  LG CP+  T + L+    +    ++   LL +  E G+ PN
Sbjct: 586 AAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPN 642



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 130/562 (23%), Positives = 237/562 (42%), Gaps = 71/562 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + G   +   +LED+ ++G+ + D  +      +C    +++ A +   +V      P
Sbjct: 123 LCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTP 182

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+  FN++++    +KD + A+++L ++ E G   +   +T LIT   K+ +V    ++ 
Sbjct: 183 TVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLL 242

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +MV  G  PNV TY  +I+G  K GQV  A+  + +M  +N  P+ V  N LI    ++
Sbjct: 243 EKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKA 302

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             ++ A  +   M        PD IT  +L+     + QVD A ++++ I +  +     
Sbjct: 303 KRIEEARQLYHRMRET--GCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANA 360

Query: 271 V-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           V Y+   +  +  G    AC ++  +  KG  PD                          
Sbjct: 361 VTYSTLFHGYAALGRMADACRIFSMLVDKGFSPD-------------------------- 394

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                    + +Y+SL+          + +EL E M S    P V+T++A++  L +G+ 
Sbjct: 395 ---------LATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNH 445

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA--KED-------GV 440
             + +++   M + G   + + Y++++    R       L +L Q   K D         
Sbjct: 446 TERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSA 505

Query: 441 IPNLVMFKCIIGMCSRRYEKARTLNEH-----VLSFN---SGRPQIENKWTSLALMVYRE 492
           +  LV   C +G      +    ++E      V S+N   SG  +++ +W   A  V+  
Sbjct: 506 VDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQ-RWDE-ATQVFEA 563

Query: 493 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE---NLGVSADALKRSNLCSLIDGF-- 547
            + AG  P +  V+ V+  L      D    LV+    LG   D ++  N  +LI G+  
Sbjct: 564 MVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPD-IETCN--TLIGGYCK 620

Query: 548 -GEYDPRAFSLLEEAASFGIVP 568
            G  D  A  LLEE    G+ P
Sbjct: 621 SGRAD-LARKLLEEMTEAGLEP 641



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 162/352 (46%), Gaps = 4/352 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+ +L+   +S+ D + A Q+L  ++  G + +  ++TTL+     +G+V    E 
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M      P+V TY AL+    KAG+  +A G    M ++   PD V F+ LI    +
Sbjct: 67  FRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125

Query: 210 SGAVDRAFDVLAE-MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G+ ++AF VL + +   +   D    TI  + + C     V+ A +V  ++       T
Sbjct: 126 FGSEEQAFRVLEDVIQRGMGNSDAAFETI--IQRLCNKYNSVELASKVLGVVIAKGFTPT 183

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             ++ + IN   +  D + A  + + M +KG +P+    + LI     A +V  A ++L+
Sbjct: 184 VLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLE 243

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +    G S  +++YS+++           A EL++ M+     P V T N LI  LC   
Sbjct: 244 KMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAK 303

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           ++ +  ++   M+  G  P+ ITY+ L+    +   V+    L     E GV
Sbjct: 304 RIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 355



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 156/352 (44%), Gaps = 7/352 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L +  RI E   L   M   G       Y++    +CKS + + EAF+ F+ +P   +S 
Sbjct: 299 LCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQ-VDEAFQLFQTIPESGVSA 357

Query: 94  ----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
               T++ L    A+      A ++  ++ + G   D   YT+LI    K+ +   + E+
Sbjct: 358 ANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVEL 417

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM + G  P V+T  A++ G  +     +A   +  M ++    D +++N ++    +
Sbjct: 418 VEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMAR 477

Query: 210 SGAVDRAFDVLAE-MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   ++A  VL + ++      +P    + AL+++    G+ D A+++   + +      
Sbjct: 478 ASKHNKALAVLEQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAA 537

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++  S+   W+ A  V++ M   G  P+   ++ +I +   A KV+ A+E++Q
Sbjct: 538 VSSYNGLLSGLSRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQ 597

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
                G    I + ++L+G    +     A +L E M    L+P  +T + L
Sbjct: 598 RMSKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEPNDTTHDLL 649



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 1/158 (0%)

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
           +P++     LI     AG ++ A ++L+E K+ G     + +++LM    +A    +ALE
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
            +  M      P V T  AL+ ALC   +  +   +L +M + G  P+T+T+S L+    
Sbjct: 66  HFRAMAK-DCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLC 124

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 458
           +    E    +L    + G+  +   F+ II     +Y
Sbjct: 125 KFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKY 162


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 154/329 (46%), Gaps = 9/329 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  LI    +  ++D  +++  EM+     P+   Y  LI G  K G++  A     +M 
Sbjct: 95  YCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMML 154

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            ++  PD + + +LI  C Q+ A+D A  ++ +M      + PD +   AL+       Q
Sbjct: 155 ERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKE--SGLTPDTVAYNALLNGLCKQNQ 212

Query: 250 VDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           ++   EV K++ +    G  P+   Y   + C  ++G +E A  + + M +K   PD V 
Sbjct: 213 LE---EVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVT 269

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            ++L+D      K++ A  +L++   +  +  +I+Y++L+G  S A     A  + E M 
Sbjct: 270 YNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMF 329

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              + P + T N L+  LC   +L +  E+L  M      P+ +TYSIL+    +   V+
Sbjct: 330 KAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVD 389

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
              +LL    E G  PNLV F  +I G C
Sbjct: 390 DARLLLEMMLERGCQPNLVTFNTMIDGFC 418



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 199/435 (45%), Gaps = 15/435 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L +Q ++ E   LLE+M   G       Y+     +C+S K  +      K++     
Sbjct: 205 NGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCG 264

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+N LM   C  SK  E A ++L  +           YTTLI   +++ ++   + 
Sbjct: 265 PDVVTYNSLMDGFCKVSKMDE-AERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYR 323

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  +M  AGI P++ TY  L+DG  KAG++ +A     +M  K+  PD V ++ L+    
Sbjct: 324 VMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLC 383

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G VD A  +L EM  E     P+ +T   ++     AG+VD   +V +++ +  +  T
Sbjct: 384 KLGKVDDA-RLLLEMMLE-RGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKE--VSCT 439

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P+V T +    +    +  A  + D     G+ PD+   S++++     GKVE A E++ 
Sbjct: 440 PDVVTYS----TLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMD 495

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               QG       Y+ ++G   + +   +AL++ + M     +P + T + LI  LC   
Sbjct: 496 LMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTK 555

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++   + VL  M   G  P+  TY+ L+    + + ++         ++ G  P+ + + 
Sbjct: 556 RVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYN 615

Query: 449 CII-GMC-SRRYEKA 461
            +I G C S   EKA
Sbjct: 616 ILISGFCQSGNVEKA 630



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 200/459 (43%), Gaps = 27/459 (5%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
            Y      +C+ Q+ I EA++    +     +P  + +N L++        + A  VL++
Sbjct: 94  TYCILIHGLCQCQR-IDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKM 152

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           + E     D   YT+LI  C ++  +D   ++  +M  +G+ P+   Y AL++G  K  Q
Sbjct: 153 MLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQ 212

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           + +       M     +PD   +N ++    +SG  + A  +L +M  +     PD +T 
Sbjct: 213 LEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEK--KCGPDVVTY 270

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            +LM       ++D A  + + +       T   YT  I   S+      A  V +DM K
Sbjct: 271 NSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFK 330

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G+ PD V  + L+D    AGK+E A E+L+    +  +  +++YS L+           
Sbjct: 331 AGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDD 390

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A  L E M     +P + T N +I   C   ++ +  +VL  MK +   P+ +TYS L+ 
Sbjct: 391 ARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLID 450

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGR 475
              + + ++    +L      G+ P+   +  ++ G+CS  + E+A+ + +  L    G 
Sbjct: 451 GYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMD--LMTKQGC 502

Query: 476 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 514
           P   + +          A++ G +  VE   + L  LQ+
Sbjct: 503 PPTSSHY----------ALIIGGLCDVERGDEALKMLQV 531



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 175/367 (47%), Gaps = 27/367 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LI    R  R+++   ++EDM + G+      Y+     +CK+ K ++EA    ++
Sbjct: 304 TYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGK-LEEAHELLEV 362

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+++L++        + A  +L ++ E G + +   + T+I    K+GK
Sbjct: 363 MVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGK 422

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD   +V   M      P+V TY  LIDG  KA ++  AF   GI       PD+  +++
Sbjct: 423 VDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGI------SPDKASYSS 476

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDH--ITIGALMKACANAGQVDRAREVYKMI 260
           ++     +G V+ A +V+  M  +  P    H  + IG L         V+R  E  KM+
Sbjct: 477 MLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLC-------DVERGDEALKML 529

Query: 261 HKYNIKGT-PEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
              + +G  P +YT  I IN   +T   E A +V D M +KG +PD    ++LID     
Sbjct: 530 QVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKI 589

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            K++AA++  +  ++ G     ++Y+ L+     + N +KA+E+ + M      P  +T 
Sbjct: 590 NKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATY 649

Query: 378 NALITAL 384
            +L+ +L
Sbjct: 650 FSLMRSL 656



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 174/396 (43%), Gaps = 21/396 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR---- 82
           +YN L+    +  ++ E   LLEDM  +        Y        ++ + + +A+R    
Sbjct: 269 TYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADR-LADAYRVMED 327

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            FK   +P L T+N L+     +   E A ++L ++ E     D   Y+ L+    K GK
Sbjct: 328 MFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGK 387

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD    +   M+  G +PN+ T+  +IDG  KAG+V +      +M+  +  PD V ++ 
Sbjct: 388 VDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYST 447

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    ++  +  AF +L         + PD  +  ++++   + G+V+ A+EV  ++ K
Sbjct: 448 LIDGYCKANRMQDAFAILG--------ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTK 499

Query: 263 YNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                T   Y + I   C  + GD   A  +   M+++G  P+    S LI+      +V
Sbjct: 500 QGCPPTSSHYALIIGGLCDVERGDE--ALKMLQVMSERGCEPNLYTYSILINGLCKTKRV 557

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E A  +L     +G    + +Y+SL+           A + ++ M+    +P     N L
Sbjct: 558 EDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNIL 617

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           I+  C    + K +EV+  M   G  P+  TY  L+
Sbjct: 618 ISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLM 653



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 203/464 (43%), Gaps = 52/464 (11%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           RI E   LL++M +K       VY+     +CK  K I  A    K++      P + T+
Sbjct: 107 RIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGK-IDAARNVLKMMLERSCVPDVITY 165

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
             L+  C  +   + A +++  ++E+GL  D   Y  L+    K  +++ + ++  EMV 
Sbjct: 166 TSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVE 225

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           AG EP+  +Y  ++    ++G+  +A      M  K   PD V +N+L+    +   +D 
Sbjct: 226 AGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDE 285

Query: 216 AFDVLAEM-NAEVHP--------------------------------VDPDHITIGALMK 242
           A  +L +M      P                                + PD +T   L+ 
Sbjct: 286 AERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLD 345

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
               AG+++ A E+ +++ + +       Y+I +N   + G  + A  + + M ++G  P
Sbjct: 346 GLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQP 405

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           + V  + +ID    AGKV+   ++L+  K    +  +++YS+L+     A   Q A  + 
Sbjct: 406 NLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAI- 464

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVAC 419
                + + P  ++ ++++  LC   ++ +  EV+  M   G  P +  Y+++   L   
Sbjct: 465 -----LGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDV 519

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA 461
           ER D+    L +L    E G  PNL  +  +I G+C ++R E A
Sbjct: 520 ERGDE---ALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDA 560



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 156/341 (45%), Gaps = 10/341 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  LIT  +++G    + E+ +EM+     P+V T+  ++    + G + +A   +   R
Sbjct: 27  YGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHF---R 83

Query: 190 SKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANA 247
            K    P    +  LI    Q   +D A+ +L EM   + HP   D      L+      
Sbjct: 84  GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHP---DAAVYNCLIAGLCKM 140

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G++D AR V KM+ + +       YT  I  C QT   + A  + + M + G+ PD V  
Sbjct: 141 GKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAY 200

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           +AL++      ++E   ++L+E    G      SY++++     +  +++A ++ E M  
Sbjct: 201 NALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIE 260

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
            K  P V T N+L+   C   ++ +   +L DM      P  ITY+ L+    R D +  
Sbjct: 261 KKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLAD 320

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNE 466
              ++    + G+ P+LV + C++ G+C + + E+A  L E
Sbjct: 321 AYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLE 361


>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
 gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
          Length = 899

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/530 (21%), Positives = 230/530 (43%), Gaps = 20/530 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +YN +I    + GR+ + + +   MER G    D  Y+   + +C  +    E 
Sbjct: 226 VVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKPDEAEE 285

Query: 81  FRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
                +V    PT+ TF  +++    ++  + A +V   +  +  K D + Y  LI    
Sbjct: 286 LLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLINVLI 345

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K  +     E   EM   G+ PNV  Y ++IDG  K G+V  A   + +M  +  +P+  
Sbjct: 346 KKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAW 405

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +++LI    Q   + +A  ++ +M  +   + P  IT   L++      + D A  +++
Sbjct: 406 TYSSLIYGLIQDQKLHKAMALITKMQED--GITPGVITYTTLIQGQCKKHEFDNAFRLFE 463

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
           M+ +  +    + Y +  +   ++G  E A   Y  + +KGV+  +V  ++L+D    AG
Sbjct: 464 MMEQNGLTPDEQAYNVLTHALCKSGRAEEA---YSFLVRKGVVLTKVTYTSLVDGFSKAG 520

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
             + A  ++++  N+G      +YS L+ A    K   +AL + + M    +K  +    
Sbjct: 521 NTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYT 580

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            +I+ +    +      + ++M S G  P+  TY++ + +  +   +E    L+ + + D
Sbjct: 581 IIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERD 640

Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN-SGRPQIENKWTSLALMVYREAIVAG 497
           GV P++V +   I  C       R  +      + S  P     W  L   +    + A 
Sbjct: 641 GVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAH 700

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
            + T    S +   ++L     + ER+V++ G++  A+  S   S+I GF
Sbjct: 701 YVDT----SGMWNWIELDTVWQLLERMVKH-GLNPTAVTYS---SIIAGF 742



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 142/320 (44%), Gaps = 6/320 (1%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           ++  +C +    E    ++ +VQ+ G   +   YT LI    K G++     V  EM   
Sbjct: 166 LIQGLCETRCVREALVLLVMMVQD-GCSLNLHTYTLLIKGLCKEGRIHGARRVLEEMPLR 224

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSGAVDR 215
           G+ P+V TY A+IDG  K+G++  A G   +M      PD   +N LI   CG+    D 
Sbjct: 225 GVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERNGCNPDDWTYNILIYGLCGEKP--DE 282

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A ++L +  A V    P  IT   ++     A ++D A  V   +   N K   + Y + 
Sbjct: 283 AEELLND--AIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVL 340

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           IN   +   ++ A     +M   G+ P+ V  +++ID     GKV AA E+ +  +++G 
Sbjct: 341 INVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGC 400

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
                +YSSL+      +   KA+ L   M+   + P V T   LI   C   +      
Sbjct: 401 RPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFR 460

Query: 396 VLSDMKSLGLCPNTITYSIL 415
           +   M+  GL P+   Y++L
Sbjct: 461 LFEMMEQNGLTPDEQAYNVL 480



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 154/390 (39%), Gaps = 58/390 (14%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF-------------------FKLV 87
           L E ME+ GL   ++ Y+     +CKS +A +EA+ F                   F   
Sbjct: 461 LFEMMEQNGLTPDEQAYNVLTHALCKSGRA-EEAYSFLVRKGVVLTKVTYTSLVDGFSKA 519

Query: 88  PNPTLS-----------------TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
            N   +                 T+++L+      K    A  +L  +  +G+K +   Y
Sbjct: 520 GNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAY 579

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T +I+   K GK D    +F+EM+++G +P+  TY   I    K GQ+ +A    G M  
Sbjct: 580 TIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMER 639

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
             V PD V +N  I  CG  G +DRAF  L  M       +P++ T   L+K       V
Sbjct: 640 DGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDA--SCEPNYWTYWILLKHFLKMSLV 697

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D         H  +  G         N       W+    + + M K G+ P  V  S++
Sbjct: 698 D--------AHYVDTSGM-------WNWIELDTVWQ----LLERMVKHGLNPTAVTYSSI 738

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I     A ++E A  +    + + IS     Y+ L+  C + K + KA+     M     
Sbjct: 739 IAGFCKATRLEEACVLFDHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGF 798

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +P + + + LI  LCD     K   +  D+
Sbjct: 799 QPHLESYHYLIVGLCDEGDYDKAKSLFCDL 828



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/470 (21%), Positives = 192/470 (40%), Gaps = 29/470 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N LI++ R  E  + + +M   GL     +Y +     CK  K +  A   F+L+ +   
Sbjct: 342 NVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGK-VGAALEVFRLMEHEGC 400

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T++ L+      +    A  ++  +QE G+      YTTLI    K  + D  F 
Sbjct: 401 RPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFR 460

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  M   G+ P+   Y  L     K+G   +A  AY  +  K V   +V + +L+    
Sbjct: 461 LFEMMEQNGLTPDEQAYNVLTHALCKSG---RAEEAYSFLVRKGVVLTKVTYTSLVDGFS 517

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G  D A  ++ +M  E      D  T   L++A     +++ A  +   +    +K  
Sbjct: 518 KAGNTDFAAVLIEKMVNE--GCKADSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCN 575

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YTI I+   + G  + A S++++M   G  P     +  I      G++E A  ++ 
Sbjct: 576 IVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIG 635

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI------- 381
           E +  G++  +++Y+  +  C +     +A    + M     +P   T   L+       
Sbjct: 636 EMERDGVAPDVVTYNVFINGCGHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMS 695

Query: 382 ---------TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
                    + + +  +L    ++L  M   GL P  +TYS ++    +   +E   +L 
Sbjct: 696 LVDAHYVDTSGMWNWIELDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLF 755

Query: 433 SQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFNSGRPQIEN 480
              +   + PN  ++  +I  C   + + KA +    ++ F   +P +E+
Sbjct: 756 DHMRGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGF-QPHLES 804



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 138/351 (39%), Gaps = 39/351 (11%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
           D   A  +L ++   G + +   YT LI    ++  V     +   MV  G   N+HTY 
Sbjct: 140 DLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTYT 199

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI G  K G++  A      M  + V P    +NA+I    +SG +  A  + A M  E
Sbjct: 200 LLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALM--E 257

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
            +  +PD  T                          YNI        +    C +  D  
Sbjct: 258 RNGCNPDDWT--------------------------YNI--------LIYGLCGEKPD-- 281

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  + +D   +G  P  +  + +I+    A +++ A  +     +    + + +Y  L+
Sbjct: 282 EAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQAYGVLI 341

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                   +++A E    M +  L P V    ++I   C   ++   +EV   M+  G  
Sbjct: 342 NVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCR 401

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
           PN  TYS L+    +   +   + L+++ +EDG+ P ++ +  +I G C +
Sbjct: 402 PNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKK 452



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 148/395 (37%), Gaps = 41/395 (10%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L T+ +L+          GA +VL  +   G+      Y  +I    KSG++     +  
Sbjct: 195 LHTYTLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKA 254

Query: 152 EMVNAGIEPNVHTYGALIDG-CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            M   G  P+  TY  LI G C +    A+      I+R     P  + F  +I    ++
Sbjct: 255 LMERNGCNPDDWTYNILIYGLCGEKPDEAEELLNDAIVRG--FTPTVITFTNIINGYCKA 312

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDH--ITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             +D A  V   M +    +D     + I  L+K C    +   A+E    +    +   
Sbjct: 313 ERIDDALRVKTSMLSSNCKLDLQAYGVLINVLIKKC----RFKEAKETVSEMFANGLAPN 368

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             +YT  I+   + G    A  V+  M  +G  P+    S+LI       K+  A  ++ 
Sbjct: 369 VVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALIT 428

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + +  GI+ G+I+Y++L+        +  A  L+E M+   L P     N L  ALC   
Sbjct: 429 KMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSG 488

Query: 389 QLPKTMEVL--------------------------------SDMKSLGLCPNTITYSILL 416
           +  +    L                                  M + G   ++ TYS+LL
Sbjct: 489 RAEEAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLL 548

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            A  ++  +   L +L Q    GV  N+V +  II
Sbjct: 549 QALCKQKKLNEALSILDQMTLSGVKCNIVAYTIII 583



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 7/194 (3%)

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           GD   AC +   M   G   +E   + LI        V  A  +L      G S+ + +Y
Sbjct: 139 GDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLVMMVQDGCSLNLHTY 198

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           + L+           A  + E M    + P+V T NA+I   C   ++   + + + M+ 
Sbjct: 199 TLLIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMER 258

Query: 403 LGLCPNTITYSILLVAC--ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRY 458
            G  P+  TY+IL+     E+ D+ E    LL+ A   G  P ++ F  II G C + R 
Sbjct: 259 NGCNPDDWTYNILIYGLCGEKPDEAE---ELLNDAIVRGFTPTVITFTNIINGYCKAERI 315

Query: 459 EKARTLNEHVLSFN 472
           + A  +   +LS N
Sbjct: 316 DDALRVKTSMLSSN 329


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 153/325 (47%), Gaps = 2/325 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T++ML++      D   AF +   +  +GL+ D  +Y  LI    K G +D    +  +M
Sbjct: 454 TYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKM 513

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               ++P+   +  +I+G A AG +  A     +MR     P  + +NALI    +   V
Sbjct: 514 QKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKV 573

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            RA  VL +M+  +  + P+  T   +M+  A +G + +A E +  I +  +K    +Y 
Sbjct: 574 QRAVSVLDKMS--IAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYE 631

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++++ K  
Sbjct: 632 TLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKED 691

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+   I +Y+S + AC  A + Q+A ++ E M  + LKP V T   LI          + 
Sbjct: 692 GVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRA 751

Query: 394 MEVLSDMKSLGLCPNTITYSILLVA 418
           ++   +MK  GL P+  +Y  L+ +
Sbjct: 752 LKCFEEMKLAGLKPDEASYHCLVTS 776



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 153/343 (44%), Gaps = 2/343 (0%)

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           V   ++E G K     Y  L+    K GKV     +  EM + GI+ N  TY  LI+G  
Sbjct: 404 VFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFI 463

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
                A AF  +  M    ++PDR ++N LI A  + G +DRA  +L +M  E   + P 
Sbjct: 464 HLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKER--MQPS 521

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
           +     +++  A AG +  A +   ++ +     T   Y   I+   +    + A SV D
Sbjct: 522 NRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLD 581

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M+  G+ P+E   + ++     +G +  AFE   + K  G+ + +  Y +L+ AC  + 
Sbjct: 582 KMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSG 641

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             Q AL +   M   K+       N LI        + +  +++  MK  G+ PN  TY+
Sbjct: 642 RMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYT 701

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             + AC +  D++    ++ +  + G+ PN+  +  +I   +R
Sbjct: 702 SYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWAR 744



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 160/359 (44%), Gaps = 3/359 (0%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N++ + C S  + E A +++R ++E G+ A   +Y +++         +    VF  +  
Sbjct: 352 NIIHAHCQSG-NMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKE 410

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G +P++ +YG L++   K G+VAKA      M S  +K +   ++ LI           
Sbjct: 411 CGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN 470

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           AF +  EM      + PD      L++A    G +DRA  + + + K  ++ +   +   
Sbjct: 471 AFAIFEEMLRS--GLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPI 528

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I   +  GD + A    D M + G +P  +  +ALI       KV+ A  +L +    GI
Sbjct: 529 IEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGI 588

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           +    +Y+ +M   + + +  KA E +  +K   LK  V     L+ A C   ++   + 
Sbjct: 589 TPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 648

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           V  +M    +  NT  Y+IL+    R+ DV     L+ Q KEDGV PN+  +   I  C
Sbjct: 649 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINAC 707



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 178/404 (44%), Gaps = 33/404 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +P P+   F +++   A   D   A      ++  G++ +  ++T+L+   A +  +
Sbjct: 234 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 293

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                   EM + G+E  + TY  LI G AK      A   +   ++K    + ++++ +
Sbjct: 294 RGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYSNI 353

Query: 204 ITACGQSGAVDRAFDVLAEMNAEV--HPVD------------------------------ 231
           I A  QSG ++RA +++ EM  +    P+D                              
Sbjct: 354 IHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGF 413

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            P  I+ G L+      G+V +A  + K +    IK   + Y++ IN      D+  A +
Sbjct: 414 KPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFA 473

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           ++++M + G+ PD    + LI+     G ++ A  IL++ + + +     ++  ++   +
Sbjct: 474 IFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYA 533

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A + + AL+  + M+     PTV T NALI  L    ++ + + VL  M   G+ PN  
Sbjct: 534 VAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEH 593

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+I++       D+       ++ KE G+  ++ +++ ++  C
Sbjct: 594 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 637



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 141/341 (41%), Gaps = 40/341 (11%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           + E+M R GL     +Y+      CK     +AI    +  K    P+   F  ++   A
Sbjct: 474 IFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYA 533

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
            + D + A   L L++ +G       Y  LI    +  KV     V  +M  AGI PN H
Sbjct: 534 VAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEH 593

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           TY  ++ G A +G + KAF  +  ++   +K D  ++  L+ AC +SG +  A  V  EM
Sbjct: 594 TYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 653

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
           + +  P +        L+   A  G V  A ++ K + +  +      YT  IN C + G
Sbjct: 654 SFQKIPRNT--FIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAG 711

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           D + A  V ++M   G+ P+                                   + +Y+
Sbjct: 712 DMQRAEKVIEEMVDVGLKPN-----------------------------------VKTYT 736

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +L+   +      +AL+ +E MK   LKP  ++ + L+T+L
Sbjct: 737 TLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTSL 777



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 107/238 (44%), Gaps = 13/238 (5%)

Query: 27  EQLHSYNRLIRQ--------GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           E++   NR  R         G +   +D L+ M R G +     Y+A    + +  K  +
Sbjct: 516 ERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQR 575

Query: 79  EAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
                 K+      P   T+ ++M   A+S D   AF+    ++E+GLK D  +Y TL+ 
Sbjct: 576 AVSVLDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLR 635

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
            C KSG++ +   V  EM    I  N   Y  LIDG A+ G V +A      M+   V P
Sbjct: 636 ACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPP 695

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           +   + + I AC ++G + RA  V+ EM  +V  + P+  T   L+K  A     DRA
Sbjct: 696 NIHTYTSYINACCKAGDMQRAEKVIEEM-VDVG-LKPNVKTYTTLIKGWARVSLPDRA 751



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VP P + T+   ++ C  + D + A +V+  + + GLK + K YTTLI   A+    D  
Sbjct: 693 VP-PNIHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRA 751

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            + F EM  AG++P+  +Y  L+        V +     GI+
Sbjct: 752 LKCFEEMKLAGLKPDEASYHCLVTSLLSRATVMEGSTYTGII 793


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 164/362 (45%), Gaps = 2/362 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+L ++N L+         + A+ +L+ + E GLK +   YT LI    K G  +  F V
Sbjct: 462 PSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVV 521

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M+ A I P  HT+  +I+G  K G+V++          +      + +N++I    +
Sbjct: 522 FEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFK 581

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            GAVD A     EM      + PD IT  +L+     + ++  A E++  +    +K   
Sbjct: 582 EGAVDSALLAYREMCES--GISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDV 639

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  I+   +  D E A   + ++   G+ P+ V  +++I    H   +EAA  + QE
Sbjct: 640 VAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQE 699

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                +   +  Y+S++G          AL+LY  M S  + P +     LI  L +  Q
Sbjct: 700 MIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQ 759

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L    ++L +M    + P+ + Y+IL+    R+ +++    L  +  + G++P+   +  
Sbjct: 760 LENASKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDI 819

Query: 450 II 451
           ++
Sbjct: 820 LV 821



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 202/474 (42%), Gaps = 22/474 (4%)

Query: 46  DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL-----VPNPTLSTFNMLMS 100
           +LL++M   G +     Y A     C  Q    EA R         +P   + T +++  
Sbjct: 276 ELLKEMREFGWVPSKGTYTAVIV-ACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKG 334

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
            C    D   A Q+   V E G+  D  +++ LI  C+K G ++  +E++  M   GI+P
Sbjct: 335 YCVLG-DVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQP 393

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           NV    +L++G  +   +  A+G +       +  + V +N L+   G+ G V+ A ++ 
Sbjct: 394 NVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVTYNILLKWLGELGKVNEACNLW 452

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
            +M ++   + P  ++   L+      G +D+A  + K I +  +K     YT+ I+   
Sbjct: 453 EKMVSK--GITPSLVSYNNLILGHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFF 510

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           + GD E A  V++ M    + P +   + +I+  G  G+V    + L     QG     I
Sbjct: 511 KKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSI 570

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +Y+S++           AL  Y  M    + P V T  +LI  LC  +++   +E+ SDM
Sbjct: 571 TYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDM 630

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 460
           K  G+  + + YS L+    +  D+E      ++  + G+ PN V++  +I         
Sbjct: 631 KYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNM 690

Query: 461 ARTLNEHVLSFNSGRPQIENKWT------------SLALMVYREAIVAGTIPTV 502
              LN H     +  P     +T            SLAL +Y E +    +P +
Sbjct: 691 EAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSKDIVPDI 744



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/427 (21%), Positives = 194/427 (45%), Gaps = 13/427 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL-- 92
           ++R+  + +   L ++M  +G+       H      C  +   +E  +FFK      L  
Sbjct: 195 MVRRNMVCDARQLYDEMVERGIYGDCYTLHV-VMRACMKEGKFEEVEKFFKEAKGRGLEV 253

Query: 93  --STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
             + +++L+       D   A ++L+ ++E G       YT +I  C K G       + 
Sbjct: 254 DAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLK 313

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EMV+ G+  NV    +L+ G    G V  A   +  +    V PD V+F+ LI  C + 
Sbjct: 314 DEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKV 373

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +++A+++   M  ++  + P+   + +L++       ++ A  ++    ++ I     
Sbjct: 374 GDMEKAYELYTRM--KLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGITNVV- 430

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK--VEAAFEILQ 328
            Y I +    + G    AC++++ M  KG+ P  V  + LI   GH  K  ++ A+ +L+
Sbjct: 431 TYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLI--LGHCKKGCMDKAYSMLK 488

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G+    ++Y+ L+       + ++A  ++E M +  + PT  T N +I  L    
Sbjct: 489 SILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTG 548

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ +T + L++    G    +ITY+ ++    ++  V+  L+   +  E G+ P+++ + 
Sbjct: 549 RVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVITYT 608

Query: 449 CII-GMC 454
            +I G+C
Sbjct: 609 SLIDGLC 615



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 130/531 (24%), Positives = 224/531 (42%), Gaps = 42/531 (7%)

Query: 43  ECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFF---KLVPNPTLSTFN 96
           EC  LLE   R G     +V++     F  V K   A+ E FR      LVP   +   N
Sbjct: 135 EC--LLECSGRYGFESDSRVFNYLLKSFVRVNKITDAV-ECFRTMLEHDLVP--WVPIMN 189

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
            L++          A Q+   + E G+  DC     ++  C K GK + + + F E    
Sbjct: 190 NLLTAMVRRNMVCDARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGR 249

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G+E +   Y  L+    +   +  A      MR     P +  + A+I AC + G    A
Sbjct: 250 GLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEA 309

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
             +  EM +   P++   I   +LMK     G V+ A +++  + +  +     ++++ I
Sbjct: 310 LRLKDEMVSVGLPMNV--IVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLI 367

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
           N CS+ GD E A  +Y  M   G+ P+   +++L++       +E A+ +  EA   GI+
Sbjct: 368 NGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT 427

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             +++Y+ L+          +A  L+E M S  + P++ + N LI   C    + K   +
Sbjct: 428 -NVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSM 486

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GM 453
           L  +   GL PN +TY++L+    +K D E   ++  Q     + P    F  +I   G 
Sbjct: 487 LKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGK 546

Query: 454 CSRRYEKARTLNEHV--------LSFNSGRPQ-IENKWTSLALMVYREAIVAGTIPTVEV 504
             R  E    LN  +        +++NS      +      AL+ YRE   +G  P V  
Sbjct: 547 TGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCESGISPDVIT 606

Query: 505 VSKVLG--C------LQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
            + ++   C      L L  ++D++ +     G+  D +  S   +LIDGF
Sbjct: 607 YTSLIDGLCKSNKIGLALEMHSDMKYK-----GMKLDVVAYS---ALIDGF 649



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 140/299 (46%), Gaps = 11/299 (3%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A +++   H++N +I    + GR+SE  D L +  ++G +     Y++      K + A+
Sbjct: 527 AANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFK-EGAV 585

Query: 78  KEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
             A   ++ +     +P + T+  L+     S     A ++   ++  G+K D   Y+ L
Sbjct: 586 DSALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSAL 645

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    K   +++  + F E+++ G+ PN   Y ++I G      +  A   +  M    V
Sbjct: 646 IDGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKV 705

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
             D  V+ ++I    + G +  A D+ +EM ++   + PD +    L+   +N GQ++ A
Sbjct: 706 PCDLQVYTSIIGGLLKEGKLSLALDLYSEMLSK--DIVPDIVMYTVLINGLSNNGQLENA 763

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
            ++ K +   NI  +  VY I I    + G+ + A  ++D+M  KG++PD+     L++
Sbjct: 764 SKILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVN 822



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/408 (21%), Positives = 167/408 (40%), Gaps = 39/408 (9%)

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
           G YG       + D  VFN L+ +  +   +  A +    M    H + P    +  L+ 
Sbjct: 142 GRYGF------ESDSRVFNYLLKSFVRVNKITDAVECFRTMLE--HDLVPWVPIMNNLLT 193

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
           A      V  AR++Y  + +  I G      + +  C + G +E     + +   +G+  
Sbjct: 194 AMVRRNMVCDARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEV 253

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D    S L+        +  A E+L+E +  G      +Y++++ AC    N+ +AL L 
Sbjct: 254 DAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLK 313

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           + M S+ L   V    +L+   C    +   +++  ++   G+ P+ + +S+L+  C + 
Sbjct: 314 DEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKV 373

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII------GMCSRRYEKARTLNEHVLSFNSGRP 476
            D+E    L ++ K  G+ PN+ +   ++       +    Y       EH ++ N    
Sbjct: 374 GDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGLFDEAVEHGIT-NVVTY 432

Query: 477 QIENKW------TSLALMVYREAIVAGTIPTVEVVSKVL------GCLQLPYN--ADIRE 522
            I  KW       + A  ++ + +  G  P++   + ++      GC+   Y+    I E
Sbjct: 433 NILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCKKGCMDKAYSMLKSILE 492

Query: 523 RLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLEEAASFGIVP 568
           R     G+  +A+  +    LIDGF +     RAF + E+  +  I P
Sbjct: 493 R-----GLKPNAVTYT---LLIDGFFKKGDSERAFVVFEQMMAANIAP 532


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/475 (22%), Positives = 205/475 (43%), Gaps = 49/475 (10%)

Query: 23  HD-VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           HD  S  LH+Y  LI+    +GRI +   LL++M  +G++     Y+A     CKS + +
Sbjct: 277 HDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGR-M 335

Query: 78  KEAFRFFKLVP--------------------------------------NPTLSTFNMLM 99
           K+A     L+                                        PT+ TF  L+
Sbjct: 336 KDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLI 395

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
           +    ++  + A +V   +  +  K D + Y  LI    K  ++    E  +EM   G+ 
Sbjct: 396 NGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLA 455

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PNV TY ++IDG  K G V  A   + +M  +   P+   + +LI    Q   + +A  +
Sbjct: 456 PNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMAL 515

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           + +M  +   + P  IT   L++      + D A  +++M+ +  +    + Y +  +  
Sbjct: 516 ITKMQED--GITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDAL 573

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            ++G  E A   Y  + +KGV+  +V  ++L+D    AG  + A  ++++  N+G    +
Sbjct: 574 CKSGRAEEA---YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADL 630

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            +YS L+ A    K   +AL + + M    +K  +     +I+ +    +      + ++
Sbjct: 631 YTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNE 690

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           M S G  P+  TY++ + +  +   +E    L+ + + DGV P++V +   I  C
Sbjct: 691 MISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGC 745



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 109/534 (20%), Positives = 221/534 (41%), Gaps = 67/534 (12%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ------ 74
           V   + +YN +I    + GR+ + + +   ME+ G    D  Y++  + +C  +      
Sbjct: 315 VVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEE 374

Query: 75  ---KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
               AI   F        PT+ TF  L++    ++  + A +V   +  +  K D + Y 
Sbjct: 375 LLNGAIARGF-------TPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYG 427

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            LI    K  ++    E  +EM   G+ PNV TY ++IDG  K G V  A   + +M  +
Sbjct: 428 VLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHE 487

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
              P+   + +LI    Q   + +A  ++ +M  +   + P  IT   L++      + D
Sbjct: 488 GCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQED--GITPGVITYTTLIQGQCKKHEFD 545

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A  +++M+ +  +    + Y +  +   ++G  E A   Y  + +KGV+  +V  ++L+
Sbjct: 546 NAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEA---YSFLVRKGVVLTKVTYTSLV 602

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL---------- 361
           D    AG  + A  ++++  N+G    + +YS L+ A    K   +AL +          
Sbjct: 603 DGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVK 662

Query: 362 ------------------YEHMKSI-------KLKPTVSTMNALITALCDGDQLPKTMEV 396
                             ++H KS+         KP+ +T    I++ C   ++ +   +
Sbjct: 663 CNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHL 722

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           + +M+  G+ P+ +TY+I +  C     ++     L +  +    PN   +  ++    +
Sbjct: 723 IGEMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLL----K 778

Query: 457 RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 510
            + K   +N H +  +     IE    ++   +    +  G  PTV   S ++ 
Sbjct: 779 HFLKMSLINAHYVDTSGMWNWIE---LNMVWQLLERMMKHGLNPTVVTYSSIIA 829



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 138/320 (43%), Gaps = 6/320 (1%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           ++  +C +    E    V  +V + G   +   YT LI    K G++     +  EM   
Sbjct: 255 LIQGLCEARCVREALVLVFMMVHD-GCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLR 313

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSGAVDR 215
           G+ P+V TY A+IDG  K+G++  A G   +M      PD   +N+LI   CG  G +D 
Sbjct: 314 GVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG--GKLDE 371

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A ++L    A      P  IT   L+     A ++D A  V   +   N K   + Y + 
Sbjct: 372 AEELLN--GAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVL 429

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           IN   +    + A    ++M   G+ P+ V  +++ID     G V AA E+ +  +++G 
Sbjct: 430 INVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGC 489

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
                +Y SL+      K   KA+ L   M+   + P V T   LI   C   +      
Sbjct: 490 HPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFR 549

Query: 396 VLSDMKSLGLCPNTITYSIL 415
           +   M+  GL P+   Y++L
Sbjct: 550 LFEMMEQNGLTPDEQAYNVL 569



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/470 (21%), Positives = 192/470 (40%), Gaps = 29/470 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N LI++ R+ E  + L +M   GL      Y +     CK    +  A   FKL+ +   
Sbjct: 431 NVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKV-GMVGAALEVFKLMEHEGC 489

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+  L+      K    A  ++  +QE G+      YTTLI    K  + D  F 
Sbjct: 490 HPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFR 549

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  M   G+ P+   Y  L D   K+G+  +A   Y  +  K V   +V + +L+    
Sbjct: 550 LFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEA---YSFLVRKGVVLTKVTYTSLVDGFS 606

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G  D A  ++ +M  E      D  T   L++A     +++ A  +   +    +K  
Sbjct: 607 KAGNTDFAAVLIEKMVNE--GCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCN 664

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YTI I+   + G  + A S++++M   G  P     +  I      G++E A  ++ 
Sbjct: 665 IVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIG 724

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI------- 381
           E +  G++  +++Y+  +  C +     +A    + M     +P   T   L+       
Sbjct: 725 EMERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMS 784

Query: 382 ---------TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
                    + + +  +L    ++L  M   GL P  +TYS ++    +   +E   +LL
Sbjct: 785 LINAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLL 844

Query: 433 SQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFNSGRPQIEN 480
                  + PN  ++  +I  C   + + KA +    ++ F   +PQ+E+
Sbjct: 845 DHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGF-QPQLES 893



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 162/405 (40%), Gaps = 58/405 (14%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---------------------- 84
           L E ME+ GL   ++ Y+     +CKS +A +EA+ F                       
Sbjct: 550 LFEMMEQNGLTPDEQAYNVLTDALCKSGRA-EEAYSFLVRKGVVLTKVTYTSLVDGFSKA 608

Query: 85  -----------KLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
                      K+V       L T+++L+      K    A  +L  +  +G+K +   Y
Sbjct: 609 GNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAY 668

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T +I+   K GK D    +F+EM+++G +P+  TY   I    K G++ +A    G M  
Sbjct: 669 TIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMER 728

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
             V PD V +N  I  CG  G +DRAF  L  M       +P+  T   L+K        
Sbjct: 729 DGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDA--SCEPNCWTYWLLLKHFLKM--- 783

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
                   +I+ + +  +     I +N   Q         + + M K G+ P  V  S++
Sbjct: 784 -------SLINAHYVDTSGMWNWIELNMVWQ---------LLERMMKHGLNPTVVTYSSI 827

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I     A ++E A  +L     + IS     Y+ L+  C + K + KA+     M     
Sbjct: 828 IAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGF 887

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           +P + + + LI  LCD     +   +  D+  +    N + + IL
Sbjct: 888 QPQLESYHYLIVGLCDEGDYDRAKSLFCDLLGMDYNHNEVAWKIL 932



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 173/402 (43%), Gaps = 10/402 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSV 101
           L   + ++GLL     Y+      CK + ++  A R+F L+        T +   +L+  
Sbjct: 166 LYSHLVQEGLLPDTVTYNTMIMAYCK-KGSLAIAHRYFCLLRESGMQMDTYTCNALLLGY 224

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
           C +S D   A  +L ++   G + +   YT LI    ++  V     +   MV+ G   N
Sbjct: 225 CRTS-DLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLN 283

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
           +HTY  LI G  K G++  A G    M  + V P    +NA+I    +SG +  A  + A
Sbjct: 284 LHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKA 343

Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
            M  E +  +PD  T  +L+      G++D A E+           T   +T  IN   +
Sbjct: 344 LM--EQNGCNPDDWTYNSLIYGLC-GGKLDEAEELLNGAIARGFTPTVITFTNLINGYCK 400

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
               + A  V  +M       D      LI+      +++ A E L E    G++  +++
Sbjct: 401 AERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVT 460

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           Y+S++           ALE+++ M+     P   T  +LI  L    +L K M +++ M+
Sbjct: 461 YTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQ 520

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
             G+ P  ITY+ L+    +K + +    L    +++G+ P+
Sbjct: 521 EDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPD 562



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 169/412 (41%), Gaps = 31/412 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           LI+  ++ + + L+  M+  G+      Y       CK  +    AFR F+++      P
Sbjct: 503 LIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHE-FDNAFRLFEMMEQNGLTP 561

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               +N+L      S  +E A+  L      G+      YT+L+   +K+G  D    + 
Sbjct: 562 DEQAYNVLTDALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLI 618

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +MVN G + +++TY  L+    K  ++ +A      M    VK + V +  +I+   + 
Sbjct: 619 EKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKE 678

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G  D A  +  EM +  H   P   T    + +    G+++ A  +   + +  +  TP+
Sbjct: 679 GKHDHAKSLFNEMISSGHK--PSATTYTVFISSYCKIGRIEEAEHLIGEMERDGV--TPD 734

Query: 271 V--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--------EVFL------SALIDFA 314
           V  Y I IN C   G  + A S    M      P+        + FL      +  +D +
Sbjct: 735 VVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTS 794

Query: 315 GHAGKVE--AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
           G    +E    +++L+     G++  +++YSS++     A   ++A  L +HM    + P
Sbjct: 795 GMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKDISP 854

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKD 423
                  LI   CD     K +  ++DM   G  P   +Y  L+V  C+  D
Sbjct: 855 NEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEGD 906



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 154/356 (43%), Gaps = 16/356 (4%)

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
           +++  A Q +R V    L    K Y   + +  +    + M +++  +V  G+ P+  TY
Sbjct: 123 REAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTY 182

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
             +I    K G +A A   + ++R   ++ D    NAL+    ++  + +A  +L  M  
Sbjct: 183 NTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMM-- 240

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
            +     +  +   L++    A  V  A   V+ M+H          YT+ I    + G 
Sbjct: 241 PLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHD-GCSLNLHTYTLLIKGLCKEGR 299

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
              A  + D+M  +GV+P     +A+ID    +G+++ A  I    +  G +    +Y+S
Sbjct: 300 IHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNS 359

Query: 345 LM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS- 402
           L+ G C    +  +A EL     +    PTV T   LI   C  +++   + V S+M S 
Sbjct: 360 LIYGLCGGKLD--EAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISS 417

Query: 403 ---LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
              L L    +  ++L+  C  K+  E     L++   +G+ PN+V +  II G C
Sbjct: 418 NCKLDLQAYGVLINVLIKKCRLKEAKET----LNEMFANGLAPNVVTYTSIIDGYC 469



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 45/233 (19%), Positives = 96/233 (41%), Gaps = 11/233 (4%)

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG------TPEVYTIAINCCSQT 282
           P + D + +   M +C+  G  +  RE    I      G      +P+ Y +A+    + 
Sbjct: 102 PANYDKLVLS--MISCS--GTAEDVREAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRF 157

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
              E+   +Y  + ++G++PD V  + +I      G +  A       +  G+ +   + 
Sbjct: 158 DMTEYMGKLYSHLVQEGLLPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTC 217

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           ++L+       + +KA  L   M  +  +    +   LI  LC+   + + + ++  M  
Sbjct: 218 NALLLGYCRTSDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVH 277

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            G   N  TY++L+    ++  +     LL +    GV+P++  +  +I G C
Sbjct: 278 DGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYC 330


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 198/409 (48%), Gaps = 8/409 (1%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSK 106
           M + GLL     Y+     +C +  +++EA  F   + N    P + T+N+L +      
Sbjct: 296 MIKYGLLPDVYSYNILLHGLCVA-GSMEEALEFTNDMENHGVEPDIVTYNILANGFRILG 354

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
              GA++V++ +   GL  D   YT LI    + G ++  F++  +M++ G++ ++ TY 
Sbjct: 355 LISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYT 414

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            L+    K+G++ +A      M    +KPD + ++ LI    + GAV+ A ++  EM ++
Sbjct: 415 VLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSK 474

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              + P+     A++      G +  A+  +  + K ++     +Y I I+  ++ G+  
Sbjct: 475 --RIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIG 532

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A   Y  + +KG+ P  V  ++LI      GK+  A ++L   K  G+    ++Y++LM
Sbjct: 533 EAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLM 592

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                  +     ++   M++  +KPT  T   ++  LC   +L +++++L  M + GL 
Sbjct: 593 NGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLF 652

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           P+ ITY+ ++ +  +  D++    L +Q  +  + P+ V +  +I G+C
Sbjct: 653 PDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLC 701



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/470 (22%), Positives = 207/470 (44%), Gaps = 43/470 (9%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           ++SYN L+      G + E ++   DME  G+ + D V +    N  +    I  A++  
Sbjct: 305 VYSYNILLHGLCVAGSMEEALEFTNDMENHGV-EPDIVTYNILANGFRILGLISGAWKVV 363

Query: 85  KLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +     NP L T+ +L+       + E +F++   +   GLK     YT L+++  KS
Sbjct: 364 QRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKS 423

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G++D    + HEM   G++P++ TY  LI G  K G V +A   Y  M SK + P+  V 
Sbjct: 424 GRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVC 483

Query: 201 NALITACGQSGAVDRA------------------FDVLAEMNAEV--------------- 227
           +A+I+   + GA+  A                  ++++ +  A++               
Sbjct: 484 SAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIE 543

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + P  +T  +L+      G++  A ++   I  + +  T   YT  +N   + GD   
Sbjct: 544 KGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHS 603

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
              +  +M  K + P ++  + ++      G++  + ++L+    +G+    I+Y++++ 
Sbjct: 604 MFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQ 663

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           +   A + QKA +L+  M    L+P+  T N LI  LC    L     +L  ++   +  
Sbjct: 664 SFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRL 723

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR 456
             + Y+ ++ A   K DV+  L+   Q  E G   ++  +  +I  +C R
Sbjct: 724 TKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKR 773



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/438 (22%), Positives = 196/438 (44%), Gaps = 9/438 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L RQ R+ + +  L +   +        ++A     CK   ++  A  FF ++      P
Sbjct: 245 LCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCK-MGSVDVAKSFFCMMIKYGLLP 303

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + ++N+L+     +   E A +    ++  G++ D   Y  L       G +   ++V 
Sbjct: 304 DVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVV 363

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M+  G+ P++ TY  LI G  + G + ++F     M S+ +K   V +  L+++  +S
Sbjct: 364 QRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKS 423

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D A  +L EM  EV  + PD +T   L+      G V+ A E+Y+ +    I     
Sbjct: 424 GRIDEAVILLHEM--EVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSF 481

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           V +  I+   + G    A   +D +TK  V  + +  + +ID     G +  A    ++ 
Sbjct: 482 VCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQI 541

Query: 331 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             +GIS  I++++SL+ G C   K   +A++L + +K   L PT  T   L+   C+   
Sbjct: 542 IEKGISPTIVTFNSLIYGFCKKGK-LAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGD 600

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +    ++L +M++  + P  ITY++++    ++  +   + LL      G+ P+ + +  
Sbjct: 601 MHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNT 660

Query: 450 IIGMCSRRYEKARTLNEH 467
           +I    + ++  +    H
Sbjct: 661 VIQSFCKAHDLQKAFQLH 678



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 162/377 (42%), Gaps = 46/377 (12%)

Query: 99  MSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           M  CA S+      A  VL  ++   L+     Y +L+     +   D M++V++E+  +
Sbjct: 173 MLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHT---DIMWDVYNEIKAS 229

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G+  N +T   LIDG                                   C QS   D A
Sbjct: 230 GVPQNEYTNPILIDGL----------------------------------CRQSRLQD-A 254

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
              L E   E     P  ++  ALM      G VD A+  + M+ KY +      Y I +
Sbjct: 255 VTFLRETGGE--EFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILL 312

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
           +     G  E A    +DM   GV PD V  + L +     G +  A++++Q     G++
Sbjct: 313 HGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLN 372

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             +++Y+ L+       N +++ +L E M S  LK ++ T   L+++LC   ++ + + +
Sbjct: 373 PDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVIL 432

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L +M+ +GL P+ +TYS+L+    ++  VE  + L  +     + PN  +   II   S 
Sbjct: 433 LHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAII---SG 489

Query: 457 RYEKARTLNEHVLSFNS 473
            +EK   ++E  + F+S
Sbjct: 490 LFEKG-AISEAQMYFDS 505



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 3/192 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPT 91
           L ++GR+ E + LL+ M  +GL      Y+    + CK+   QKA +   +  +    P+
Sbjct: 630 LCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPS 689

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+N+L++      + + A ++L  +Q+  ++     YTT+I      G V      FH
Sbjct: 690 PVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFH 749

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +MV  G E ++  Y A+I+   K   +  A   + +M +  + PD+ +   ++ A  +SG
Sbjct: 750 QMVERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSG 809

Query: 212 AVDRAFDVLAEM 223
             +  F++ A M
Sbjct: 810 DPNSVFEIFAMM 821


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 181/405 (44%), Gaps = 7/405 (1%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSK 106
           M +KG    +  Y      +C+  + + E    FK +      PT+ T+ +++     S 
Sbjct: 30  MPKKGCRRNEVSYTNLIHGLCEVGR-VDEGINIFKKMREDDCYPTVRTYTVIVHALFESG 88

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
               A  +   ++E G + +   YT +I    K  K++    +  EMV  G+ P+V TY 
Sbjct: 89  RRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYN 148

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           ALIDG  K G V  A     +M S +  P+   +N LI    +   V RA  +L++M   
Sbjct: 149 ALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLES 208

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
              + P  +T  +L+      G +D A  +  ++++  +      Y++ I+   + G  E
Sbjct: 209 --RLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIE 266

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  +++ + +KG+  +EV  +ALID    AGK++ A  +L     +       +Y++L+
Sbjct: 267 EANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALI 326

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                 +  Q+AL L E M    LK TV T   LI A+           +L  M S G  
Sbjct: 327 DGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQ 386

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           P+   Y+  + A   + +++    ++S   E GV+P+ + +  +I
Sbjct: 387 PDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVI 431



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 170/386 (44%), Gaps = 9/386 (2%)

Query: 77  IKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +  AF  F ++P        +S  N++  +C   +  EG   + + ++E       + YT
Sbjct: 20  VNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEG-INIFKKMREDDCYPTVRTYT 78

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            ++    +SG+      +F EM   G EPN+HTY  +I+   K  ++ +       M  K
Sbjct: 79  VIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEK 138

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + P    +NALI    + G V+ A ++L  M++  +  +P+  T   L+        V 
Sbjct: 139 GLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHS--NSCNPNERTYNELICGFCRKKNVH 196

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           RA  +   + +  +  +   Y   I+   + G  + A  + + M + GV+PD+   S  I
Sbjct: 197 RAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFI 256

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D     G++E A  +    K +GI    + Y++L+     A     A  L + M +    
Sbjct: 257 DTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCL 316

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P  ST NALI  LC   ++ + + ++  M   GL     TY+IL+VA  ++ D +    +
Sbjct: 317 PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRI 376

Query: 432 LSQAKEDGVIPNLVMFKCII-GMCSR 456
           L Q    G  P++ ++   I   C+R
Sbjct: 377 LDQMVSSGYQPDVYIYTAFIHAFCTR 402



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 186/430 (43%), Gaps = 13/430 (3%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVY----HARFFNVCKSQKAIKEAFR 82
           SY  LI      GR+ E I++ + M         + Y    HA  F   +  +AI     
Sbjct: 41  SYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHA-LFESGRRMEAINLFSE 99

Query: 83  FFKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             +    P + T+  M+ ++C  +K  EG  ++L  + E GL      Y  LI    K G
Sbjct: 100 MRERGCEPNIHTYTVMINAMCKETKLEEGR-RILDEMVEKGLVPSVPTYNALIDGYCKEG 158

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            V+A  E+   M +    PN  TY  LI G  +   V +A      M    + P  V +N
Sbjct: 159 MVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYN 218

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +LI    + G +D A+ +L  MN   + V PD  T    +      G+++ A  ++  + 
Sbjct: 219 SLIHGQCKIGYLDSAYRLLNLMNE--NGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLK 276

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  IK    +YT  I+   + G  + A S+ D M  +  +P+    +ALID      KV+
Sbjct: 277 EKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQ 336

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +++    +G+   + +Y+ L+ A     ++  A  + + M S   +P V    A I
Sbjct: 337 EALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFI 396

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            A C    + +  +++S M   G+ P+ +TY++++ A      +     +L +  + G  
Sbjct: 397 HAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCD 456

Query: 442 PNLVMFKCII 451
           P+   + C+I
Sbjct: 457 PSHHTYSCLI 466



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/464 (22%), Positives = 193/464 (41%), Gaps = 40/464 (8%)

Query: 28  QLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +H+Y    N + ++ ++ E   +L++M  KGL+     Y+A     CK +  ++ A   
Sbjct: 108 NIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCK-EGMVEAAQEI 166

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             L+     NP   T+N L+      K+   A  +L  + E+ L      Y +LI    K
Sbjct: 167 LDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCK 226

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G +D+ + + + M   G+ P+  TY   ID   K G++ +A   +  ++ K +K + V+
Sbjct: 227 IGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVI 286

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           + ALI    ++G +D A  +L  M  E     P+  T  AL+       +V  A  + + 
Sbjct: 287 YTALIDGYCKAGKMDDANSLLDRMLTE--DCLPNSSTYNALIDGLCKERKVQEALLLMES 344

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + +  +K T   YTI I    + GD+++A  + D M   G  PD    +A I      G 
Sbjct: 345 MIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGN 404

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A +++     +G+    ++Y+ ++ A         A ++ + M      P+  T + 
Sbjct: 405 IKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSC 464

Query: 380 LI--------------TALCDGD---------------QLPKTMEVLSDMKSLGLCPNTI 410
           LI               ALCD                 +    +E+   M   G  PN  
Sbjct: 465 LIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHGCSPNIN 524

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           TY+ L++   +   + V   L     E GV P+  ++  ++  C
Sbjct: 525 TYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCC 568



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 159/387 (41%), Gaps = 11/387 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           + L ++GRI E   L   ++ KG+   + +Y A     CK+ K         +++     
Sbjct: 257 DTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCL 316

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P  ST+N L+      +  + A  ++  + + GLK     YT LI    K G  D    +
Sbjct: 317 PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRI 376

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +MV++G +P+V+ Y A I      G + +A     +M  + V PD + +  +I A G 
Sbjct: 377 LDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGG 436

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G ++ AFDVL  M       DP H T   L+K         + + V            P
Sbjct: 437 LGLLNPAFDVLKRMFDT--GCDPSHHTYSCLIKHLLKEELTKKYKNVAL------CDSIP 488

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            V+   +    +   +E A  +++ M + G  P+    + LI      G++  A ++   
Sbjct: 489 NVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDH 548

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G+S     Y+SL+  C     +  A+ L   M      P + ++N L   L +   
Sbjct: 549 MNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGS 608

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
             K   V S++   G   + + + IL+
Sbjct: 609 KEKAKVVFSNLLQCGYNDDEVAWKILI 635



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 140/330 (42%), Gaps = 39/330 (11%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           V++ F VF+ M   G   N  +Y  LI G  + G+V +    +  MR  +  P    +  
Sbjct: 20  VNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTV 79

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           ++ A  +SG    A ++ +EM                            R R     IH 
Sbjct: 80  IVHALFESGRRMEAINLFSEM----------------------------RERGCEPNIH- 110

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                    YT+ IN   +    E    + D+M +KG++P     +ALID     G VEA
Sbjct: 111 --------TYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEA 162

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A EIL    +   +    +Y+ L+      KN  +A+ L   M   +L P+V T N+LI 
Sbjct: 163 AQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIH 222

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
             C    L     +L+ M   G+ P+  TYS+ +    +K  +E   +L +  KE G+  
Sbjct: 223 GQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKA 282

Query: 443 NLVMFKCII-GMC-SRRYEKARTLNEHVLS 470
           N V++  +I G C + + + A +L + +L+
Sbjct: 283 NEVIYTALIDGYCKAGKMDDANSLLDRMLT 312



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 1/175 (0%)

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           D   A SV++ M KKG   +EV  + LI      G+V+    I ++ +       + +Y+
Sbjct: 19  DVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYT 78

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            ++ A   +    +A+ L+  M+    +P + T   +I A+C   +L +   +L +M   
Sbjct: 79  VIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEK 138

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF-KCIIGMCSRR 457
           GL P+  TY+ L+    ++  VE    +L     +   PN   + + I G C ++
Sbjct: 139 GLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKK 193


>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
          Length = 648

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 118/503 (23%), Positives = 226/503 (44%), Gaps = 24/503 (4%)

Query: 81  FRFFKLVPN-PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            R   L P+ PT S  ++L + C      E A  V   +   GL  D   Y TLI   +K
Sbjct: 20  MRLLMLPPSTPTTSLIDVLPAECTGP---ELALAVFGRLLRTGLGPDVCSYNTLIDGFSK 76

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G+VD  +E+F++M+   + P+V TY +LIDG  K  ++ K+      M    ++P+   
Sbjct: 77  EGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKT 136

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +N+LI     +G    +  V  EM++    + P  +   + + A     ++  A++++  
Sbjct: 137 YNSLIYGYSTAGMWKESVRVFKEMSSS--GLIPCVVNCNSFIHALCRHNRIKEAKDIFDS 194

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +     K     Y+  ++  +  G +    S+ + M  KG++P+  F + LI+     G 
Sbjct: 195 MVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGM 254

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A  I ++ +N+G+    +++++++ +         AL  + HM  I + P+ +    
Sbjct: 255 MDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRC 314

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKED 438
           LI   C+  +L K  E++S+M +  + P  + Y S ++    ++  V  G  ++    + 
Sbjct: 315 LIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQT 374

Query: 439 GVIPNLVMFK------CIIGMCSRRYEKA--RTLNEHVLSFNSGRPQIENKWTSLALMVY 490
           G  PN+V F       C++G      E+A    +  H L+ N     +  + T+ A  ++
Sbjct: 375 GQRPNVVTFNSLMEGYCLVG----NMEEALHYLMLWHQLALNRIVTYMARR-TTAAKKMF 429

Query: 491 REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGF 547
            E I +GT  +++    VLG L      D    L+E L    V  D +  + + S +   
Sbjct: 430 HEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKV 489

Query: 548 GEYDPRAFSLLEEAASFGIVPCV 570
           G     A  L    +++G+VP V
Sbjct: 490 GRRQ-EAKELFAAISTYGLVPTV 511



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 107/481 (22%), Positives = 209/481 (43%), Gaps = 44/481 (9%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
             VS  + +YN LI    +   + +   +LE M   G+   +K Y++  +    +    K
Sbjct: 93  QSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGY-STAGMWK 151

Query: 79  EAFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           E+ R FK      L+P   ++  + + ++C  ++  E A  +   +   G K +   Y+T
Sbjct: 152 ESVRVFKEMSSSGLIPC-VVNCNSFIHALCRHNRIKE-AKDIFDSMVLKGPKPNIISYST 209

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+   A  G    M  + + MV+ GI PN   +  LI+  A+ G + KA   +  M++K 
Sbjct: 210 LLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKG 269

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVD 251
           + PD V F  +I++  + G +D   D L + N  V   V P       L++ C N G++ 
Sbjct: 270 MIPDTVTFATVISSLCRIGRLD---DALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELV 326

Query: 252 RARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           +A+E + +M++K       + ++  IN   + G       + D M + G  P+ V  ++L
Sbjct: 327 KAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFNSL 386

Query: 311 IDFAGHAGKVE--------------------------AAFEILQEAKNQGISVGIISYSS 344
           ++     G +E                          AA ++  E    G +V I +Y  
Sbjct: 387 MEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTTAAKKMFHEMIESGTTVSIQTYGV 446

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           ++G         +A  L E + ++ +K  + T N +I+A+    +  +  E+ + + + G
Sbjct: 447 VLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYG 506

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 464
           L P   TY++++    +++  E    L    ++ G  P+  +   I+ M  ++ E A+  
Sbjct: 507 LVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKAS 566

Query: 465 N 465
           N
Sbjct: 567 N 567



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/504 (20%), Positives = 210/504 (41%), Gaps = 44/504 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN LI    ++G + +  +L   M  + +      Y++    +CK+++ +K      ++
Sbjct: 66  SYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQM 125

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V     P   T+N L+   +++   + + +V + +  +GL        + I    +  ++
Sbjct: 126 VDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRI 185

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
               ++F  MV  G +PN+ +Y  L+ G A  G  A       +M SK + P+   FN L
Sbjct: 186 KEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNIL 245

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I A  + G +D+A  +  +M  +   + PD +T   ++ +    G++D A  ++K  H  
Sbjct: 246 INAYARCGMMDKAMLIFEDMQNK--GMIPDTVTFATVISSLCRIGRLDDA--LHKFNHMV 301

Query: 264 NIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKV 320
           +I   P   VY   I  C   G+   A  +  +M  K + P  V + S++I+     G+V
Sbjct: 302 DIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRV 361

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL--------------------- 359
               +I+      G    +++++SLM       N ++AL                     
Sbjct: 362 AEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARR 421

Query: 360 -----ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
                +++  M       ++ T   ++  LC  +   +   +L  + ++ +  + IT++I
Sbjct: 422 TTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNI 481

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSFN 472
           ++ A  +    +    L +     G++P +  +  +I   +    YE+A  L   +    
Sbjct: 482 VISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNL--FISVEK 539

Query: 473 SGRPQIENKWTSLALMVYREAIVA 496
           SGR         +  M+ ++A VA
Sbjct: 540 SGRAPDSRLLNHIVRMLLKKAEVA 563



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 90/438 (20%), Positives = 178/438 (40%), Gaps = 23/438 (5%)

Query: 35  LIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVC-KSQKAIKEAFRFFKLVPN 89
           L R  RI E  D+ + M  KG    ++    + H      C  +  ++        +VPN
Sbjct: 179 LCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPN 238

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
                FN+L++  A     + A  +   +Q  G+  D   + T+I++  + G++D     
Sbjct: 239 HRF--FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 296

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV-VFNALITACG 208
           F+ MV+ G+ P+   Y  LI GC   G++ KA      M +K++ P  V  F+++I    
Sbjct: 297 FNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLF 356

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V    D++  M        P+ +T  +LM+     G ++ A     + H+  +   
Sbjct: 357 KEGRVAEGKDIMDLMVQTGQ--RPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALN-- 412

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
                I      +T     A  ++ +M + G          ++         + A  +L+
Sbjct: 413 ----RIVTYMARRTTA---AKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLE 465

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +     +   II+++ ++ A       Q+A EL+  + +  L PTV T N +I+ L   +
Sbjct: 466 KLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEE 525

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              +   +   ++  G  P++   + ++    +K +V      LS   E+    NL +  
Sbjct: 526 SYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEVAKASNYLSIIDEN----NLTLEA 581

Query: 449 CIIGMCSRRYEKARTLNE 466
             I + +  + +  T  E
Sbjct: 582 STISLLASLFSREDTQRE 599


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 166/348 (47%), Gaps = 2/348 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++  L++    + +++   ++LR ++   +K D  +Y T+I +  K+  +    +V+ EM
Sbjct: 164 SYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEM 223

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +  GI P+V TY  LI G    G + +AF     M+ KN+ P+   FN LI A  + G +
Sbjct: 224 IVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKM 283

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A  +LA M      + PD  T  +L+       +V  A+ V+  + +  +    + YT
Sbjct: 284 KEAKILLAVMMKAC--IKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYT 341

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             IN   +T   + A S++++M  K +IPD V  ++LID       +E A  + +  K Q
Sbjct: 342 NMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQ 401

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI   + SY+ L+     +   + A E+++ + +      V     LI  LC      + 
Sbjct: 402 GIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEA 461

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
           +++ S M+  G  P+ +T+ I++ A   KD+ +    +L +    G++
Sbjct: 462 LDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGLL 509



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 187/423 (44%), Gaps = 11/423 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L+        I L +  E  G+   D    +   N    Q  I  AF  F    K   +P
Sbjct: 67  LVNNKHYPTVISLFKQFEPNGITP-DLCTLSILINCFCHQAHITLAFSVFANILKRGFHP 125

Query: 91  TLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
              T N L+  +C   +  +  +   +LV + G + D   Y TLI    K+G+  A+  +
Sbjct: 126 NAITLNTLIKGLCFRGEIKKALYFHDQLVAQ-GFQLDQVSYGTLINGLCKTGETKAVARL 184

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             ++    ++P+V  Y  +I+   K   +  A   Y  M  K + PD V +  LI     
Sbjct: 185 LRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCI 244

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +  AF +L EM  ++  ++P+  T   L+ A +  G++  A+ +  ++ K  IK   
Sbjct: 245 MGHLKEAFSLLNEM--KLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDV 302

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I+      + + A  V+  M ++GV PD    + +I+       V+ A  + +E
Sbjct: 303 FTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEE 362

Query: 330 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            K++ +   I++Y+SL+ G C N  + ++A+ L + MK   ++P V +   L+  LC   
Sbjct: 363 MKHKNMIPDIVTYNSLIDGLCKN-HHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSG 421

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L    E+   + + G   N   Y++L+    +    +  L L S+ ++ G +P+ V F 
Sbjct: 422 RLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFD 481

Query: 449 CII 451
            II
Sbjct: 482 III 484



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 171/389 (43%), Gaps = 12/389 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P    FN ++S   ++K       + +  +  G+  D    + LI        +   F
Sbjct: 53  PPPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAF 112

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            VF  ++  G  PN  T   LI G    G++ KA   +  + ++  + D+V +  LI   
Sbjct: 113 SVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGL 172

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIK 266
            ++G       +L ++  E H V PD +    ++ +      +  A +VY +MI    +K
Sbjct: 173 CKTGETKAVARLLRKL--EGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMI----VK 226

Query: 267 G-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G +P+V  YT  I+     G  + A S+ ++M  K + P+    + LID     GK++ A
Sbjct: 227 GISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEA 286

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             +L       I   + +Y+SL+         + A  ++  M    + P V     +I  
Sbjct: 287 KILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMING 346

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC    + + M +  +MK   + P+ +TY+ L+    +   +E  + L  + KE G+ P+
Sbjct: 347 LCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPD 406

Query: 444 LVMFKCII-GMC-SRRYEKARTLNEHVLS 470
           +  +  ++ G+C S R E A+ + + +L+
Sbjct: 407 VYSYTILLDGLCKSGRLEDAKEIFQRLLA 435



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 5/180 (2%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSK 106
           M ++G+    + Y      +CK+ K + EA   F+ + +    P + T+N L+     + 
Sbjct: 328 MAQRGVTPDVQCYTNMINGLCKT-KMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNH 386

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166
             E A  + + ++E G++ D   YT L+    KSG+++   E+F  ++  G   NVH Y 
Sbjct: 387 HLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYT 446

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            LI+   KAG   +A      M  K   PD V F+ +I A  +    D+A  +L EM A 
Sbjct: 447 VLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIAR 506


>gi|224068636|ref|XP_002326162.1| predicted protein [Populus trichocarpa]
 gi|222833355|gb|EEE71832.1| predicted protein [Populus trichocarpa]
          Length = 828

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 180/442 (40%), Gaps = 80/442 (18%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKV---------------YHARFFNVC------KSQKA 76
           +GRI  C +++ +  RKG LD   V                H    +VC         + 
Sbjct: 220 EGRILFC-NIISEFGRKGHLDSALVAYDEAKHKLSVPNMYLHRTIIDVCGLCGDYMKSRY 278

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           I E     K++PN  +  FN LM+V  ++ D    F V + +Q  G+ AD   Y  L+  
Sbjct: 279 IYEDLINRKVIPN--VYVFNSLMNV--NAHDLGYTFSVFKNMQNLGVTADVASYNILLKA 334

Query: 137 CAKSGKVDAMFEVFHE---------------------------------------MVNAG 157
           C  +G+VD   +++ E                                       M+++G
Sbjct: 335 CCIAGRVDLAKDIYREVKQLESAEVLKLDVFTYCMIVKIFADAKMWQMALKIKEDMLSSG 394

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + PN+H + +LI  CA AG V +A   +  M     KP+    N L+ AC Q+   DRAF
Sbjct: 395 VTPNMHIWSSLISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHACVQACQYDRAF 454

Query: 218 DVLA--------EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            +          E+    H  + D I      K C N   +         I K+    TP
Sbjct: 455 RLFQCWKGSEAQEVFHGDHSGNADEIEHA--QKHCPNMTTIVPNSHHLNFIKKFPFTPTP 512

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y + +  C    D+  A ++ D+M   G+ P+ +  S LID  G +G V  A +IL+ 
Sbjct: 513 ATYHMLMKACG--SDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQILKN 570

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            +  G+   +++Y++ +  C   KN + A  L+  MK  ++ P + T N L+ A      
Sbjct: 571 MRMAGVEPDVVAYTTAIKVCVETKNLKLAFSLFAEMKRCQINPNLVTYNTLLRARTRYGS 630

Query: 390 LPKTMEVLS---DMKSLGLCPN 408
           L +  + L+   DM+  G   N
Sbjct: 631 LREVQQCLAIYQDMRKAGYKSN 652



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 157/373 (42%), Gaps = 53/373 (14%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           L+  +I+   + G +D+    + E  +    PN++ +  +ID C   G   K+   Y  +
Sbjct: 224 LFCNIISEFGRKGHLDSALVAYDEAKHKLSVPNMYLHRTIIDVCGLCGDYMKSRYIYEDL 283

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
            ++ V P+  VFN+L+       A D  +      N +   V  D  +   L+KAC  AG
Sbjct: 284 INRKVIPNVYVFNSLMNV----NAHDLGYTFSVFKNMQNLGVTADVASYNILLKACCIAG 339

Query: 249 QVDRAREVYKMIHKYN----IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
           +VD A+++Y+ + +      +K     Y + +   +    W+ A  + +DM   GV P+ 
Sbjct: 340 RVDLAKDIYREVKQLESAEVLKLDVFTYCMIVKIFADAKMWQMALKIKEDMLSSGVTPNM 399

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE- 363
              S+LI    +AG VE A ++ +E    G        + L+ AC  A  + +A  L++ 
Sbjct: 400 HIWSSLISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHACVQACQYDRAFRLFQC 459

Query: 364 ---------------------------------------HMKSIK---LKPTVSTMNALI 381
                                                  H+  IK     PT +T + L+
Sbjct: 460 WKGSEAQEVFHGDHSGNADEIEHAQKHCPNMTTIVPNSHHLNFIKKFPFTPTPATYHMLM 519

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            A   G    +   ++ +MK++G+ PN I++SIL+  C    +V   + +L   +  GV 
Sbjct: 520 KAC--GSDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQILKNMRMAGVE 577

Query: 442 PNLVMFKCIIGMC 454
           P++V +   I +C
Sbjct: 578 PDVVAYTTAIKVC 590



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 8/227 (3%)

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           R++F  +I+  G+ G +D A     E   ++    P+      ++  C   G   ++R +
Sbjct: 222 RILFCNIISEFGRKGHLDSALVAYDEAKHKLSV--PNMYLHRTIIDVCGLCGDYMKSRYI 279

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           Y+ +   N K  P VY           D  +  SV+ +M   GV  D    + L+     
Sbjct: 280 YEDL--INRKVIPNVYVFNSLMNVNAHDLGYTFSVFKNMQNLGVTADVASYNILLKACCI 337

Query: 317 AGKVEAAFEILQEAKN----QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
           AG+V+ A +I +E K     + + + + +Y  ++   ++AK WQ AL++ E M S  + P
Sbjct: 338 AGRVDLAKDIYREVKQLESAEVLKLDVFTYCMIVKIFADAKMWQMALKIKEDMLSSGVTP 397

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            +   ++LI+A  +   + + +++  +M   G  PN+   +ILL AC
Sbjct: 398 NMHIWSSLISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHAC 444



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 135/345 (39%), Gaps = 61/345 (17%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERK-GLLDMDKVYHARFFNVCK----------S 73
           V+  + SYN L++   I+  +DL +D+ R+   L+  +V     F  C            
Sbjct: 321 VTADVASYNILLKACCIAGRVDLAKDIYREVKQLESAEVLKLDVFTYCMIVKIFADAKMW 380

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           Q A+K           P +  ++ L+S CA++   E A Q+   +  +G K + +    L
Sbjct: 381 QMALKIKEDMLSSGVTPNMHIWSSLISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNIL 440

Query: 134 ITTCAKSGKVDAMF------------EVFH--------EMVNA--------GIEPNVH-- 163
           +  C ++ + D  F            EVFH        E+ +A         I PN H  
Sbjct: 441 LHACVQACQYDRAFRLFQCWKGSEAQEVFHGDHSGNADEIEHAQKHCPNMTTIVPNSHHL 500

Query: 164 -------------TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
                        TY  L+  C      AKA      M++  + P+ + ++ LI  CG S
Sbjct: 501 NFIKKFPFTPTPATYHMLMKACGSDYHRAKAL--MDEMKTVGISPNHISWSILIDICGVS 558

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G V  A  +L  M   +  V+PD +     +K C     +  A  ++  + +  I     
Sbjct: 559 GNVSGAVQILKNM--RMAGVEPDVVAYTTAIKVCVETKNLKLAFSLFAEMKRCQINPNLV 616

Query: 271 VYTIAINCCSQTG---DWEFACSVYDDMTKKGVIPDEVFLSALID 312
            Y   +   ++ G   + +   ++Y DM K G   ++ +L  LI+
Sbjct: 617 TYNTLLRARTRYGSLREVQQCLAIYQDMRKAGYKSNDYYLKQLIE 661


>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
 gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
          Length = 1090

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/466 (23%), Positives = 190/466 (40%), Gaps = 40/466 (8%)

Query: 37   RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
            + G + E +D+ E M +   L     Y       C+  K +        ++     P   
Sbjct: 586  KYGTLDEALDICEKMVKNNCLPDIHTYTILLSGFCRKGKILPALVMLQMMLEKGVVPDTV 645

Query: 94   TFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
             +  L++   +    + A  V + ++ + GL ADC  Y +L+    K G V+ +  +  +
Sbjct: 646  AYTCLLNGLINEGQVKAASYVFQEIICKEGLYADCIAYNSLMNGYLKGGNVNTIKRMMSD 705

Query: 153  MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            M    + PN  +Y  L+ G  K GQ +K+   Y  M  K ++PD V +  LI    + G 
Sbjct: 706  MYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGL 765

Query: 213  VDRAFDVLAEMNAE-VHP--------------------------------VDPDHITIGA 239
            +D A   L +M  E + P                                + P   T  A
Sbjct: 766  IDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHNALRLFNCMKCLHLSPSSKTFSA 825

Query: 240  LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
            ++        +D++ EV   + +  ++     Y   +N   + G+ + A  + ++M   G
Sbjct: 826  MINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIG 885

Query: 300  VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
            ++P EV  S++I      GK+E A  +       G+   + ++++LM +         AL
Sbjct: 886  IVPAEVAESSIIRGLCRCGKLEEAVIVFSNMMRSGMVPTVATFTTLMHSLCKESKIADAL 945

Query: 360  ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
             L   M+  +LK  V + N LIT LC    +   +++  +MKS GL PN  TY  L  A 
Sbjct: 946  HLKRLMELCRLKVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNVTTYITLTGAM 1005

Query: 420  ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
                 ++ G  LL   +E G+IP    FK +  +  R  +  R LN
Sbjct: 1006 YSTGRMQNGEELLEDIEERGLIP---AFKQLENLERRMEDAIRRLN 1048



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 205/473 (43%), Gaps = 18/473 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTL 92
           R+G I+E     + M R  +      ++    + C   K I EAF  +    +   +P +
Sbjct: 481 REGMITEAEHFRQYMSRMNISFNSVSFNCIIDSYCHRGK-IVEAFSVYDDMVRYGHSPNV 539

Query: 93  STF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
            T+ N+L  +C      + A Q +  + +     D K +  L+    K G +D   ++  
Sbjct: 540 CTYQNLLRGLCQGGHLVQ-AKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALDICE 598

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +MV     P++HTY  L+ G  + G++  A     +M  K V PD V +  L+      G
Sbjct: 599 KMVKNNCLPDIHTYTILLSGFCRKGKILPALVMLQMMLEKGVVPDTVAYTCLLNGLINEG 658

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V  A  V  E+  +   +  D I   +LM      G V+  + +   +++  +      
Sbjct: 659 QVKAASYVFQEIICK-EGLYADCIAYNSLMNGYLKGGNVNTIKRMMSDMYQNEVYPNSAS 717

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y I ++   + G +  +  +Y  M +KG+ PD V    LI      G ++ A + L++  
Sbjct: 718 YNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMV 777

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +GI    + +  L+ + S       AL L+  MK + L P+  T +A+I  L   + L 
Sbjct: 778 LEGIFPDKLVFDILITSFSEKSKMHNALRLFNCMKCLHLSPSSKTFSAMINGLIRKNYLD 837

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           ++ EVL +M  +GL PN   Y  L+ A  R  +++    L  + K  G++P  V    II
Sbjct: 838 QSHEVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSII 897

Query: 452 -GMCSRRYEKARTLNEHVLSFN----SGRPQIENKWTSLALMVYREAIVAGTI 499
            G+C     +   L E V+ F+    SG       +T+L   + +E+ +A  +
Sbjct: 898 RGLC-----RCGKLEEAVIVFSNMMRSGMVPTVATFTTLMHSLCKESKIADAL 945



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 192/462 (41%), Gaps = 45/462 (9%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH Y   +++GR    + +LEDMER  +      Y+     +C+ +++ + AF   K + 
Sbjct: 196 LHWY---VKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSAR-AFLLLKRMR 251

Query: 89  NPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              L+    T+N L++          A  V   +    L      YTT+I    ++ ++D
Sbjct: 252 KDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRID 311

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               V  EM   G+ P+  TY AL++G  K   +  A      ++S+ +  ++ +   LI
Sbjct: 312 KALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILI 371

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               Q G + +A  +L  M  +   +DPD +T  AL+       ++   +E+   + K  
Sbjct: 372 DGFCQVGEISKAKQILKSMLED--GIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSG 429

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           I     +YT  I    + G  + A   + D+ ++G++ + V  +AL+      G +  A 
Sbjct: 430 ILPNDVLYTTLICYYCKAGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMITEAE 489

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
              Q      IS   +S++ ++ +  +     +A  +Y+ M      P V T   L+  L
Sbjct: 490 HFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGL 549

Query: 385 CDGDQLPKT---MEVLSDMKS-----------LGLC---------------------PNT 409
           C G  L +    M  L D+ S           LG+C                     P+ 
Sbjct: 550 CQGGHLVQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCLPDI 609

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            TY+ILL    RK  +   L++L    E GV+P+ V + C++
Sbjct: 610 HTYTILLSGFCRKGKILPALVMLQMMLEKGVVPDTVAYTCLL 651



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 141/319 (44%), Gaps = 8/319 (2%)

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           N  TY  ++    K G+   A      M   +++ D   +N +I    +     RAF +L
Sbjct: 188 NSATYNTILHWYVKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSARAFLLL 247

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
             M  +   + PD  T   L+      G+++ AR V+  + +  +  +   YT  I+   
Sbjct: 248 KRMRKD--DLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYC 305

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           +    + A SV  +M   GV+P E+  SAL++       +  A +++ + K++GI++   
Sbjct: 306 RNRRIDKALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKT 365

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
             + L+          KA ++ + M    + P V T +ALI  +C   ++ +T E+LS M
Sbjct: 366 MCTILIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRM 425

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII------GMC 454
           +  G+ PN + Y+ L+    +   V+V L         G++ N V+   ++      GM 
Sbjct: 426 QKSGILPNDVLYTTLICYYCKAGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMI 485

Query: 455 SRRYEKARTLNEHVLSFNS 473
           +      + ++   +SFNS
Sbjct: 486 TEAEHFRQYMSRMNISFNS 504



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/359 (19%), Positives = 140/359 (38%), Gaps = 37/359 (10%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +T+N ++         + A  VL  ++   ++AD   Y  +I    +  +    F +   
Sbjct: 190 ATYNTILHWYVKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSARAFLLLKR 249

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M    + P+  TY  LI+G    G++  A   +  M  + + P    +  +I    ++  
Sbjct: 250 MRKDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRR 309

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKA----------------------------C 244
           +D+A  VL+EM  E+  V P  +T  AL+                              C
Sbjct: 310 IDKALSVLSEM--EITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMC 367

Query: 245 A-------NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
                     G++ +A+++ K + +  I      Y+  IN   +         +   M K
Sbjct: 368 TILIDGFCQVGEISKAKQILKSMLEDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQK 427

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G++P++V  + LI +   AG V+ A +   +   +G+    + +++L+ A        +
Sbjct: 428 SGILPNDVLYTTLICYYCKAGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMITE 487

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           A    ++M  + +     + N +I + C   ++ +   V  DM   G  PN  TY  LL
Sbjct: 488 AEHFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLL 546


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 186/431 (43%), Gaps = 15/431 (3%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  + +YN L+R      ++ E    L  M  +G +  D  Y+      CKS   ++EA
Sbjct: 276 VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKS-GMLQEA 334

Query: 81  FRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
               K       VP+  ++  +++  +CA   D E A ++    Q   LK D  +Y +L+
Sbjct: 335 TELLKDAVFKGFVPD-RVTYCSLINGLCAEG-DIERALELFNEAQAKDLKPDLVVYNSLV 392

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               + G +    +V +EMV  G  P++ TY  +I+G  K G ++ A         K   
Sbjct: 393 KGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYL 452

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD   FN LI    +   +D A  ++  M    + + PD IT  +++     AG+     
Sbjct: 453 PDVFTFNTLIDGYCKRLKLDSALQLVERM--WTYGIAPDVITYNSVLNGLCKAGKAKEVN 510

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E ++ +     +     Y I I    +    E A  V   M + G++PD V  + LI   
Sbjct: 511 ETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGF 570

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G ++ A+ + Q+   +G S    +++ L+GA S+  N Q A +++  M S   KP +
Sbjct: 571 CRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDL 630

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T   L+  LC    + +    L++M S G  P+  T+  +L        V   + ++  
Sbjct: 631 YTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIHI 690

Query: 435 AKEDGVIPNLV 445
               GV+P +V
Sbjct: 691 MVRMGVVPEVV 701



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 154/347 (44%), Gaps = 4/347 (1%)

Query: 113 QVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           + + LV+  G  +  D   Y TL+    K  KV    +    M+N G  P+  TY  +ID
Sbjct: 264 EAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIID 323

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G  K+G + +A         K   PDRV + +LI      G ++RA ++  E  A+   +
Sbjct: 324 GYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNE--AQAKDL 381

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD +   +L+K     G +  A +V   + +         Y I IN   + G+   A  
Sbjct: 382 KPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAV 441

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V +D   KG +PD    + LID      K+++A ++++     GI+  +I+Y+S++    
Sbjct: 442 VMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLC 501

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A   ++  E +E M     +P   T N LI   C  +QL +   V+  M   GL P+ +
Sbjct: 502 KAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAV 561

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           +++ L+    R  D++   +L  +  E G       F  +IG  S +
Sbjct: 562 SFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSK 608



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 169/367 (46%), Gaps = 6/367 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P ++TFN ++       D   +  +L  V + G+ A+       I    + G+++    +
Sbjct: 209 PDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVAL 268

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M  A + P+V TY  L+ G  K  +V +A    G M ++   PD   +N +I    +
Sbjct: 269 VERM-GAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCK 327

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           SG +  A ++L +  A      PD +T  +L+      G ++RA E++      ++K   
Sbjct: 328 SGMLQEATELLKD--AVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDL 385

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   +    + G    A  V ++M ++G  PD    + +I+     G +  A  ++ +
Sbjct: 386 VVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMND 445

Query: 330 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           A  +G    + ++++L+ G C   K    AL+L E M +  + P V T N+++  LC   
Sbjct: 446 AIVKGYLPDVFTFNTLIDGYCKRLK-LDSALQLVERMWTYGIAPDVITYNSVLNGLCKAG 504

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  +  E   +M   G  PN ITY+IL+    + + +E    ++ +  +DG++P+ V F 
Sbjct: 505 KAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFN 564

Query: 449 CII-GMC 454
            +I G C
Sbjct: 565 TLIHGFC 571



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 174/411 (42%), Gaps = 17/411 (4%)

Query: 75  KAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +A  +AF    L    P    +N +M    ++   + A +V   +  AG+  D + +T  
Sbjct: 88  RAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVR 147

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           + +   +G+      +   +   G +     Y  ++ G    G    A   +  M  ++V
Sbjct: 148 LKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDV 207

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            PD   FN ++ A  Q G V  +  +LA++      +  +  T    ++     G+++ A
Sbjct: 208 FPDVATFNNVLHALCQKGDVMESGALLAKVLKR--GMSANKFTCNIWIRGLCEDGRLEEA 265

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             + + +  Y         T+    C  +   E A      M  +G IPD+   + +ID 
Sbjct: 266 VALVERMGAYVAPDVVTYNTLMRGLCKDSKVQE-AAQYLGRMMNQGCIPDDFTYNTIIDG 324

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              +G ++ A E+L++A  +G     ++Y SL+       + ++ALEL+   ++  LKP 
Sbjct: 325 YCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPD 384

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           +   N+L+  LC    +   ++V+++M   G  P+  TY+I++    +  ++    ++++
Sbjct: 385 LVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMN 444

Query: 434 QAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 483
            A   G +P++  F  +I G C R            L  +S    +E  WT
Sbjct: 445 DAIVKGYLPDVFTFNTLIDGYCKR------------LKLDSALQLVERMWT 483


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 182/411 (44%), Gaps = 13/411 (3%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPN 89
           I Q   +ECI  LE+M  +G       +      +C + +  + A RF +      + PN
Sbjct: 399 IGQMEQAECI--LEEMLSRGFSINPGAFTTIIHWLCMNSR-FESALRFLREMLLRNMRPN 455

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
             L T  ++  +C   K S+      RL+ E G  A+      LI    K+G +     +
Sbjct: 456 DGLLT-TLVGGLCKEGKHSDAVELWFRLL-EKGFGANLVTTNALIHGLCKTGNMQEAVRL 513

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M+  G   +  TY  LI GC K G+V + F   G M  + ++PD   +N LI    +
Sbjct: 514 LKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCR 573

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D A ++  E  +    + P+  T G ++     A +++   +++  +   N++   
Sbjct: 574 IGKLDEAVNLWNECKS--RDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNS 631

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   I    + G+   A  ++DDM  KG+ P     S+LI    + G++E A  ++ E
Sbjct: 632 VVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDE 691

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            + +G+   ++ Y++L+G         K + + + M S  + P   T   +I        
Sbjct: 692 MRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGD 751

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +    ++L +M   G+ P+T+TY++L     ++  +E G  +     ++G+
Sbjct: 752 MKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGL 802



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 193/437 (44%), Gaps = 22/437 (5%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAF 81
           YN LI    + G + + + +  DM  KG+       ++     CK      ++  ++E  
Sbjct: 354 YNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEML 413

Query: 82  -RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            R F + P    +  + L   C +S+  E A + LR +    ++ +  L TTL+    K 
Sbjct: 414 SRGFSINPGAFTTIIHWL---CMNSR-FESALRFLREMLLRNMRPNDGLLTTLVGGLCKE 469

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK     E++  ++  G   N+ T  ALI G  K G + +A      M  +    D++ +
Sbjct: 470 GKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITY 529

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N LI+ C + G V+  F +  EM  +   ++PD  T   L+      G++D A  ++   
Sbjct: 530 NTLISGCCKEGKVEEGFKLRGEMVKQ--GIEPDTFTYNLLIHGMCRIGKLDEAVNLWNEC 587

Query: 261 HKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
              ++   P VYT  + I+   +    E    ++ ++  + +  + V  + LI      G
Sbjct: 588 KSRDL--VPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNG 645

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
               AF++  + +++GI     +YSSL+    N    + A  L + M+   L P V    
Sbjct: 646 NTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYT 705

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           ALI   C   Q+ K + VL +M S  + PN ITY++++    +  D++    LL +    
Sbjct: 706 ALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGK 765

Query: 439 GVIPNLVMFKCII-GMC 454
           G++P+ V +  +  G C
Sbjct: 766 GIVPDTVTYNVLTNGFC 782



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 173/385 (44%), Gaps = 5/385 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L    R    +  L +M  + +   D +       +CK  K   A++  FR  +      
Sbjct: 431 LCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGAN 490

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L T N L+     + + + A ++L+ + E G   D   Y TLI+ C K GKV+  F++  
Sbjct: 491 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 550

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EMV  GIEP+  TY  LI G  + G++ +A   +   +S+++ P+   +  +I    ++ 
Sbjct: 551 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 610

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++    +  E+  +   ++ + +    L++A    G    A +++  +    I  T   
Sbjct: 611 KIEEGEKLFTELLTQ--NLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTAT 668

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y+  I+     G  E A  + D+M K+G++P+ V  +ALI      G+++    +LQE  
Sbjct: 669 YSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMS 728

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +  I    I+Y+ ++   S + + + A +L   M    + P   T N L    C   ++ 
Sbjct: 729 SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIE 788

Query: 392 KTMEVLSDMKSLGLCPNTITYSILL 416
           +  ++   M   GL  + ITY+ L+
Sbjct: 789 EGFKICDYMSQEGLPLDEITYTTLV 813



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 190/438 (43%), Gaps = 9/438 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N   + G++ + I L  DME+ G+      Y+     +CK    + EAFRF  K+V    
Sbjct: 254 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCK-HGNLDEAFRFKEKMVKDGV 312

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N TL T+++L++     +    A  VL+   E G   +  +Y TLI    K G +     
Sbjct: 313 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 372

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +MV+ GI PN  T  ++I G  K GQ+ +A      M S+    +   F  +I    
Sbjct: 373 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLC 432

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +   + A   L EM   +  + P+   +  L+      G+   A E++  + +      
Sbjct: 433 MNSRFESALRFLREM--LLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGAN 490

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
                  I+   +TG+ + A  +   M ++G + D++  + LI      GKVE  F++  
Sbjct: 491 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 550

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   QGI     +Y+ L+          +A+ L+   KS  L P V T   +I   C  D
Sbjct: 551 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 610

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ +  ++ +++ +  L  N++ Y+ L+ A  R  +      L    +  G+ P    + 
Sbjct: 611 KIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYS 670

Query: 449 CII-GMCS-RRYEKARTL 464
            +I GMC+  R E A+ L
Sbjct: 671 SLIHGMCNIGRMEDAKCL 688



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/452 (22%), Positives = 196/452 (43%), Gaps = 49/452 (10%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           VY  +F NV       + A   F+ + N    PT+ T   L+S    + + E ++ V   
Sbjct: 183 VYCTQFRNV-----GFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFET 237

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +++ G+  D  L++T I    K GKV+   ++F +M   G+ PNV TY  LI G  K G 
Sbjct: 238 MRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGN 296

Query: 178 VAKAFG--------------------AYGIMR---------------SKNVKPDRVVFNA 202
           + +AF                       G+M+                K   P+ VV+N 
Sbjct: 297 LDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNT 356

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    + G +  A  +  +M ++   ++P+ +T+ ++++     GQ+++A  + + +  
Sbjct: 357 LIDGYCKMGNLGDALRIRGDMVSK--GINPNSVTLNSIIQGFCKIGQMEQAECILEEMLS 414

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                 P  +T  I+       +E A     +M  + + P++  L+ L+      GK   
Sbjct: 415 RGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSD 474

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A E+      +G    +++ ++L+       N Q+A+ L + M          T N LI+
Sbjct: 475 AVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLIS 534

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
             C   ++ +  ++  +M   G+ P+T TY++L+    R   ++  + L ++ K   ++P
Sbjct: 535 GCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVP 594

Query: 443 NLVMFKCII-GMC-SRRYEKARTLNEHVLSFN 472
           N+  +  +I G C + + E+   L   +L+ N
Sbjct: 595 NVYTYGVMIDGYCKADKIEEGEKLFTELLTQN 626



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/423 (21%), Positives = 186/423 (43%), Gaps = 7/423 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N L++  + +E   +L++   KG    + VY+      CK    + +A R    +V    
Sbjct: 324 NGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCK-MGNLGDALRIRGDMVSKGI 382

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP   T N ++         E A  +L  +   G   +   +TT+I     + + ++   
Sbjct: 383 NPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALR 442

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              EM+   + PN      L+ G  K G+ + A   +  +  K    + V  NALI    
Sbjct: 443 FLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLC 502

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G +  A  +L +M      +D   IT   L+  C   G+V+   ++   + K  I+  
Sbjct: 503 KTGNMQEAVRLLKKMLERGFVLD--KITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPD 560

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y + I+   + G  + A +++++   + ++P+      +ID    A K+E   ++  
Sbjct: 561 TFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFT 620

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   Q + +  + Y++L+ A     N  +A +L++ M+S  + PT +T ++LI  +C+  
Sbjct: 621 ELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIG 680

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++     ++ +M+  GL PN + Y+ L+    +   ++  + +L +     + PN + + 
Sbjct: 681 RMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYT 740

Query: 449 CII 451
            +I
Sbjct: 741 VMI 743



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 11/219 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           + D+   +++Y  +I    +  +I E   L  ++  + L     VY+      C++   +
Sbjct: 589 SRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTV 648

Query: 78  KEAFRFF-----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            EAF+       K +P PT +T++ L+    +    E A  ++  +++ GL  +   YT 
Sbjct: 649 -EAFKLHDDMRSKGIP-PTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTA 706

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           LI    K G++D +  V  EM +  I PN  TY  +IDG +K+G +  A      M  K 
Sbjct: 707 LIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKG 766

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
           + PD V +N L     + G ++  F +   M+ E  P+D
Sbjct: 767 IVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLD 805



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 11/191 (5%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQKAIKEAFR 82
           YN LIR     G   E   L +DM  KG+      Y +    +C     +  K + +  R
Sbjct: 634 YNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMR 693

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
              L+PN  +  +  L+         +    VL+ +    +  +   YT +I   +KSG 
Sbjct: 694 KEGLLPN--VVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGD 751

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +    ++ HEMV  GI P+  TY  L +G  K G++ + F     M  + +  D + +  
Sbjct: 752 MKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTT 811

Query: 203 LITACGQSGAV 213
           L+    Q  A+
Sbjct: 812 LVHGWQQPSAL 822


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 212/471 (45%), Gaps = 18/471 (3%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            ++ YN LI    + G IS    L+ +M  K L      Y +     C S+  I +A R 
Sbjct: 436 SVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYC-SKGKINKALRL 494

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           +  +      P++ TF  L+S    +     A ++   + E  +K +   Y  +I    +
Sbjct: 495 YHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCE 554

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G +   FE  +EM+  GI P+ ++Y  LI G    GQ ++A      +   N + + + 
Sbjct: 555 EGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEIC 614

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +  L+    + G ++ A  V  +M   +  VD D +  G L+              + K 
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQDMG--LRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKE 672

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +H   +K    +YT  I+  S+TGD++ A  ++D M  +G +P+EV  +A+I+    AG 
Sbjct: 673 MHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGF 732

Query: 320 VEAAFEILQEAKNQGISV-GIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTM 377
           V  A EIL      G SV   ++Y   +   +    + +KA+EL+  +    L  T +T 
Sbjct: 733 VNEA-EILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANT-ATY 790

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N LI   C   ++ +  E+++ M   G+ P+ ITY+ ++    R++DV+  + L +   E
Sbjct: 791 NMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTE 850

Query: 438 DGVIPNLVMFKCIIGMCSRRYE--KARTLNEHVLSFNSGRPQIENKWTSLA 486
            G+ P+ V +  +I  C    E  KA  L   +L     +P  E   T+++
Sbjct: 851 KGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLR-QGLKPNTETSETTIS 900



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 168/368 (45%), Gaps = 7/368 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T + L+      +    A ++   +   G++ D  +YT +I +  +   +    E+
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M   G + N+  Y  LIDG  K  +V +A G    +  K +KPD V +  L+  CG 
Sbjct: 250 IVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLV--CGL 307

Query: 210 SGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
                + F+V  EM  E+  +   P    + +L++     G+V+ A  + K + ++ +  
Sbjct: 308 CKV--QEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSP 365

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
              VY   I+   +  +++ A  ++D M K G+ P++V  S LID     GK++ A   L
Sbjct: 366 NIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFL 425

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E  + G+   +  Y+SL+       +   A  L   M + KL+PTV T  +L+   C  
Sbjct: 426 GEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSK 485

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++ K + +  +M   G+ P+  T++ LL    R   +   + L ++  E  V PN V +
Sbjct: 486 GKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTY 545

Query: 448 KCII-GMC 454
             +I G C
Sbjct: 546 NVMIEGYC 553



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 185/427 (43%), Gaps = 9/427 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-----LVPN 89
           L ++G++ E ++L++ +   G+     VY+A   ++CK +   +    F +     L PN
Sbjct: 342 LRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPN 401

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
               T+++L+ +       + A   L  + + GLK     Y +LI    K G + A   +
Sbjct: 402 DV--TYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESL 459

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM+N  +EP V TY +L+ G    G++ KA   Y  M  K + P    F  L++   +
Sbjct: 460 MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFR 519

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +  A  +  EM AE + V P+ +T   +++     G + +A E    + +  I    
Sbjct: 520 AGLIRDAVKLFTEM-AEWN-VKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDT 577

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I+    TG    A    D + K     +E+  + L+      GK+E A  + Q+
Sbjct: 578 YSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQD 637

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G+ + ++ Y  L+      K+ +  L L + M    LKP      ++I A      
Sbjct: 638 MGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGD 697

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             +   +   M + G  PN +TY+ ++    +   V    +L S+ +    +PN V + C
Sbjct: 698 FKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGC 757

Query: 450 IIGMCSR 456
            + + ++
Sbjct: 758 FLDILTK 764



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/226 (19%), Positives = 98/226 (43%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P+  T+ AL+           A E++  +    I+    +YT  I    +  D   A  +
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
              M   G   + V  + LID      KV  A  I ++   + +   +++Y +L+     
Sbjct: 250 IVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCK 309

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
            + ++  LE+ + M  ++  P+ + +++L+  L    ++ + + ++  +   G+ PN   
Sbjct: 310 VQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFV 369

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           Y+ L+ +  +  + +   +L  +  + G+ PN V +  +I M  RR
Sbjct: 370 YNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRR 415


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/438 (23%), Positives = 202/438 (46%), Gaps = 10/438 (2%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKE 79
           D+ E+L S  RL R  ++++ IDL  DM +      ++D +++  A    + K    I  
Sbjct: 51  DLRERL-SKTRL-RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSA-IVKLKKYDVVISL 107

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             +   L     L TFN++++          A  +L  + + G + D     +L+    +
Sbjct: 108 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 167

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
             +V     +  +MV  G +P++  Y A+ID   K  +V  AF  +  +  K ++P+ V 
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT 227

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           + AL+     S     A  +L++M  +   + P+ IT  AL+ A    G+V  A+E+++ 
Sbjct: 228 YTALVNGLCNSSRWSDAARLLSDMIKK--KITPNVITYSALLDAFVKNGKVLEAKELFEE 285

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + + +I      Y+  IN        + A  ++D M  KG + D V  + LI+    A +
Sbjct: 286 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKR 345

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           VE   ++ +E   +G+    ++Y++L+     A +  KA E +  M    + P + T N 
Sbjct: 346 VEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNI 405

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           L+  LCD  +L K + +  DM+   +  + +TY+ ++    +   VE    L       G
Sbjct: 406 LLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 465

Query: 440 VIPNLVMFKCII-GMCSR 456
           + P++V +  ++ G+C++
Sbjct: 466 LKPDIVTYTTMMSGLCTK 483



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 198/434 (45%), Gaps = 12/434 (2%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           P+P+    N       +L  Y+ +I  G+  E + +     R  L   + V +   F  C
Sbjct: 81  PFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGI-----RNDLYTFNIVINC--FCCC 133

Query: 72  -KSQKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            +   A+    +  KL   P   T   L++  C  ++ S+    V ++V E G K D   
Sbjct: 134 FQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-EIGYKPDIVA 192

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  +I +  K+ +V+  F+ F E+   GI PNV TY AL++G   + + + A      M 
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            K + P+ + ++AL+ A  ++G V  A ++  EM      +DPD +T  +L+       +
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVR--MSIDPDIVTYSSLINGLCLHDR 310

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D A +++ ++           Y   IN   +    E    ++ +M+++G++ + V  + 
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     AG V+ A E   +    GIS  I +Y+ L+G   +    +KAL ++E M+  +
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           +   + T   +I  +C   ++ +   +   +   GL P+ +TY+ ++     K  +    
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVE 490

Query: 430 MLLSQAKEDGVIPN 443
            L ++ K++G++ N
Sbjct: 491 ALYTKMKQEGLMKN 504



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 154/341 (45%), Gaps = 4/341 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  L++   K  K D +  +  +M   GI  +++T+  +I+      QV+ A    G M 
Sbjct: 88  FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               +PDRV   +L+    +   V  A  ++ +M  E+    PD +   A++ +     +
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEIG-YKPDIVAYNAIIDSLCKTKR 205

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           V+ A + +K I +  I+     YT  +N    +  W  A  +  DM KK + P+ +  SA
Sbjct: 206 VNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSA 265

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           L+D     GKV  A E+ +E     I   I++YSSL+          +A ++++ M S  
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
               V + N LI   C   ++   M++  +M   GL  NT+TY+ L+    +  DV+   
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 385

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
              SQ    G+ P++  +  ++ G+C     EKA  + E +
Sbjct: 386 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 182/387 (47%), Gaps = 46/387 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   R+ R+S+ + L++ M   G       Y+A   ++CK+++ + +AF FFK +     
Sbjct: 163 NGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKR-VNDAFDFFKEIERKGI 221

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P + T+  L++ +C SS+ S+ A ++L  + +  +  +   Y+ L+    K+GKV    
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSDAA-RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E+F EMV   I+P++ TY +LI+G     ++ +A   + +M SK    D V +N LI   
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++  V+    +  EM+     +  + +T   L++    AG VD+A+E +  +  + I  
Sbjct: 341 CKAKRVEDGMKLFREMSQ--RGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI-- 396

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +P+++T  I                              L  L D     G++E A  I 
Sbjct: 397 SPDIWTYNI-----------------------------LLGGLCD----NGELEKALVIF 423

Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           ++ + + + + I++Y++++ G C   K  ++A  L+  +    LKP + T   +++ LC 
Sbjct: 424 EDMQKREMDLDIVTYTTVIRGMCKTGK-VEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCT 482

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYS 413
              L +   + + MK  GL  N  T S
Sbjct: 483 KGLLHEVEALYTKMKQEGLMKNDCTLS 509


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 209/452 (46%), Gaps = 27/452 (5%)

Query: 70  VCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +CK+ + ++ A    + +PN    P   TF  LM       D EGA ++  L+ E+G + 
Sbjct: 209 LCKAHQ-LRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCEL 267

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
                  L+    K G+++      +E    G  P+  T+ AL++G  + G + +     
Sbjct: 268 TSVSVNVLVNGLCKEGRIEEALRFIYE--EEGFCPDQVTFNALVNGLCRTGHIKQGLEMM 325

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M  K  + D   +N+LI+   + G +D A ++L  M +     +P+ +T   L+    
Sbjct: 326 DFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVS--RDCEPNTVTYNTLIGTLC 383

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPD 303
               V+ A E+ +++    +   P+V T    I     T + E A  ++++M +KG  PD
Sbjct: 384 KENHVEAATELARVLTSKGV--LPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPD 441

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 362
           E   S LI+      +++ A  +L+E +  G +  ++ Y++L+ G C N +    A +++
Sbjct: 442 EFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNR-VGDAEDIF 500

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           + M+ + +  +  T N LI  LC   ++ +  +++  M   GL P+  TY+ +L    ++
Sbjct: 501 DQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQ 560

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-------SRRYEKARTLNEHVLSFNSG 474
            D++    ++     +G  P++V +  +I G+C       + +  ++  +   VL+  + 
Sbjct: 561 GDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAY 620

Query: 475 RPQIE----NKWTSLALMVYREAIVAGTIPTV 502
            P I+     K T  A+ ++RE +  G  P V
Sbjct: 621 NPVIQALCKRKRTKEAMRLFREMMEKGDPPDV 652



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 106/434 (24%), Positives = 182/434 (41%), Gaps = 52/434 (11%)

Query: 70  VCKSQKAIKEAFRFFKLVPN--PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKAD 126
           +CK  + I+EA RF        P   TFN L++ +C +    +G  +++  + E G + D
Sbjct: 279 LCKEGR-IEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQG-LEMMDFMLEKGFELD 336

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y +LI+   K G++D   E+ H MV+   EPN  TY  LI    K   V  A     
Sbjct: 337 VYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELAR 396

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA--- 243
           ++ SK V PD   FN+LI     +   + A ++  EM  +    DPD  T   L+++   
Sbjct: 397 VLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEK--GCDPDEFTYSILIESLCS 454

Query: 244 ---------------------------------CANAGQVDRAREVYKMIHKYNIKGTPE 270
                                            C N  +V  A +++  +    +  +  
Sbjct: 455 ERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKN-NRVGDAEDIFDQMEMLGVSRSSV 513

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   IN   ++   E A  + D M  +G+ PD+   + ++ +    G ++ A +I+Q  
Sbjct: 514 TYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNM 573

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST---MNALITALCDG 387
              G    I++Y +L+G    A     A +L   ++S+++K  V T    N +I ALC  
Sbjct: 574 TLNGCEPDIVTYGTLIGGLCKAGRVDVASKL---LRSVQMKGMVLTPQAYNPVIQALCKR 630

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVM 446
            +  + M +  +M   G  P+ ITY I+    C     ++  +    +  E G++P    
Sbjct: 631 KRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPS 690

Query: 447 FKCII-GMCSRRYE 459
           F  +  G+CS   E
Sbjct: 691 FGFLAEGLCSLSME 704



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 15/369 (4%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEA--GLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           STF + +   A+S         L L+ E    +K D + Y   ++   K+ K+  +  + 
Sbjct: 128 STFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLH 187

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +MV   + P+V T+  LI    KA Q+  A      M +  ++PD   F  L+    + 
Sbjct: 188 SKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEE 247

Query: 211 GAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVYKMIHKYNIK 266
             V+ A    +++ E   E+  V     ++  L+      G+++ A R +Y+   +    
Sbjct: 248 ADVEGALRIKELMVESGCELTSV-----SVNVLVNGLCKEGRIEEALRFIYE---EEGFC 299

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                +   +N   +TG  +    + D M +KG   D    ++LI      G+++ A EI
Sbjct: 300 PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEI 359

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L    ++      ++Y++L+G      + + A EL   + S  + P V T N+LI  LC 
Sbjct: 360 LHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCL 419

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
                  ME+  +MK  G  P+  TYSIL+ +   +  ++  LMLL + +  G   N+V+
Sbjct: 420 TSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVV 479

Query: 447 FKCII-GMC 454
           +  +I G+C
Sbjct: 480 YNTLIDGLC 488



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 51/257 (19%), Positives = 112/257 (43%), Gaps = 3/257 (1%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           VF+ L+    ++G+ D    +L +M++   PVD     I     A ++    +       
Sbjct: 94  VFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLL 153

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
           M   + +K     Y +A++   +    +   +++  M    V PD    + LI     A 
Sbjct: 154 MERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAH 213

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           ++  A  +L++  N G+     ++++LM       + + AL + E M     + T  ++N
Sbjct: 214 QLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVN 273

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            L+  LC   ++ + +  + + +  G CP+ +T++ L+    R   ++ GL ++    E 
Sbjct: 274 VLVNGLCKEGRIEEALRFIYEEE--GFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEK 331

Query: 439 GVIPNLVMFKCII-GMC 454
           G   ++  +  +I G+C
Sbjct: 332 GFELDVYTYNSLISGLC 348



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 95/239 (39%), Gaps = 6/239 (2%)

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIH-KYNIKGTPEVYTIAINCCSQTGDWE 286
           HP+ PD  +   L+           A  +++    + N    P V+   +   ++ G ++
Sbjct: 51  HPLPPD-FSPSQLLDLLRRQPDSSSALSLFQWASAQPNYSAHPSVFHELLRQLARAGSFD 109

Query: 287 FACSVYDDMTKKGVIPDE-VFLSALIDFA-GHAGKVEAAFEILQEAKNQGISVGIISYSS 344
              ++   M    +  DE  FL  L  +A  H    E     L   ++  +      Y+ 
Sbjct: 110 SMLTLLRQMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFLLMERDFAVKPDTRFYNV 169

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
            +     A   +    L+  M +  + P VST N LI ALC   QL   + +L DM + G
Sbjct: 170 ALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYG 229

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 461
           L P+  T++ L+     + DVE  L +     E G     V    ++ G+C   R E+A
Sbjct: 230 LRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEA 288


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 154/326 (47%), Gaps = 6/326 (1%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G K +   Y  +I +  K+G V    +   +M+  G+EP+   Y  ++DG  KA  + +A
Sbjct: 44  GSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEA 103

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +  M+S     D   +  LI + G+    + A  +  EM  E     P       ++
Sbjct: 104 CKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEM--EERGCTPSAPAYTNVI 161

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKG 299
                AG+++ A  V K +   N+   P+ YT+   I   S+TG  E AC +++ M K G
Sbjct: 162 DIYCKAGRIESAMVVLKKMLDKNL--APDDYTLNSLITAVSRTGRTELACEIFERMKKSG 219

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           V  + V  +A++D  G AGKV  A++ + E + +GI    I++++L+     AK   +A 
Sbjct: 220 VAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAY 279

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           ++ + M+S  L P V T   +I A      + K  E+  DM+  G   N +TY++L+ A 
Sbjct: 280 KVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDAL 339

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLV 445
            +    +    +    K+ G++P+ +
Sbjct: 340 VKAGRYQDARDIYFDMKKKGILPDAI 365



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 161/353 (45%), Gaps = 4/353 (1%)

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           +L  +Q+   +    +   +I    +S ++  + + F E+   G +PN +TY  +I    
Sbjct: 1   MLAAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLV 60

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           KAG V  A      M    ++PD +++N ++   G++  +D A  + A M +   P D  
Sbjct: 61  KAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPAD-- 118

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T   L+++     + + A  ++  + +     +   YT  I+   + G  E A  V  
Sbjct: 119 DYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLK 178

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M  K + PD+  L++LI      G+ E A EI +  K  G++V  +S+++++  C  A 
Sbjct: 179 KMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAG 238

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
               A +  + M++  +KP   T N LI  L       +  +VL +M+S GL P+  TY+
Sbjct: 239 KVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYT 298

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
            ++ A  +  ++     +    ++ G   N+V +  +I    +  RY+ AR +
Sbjct: 299 CMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDI 351



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 145/305 (47%), Gaps = 2/305 (0%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A   L  + + GL+ D  LY  ++    K+  +D   ++F  M + G   + +TY  LI 
Sbjct: 68  AMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIR 127

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
              +  +  +A   +  M  +   P    +  +I    ++G ++ A  VL +M  +   +
Sbjct: 128 SLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDK--NL 185

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD  T+ +L+ A +  G+ + A E+++ + K  +      +   ++CC + G    A  
Sbjct: 186 APDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQ 245

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
             D+M  +G+ P+ +  + LI+  G A     A+++LQE ++ G++  + +Y+ ++ A +
Sbjct: 246 FMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFA 305

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A N  KA E++  M+       V T N LI AL    +     ++  DMK  G+ P+ I
Sbjct: 306 KAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAI 365

Query: 411 TYSIL 415
           T ++L
Sbjct: 366 TATVL 370



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 2/226 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+   +  ++ +   +   E A  VL+ + +  L  D     +LIT  +++G+ +   E+
Sbjct: 152 PSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEI 211

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M  +G+  N  ++ A++D C KAG+V  A+     M ++ +KP+ + FN LI   G+
Sbjct: 212 FERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGR 271

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +     A+ VL EM +    + PD  T   +++A A AG + +A E++  + K       
Sbjct: 272 AKYASEAYKVLQEMRSA--GLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANV 329

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
             Y + I+   + G ++ A  +Y DM KKG++PD +  + L   AG
Sbjct: 330 VTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVLQQLAG 375



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 144/308 (46%), Gaps = 13/308 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVPNPT 91
           L++ G +   +D L+ M + GL + D + +    +       I EA + F   K +  P 
Sbjct: 59  LVKAGNVVLAMDFLDKMIKTGL-EPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPA 117

Query: 92  LS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+ +L+      K  E A  +   ++E G       YT +I    K+G++++   V 
Sbjct: 118 DDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVL 177

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M++  + P+ +T  +LI   ++ G+   A   +  M+   V  + V FNA++  CG++
Sbjct: 178 KKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKA 237

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TP 269
           G V  A+  + EM  E   + P+ IT   L+      G+   A E YK++ +    G TP
Sbjct: 238 GKVGLAYQFMDEM--EARGIKPNSITFNTLINCL---GRAKYASEAYKVLQEMRSAGLTP 292

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +V  YT  I   ++ G+   A  ++ DM K G   + V  + LID    AG+ + A +I 
Sbjct: 293 DVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIY 352

Query: 328 QEAKNQGI 335
            + K +GI
Sbjct: 353 FDMKKKGI 360



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 12/193 (6%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++ N LI    R GR     ++ E M++ G+  ++ V      + C     +  A++F  
Sbjct: 190 YTLNSLITAVSRTGRTELACEIFERMKKSGVA-VNTVSFNAMLDCCGKAGKVGLAYQFMD 248

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P   TFN L++    +K +  A++VL+ ++ AGL  D   YT +I   AK+G
Sbjct: 249 EMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAG 308

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV--- 198
            +   FE+F +M  AG   NV TY  LID   KAG+   A   Y  M+ K + PD +   
Sbjct: 309 NMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITAT 368

Query: 199 VFNALITACGQSG 211
           V   L   C  SG
Sbjct: 369 VLQQLAGKCKLSG 381


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 127/575 (22%), Positives = 227/575 (39%), Gaps = 76/575 (13%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           LQF Y   K   Y HD+   +   NRL++                K L   D   H R  
Sbjct: 88  LQFFYWISKRHFYKHDMGCFVSMLNRLVKD---------------KILAPAD---HVRIL 129

Query: 69  NV--CKSQKAIKEAFRFFKLVPNP-------TLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
            +  C+++  +K    F   + +        TL +FN L+           A  V   + 
Sbjct: 130 MIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIF 189

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
            +G+K     + T+I    K GKV     VF+++    + P+  TY +LI G  +  ++ 
Sbjct: 190 SSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLD 249

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           KAF  +  M      P+ V ++ LI      G +  A D+L EM  +   ++P   T   
Sbjct: 250 KAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEK--GIEPTVYTYTV 307

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
            + +  + G+VD A  + + + K     + + YT  I+   + G  E A  +Y  M K+G
Sbjct: 308 PISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEG 367

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           ++P+ V  +ALI+     G+   A +I    +  G      +Y+ ++       + +KA+
Sbjct: 368 LVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAM 427

Query: 360 ELYEHMKSIKLKPTVSTMNA-----------------------------------LITAL 384
            ++  M      PTV T N                                    LI+  
Sbjct: 428 VVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGF 487

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C G +L        +M   G+ PN  TY+ ++    ++  ++V L L  + +E+G   ++
Sbjct: 488 CKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASI 547

Query: 445 VMFKCIIGMCSR--RYEKA---------RTLNEHVLSFNSGRPQI-ENKWTSLALMVYRE 492
             +  II   S+  R+ +A         + L  + +++ S    + +N  T+LA  ++ E
Sbjct: 548 ETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHE 607

Query: 493 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 527
                 +P     + ++  L      D  ERL EN
Sbjct: 608 MEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTEN 642



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 118/485 (24%), Positives = 211/485 (43%), Gaps = 23/485 (4%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           ++  V   L ++N +I    ++G++ E + +   + +  L      Y +     C+++K 
Sbjct: 189 FSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRK- 247

Query: 77  IKEAFRFF-KLVP---NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           + +AF  F ++V    NP   T++ L++ +C   +  E A  +L  + E G++     YT
Sbjct: 248 LDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGE-AMDMLEEMTEKGIEPTVYTYT 306

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
             I++    G+VD    +   M   G  P+V TY A+I G  +AG++  A G Y  M  +
Sbjct: 307 VPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKE 366

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            + P+ V +NALI      G    A  +   M  E H    +  T   ++K       ++
Sbjct: 367 GLVPNTVTYNALINELCTEGRFGIALKIFDWM--EGHGTLANAQTYNQIIKGLFGMDDIE 424

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +A  V+  + K     T   Y   I    + G    A      M +    PDE     LI
Sbjct: 425 KAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELI 484

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKL 370
                 GK+++A     E    GIS    +Y++++ G C   K    AL L+E M+    
Sbjct: 485 SGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGK-IDVALSLFERMEENGC 543

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
             ++ T NA+I+ L  G++  +  +  + M   GL PNTITY+ L+    +     +   
Sbjct: 544 SASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFK 603

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALM 488
           +  + ++   +PN   +  +I G+C   + + A  L E     N   P I+  +++L   
Sbjct: 604 IFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLTE-----NGCEPTIDT-YSTLVSG 657

Query: 489 VYREA 493
           + RE 
Sbjct: 658 LCREG 662



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 195/439 (44%), Gaps = 17/439 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFK--LVPNPTLS 93
           GR+ + I+L+  M +KG     + Y A     F   K + AI    +  K  LVPN    
Sbjct: 316 GRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTV-- 373

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+N L++   +      A ++   ++  G  A+ + Y  +I        ++    VF++M
Sbjct: 374 TYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKM 433

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +  G  P V TY  LI    K G +  A     +M+  N +PD   +  LI+   + G +
Sbjct: 434 LKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKL 493

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           D A     EM      + P+  T  A++      G++D A  +++ + +     + E Y 
Sbjct: 494 DSATSFFYEMLK--CGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYN 551

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+  S+   +  A      MT++G+ P+ +  ++LI+          AF+I  E + +
Sbjct: 552 AIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKK 611

Query: 334 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
                  +Y+SL+ G C   K     ++  E +     +PT+ T + L++ LC   +  +
Sbjct: 612 NCLPNAHTYTSLIYGLCQEGK-----VDAAERLTENGCEPTIDTYSTLVSGLCREGRSNE 666

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
             +++ +MK  GL P+   Y  LLVA  +   V+  L + +     G  P+L ++K +I 
Sbjct: 667 ASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLIC 726

Query: 452 GMCS-RRYEKARTLNEHVL 469
            +C   R E+A  + + +L
Sbjct: 727 ALCGVSRAEEALNIFQSLL 745



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 177/415 (42%), Gaps = 9/415 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPN 89
           N L  +GR    + + + ME  G L   + Y+      F +   +KA+    +  K  P+
Sbjct: 380 NELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPS 439

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ T+N L+           A + L +++E+  + D + Y  LI+   K GK+D+    
Sbjct: 440 PTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSF 499

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+EM+  GI PN  TY A+IDG  K G++  A   +  M           +NA+I+   +
Sbjct: 500 FYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSK 559

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
                 A    A+M  +   + P+ IT  +L+         + A +++  + K N     
Sbjct: 560 GNRFSEAEKFCAKMTEQ--GLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNA 617

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  I    Q G  + A    + +T+ G  P     S L+      G+   A ++++ 
Sbjct: 618 HTYTSLIYGLCQEGKVDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVEN 673

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K +G+S  +  Y SL+ A   +     ALE++  M     +P +     LI ALC   +
Sbjct: 674 MKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSR 733

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
             + + +   +       + I +++L+    ++ D ++ +  L   +     P+L
Sbjct: 734 AEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSL 788



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L R+GR +E   L+E+M+ KGL    ++Y +     CKS K +  A   F L+      P
Sbjct: 658 LCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLK-VDCALEIFNLMAVKGFQP 716

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L  + +L+        +E A  + + + +    +D  ++T L+    + G  D   +  
Sbjct: 717 HLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFL 776

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           + M +    P++HTY  L    +K G+
Sbjct: 777 YLMESRNCTPSLHTYIILARELSKVGK 803


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 201/427 (47%), Gaps = 12/427 (2%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RIS+ + L++ M   G          + H  F +  K+ +A+    +  +    P L T+
Sbjct: 168 RISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH-NKASEAVALVDQMVQRGCQPDLVTY 226

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
             +++      D + A  +L  ++ A +KA+  ++ T+I +  K   V+   ++F EM  
Sbjct: 227 GTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMET 286

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            GI PNV TY +LI+     G+ + A      M  K + P+ V FNALI A  + G +  
Sbjct: 287 KGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVE 346

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  +  EM      +DPD IT   L+       ++D A++++K +   +     + Y   
Sbjct: 347 AEKLHEEMIQ--RSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTL 404

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           IN   +    E    ++ +M+++G++ + V  + +I     AG  ++A  + ++  +  +
Sbjct: 405 INGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRV 464

Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
              I++YS L+ G CS  K    AL ++++++  +++  +   N +I  +C   ++ +  
Sbjct: 465 PTDIMTYSILLHGLCSYGK-LDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAW 523

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           ++     SL + P+ +TY+ ++     K  ++    L  + KEDG +PN   +  +I   
Sbjct: 524 DLFC---SLSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRAN 580

Query: 455 SRRYEKA 461
            R  ++A
Sbjct: 581 LRDCDRA 587



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 184/433 (42%), Gaps = 47/433 (10%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQK---AIKEAFRF 83
           +N+L+    +  +    I L E M+  G+   D   ++ F N  C+  +   A+    + 
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGI-SHDLYTYSIFINCFCRRSQLSLALAVLAKM 144

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            KL   P + T + L++    SK    A  ++  + E G K D   +TTLI       K 
Sbjct: 145 MKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKA 204

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                +  +MV  G +P++ TYG +++G  K G +  A      M +  +K + V+FN +
Sbjct: 205 SEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTI 264

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I +  +   V+ A D+  EM  E   + P+ +T  +L                       
Sbjct: 265 IDSLCKYRHVEVAVDLFTEM--ETKGIRPNVVTYNSL----------------------- 299

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                       INC    G W  A  +  +M +K + P+ V  +ALID     GK+  A
Sbjct: 300 ------------INCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEA 347

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            ++ +E   + I    I+Y+ L+          +A ++++ M S    P + T N LI  
Sbjct: 348 EKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLING 407

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
            C   ++   +E+  +M   GL  NT+TY+ ++    +  D +   M+  Q   + V  +
Sbjct: 408 FCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTD 467

Query: 444 LVMFKCII-GMCS 455
           ++ +  ++ G+CS
Sbjct: 468 IMTYSILLHGLCS 480



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 165/394 (41%), Gaps = 2/394 (0%)

Query: 58  DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           D  ++   R  ++ K   A+       K  P P++  FN L+S  A     E    +   
Sbjct: 49  DYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQ 108

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +Q  G+  D   Y+  I    +  ++     V  +M+  G EP++ T  +L++G   + +
Sbjct: 109 MQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKR 168

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           ++ A      M     KPD   F  LI           A  ++ +M        PD +T 
Sbjct: 169 ISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ--RGCQPDLVTY 226

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
           G ++      G +D A  +   +    IK    ++   I+   +    E A  ++ +M  
Sbjct: 227 GTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMET 286

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           KG+ P+ V  ++LI+   + G+   A  +L     + I+  ++++++L+ A        +
Sbjct: 287 KGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVE 346

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A +L+E M    + P   T N LI   C  ++L +  ++   M S    PN  TY+ L+ 
Sbjct: 347 AEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLIN 406

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              +   VE G+ L  +  + G++ N V +  II
Sbjct: 407 GFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/302 (19%), Positives = 136/302 (45%), Gaps = 15/302 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI    ++G++ E   L E+M ++ + D D + +    N       + EA + FK 
Sbjct: 330 TFNALIDAFFKEGKLVEAEKLHEEMIQRSI-DPDTITYNLLINGFCMHNRLDEAKQMFKF 388

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P + T+N L++     K  E   ++ R + + GL  +   YTT+I    ++G 
Sbjct: 389 MVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGD 448

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            D+   VF +MV+  +  ++ TY  L+ G    G++  A   +  ++   ++ +  ++N 
Sbjct: 449 CDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNT 508

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I    ++G V  A+D+   ++     + PD +T   ++    +   +  A ++++ + +
Sbjct: 509 MIEGMCKAGKVGEAWDLFCSLS-----IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKE 563

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                    Y   I    +  D   +  +  +M   G + D   +S + +   H G+++ 
Sbjct: 564 DGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNML-HDGRLDK 622

Query: 323 AF 324
           +F
Sbjct: 623 SF 624



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 102/238 (42%), Gaps = 14/238 (5%)

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  ++ DM K    P  V  + L+       K E    + ++ +  GIS  + +YS  + 
Sbjct: 67  AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                     AL +   M  +  +P + T+++L+   C   ++   + ++  M  +G  P
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 456
           +T T++ L+      +     + L+ Q  + G  P+LV +  ++ G+C R          
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLL 246

Query: 457 -RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
            + E AR +  +V+ FN+    + + +   +A+ ++ E    G  P V   + ++ CL
Sbjct: 247 NKMEAAR-IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCL 303


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 187/401 (46%), Gaps = 10/401 (2%)

Query: 63  YHARFFNVCKS---QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           Y+    + CK    Q+A++  F+   +  +P   T+N+L++  + S + E A ++++ + 
Sbjct: 205 YNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDML 264

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
             GL+     Y  LI    + G+++    +  EM++ G  P V TY  ++ G  K G+V+
Sbjct: 265 RLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVS 324

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            A     +M +KN+ PD V +N LI    + G +  AF + AE+      + P  +T   
Sbjct: 325 DARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAEL--RYRSLAPSVVTYNT 382

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTK 297
           L+      G +D A  +   + K+     P+V+T    +    + G+   A  ++D+M  
Sbjct: 383 LIDGLCRLGDLDVAMRLKDEMIKHG--PDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLN 440

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           +G+ PD       I      G    AF + +E   +G    +I+Y+  +       N ++
Sbjct: 441 RGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKE 500

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A EL + M    L P   T  ++I A      L K   +  +M S G+ P+ +TY++L+ 
Sbjct: 501 ASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIH 560

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
           +   +  +++ ++   +  E GV PN++ +  +I G+C  R
Sbjct: 561 SYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVR 601



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 170/356 (47%), Gaps = 11/356 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + GR+S+   LL+ M  K L+     Y+   +   +    I EAF  F  +      P
Sbjct: 317 LCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGN-IGEAFLLFAELRYRSLAP 375

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++ T+N L+       D + A ++   + + G   D   +TT +    K G +    E+F
Sbjct: 376 SVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELF 435

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM+N G++P+   Y   I G  K G  +KAFG    M ++   PD + +N  I    + 
Sbjct: 436 DEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKL 495

Query: 211 GAVDRAFDVLAEM--NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           G +  A +++ +M  N  V    PDH+T  +++ A   AG + +AR ++  +    I  +
Sbjct: 496 GNLKEASELVKKMLYNGLV----PDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPS 551

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT+ I+  +  G  + A   + +M +KGV P+ +  +ALI+      K++ A+    
Sbjct: 552 VVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFA 611

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E + +GIS    +Y+ L+    N  +WQ+AL LY+ M   +++P   T  +L+  L
Sbjct: 612 EMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKHL 667



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 170/396 (42%), Gaps = 11/396 (2%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +++Y+ LIR    +G+I E   L E+M  +G +     Y+   + +CK  + + +A +  
Sbjct: 272 VYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGR-VSDARKLL 330

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            ++ N    P L ++N L+       +   AF +   ++   L      Y TLI    + 
Sbjct: 331 DVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRL 390

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G +D    +  EM+  G +P+V T+   + G  K G +  A   +  M ++ ++PDR  +
Sbjct: 391 GDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAY 450

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
              I    + G   +AF +  EM A   P  PD IT    +      G +  A E+ K +
Sbjct: 451 ITRIVGELKLGDPSKAFGMQEEMLARGFP--PDLITYNVFIDGLHKLGNLKEASELVKKM 508

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +      YT  I+     G    A +++ +M  KG+ P  V  + LI      G++
Sbjct: 509 LYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRL 568

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A     E   +G+   +I+Y++L+      +   +A   +  M++  + P   T   L
Sbjct: 569 KLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTIL 628

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           I   C+     + + +  DM    + P++ T+  LL
Sbjct: 629 INENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLL 664



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 78/384 (20%), Positives = 165/384 (42%), Gaps = 9/384 (2%)

Query: 66  RFFNVCKSQKAIKEAFRFFK-----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           RFF   + Q   K +   +      L  N  + +   +M    S K   G   V+    E
Sbjct: 66  RFFRWAERQTGFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVS-SSE 124

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA-KAGQVA 179
             + +   +   L+    K   ++    VF++MV+ G+ P+V     ++     +   + 
Sbjct: 125 VSMPSVKLILDLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNID 184

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            A   Y +M    + P  V +N ++ +  + G V  A  +L +M A      P+ +T   
Sbjct: 185 VAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQA--MGCSPNDVTYNV 242

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+   +++G++++A+E+ + + +  ++ +   Y   I    + G  E A  + ++M  +G
Sbjct: 243 LVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRG 302

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
            +P  V  + ++      G+V  A ++L    N+ +   ++SY++L+   +   N  +A 
Sbjct: 303 AVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAF 362

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            L+  ++   L P+V T N LI  LC    L   M +  +M   G  P+  T++  +   
Sbjct: 363 LLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRGF 422

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPN 443
            +  ++ +   L  +    G+ P+
Sbjct: 423 CKMGNLPMAKELFDEMLNRGLQPD 446



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 101/207 (48%), Gaps = 1/207 (0%)

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            +D AREVY ++ +  I  T   Y   ++   + G  + A  +   M   G  P++V  +
Sbjct: 182 NIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYN 241

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            L++   H+G++E A E++Q+    G+ V + +Y  L+         ++A  L E M S 
Sbjct: 242 VLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSR 301

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
              PTV T N ++  LC   ++    ++L  M +  L P+ ++Y+ L+    R  ++   
Sbjct: 302 GAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEA 361

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-GMC 454
            +L ++ +   + P++V +  +I G+C
Sbjct: 362 FLLFAELRYRSLAPSVVTYNTLIDGLC 388



 Score = 46.2 bits (108), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 18/193 (9%)

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS------------ 344
           + G    E+  S ++D     G + +A+ ++++  +  +  G+I   S            
Sbjct: 74  QTGFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKLI 133

Query: 345 ---LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ-LPKTMEVLSDM 400
              L+         +K L ++  M S  L P V   N ++  L D D  +    EV + M
Sbjct: 134 LDLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVM 193

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RY 458
              G+CP  +TY+ +L +  +K  V+  L LL Q +  G  PN V +  ++   S     
Sbjct: 194 VECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEM 253

Query: 459 EKARTLNEHVLSF 471
           E+A+ L + +L  
Sbjct: 254 EQAKELIQDMLRL 266


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 125/569 (21%), Positives = 246/569 (43%), Gaps = 65/569 (11%)

Query: 26  SEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  LH+Y  LIR    +GRI +   LL++M R+G++     Y+A     CKS + +K+A 
Sbjct: 285 SPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGR-LKDAL 343

Query: 82  RFFKLVP----NPTLSTFNMLM-SVCASSKDS---------------------------- 108
               L+     NP   T+N L+  +C    D                             
Sbjct: 344 GIKTLMEGNGCNPDDWTYNSLIHGLCGGKPDEAEELLNGAIARGFSPTVITFTNIINGYC 403

Query: 109 -----EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
                + A +V  ++  +  K D + Y  LI+   K  ++    +  +E+   G+ PNV 
Sbjct: 404 KAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVV 463

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
            Y ++ID   K G+V  A   + +   +  +P+   +++LI    Q   + +A  ++ +M
Sbjct: 464 IYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKM 523

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
             +   + P  IT   L++      + D A  +++M+ +  +    + Y +  +   ++G
Sbjct: 524 QED--GITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSG 581

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
             E A   Y  + KKGV+  +V  ++L+D    AG  E A  ++++  N+G      +YS
Sbjct: 582 RAEEA---YSFLVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHTYS 638

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            L+ A    K   +AL + + M    +K  +     +I+ +    +      + ++M S 
Sbjct: 639 VLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISS 698

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 463
           G  P+ ITY++ + +  +   +E    L+ + + +GV P++V +   I  C         
Sbjct: 699 GHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGH------- 751

Query: 464 LNEHVLSFNSGRPQIE-----NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 518
           +     +F++ +  I+     N WT   L+ +   +       V+  S +   ++L    
Sbjct: 752 MGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMSLANAHYVD-TSGMWNWIKLDTVW 810

Query: 519 DIRERLVENLGVSADALKRSNLCSLIDGF 547
            + ER+V++ G++  A+  S   S+I GF
Sbjct: 811 QLLERMVKH-GLNPTAVTYS---SIIAGF 835



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 141/320 (44%), Gaps = 6/320 (1%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           ++  +C +    E    +L ++Q+ G   +   YT LI    K G++     +  EM   
Sbjct: 259 LIQGLCETRCVREALVLLLMMLQD-GCSPNLHTYTLLIRGLCKEGRIHDARVLLDEMPRR 317

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSGAVDR 215
           G+ P+V TY A+IDG  K+G++  A G   +M      PD   +N+LI   CG  G  D 
Sbjct: 318 GVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCG--GKPDE 375

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A ++L    A      P  IT   ++     A ++D A  V  ++     K   + Y + 
Sbjct: 376 AEELLN--GAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVL 433

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+   +    + A    +++   G+ P+ V  +++ID     GKV AA E+ +  +++G 
Sbjct: 434 ISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGC 493

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
                +YSSL+      +   KA+ L   M+   + P V T   LI   C   +      
Sbjct: 494 RPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFR 553

Query: 396 VLSDMKSLGLCPNTITYSIL 415
           +   M+  GL P+   Y++L
Sbjct: 554 LFEMMEQNGLTPDEQAYNVL 573



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 169/433 (39%), Gaps = 78/433 (18%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF-------------------FKLV 87
           L E ME+ GL   ++ Y+     +CKS +A +EA+ F                   F   
Sbjct: 554 LFEMMEQNGLTPDEQAYNVLTDALCKSGRA-EEAYSFLVKKGVVLTKVTYTSLVDGFSKA 612

Query: 88  PNPTLS-----------------TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
            N   +                 T+++L+      K    A  +L  +   G+K +   Y
Sbjct: 613 GNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAY 672

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T +I+   K GK D    +F+EM+++G +P+  TY   I    K G++ +A    G M  
Sbjct: 673 TIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMER 732

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK-----ACA 245
             V PD V +N  I  CG  G +D AF  L  M       +P++ T   L+K     + A
Sbjct: 733 NGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDA--SCEPNYWTYWLLLKHFLKMSLA 790

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-----ACSVYDDMTKKGV 300
           NA  VD                              +G W +        + + M K G+
Sbjct: 791 NAHYVD-----------------------------TSGMWNWIKLDTVWQLLERMVKHGL 821

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            P  V  S++I     A ++E A  +L     + IS     Y+ L+  C + K ++KA  
Sbjct: 822 NPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAAS 881

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
              +M     +P + + + LIT LCD     K   +  D+  +    N + + IL     
Sbjct: 882 FVTNMIECGFQPHLESYHYLITGLCDEGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLL 941

Query: 421 RKDDVEVGLMLLS 433
           +   V++   LLS
Sbjct: 942 KAGHVDICSQLLS 954



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 168/401 (41%), Gaps = 8/401 (1%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMSVC 102
           L   + ++GLL     Y+      CK + ++  A R+F+L+    +     T N L+   
Sbjct: 170 LYSQLVQEGLLPDTVTYNTMIMAYCK-EGSLAIAHRYFRLLRESGMEMDTYTCNALLLGY 228

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
             + D   A  +L ++   G + +   YT LI    ++  V     +   M+  G  PN+
Sbjct: 229 CRTGDLRKACWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNL 288

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
           HTY  LI G  K G++  A      M  + V P    +NA+I    +SG +  A  +   
Sbjct: 289 HTYTLLIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTL 348

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  E +  +PD  T  +L+      G+ D A E+           T   +T  IN   + 
Sbjct: 349 M--EGNGCNPDDWTYNSLIHGLC-GGKPDEAEELLNGAIARGFSPTVITFTNIINGYCKA 405

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
              + A  V   M       D      LI       +++ A + L E    G+S  ++ Y
Sbjct: 406 EKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIY 465

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           +S++ A         ALE+++  +    +P   T ++LI  L    +L K M +++ M+ 
Sbjct: 466 TSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQE 525

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
            G+ P  ITY+ L+    +K + +    L    +++G+ P+
Sbjct: 526 DGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPD 566



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 166/410 (40%), Gaps = 27/410 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           LI+  ++ + + L+  M+  G+      Y       CK  +    AFR F+++      P
Sbjct: 507 LIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHE-FDNAFRLFEMMEQNGLTP 565

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               +N+L      S  +E A+  L    + G+      YT+L+   +K+G  +    + 
Sbjct: 566 DEQAYNVLTDALCKSGRAEEAYSFL---VKKGVVLTKVTYTSLVDGFSKAGNTEFAAALI 622

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +MVN G + + HTY  L+    K  ++ +A      M  + VK + V +  +I+   + 
Sbjct: 623 EKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKE 682

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G  D A  +  EM +  H   P  IT    + +    G+++ A  +   + +  +     
Sbjct: 683 GKHDHAKSMFNEMISSGH--KPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVV 740

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--------EVFL------SALIDFAGH 316
            Y + IN C   G  + A S    M      P+        + FL      +  +D +G 
Sbjct: 741 TYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMSLANAHYVDTSGM 800

Query: 317 AG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
               K++  +++L+     G++   ++YSS++     A   ++A  L +HM    + P  
Sbjct: 801 WNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNE 860

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKD 423
                LI   CD     K    +++M   G  P+  +Y  L+   C+  D
Sbjct: 861 EIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEGD 910



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 172/396 (43%), Gaps = 12/396 (3%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           ++S   +++D   A   ++ ++ AG   L    K Y   + +  +    + M +++ ++V
Sbjct: 116 MISCSGTAEDMREAVDAIQAIRRAGGKRLALSPKCYNLALRSLLRFDMTEHMGKLYSQLV 175

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G+ P+  TY  +I    K G +A A   + ++R   ++ D    NAL+    ++G + 
Sbjct: 176 QEGLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLR 235

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           +A  +L  M   +     +  +   L++       V  A  +  M+ +         YT+
Sbjct: 236 KACWLLMMM--PLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTL 293

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I    + G    A  + D+M ++GV+P     +A+ID    +G+++ A  I    +  G
Sbjct: 294 LIRGLCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNG 353

Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            +    +Y+SL+ G C    +  +A EL     +    PTV T   +I   C  +++   
Sbjct: 354 CNPDDWTYNSLIHGLCGGKPD--EAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDA 411

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           + V S M S     +   Y +L+    +K  ++     L++   +G+ PN+V++  II  
Sbjct: 412 LRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDA 471

Query: 454 CSRRYEKARTLNEHVLSFNSG-RPQIENKWTSLALM 488
             +  +    L    L+ + G RP   N WT  +L+
Sbjct: 472 YCKVGKVGAALEVFKLTEHEGCRP---NAWTYSSLI 504


>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 180/385 (46%), Gaps = 7/385 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L+S  A     + A ++   ++E GL+   K+YTTL+    K GKV+    +
Sbjct: 222 PDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGL 281

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM        V TY  LI G  K+G+V  A+  Y  M     KPD V+ N LI   G+
Sbjct: 282 VKEMRARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGR 341

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-GQVDRAREVYKMIHKYNIKGT 268
           S  +  A  +  EM  ++    P+ +T   ++K+   A   +  A   ++ + K  I  +
Sbjct: 342 SNHLRDAIKLFDEM--KLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPS 399

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+I I+   +T   E A  + ++M +KG  P      +LI+  G A + + A E+ Q
Sbjct: 400 SFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQ 459

Query: 329 EAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           E K N G S   + Y+ ++          +A+ L+  MK +   P V   NAL+T +   
Sbjct: 460 ELKENCGCSSARV-YAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRA 518

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           +++ +   +   M+  G  P+  +++I+L    R    +  L + ++ K   + P++V F
Sbjct: 519 ERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSF 578

Query: 448 KCIIGMCSRR--YEKARTLNEHVLS 470
             I+G  SR   +E+A  L + + S
Sbjct: 579 NTILGCLSRAGLFEEAAKLMQEMSS 603



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 181/405 (44%), Gaps = 10/405 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRF 83
           +Y+ LI    +  R    I L ++M+  GL    K+Y      +F V K ++A+      
Sbjct: 226 TYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEM 285

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                  T+ T+  L+     S   E A+   + + + G K D  L   LI    +S  +
Sbjct: 286 RARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHL 345

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-GQVAKAFGAYGIMRSKNVKPDRVVFNA 202
               ++F EM      PNV TY  +I    +A   +++A   +  M+   + P    ++ 
Sbjct: 346 RDAIKLFDEMKLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSI 405

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    ++  V++A  +L EM+ +  P  P      +L+     A + D A E+++ + +
Sbjct: 406 LIDGYCKTNRVEKALLLLEEMDEKGFP--PCPAAYCSLINTLGVAKRYDVANELFQELKE 463

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                +  VY + I    + G    A +++++M K G  PD    +AL+     A +++ 
Sbjct: 464 NCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDE 523

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           AF + +  +  G +  I S++ ++   +     + ALE++  MK+  +KP V + N ++ 
Sbjct: 524 AFSLFRTMEENGCTPDINSHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILG 583

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
            L       +  +++ +M S G   + ITYS +L A  + DD ++
Sbjct: 584 CLSRAGLFEEAAKLMQEMSSKGFQYDLITYSSILEAVGKVDDCKM 628



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 151/342 (44%), Gaps = 4/342 (1%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   Y  LI    +      +++   +MV             ++    KA  V +A   +
Sbjct: 117 DSTTYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVF 176

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             ++ +  +P    +N++I    Q G  ++  ++  EM +EVH   PD +T  AL+ A A
Sbjct: 177 YQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCF-PDTVTYSALISAFA 235

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
              + D A  ++  + +  ++ T ++YT  +    + G  E A  +  +M  +  +    
Sbjct: 236 KLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVF 295

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + LI   G +G+VE A+   +     G    ++  ++L+     + + + A++L++ M
Sbjct: 296 TYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEM 355

Query: 366 KSIKLKPTVSTMNALITALCDGDQ-LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           K +   P V T N +I +L +    L +       MK  G+ P++ TYSIL+    + + 
Sbjct: 356 KLLNCAPNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNR 415

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGM--CSRRYEKARTL 464
           VE  L+LL +  E G  P    +  +I     ++RY+ A  L
Sbjct: 416 VEKALLLLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANEL 457



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 1/176 (0%)

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           + N +     Y   I C  +   +        DM K         LS ++   G A  V 
Sbjct: 111 RRNFEHDSTTYMALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVN 170

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-IKLKPTVSTMNAL 380
            A  +  + K +       +Y+S++       + +K  ELY  M S +   P   T +AL
Sbjct: 171 RALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSAL 230

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
           I+A    ++    + +  +MK  GL P    Y+ L+    +   VE  L L+ + +
Sbjct: 231 ISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMR 286


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 165/345 (47%), Gaps = 2/345 (0%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K V +  ++T+ ML+   + S   E A ++   + + G++ D  +YT++I    K G + 
Sbjct: 251 KNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMK 310

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
             F +F EM    + PN +TYGALI+G  KAG++  A      M+SK V  +RV+FN L+
Sbjct: 311 RAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLM 370

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G +D A  +   M  +   +D    T   +      + + + A+ +   + +  
Sbjct: 371 DGYCKKGMIDEALRLQNIMQQKGFEIDA--FTCNIIASGFCRSNRREEAKRLLLTMEERG 428

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +      ++I I+   +  ++  A  ++  M KKG  P  V  +A I+     GK+E A+
Sbjct: 429 VAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAY 488

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +++ E + +G+     +Y+SL+     + N  +ALEL+  M  + L   V T   +I+ L
Sbjct: 489 KLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGL 548

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
               +  +  ++  +M   G+ P+   YS L+ +  +   +  GL
Sbjct: 549 SKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPLVSGL 593



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 193/421 (45%), Gaps = 5/421 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPT 91
           L R G +  C++ L  M   G+      + A    +CK  + ++      +LV     P+
Sbjct: 163 LKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPS 222

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+N L++     KD  G  ++L L+++  +  +   YT LI   ++S K++   ++F 
Sbjct: 223 VITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFD 282

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM+  GIEP+V+ Y ++I+   K G + +AF  +  M  + + P+   + ALI    ++G
Sbjct: 283 EMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAG 342

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +  A  ++ +M ++   VD + +    LM      G +D A  +  ++ +   +     
Sbjct: 343 EMKAAEMMVNDMQSK--GVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFT 400

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
             I  +   ++   E A  +   M ++GV P+ V  S LID          A  + +  +
Sbjct: 401 CNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVME 460

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G +  +++Y++ +         ++A +L   M+   L P   T  +LI        + 
Sbjct: 461 KKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVD 520

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + +E+ ++M  LGL  N +TY++++    +    +    L  +  ++G++P+  ++  +I
Sbjct: 521 RALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLI 580

Query: 452 G 452
            
Sbjct: 581 A 581



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 106/477 (22%), Positives = 217/477 (45%), Gaps = 31/477 (6%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           +ML  V   ++  + + +V    ++ G + D +     +    +SG ++   E   +MV+
Sbjct: 122 DMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMVD 181

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           +GIE  V ++ A++DG  K G+V +A      +  K  KP  + +N L+    +   V  
Sbjct: 182 SGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGG 241

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
             ++L+ M   V  VD +  T   L++  + + +++ A +++  + K  I+    +YT  
Sbjct: 242 VNEILSLMEKNV--VDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSI 299

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           IN   + G+ + A  ++D+MT++ ++P+     ALI+ A  AG+++AA  ++ + +++G+
Sbjct: 300 INWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGV 359

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
            V  + +++LM          +AL L   M+    +    T N + +  C  ++  +   
Sbjct: 360 DVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKR 419

Query: 396 VLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           +L  M+  G+ PN +++SIL+ + C+ ++  E    L    ++ G  P++V +   I   
Sbjct: 420 LLLTMEERGVAPNVVSFSILIDIYCKEQNFAE-ARRLFKVMEKKGKAPSVVTYNAFI--- 475

Query: 455 SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 514
             RY K   + E                   A  +  E    G +P     + ++   + 
Sbjct: 476 -ERYCKKGKMEE-------------------AYKLINEMQERGLMPDTYTYTSLIDGERA 515

Query: 515 PYNADIRERL---VENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
             N D    L   +  LG++ + +  + + S +   G  D  AF L +E    GIVP
Sbjct: 516 SGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRAD-EAFKLYDEMNKEGIVP 571



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 146/346 (42%), Gaps = 50/346 (14%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +Y  LI    R  +I E   L ++M +KG+     +Y +     CK    +K A
Sbjct: 254 VDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGN-MKRA 312

Query: 81  FRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           F  F      +LVPN    T+  L++    + + + A  ++  +Q  G+  +  ++ TL+
Sbjct: 313 FVLFDEMTERRLVPNAY--TYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLM 370

Query: 135 TTCAKSGKVDAM-----------FEV------------------------FHEMVNAGIE 159
               K G +D             FE+                           M   G+ 
Sbjct: 371 DGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVA 430

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PNV ++  LID   K    A+A   + +M  K   P  V +NA I    + G ++ A+ +
Sbjct: 431 PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKL 490

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           + EM      + PD  T  +L+     +G VDRA E++  + +  +      YT+ I+  
Sbjct: 491 INEMQE--RGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGL 548

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           S+ G  + A  +YD+M K+G++PD+   S+LI      G + +  E
Sbjct: 549 SKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPLVSGLE 594


>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
 gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
          Length = 329

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 164/334 (49%), Gaps = 10/334 (2%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++T+ +L+    SS   +   ++   + E G+KAD  +YT +I    K G     F +F 
Sbjct: 1   VATYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFD 60

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           E+   G+  NVHTYGALIDG  KAG++  A      M+++ +  +++++N LI    + G
Sbjct: 61  ELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRG 120

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVYKMIHKYNIKGTPE 270
            +D AF V   M  E    + D  T+  +        Q + A R +  MI K  +   P 
Sbjct: 121 LIDEAFKVQVIM--EKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVV---PN 175

Query: 271 V--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           V  YT  I+   + G++  A  ++ +M K G  P+ V  + LID     G+++ A+E+  
Sbjct: 176 VVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEAYELRD 235

Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           E + +GI   I +Y+SL+ G C   K    A+EL+  ++   L   V T  A+I+ L   
Sbjct: 236 EMRAKGIFPDIYTYTSLLHGECIFGK-LDDAVELFNEVRQKGLPLNVVTYTAIISGLSKE 294

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            +  +  ++  +M   GL P+   Y+ L+ +  +
Sbjct: 295 GRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHK 328



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 17/323 (5%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPNPTL 92
           G+I E   + E+M  KG+     VY       CK     K AF  F       LV N  +
Sbjct: 15  GKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNT-KRAFALFDELTEKGLVAN--V 71

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+  L+     + + E A  ++  +Q  GL  +  +Y TLI    K G +D  F+V   
Sbjct: 72  HTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLIDEAFKVQVI 131

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G E +++T   + DG  K  Q  +A      M  K V P+ V +  LI    + G 
Sbjct: 132 MEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTLIDIYCKEGN 191

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEV 271
              A  +  EM       +P+ +T   L+   +  G   R +E Y++  +   KG  P++
Sbjct: 192 FVEAKKLFQEMKKA--GGEPNAVTYNVLIDGHSKKG---RMKEAYELRDEMRAKGIFPDI 246

Query: 272 YTIAINCCSQT--GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           YT       +   G  + A  +++++ +KG+  + V  +A+I      G+ E AF++  E
Sbjct: 247 YTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFKLYDE 306

Query: 330 AKNQGISVGIISYSSLMGACSNA 352
               G++     Y+SL+ +   A
Sbjct: 307 MTEAGLTPDDRVYTSLVSSLHKA 329



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 113/223 (50%), Gaps = 2/223 (0%)

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T   L+    ++G++D    +++ + +  IK    VYT+ IN   + G+ + A +++D++
Sbjct: 3   TYTLLIDWHGSSGKIDEVERMFEEMCEKGIKADIHVYTVVINWNCKIGNTKRAFALFDEL 62

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
           T+KG++ +     ALID    AG++EAA  ++ E + +G+ V  + Y++L+         
Sbjct: 63  TEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQLIYNTLIDGYCKRGLI 122

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +A ++   M+    +  + T+N +   L   +Q  +    L  M   G+ PN ++Y+ L
Sbjct: 123 DEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEKGVVPNVVSYTTL 182

Query: 416 L-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           + + C+  + VE    L  + K+ G  PN V +  +I   S++
Sbjct: 183 IDIYCKEGNFVEAK-KLFQEMKKAGGEPNAVTYNVLIDGHSKK 224



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 106/224 (47%), Gaps = 15/224 (6%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF--- 84
           YN LI    ++G I E   +   ME+KG  + D        +  +     +EA R+    
Sbjct: 109 YNTLIDGYCKRGLIDEAFKVQVIMEKKGF-ENDIYTLNTIADGLRKLNQPEEAKRWLLTM 167

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
               +VPN  + ++  L+ +     +   A ++ + +++AG + +   Y  LI   +K G
Sbjct: 168 IEKGVVPN--VVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKG 225

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++   +E+  EM   GI P+++TY +L+ G    G++  A   +  +R K +  + V + 
Sbjct: 226 RMKEAYELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYT 285

Query: 202 ALITACGQSGAVDRAFDVLAEMN-AEVHPVDPDHIT-IGALMKA 243
           A+I+   + G  + AF +  EM  A + P D  + + + +L KA
Sbjct: 286 AIISGLSKEGRSEEAFKLYDEMTEAGLTPDDRVYTSLVSSLHKA 329



 Score = 45.8 bits (107), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 38/150 (25%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    ++GR+ E  +L ++M  KG+                              
Sbjct: 213 TYNVLIDGHSKKGRMKEAYELRDEMRAKGIF----------------------------- 243

Query: 87  VPNPTLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
              P + T+ ++L   C   K  + A ++   V++ GL  +   YT +I+  +K G+ + 
Sbjct: 244 ---PDIYTYTSLLHGECIFGK-LDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEE 299

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
            F+++ EM  AG+ P+   Y +L+    KA
Sbjct: 300 AFKLYDEMTEAGLTPDDRVYTSLVSSLHKA 329


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 180/395 (45%), Gaps = 43/395 (10%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R F+ +P P + TFN+++       +   A  +   ++E G   D   + +LI    K G
Sbjct: 178 RLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCG 237

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++D + ++  EM  +G + +V TY ALI+   K G++  A+G +  M+ + V  + V F+
Sbjct: 238 ELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFS 297

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
             + A  + G V  A  + A+M   V  +  +  T                         
Sbjct: 298 TFVDAFCKEGLVREAMKLFAQM--RVRGMALNEFT------------------------- 330

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                     YT  I+   + G  + A  + D+M ++GV  + V  + L+D      KV 
Sbjct: 331 ----------YTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVA 380

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A ++L+  +  G+    + Y++L+      KN +KAL L   MK+  L+  +S   ALI
Sbjct: 381 EAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALI 440

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC+  +L +   +L+ M   GL PN I Y+ ++ AC +   V   + +L +  + G  
Sbjct: 441 QGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQ 500

Query: 442 PNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGR 475
           PN++ +  +I G+C     KA +++E +  FN  R
Sbjct: 501 PNVITYCALIDGLC-----KAGSIDEAISHFNKMR 530



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 148/327 (45%), Gaps = 2/327 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN L+       + +   Q++  ++ +G KAD   Y  LI    K G+++  +  
Sbjct: 221 PDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGY 280

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M   G+  NV T+   +D   K G V +A   +  MR + +  +   +  LI    +
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +D A  +L EM  +  P++   +T   L+       +V  A +V +M+ K  ++   
Sbjct: 341 AGRLDDAIVLLDEMVRQGVPLNV--VTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +YT  I+      + E A  +  +M  KG+  D     ALI    +  K++ A  +L +
Sbjct: 399 LLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTK 458

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+    I Y+++M AC  +    +A+ + + +     +P V T  ALI  LC    
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
           + + +   + M+ LGL PN   Y+ L+
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALV 545



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 193/454 (42%), Gaps = 44/454 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI    + G + E   L+E+M R G       Y+A     CK  + ++ A+ +F  
Sbjct: 225 TFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGR-METAYGYFAA 283

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +        + TF+  +           A ++   ++  G+  +   YT LI    K+G+
Sbjct: 284 MKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D    +  EMV  G+  NV TY  L+DG  K  +VA+A     +M    V+ + +++  
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 203 LITACGQSGAVDRAFDVLAEMNAE------------------VHPVD------------- 231
           LI     +   ++A  +L+EM  +                  VH +D             
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
             P++I    +M AC  +G+V  A  + + I     +     Y   I+   + G  + A 
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
           S ++ M   G+ P+    +AL+D     G +  A ++  E  ++G+S+  + Y++L+   
Sbjct: 524 SHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGY 583

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
               N   A  L   M    L+  +      I+  C+ + +P+  EV S+M   G+ P+ 
Sbjct: 584 LKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDR 643

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
             Y+ L+   ++  ++E  + L  Q + + V+P+
Sbjct: 644 AVYNCLISKYQKLGNLEEAISL--QDEMERVLPS 675


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 173/374 (46%), Gaps = 8/374 (2%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--DAMFE 148
           T+  +N +M V A +        +L L++E G + D   + TLI    K+G +  +   E
Sbjct: 209 TVQVYNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIE 268

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           + +E+  +G+ P++ TY  LI  C++   + +A   +  M +   +PD   +NA+I+  G
Sbjct: 269 LLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYG 328

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G   +A  +  E+ ++ +   PD +T  +L+ A A  G VD+ +E+   + +      
Sbjct: 329 RCGFSGKAEQLFKELESKGYF--PDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRD 386

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I+   + G    A  +Y DM   G  PD +  + LID  G A K+  A  ++ 
Sbjct: 387 EMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMS 446

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  N G+   + +YS+L+   + A    +A E ++ M+   ++P     + ++      D
Sbjct: 447 EMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFD 506

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMF 447
           +  K M +  +M   G+ P+   Y  +L    R++ VE    ++   +E  G+ P  +  
Sbjct: 507 EATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNPQAIAS 566

Query: 448 KCIIGMCSRRYEKA 461
             + G C   YE A
Sbjct: 567 ILVKGEC---YEDA 577



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 188/446 (42%), Gaps = 41/446 (9%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMS 100
           I+LL ++ R GL   D + +    + C  +  ++EA + F  +      P L T+N ++S
Sbjct: 267 IELLNEVRRSGLRP-DIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMIS 325

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
           V      S  A Q+ + ++  G   D   Y +L+   A+ G VD + E+ +EMV  G   
Sbjct: 326 VYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIR 385

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           +  TY  +I    K GQ   A   Y  M+     PD + +  LI + G++  +  A +V+
Sbjct: 386 DEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVM 445

Query: 221 AEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           +EM N  V P      T  AL+   A AGQ   A E +  + +  I+     Y++ ++  
Sbjct: 446 SEMLNIGVKPT---LRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVF 502

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVG 338
            +  +   A  +Y +M + G+ PD     A++   G   KVE    I+++ +   G++  
Sbjct: 503 LRFDEATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNPQ 562

Query: 339 IISYSSLMGACS-----------------NAKNWQ-------------KALELYEHMKSI 368
            I+   + G C                  +++N               +AL+L + +K  
Sbjct: 563 AIASILVKGECYEDAAGMLRLAISGSDEIDSENLLSILSSYSSSGRQAEALDLLQFLKGH 622

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSILLVACERKDDVEV 427
             K       A I  LC   QL   ++  +D +       + T Y  L+  CE  +    
Sbjct: 623 VSKSNQLVAEASIVTLCKAKQLDAALKEYNDTREFDWFTGSCTMYESLIQCCEENEFTAE 682

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGM 453
              + S  + +GV P+  +++ ++ M
Sbjct: 683 ASQIFSDMRFNGVKPSKSLYRSMVLM 708



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 159/368 (43%), Gaps = 40/368 (10%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           + ++  T++    K+ +     E+F     + ++  V  Y A++   A+ G+  K  G  
Sbjct: 175 NARMLATILAVLGKANQEALAVEIFIR-AESTVDNTVQVYNAMMGVYARTGRFNKVQGML 233

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAV--DRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            +MR +  +PD V FN LI A  ++GA+  + A ++L E+      + PD IT   L+ A
Sbjct: 234 DLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRRS--GLRPDIITYNTLISA 291

Query: 244 CANAGQVDRAREVYK----------------MIHKY---NIKGTPE-------------- 270
           C+    ++ A +V+                 MI  Y      G  E              
Sbjct: 292 CSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPD 351

Query: 271 --VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   +   ++ G+ +    + ++M + G I DE+  + +I   G  G+   A ++ +
Sbjct: 352 AVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYR 411

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + K  G +   I+Y+ L+ +   A    +A  +   M +I +KPT+ T +ALI       
Sbjct: 412 DMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAG 471

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           Q  +  E    M+  G+ P+ + YS++L    R D+    +ML  +   DG+ P+  ++ 
Sbjct: 472 QRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYREMVRDGITPDPTVYG 531

Query: 449 CIIGMCSR 456
            ++    R
Sbjct: 532 AMLRNLGR 539



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 166/380 (43%), Gaps = 10/380 (2%)

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            N     +N L+   A+S   E A  V   +   G          L+      G+++ ++ 
Sbjct: 767  NVDRKVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYV 826

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            V  E+ + G + +  +   ++D  A+   +A+A   Y  M++    P   ++  +I    
Sbjct: 827  VTQEIQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLC 886

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +   V     ++ EM  E     PD     ++++         +  ++Y+ I +  ++  
Sbjct: 887  KGKRVRDVEAMVTEM--EEAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPD 944

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             + Y   I    +    E  CS+  +M + G+ P      +LI   G    V  A E+ +
Sbjct: 945  EDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFE 1004

Query: 329  EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            E  ++G  +    Y  +M    N+ N  KA +L   MK   ++PT++TM+ L+ +     
Sbjct: 1005 ELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSYGSSG 1064

Query: 389  QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            Q  +  +VL+++K +GL  +T+ YS ++ A  +  D  VG+  L + K++G+ P+  ++ 
Sbjct: 1065 QPQEAEKVLTNLKEMGLSLSTLPYSSVIDAYLKNKDYSVGIQKLVEMKKEGLEPDHRIWT 1124

Query: 449  CIIGMCSRRYEKARTLNEHV 468
            C I        +A +L+EH 
Sbjct: 1125 CFI--------RAASLSEHT 1136



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 130/311 (41%), Gaps = 19/311 (6%)

Query: 37   RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---------IKEA-FRFFKL 86
            R   I+E   + + M+  G      +Y      +CK ++          ++EA FR    
Sbjct: 852  RVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFR---- 907

Query: 87   VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
               P LS +N ++ +     D     Q+ + ++E GL+ D   Y TLI    +  + +  
Sbjct: 908  ---PDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEG 964

Query: 147  FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
              + HEM   G+EP + TY +LI    K   V  A   +  + SK  K DR  ++ ++  
Sbjct: 965  CSLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKI 1024

Query: 207  CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
               SG   +A  +L+ M      V+P   T+  LM +  ++GQ   A +V   + +  + 
Sbjct: 1025 YRNSGNHSKAEKLLSMMKDA--GVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLS 1082

Query: 267  GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
             +   Y+  I+   +  D+        +M K+G+ PD    +  I  A  +     A  +
Sbjct: 1083 LSTLPYSSVIDAYLKNKDYSVGIQKLVEMKKEGLEPDHRIWTCFIRAASLSEHTHDAILL 1142

Query: 327  LQEAKNQGISV 337
            LQ  ++ G  +
Sbjct: 1143 LQALQDSGFDL 1153



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 95/498 (19%), Positives = 191/498 (38%), Gaps = 77/498 (15%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA---FRF 83
           +YN +I    +QG+    + L  DM+  G       Y     ++ K+ K ++ A      
Sbjct: 389 TYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEM 448

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             +   PTL T++ L+   A +     A +    ++ +G++ D   Y+ ++    +  + 
Sbjct: 449 LNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEA 508

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV-----------------AKAFG--- 183
                ++ EMV  GI P+   YGA++    +  +V                  +A     
Sbjct: 509 TKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNPQAIASIL 568

Query: 184 --------AYGIMR---SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
                   A G++R   S + + D     +++++   SG    A D+L  +    H    
Sbjct: 569 VKGECYEDAAGMLRLAISGSDEIDSENLLSILSSYSSSGRQAEALDLLQFLKG--HVSKS 626

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSV 291
           + +   A +     A Q+D A + Y    +++   G+  +Y   I CC +      A  +
Sbjct: 627 NQLVAEASIVTLCKAKQLDAALKEYNDTREFDWFTGSCTMYESLIQCCEENEFTAEASQI 686

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-SLMGACS 350
           + DM   GV P +    +++      G  E A  ++  A+ +G+    IS   +++    
Sbjct: 687 FSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLIDLAEIEGMPFDKISIDVAVIETYG 746

Query: 351 NAKNWQKALEL----------------------------YEHMKSI-------KLKPTVS 375
             K WQKA  L                            YE  +++          PTV 
Sbjct: 747 KLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASGCYEQARAVFNTMMRDGPSPTVD 806

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           ++N L+ AL    +L +   V  +++ +G   +  +  ++L A  R  ++     +    
Sbjct: 807 SINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGM 866

Query: 436 KEDGVIPNLVMFKCIIGM 453
           K  G  P + +++ +IG+
Sbjct: 867 KAAGYFPTMHLYRIMIGL 884


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 199/433 (45%), Gaps = 9/433 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 347 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 405

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              TFN+L+   A+    + A  +   +++ G+K D   Y T+I    + GK+D   E F
Sbjct: 406 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 465

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           ++M++ G+ P+ + Y  LI G    G + KA      + +  +  D V F+++I    + 
Sbjct: 466 NQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 525

Query: 211 GAVDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           G V  A ++    +N  +HP   D +    LM      G++++A  V+  +    I+   
Sbjct: 526 GRVMDAQNIFDLTVNVGLHP---DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 582

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   +N   + G  +   S++ +M ++G+ P  +  S +ID    AG+   A     E
Sbjct: 583 VVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHE 642

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI++ I +Y+ ++      + + +A+ L++ ++++ +K  + T+N +I  +    +
Sbjct: 643 MTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRR 702

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++ + +    L PN +TYSI++    ++  VE    + S  +  G  PN  +   
Sbjct: 703 VEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNH 762

Query: 450 IIGMCSRRYEKAR 462
           ++    ++ E  R
Sbjct: 763 VVRELLKKNEIVR 775



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 194/442 (43%), Gaps = 25/442 (5%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +L+ D       +  A     C+S  A+  A  F +
Sbjct: 51  VREGTLRPEEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVAL-FNR 109

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ +  +   L+   
Sbjct: 110 AASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGF 169

Query: 138 AKSGKVDAMFEV-FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--K 194
            ++ + D   ++  H     G  P+V +Y  L+      G+  +A     +M        
Sbjct: 170 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS 229

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ V +N +I    + G V++A D+  EM     P  PD +T  +++ A   A  +D+A 
Sbjct: 230 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP--PDLVTYNSVVHALCKARAMDKAE 287

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
              + +    +      Y   I   S TG W+ A  V+ +M +  ++PD V LS L+   
Sbjct: 288 AFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSL 347

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              GK++ A ++      +G +  + SY+ ++   +         +L++ M    + P  
Sbjct: 348 CKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDF 407

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  +   +Q
Sbjct: 408 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQ 467

Query: 435 AKEDGVIPNLVMFKCII-GMCS 455
             + GV P+   + C+I G C+
Sbjct: 468 MIDQGVAPDKYAYNCLIQGFCT 489



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 167/399 (41%), Gaps = 35/399 (8%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           V +P +  +N ++       D   A  + + + + G+  D   Y +++    K+  +D  
Sbjct: 227 VCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 286

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
                +MVN  + PN  TY  LI G +  GQ  +A   +  MR  ++ PD V  + L+ +
Sbjct: 287 EAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGS 346

Query: 207 CGQSGAVDRAFDVLAEM-----NAEVHP----------------------------VDPD 233
             + G +  A DV   M     N +V                              + PD
Sbjct: 347 LCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 406

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T   L+KA AN G +D+A  ++  +  + +K     Y   I    + G  + A   ++
Sbjct: 407 FYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 466

Query: 294 DMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            M  +GV PD+   + LI  F  H G +  A E++ E  N G+ + I+ +SS++      
Sbjct: 467 QMIDQGVAPDKYAYNCLIQGFCTH-GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 525

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
                A  +++   ++ L P     + L+   C   ++ K + V   M S G+ PN + Y
Sbjct: 526 GRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 585

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             L+    +   ++ GL L  +  + G+ P+ +++  II
Sbjct: 586 CTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 624



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 161/341 (47%), Gaps = 11/341 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + P  HTY  L+D C +A +   A   +G +    ++ + ++ N L+    ++   D A 
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIA 275
           D+L     E+  V PD  +   L+K+  + G+  +A ++ +M+ +     +P V  Y   
Sbjct: 180 DILLHRTPELGCV-PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTV 238

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+   + GD   AC ++ +M ++G+ PD V  ++++     A  ++ A   L++  N+ +
Sbjct: 239 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 298

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
                +Y++L+   S+   W++A+ +++ M+   + P V T++ L+ +LC   ++ +  +
Sbjct: 299 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 358

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           V   M   G  P+  +Y+I+L     K  +     L      DG+ P+   F  +I    
Sbjct: 359 VFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLI---- 414

Query: 456 RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 496
           + Y     L++ ++ FN    ++ +      ++ YR  I A
Sbjct: 415 KAYANCGMLDKAMIIFN----EMRDHGVKPDVVTYRTVIAA 451



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/189 (17%), Positives = 88/189 (46%), Gaps = 3/189 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTF 95
           GRI E + L  +M ++G+     +Y      + ++ + +    +F ++  +     + T+
Sbjct: 596 GRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTY 655

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N+++     ++  + A  + + ++   +K +     T+I    ++ +V+   ++F  +  
Sbjct: 656 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISR 715

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           + + PNV TY  +I    K G V +A   +  M++   +P+  + N ++    +   + R
Sbjct: 716 SRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVR 775

Query: 216 AFDVLAEMN 224
           A   L++++
Sbjct: 776 AGAYLSKID 784


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 165/345 (47%), Gaps = 2/345 (0%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K V +  ++T+ ML+   + S   E A ++   + + G++ D  +YT++I    K G + 
Sbjct: 255 KNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMK 314

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
             F +F EM    + PN +TYGALI+G  KAG++  A      M+SK V  +RV+FN L+
Sbjct: 315 RAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLM 374

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G +D A  +   M  +   +D    T   +      + + + A+ +   + +  
Sbjct: 375 DGYCKKGMIDEALRLQNIMQQKGFEIDA--FTCNIIASGFCRSNRREEAKRLLLTMEERG 432

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +      ++I I+   +  ++  A  ++  M KKG  P  V  +A I+     GK+E A+
Sbjct: 433 VAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAY 492

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +++ E + +G+     +Y+SL+     + N  +ALEL+  M  + L   V T   +I+ L
Sbjct: 493 KLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGL 552

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
               +  +  ++  +M   G+ P+   YS L+ +  +   +  GL
Sbjct: 553 SKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPLVSGL 597



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 193/421 (45%), Gaps = 5/421 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPT 91
           L R G +  C++ L  M   G+      + A    +CK  + ++      +LV     P+
Sbjct: 167 LKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPS 226

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+N L++     KD  G  ++L L+++  +  +   YT LI   ++S K++   ++F 
Sbjct: 227 VITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFD 286

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM+  GIEP+V+ Y ++I+   K G + +AF  +  M  + + P+   + ALI    ++G
Sbjct: 287 EMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAG 346

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +  A  ++ +M ++   VD + +    LM      G +D A  +  ++ +   +     
Sbjct: 347 EMKAAEMMVNDMQSK--GVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFT 404

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
             I  +   ++   E A  +   M ++GV P+ V  S LID          A  + +  +
Sbjct: 405 CNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVME 464

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G +  +++Y++ +         ++A +L   M+   L P   T  +LI        + 
Sbjct: 465 KKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVD 524

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + +E+ ++M  LGL  N +TY++++    +    +    L  +  ++G++P+  ++  +I
Sbjct: 525 RALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLI 584

Query: 452 G 452
            
Sbjct: 585 A 585



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 106/477 (22%), Positives = 217/477 (45%), Gaps = 31/477 (6%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           +ML  V   ++  + + +V    ++ G + D +     +    +SG ++   E   +MV+
Sbjct: 126 DMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMVD 185

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           +GIE  V ++ A++DG  K G+V +A      +  K  KP  + +N L+    +   V  
Sbjct: 186 SGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVGG 245

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
             ++L+ M   V  VD +  T   L++  + + +++ A +++  + K  I+    +YT  
Sbjct: 246 VNEILSLMEKNV--VDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSI 303

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           IN   + G+ + A  ++D+MT++ ++P+     ALI+ A  AG+++AA  ++ + +++G+
Sbjct: 304 INWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGV 363

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
            V  + +++LM          +AL L   M+    +    T N + +  C  ++  +   
Sbjct: 364 DVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKR 423

Query: 396 VLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           +L  M+  G+ PN +++SIL+ + C+ ++  E    L    ++ G  P++V +   I   
Sbjct: 424 LLLTMEERGVAPNVVSFSILIDIYCKEQNFAE-ARRLFKVMEKKGKAPSVVTYNAFI--- 479

Query: 455 SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 514
             RY K   + E                   A  +  E    G +P     + ++   + 
Sbjct: 480 -ERYCKKGKMEE-------------------AYKLINEMQERGLMPDTYTYTSLIDGERA 519

Query: 515 PYNADIRERL---VENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 568
             N D    L   +  LG++ + +  + + S +   G  D  AF L +E    GIVP
Sbjct: 520 SGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRAD-EAFKLYDEMNKEGIVP 575



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 147/346 (42%), Gaps = 50/346 (14%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +Y  LI    R  +I E   L ++M +KG+     +Y +     CK    +K A
Sbjct: 258 VDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGN-MKRA 316

Query: 81  FRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           F  F      +LVPN    T+  L++    + + + A  ++  +Q  G+  +  ++ TL+
Sbjct: 317 FVLFDEMTERRLVPNAY--TYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLM 374

Query: 135 TTCAKSGKVDAM-----------FEV------------------------FHEMVNAGIE 159
               K G +D             FE+                           M   G+ 
Sbjct: 375 DGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVA 434

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           PNV ++  LID   K    A+A   + +M  K   P  V +NA I    + G ++ A+ +
Sbjct: 435 PNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKL 494

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           + EM  +   + PD  T  +L+     +G VDRA E++  + +  +      YT+ I+  
Sbjct: 495 INEM--QERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGL 552

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           S+ G  + A  +YD+M K+G++PD+   S+LI      G + +  E
Sbjct: 553 SKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPLVSGLE 598


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 180/386 (46%), Gaps = 7/386 (1%)

Query: 80  AFRFFKLVPNPTLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           AFR   +     L  F+   ++  +C + + +  A Q+L+ ++E  ++ +   Y+T+I  
Sbjct: 146 AFRLDLMAKGYPLDEFSYGSLINGLCKNGQ-TRDALQLLQKMEEDLVRPNLITYSTVIDG 204

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K   +     +F  + + GI  +V  Y +LI GC   GQ  +A     +M   N+ PD
Sbjct: 205 LCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPD 264

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
              FN L+ A  + G +  A  V A M        PD +T  ALM+    +  V  ARE+
Sbjct: 265 DYTFNILVDALCKEGRIVEAQGVFAVMMKRGE--KPDIVTYNALMEGFCLSNNVSEAREL 322

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  + K  ++     Y + IN   +    + A  ++ ++  K ++P+    ++LID    
Sbjct: 323 FNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCK 382

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G++    E++ E  ++G S  I++Y+  + A   +K ++KA+ L+  +    + P    
Sbjct: 383 LGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYM 441

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            + ++   C G++L    E L  +   G CPN  TY+I++ A  +    +  + LLS+  
Sbjct: 442 YDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMD 501

Query: 437 EDGVIPNLVMFKCIIGMCSRRYEKAR 462
           ++   P+ V F+ IIG    R E  +
Sbjct: 502 DNDCPPDAVTFETIIGALQERNETDK 527



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 165/415 (39%), Gaps = 10/415 (2%)

Query: 64  HARFFNVCKSQK------AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           H RFF      K       +    R  +  P P +  F+ L+           A  +   
Sbjct: 21  HVRFFGHLHPPKFHTVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQ 80

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +   G+       T LI        +   F +   ++  G +PN+ T+  LI+G    G 
Sbjct: 81  LHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGM 140

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           V+KA      + +K    D   + +LI    ++G    A  +L +M  ++  V P+ IT 
Sbjct: 141 VSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDL--VRPNLITY 198

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             ++        +  A  ++ ++    I      Y   I+ C   G W  A  +   M +
Sbjct: 199 STVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVR 258

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
             + PD+   + L+D     G++  A  +      +G    I++Y++LM     + N  +
Sbjct: 259 GNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSE 318

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A EL+  M    L+P V   N LI   C  D + + M +  +++   L PN  TY+ L+ 
Sbjct: 319 ARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLID 378

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLS 470
              +   +     L+ +  + G  P++V +   +   C S+ YEKA +L   ++ 
Sbjct: 379 GLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ 433



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 162/362 (44%), Gaps = 3/362 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+++T  +L++          AF +L  + + G + +   + TLI     +G V      
Sbjct: 88  PSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAF 147

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +++  G   +  +YG+LI+G  K GQ   A      M    V+P+ + ++ +I    +
Sbjct: 148 RLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCK 207

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +  A  + + + +    VD   +   +L+  C + GQ   A  +  M+ + NI    
Sbjct: 208 DRLIADALRLFSLVTSRGILVDV--VAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDD 265

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             + I ++   + G    A  V+  M K+G  PD V  +AL++    +  V  A E+   
Sbjct: 266 YTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNR 325

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G+   +++Y+ L+          +A+ L++ ++   L P ++T N+LI  LC   +
Sbjct: 326 MVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGR 385

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +    E++ +M   G  P+ +TY+I L A  +    E  + L  Q  + G+ P+  M+  
Sbjct: 386 MSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYMYDV 444

Query: 450 II 451
           I+
Sbjct: 445 IV 446



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 176/420 (41%), Gaps = 14/420 (3%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK 85
           ++N LI      G +S+ +    D+  KG   +D+  +    N +CK+ +  ++A +  +
Sbjct: 127 TFNTLINGFCINGMVSKAMAFRLDLMAKGY-PLDEFSYGSLINGLCKNGQT-RDALQLLQ 184

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P L T++ ++      +    A ++  LV   G+  D   Y +LI  C   G
Sbjct: 185 KMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVG 244

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +      +   MV   I P+ +T+  L+D   K G++ +A G + +M  +  KPD V +N
Sbjct: 245 QWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYN 304

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           AL+     S  V  A ++   M      ++PD +    L+        VD A  ++K I 
Sbjct: 305 ALMEGFCLSNNVSEARELFNRMVKR--GLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIR 362

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
             N+      Y   I+   + G       + D+M  +G  PD V  +  +D    +   E
Sbjct: 363 CKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYE 422

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  + ++   QGI      Y  ++      +  + A E  +H+      P V T   +I
Sbjct: 423 KAISLFRQIV-QGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMI 481

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            ALC      + M +LS M      P+ +T+  ++ A + +++ +    L  +  E G++
Sbjct: 482 NALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLV 541



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 29/227 (12%)

Query: 22  AHDVSEQLHSYNRLIRQG-------------------RISECIDLLEDMERKGLLDMDKV 62
           +++VSE    +NR++++G                    + E + L +++  K L+     
Sbjct: 313 SNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLAT 372

Query: 63  YHARFFNVCK------SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
           Y++    +CK       Q+ + E     +   +P + T+N+ +     SK  E A  + R
Sbjct: 373 YNSLIDGLCKLGRMSCVQELVDEMCDRGQ---SPDIVTYNIFLDAFCKSKPYEKAISLFR 429

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
            + + G+  D  +Y  ++    K  K+    E    ++  G  PNV TY  +I+   K  
Sbjct: 430 QIVQ-GIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDC 488

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
              +A      M   +  PD V F  +I A  +    D+A  +  EM
Sbjct: 489 SFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRLEM 535


>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 841

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 180/380 (47%), Gaps = 5/380 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++  +N ++   A ++  E +F   + VQ++G K D + Y  LIT+    G     FE++
Sbjct: 252 SVYAYNRVIQHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIY 311

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M  A    +  TY  +I   AK+G++  AF  +  M+ + ++P   +F++L+ + G+S
Sbjct: 312 ESMQAAQCSLDASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKS 371

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +D +  +  EM      +        +L+++   AG++D A  ++  + K   +    
Sbjct: 372 GRLDTSMKIYMEMQG--FGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYG 429

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           +YT+ I   +++G  + A S++ DM K G +P     S L++    +G+V++A ++    
Sbjct: 430 LYTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSM 489

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            N G+  G+ +Y++L+   ++ K    A ++   MK++     VS  + L+  + DG  +
Sbjct: 490 TNAGLKPGLSTYTALLTLLASKKLVDVAAKILLEMKAMGFSVDVSASDVLMVYIKDGS-V 548

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              +  LS M S G+  N      L  +C +K   E    LL          +L+++  I
Sbjct: 549 DLALRWLSFMGSSGIRTNNFIIRQLFESCMKKGLYESAKPLLETYVNSAAKVDLILYTSI 608

Query: 451 IGMCSRRYEKARTLNEHVLS 470
           +    R  E+      H++S
Sbjct: 609 LANLVRCQEEQH--ERHLMS 626



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 170/402 (42%), Gaps = 46/402 (11%)

Query: 107 DSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN----AGIEPN 161
           D++G   + +  + +     D + Y  L     K    D +  +F EMV      GI  +
Sbjct: 194 DADGMLSLFKWAKRQTWYVVDDECYALLFDGLNKIRDFDGIQSLFDEMVQDSSKGGIS-S 252

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT---------------- 205
           V+ Y  +I   AKA ++  +F  +  ++    K D   +NALIT                
Sbjct: 253 VYAYNRVIQHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYE 312

Query: 206 -------------------ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
                              +  +SG +D AF +  EM      + P      +L+ +   
Sbjct: 313 SMQAAQCSLDASTYELMIPSLAKSGRLDVAFKLFQEMKER--KIRPSFGIFSSLVDSMGK 370

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           +G++D + ++Y  +  + ++ +  +Y   I   ++ G  + A  ++D+M K G  P+   
Sbjct: 371 SGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGL 430

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            + +I+    +GK++ A  I ++    G      +YS L+   + +     A++LY  M 
Sbjct: 431 YTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSMT 490

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +  LKP +ST  AL+T L     +    ++L +MK++G   +     +L+V   +   V+
Sbjct: 491 NAGLKPGLSTYTALLTLLASKKLVDVAAKILLEMKAMGFSVDVSASDVLMVYI-KDGSVD 549

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNE 466
           + L  LS     G+  N  + + +   C ++  YE A+ L E
Sbjct: 550 LALRWLSFMGSSGIRTNNFIIRQLFESCMKKGLYESAKPLLE 591



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 118/280 (42%), Gaps = 6/280 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L + GR+     L ++M+ + +     ++ +   ++ KS +       + ++      S+
Sbjct: 333 LAKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSS 392

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
            +M +S+  S   +      LRL  E   AG + +  LYT +I + AKSGK+D    +F 
Sbjct: 393 ASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFK 452

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M  AG  P   TY  L++  A +GQV  A   Y  M +  +KP    + AL+T      
Sbjct: 453 DMDKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSMTNAGLKPGLSTYTALLTLLASKK 512

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            VD A  +L EM A    VD   ++   ++      G VD A      +    I+    +
Sbjct: 513 LVDVAAKILLEMKAMGFSVD---VSASDVLMVYIKDGSVDLALRWLSFMGSSGIRTNNFI 569

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
                  C + G +E A  + +         D +  ++++
Sbjct: 570 IRQLFESCMKKGLYESAKPLLETYVNSAAKVDLILYTSIL 609


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 194/425 (45%), Gaps = 9/425 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL-- 92
           L+R+  I E  DL   M  +G+       H      C  +  ++EA  +F+      +  
Sbjct: 195 LVRRNMIGELRDLYNKMVLRGIYGDHFTVHV-MVRACLKEGRVEEAEEYFRETKERGVKL 253

Query: 93  --STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               +++++       +S    ++L  ++E G       +T++I  C   G +     + 
Sbjct: 254 DAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLK 313

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM+N G   N+    +L+ G    G +  A   +  +    + P++V ++ LI  C  S
Sbjct: 314 EEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNS 373

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +++A ++  +M  +++ + P    + +L++    A   + A +++       +     
Sbjct: 374 GNIEKASELYTQM--KLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANI-F 430

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y I ++   + G  + ACS+ D+M  +G++P+ V  + +I      G ++ A  +  + 
Sbjct: 431 TYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDM 490

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             + +   +++YS L+       + +KAL+L++ M S+ + PT  T N +I  LC   Q+
Sbjct: 491 LARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQM 550

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            +  + L +    G  P+ +TY+ ++    ++ +++  L +  +  E GV PN+V +  +
Sbjct: 551 SEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSL 610

Query: 451 I-GMC 454
           I G C
Sbjct: 611 INGFC 615



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 174/379 (45%), Gaps = 6/379 (1%)

Query: 94  TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           T+N++MS +C   K  E    +  +V + G+  +   Y  +I    + G +D    VF +
Sbjct: 431 TYNIMMSWLCKGGKMDEACSLLDNMVNQ-GMVPNVVSYNDMILGHCRKGNMDMASSVFSD 489

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+   ++PNV TY  LIDG  K G   KA   +  M S N+ P    FN +I    + G 
Sbjct: 490 MLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQ 549

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +  A D L     E     P  +T  +++      G +D A  VY+ + ++ +      Y
Sbjct: 550 MSEARDKLKNFLEE--GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTY 607

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  IN   ++   + A    D+M +KG+  D    SALID       +E+A ++  E   
Sbjct: 608 TSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLE 667

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+S   I Y+S++    +  N + AL  Y+ M + ++   + T   LI  L    +L  
Sbjct: 668 VGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVF 727

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             ++  +M S G+ P+ IT+ +L+     K  +E    +L +     + P+++++  +I 
Sbjct: 728 ASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIA 787

Query: 453 MCSRR--YEKARTLNEHVL 469
              R    ++A TL++ +L
Sbjct: 788 GYFREGNLKEAFTLHDEML 806



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 169/367 (46%), Gaps = 11/367 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARF---FNVCKSQKAIKEAFRF 83
           SYN +I    R+G +     +  DM  + L      Y       F    S+KA+    + 
Sbjct: 466 SYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQM 525

Query: 84  FKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             L   PT  TFN +++ +C   + SE   ++   ++E G    C  Y +++    K G 
Sbjct: 526 LSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE-GFIPSCMTYNSIVDGFIKEGN 584

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D+   V+ EM   G+ PNV TY +LI+G  K+ ++  A      MR K ++ D   ++A
Sbjct: 585 IDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSA 644

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    +   ++ A D+  E+  EV  + P+ I   +++    +   ++ A   YK +  
Sbjct: 645 LIDGFCKRRDMESAQDLFFEL-LEVG-LSPNRIVYNSMISGFRDLNNMEAALVWYKKMIN 702

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I      YT  I+   + G   FA  +Y +M  KG++PD +    L++   + G++E 
Sbjct: 703 DRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLEN 762

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A +IL+E   + ++  ++ Y++L+       N ++A  L++ M    L P   T + LI 
Sbjct: 763 ARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILIN 822

Query: 383 ALCDGDQ 389
               GD+
Sbjct: 823 GKFKGDR 829



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 171/347 (49%), Gaps = 15/347 (4%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+T   +   +  + +++++MV  GI  +  T   ++  C K G+V +A   +   + + 
Sbjct: 191 LLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERG 250

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC-ANAGQVD 251
           VK D   ++ +I A  +    +   ++L EM        P   T  +++ AC A    V+
Sbjct: 251 VKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWV--PSEATFTSVIVACVAQGNMVE 308

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINC----CSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
             R   +MI+     G P    +A +     C+Q G+ + A ++++ +T+ G+ P++V  
Sbjct: 309 ALRLKEEMIN----CGKPMNLVVATSLMKGYCAQ-GNLDSALNLFNKITEDGLFPNKVTY 363

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           S LI+   ++G +E A E+  + K  GI   + + +SL+     A  W++A +L++    
Sbjct: 364 SVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVD 423

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             +   + T N +++ LC G ++ +   +L +M + G+ PN ++Y+ +++   RK ++++
Sbjct: 424 CGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDM 482

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFN 472
              + S      + PN+V +  +I    ++   EKA  L + +LS N
Sbjct: 483 ASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLN 529



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/395 (19%), Positives = 151/395 (38%), Gaps = 62/395 (15%)

Query: 78  KEAFRFFKLVPNPT-----LSTFNMLMSVCASSKDSEG-AFQVLRLVQEAGLKADCKLYT 131
           + A R+FK           +  + +L+ +   S ++ G A ++L             ++ 
Sbjct: 75  QSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGHARKLLNRYVSGDSDPSPVVFV 134

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
             +  CAK    +    VF+ ++NA I               +A ++  A   +  M  +
Sbjct: 135 DHLINCAKRFDFELDHRVFNYLLNAYI---------------RANRIENAIDCFNAMICQ 179

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           +V P     N L+TA  +   +    D+  +M   +  +  DH T+  +++AC   G+V+
Sbjct: 180 DVIPWVPYMNILLTALVRRNMIGELRDLYNKM--VLRGIYGDHFTVHVMVRACLKEGRVE 237

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A E ++   +  +K     Y+I I    +  +                           
Sbjct: 238 EAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLG----------------------- 274

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                        E+L+E K +G      +++S++ AC    N  +AL L E M +    
Sbjct: 275 ------------LELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKP 322

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
             +    +L+   C    L   + + + +   GL PN +TYS+L+  C    ++E    L
Sbjct: 323 MNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASEL 382

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 466
            +Q K +G+ P++     ++    R Y KA    E
Sbjct: 383 YTQMKLNGIPPSVFNVNSLL----RGYLKAPLWEE 413



 Score = 42.0 bits (97), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 106/278 (38%), Gaps = 18/278 (6%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           V +AL+       +  R F         +  VD   + +  LM++    G    AR++  
Sbjct: 63  VIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGH---ARKLLN 119

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
                +   +P V+   +  C++  D+E    V++             L+A I     A 
Sbjct: 120 RYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFN-----------YLLNAYI----RAN 164

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           ++E A +       Q +   +   + L+ A        +  +LY  M    +     T++
Sbjct: 165 RIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVH 224

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            ++ A     ++ +  E   + K  G+  +   YSI++ A  +K +  +GL LL + KE 
Sbjct: 225 VMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER 284

Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 476
           G +P+   F  +I  C  +      L       N G+P
Sbjct: 285 GWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKP 322


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 201/445 (45%), Gaps = 12/445 (2%)

Query: 18  HANYAHDVSEQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           H   AH +++Q  S    +  R+G+ S        +E KG L    V+ A   +V     
Sbjct: 118 HFLIAHRMNQQAESLLHFVVSRKGKGSASSVFASILETKGTLSSSFVFDA-LMSVYTEFG 176

Query: 76  AIKEAFRFFKLVPNPTLST-FN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            + +A + F+L     L   FN    L+           A +    + ++G   +   + 
Sbjct: 177 YVSDAIQCFRLTKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEILDSGYPPNVYTFN 236

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            L+    K GKV     +F E+   G++P   ++  LI+G  K+G + + F    +M   
Sbjct: 237 VLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEF 296

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            V PD   ++ALI    +   ++ A  +  EM      + P+ +T   L+      G+VD
Sbjct: 297 RVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDR--GLVPNDVTFTTLINGQCKNGRVD 354

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A E+Y+ +    +K    +Y   I+   + G +  A     +MTK+G+IPD+   + L+
Sbjct: 355 LALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLL 414

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKL 370
           D +   G +E A E+ +E   +GI +  +++++++ G C + K       L E +++  L
Sbjct: 415 DGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRA-GL 473

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           KP   T   ++   C    +    ++L +M+S G  P  ITY++L+    ++  V+   M
Sbjct: 474 KPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADM 533

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMC 454
           LL+     GV+P+ + +  ++ G C
Sbjct: 534 LLNAMLNLGVVPDDITYNILLQGHC 558



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 159/351 (45%), Gaps = 10/351 (2%)

Query: 70  VCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +CK  K +K+A   F    K    PT  +FN L++    S + E  F++  +++E  +  
Sbjct: 242 LCKEGK-VKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFP 300

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D   Y+ LI    K  +++    +F EM + G+ PN  T+  LI+G  K G+V  A   Y
Sbjct: 301 DVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIY 360

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M +K +K D V++N LI    + G    A   + EM      + PD  T   L+    
Sbjct: 361 QQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKR--GLIPDKFTYTTLLDGSC 418

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
             G ++ A E+ K + K  I+     +T  I+   + G    A     +M + G+ PD+ 
Sbjct: 419 KEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDG 478

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + ++D     G V+  F++L+E ++ G   G+I+Y+ LM         + A  L   M
Sbjct: 479 TYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAM 538

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            ++ + P   T N L+   C   +L     V ++M   GL  +  +Y  LL
Sbjct: 539 LNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEM---GLVSDYASYRSLL 586



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 9/200 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    + G   E    + +M ++GL+     Y       CK +  ++ A    K +
Sbjct: 375 YNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCK-EGDLELALEMRKEM 433

Query: 88  PNPTLSTFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
               +   N+  +   S    +G    A + LR +  AGLK D   YT ++    K G V
Sbjct: 434 VKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDV 493

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
              F++  EM + G  P V TY  L++G  K GQV  A      M +  V PD + +N L
Sbjct: 494 KMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNIL 553

Query: 204 ITACGQSGAVDRAFDVLAEM 223
           +    + G +    +V  EM
Sbjct: 554 LQGHCKHGKLGDFQNVKTEM 573


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/425 (20%), Positives = 194/425 (45%), Gaps = 9/425 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL-- 92
           L+R+  I E  DL   M  +G+       H      C  +  ++EA  +F+      +  
Sbjct: 235 LVRRNMIGELRDLYNKMVLRGIYGDHFTVHV-MVRACLKEGRVEEAEEYFRETKERGVKL 293

Query: 93  --STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               +++++       +S    ++L  ++E G       +T++I  C   G +     + 
Sbjct: 294 DAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLK 353

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM+N G   N+    +L+ G    G +  A   +  +    + P++V ++ LI  C  S
Sbjct: 354 EEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNS 413

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +++A ++  +M  +++ + P    + +L++    A   + A +++       +     
Sbjct: 414 GNIEKASELYTQM--KLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANI-F 470

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y I ++   + G  + ACS+ D+M  +G++P+ V  + +I      G ++ A  +  + 
Sbjct: 471 TYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDM 530

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             + +   +++YS L+       + +KAL+L++ M S+ + PT  T N +I  LC   Q+
Sbjct: 531 LARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQM 590

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            +  + L +    G  P+ +TY+ ++    ++ +++  L +  +  E GV PN+V +  +
Sbjct: 591 SEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSL 650

Query: 451 I-GMC 454
           I G C
Sbjct: 651 INGFC 655



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 174/379 (45%), Gaps = 6/379 (1%)

Query: 94  TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           T+N++MS +C   K  E    +  +V + G+  +   Y  +I    + G +D    VF +
Sbjct: 471 TYNIMMSWLCKGGKMDEACSLLDNMVNQ-GMVPNVVSYNDMILGHCRKGNMDMASSVFSD 529

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+   ++PNV TY  LIDG  K G   KA   +  M S N+ P    FN +I    + G 
Sbjct: 530 MLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQ 589

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +  A D L     E     P  +T  +++      G +D A  VY+ + ++ +      Y
Sbjct: 590 MSEARDKLKNFLEE--GFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTY 647

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  IN   ++   + A    D+M +KG+  D    SALID       +E+A ++  E   
Sbjct: 648 TSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLE 707

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+S   I Y+S++    +  N + AL  Y+ M + ++   + T   LI  L    +L  
Sbjct: 708 VGLSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVF 767

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             ++  +M S G+ P+ IT+ +L+     K  +E    +L +     + P+++++  +I 
Sbjct: 768 ASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIA 827

Query: 453 MCSRR--YEKARTLNEHVL 469
              R    ++A TL++ +L
Sbjct: 828 GYFREGNLKEAFTLHDEML 846



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 169/367 (46%), Gaps = 11/367 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARF---FNVCKSQKAIKEAFRF 83
           SYN +I    R+G +     +  DM  + L      Y       F    S+KA+    + 
Sbjct: 506 SYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQM 565

Query: 84  FKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             L   PT  TFN +++ +C   + SE   ++   ++E G    C  Y +++    K G 
Sbjct: 566 LSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE-GFIPSCMTYNSIVDGFIKEGN 624

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D+   V+ EM   G+ PNV TY +LI+G  K+ ++  A      MR K ++ D   ++A
Sbjct: 625 IDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGLELDVTAYSA 684

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    +   ++ A D+  E+  EV  + P+ I   +++    +   ++ A   YK +  
Sbjct: 685 LIDGFCKRRDMESAQDLFFEL-LEVG-LSPNRIVYNSMISGFRDLNNMEAALVWYKKMIN 742

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I      YT  I+   + G   FA  +Y +M  KG++PD +    L++   + G++E 
Sbjct: 743 DRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLCNKGQLEN 802

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A +IL+E   + ++  ++ Y++L+       N ++A  L++ M    L P   T + LI 
Sbjct: 803 ARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPDDVTYDILIN 862

Query: 383 ALCDGDQ 389
               GD+
Sbjct: 863 GKFKGDR 869



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 171/347 (49%), Gaps = 15/347 (4%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+T   +   +  + +++++MV  GI  +  T   ++  C K G+V +A   +   + + 
Sbjct: 231 LLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERG 290

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC-ANAGQVD 251
           VK D   ++ +I A  +    +   ++L EM        P   T  +++ AC A    V+
Sbjct: 291 VKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWV--PSEATFTSVIVACVAQGNMVE 348

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINC----CSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
             R   +MI+     G P    +A +     C+Q G+ + A ++++ +T+ G+ P++V  
Sbjct: 349 ALRLKEEMIN----CGKPMNLVVATSLMKGYCAQ-GNLDSALNLFNKITEDGLFPNKVTY 403

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           S LI+   ++G +E A E+  + K  GI   + + +SL+     A  W++A +L++    
Sbjct: 404 SVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVD 463

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             +   + T N +++ LC G ++ +   +L +M + G+ PN ++Y+ +++   RK ++++
Sbjct: 464 CGVA-NIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDM 522

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFN 472
              + S      + PN+V +  +I    ++   EKA  L + +LS N
Sbjct: 523 ASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLN 569



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 8/272 (2%)

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAR 254
           D  VFN L+ A  ++  ++ A D    M  + V P  P    +  L+ A      +   R
Sbjct: 189 DHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVP---YMNILLTALVRRNMIGELR 245

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           ++Y  +    I G      + +  C + G  E A   + +  ++GV  D    S +I   
Sbjct: 246 DLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAV 305

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
                     E+L+E K +G      +++S++ AC    N  +AL L E M +      +
Sbjct: 306 CKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNL 365

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
               +L+   C    L   + + + +   GL PN +TYS+L+  C    ++E    L +Q
Sbjct: 366 VVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQ 425

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 466
            K +G+ P++     ++    R Y KA    E
Sbjct: 426 MKLNGIPPSVFNVNSLL----RGYLKAPLWEE 453



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 110/281 (39%), Gaps = 24/281 (8%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           V +AL+       +  R F         +  VD   + +  LM++    G    AR   K
Sbjct: 103 VIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGH---AR---K 156

Query: 259 MIHKY---NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           ++++Y   +   +P V+   +  C++  D+E    V++             L+A I    
Sbjct: 157 LLNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFN-----------YLLNAYI---- 201

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            A ++E A +       Q +   +   + L+ A        +  +LY  M    +     
Sbjct: 202 RANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHF 261

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T++ ++ A     ++ +  E   + K  G+  +   YSI++ A  +K +  +GL LL + 
Sbjct: 262 TVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEM 321

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 476
           KE G +P+   F  +I  C  +      L       N G+P
Sbjct: 322 KERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKP 362


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/450 (23%), Positives = 203/450 (45%), Gaps = 25/450 (5%)

Query: 70  VCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +CK+ + ++ A    + +P+    P  +TF  +M       + +GA ++   + E G   
Sbjct: 213 LCKAHQ-VRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPC 271

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
                  LI    K G++D       E V+ G  P+  TY  L++G  K G    A    
Sbjct: 272 TDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVV 331

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M    + PD   +N+LI+   + G ++ A  +L +M +      P+ +T  A++ +  
Sbjct: 332 DAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVS--RDCSPNAVTYNAIISSLC 389

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPD 303
              +VD A E+ +++    I   P+V T    I     + + + A  ++++M  KG  PD
Sbjct: 390 KENRVDEATEIARLLTSKGI--LPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPD 447

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 362
           E   + LID    + K+E A  +L+E +  G +  ++ Y++L+ G C N K  ++A E++
Sbjct: 448 EFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKN-KRIEEAEEIF 506

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           + M+   +     T N LI  LC   ++    +++  M   GL P+  TY+ LL    + 
Sbjct: 507 DEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKT 566

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-------SRRYEKARTLNEHVLSFNSG 474
            D++    ++      G  P++V +  +I G+C       + R  ++  +   VL+ ++ 
Sbjct: 567 GDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAY 626

Query: 475 RPQIE----NKWTSLALMVYREAIVAGTIP 500
            P I+       T  A+ ++RE +     P
Sbjct: 627 NPVIQALFKRNRTHEAMRLFREMLDKSEPP 656



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 192/444 (43%), Gaps = 22/444 (4%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           Y  G + + A  + EQ+  Y           C D+  ++   G     ++  A  F    
Sbjct: 248 YIEGGNLDGALRIKEQMVEYG--------CPCTDVTVNVLINGFCKQGRIDQALSF---- 295

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            Q+A+ E FR       P   T+N L++       ++ A +V+  +   GL  D   Y +
Sbjct: 296 IQEAVSEGFR-------PDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNS 348

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           LI+   K G+++   ++  +MV+    PN  TY A+I    K  +V +A     ++ SK 
Sbjct: 349 LISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKG 408

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + PD   FN+LI     S     A D+  EM  +     PD  T   L+ +  ++ +++ 
Sbjct: 409 ILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGK--GCRPDEFTYNMLIDSLCSSRKLEE 466

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A  + K +          +Y   I+   +    E A  ++D+M  +GV  D V  + LID
Sbjct: 467 ALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLID 526

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               + +VE A +++ +   +G+     +Y+SL+       + +KA ++ + M S    P
Sbjct: 527 GLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNP 586

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            + T   LI+ LC   ++     +L  ++  G+      Y+ ++ A  +++     + L 
Sbjct: 587 DIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLF 646

Query: 433 SQAKEDGVIPNLVMFKCII-GMCS 455
            +  +    P+ + +K +  G+C+
Sbjct: 647 REMLDKSEPPDAITYKIVYRGLCN 670



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/343 (21%), Positives = 153/343 (44%), Gaps = 5/343 (1%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  ++    K+G  + M  V  EM  +G E +   +   ++   K     +  G   +M
Sbjct: 99  VYEEILRKLGKAGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVM 158

Query: 189 RSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
             +  +KPD   +N L+     +  +       + M      +  D  T   L+KA   A
Sbjct: 159 EDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVR--RRIRHDVSTFNILIKALCKA 216

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
            QV  A  + + +  Y +      +T  +    + G+ + A  + + M + G    +V +
Sbjct: 217 HQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTV 276

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + LI+     G+++ A   +QEA ++G      +Y++L+       + + A+E+ + M  
Sbjct: 277 NVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLL 336

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             L P + T N+LI+ LC   ++ + +++L  M S    PN +TY+ ++ +  +++ V+ 
Sbjct: 337 GGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDE 396

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV 468
              +       G++P++  F  +I G+C S  ++ A  L E +
Sbjct: 397 ATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEM 439


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 127/535 (23%), Positives = 224/535 (41%), Gaps = 73/535 (13%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----------KLV 87
           +G++ +  +LL  M  +     +  Y      +CK+ + ++EA R F             
Sbjct: 225 RGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGR-VEEAVRLFGDRELPSSSSSSS 283

Query: 88  PNPTLSTFNM-LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             P+L  +N+ ++ +C + +  E A Q+   + E  +  D   Y  LI   AK+GK++  
Sbjct: 284 SPPSLRGYNIVILGLCQNDRIDE-AVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDA 342

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +F +++++G+ P+   Y +LI G   A     A   +  M  +   P  V +N +I A
Sbjct: 343 RNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDA 402

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G ++ A D++ +M  + H   PD +T   +M     + +V+ A  ++  + +    
Sbjct: 403 SCKRGMLEEACDLIKKMIEDGHV--PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCT 460

Query: 267 GTPEVY-TIAINCCSQT--------GDWEFACSVYDDMTKKGVIPDEVFLSALI------ 311
                + TI +  C Q+        G  + A  +   MT  G +PD V  S LI      
Sbjct: 461 PNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSI 520

Query: 312 ---DFAGH--------------------------AGKVEAAFEILQEAKNQGISVGIISY 342
              D A H                          AG+++ A E+L    + G S  +++Y
Sbjct: 521 ARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTY 580

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           ++L+     A   ++A EL   M +  L P V T  AL++ LC  ++LP+   V + MKS
Sbjct: 581 NTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS 640

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSR 456
            G  PN  TY+ L++       V+ GL L  +    G+ P+ V++       C  G  +R
Sbjct: 641 SGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSAR 700

Query: 457 RYEKARTLNEHVLSFNSGRP--------QIENKWTSLALMVYREAIVAGTIPTVE 503
             E  R   E + S   G           +E     +AL   R+ +  G +P  E
Sbjct: 701 ALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPE 755



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 98/460 (21%), Positives = 185/460 (40%), Gaps = 77/460 (16%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           NV ++ +A+K  F   +   +P    +N+L+   +  +++E   ++++++ + G   D  
Sbjct: 22  NVGRTFEAVK-IFSLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSF 80

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            +TT++    K+GK+D    V  EM +  I P   T   L       G + +AF    IM
Sbjct: 81  TFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIM 140

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV------------------ 230
              N       +N ++ A  ++  VD A ++   M+ +  P+                  
Sbjct: 141 PVANSS----AYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRI 196

Query: 231 ------------DPDHITIGALMKACANAGQVDRAREVYKMI------------------ 260
                       +P  +T+  L++   + GQVD+ARE+ + +                  
Sbjct: 197 DEALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDG 256

Query: 261 --------HKYNIKGTPEV---------------YTIAINCCSQTGDWEFACSVYDDMTK 297
                       + G  E+               Y I I    Q    + A  +++ M +
Sbjct: 257 LCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNE 316

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           + V PD      LID    AGK+  A  + Q+  + G++   ++Y+SL+     A ++  
Sbjct: 317 RNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDD 376

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A EL+  M      P+  T N +I A C    L +  +++  M   G  P+ +TY+ ++ 
Sbjct: 377 ARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMD 436

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
              +   VE  L+L ++ +  G  PN      II G+C +
Sbjct: 437 GLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQ 476


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 195/454 (42%), Gaps = 63/454 (13%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK------------DSEG 110
           +H++  +      AI    R  ++ P P+   FN L++  A  K            DS G
Sbjct: 32  FHSKSLHFNTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFG 91

Query: 111 -----------------------AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
                                  AF VL  + + G + D   +TTLI      GK+    
Sbjct: 92  IPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEAL 151

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F +M+  G  P+V TYG LI+G  K G  + A    G M  KN +P+   +N +I + 
Sbjct: 152 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIK 266
            +   V  AF++ +EM  +   + PD  T  +L+ A  N  +    + V  ++++  + K
Sbjct: 212 CKDRQVTEAFNLFSEMVTK--GISPDIFTYNSLIHALCNLCE---WKHVATLLNEMVDSK 266

Query: 267 GTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P+V  +   ++   + G    A  V D M ++GV P+ V  +AL+D      +++ A 
Sbjct: 267 IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAV 326

Query: 325 EILQEAKNQGISVGIISYSSLM-GACSNAK------------------NWQKALELYEHM 365
           ++      +G    +ISY++L+ G C   +                  N  +A+++++ M
Sbjct: 327 KVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTM 386

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
                 P V + N LI   C   ++ K M +  +M    L P+T+TYS L+      + +
Sbjct: 387 VCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERL 446

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSRRY 458
           +  + L  +      IPNLV ++ ++  +C  RY
Sbjct: 447 QDAIALFHEMVACSQIPNLVTYRILLDYLCKNRY 480



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 186/439 (42%), Gaps = 29/439 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N L + G  S  I LL  M +K        Y+    ++CK ++ + EAF  F ++V    
Sbjct: 174 NGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQ-VTEAFNLFSEMVTKGI 232

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+N L+    +  + +    +L  + ++ +  D   + T++    K GKV    +
Sbjct: 233 SPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHD 292

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  +M+  G+EPNV TY AL+DG     ++ +A   +  M  K   P+ + +N LI    
Sbjct: 293 VVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYC 352

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
           +   +D+A      M+     ++ D                     E  K+      KG 
Sbjct: 353 KIQRIDKAIHYTXLMDXXCCYLNMD---------------------EAVKVFDTMVCKGC 391

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P V  Y   IN   +    + A  ++ +M ++ +IPD V  S LI    H  +++ A  
Sbjct: 392 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIA 451

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +  E         +++Y  L+      +   +A+ L + ++   L P +   N  I  +C
Sbjct: 452 LFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMC 511

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              +L    ++ S++ S GL P+  TYSI++    R+  ++    L  +  E+G   N  
Sbjct: 512 RAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGC 571

Query: 446 MFKCIIGMCSRRYEKARTL 464
           ++  I     R  E +R +
Sbjct: 572 IYNTITRGFLRNNETSRAI 590



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 135/334 (40%), Gaps = 39/334 (11%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  L+T+ AK      +  + H+M + GI PN++T   LI+      +V  AF     + 
Sbjct: 64  FNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKIL 123

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               +PD   F  LI      G +  A  +  +M  E     PD +T G L         
Sbjct: 124 KLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGE--GFRPDVVTYGTL--------- 172

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
                                     IN   + G+   A  +   M +K   P+    + 
Sbjct: 173 --------------------------INGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNT 206

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           +ID      +V  AF +  E   +GIS  I +Y+SL+ A  N   W+    L   M   K
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSK 266

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           + P V + N ++ ALC   ++ +  +V+  M   G+ PN +TY+ L+       +++  +
Sbjct: 267 IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAV 326

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKA 461
            +       G +PN++ +  +I G C  +R +KA
Sbjct: 327 KVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKA 360



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 158/365 (43%), Gaps = 24/365 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L ++G+++E  D+++ M ++G+      Y A     C   + + EA + F  +      P
Sbjct: 281 LCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSE-MDEAVKVFDTMVCKGCMP 339

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + ++N L++         G  ++ R+ +          YT L+        +D   +VF
Sbjct: 340 NVISYNTLIN---------GYCKIQRIDKAIH-------YTXLMDXXCCYLNMDEAVKVF 383

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             MV  G  PNV +Y  LI+G  K  ++ KA   +G M  + + PD V ++ LI      
Sbjct: 384 DTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHV 443

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             +  A  +  EM A      P+ +T   L+        +  A  + K I   N+    +
Sbjct: 444 ERLQDAIALFHEMVACSQI--PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQ 501

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           V  IAI+   + G+ E A  ++ +++ KG+ PD    S +I+     G ++ A ++ +E 
Sbjct: 502 VNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREM 561

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
              G ++    Y+++           +A++L + M +       STM   +  L D D L
Sbjct: 562 DENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSD-DGL 620

Query: 391 PKTME 395
            ++++
Sbjct: 621 DQSLK 625



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 96/214 (44%), Gaps = 7/214 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN LI    +  RI + + L  +M R+ L+     Y      +C  ++       F ++
Sbjct: 397 SYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEM 456

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V     P L T+ +L+     ++    A  +L+ ++ + L  D ++    I    ++G++
Sbjct: 457 VACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGEL 516

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +A  ++F  + + G++P+V TY  +I+G  + G + +A   +  M       +  ++N +
Sbjct: 517 EAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTI 576

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
                ++    RA  +L EM A     D   +T+
Sbjct: 577 TRGFLRNNETSRAIQLLQEMVARGFSADASTMTL 610


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 174/377 (46%), Gaps = 13/377 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL----YTTLITTCAKSGKVDAMFEV 149
           T N L+     ++    A+Q+ R   +  L   C      Y TLI    K+G ++  F++
Sbjct: 71  TCNCLLRTLVKARRHHQAYQIFR---DELLGQHCDTNHITYNTLIGGFCKAGDMERAFQL 127

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G  P+V T+ +++      G +++A   +    S    PD V+FN L+    +
Sbjct: 128 LAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYF--RESVECAPDSVLFNILVHGLCK 185

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  +  A  ++ EM+     + PD +T  +L+     + +++ AR++ + + K  ++   
Sbjct: 186 ANQLSEARQMIEEMSER--GIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNL 243

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I    +TG    A  + + M + G  PD V  ++LI       K++ A E+L  
Sbjct: 244 VTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHL 303

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K    +  +++Y+ L+    +A    +A EL   M    + P + T N+LI   C   Q
Sbjct: 304 MKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQ 363

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++ + M   G+ P+ I+Y  L VA  + +  +    LL    + G IPNL  F  
Sbjct: 364 IEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNS 423

Query: 450 II-GM-CSRRYEKARTL 464
           ++ G+ CSRR ++AR L
Sbjct: 424 LMEGLCCSRRLDEARHL 440



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 192/433 (44%), Gaps = 31/433 (7%)

Query: 16  GKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           G+H +  H       +YN LI    + G +     LL +M+ +G    D V H+      
Sbjct: 98  GQHCDTNHI------TYNTLIGGFCKAGDMERAFQLLAEMKERGH-SPDVVTHSSIVQAL 150

Query: 72  KSQKAIKEAFRFFK----LVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKAD 126
            +   +  A ++F+      P+  L  FN+L+  +C +++ SE A Q++  + E G+  D
Sbjct: 151 CNTGNLSRAMQYFRESVECAPDSVL--FNILVHGLCKANQLSE-ARQMIEEMSERGIVPD 207

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y +LI    KS +++   ++   MV   + PN+ TY  LI G  K G    A     
Sbjct: 208 VVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIE 267

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M      PD V FN+LI+   Q   +D+A +VL  M   +    P+ +T   L+    +
Sbjct: 268 RMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGL--CAPNLVTYNVLISGLCD 325

Query: 247 AGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVI 301
           AG   RA E  +++ + + +G  P++ T    I I C  +    E A  + + M ++GVI
Sbjct: 326 AG---RANEACELLSEMDGRGILPDIITYNSLIGIFC--RNFQIEQAFQIQNLMVERGVI 380

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD +    L      + + + AF +L    + G    + +++SLM     ++   +A  L
Sbjct: 381 PDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHL 440

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
              M+ +   P  ST   L+T LC   ++    EVL  M S G+ P   +   ++    R
Sbjct: 441 LAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAR 500

Query: 422 KDDVEVGLMLLSQ 434
           +   ++ L    Q
Sbjct: 501 EGKQDLALHYFDQ 513



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 166/352 (47%), Gaps = 10/352 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T + ++    ++ +   A Q  R   E     D  L+  L+    K+ ++    +
Sbjct: 137 SPDVVTHSSIVQALCNTGNLSRAMQYFRESVECA--PDSVLFNILVHGLCKANQLSEARQ 194

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM   GI P+V TY +LIDG  K+ ++ +A      M  + V+P+ V +N LI    
Sbjct: 195 MIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYC 254

Query: 209 QSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
           ++G    A  ++  M  +  HP   D +T  +L+       ++D+A EV  ++ K     
Sbjct: 255 KTGCTGLAHQLIERMIQSGTHP---DVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAP 311

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y + I+     G    AC +  +M  +G++PD +  ++LI       ++E AF+I 
Sbjct: 312 NLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQ 371

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                +G+    ISY +L  A   ++ + +A  L ++M      P + T N+L+  LC  
Sbjct: 372 NLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCS 431

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE--RKDDV-EVGLMLLSQA 435
            +L +   +L+ M+ +G  P   TY +L+   C+  R DD  EV +M++S+ 
Sbjct: 432 RRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEG 483



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 162/364 (44%), Gaps = 18/364 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L +  ++SE   ++E+M  +G++     Y++    +CKS + ++EA +  + +      P
Sbjct: 183 LCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYR-MEEARQLLETMVKRKVRP 241

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L T+N L+     +  +  A Q++  + ++G   D   + +LI+   +  K+D   EV 
Sbjct: 242 NLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVL 301

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           H M      PN+ TY  LI G   AG+  +A      M  + + PD + +N+LI    ++
Sbjct: 302 HLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRN 361

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             +++AF +   M      V PD I+   L  A   + + D A  +  + + ++    P 
Sbjct: 362 FQIEQAFQIQNLMVER--GVIPDGISYCTLAVALLKSERFDEAFAL--LDNMFDAGAIPN 417

Query: 271 VYT----IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           ++T    +   CCS+  D   A  +   M + G  P       L+     AG+V+ A E+
Sbjct: 418 LFTFNSLMEGLCCSRRLDE--ARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEV 475

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK---PTVSTMNALITA 383
           L    ++GI   + S  +++   +       AL  ++ + + + K   P+   +   +  
Sbjct: 476 LVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPSYQKLLEFVKV 535

Query: 384 LCDG 387
           L +G
Sbjct: 536 LREG 539



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 122/305 (40%), Gaps = 40/305 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRF 83
           +YN LI    +  R+ E   LLE M ++ +      Y+   +  CK+     A +   R 
Sbjct: 210 TYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERM 269

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +   +P + TFN L+S        + A +VL L+++     +   Y  LI+    +G+ 
Sbjct: 270 IQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRA 329

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +   E+  EM   GI P++ TY +LI    +  Q+ +AF    +M  + V PD + +  L
Sbjct: 330 NEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTL 389

Query: 204 ITACGQSGAVDRAFDVLAEM-NAEVHP--------------------------------V 230
             A  +S   D AF +L  M +A   P                                 
Sbjct: 390 AVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGC 449

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
           DP   T   L+     AG+VD A+EV  M+    I+         ++  ++ G  + A  
Sbjct: 450 DPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALH 509

Query: 291 VYDDM 295
            +D +
Sbjct: 510 YFDQV 514


>gi|299471432|emb|CBN79384.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 172/409 (42%), Gaps = 37/409 (9%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFF-----NVCKSQKAIKEAFRFFKLVPNPTL 92
           +G +   + LLE M   G+    + Y A         + +  +   E  R   L P+   
Sbjct: 181 KGDLRRAVVLLEIMREDGIDPDQRSYSAAIATAGIRGLWEEVQGFLETMREEDLTPDTV- 239

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            TFN  +   A +   + AF +L  ++  GL  D   Y  ++  C  +G+  A   +  +
Sbjct: 240 -TFNTAIKAVADNGQCDVAFSLLAEMKNEGLTPDQISYNGVLGACGNAGEWKAALRLLED 298

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M  AG+ PN + Y A +D C KAG+  +A    G MR   V+ D   +NA I AC  +  
Sbjct: 299 MRQAGVTPNAYNYSAAMDACGKAGRQREALALLGHMRKAGVRADTACYNAAIDACSVAMD 358

Query: 213 VDRAFDVLAEMN-------------------AEVHPVDPDHITIGALMKACANAGQVDRA 253
              A  +L EM                     EV P  PD ++  + + ACA A +VD  
Sbjct: 359 WTAAVQLLQEMKLGVAGAASGGAPGGGGTAGVEVAP-PPDVVSYASAITACARARRVD-- 415

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            E   ++ +  +         A +             + D+M   G+ P+++    ++  
Sbjct: 416 -EALGLLSELRVNEAQAAAAAAGDVACGA-------ELLDEMIAAGLRPNKIHCDTMVAA 467

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               GK E A  +++  ++ G    + +Y +++   +   NW  A+    ++  + L+P+
Sbjct: 468 WSAEGKPERAVALMRRLQSHGFEPSLYTYETIVWGFAKEANWAAAVRFLAYVLGLGLQPS 527

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           V + +A I A        + + +L+DM+  G+ P+ +TY+  +V   R+
Sbjct: 528 VRSWDAAIAACSQAGHWERALALLADMRKQGIRPSKVTYTAAVVGINRR 576



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 167/383 (43%), Gaps = 32/383 (8%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P   T+N + +  A   D+  A +VL+++ EAG+  +   Y + +  C   G +     
Sbjct: 130 HPDQFTYNAVANAAAKRGDAVAAAEVLKMMAEAGVTPNIITYNSCLAACKAKGDLRRAVV 189

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M   GI+P+  +Y A I      G   +  G    MR +++ PD V FN  I A  
Sbjct: 190 LLEIMREDGIDPDQRSYSAAIATAGIRGLWEEVQGFLETMREEDLTPDTVTFNTAIKAVA 249

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            +G  D AF +LAEM  E   + PD I+   ++ AC NAG+   A  + + + +  +   
Sbjct: 250 DNGQCDVAFSLLAEMKNE--GLTPDQISYNGVLGACGNAGEWKAALRLLEDMRQAGVTPN 307

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+ A++ C + G    A ++   M K GV  D    +A ID    A    AA ++LQ
Sbjct: 308 AYNYSAAMDACGKAGRQREALALLGHMRKAGVRADTACYNAAIDACSVAMDWTAAVQLLQ 367

Query: 329 EAK----------------NQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSI 368
           E K                  G+ V     ++SY+S + AC+ A+   +AL L   ++  
Sbjct: 368 EMKLGVAGAASGGAPGGGGTAGVEVAPPPDVVSYASAITACARARRVDEALGLLSELR-- 425

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
                   +N    A      +    E+L +M + GL PN I    ++ A   +   E  
Sbjct: 426 --------VNEAQAAAAAAGDVACGAELLDEMIAAGLRPNKIHCDTMVAAWSAEGKPERA 477

Query: 429 LMLLSQAKEDGVIPNLVMFKCII 451
           + L+ + +  G  P+L  ++ I+
Sbjct: 478 VALMRRLQSHGFEPSLYTYETIV 500



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 155/335 (46%), Gaps = 15/335 (4%)

Query: 113 QVLRLVQE---AGLKADCKLYTTLITTCAKSGK---VDAMFEVFHEMVNAGIEPNVHTYG 166
           +V  LV E    G++ +  +Y T I   A+ G+    +A+  V  E  +  I P+  +Y 
Sbjct: 40  EVAALVSEMGGKGVEGNVYIYNTAIAAMARCGRPREAEALLTVMLERDS--IAPDTISYN 97

Query: 167 ALIDGCAKAGQVAKAFGAYGIMR-----SKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
           + I+G A+ G +  A    G M         + PD+  +NA+  A  + G    A +VL 
Sbjct: 98  SAINGHARCGDLDAARRLLGRMTELASGGALLHPDQFTYNAVANAAAKRGDAVAAAEVL- 156

Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
           +M AE   V P+ IT  + + AC   G + RA  + +++ +  I      Y+ AI     
Sbjct: 157 KMMAEAG-VTPNIITYNSCLAACKAKGDLRRAVVLLEIMREDGIDPDQRSYSAAIATAGI 215

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
            G WE      + M ++ + PD V  +  I      G+ + AF +L E KN+G++   IS
Sbjct: 216 RGLWEEVQGFLETMREEDLTPDTVTFNTAIKAVADNGQCDVAFSLLAEMKNEGLTPDQIS 275

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           Y+ ++GAC NA  W+ AL L E M+   + P     +A + A     +  + + +L  M+
Sbjct: 276 YNGVLGACGNAGEWKAALRLLEDMRQAGVTPNAYNYSAAMDACGKAGRQREALALLGHMR 335

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
             G+  +T  Y+  + AC    D    + LL + K
Sbjct: 336 KAGVRADTACYNAAIDACSVAMDWTAAVQLLQEMK 370



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 142/334 (42%), Gaps = 8/334 (2%)

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
           K Y  LI      G    +  +  EM   G+E NV+ Y   I   A+ G+  +A     +
Sbjct: 23  KDYLHLIKAAGFRGNWREVAALVSEMGGKGVEGNVYIYNTAIAAMARCGRPREAEALLTV 82

Query: 188 MRSKN-VKPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
           M  ++ + PD + +N+ I     CG   A  R    + E+ +    + PD  T  A+  A
Sbjct: 83  MLERDSIAPDTISYNSAINGHARCGDLDAARRLLGRMTELASGGALLHPDQFTYNAVANA 142

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            A  G    A EV KM+ +  +  TP +  Y   +  C   GD   A  + + M + G+ 
Sbjct: 143 AAKRGDAVAAAEVLKMMAEAGV--TPNIITYNSCLAACKAKGDLRRAVVLLEIMREDGID 200

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD+   SA I  AG  G  E     L+  + + ++   +++++ + A ++      A  L
Sbjct: 201 PDQRSYSAAIATAGIRGLWEEVQGFLETMREEDLTPDTVTFNTAIKAVADNGQCDVAFSL 260

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
              MK+  L P   + N ++ A  +  +    + +L DM+  G+ PN   YS  + AC +
Sbjct: 261 LAEMKNEGLTPDQISYNGVLGACGNAGEWKAALRLLEDMRQAGVTPNAYNYSAAMDACGK 320

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
                  L LL   ++ GV  +   +   I  CS
Sbjct: 321 AGRQREALALLGHMRKAGVRADTACYNAAIDACS 354


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 197/420 (46%), Gaps = 11/420 (2%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK----SQKAIKEAFRFFKLVPNPTLS 93
           +G++ + ++L + M R G    D + +    N  +    +++A++   R    + +    
Sbjct: 22  EGKVMDALELFDKMTRSGF-QGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFF 80

Query: 94  TFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           T+ +++ S+C      +G  ++ R +   G+  +  +Y++LI    + GK+     +F E
Sbjct: 81  TYGLVIDSLCKDGLAIKG-LKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDE 139

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           MV+ GI+ NV TY +LI    + G   +A   +  M  + + PD V F  LI    + G 
Sbjct: 140 MVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGK 199

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V  A+ +   M  +     P+ +T  +L+       Q+D A  +++++ +  IK     Y
Sbjct: 200 VQEAYKIFELMIKQGEA--PNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISY 257

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              IN    +G  E A +++  M  + + P     + L+      G++  A E+    + 
Sbjct: 258 NTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQI 317

Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            G S  + +Y+ L+ G C N    ++A++++  +KSIK KP++   + LI  +    +  
Sbjct: 318 CGQSPSLDTYTVLLDGLCKNG-CIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWE 376

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             ME+  ++ ++GL PN +TY+I++    ++  +     L  Q +E G   + + F  II
Sbjct: 377 SAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFII 436



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 178/383 (46%), Gaps = 15/383 (3%)

Query: 69  NVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGL 123
           ++CK   AIK   + F+ + N    P +  ++ L++ +C   K  E       +V + G+
Sbjct: 88  SLCKDGLAIK-GLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQ-GI 145

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
           KA+   Y +LI    + G        F +MV  GI P+V T+  LID  +K G+V +A+ 
Sbjct: 146 KANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYK 205

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGAL 240
            + +M  +   P+ V +N+L+        +D   R F+V+ E   ++     D I+   L
Sbjct: 206 IFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKI-----DVISYNTL 260

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           +     +G+ + A  +++ +    +  +   YTI +    Q G    A  ++++M   G 
Sbjct: 261 INGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQ 320

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            P     + L+D     G +E A ++ +  K+      I  YS L+G    A+ W+ A+E
Sbjct: 321 SPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAME 380

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           +++ + ++ L P + T N +I  LC   +L +   +   M+  G   + I+++ ++    
Sbjct: 381 IFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFL 440

Query: 421 RKDDVEVGLMLLSQAKEDGVIPN 443
           +++ V+  +  L + +E    PN
Sbjct: 441 QENQVQKAMEFLKRMREKNFSPN 463



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 169/401 (42%), Gaps = 26/401 (6%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           ++G + +    +TL+      GKV    E+F +M  +G + ++  YG LI+   K  Q  
Sbjct: 2   KSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQAR 61

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           +A   +  M S+    +   +  +I +  + G   +   +  EM      + P+ I   +
Sbjct: 62  RAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMIN--MGICPNVIVYSS 119

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+      G++  A  ++  +    IK     Y   I+   + G W+ A   +  M  +G
Sbjct: 120 LINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEG 179

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           ++PD V  + LID     GKV+ A++I +    QG +  I++Y+SL+           A+
Sbjct: 180 ILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAV 239

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            L+E M    +K  V + N LI   C   +  + M +   M+   L P+  TY+ILL A 
Sbjct: 240 RLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKAL 299

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS----- 473
            +   +     L +  +  G  P+L  +  ++ G+C     K   + E +  F S     
Sbjct: 300 YQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLC-----KNGCIEEAIDVFRSLKSIK 354

Query: 474 GRPQIE------------NKWTSLALMVYREAIVAGTIPTV 502
            +P I              +W S A+ ++ E    G +P +
Sbjct: 355 YKPSIRIYSILIGGMFQARRWES-AMEIFDEIPTVGLVPNI 394



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 179/376 (47%), Gaps = 8/376 (2%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P L T + L+  +C   K  + A ++   +  +G + D  LY  LI    K+ +     E
Sbjct: 7   PNLVTVSTLVKGMCFEGKVMD-ALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVE 65

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M++     N  TYG +ID   K G   K    +  M +  + P+ +V+++LI    
Sbjct: 66  LHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLC 125

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  A ++  EM ++   +  + IT  +L+ A    G    A   +  +    I   
Sbjct: 126 RVGKLREAVNLFDEMVSQ--GIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPD 183

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +T  I+  S+ G  + A  +++ M K+G  P+ V  ++L++      +++ A  + +
Sbjct: 184 VVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFE 243

Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
               +GI + +ISY++L+ G C++ K  ++A+ L+  M+  +L P+++T   L+ AL   
Sbjct: 244 VMVERGIKIDVISYNTLINGYCTSGKT-EEAMTLFRKMQYEELTPSITTYTILLKALYQN 302

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++    E+ ++M+  G  P+  TY++LL    +   +E  + +    K     P++ ++
Sbjct: 303 GRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIY 362

Query: 448 KCIIG--MCSRRYEKA 461
             +IG    +RR+E A
Sbjct: 363 SILIGGMFQARRWESA 378



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 156/353 (44%), Gaps = 7/353 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R G++ E ++L ++M  +G+      Y++     C+     KEA R F  +     
Sbjct: 122 NGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRF-GLWKEATRTFSQMVGEGI 180

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + TF  L+   +     + A+++  L+ + G   +   Y +L+       ++D    
Sbjct: 181 LPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVR 240

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  MV  GI+ +V +Y  LI+G   +G+  +A   +  M+ + + P    +  L+ A  
Sbjct: 241 LFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALY 300

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           Q+G +  A ++    N ++    P   T   L+      G ++ A +V++ +     K +
Sbjct: 301 QNGRIRTAKELFN--NMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPS 358

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             +Y+I I    Q   WE A  ++D++   G++P+ V  + +I+     GK+  A  +  
Sbjct: 359 IRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFV 418

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           + +  G     IS++ ++         QKA+E  + M+     P  S    L+
Sbjct: 419 QMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLV 471



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 136/320 (42%), Gaps = 35/320 (10%)

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  ++D MT+ G   D +    LI+      +   A E+ +   ++  S    +Y  ++ 
Sbjct: 28  ALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVID 87

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           +        K L+++  M ++ + P V   ++LI  LC   +L + + +  +M S G+  
Sbjct: 88  SLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKA 147

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 467
           N ITY+ L+ A  R    +      SQ   +G++P++V F               TL +H
Sbjct: 148 NVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFT--------------TLIDH 193

Query: 468 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 527
           +    S + +++  +    LM+ +     G  P +   + +L  L L +  D   RL E 
Sbjct: 194 L----SKKGKVQEAYKIFELMIKQ-----GEAPNIVTYNSLLNGLCLHHQMDHAVRLFEV 244

Query: 528 L---GVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDA 581
           +   G+  D +  +   +LI+G+   G+ +  A +L  +     + P ++   I +    
Sbjct: 245 MVERGIKIDVISYN---TLINGYCTSGKTE-EAMTLFRKMQYEELTPSITTYTILLKALY 300

Query: 582 RKLEIHTAKVSLSFQHATIC 601
           +   I TAK    F +  IC
Sbjct: 301 QNGRIRTAKE--LFNNMQIC 318


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 183/395 (46%), Gaps = 43/395 (10%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R F+ +P P + TFN+++       +   A  +   ++E G   D   + +LI    K G
Sbjct: 178 RLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCG 237

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++D + ++  EM  +G + +V TY ALI+   K G++  A+G +  M+ + V  + V F+
Sbjct: 238 ELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFS 297

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
             + A  + G V  A  + A+M                            R R +   ++
Sbjct: 298 TFVDAFCKEGLVREAMKLFAQM----------------------------RVRGM--ALN 327

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           ++        YT  I+   + G  + A  + D+M ++GV  + V  + L+D      KV 
Sbjct: 328 EFT-------YTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVA 380

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A ++L+  +  G+    + Y++L+      KN +KAL L   MK+  L+  +S   ALI
Sbjct: 381 EAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALI 440

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC+  +L +   +L+ M   GL PN I Y+ ++ AC +   V   + +L +  + G  
Sbjct: 441 QGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQ 500

Query: 442 PNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGR 475
           PN++ +  +I G+C     KA +++E +  FN  R
Sbjct: 501 PNVITYCALIDGLC-----KAGSIDEAISHFNKMR 530



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 148/327 (45%), Gaps = 2/327 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TFN L+       + +   Q++  ++ +G KAD   Y  LI    K G+++  +  
Sbjct: 221 PDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGY 280

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M   G+  NV T+   +D   K G V +A   +  MR + +  +   +  LI    +
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +D A  +L EM  +  P++   +T   L+       +V  A +V +M+ K  ++   
Sbjct: 341 AGRLDDAIVLLDEMVRQGVPLNV--VTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +YT  I+      + E A  +  +M  KG+  D     ALI    +  K++ A  +L +
Sbjct: 399 LLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTK 458

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+    I Y+++M AC  +    +A+ + + +     +P V T  ALI  LC    
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
           + + +   + M+ LGL PN   Y+ L+
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALV 545



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 192/454 (42%), Gaps = 44/454 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI    + G + E   L+E+M R G       Y+A     CK  + ++ A+ +F  
Sbjct: 225 TFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGR-METAYGYFAA 283

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +        + TF+  +           A ++   ++  G+  +   YT LI    K+G+
Sbjct: 284 MKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR 343

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D    +  EMV  G+  NV TY  L+DG  K  +VA+A     +M    V+ + +++  
Sbjct: 344 LDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 203 LITACGQSGAVDRAFDVLAEMN------------------AEVHPVD------------- 231
           LI     +   ++A  +L+EM                     VH +D             
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
             P++I    +M AC  +G+V  A  + + I     +     Y   I+   + G  + A 
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAI 523

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
           S ++ M   G+ P+    +AL+D     G +  A ++  E  ++G+S+  + Y++L+   
Sbjct: 524 SHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGY 583

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
               N   A  L   M    L+  +      I+  C+ + +P+  EV S+M   G+ P+ 
Sbjct: 584 LKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDR 643

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
             Y+ L+   ++  ++E  + L  Q + + V+P+
Sbjct: 644 AVYNCLISKYQKLGNLEEAISL--QDEMERVLPS 675


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 196/435 (45%), Gaps = 11/435 (2%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  ++S N LI    R   +   + +L  M + G+      ++A    +C   K IKEA
Sbjct: 124 VTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGK-IKEA 182

Query: 81  FRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F    K    P + ++  +++    + ++  A  V + +++ G K +   Y+T+I +
Sbjct: 183 VELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDS 242

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K   V+   E   EMV  GI PNV TY +++ G    GQ+ +A   +  M  ++V P+
Sbjct: 243 LCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPN 302

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V F  L+    + G V  A  V   M  +   V+PD  T  ALM        ++ A++V
Sbjct: 303 TVTFTILVDGLCKEGMVSEARLVFETMTEK--GVEPDISTYNALMDGYCLQRLMNEAKKV 360

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           ++++ +         Y I IN   ++   + A S+  +M  K + PD V  S L+     
Sbjct: 361 FEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQ 420

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G+ + A  + +E  + G    +++Y  L+       +  +AL+L + MK  KL+P +  
Sbjct: 421 LGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVH 480

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
              LI  +    +L    E+ S +   G  P+  TY++++    ++   +    L  + +
Sbjct: 481 YTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKME 540

Query: 437 EDGVIPNLVMFKCII 451
           +DG +PN   +  +I
Sbjct: 541 DDGFLPNSCSYNVMI 555



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 139/333 (41%), Gaps = 22/333 (6%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD     F+ MV     P+V  +G  +   AK  Q +        M    V  +    N 
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 203 LITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           LI    +   VD +  VL +M    +HP   D IT  AL+    N G++  A E++  + 
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHP---DAITFNALINGLCNEGKIKEAVELFNEMV 190

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K   +     YT  IN   +TG+   A  V+  M + G  P+ V  S +ID       V 
Sbjct: 191 KRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVN 250

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E L E   +GI   + +Y+S++    N     +A  L++ M    + P   T   L+
Sbjct: 251 DAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILV 310

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKE--- 437
             LC    + +   V   M   G+ P+  TY+ L+   C ++        L+++AK+   
Sbjct: 311 DGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQR--------LMNEAKKVFE 362

Query: 438 ----DGVIPNLVMFKCII-GMC-SRRYEKARTL 464
                G  P    +  +I G C SRR ++A++L
Sbjct: 363 IMIRKGCAPGAHSYNILINGYCKSRRMDEAKSL 395



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/422 (21%), Positives = 162/422 (38%), Gaps = 74/422 (17%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           NVC    A+   +R  ++ P P++  F   +          G+F            A  K
Sbjct: 71  NVC-VDDALASFYRMVRINPRPSVVEFGKFL----------GSF------------AKKK 107

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            Y+T+++ C    ++D +F V H         NV++   LI+   +   V  +    G M
Sbjct: 108 QYSTVVSLC---NQMD-LFRVTH---------NVYSLNILINCLCRLNHVDFSVSVLGKM 154

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               + PD + FNALI      G +  A ++  EM    H  +P+ I+   ++      G
Sbjct: 155 FKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGH--EPNVISYTTVINGLCKTG 212

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ--------------------------- 281
               A +V+K + +   K     Y+  I+   +                           
Sbjct: 213 NTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYN 272

Query: 282 --------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
                    G    A  ++ +M  + V+P+ V  + L+D     G V  A  + +    +
Sbjct: 273 SIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEK 332

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+   I +Y++LM      +   +A +++E M      P   + N LI   C   ++ + 
Sbjct: 333 GVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEA 392

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
             +L++M    L P+T+TYS L+    +    +  L L  +    G  PNLV +  ++ G
Sbjct: 393 KSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDG 452

Query: 453 MC 454
            C
Sbjct: 453 FC 454



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 9/202 (4%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           HSYN LI    +  R+ E   LL +M  K L      Y      +C+  +  KEA   FK
Sbjct: 374 HSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRP-KEALNLFK 432

Query: 86  LV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +    P+P L T+ +L+         + A ++L+ ++E  L+ +   YT LI     +G
Sbjct: 433 EMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAG 492

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K++   E+F ++   G  P++ TY  +I G  K G   +A+  +  M      P+   +N
Sbjct: 493 KLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYN 552

Query: 202 ALITACGQSGAVDRAFDVLAEM 223
            +I    Q+     A  ++ EM
Sbjct: 553 VMIQGFLQNQDSSTAIRLIDEM 574


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 202/427 (47%), Gaps = 21/427 (4%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           FKL    +L++ N L+S      ++     V + + +  ++ +   +   I    K+GK+
Sbjct: 161 FKL----SLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKL 216

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR---SKNVKPDRVVF 200
           +   +V  ++   G  PN+ TY  LIDG  K G   K + A  I++   +  + P+ + F
Sbjct: 217 NKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITF 276

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N LI    +   V  A +   EM  +   + P+ +T  +L+   +N G++D A  ++  +
Sbjct: 277 NTLIDGFCKDENVLAAKNAFEEM--QRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKM 334

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               +K     +   IN   +    + A  ++DD+ ++ ++P+ +  + +ID    AG +
Sbjct: 335 VGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMM 394

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E  F +     ++GI   + +Y+ L+      +N + A +L   M++ +LK  V T N L
Sbjct: 395 EEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNIL 454

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I   C   +  K  ++L +M ++G+ PN +TY+ L+     + +++  L + +Q +++G 
Sbjct: 455 IGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGK 514

Query: 441 IPNLVMFKCII-GMC-SRRYEKA-RTLNEHV-LSFNSGRPQIENKWTSLALMVYREAIVA 496
             N+V +  +I G C + + E A R LNE +    N  R   +        +V  E +  
Sbjct: 515 RANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYD--------VVRLEMLEK 566

Query: 497 GTIPTVE 503
           G IP +E
Sbjct: 567 GFIPDIE 573



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 163/391 (41%), Gaps = 47/391 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--------QKAIKEAFRFF 84
           N L + G++++  D++ED++  G       Y+      CK           AI +     
Sbjct: 208 NGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLAN 267

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K+ PN    TFN L+      ++   A      +Q  GLK +   Y +LI   + +GK+D
Sbjct: 268 KICPNEI--TFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLD 325

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               ++ +MV  G++PN+ T+ ALI+G  K   + +A   +  +  +++ P+ + FN +I
Sbjct: 326 EAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMI 385

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            A  ++G ++  F +   M  E   + P+  T   L+        V  A+++   +  Y 
Sbjct: 386 DAFCKAGMMEEGFALHNSMLDE--GIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE 443

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +K     Y I I    + G+   A  +  +M   GV P+ V  + L+D     G ++AA 
Sbjct: 444 LKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAAL 503

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++  + + +G    +++Y                                   N LI   
Sbjct: 504 KVRTQMEKEGKRANVVTY-----------------------------------NVLIKGF 528

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           C   +L     +L++M   GL PN  TY ++
Sbjct: 529 CKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 141/327 (43%), Gaps = 38/327 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L  F  L+S   S   +E A+QVL  +   G   D  LYT+LI     +G+V     V
Sbjct: 536 PGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHV 595

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M+  G  P+  TYG +I   +K G V  A     +M    V PD   +N+L+    +
Sbjct: 596 FDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVK 655

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGT 268
              VD+AF V   M A    + P+ +T   LM      G+ DRA  ++K M+ K  +  T
Sbjct: 656 LERVDQAFGVYDRMVA--SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPT 713

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YTI                                   LID  G AG+V  AF   Q
Sbjct: 714 LVSYTI-----------------------------------LIDGLGKAGRVSEAFSQFQ 738

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  ++GI     +Y+SL+ + + A    +A +L E M  + + P V   +ALIT L D  
Sbjct: 739 EMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSS 798

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +    +V  +M   G  PN +TY +L
Sbjct: 799 MVDTAWDVFQEMMKRGCAPNEVTYKVL 825



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 194/462 (41%), Gaps = 43/462 (9%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  +I+      RI E  +L E ++  G       Y A    + K+ + I++  + F+ 
Sbjct: 365 SYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGR-IEDGLKNFED 423

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      PT +T+ +++     ++    A +V   + + G   D   YTTLI   +K+ K
Sbjct: 424 MSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASK 483

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D   ++   M+  G EP   TYG+++ G  K   + +A      MR +  +P   +F +
Sbjct: 484 MDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTS 543

Query: 203 LITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVD------ 231
           L++     G  + A+ VL EM A                           H  D      
Sbjct: 544 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 603

Query: 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
             PD +T G +++  +  G V+ A E+ +++ K  +      Y   ++   +    + A 
Sbjct: 604 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 663

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA-KNQGISVGIISYSSLMGA 348
            VYD M   G+ P+ V  + L+      GK + AF + +E  +   +   ++SY+ L+  
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDG 723

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              A    +A   ++ M    + P   T  +LI +L    ++P+  +++ DM  LG+ P+
Sbjct: 724 LGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 783

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              YS L+        V+    +  +  + G  PN V +K +
Sbjct: 784 VQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 825



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 116/526 (22%), Positives = 222/526 (42%), Gaps = 37/526 (7%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + +YN L+    R  R+ + ++L + +   G       Y      +  +Q+ ++EA  FF
Sbjct: 299 IQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQR-MEEAKAFF 357

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               +  + ++  ++   A SK  + A ++   ++ AG   +   YT +I    K+G+++
Sbjct: 358 DEALD--VISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIE 415

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              + F +M  +   P   TY  +IDG  KA  +  A   +  M  K   PD + +  LI
Sbjct: 416 DGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLI 475

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               ++  +D A  +L  M  +  P +P  +T G+++        ++ A+EV   + +  
Sbjct: 476 DGFSKASKMDEARKLLDVMLTK-GP-EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERG 533

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            +    ++T  ++     G  E A  V  +MT +G  PD +  ++LID     G+V  A 
Sbjct: 534 CEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEAR 593

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +      +G +   ++Y +++   S   N + A E+ E M    + P     N+L+   
Sbjct: 594 HVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGY 653

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPN 443
              +++ +   V   M + G+ PN +T+++L+    +    +    L  +  E D V P 
Sbjct: 654 VKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPT 713

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 503
           LV +  +I    +                +GR        S A   ++E I  G IP   
Sbjct: 714 LVSYTILIDGLGK----------------AGR-------VSEAFSQFQEMIDRGIIPECH 750

Query: 504 VVSKVLGCLQLPYNADIRERLVEN---LGVSADALKRSNLCS-LID 545
             + ++  L         ++LVE+   LGV+ D    S L + LID
Sbjct: 751 TYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLID 796



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 115/475 (24%), Positives = 204/475 (42%), Gaps = 27/475 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +   N++++    ++  + A ++   +   G +     Y T+I+  A   K+D  ++ 
Sbjct: 18  PDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKF 77

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVVFNALITACG 208
           F+ M++ G EP+V  +  LI G  KAGQ     G   + ++ K  +PD  ++ ++I    
Sbjct: 78  FNSMIDNGCEPDVIAFTTLIHGFCKAGQ--PQVGHMLLNQALKRFRPDVFLYTSVIHGYC 135

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G +D  F +L EM A      PD      L+      G+VD A E+++ + K    G 
Sbjct: 136 KAGDLDTGFKILEEMLAA--GCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGD 193

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              +   I   S  G  + AC +Y +M ++G  P      +LI     AGKV+ A EI Q
Sbjct: 194 YVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQ 253

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               + ++   ++Y+SLM            L+L   M      P + T N L+      +
Sbjct: 254 TVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRAN 313

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE----DGVIPNL 444
           +L   +E+   + S G  PN  TY+ ++        +E       +A +      VI  L
Sbjct: 314 RLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTTVIKGL 373

Query: 445 VMFKCIIGMCSRRYEKARTL--NEHVLSFN--------SGRPQIENKWTSLALMVYREAI 494
              K I   C   +EK +T   + +V+++         +GR  IE+   +   M     +
Sbjct: 374 ADSKRIDEAC-ELFEKLKTAGCSPNVVAYTAVIDGLLKAGR--IEDGLKNFEDMSGSSCV 430

Query: 495 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 549
              T  TV V+  +     LP    + E++V+  G   D +  +   +LIDGF +
Sbjct: 431 PTRTTYTV-VIDGLCKAQMLPDACKVFEQMVQK-GCVPDTITYT---TLIDGFSK 480



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 189/419 (45%), Gaps = 22/419 (5%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           + E +D L++M   GL+  D V      N +CK++K I +A   F  +P+    PT+ ++
Sbjct: 1   MEEALDCLKEMHTTGLMP-DVVNCNIVLNGLCKARK-IDKAIELFLEMPSMGCEPTIVSY 58

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N ++S  AS    + A++    + + G + D   +TTLI    K+G+     +V H ++N
Sbjct: 59  NTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQP----QVGHMLLN 114

Query: 156 AGIE---PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
             ++   P+V  Y ++I G  KAG +   F     M +    PD   +  LI    + G 
Sbjct: 115 QALKRFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGR 174

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           VD A+++   M         D++T   L++A +N G++D A E+Y+ + +   +   EV 
Sbjct: 175 VDEAYELFERMRK--SGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQ 232

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I    + G  + A  +Y  +  K V    V  ++L+D     G+V+   ++L +   
Sbjct: 233 DSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVE 292

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
                 I +Y+ L+   S A     ALEL++ + S   KP  +T   +I  L D  ++ +
Sbjct: 293 CDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEE 352

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                 +        + I+Y+ ++        ++    L  + K  G  PN+V +  +I
Sbjct: 353 AKAFFDE------ALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVI 405



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 112/546 (20%), Positives = 233/546 (42%), Gaps = 50/546 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L + GR+ E  +L E M + G L  D V          +   + EA   ++ +       
Sbjct: 169 LCKLGRVDEAYELFERMRKSGCLG-DYVTFMTLIEALSNHGKLDEACELYREMIERGYEP 227

Query: 95  F-----NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           +     +++ ++C + K  E A ++ + V    +      Y +L+    K G+VD   ++
Sbjct: 228 YLEVQDSLIFALCKAGKVDE-ANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKL 286

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +MV     P++ TY  L+ G ++A ++  A   + ++ S   KP+   +  +I     
Sbjct: 287 LLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYD 346

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +  ++ A     E          D I+   ++K  A++ ++D A E+++ +         
Sbjct: 347 AQRMEEAKAFFDEA--------LDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNV 398

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  I+   + G  E     ++DM+    +P     + +ID    A  +  A ++ ++
Sbjct: 399 VAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQ 458

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G     I+Y++L+   S A    +A +L + M +   +PT  T  +++   C  D 
Sbjct: 459 MVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDM 518

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  EV++ M+  G  P    ++ LL     K   E    +L++    G  P+++++  
Sbjct: 519 INEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTS 578

Query: 450 IIGMCSRRYEKARTLNEHVLSFNSGR-PQIENKWTSLALMVYR----EAIVAGTIPTVEV 504
           +I                 L F++GR P+  + + S   M+ +    +A+  GTI  ++ 
Sbjct: 579 LID----------------LLFSTGRVPEARHVFDS---MIEKGCAPDALTYGTI--IQN 617

Query: 505 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAA 562
            SK+     +    +I E + ++ GV  D    +   SL+DG+ + +   +AF + +   
Sbjct: 618 FSKI---GNVEAAGEILELMAKS-GVGPDCFAYN---SLMDGYVKLERVDQAFGVYDRMV 670

Query: 563 SFGIVP 568
           + GI P
Sbjct: 671 ASGIKP 676



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 105/468 (22%), Positives = 196/468 (41%), Gaps = 11/468 (2%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E A   L+ +   GL  D      ++    K+ K+D   E+F EM + G EP + +Y  +
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I G A   ++ +A+  +  M     +PD + F  LI    ++G       +L   N  + 
Sbjct: 62  ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLL---NQALK 118

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
              PD     +++     AG +D   ++ + +           Y + I+   + G  + A
Sbjct: 119 RFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEA 178

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             +++ M K G + D V    LI+   + GK++ A E+ +E   +G    +    SL+ A
Sbjct: 179 YELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFA 238

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              A    +A E+Y+ + + K+  +    N+L+   C   ++   +++L  M      P+
Sbjct: 239 LCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPD 298

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNE 466
             TY+IL+    R + ++  L L       G  PN   +  II G+  ++R E+A+   +
Sbjct: 299 IQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFD 358

Query: 467 HVLSFNSGRPQI----ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE 522
             L   S    I    ++K    A  ++ +   AG  P V   + V+  L      +   
Sbjct: 359 EALDVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGL 418

Query: 523 RLVENLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVP 568
           +  E++  S+    R+    +IDG    +  P A  + E+    G VP
Sbjct: 419 KNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVP 466



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 4/147 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+      L ++M  K  +    V +    +       + EAF  F+ + +    P
Sbjct: 688 LFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIP 747

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+  L+   A +     A +++  + + G+  D + Y+ LIT    S  VD  ++VF
Sbjct: 748 ECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVF 807

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQ 177
            EM+  G  PN  TY  L  G   AG+
Sbjct: 808 QEMMKRGCAPNEVTYKVLRRGFRAAGR 834


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 201/460 (43%), Gaps = 52/460 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +STFN+L+     +     A  ++  +++ GL  D K +TT++    + G +D    V
Sbjct: 193 PDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRV 252

Query: 150 FHEMVNAG---------------------------IE---------PNVHTYGALIDGCA 173
             +MV AG                           IE         P+ +T+  L++G +
Sbjct: 253 KEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLS 312

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           K G V  A     +M  +   PD   +N+LI+   + G VD A  VL +M        P+
Sbjct: 313 KTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIE--RDCSPN 370

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +T   ++       QV+ A ++  ++    I      Y   I     + +   A  +Y 
Sbjct: 371 TVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYK 430

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 352
           +M  KG  PDE   + LID     GK++ A  +L+E +  G +  +I+Y++L+ G C N 
Sbjct: 431 EMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKN- 489

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           K   +A E+++ M+   +     T N LI  LC  +++ +  +++  M   GL P+  TY
Sbjct: 490 KRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTY 549

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV-- 468
           + LL    +  D++    ++     DG  P++V +  +I G+C + R E A  L   +  
Sbjct: 550 NSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQM 609

Query: 469 ----LSFNSGRPQIE----NKWTSLALMVYREAIVAGTIP 500
               L+ ++  P I+     K +  A+ ++RE I     P
Sbjct: 610 KGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAP 649



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 179/419 (42%), Gaps = 13/419 (3%)

Query: 37  RQGRISECIDLLEDME-RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPT 91
           ++GRI E +  +E+M  R+G    DK       N       +K A     ++     +P 
Sbjct: 277 KEGRIEEALRFIEEMSLREGFFP-DKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPD 335

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+N L+S      + + A +VL  + E     +   Y T+I+T  K  +V+   ++  
Sbjct: 336 IYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLAL 395

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            +   GI P+V TY +LI G   +     A   Y  M++K   PD   +N LI +    G
Sbjct: 396 VLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRG 455

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +  A ++L EM  EV     + IT   L+       ++  A E++  +    +      
Sbjct: 456 KLQEALNLLKEM--EVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVT 513

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I+   ++   E A  + D M  +G+ PD+   ++L+ +   AG ++ A +I+Q   
Sbjct: 514 YNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMA 573

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYE--HMKSIKLKPTVSTMNALITALCDGDQ 389
           + G    I++Y +L+     A   + A +L     MK I L P     N +I AL    +
Sbjct: 574 SDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTP--HAYNPVIQALFRRKR 631

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             + + +  +M      P+ +TY I+    C+    +   +  + +  E G +P    F
Sbjct: 632 SKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSF 690



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/428 (23%), Positives = 186/428 (43%), Gaps = 13/428 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-----N 89
            I +G +   + + E M   G +  +   +      CK  + I+EA RF + +       
Sbjct: 240 FIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGR-IEEALRFIEEMSLREGFF 298

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TFNML++  + +   + A +V+ ++   G   D   Y +LI+   K G+VD   +V
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKV 358

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            ++M+     PN  TY  +I    K  QV +A     ++  K + PD   +N+LI     
Sbjct: 359 LNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCL 418

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           S     A ++  EM  +     PD  T   L+ +    G++  A  + K +         
Sbjct: 419 SRNHTVAMELYKEMKTK--GCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNV 476

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I+   +      A  ++D M  +GV  + V  + LID    + +VE A +++ +
Sbjct: 477 ITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQ 536

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              +G+     +Y+SL+     A + +KA ++ + M S   +P + T   LI  LC   +
Sbjct: 537 MIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGR 596

Query: 390 LPKTMEVLS--DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           +    ++L    MK + L P+   Y+ ++ A  R+   +  + L  +  E    P+ V +
Sbjct: 597 VEAATKLLRTIQMKGINLTPH--AYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTY 654

Query: 448 KCII-GMC 454
           K +  G+C
Sbjct: 655 KIVFRGLC 662



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 173/410 (42%), Gaps = 46/410 (11%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE-MVNAGIEPNVHTYGALIDGCAKAGQV 178
           E G+ A+   Y  L+       K+  + E+ H  MV+ GI P+V T+  LI    +A Q+
Sbjct: 153 EFGVVANTHFYNFLLNVLVDGNKL-KLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQI 211

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM--------------- 223
             A      M    + PD   F  ++    + G +D A  V  +M               
Sbjct: 212 RPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVL 271

Query: 224 ----------NAEVHPVD---------PDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                        +  ++         PD  T   L+   +  G V  A EV  M+ +  
Sbjct: 272 VNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREG 331

Query: 265 IKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
               P++YT    I+   + G+ + A  V + M ++   P+ V  + +I       +VE 
Sbjct: 332 FD--PDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEE 389

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A ++      +GI   + +Y+SL+     ++N   A+ELY+ MK+    P   T N LI 
Sbjct: 390 ATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLID 449

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           +LC   +L + + +L +M+  G   N ITY+ L+    +   +     +  Q +  GV  
Sbjct: 450 SLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSR 509

Query: 443 NLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 490
           N V +  +I G+C S R E+A  L + ++     RP   +K+T  +L+ Y
Sbjct: 510 NSVTYNTLIDGLCKSERVEEASQLMDQMI-MEGLRP---DKFTYNSLLTY 555



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 115/255 (45%), Gaps = 13/255 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI     +G++ E ++LL++ME  G       Y+      CK+++ I EA   F  
Sbjct: 443 TYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKR-IAEAEEIFDQ 501

Query: 87  VPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +    +S    T+N L+     S+  E A Q++  +   GL+ D   Y +L+T   K+G 
Sbjct: 502 MELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGD 561

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +    ++   M + G EP++ TYG LI G  KAG+V  A      ++ K +      +N 
Sbjct: 562 IKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNP 621

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRARE-VYKMI 260
           +I A  +      A  +  EM  +     PD +T   + +  C   G +  A + V +M+
Sbjct: 622 VIQALFRRKRSKEAVRLFREMIEKAEA--PDAVTYKIVFRGLCQGGGPIGEAVDFVMEML 679

Query: 261 HKYNIKGTPEVYTIA 275
            +  +      Y +A
Sbjct: 680 ERGYVPEFSSFYMLA 694



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 79/414 (19%), Positives = 159/414 (38%), Gaps = 55/414 (13%)

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
           Y   +  N KP   +F  ++   G++G  D   D+L EM   +  +D D + +   +++ 
Sbjct: 77  YWASKQPNFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLV--FIESY 134

Query: 245 ANAGQVDRARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
           A+ G  +   + V  M  ++ +      Y   +N        +     + +M  +G+ PD
Sbjct: 135 ASFGLYNEILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPD 194

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
               + LI     A ++  A  +++E ++ G+     +++++M       N   A+ + E
Sbjct: 195 VSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKE 254

Query: 364 HM--------------------------------KSIKLK----PTVSTMNALITALCDG 387
            M                                + + L+    P   T N L+  L   
Sbjct: 255 QMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKT 314

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             +   +EV+  M   G  P+  TY+ L+    +  +V+  + +L+Q  E    PN V +
Sbjct: 315 GHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTY 374

Query: 448 KCIIG-MCSRRYEKARTLNEHVLSFNSGRPQI-----------ENKWTSLALMVYREAIV 495
             II  +C     +  T    VL+     P +            ++  ++A+ +Y+E   
Sbjct: 375 NTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKT 434

Query: 496 AGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENLGVSADALKRSNLCSLIDGF 547
            G  P     + ++    L +   ++E   L++ + VS  A       +LIDGF
Sbjct: 435 KGCHPDEFTYNMLID--SLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGF 486


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/471 (21%), Positives = 202/471 (42%), Gaps = 36/471 (7%)

Query: 14  PNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           P  +H ++    +  + + NRL + G+ +E +  LE M ++G    D +   +      +
Sbjct: 68  PQQQHYDFRD--THHMKALNRLCKTGKYTEALYFLEQMVKRGY-KPDVILCTKLIKGLFT 124

Query: 74  QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
            K  ++A R  +++    +P    +N ++S    S   + A +V+  ++  G   D   Y
Sbjct: 125 SKRTEKAVRVMEILEQYGDPDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTY 184

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             LI +    GK+D   +V  +++     P V TY  LI+     G +  A      M S
Sbjct: 185 NILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMS 244

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------------------------ 226
           + ++PD   +N ++    + G VDRAF+ ++ +N                          
Sbjct: 245 RGLQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPSLNLYNLLLKGLLNEGRWEAGER 304

Query: 227 ------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
                 V   +P+ +T   L+ +    G+   A +V +++ +  +      Y   I+   
Sbjct: 305 LMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFC 364

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           + G  + A    DDM   G +PD V  + ++      G+ + A  I ++ +  G      
Sbjct: 365 KEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNAS 424

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           SY+++ GA  ++ +  +AL +   M S  + P   T N+LI++LC    + + + +L DM
Sbjct: 425 SYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDM 484

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +     P  I+Y+I+L+   +   +   + +L+   ++G  PN   +  ++
Sbjct: 485 ERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLV 535



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 109/238 (45%), Gaps = 4/238 (1%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+++L+S +C   K  E A  VLR+++E GL  D   Y  LI+   K GKVD    
Sbjct: 316 PNIVTYSVLISSLCRDGKAGE-AVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIG 374

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              +M++AG  P++  Y  ++    K G+  +A   +  +      P+   +N +  A  
Sbjct: 375 FVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALW 434

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            SG   RA  ++ EM +  + VDPD IT  +L+ +    G VD A  +   + +   + T
Sbjct: 435 SSGDKIRALTMILEMLS--NGVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEWQPT 492

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
              Y I +    +      A  V   M   G  P+E   + L++  G+AG    A E+
Sbjct: 493 VISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVGYAGWRSYAVEL 550



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 44/195 (22%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           + Y+ LI    ++G++   I  ++DM   G L     Y+    ++CK  +A  EA   FK
Sbjct: 354 YCYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRA-DEALNIFK 412

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P  S++N +     SS D   A  ++  +   G+  D   Y +LI++  + G
Sbjct: 413 KLEEVGCPPNASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDG 472

Query: 142 KVDAMF-----------------------------------EVFHEMVNAGIEPNVHTYG 166
            VD                                      EV   MV+ G +PN  TY 
Sbjct: 473 MVDEAIGLLVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYT 532

Query: 167 ALIDGCAKAGQVAKA 181
            L++G   AG  + A
Sbjct: 533 LLVEGVGYAGWRSYA 547


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 202/438 (46%), Gaps = 10/438 (2%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKE 79
           D+ E+L S  RL R  ++++ IDL  DM +      ++D +++  A    + K    I  
Sbjct: 51  DLRERL-SKTRL-RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSA-IVKLKKYDVVISL 107

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             +   L     L TFN++++          A  +L  + + G + D     +L+    +
Sbjct: 108 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 167

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
             +V     +  +MV  G +P++  Y A+ID   K  +V  AF  +  +  K ++P+ V 
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT 227

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           + AL+     S     A  +L++M  +   + P+ IT  AL+ A    G+V  A+E+++ 
Sbjct: 228 YTALVNGLCNSSRWSDAARLLSDMIKK--KITPNVITYSALLDAFVKNGKVLEAKELFEE 285

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + + +I      Y+  +N        + A  ++D M  KG + D V  + LI+    A +
Sbjct: 286 MVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKR 345

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           VE   ++ +E   +G+    ++Y++L+     A +  KA E +  M    + P + T N 
Sbjct: 346 VEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNI 405

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           L+  LCD  +L K + +  DM+   +  + +TY+ ++    +   VE    L       G
Sbjct: 406 LLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 465

Query: 440 VIPNLVMFKCII-GMCSR 456
           + P++V +  ++ G+C++
Sbjct: 466 LKPDIVTYTTMMSGLCTK 483



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/434 (23%), Positives = 198/434 (45%), Gaps = 12/434 (2%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           P+P+    N       +L  Y+ +I  G+  E + +     R  L   + V +   F  C
Sbjct: 81  PFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGI-----RNDLYTFNIVINC--FCCC 133

Query: 72  -KSQKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            +   A+    +  KL   P   T   L++  C  ++ S+    V ++V E G K D   
Sbjct: 134 FQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-EIGYKPDIVA 192

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  +I +  K+ +V+  F+ F E+   GI PNV TY AL++G   + + + A      M 
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            K + P+ + ++AL+ A  ++G V  A ++  EM      +DPD +T  +L+       +
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVR--MSIDPDIVTYSSLVNGLCLHDR 310

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D A +++ ++           Y   IN   +    E    ++ +M+++G++ + V  + 
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     AG V+ A E   +    GIS  I +Y+ L+G   +    +KAL ++E M+  +
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           +   + T   +I  +C   ++ +   +   +   GL P+ +TY+ ++     K  +    
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVE 490

Query: 430 MLLSQAKEDGVIPN 443
            L ++ K++G++ N
Sbjct: 491 ALYTKMKQEGLMKN 504



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 154/341 (45%), Gaps = 4/341 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  L++   K  K D +  +  +M   GI  +++T+  +I+      QV+ A    G M 
Sbjct: 88  FNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKML 147

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               +PDRV   +L+    +   V  A  ++ +M  E+    PD +   A++ +     +
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEIG-YKPDIVAYNAIIDSLCKTKR 205

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           V+ A + +K I +  I+     YT  +N    +  W  A  +  DM KK + P+ +  SA
Sbjct: 206 VNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSA 265

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           L+D     GKV  A E+ +E     I   I++YSSL+          +A ++++ M S  
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKG 325

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
               V + N LI   C   ++   M++  +M   GL  NT+TY+ L+    +  DV+   
Sbjct: 326 CLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQ 385

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
              SQ    G+ P++  +  ++ G+C     EKA  + E +
Sbjct: 386 EFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 182/387 (47%), Gaps = 46/387 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   R+ R+S+ + L++ M   G       Y+A   ++CK+++ + +AF FFK +     
Sbjct: 163 NGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKR-VNDAFDFFKEIERKGI 221

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P + T+  L++ +C SS+ S+ A ++L  + +  +  +   Y+ L+    K+GKV    
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSD-AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E+F EMV   I+P++ TY +L++G     ++ +A   + +M SK    D V +N LI   
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            ++  V+    +  EM+     +  + +T   L++    AG VD+A+E +  +  + I  
Sbjct: 341 CKAKRVEDGMKLFREMSQ--RGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGI-- 396

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +P+++T  I                              L  L D     G++E A  I 
Sbjct: 397 SPDIWTYNI-----------------------------LLGGLCD----NGELEKALVIF 423

Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           ++ + + + + I++Y++++ G C   K  ++A  L+  +    LKP + T   +++ LC 
Sbjct: 424 EDMQKREMDLDIVTYTTVIRGMCKTGK-VEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCT 482

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYS 413
              L +   + + MK  GL  N  T S
Sbjct: 483 KGLLHEVEALYTKMKQEGLMKNDCTLS 509


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 161/362 (44%), Gaps = 5/362 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +N+L++          A  +   +++ GL+     + TLI    KS  +D  F +
Sbjct: 221 PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRL 280

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M    I P+V TY  LI G  K G++  A   +  M+ + ++P+ + F ALI    +
Sbjct: 281 KKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCR 340

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           S  +D A +   +M      V PD +    L+      G V++AR++   +    +K   
Sbjct: 341 SRRIDSAMNTYHQM--LTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDK 398

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  I+   + GD E A  +   M ++GV+ D V  +ALI      G+V  A   L+E
Sbjct: 399 ITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLRE 458

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+     +Y+ ++       N +   +L + M+    KP V T N L+  LC   Q
Sbjct: 459 MVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQ 518

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +     +L  M +LG+ P+ ITY+ILL    +    E    LL    E G+I +   +  
Sbjct: 519 MKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAED---LLKLRNEKGLIVDYAYYTS 575

Query: 450 II 451
           ++
Sbjct: 576 LV 577



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 168/387 (43%), Gaps = 15/387 (3%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCA-------SSKDSEGAFQVLRLVQEAGLKADCKL 129
           + +A + F+LV N   S F +    C        +S      +     + E G     + 
Sbjct: 169 VSDAIQCFRLVRN---SNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQY 225

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  LI    K G +     +F+E+   G+ P   ++  LI+G  K+  + + F     M 
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTME 285

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
              + PD   ++ LI    + G +D A  +  EM  +   + P+ IT  AL+     + +
Sbjct: 286 ENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEM--QQRGLRPNGITFTALIDGQCRSRR 343

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D A   Y  +    +K    +Y   +N   + GD   A  + D+M   G+ PD++  + 
Sbjct: 344 IDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTT 403

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 368
           LID     G +E+A EI +    +G+ +  +++++L+ G C + +       L E M   
Sbjct: 404 LIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLRE-MVEA 462

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            +KP  +T   +I   C    +    ++L +M+  G  P  ITY++L+    ++  ++  
Sbjct: 463 GMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNA 522

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-GMC 454
            MLL      GV P+ + +  ++ G C
Sbjct: 523 NMLLEAMLNLGVTPDDITYNILLEGHC 549



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 141/337 (41%), Gaps = 46/337 (13%)

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHP 229
           ++ G+ + A     I+ +   +    VF+AL+ A   SG V  A   F ++   N ++  
Sbjct: 129 SRKGKDSAASVFAAILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQI-- 186

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
             P H   G L+    N+         Y  I +Y      + Y I IN   + G    A 
Sbjct: 187 --PFH-GCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAK 243

Query: 290 SVYDDMTKKG-----------------------------------VIPDEVFLSALIDFA 314
            +++++ K+G                                   + PD    S LI   
Sbjct: 244 LIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGL 303

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G+++ A ++  E + +G+    I++++L+     ++    A+  Y  M ++ +KP +
Sbjct: 304 CKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDL 363

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
              N L+  LC    + K  +++ +M+ +G+ P+ ITY+ L+    ++ D+E  + +   
Sbjct: 364 VMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKG 423

Query: 435 AKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHV 468
             E+GV+ + V F  +I G C   R  +  RTL E V
Sbjct: 424 MNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMV 460


>gi|384253088|gb|EIE26563.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 908

 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 172/399 (43%), Gaps = 37/399 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSE----GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           P  +TFN L+     S+ S+     A    RL  E GL+ D   ++ L  T      +D 
Sbjct: 95  PETATFNALIRAVGRSRRSDLVGRAAAYFSRLC-ELGLQPDKYTFSALFNTAYHCKLLDG 153

Query: 146 MFEV------FHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAYGIMRSKNVKP 195
            F +        E+   G+  N       +     A     QV + F     MR++ ++P
Sbjct: 154 AFLLQASLVALSEVPYFGVRLNSRIMFTFLQSAWGAHFTREQVVRVFAEVAAMRAQ-MQP 212

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN--------- 246
           DR V+ AL+    + G  + A DV   M  +     PD     AL  ACA+         
Sbjct: 213 DRSVYAALLIFAERQGVPEHALDVWEAMQQDT--TTPDAFLFSALFSACASGRTPDLLDL 270

Query: 247 AGQVDRAREVYKMIH----KYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           AG+ +    + +  H    + N++   +    Y   +N  +++     A +VY  M + G
Sbjct: 271 AGKAEADMHMRRSSHNQGQRSNLQHKQDWLVAYNALLNLHARSRQASAAEAVYQGMLQNG 330

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
             PD + ++ LI      G  +AAFE  +E +  G+S    +Y SL+  C+   N + A 
Sbjct: 331 PKPDSISVNTLIAAHAEVGNADAAFERFREMQGMGLSTNKSTYGSLLHCCAQVGNHKSAA 390

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDG---DQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            + + M+   ++PTV    +L+ A       D L +  +V  +M+  G+ P  +TY  LL
Sbjct: 391 RVMQMMRYAGIQPTVEAYTSLMDACVKTGTPDSLSQAFQVFEEMQQEGVEPTAVTYGCLL 450

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           VACE+  DVE    L  QA E G++P       +I +C+
Sbjct: 451 VACEQLGDVERAFQLYKQACERGIVPTDECHNILINVCA 489



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 147/313 (46%), Gaps = 8/313 (2%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L  +N L+++ A S+ +  A  V + + + G K D     TLI   A+ G  DA FE F 
Sbjct: 300 LVAYNALLNLHARSRQASAAEAVYQGMLQNGPKPDSISVNTLIAAHAEVGNADAAFERFR 359

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM   G+  N  TYG+L+  CA+ G    A     +MR   ++P    + +L+ AC ++G
Sbjct: 360 EMQGMGLSTNKSTYGSLLHCCAQVGNHKSAARVMQMMRYAGIQPTVEAYTSLMDACVKTG 419

Query: 212 AVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             D   +AF V  EM  E   V+P  +T G L+ AC   G V+RA ++YK   +  I  T
Sbjct: 420 TPDSLSQAFQVFEEMQQE--GVEPTAVTYGCLLVACEQLGDVERAFQLYKQACERGIVPT 477

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEIL 327
            E + I IN C+ TG  + A  +  ++ +         L+++    A H   V  A  ++
Sbjct: 478 DECHNILINVCAATGRVDEALELVKELARSHRAMQAASLNSVARALAAH--NVARALRMV 535

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                 G+     +  +L+GAC+      +A +LY  ++   +  T S  + LI ALC  
Sbjct: 536 SFMTTLGLPTYHQTTITLIGACARQHRAAEAEDLYWGVRKRGMLVTRSAGSDLIVALCKA 595

Query: 388 DQLPKTMEVLSDM 400
               K + V  DM
Sbjct: 596 GWAGKALRVYRDM 608



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 145/402 (36%), Gaps = 73/402 (18%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           E G K D   +T  +    K G  +A+ E F           V    A I+  ++ G V 
Sbjct: 20  ELGFKQDAYCFTARVAVSGKMGNHEAVQEAFENACQHNA-CTVAVCNAAIEALSRCGDVE 78

Query: 180 KAFGAYG-IMRSKNVKPDRVVFNALITACGQSGAVD---RA---FDVLAEMNAEVHPVDP 232
            A   +   M+S  + P+   FNALI A G+S   D   RA   F  L E+      + P
Sbjct: 79  GAIALFEERMQSLGIAPETATFNALIRAVGRSRRSDLVGRAAAYFSRLCELG-----LQP 133

Query: 233 DHITIGALMKACANAGQVDRA--------------------------------------R 254
           D  T  AL     +   +D A                                      R
Sbjct: 134 DKYTFSALFNTAYHCKLLDGAFLLQASLVALSEVPYFGVRLNSRIMFTFLQSAWGAHFTR 193

Query: 255 E----VYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           E    V+  +     +  P+  VY   +    + G  E A  V++ M +    PD    S
Sbjct: 194 EQVVRVFAEVAAMRAQMQPDRSVYAALLIFAERQGVPEHALDVWEAMQQDTTTPDAFLFS 253

Query: 309 ALI---------DFAGHAGKVEAAFEILQEAKNQGISVG-------IISYSSLMGACSNA 352
           AL          D    AGK EA   + + + NQG           +++Y++L+   + +
Sbjct: 254 ALFSACASGRTPDLLDLAGKAEADMHMRRSSHNQGQRSNLQHKQDWLVAYNALLNLHARS 313

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           +    A  +Y+ M     KP   ++N LI A  +        E   +M+ +GL  N  TY
Sbjct: 314 RQASAAEAVYQGMLQNGPKPDSISVNTLIAAHAEVGNADAAFERFREMQGMGLSTNKSTY 373

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
             LL  C +  + +    ++   +  G+ P +  +  ++  C
Sbjct: 374 GSLLHCCAQVGNHKSAARVMQMMRYAGIQPTVEAYTSLMDAC 415



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 84/227 (37%), Gaps = 43/227 (18%)

Query: 76  AIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           ++ +AF+ F+ +      PT  T+  L+  C    D E AFQ+ +   E G+    + + 
Sbjct: 423 SLSQAFQVFEEMQQEGVEPTAVTYGCLLVACEQLGDVERAFQLYKQACERGIVPTDECHN 482

Query: 132 TLITTCAKSGKVDAMFEVFHE----------------------------------MVNAG 157
            LI  CA +G+VD   E+  E                                  M   G
Sbjct: 483 ILINVCAATGRVDEALELVKELARSHRAMQAASLNSVARALAAHNVARALRMVSFMTTLG 542

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           +     T   LI  CA+  + A+A   Y  +R + +   R   + LI A  ++G   +A 
Sbjct: 543 LPTYHQTTITLIGACARQHRAAEAEDLYWGVRKRGMLVTRSAGSDLIVALCKAGWAGKAL 602

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            V  +M A          + GA   A + + Q +    V    H +N
Sbjct: 603 RVYRDMMASAWGT-----STGAAKHAHSGSSQQEAEPPVQTHAHGHN 644


>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
          Length = 981

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 174/375 (46%), Gaps = 12/375 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           PT   FN L+         E A  +L  ++ +A ++       T+I    K+ + +  ++
Sbjct: 283 PTDIFFNKLIDYAFRKSQVEMAEYLLVFMRDQAKIQPTIVTINTMIDQYFKNNQREKAWK 342

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            F  +     +P+  TY  LI+G   +    +  AF  +   +  N +PD++++N L+ A
Sbjct: 343 TFENLKLTQTKPDNFTYTTLINGLKNSDNMDLKLAFSLFEEYKQYN-QPDQIIYNCLLDA 401

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           C  +G ++R F +L EM  +   +  D IT   L+K C    +++ A  +++ +    IK
Sbjct: 402 CINAGDLNRGFQLLNEM-KQSQTIQLDEITYNTLIKGCGRKKRLNDALNLFEEMKLIGIK 460

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALID--FAGHAGKVE-- 321
                +   ++ C +      A   +++M K+ G+ PD    S L++     H+ + E  
Sbjct: 461 PNRISFNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFPDNFTYSILVNGIKTNHSNRDELL 520

Query: 322 AAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            A  +L++ +  G      I Y+SL+ AC      QK +EL+  MK+ +++P+  T   L
Sbjct: 521 RAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREMKNKQIEPSSVTYGIL 580

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I A    + L    ++  +MK   +  N +TY  L+ AC R D ++  L  + Q K   +
Sbjct: 581 IKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIDQMKSQNL 640

Query: 441 IPNLVMFKCII-GMC 454
             N V++  II G C
Sbjct: 641 PINTVLYTTIIKGFC 655



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 186/414 (44%), Gaps = 16/414 (3%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAG 122
           ++F   + +KA K  F   KL    P   T+  L++   +S   D + AF +    ++  
Sbjct: 330 QYFKNNQREKAWK-TFENLKLTQTKPDNFTYTTLINGLKNSDNMDLKLAFSLFEEYKQYN 388

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKA 181
            + D  +Y  L+  C  +G ++  F++ +EM  +  I+ +  TY  LI GC +  ++  A
Sbjct: 389 -QPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGRKKRLNDA 447

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +  M+   +KP+R+ FN+L+ +C +   ++ A+    EM  + + + PD+ T   L+
Sbjct: 448 LNLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRKQ-YGIFPDNFTYSILV 506

Query: 242 KAC----ANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
                  +N  ++ RA  + + I +    K    +Y   I+ C +  + +    ++ +M 
Sbjct: 507 NGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREMK 566

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            K + P  V    LI   G    +  AF+I +E K + I +  ++Y  L+ AC       
Sbjct: 567 NKQIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDACVRNDRLD 626

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLCPNTITYSIL 415
           +AL+  + MKS  L         +I   C  +Q  + ++    MK S    PN ITY+ L
Sbjct: 627 QALQFIDQMKSQNLPINTVLYTTIIKGFCKLNQTEEAIKYFDLMKQSPKTYPNLITYNSL 686

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHV 468
           L    +   +     L  +  +  + P+L+ F  ++ G C  R    + LNE V
Sbjct: 687 LDGMVKNGLLNQADKLFQELVDSKIKPDLITFSTLLKGHC--RKGNMKRLNETV 738



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 167/396 (42%), Gaps = 43/396 (10%)

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAK 139
           F  +K    P    +N L+  C ++ D    FQ+L  + Q   ++ D   Y TLI  C +
Sbjct: 381 FEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGR 440

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRV 198
             +++    +F EM   GI+PN  ++ +L+D C K  ++  A+  +  MR +  + PD  
Sbjct: 441 KKRLNDALNLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFPDNF 500

Query: 199 VFNALI----TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
            ++ L+    T       + RA  +L ++  E     PD I   +L+ AC    ++ +  
Sbjct: 501 TYSILVNGIKTNHSNRDELLRAITLLEQI-QETGQFKPDEILYNSLIDACVKFNEIQKGM 559

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E+++ +    I+ +   Y I I    +  D   A  ++++M +K +  ++V    L+D  
Sbjct: 560 ELFREMKNKQIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDAC 619

Query: 315 GHAGKVEAAFEILQEAKNQGISVG------------------------------------ 338
               +++ A + + + K+Q + +                                     
Sbjct: 620 VRNDRLDQALQFIDQMKSQNLPINTVLYTTIIKGFCKLNQTEEAIKYFDLMKQSPKTYPN 679

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           +I+Y+SL+          +A +L++ +   K+KP + T + L+   C    + +  E + 
Sbjct: 680 LITYNSLLDGMVKNGLLNQADKLFQELVDSKIKPDLITFSTLLKGHCRKGNMKRLNETVQ 739

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            M  L + P+     ++L AC  +    +G+ +  Q
Sbjct: 740 IMTGLQISPDESLLQLILEACLNQQQYHIGVQIFDQ 775



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 142/310 (45%), Gaps = 12/310 (3%)

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           A I+P + T   +ID   K  Q  KA+  +  ++    KPD   +  LI     S  +D 
Sbjct: 315 AKIQPTIVTINTMIDQYFKNNQREKAWKTFENLKLTQTKPDNFTYTTLINGLKNSDNMDL 374

Query: 216 --AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVY 272
             AF +  E      P   D I    L+ AC NAG ++R  ++  +M     I+     Y
Sbjct: 375 KLAFSLFEEYKQYNQP---DQIIYNCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITY 431

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I  C +      A +++++M   G+ P+ +  ++L+D      K+  A+   +E + 
Sbjct: 432 NTLIKGCGRKKRLNDALNLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRK 491

Query: 333 Q-GISVGIISYSSLMGAC----SNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCD 386
           Q GI     +YS L+       SN     +A+ L E ++   + KP     N+LI A   
Sbjct: 492 QYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVK 551

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
            +++ K ME+  +MK+  + P+++TY IL+ A  +++D+     +  + K+  +  N V 
Sbjct: 552 FNEIQKGMELFREMKNKQIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVT 611

Query: 447 FKCIIGMCSR 456
           + C++  C R
Sbjct: 612 YGCLVDACVR 621



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 165/373 (44%), Gaps = 51/373 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+ R+++ ++L E+M+  G+   +++      + C     +  A+R+F+ 
Sbjct: 430 TYNTLIKGCGRKKRLNDALNLFEEMKLIGI-KPNRISFNSLLDSCVKCNKMNIAWRYFEE 488

Query: 87  VPN-----PTLSTFNMLMSVCASSKDSEG----AFQVLRLVQEAG-LKADCKLYTTLITT 136
           +       P   T+++L++   ++  +      A  +L  +QE G  K D  LY +LI  
Sbjct: 489 MRKQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDA 548

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
           C K  ++    E+F EM N  IEP+  TYG LI    K   +  AF  +  M+ K +  +
Sbjct: 549 CVKFNEIQKGMELFREMKNKQIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPIN 608

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +  L+ AC ++  +D+A   + +M ++  P++   +    ++K      Q + A + 
Sbjct: 609 DVTYGCLVDACVRNDRLDQALQFIDQMKSQNLPINT--VLYTTIIKGFCKLNQTEEAIKY 666

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           + +     +K +P+ Y                             P+ +  ++L+D    
Sbjct: 667 FDL-----MKQSPKTY-----------------------------PNLITYNSLLDGMVK 692

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G +  A ++ QE  +  I   +I++S+L+       N ++  E  + M  +++ P  S 
Sbjct: 693 NGLLNQADKLFQELVDSKIKPDLITFSTLLKGHCRKGNMKRLNETVQIMTGLQISPDESL 752

Query: 377 MNALITALCDGDQ 389
           +  ++ A  +  Q
Sbjct: 753 LQLILEACLNQQQ 765


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 188/424 (44%), Gaps = 24/424 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L RQ R      L+  +E+ GL   D V+     N       +KEA + F+ + +    P
Sbjct: 116 LTRQKRFKSIPSLISKLEKNGL-KPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKP 174

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLV-QEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           T STFN L+    ++   E   ++L L+ QE  +K + + + +LI       ++   + V
Sbjct: 175 TTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNV 234

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            ++M  +G++P+V TY  L    A+ G+ ++A G    M++  V P+      +I    +
Sbjct: 235 VYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCK 294

Query: 210 SGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G +  A   L  M N  VHP   + +   +L+K   +    D   E   ++ ++ +K  
Sbjct: 295 EGKMKDALRFLYRMRNYGVHP---NLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPD 351

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              ++  +N  S  G  +    ++DDM K G+ PD    S L      AG+ E A  +L 
Sbjct: 352 VVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLT 411

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
                G+   ++ +++++    +A   + A  +YE M  + + P + T   LI    +  
Sbjct: 412 AMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAK 471

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVA-----------CER-KDDVEVGLMLLSQAK 436
           +  K  E+L  M+  G+ P  +  +I LVA            +R K+DVE    ++   K
Sbjct: 472 EPQKAEELLQIMEQKGVAP--VKSTIQLVADAWHALGLANEAKRIKNDVEEAPKVMISTK 529

Query: 437 EDGV 440
           ED V
Sbjct: 530 EDDV 533



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 161/381 (42%), Gaps = 47/381 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PTL T+  L++     K  +    ++  +++ GLK D   +  +I   ++SG V    ++
Sbjct: 104 PTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKI 163

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM-RSKNVKPDRVVFNALITACG 208
           F +M + G +P   T+  LI G   AG   +      +M + +NVKP+   FN+LI A  
Sbjct: 164 FRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWC 223

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
               +  A++V+ +M A    + PD +T   L +A A  G+  RA               
Sbjct: 224 NKKRITEAWNVVYKMAA--SGLQPDVVTYNTLARAYAQNGETSRAE-------------- 267

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
                                 +  +M    V+P+E     +I+     GK++ A   L 
Sbjct: 268 ---------------------GMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLY 306

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             +N G+   ++ ++SL+    +  +     E    M+   +KP V T + ++ A     
Sbjct: 307 RMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVG 366

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            + K  E+  DM   G+ P+   +SIL     R  + E    LL+   + GV PN+V+F 
Sbjct: 367 LMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFT 426

Query: 449 CII-GMC--------SRRYEK 460
            II G C        SR YEK
Sbjct: 427 TIISGWCSAGKMEYASRVYEK 447



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 117/246 (47%), Gaps = 17/246 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L R     G  S    ++ +M+   ++  ++         CK  K +K+A RF   
Sbjct: 249 TYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGK-MKDALRFLYR 307

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + N    P L  FN L+       D++G  + L L++E G+K D   ++T++   +  G 
Sbjct: 308 MRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSVGL 367

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D   E+F +MV AGIEP++H +  L  G  +AG+  KA      M    V+P+ V+F  
Sbjct: 368 MDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTT 427

Query: 203 LITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +I+    +G ++   R ++ + EM      + P+  T   L+     A +  +A E+ ++
Sbjct: 428 IISGWCSAGKMEYASRVYEKMCEMG-----ICPNLKTFETLIWGYGEAKEPQKAEELLQI 482

Query: 260 IHKYNI 265
           + +  +
Sbjct: 483 MEQKGV 488


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/493 (21%), Positives = 202/493 (40%), Gaps = 47/493 (9%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV 62
           D  K +L + +  G    ++ DV       N L + G +S+ + L ++M  +G+      
Sbjct: 166 DKAKELLNWMWEQG----FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVAC 221

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPT----LSTFN-MLMSVCASSKDSEGAFQVLRL 117
           Y+       K    +  +  + +L+  P+    + ++N M+  +C   K  E +F++   
Sbjct: 222 YNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE-SFEIWHR 280

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +++     D   Y+TLI     SG +D    V+ EM   G+ P+V  Y  +++G  +AG+
Sbjct: 281 MKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGR 340

Query: 178 VAKAFGAYGIMRSKNVKP----------------------------------DRVVFNAL 203
           + +    + +M  +  +                                   D + +  L
Sbjct: 341 IEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVL 400

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +    ++G +++A  +L E  AE    D D     +++      G++D    V   + K+
Sbjct: 401 VHGLCKNGYLNKALSILEE--AENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKH 458

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             K  P V    IN   +    E A   + +M  KG  P  V  + LI+    A +   A
Sbjct: 459 GCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEA 518

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           + +++E  ++G    +I+YS LM      K    AL L+        KP V   N +I  
Sbjct: 519 YALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHG 578

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++   +++ S+MK     PN +T++ L+    +  D E    +     + G  P+
Sbjct: 579 LCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPD 638

Query: 444 LVMFKCII-GMCS 455
           ++ +   + G+CS
Sbjct: 639 IISYNITLKGLCS 651



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 185/446 (41%), Gaps = 72/446 (16%)

Query: 81  FRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F +F+ +  +P L T+N+L+ +    K  + A ++L  + E G   D   Y TLI + AK
Sbjct: 137 FLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAK 196

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRV 198
           +G +    ++F EM   G+ P+V  Y  LIDG  K G +  A   +  +++  +V P+  
Sbjct: 197 NGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIP 256

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAE------------VH------------------ 228
            +N +I    + G  D +F++   M               +H                  
Sbjct: 257 SYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEM 316

Query: 229 ---PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
               V PD +    ++     AG+++   E++K++ K   + T   Y I I    +    
Sbjct: 317 AENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKV 375

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A S+++ + +K    D +    L+      G +  A  IL+EA+N    +   +YSS+
Sbjct: 376 DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSM 435

Query: 346 M-GACS----------------------------------NAKNWQKALELYEHMKSIKL 370
           + G C                                    A   + AL  + +M S   
Sbjct: 436 INGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGC 495

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            PTV T N LI  L   ++  +   ++ +M   G  PN ITYS+L+    +   +++ L 
Sbjct: 496 FPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALN 555

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMCS 455
           L  QA E G  P++ M   II G+CS
Sbjct: 556 LWCQALEKGFKPDVKMHNIIIHGLCS 581



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 168/394 (42%), Gaps = 51/394 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKG---LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89
           N  +R GRI EC++L + ME++G   ++  + +    F N       + EA   ++L+P 
Sbjct: 333 NGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENA-----KVDEAISIWELLPE 387

Query: 90  PTLSTFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
                 +M   V        G    A  +L   +      D   Y+++I    + G++D 
Sbjct: 388 KDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDE 447

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
           +  V  +M   G +PN H   A+I+G  +A ++  A   +G M SK   P  V +N LI 
Sbjct: 448 VAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLIN 507

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
              ++     A+ ++ EM   +H    P+ IT   LM       ++D             
Sbjct: 508 GLSKAERFSEAYALVKEM---LHKGWKPNMITYSLLMNGLCQGKKLD------------- 551

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
                    +A+N   Q               +KG  PD    + +I     +GKVE A 
Sbjct: 552 ---------MALNLWCQA-------------LEKGFKPDVKMHNIIIHGLCSSGKVEDAL 589

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++  E K +     ++++++LM      +++++A ++++H+     +P + + N  +  L
Sbjct: 590 QLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGL 649

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
           C   ++   +  L+D    G+ P  IT++IL+ A
Sbjct: 650 CSCHRISDAVGFLNDAVDRGVLPTAITWNILVRA 683



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 157/357 (43%), Gaps = 8/357 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + ++N L++    S   + A       +  GL  + + Y  LI    +  + D   E+
Sbjct: 112 PGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKEL 171

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M   G  P+V +YG LI+  AK G ++ A   +  M  + V PD   +N LI    +
Sbjct: 172 LNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFK 231

Query: 210 SGAVDRAFDVLAEM--NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            G +  A ++   +     V+P  P +     ++      G+ D + E++  + K     
Sbjct: 232 KGDILNASEIWERLLKGPSVYPNIPSY---NVMINGLCKCGKFDESFEIWHRMKKNERGQ 288

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y+  I+    +G+ + A  VY +M + GV PD V  + +++    AG++E   E+ 
Sbjct: 289 DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELW 348

Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +  + +G    ++SY+ L+ G   NAK   +A+ ++E +          T   L+  LC 
Sbjct: 349 KVMEKEGCRT-VVSYNILIRGLFENAKV-DEAISIWELLPEKDCCADSMTYGVLVHGLCK 406

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
              L K + +L + ++     +T  YS ++    R+  ++    +L Q  + G  PN
Sbjct: 407 NGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPN 463



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 143/341 (41%), Gaps = 5/341 (1%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           R+ +  G +   + Y +L+    +S K D     F      G+ PN+ TY  LI    + 
Sbjct: 103 RMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRK 162

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            Q  KA      M  +   PD   +  LI +  ++G +  A  +  EM      V PD  
Sbjct: 163 KQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER--GVTPDVA 220

Query: 236 TIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
               L+      G +  A E++ +++   ++      Y + IN   + G ++ +  ++  
Sbjct: 221 CYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHR 280

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K     D    S LI     +G ++ A  + +E    G+S  ++ Y++++     A  
Sbjct: 281 MKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGR 340

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++ LEL++ M+    + TV + N LI  L +  ++ + + +   +     C +++TY +
Sbjct: 341 IEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGV 399

Query: 415 LLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454
           L+    +   +   L +L +A+   G +        I G+C
Sbjct: 400 LVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLC 440



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 2/157 (1%)

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKN 354
           T+K   P++V L+ +  +A ++   + A +I Q      G   GI SY+SL+ A   +  
Sbjct: 71  TQKCKCPEDVALTVIKAYAKNS-MPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNK 129

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           W +A   + + +++ L P + T N LI   C   Q  K  E+L+ M   G  P+  +Y  
Sbjct: 130 WDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGT 189

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L+ +  +   +   L L  +  E GV P++  +  +I
Sbjct: 190 LINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILI 226


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/459 (22%), Positives = 191/459 (41%), Gaps = 27/459 (5%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           +L+ F ++    A   D + + ++ + +Q +   K +  +YT +I+   + G ++   E+
Sbjct: 105 SLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEI 164

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   G+  +V +Y ALI+   + GQ   +      M+ + V P  + +N +I +C +
Sbjct: 165 FEEMPTHGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCAR 224

Query: 210 SGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G   +    + AEM  E   + PD IT   L+ ACAN G  D A  V++ +++  +   
Sbjct: 225 GGLNWEGLLSLFAEMRHE--GIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPD 282

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   +    +    E    +  +M   G +PD    + L++     G +  A  + +
Sbjct: 283 ITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFR 342

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + +        ++YS L+        +    EL+  MK    +P V T N LI    +G 
Sbjct: 343 QMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGG 402

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              + + +  DM    + PN  TY  L+ AC +    E    +L    E G++P+   + 
Sbjct: 403 YFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYT 462

Query: 449 CIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 508
            +I      Y +A +  E ++ FN+                       G+ PTVE  + +
Sbjct: 463 GVI----EAYGQAASYEEALVMFNTMNEM-------------------GSKPTVETYNSL 499

Query: 509 LGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
           +            E ++  +G S  A  R +   +I+G+
Sbjct: 500 INMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGY 538



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/446 (20%), Positives = 187/446 (41%), Gaps = 15/446 (3%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +   Y++DV   ++  + L  +G I+ C+++ ++  +  L D      A  F     +  
Sbjct: 69  EKGKYSYDVETLINKLSSLPPRGSIARCLEIFKN--KLSLNDF-----ALVFKEFAQRGD 121

Query: 77  IKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            + + R FK +       P    + +++S+       E + ++   +   G+      YT
Sbjct: 122 WQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYT 181

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA-FGAYGIMRS 190
            LI +  + G+ +   E+   M    + P++ TY  +I+ CA+ G   +     +  MR 
Sbjct: 182 ALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRH 241

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           + ++PD + +N L+ AC   G  D A  V   MN     + PD  T   L++      ++
Sbjct: 242 EGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNE--GGMVPDITTYRNLVETFGKLNKL 299

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           ++  E+ K +           Y + +   +  GD   A  V+  M +   +P+ V  S L
Sbjct: 300 EKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSML 359

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ++  G  G+ +   E+  E K       + +Y+ L+        +++ + L+  M    +
Sbjct: 360 LNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENV 419

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
           +P + T   LI A   G       ++L  M   G+ P+T  Y+ ++ A  +    E  L+
Sbjct: 420 EPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALV 479

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSR 456
           + +   E G  P +  +  +I M +R
Sbjct: 480 MFNTMNEMGSKPTVETYNSLINMFAR 505



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/443 (19%), Positives = 186/443 (41%), Gaps = 41/443 (9%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
            H V   + SY  LI    R G+    ++LLE M+++ +      Y+    +  +     
Sbjct: 170 THGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNW 229

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +     F  + +    P + T+N L++ CA+    + A  V R + E G+  D   Y  L
Sbjct: 230 EGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNL 289

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           + T  K  K++ + E+  EM ++G  P++ +Y  L++  A  G +  A G +  M+    
Sbjct: 290 VETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARC 349

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMN-AEVHP----------------------- 229
            P+ V ++ L+   G  G  D   ++  EM  +   P                       
Sbjct: 350 VPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVT 409

Query: 230 ---------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
                    V+P+  T   L+ AC   G  + A+++   + +  I  + + YT  I    
Sbjct: 410 LFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYG 469

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           Q   +E A  +++ M + G  P     ++LI+     G  + +  I+ +    G++    
Sbjct: 470 QAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRD 529

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           S++ ++        +++A++ Y  ++  + +P   T  A+++  C    + ++ E   ++
Sbjct: 530 SFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREI 589

Query: 401 KSLGLCPNTITYSILLVACERKD 423
           ++ G+ P+ + Y +++    R +
Sbjct: 590 RASGILPSVMCYCMMIAVYARSN 612



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 117/303 (38%), Gaps = 38/303 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  L+  C      E A ++L  + E G+    K YT +I    ++   +    +
Sbjct: 421 PNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVM 480

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+ M   G +P V TY +LI+  A+ G   ++      M    V  DR  FN +I    Q
Sbjct: 481 FNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQ 540

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  + A     E+  E     PD  T  A++     AG VD + E ++ I    I  + 
Sbjct: 541 GGQFEEAIKTYVEL--EKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRASGILPSV 598

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV--------------------------IPD 303
             Y + I   +++  W+ A  V D+M    V                          + D
Sbjct: 599 MCYCMMIAVYARSNRWDDAYEVLDEMVTNKVSNIHQVVGKMMKGDYDDYSNWQMVEYVFD 658

Query: 304 EV----------FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           ++          F + L++     G+ E A  +L EA  +G+   +   S L+ +    +
Sbjct: 659 KLNSEGCGLGMRFYNTLLEALWWLGQKERAARVLSEAIKRGLFPELFRKSKLVWSVDVHR 718

Query: 354 NWQ 356
            W+
Sbjct: 719 MWE 721


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 187/422 (44%), Gaps = 8/422 (1%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH Y      G+  E I +   M R G+      Y+     +CK+ ++++    F  +V 
Sbjct: 248 LHGY---CSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVK 304

Query: 89  N---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P  S +  L+   A+        Q+L ++   G + D  ++  LI   AK G VD 
Sbjct: 305 KGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDE 364

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
               F +M   G+ PN+ TYG ++D   + G+V  A   +  + S+ + P+ VVF  LI 
Sbjct: 365 AMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIH 424

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
                   D+A ++  EM      + P+ I    L+      G V RA+ ++ ++ + ++
Sbjct: 425 GLCACDKWDKAEELAVEMIGR--GICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDV 482

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           +     YT  I+     G  + A  + + M   GV P+EV  + +I+     G++E A  
Sbjct: 483 QCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACS 542

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + ++  ++G++ GI+ YS+++      +    A ELY  M    +K  + T N ++  LC
Sbjct: 543 LFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLC 602

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             +     + +  ++  +       T++I++ A  +    +    L +     G++PN+V
Sbjct: 603 QNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVV 662

Query: 446 MF 447
            +
Sbjct: 663 TY 664



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 175/399 (43%), Gaps = 17/399 (4%)

Query: 31  SYNRLIR----QGRISECIDLLEDM---ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           SYN L++    + R  + + LL  M   + +G    D V +    N    +  + +A+  
Sbjct: 169 SYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCL 228

Query: 84  FKLVPN----PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           F  + +    P   T+N +L   C+S K  E A  + R +   G++ D   Y TL+    
Sbjct: 229 FDEMLDQGMSPNCITYNCLLHGYCSSGKPKE-AIGIFRKMCRDGVEPDVVTYNTLMVYLC 287

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K+G+     +VF  MV  G +P+   YG L+ G A  G + +      +M     +PD  
Sbjct: 288 KNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHY 347

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           +FN LI A  + G VD A    ++M  +   + P+ +T G +M A    G+VD A   + 
Sbjct: 348 IFNILIGAYAKHGMVDEAMLAFSKMRQQ--GLHPNIVTYGTVMDALCRVGKVDDAMSQFD 405

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +    +     V+   I+       W+ A  +  +M  +G+ P+ +F + L++     G
Sbjct: 406 RLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEG 465

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            V  A  I        +   +I+Y++L+ G C + K   +A +L E M    +KP   T 
Sbjct: 466 MVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGK-VDEATKLLEGMVLDGVKPNEVTY 524

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           N +I   C   ++     +   M S G+ P  + YS +L
Sbjct: 525 NTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTIL 563



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 139/328 (42%), Gaps = 7/328 (2%)

Query: 94  TFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           TF+ +L  +C   + S+     LR +   G   +   Y  L+       +      + H 
Sbjct: 133 TFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHT 192

Query: 153 MV----NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           M+      G  P+V +Y  +I+G  + GQ+ KA+  +  M  + + P+ + +N L+    
Sbjct: 193 MMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYC 252

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            SG    A  +  +M  +   V+PD +T   LM      G+   AR+V+  + K   K  
Sbjct: 253 SSGKPKEAIGIFRKMCRD--GVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPD 310

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             +Y   ++  +  G       + D M + G  PD    + LI      G V+ A     
Sbjct: 311 SSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFS 370

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + + QG+   I++Y ++M A         A+  ++ + S  L P       LI  LC  D
Sbjct: 371 KMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACD 430

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +  K  E+  +M   G+CPNTI ++ LL
Sbjct: 431 KWDKAEELAVEMIGRGICPNTIFFNTLL 458



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 141/316 (44%), Gaps = 13/316 (4%)

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +F+ M  A    ++ TY  +I  C++AG +  AF A G +         + F+ L+  
Sbjct: 85  LSLFNRMPRA----DLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKG 140

Query: 207 CGQSGAVDRAFDV-LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
                    A D+ L  M A      P+  +   L+K   +  +  +A  +   +   + 
Sbjct: 141 LCHDKRTSDAMDIALRRMPAL--GCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDT 198

Query: 266 KG--TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +G   P+V  YT  IN   + G  + A  ++D+M  +G+ P+ +  + L+     +GK +
Sbjct: 199 RGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPK 258

Query: 322 AAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            A  I ++    G+   +++Y++LM   C N ++ + A ++++ M     KP  S    L
Sbjct: 259 EAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSME-ARKVFDSMVKKGHKPDSSIYGTL 317

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +        L +  ++L  M   G  P+   ++IL+ A  +   V+  ++  S+ ++ G+
Sbjct: 318 LHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGL 377

Query: 441 IPNLVMFKCIIGMCSR 456
            PN+V +  ++    R
Sbjct: 378 HPNIVTYGTVMDALCR 393



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 144/380 (37%), Gaps = 45/380 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRFFKLVPNPT 91
           L R G++ + +   + +  +GL     V+      +C   K  KA + A         P 
Sbjct: 391 LCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPN 450

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
              FN L++          A  +  L+    ++ D   YTTLI      GKVD   ++  
Sbjct: 451 TIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLE 510

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            MV  G++PN  TY  +I+G  K G++  A   +  M SK V P  V+++ ++    Q+ 
Sbjct: 511 GMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTR 570

Query: 212 AVDRA------------------FDVLAEMNAEVHPVDP---------------DHITIG 238
            +  A                  ++++ +   + +  D                 + T  
Sbjct: 571 RIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFN 630

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            ++ A    G+ D A++++  +    +      Y + +    + G  E    ++  + K 
Sbjct: 631 IMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKN 690

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G   D   L+AL+      G+V  A   L +      S+   +  SL+   S+ K  Q  
Sbjct: 691 GCTADSRMLNALVGKLPQKGEVRKAGVYLSKIDENNFSLEASTAESLVFLVSSGKYDQ-- 748

Query: 359 LELYEHMKSI--KLKPTVST 376
                H+ SI  K +PT  +
Sbjct: 749 -----HINSIPEKYRPTAKS 763



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 39/201 (19%), Positives = 86/201 (42%), Gaps = 7/201 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFF 84
           +YN +I    + GRI +   L   M  KG+     +Y      + ++++  A KE + + 
Sbjct: 523 TYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWM 582

Query: 85  -KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K      + T+N+++     +  ++ A ++   +         + +  +I    K G+ 
Sbjct: 583 IKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRH 642

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   ++F  ++  G+ PNV TY  ++    + G + +    +  +       D  + NAL
Sbjct: 643 DEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNAL 702

Query: 204 ITACGQSGAVDRAFDVLAEMN 224
           +    Q G V +A   L++++
Sbjct: 703 VGKLPQKGEVRKAGVYLSKID 723


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/505 (22%), Positives = 210/505 (41%), Gaps = 45/505 (8%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNM 97
           + E  DL   M + G +   +  +     +  S+   K    F  ++ +   P    +  
Sbjct: 103 LDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGK 162

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
            +      KD +  F++++ + + G+      Y  ++    K  ++    ++F EM+   
Sbjct: 163 AVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRN 222

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + PN  TY  LIDG  K G + +A G    M+ +NV+ + V +N+L+     SG VD A 
Sbjct: 223 MVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAR 282

Query: 218 DVLAEMNA--------------------------EVHPVDPDHITIGALMKACANAGQVD 251
           +VL EM                            +   +  D  T   L+      G+++
Sbjct: 283 EVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIE 342

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +A EV   + +  +  +   Y I +N   Q GD + A    + M ++G+ P+ +  + +I
Sbjct: 343 KAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVI 402

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                 G+V+ A   ++    +G+S  + +Y+SL+       ++ +  E  + M    +K
Sbjct: 403 SKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIK 462

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P V +  +LI  LC   +L     VL+DM   G+ PN   Y++L+ A      ++     
Sbjct: 463 PNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRF 522

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL---------NEHVLSFN---SGRPQ 477
             +  + G+   LV +  +I    R  R +KA  L         N  V+++N   SG  +
Sbjct: 523 FDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAK 582

Query: 478 IENKWTSLALMVYREAIVAGTIPTV 502
             N  T   L +Y +  + G  PTV
Sbjct: 583 SVN--TQKCLELYDKMKILGIKPTV 605



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 160/363 (44%), Gaps = 10/363 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+    ++G + + I   E ME +GL      ++      C++ +         ++
Sbjct: 362 SYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRM 421

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V    +PT+ T+N L++           F+ L  + +AG+K +   Y +LI    K  K+
Sbjct: 422 VEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKL 481

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                V  +M+  G+ PN   Y  LI+      ++  AF  +  M    +    V +N L
Sbjct: 482 IDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTL 541

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I   G++G V +A D+  +M  +    +PD IT  +L+   A +    +  E+Y  +   
Sbjct: 542 INGLGRNGRVKKAEDLFLQMAGK--GCNPDVITYNSLISGYAKSVNTQKCLELYDKMKIL 599

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            IK T   +   I  C + G       ++ +M +  ++PD+   + +I      G V  A
Sbjct: 600 GIKPTVGTFHPLIYACRKEGVVTMD-KMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKA 658

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             + Q+  +QG+    ++Y+SL+ A    +   +   L + MK+  L P V T N LI  
Sbjct: 659 MSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKG 718

Query: 384 LCD 386
           LCD
Sbjct: 719 LCD 721



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 165/382 (43%), Gaps = 39/382 (10%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E A +VL  + E G+      Y  L+    + G V        +M   G+EPN  T+  +
Sbjct: 342 EKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTV 401

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I    + G+V  A      M  K V P    +N+LI   GQ G   R F+ L EM+    
Sbjct: 402 ISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKA-- 459

Query: 229 PVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
            + P+ I+ G+L+   C +   +D    +  MI +  +    E+Y + I         + 
Sbjct: 460 GIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGR-GVSPNAEIYNMLIEASCSLSKLKD 518

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A   +D+M + G+    V  + LI+  G  G+V+ A ++  +   +G +  +I+Y+SL+ 
Sbjct: 519 AFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLIS 578

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA---------------LCDGDQLP- 391
             + + N QK LELY+ MK + +KPTV T + LI A               +   D +P 
Sbjct: 579 GYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVVTMDKMFQEMLQMDLVPD 638

Query: 392 ------------------KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
                             K M +   M   G+  + +TY+ L++A  R   V     L+ 
Sbjct: 639 QFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVD 698

Query: 434 QAKEDGVIPNLVMFKCII-GMC 454
             K  G++P +  +  +I G+C
Sbjct: 699 DMKAKGLVPKVDTYNILIKGLC 720



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 183/446 (41%), Gaps = 39/446 (8%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVPNPTLSTFNML 98
            +L++ M + G+      Y+     +CK ++ IK+A + F       +VPN    T+N L
Sbjct: 177 FELMKSMVKDGMGPSVFAYNLVLGGLCKVRR-IKDARKLFDEMIQRNMVPNTV--TYNTL 233

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           +         E A      ++E  ++ +   Y +L+     SG+VD   EV  EM  +G 
Sbjct: 234 IDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGF 293

Query: 159 EP----------------------------NVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            P                            +  TY  L++G  + G++ KA      +  
Sbjct: 294 LPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVE 353

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
             V P ++ +N L+ A  Q G V +A  +L     E   ++P+ IT   ++      G+V
Sbjct: 354 NGVTPSKISYNILVNAYCQEGDVKKA--ILTTEQMEERGLEPNRITFNTVISKFCETGEV 411

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D A    + + +  +  T E Y   IN   Q G +       D+M K G+ P+ +   +L
Sbjct: 412 DHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSL 471

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I+      K+  A  +L +   +G+S     Y+ L+ A  +    + A   ++ M    +
Sbjct: 472 INCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGI 531

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
             T+ T N LI  L    ++ K  ++   M   G  P+ ITY+ L+    +  + +  L 
Sbjct: 532 DATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLE 591

Query: 431 LLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L  + K  G+ P +  F  +I  C +
Sbjct: 592 LYDKMKILGIKPTVGTFHPLIYACRK 617



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 2/186 (1%)

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
           CS +   + A  +Y  M K G +P    ++ L+     +   E    +  +  + G    
Sbjct: 97  CSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPD 156

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
            ++Y   + A    K+  K  EL + M    + P+V   N ++  LC   ++    ++  
Sbjct: 157 AVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFD 216

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SR 456
           +M    + PNT+TY+ L+    +   +E  L    + KE  V  NLV +  ++ G+C S 
Sbjct: 217 EMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSG 276

Query: 457 RYEKAR 462
           R + AR
Sbjct: 277 RVDDAR 282



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/257 (20%), Positives = 104/257 (40%), Gaps = 14/257 (5%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHITIGALMKACA 245
           I R + +   R + + L+T          AF  L+E++A V  P   D+     L+  C+
Sbjct: 52  ISRGRTITARRFLRSLLLTKT--------AFSSLSELHAHVSKPFFSDN-----LLWLCS 98

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
            +  +D A ++Y  + K     +       +     +  +E   +V+ D+   G  PD V
Sbjct: 99  VSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPDAV 158

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
                +  A     ++  FE+++     G+   + +Y+ ++G     +  + A +L++ M
Sbjct: 159 AYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEM 218

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
               + P   T N LI   C    + + +     MK   +  N +TY+ LL        V
Sbjct: 219 IQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRV 278

Query: 426 EVGLMLLSQAKEDGVIP 442
           +    +L + +  G +P
Sbjct: 279 DDAREVLLEMEGSGFLP 295



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +L+  CS +K   +A +LY  M+     P+  ++N L+  L D     KT+ V +D+   
Sbjct: 92  NLLWLCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDS 151

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKA 461
           G  P+ + Y   + A     D++ G  L+    +DG+ P++  +  ++ G+C  RR + A
Sbjct: 152 GTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDA 211

Query: 462 RTLNEHVLSFN 472
           R L + ++  N
Sbjct: 212 RKLFDEMIQRN 222


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/466 (24%), Positives = 202/466 (43%), Gaps = 83/466 (17%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDA 145
           P + ++N+L++       S+ A ++L ++ + G   DC      Y+T+I    K G +D 
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDG--GDCPPDVVSYSTVINGFFKEGDLDK 106

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            +  ++EM++  I PNV TY ++I    KA  V KA      M    V PD + +N+++ 
Sbjct: 107 TYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVH 166

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-------- 257
               SG    A   L +M ++   V+PD +T  +LM      G+   AR+++        
Sbjct: 167 GFCSSGQPKEAIVFLKKMRSD--GVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGL 224

Query: 258 --------KMIHKYNIKGT-----------------PEVYTIAINCCS--QTGDWEFACS 290
                    ++  Y  KG                  P  Y  +I  C+  +    E A  
Sbjct: 225 KPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAML 284

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V+  M ++G+ P+ V   A+I     +G+VE A    ++  ++G+S G I Y+SL+    
Sbjct: 285 VFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLC 344

Query: 351 NAKNWQKALEL-----------------------------------YEHMKSIKLKPTVS 375
               W++A EL                                   ++ M  I +KP + 
Sbjct: 345 TCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 404

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T + LI   C   ++ +  ++L+ M S+G+ P+ +TYS L+    +   ++  L+L  + 
Sbjct: 405 TYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREM 464

Query: 436 KEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSFNSGRPQIE 479
           +  GV P+++ +  I+     +RR   A+ L  +V    SGR Q+E
Sbjct: 465 ESSGVSPDIITYNIILQGLFQTRRTAAAKEL--YVGITKSGR-QLE 507



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 182/401 (45%), Gaps = 13/401 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN +I    +   + + +++L  M + G++     Y++     C S +  KEA
Sbjct: 119 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQP-KEA 177

Query: 81  FRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
             F K + +    P + T+N LM  +C + + +E A ++   + + GLK +   Y TL+ 
Sbjct: 178 IVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTE-ARKIFDSMTKRGLKPEITTYGTLLQ 236

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
             A  G +  M  +   MV  GI PN + +  L+   AK  +V +A   +  MR + + P
Sbjct: 237 GYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNP 296

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + V + A+I    +SG V+ A     +M  E   + P +I   +L+       + +RA E
Sbjct: 297 NAVTYGAVIGILCKSGRVEDAMLYFEQMIDE--GLSPGNIVYNSLIHGLCTCNKWERAEE 354

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +   +    I      +   I+   + G    +  ++D M + GV PD +  S LID   
Sbjct: 355 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 414

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            AGK++ A ++L    + G+    ++YS+L+         + AL L+  M+S  + P + 
Sbjct: 415 LAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDII 474

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           T N ++  L    +     E+   +   G      TY+I+L
Sbjct: 475 TYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIIL 515



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 188/426 (44%), Gaps = 11/426 (2%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN ++      G+  E I  L+ M   G+      Y++    +CK+ +   EA + F  
Sbjct: 160 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC-TEARKIFDS 218

Query: 85  --KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             K    P ++T+  L+   A+         +L L+   G+  +  +++ L+   AK  K
Sbjct: 219 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEK 278

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           V+    VF +M   G+ PN  TYGA+I    K+G+V  A   +  M  + + P  +V+N+
Sbjct: 279 VEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNS 338

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI         +RA +++ EM      +  + I   +++ +    G+V  + +++ ++ +
Sbjct: 339 LIHGLCTCNKWERAEELILEMLD--RGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR 396

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             +K     Y+  I+     G  + A  +   M   G+ PD V  S LI+      +++ 
Sbjct: 397 IGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKD 456

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  + +E ++ G+S  II+Y+ ++      +    A ELY  +     +  +ST N ++ 
Sbjct: 457 ALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILH 516

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC        + +  ++  + L     T++I++ A  +    +    L      +G++P
Sbjct: 517 GLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVP 576

Query: 443 NLVMFK 448
           N   ++
Sbjct: 577 NYWTYR 582



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 191/449 (42%), Gaps = 65/449 (14%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITA 206
           VF E++  GI P+V +Y  L++G     +  +A     IM     +  PD V ++ +I  
Sbjct: 39  VFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVING 97

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G +D+ +    EM  +   + P+ +T  +++ A   A  VD+A EV          
Sbjct: 98  FFKEGDLDKTYSTYNEMLDQ--RISPNVVTYNSIIAALCKAQTVDKAMEVLTT------- 148

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                                       M K GV+PD +  ++++     +G+ + A   
Sbjct: 149 ----------------------------MVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVF 180

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L++ ++ G+   +++Y+SLM          +A ++++ M    LKP ++T   L+     
Sbjct: 181 LKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYAT 240

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L +   +L  M   G+ PN   +SIL+ A  +++ VE  +++ S+ ++ G+ PN V 
Sbjct: 241 KGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVT 300

Query: 447 FKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQIE-----------NKW---TSLALMVY 490
           +  +IG+   S R E A    E ++        I            NKW     L L + 
Sbjct: 301 YGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEML 360

Query: 491 REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--- 547
              I   TI    ++       ++  +  + + +V  +GV  D +  S   +LIDG+   
Sbjct: 361 DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYS---TLIDGYCLA 416

Query: 548 GEYDPRAFSLLEEAASFGIVP-CVSFKEI 575
           G+ D  A  LL    S G+ P CV++  +
Sbjct: 417 GKMD-EATKLLASMVSVGMKPDCVTYSTL 444



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 172/397 (43%), Gaps = 19/397 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    + GR +E   + + M ++GL      Y         ++ A+ E      L
Sbjct: 195 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTY-GTLLQGYATKGALVEMHGLLDL 253

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P    F++L+   A  +  E A  V   +++ GL  +   Y  +I    KSG+
Sbjct: 254 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 313

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           V+     F +M++ G+ P    Y +LI G     +  +A      M  + +  + + FN+
Sbjct: 314 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 373

Query: 203 LITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +I +  + G V   ++ FD++  +      V PD IT   L+     AG++D A ++   
Sbjct: 374 IIDSHCKEGRVIESEKLFDLMVRIG-----VKPDIITYSTLIDGYCLAGKMDEATKLLAS 428

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +    +K     Y+  IN   +    + A  ++ +M   GV PD +  + ++       +
Sbjct: 429 MVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRR 488

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
             AA E+       G  + + +Y+ ++ G C N K    AL +++++  + LK    T N
Sbjct: 489 TAAAKELYVGITKSGRQLELSTYNIILHGLCKN-KLTDDALRMFQNLCLMDLKLEARTFN 547

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +I AL    +  +  ++     S GL PN  TY ++
Sbjct: 548 IMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLM 584


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 169/369 (45%), Gaps = 4/369 (1%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +P+   +   ++ S C  ++   G F VL  + + G + D   +TTLI      GK+   
Sbjct: 105 IPSDVYTLAIVINSFCHLNRVDFG-FSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEA 163

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +F +MV  G +PN  TYG LI G  K G    A      M  KN +P+ + +N +I  
Sbjct: 164 LHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDC 223

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   V+ A ++ +EM A+   + P+  T  +++       +      +   +    I 
Sbjct: 224 LFKDRQVNEALNIFSEMIAK--GISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIM 281

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
               ++T  ++   + G    A  V D M ++GV PD V  +AL+D      +++ A ++
Sbjct: 282 PNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKV 341

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
                 +G +  +ISYS+L+      +   KA+ L+E M   +L P + T N LI  LC 
Sbjct: 342 FDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCH 401

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L   + +  +M + G  P+ +TY ILL    +   ++  + +L   +   + P++  
Sbjct: 402 VGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQS 461

Query: 447 FKCII-GMC 454
           +  +I GMC
Sbjct: 462 YNIVIDGMC 470



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 169/386 (43%), Gaps = 10/386 (2%)

Query: 77  IKEAFRFF-KLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           I EA   F K+V     P   T+  L+       +S  A ++LR + +   + +   Y T
Sbjct: 160 IGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNT 219

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           +I    K  +V+    +F EM+  GI PNV TY ++I G  K  +          M    
Sbjct: 220 IIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSK 279

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + P+ V+F  L+ A  + G V  A DV+  M      V+PD +T  ALM       ++D 
Sbjct: 280 IMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQR--GVEPDVVTYTALMDGHCLRSEMDE 337

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A +V+  + +         Y+  IN   +    + A  ++++M ++ ++P+ V  + LI 
Sbjct: 338 ADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIH 397

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
              H G++  A  +  E    G    +++Y  L+      ++  +A+ + + ++   L P
Sbjct: 398 GLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAP 457

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            + + N +I  +C   +L    ++ S + S GL P+  TY+I++     +  +     L 
Sbjct: 458 DIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLF 517

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRRY 458
            +   DG  P+     C   + +R +
Sbjct: 518 REMNTDGCSPD----DCTYNLITRGF 539



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/388 (20%), Positives = 165/388 (42%), Gaps = 9/388 (2%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A+    R   + P P++  F  +++  A+ K       + + +   G+ +D      +I
Sbjct: 57  EALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVI 116

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +     +VD  F V  ++   G +P+  T+  LI G    G++ +A   +  M  +  +
Sbjct: 117 NSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQ 176

Query: 195 PDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           P+ V +  LI      G S A  R    + + N E     P+ IT   ++       QV+
Sbjct: 177 PNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCE-----PNVITYNTIIDCLFKDRQVN 231

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A  ++  +    I      Y   I+   +  +W+   ++ ++M    ++P+ V  + L+
Sbjct: 232 EALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLV 291

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
           D     G V  A +++     +G+   +++Y++LM          +A ++++ M      
Sbjct: 292 DALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCA 351

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P V + + LI   C   ++ K M +  +M    L PN +TY+ L+        +   + L
Sbjct: 352 PNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIAL 411

Query: 432 LSQAKEDGVIPNLVMFKCIIG-MCSRRY 458
             +    G IP+LV ++ ++  +C  R+
Sbjct: 412 FHEMVASGQIPDLVTYRILLDYLCKTRH 439



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 165/375 (44%), Gaps = 5/375 (1%)

Query: 82  RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + FKL   P  +TF  L+  +C   K  E      ++V E G + +   Y TLI    K 
Sbjct: 134 KIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGE-GFQPNGVTYGTLIHGLCKV 192

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G   A   +   MV    EPNV TY  +ID   K  QV +A   +  M +K + P+   +
Sbjct: 193 GNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTY 252

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N++I    +         ++ EM      + P+ +    L+ A    G V  A +V  ++
Sbjct: 253 NSIIHGLCKFSEWKHVATLMNEMVDS--KIMPNVVIFTTLVDALCKEGMVTIAHDVVDVM 310

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            +  ++     YT  ++      + + A  V+D M +KG  P+ +  S LI+      ++
Sbjct: 311 IQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRI 370

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A  + +E   + +   I++Y++L+    +    + A+ L+  M +    P + T   L
Sbjct: 371 DKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRIL 430

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +  LC    L + M +L  ++   L P+  +Y+I++    R  ++E    L S     G+
Sbjct: 431 LDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGL 490

Query: 441 IPNLVMFKCII-GMC 454
            P++  +  +I G+C
Sbjct: 491 HPDVWTYTIMINGLC 505



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/435 (21%), Positives = 180/435 (41%), Gaps = 15/435 (3%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRF 83
           ++  LIR    +G+I E + L + M  +G       Y      +CK   S+ AI+     
Sbjct: 146 TFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSM 205

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P + T+N ++      +    A  +   +   G+  +   Y ++I    K  + 
Sbjct: 206 VQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEW 265

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
             +  + +EMV++ I PNV  +  L+D   K G V  A     +M  + V+PD V + AL
Sbjct: 266 KHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTAL 325

Query: 204 ITA-CGQS--GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +   C +S     D+ FD +           P+ I+   L+       ++D+A  +++ +
Sbjct: 326 MDGHCLRSEMDEADKVFDTMVRKGCA-----PNVISYSTLINGYCKIQRIDKAMYLFEEM 380

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            +  +      Y   I+     G    A +++ +M   G IPD V    L+D+      +
Sbjct: 381 CQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHL 440

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A  +L+  +   ++  I SY+ ++         + A +L+  + S  L P V T   +
Sbjct: 441 DQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIM 500

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I  LC    L +  ++  +M + G  P+  TY+++     R ++    + LL +    G 
Sbjct: 501 INGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGF 560

Query: 441 IPNLVMFKCIIGMCS 455
             +      I+ M S
Sbjct: 561 SADASTITLIVEMLS 575



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 154/363 (42%), Gaps = 9/363 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    +  +++E +++  +M  KG+      Y++    +CK  +    A    ++
Sbjct: 216 TYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEM 275

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V +   P +  F  L+           A  V+ ++ + G++ D   YT L+       ++
Sbjct: 276 VDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEM 335

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   +VF  MV  G  PNV +Y  LI+G  K  ++ KA   +  M  + + P+ V +N L
Sbjct: 336 DEADKVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTL 395

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I      G +  A  +  EM A      PD +T   L+        +D+A  + K I   
Sbjct: 396 IHGLCHVGRLRDAIALFHEMVASGQI--PDLVTYRILLDYLCKTRHLDQAMAMLKAIEGS 453

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           N+    + Y I I+   + G+ E A  ++  ++ KG+ PD    + +I+     G +  A
Sbjct: 454 NLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEA 513

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            ++ +E    G S    +Y+ +            A++L + M         ST+  ++  
Sbjct: 514 TKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEM 573

Query: 384 LCD 386
           L D
Sbjct: 574 LSD 576



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 72/200 (36%), Gaps = 9/200 (4%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      GR+ + I L  +M   G +     Y      +CK+ + + +A    K 
Sbjct: 391 TYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKT-RHLDQAMAMLKA 449

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + ++N+++       + E A  +   +   GL  D   YT +I      G 
Sbjct: 450 IEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGL 509

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +    ++F EM   G  P+  TY  +  G  +  +   A      M  +    D      
Sbjct: 510 LAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITL 569

Query: 203 LITACGQSGAVDRAFDVLAE 222
           ++      G       +L E
Sbjct: 570 IVEMLSDDGLDQSVKQILHE 589


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 175/400 (43%), Gaps = 9/400 (2%)

Query: 43  ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNML 98
           E  +L  DM R G+      ++     +CK +  ++E+ R    V        L TFN+ 
Sbjct: 199 EAYELFNDMLRIGIFPDVSTFNKLLHTLCK-KGEVQESERLLNKVLKKGMCSNLFTFNIF 257

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           +          GA  +L  V   GL  D   Y TLI    K+  V    +  H++VN G+
Sbjct: 258 IQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGL 317

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           EP+  TY  LIDG  K G +  A         K   PD   + +LI    Q+  +DRA  
Sbjct: 318 EPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRA-- 375

Query: 219 VLAEMNAEV-HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
            LA  NA +   + P  I    L+K     G + +A ++   + +         Y + IN
Sbjct: 376 -LALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVIN 434

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
              + G    A ++ +D   KG +PD    + LID      K+E   +IL +  + G++ 
Sbjct: 435 GLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTP 494

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
            +I+Y+S++   S A   +  +E +E M      P   T N L  +LC   ++ + ++++
Sbjct: 495 DVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLV 554

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
            ++ + G+ P+T++++ ++       D++    L  +  E
Sbjct: 555 DEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGE 594



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 124/269 (46%), Gaps = 2/269 (0%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           + R    K   + +  +I   G  G      +VLAE   ++     + + IGA MK+   
Sbjct: 30  VKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAETRMDIDNSLLEGVYIGA-MKSYGR 88

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G+V  A +V++ +  YN + +   Y   +N   ++G ++ A  V+  M   G++PD   
Sbjct: 89  KGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYT 148

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            +  I       +  +A  +L    +QG  +  ++Y +++          +A EL+  M 
Sbjct: 149 FTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDML 208

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
            I + P VST N L+  LC   ++ ++  +L+ +   G+C N  T++I +    RK  + 
Sbjct: 209 RIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLS 268

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
             + +L     +G+ P++V +  +I G+C
Sbjct: 269 GAMSMLDSVIREGLTPDVVTYNTLICGLC 297



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/357 (20%), Positives = 131/357 (36%), Gaps = 57/357 (15%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----------QKAI 77
           YN LI+    +G I + + ++ +M   G       Y+     +CK             AI
Sbjct: 394 YNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAI 453

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            + +        P + TFN L+         E   Q+L  +   G+  D   Y +++   
Sbjct: 454 AKGYV-------PDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGL 506

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
           +K+ K + + E F  MV  G  PN  TY  L +   KAG+V +A      + +K + PD 
Sbjct: 507 SKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDT 566

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V F  +I+    +G +  A+ +   M                               E Y
Sbjct: 567 VSFATIISGFANNGDLKGAYQLFRRMG------------------------------EQY 596

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           K+ H      T   Y I IN  ++  D      ++ +M   G  PD      +ID     
Sbjct: 597 KVSH------TTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCIT 650

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
           G  ++ ++ L E   +G    + ++  ++          +A+++   M    + P V
Sbjct: 651 GNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPEV 707



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 165/398 (41%), Gaps = 17/398 (4%)

Query: 70  VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK-DSEGAFQVLR-LVQEAGLKADC 127
           V K QK   +A   F  V        ++L   C   K    G F  +  ++ E  +  D 
Sbjct: 13  VLKQQKDPLKALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAETRMDIDN 72

Query: 128 KL----YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
            L    Y   + +  + GKV    +VF  M     EP+V +Y A+++   ++G   +A  
Sbjct: 73  SLLEGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHK 132

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
            +  M++  + PD   F   I +  ++     A  +L  M ++        +   A    
Sbjct: 133 VFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQ-----GCQLNAVAYCTV 187

Query: 244 CANAGQVDRAREVYKMIHK-YNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGV 300
            A   + +   E Y++ +    I   P+V T    ++   + G+ + +  + + + KKG+
Sbjct: 188 VAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGM 247

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKAL 359
             +    +  I      G +  A  +L     +G++  +++Y++L+ G C N+ N  +A 
Sbjct: 248 CSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNS-NVVEAE 306

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           +    + +  L+P   T N LI   C    L    ++L      G  P+  TY  L+   
Sbjct: 307 KYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGL 366

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
            + D+++  L L + A   G+ P ++++  +I G+C  
Sbjct: 367 CQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQE 404


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 190/430 (44%), Gaps = 18/430 (4%)

Query: 65  ARFFNVCKSQKAI-KEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           A F   CK+       A  FF L+    P P+LS+FN L+S  A  K     F +   ++
Sbjct: 37  AFFLRHCKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMR 96

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
            +GL +D      L+       ++   F  F  ++  G  PN+ TY  LI G     +++
Sbjct: 97  LSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRIS 156

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----PDHI 235
           +A   +  M+     PD V +  LI     +G ++ A  +  EM  ++   +    P+ I
Sbjct: 157 EATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVI 216

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYD 293
           T   ++      G+ D A+++++ +    +  +   Y   I+  CC+  G WE +  + D
Sbjct: 217 TYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCA--GKWEESKRLLD 274

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +M  +G+ PD V  + LID     GKV  A ++L      GI   +++Y+SL+       
Sbjct: 275 EMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVG 334

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           +   A EL+  M S   +P V + N LI       ++ + M++ ++M  +G  PN ITY 
Sbjct: 335 DLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYD 394

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR--YEKARTLNEHVLS 470
            LL        V+    L S  K  G+  N   +   + G+C     +E  +   E  L 
Sbjct: 395 SLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTE--LK 452

Query: 471 FNSGRPQIEN 480
            ++ + +IEN
Sbjct: 453 SSNFKLEIEN 462



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 203/450 (45%), Gaps = 25/450 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N L    R+ E       + R+G       Y+     +C   + I EA R F    KL  
Sbjct: 112 NCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHR-ISEATRLFLRMQKLGC 170

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE-----AGLKADCK----LYTTLITTCAK 139
            P + T+  L+     + +   A   L+L QE     +  + +CK     Y  ++    K
Sbjct: 171 TPDVVTYGTLIKGLCGTGNINIA---LKLHQEMLNDISRYEINCKPNVITYNIIVDGLCK 227

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G+ D   ++F EM   G+ P++ +Y +LI G   AG+  ++      M  + ++PD V 
Sbjct: 228 VGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVT 287

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           FN LI    + G V  A  +L  M      + PD +T  +L++     G ++ ARE++  
Sbjct: 288 FNVLIDTLCKEGKVIEAKKLLGVMIES--GIVPDLVTYNSLIEGFCMVGDLNSARELFVS 345

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +     +     Y + IN  S+T   E A  +Y++M   G  P+ +   +L+     AGK
Sbjct: 346 MPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGK 405

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           V+ A ++    K  GI+    +Y   + G C N   ++ A++L+  +KS   K  +  +N
Sbjct: 406 VDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFE-AMKLFTELKSSNFKLEIENLN 464

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI  LC   +L    E+   + + G  PN +TY+I++    R+  V+   +L+ + + +
Sbjct: 465 CLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEAN 524

Query: 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
           G  P+++ +  ++    R + ++  L E V
Sbjct: 525 GCTPDIITYNTLM----RGFYESNKLEEVV 550



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 175/359 (48%), Gaps = 5/359 (1%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P++ ++N L+   C + K  E   ++L  + + GL+ D   +  LI T  K GKV    +
Sbjct: 248 PSIISYNSLIHGFCCAGKWEESK-RLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKK 306

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M+ +GI P++ TY +LI+G    G +  A   +  M SK  +PD + +N LI    
Sbjct: 307 LLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYS 366

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++  V+ A  +  EM   +    P+ IT  +L+K    AG+VD A++++ ++  + I   
Sbjct: 367 KTLKVEEAMKLYNEM--LLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAEN 424

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I ++   +      A  ++ ++       +   L+ LID    AGK+E A+E+ +
Sbjct: 425 SYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFE 484

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +  N+G    +++Y+ ++          KA  L + M++    P + T N L+    + +
Sbjct: 485 KLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESN 544

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVM 446
           +L + +++L  M    + P+ IT SI++    + +  +  L LL +   + GV  +L+M
Sbjct: 545 KLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPIQKGVDKHLLM 603



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 23/216 (10%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR-FFNVCKSQKAIKEAFRF 83
           V E +  YN ++  G+    I    D   KG+    KV  A+  F+V K+    + ++  
Sbjct: 371 VEEAMKLYNEMLLVGKRPNVITY--DSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSY-- 426

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKS 140
                  T   F  L  +C +    +  F+ ++L  E   +  K + +    LI    K+
Sbjct: 427 -------TYGIF--LDGLCKN----DCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKA 473

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK++  +E+F ++ N G EPNV TY  +I G  + GQV KA      M +    PD + +
Sbjct: 474 GKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITY 533

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           N L+    +S  ++    +L  M  +   V PD IT
Sbjct: 534 NTLMRGFYESNKLEEVVQLLHRMAQK--DVSPDAIT 567


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 171/401 (42%), Gaps = 9/401 (2%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLR 116
            Y +     CK  + + +A++ F+++P        +S  N++   C   K  E A ++  
Sbjct: 227 TYTSLILGYCKIHE-LGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDE-ALELFF 284

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
            ++E G   D   YT L+    + GK     + F EMV  GIEPNV+TY  LID   K G
Sbjct: 285 QMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVG 344

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           ++ +       M  K +    V FNALI    + G ++ A  VL  M  +++ V P+  T
Sbjct: 345 KMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSM--KLNKVCPNSRT 402

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              L+        +DRA  +   +++  +      Y   I+   +    + A  ++  M 
Sbjct: 403 YNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMI 462

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           K G +PD+    A ID     GKVE A ++ +  K +        Y++L+     A+ + 
Sbjct: 463 KDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFS 522

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            A  L++ M      P   T N L+  L    ++   M ++  M      P   TY+IL+
Sbjct: 523 DAHLLFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILI 582

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
               R+ D +   M L Q    G  PN+V +   I    R+
Sbjct: 583 EEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQ 623



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 182/411 (44%), Gaps = 9/411 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVPN---PTLSTFNMLMS-V 101
           + E M ++G L  +  Y       C+  K I EA   FF++  +   P + T+ +L++  
Sbjct: 247 VFEIMPQEGCLRNEVSYTNLIHGFCEVGK-IDEALELFFQMKEDGCFPDVPTYTVLVAAF 305

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
           C   K++E A +    + E G++ +   YT LI    K GK+D   E+   M+  G+  +
Sbjct: 306 CEVGKETE-ALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSS 364

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
           V  + ALIDG  K G +  A      M+   V P+   +N LI    +  ++DRA  +L 
Sbjct: 365 VVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLN 424

Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
           +M    + + P+ +T   L+     A  VD A  ++ ++ K         +   I+C  +
Sbjct: 425 KMYE--NKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCK 482

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
            G  E A  V++ + +K    +E   +ALID    A K   A  + +    +G     I+
Sbjct: 483 MGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSIT 542

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           ++ L+         + A+ L + M     KPTV T   LI  +       +    L  M 
Sbjct: 543 FNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMI 602

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           S G  PN +TY+  + A  R+  +     ++ + KE+G++ +  ++  ++ 
Sbjct: 603 SSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVN 653



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 129/559 (23%), Positives = 225/559 (40%), Gaps = 79/559 (14%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK----- 75
           +   +++Y  LI    + G++ E +++L  M  KGL+     ++A     CK        
Sbjct: 326 IEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAI 385

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            + ++ +  K+ PN    T+N L+      K  + A  +L  + E  L  +   Y TLI 
Sbjct: 386 CVLDSMKLNKVCPNS--RTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIH 443

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K+  VD+ + + H M+  G  P+  T+ A ID   K G+V +A   +  ++ K+ + 
Sbjct: 444 GLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEA 503

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           +  ++ ALI    ++     A  +   M  E     P+ IT   L+      G+V+ A  
Sbjct: 504 NEFLYTALIDGYCKAEKFSDAHLLFKRMLFE--GCFPNSITFNVLLDGLRKEGKVEDAMS 561

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +  ++ K++ K T   YTI I    +  D++ A    D M   G  P+ V  +A I    
Sbjct: 562 LVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYC 621

Query: 316 HAGKVEAAFEILQEAKNQGI----------------------SVGII------------- 340
             G++  A E++ + K +GI                      + G++             
Sbjct: 622 RQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQ 681

Query: 341 SYSSL-------------MG--------ACSNAKNWQKA-----LELYEHMKSIKLKPTV 374
           +YS L             MG        +  NA  W+ A       L+E M      P V
Sbjct: 682 TYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNV 741

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           +T + LI  LC  + L     + + MK  G+ P+   ++ LL +C +    E  L LL  
Sbjct: 742 NTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDS 801

Query: 435 AKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492
             E   + +L  +K ++ G+  +   EKA  +   +LS   G    E  W  L   + R+
Sbjct: 802 MMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLS--CGYNYDEVVWKVLLDGLVRK 859

Query: 493 AIVAGTIPTVEVVSKVLGC 511
             V       +++ K  GC
Sbjct: 860 GYVDECSQLRDIMEKT-GC 877



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 150/352 (42%), Gaps = 5/352 (1%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N ++  C SS ++     VL L+           Y  L    ++ G +D +  +F +M+N
Sbjct: 127 NSMIKSCVSSHEARF---VLNLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLN 183

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G+EPN+ ++  +++   K G V  A   +  +       D   + +LI    +   +  
Sbjct: 184 DGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGD 243

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A+ V   M  E      + ++   L+      G++D A E++  + +         YT+ 
Sbjct: 244 AYKVFEIMPQE--GCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVL 301

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           +    + G    A   +++M + G+ P+    + LID+    GK++   E+L     +G+
Sbjct: 302 VAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGL 361

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              ++ +++L+         + A+ + + MK  K+ P   T N LI   C    + + M 
Sbjct: 362 VSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMA 421

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
           +L+ M    L PN +TY+ L+    +   V+    L     +DG +P+   F
Sbjct: 422 LLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTF 473


>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 426

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 170/405 (41%), Gaps = 51/405 (12%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           F+++C+   A     +  K+   P   T   L+     + + + A      V   G + D
Sbjct: 20  FYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKALHFHDDVIAKGFRLD 79

Query: 127 CKLYTTLITTCAKSGK----------------------VDAMFEVFHEMVNAGIEPNVHT 164
              Y TLI    KSG+                      VDA ++++ EMV   I P+V T
Sbjct: 80  NVSYGTLINGLCKSGETKAPDQFMYSMIINRLCKDKLVVDA-YDLYCEMVVKRIFPDVVT 138

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y  LI G    GQ+  A   +  MR KN+ P+   FN LI    + G V     VLA M 
Sbjct: 139 YNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMI 198

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
            +   V PD +T  +L+       + ++AR ++  + +  +      Y I IN  S+   
Sbjct: 199 KQ--SVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSKAKM 256

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            + A  ++ +M  K + PD +  S LID  G  G++   ++++ E +  G S  +I+YSS
Sbjct: 257 VDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSS 316

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM---- 400
           L+     + ++  A+ ++  +K    +P + T N L+  LC   +L    E+  D+    
Sbjct: 317 LLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKG 376

Query: 401 ----------------------KSLGLCPNTITYSILLVACERKD 423
                                 ++ G  PN +TY I++ A  + D
Sbjct: 377 YRLDVRLYTVMINGLCREALFDEAYGCTPNAVTYEIIIRALFKND 421



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 157/345 (45%), Gaps = 17/345 (4%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           AF VL  + + G + D    TTL+     + +V        +++  G   +  +YG LI+
Sbjct: 29  AFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKALHFHDDVIAKGFRLDNVSYGTLIN 88

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G  K+G+  KA             PD+ +++ +I    +   V  A+D+  EM   V  +
Sbjct: 89  GLCKSGE-TKA-------------PDQFMYSMIINRLCKDKLVVDAYDLYCEM--VVKRI 132

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD +T   L+      GQ++ A  ++  +   NI      + I I+   + GD +   S
Sbjct: 133 FPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKS 192

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V   M K+ V PD V  S+LID      K   A  I       G+++ + SY+ ++   S
Sbjct: 193 VLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLS 252

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            AK   +A+ L++ M+   + P   T + LI  L    ++    +++ +M++ G   N I
Sbjct: 253 KAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVI 312

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           TYS LL    +    +  + + ++ K+ G  PN+V +  ++ G+C
Sbjct: 313 TYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLC 357



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 134/327 (40%), Gaps = 40/327 (12%)

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +I IN         +A SV   + K G  PD V L+ L+       +V+ A     +   
Sbjct: 14  SILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKALHFHDDVIA 73

Query: 333 QGISVGIISYSSLM-GACSNA--------------------KNWQKALELYEHMKSIKLK 371
           +G  +  +SY +L+ G C +                     K    A +LY  M   ++ 
Sbjct: 74  KGFRLDNVSYGTLINGLCKSGETKAPDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIF 133

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P V T N LI   C   QL   + + ++M+   + PN  +++IL+    ++ DV+ G  +
Sbjct: 134 PDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSV 193

Query: 432 LSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL------NEHVLSFNSGRPQIEN--- 480
           L+   +  V P++V    +I      ++  KAR +      N   +   S    I     
Sbjct: 194 LAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSK 253

Query: 481 -KWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADAL 535
            K    A+++++E       P     S ++  L    ++ Y  D+ + +    G SA+ +
Sbjct: 254 AKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEM-RATGRSANVI 312

Query: 536 KRSNLCSLIDGFGEYDP--RAFSLLEE 560
             S+L +++   G +D   R F+ +++
Sbjct: 313 TYSSLLNVLCKSGHFDTAIRIFTKIKD 339



 Score = 38.9 bits (89), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 24/183 (13%)

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK 353
           M  +G+  D + LS LI+   H  ++  AF +L +    G     ++ ++L+ G C N +
Sbjct: 1   MELRGIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNE 60

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDG------DQLPKTM------------- 394
             +KAL  ++ + +   +    +   LI  LC        DQ   +M             
Sbjct: 61  -VKKALHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKAPDQFMYSMIINRLCKDKLVVD 119

Query: 395 --EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
             ++  +M    + P+ +TY+ L+        +E  + L ++ +   ++PN+  F  +I 
Sbjct: 120 AYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILID 179

Query: 452 GMC 454
           G+C
Sbjct: 180 GLC 182


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 120/497 (24%), Positives = 213/497 (42%), Gaps = 77/497 (15%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L ++G+I E ++L++ +   G+     VY+A   ++CK +K   EA   F    K+   P
Sbjct: 342 LRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRK-FHEAELLFDRMGKIGLRP 400

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-----------ADCKL---------- 129
              T+++L+ +       + A   L  + + GLK             CK           
Sbjct: 401 NDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFM 460

Query: 130 --------------YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
                         YT+L+      GK++    ++HEM   GI P+++T+  L+ G  +A
Sbjct: 461 AEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRA 520

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
           G +  A   +  M   NVKP+RV +N +I    + G + +AF+ L EM  +   + PD  
Sbjct: 521 GLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEK--GIVPDTY 578

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           +   L+      GQ   A+     +HK N +     YT  ++   + G  E A SV  +M
Sbjct: 579 SYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEM 638

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            ++GV  D V    LID +      +  F +L+E  ++G+    + Y+S++ A S   ++
Sbjct: 639 VQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDF 698

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALC------DGDQLPKTMEVLS----------- 398
           ++A  +++ M +    P   T  A+I  LC      + + L   M+ +S           
Sbjct: 699 KEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCF 758

Query: 399 ---------DMKSL---------GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
                    DM+           GL  NT TY++L+    R+  +E    L+++   DGV
Sbjct: 759 LDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGV 818

Query: 441 IPNLVMFKCIIGMCSRR 457
            P+ + +  +I    RR
Sbjct: 819 SPDCITYTTMINELCRR 835



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/438 (25%), Positives = 198/438 (45%), Gaps = 17/438 (3%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            ++ YN LI    + G IS     + +M  K L      Y +     C S+  I +A R 
Sbjct: 436 SVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYC-SKGKINKALRL 494

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           +  +      P++ TF  L+S    +     A ++   + E  +K +   Y  +I    +
Sbjct: 495 YHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCE 554

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G +   FE   EM   GI P+ ++Y  LI G    GQ ++A      +   N + + + 
Sbjct: 555 EGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEIC 614

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +  L+    + G ++ A  V  EM      VD D +  G L+              + K 
Sbjct: 615 YTGLLHGFCREGKLEEALSVCQEMVQ--RGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKE 672

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +H   +K    +YT  I+  S+TGD++ A  ++D M  +G +P+EV  +A+I+    AG 
Sbjct: 673 MHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGF 732

Query: 320 VEAAFEILQEAKNQGISV--GIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVST 376
           V  A E+L  +K Q +S     ++Y   +   +  + + QKA+EL+  +    L  T +T
Sbjct: 733 VNEA-EVLC-SKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANT-AT 789

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            N LI   C   ++ +  E+++ M   G+ P+ ITY+ ++    R++DV+  + L +   
Sbjct: 790 YNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMT 849

Query: 437 EDGVIPNLVMFKCIIGMC 454
           E G+ P+ V +  +I  C
Sbjct: 850 EKGIRPDRVAYNTLIHGC 867



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 173/397 (43%), Gaps = 10/397 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T + L+      +    A ++   +   G++ D  +YT +I +  +   +    E+
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M   G + N+  Y  LIDG  K  +V +A G    +  K++KPD V +  L+    +
Sbjct: 250 IAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCK 309

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
               +   +++ EM        P    + +L++     G+++ A  + K +  + +    
Sbjct: 310 VQEFEIGLEMMDEMLC--LRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNL 367

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   I+   +   +  A  ++D M K G+ P++V  S LID     GK++ A   L E
Sbjct: 368 FVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGE 427

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             + G+ + +  Y+SL+       +   A      M + KL+PTV T  +L+   C   +
Sbjct: 428 MVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGK 487

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + K + +  +M   G+ P+  T++ LL    R   +   + L ++  E  V PN V +  
Sbjct: 488 INKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNV 547

Query: 450 II-GMC-----SRRYEKARTLNEH--VLSFNSGRPQI 478
           +I G C     S+ +E  + + E   V    S RP I
Sbjct: 548 MIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLI 584



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 173/388 (44%), Gaps = 21/388 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVP 88
           L R G I + + L  +M    +      Y+      C+ +  + +AF F K      +VP
Sbjct: 517 LFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCE-EGDMSKAFEFLKEMTEKGIVP 575

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL----YTTLITTCAKSGKVD 144
           + T S   ++  +C + + SE      ++  +   K +C+L    YT L+    + GK++
Sbjct: 576 D-TYSYRPLIHGLCLTGQASEA-----KVFVDGLHKGNCELNEICYTGLLHGFCREGKLE 629

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               V  EMV  G++ ++  YG LIDG  K       FG    M  + +KPD V++ ++I
Sbjct: 630 EALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMI 689

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            A  ++G    AF +   M  E     P+ +T  A++     AG V+ A  +   +   +
Sbjct: 690 DAKSKTGDFKEAFGIWDLMINE--GCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVS 747

Query: 265 IKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
                  Y   ++  ++   D + A  +++ + K G++ +    + LI      G++E A
Sbjct: 748 SVPNQVTYGCFLDILTKGEVDMQKAVELHNAILK-GLLANTATYNMLIRGFCRQGRIEEA 806

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E++      G+S   I+Y++++       + +KA+EL+  M    ++P     N LI  
Sbjct: 807 SELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHG 866

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
            C   ++ K  E+ ++M   GL PN  T
Sbjct: 867 CCVAGEMGKATELRNEMLRQGLIPNNKT 894


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/458 (24%), Positives = 199/458 (43%), Gaps = 39/458 (8%)

Query: 67  FFNVCKSQKAIKEAFRF---FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
            +  C+  K  + A  F   +++  +P   ++  +++    S     AF +   +   G+
Sbjct: 363 LYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGI 422

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
             D    TT++    K GK     EVF  ++   + PN  TY AL+DG  K G++  A  
Sbjct: 423 SFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAEL 482

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
               M  ++V P+ + F+++I    + G + +A DVL EM      V P+ I    L+  
Sbjct: 483 VLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQ--RNVMPNTIVYAILIDG 540

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
              AG+ D A +  K +    ++ +  ++ I +N   + G  + A S+  DM  KG+ PD
Sbjct: 541 YFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPD 600

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
            V  ++LID     G   AA  I+QE K + I   +++Y++L+        +     +  
Sbjct: 601 IVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCS 659

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M  + L P   T N +I   C   +    +++L++MKS G+ PN +TY+IL+    +  
Sbjct: 660 RMIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKT- 718

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 483
                          G +P  +  K ++   SR  +  + L            QI  K  
Sbjct: 719 ---------------GFVPTPITHKFLVKAYSRSEKADKIL------------QIHEKLV 751

Query: 484 SLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 521
           +  L + R+ +V       E+V + +    + YNA IR
Sbjct: 752 ASGLELKRQKVVLD-----EMVKRGISADLVTYNALIR 784



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 141/362 (38%), Gaps = 78/362 (21%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           ++  L+    + G++D    +  +M + GI+P++  Y +LIDG  K G    A      M
Sbjct: 568 IFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEM 627

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           + KN++ D V +NALI    + G  D  + V + M  E+  + PD IT   ++      G
Sbjct: 628 KEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCSRM-IELG-LAPDCITYNTIINTYCIKG 684

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG------DWEFACSVY---------- 292
           + + A ++   +  Y I      Y I I    +TG        +F    Y          
Sbjct: 685 KTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGFVPTPITHKFLVKAYSRSEKADKIL 744

Query: 293 --------------------DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
                               D+M K+G+  D V  +ALI        VE A +   +   
Sbjct: 745 QIHEKLVASGLELKRQKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFV 804

Query: 333 QGISVGIISYSSLMGACSNAK--------------------------------------- 353
            GI+  I +Y++L+G  SNA                                        
Sbjct: 805 DGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVG 864

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           N +K + L+  M +    PT+ T N LI+      ++ +  E+L+D+ + G  PN+ TY 
Sbjct: 865 NRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYD 924

Query: 414 IL 415
           IL
Sbjct: 925 IL 926



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 118/532 (22%), Positives = 217/532 (40%), Gaps = 83/532 (15%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
            F +L  + + GL  D      L+    + G V     V + +V+ G+  +V     LID
Sbjct: 181 GFGLLSEMVKRGLCFDSITCNILVKGYCRIGLVQYAEWVMYNLVDGGVTKDVIGLNTLID 240

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM------- 223
           G  +A  +++A          +VK D V +N L+ A  ++G + RA  +  E+       
Sbjct: 241 GYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAESLFNEILGFWKDE 300

Query: 224 ----------NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
                       E+  + P  +T   L+ A      V+ +  +YK +    I   P+V T
Sbjct: 301 DRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMIMNGI--MPDVVT 358

Query: 274 ---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
              I    C   G    A  ++ +M + G+ P+ V  + +I+    +G+V  AF +  + 
Sbjct: 359 CSSILYGFCRH-GKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQM 417

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC----- 385
             +GIS  I++ +++M         ++A E++E +  + L P   T +AL+   C     
Sbjct: 418 VVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKM 477

Query: 386 ----------DGDQLP--------------------KTMEVLSDMKSLGLCPNTITYSIL 415
                     + + +P                    K ++VL +M    + PNTI Y+IL
Sbjct: 478 ELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAIL 537

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNS 473
           +    +  + +V      + K   +  + V+F  ++    R  R ++AR+L   + S   
Sbjct: 538 IDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYS-KG 596

Query: 474 GRPQIENKWTSLALMVYREAIVAGTIPTV-EVVSKVLGCLQLPYNADIR----------- 521
             P I N + SL    ++E      +  V E+  K +    + YNA I+           
Sbjct: 597 IDPDIVN-YASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPR 655

Query: 522 ---ERLVENLGVSADALKRSNLCSL--IDGFGEYDPRAFSLLEEAASFGIVP 568
               R++E LG++ D +  + + +   I G  E    A  +L E  S+GI+P
Sbjct: 656 YVCSRMIE-LGLAPDCITYNTIINTYCIKGKTE---DALDILNEMKSYGIMP 703



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 139/350 (39%), Gaps = 60/350 (17%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           GL      + TL+     SG V  +  ++ +M+  G+ P+V +   L+    K G +  A
Sbjct: 89  GLVPTLPFWNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLA 148

Query: 182 FGAYGIMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
            G    +R+ +V   D V +N +I    Q G VD+ F +L+EM      +  D IT   L
Sbjct: 149 LGY---LRNNDVVDIDNVTYNTVIWGFCQKGLVDQGFGLLSEMVK--RGLCFDSITCNIL 203

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           +K     G V                              Q  +W     V  ++   GV
Sbjct: 204 VKGYCRIGLV------------------------------QYAEW-----VMYNLVDGGV 228

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
             D + L+ LID    A  +  A E+++ +    + + I++Y++L+ A     +  +A  
Sbjct: 229 TKDVIGLNTLIDGYCEAVLMSQATELIENSWRSDVKIDIVTYNTLLKAFCKTGDLTRAES 288

Query: 361 LYEHM------------------KSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           L+  +                    IK L+PT+ T   LI A C    + ++  +   M 
Sbjct: 289 LFNEILGFWKDEDRLKNNDVVTQNEIKNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKMI 348

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             G+ P+ +T S +L    R   +    +L  +  E G+ PN V +  II
Sbjct: 349 MNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATII 398


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 179/370 (48%), Gaps = 11/370 (2%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P   T+N ++  +C   + +E A  +L  ++  GL  +   +  L+  C + G +     
Sbjct: 230 PDNITYNTILDGLCKKGRLNE-ARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAAN 288

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V   M    + P+  TY  +I G  K G++A+A      M +  + PD V +N LI  C 
Sbjct: 289 VIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCF 348

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
           + G+ +  F ++ EM  E   + P+ +T   ++K     G++D   EV K + K    G 
Sbjct: 349 EHGSSEEGFKLIEEM--EGRGMKPNSVTYNVMVKWFVKKGKMD---EVDKTVRKMEESGC 403

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P++  Y   I+   + G  + A  + D+M +KG+  D+V L+ ++       K++ A +
Sbjct: 404 LPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHD 463

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L  A+ +G  V  +SY +L+      +   +AL L++ MK  ++ P++ T N++I  LC
Sbjct: 464 LLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLC 523

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              +  + ++ L ++   GL P+ ITY+ ++    ++  VE      ++  E    P++V
Sbjct: 524 QMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVV 583

Query: 446 MFKCII-GMC 454
               ++ G+C
Sbjct: 584 TCNTLLCGLC 593



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 191/424 (45%), Gaps = 11/424 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++GR++E  DLL DM+ KGL      ++      C+    +KEA    +L+      P
Sbjct: 242 LCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCR-LGWLKEAANVIELMSQNSVVP 300

Query: 91  TLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
              T+N+++S  C   + +E A ++   ++   L  D   Y TLI  C + G  +  F++
Sbjct: 301 DAWTYNVMISGFCKQGRIAE-AMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKL 359

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G++PN  TY  ++    K G++ +       M      PD V +N LI+   +
Sbjct: 360 IEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCK 419

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D AF ++ EM  +   +  D +T+  +++A     ++D A ++     +       
Sbjct: 420 VGKMDEAFRLMDEMGRK--GLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDE 477

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I    +      A  ++D+M +K +IP  +  +++I      GK   A + L E
Sbjct: 478 VSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDE 537

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+    I+Y++++         +KA + +  M     KP V T N L+  LC    
Sbjct: 538 LLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGM 597

Query: 390 LPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           L K +++ +   S G   + ++Y +I+L  C+ K   E    LL + +E  + P+   + 
Sbjct: 598 LEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGE-AFDLLEEMEEKKLGPDCYTYN 656

Query: 449 CIIG 452
            I+G
Sbjct: 657 AILG 660



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/411 (23%), Positives = 177/411 (43%), Gaps = 42/411 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R G + E  +++E M +  ++     Y+      CK Q  I EA R  + + N    P +
Sbjct: 279 RLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCK-QGRIAEAMRLREEMENLKLSPDV 337

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+N L++ C     SE  F+++  ++  G+K +   Y  ++    K GK+D + +   +
Sbjct: 338 VTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRK 397

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M  +G  P++ TY  LI    K G++ +AF     M  K +K D V  N ++ A  +   
Sbjct: 398 MEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERK 457

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D A D+L       + VD   ++ G L+       +  +A  ++  + +  I  +   Y
Sbjct: 458 LDEAHDLLCSARRRGYFVD--EVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITY 515

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE------- 325
              I    Q G    A    D++ + G++PDE+  + +I      G+VE AF+       
Sbjct: 516 NSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVE 575

Query: 326 ---------------------ILQEAK-------NQGISVGIISYSSLMGACSNAKNWQK 357
                                +L++A        ++G  V  +SY++++ +    K + +
Sbjct: 576 KNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGE 635

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
           A +L E M+  KL P   T NA++  L D  ++    E +S +   G   N
Sbjct: 636 AFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSEN 686



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 109/249 (43%), Gaps = 8/249 (3%)

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA---NAGQVDRAREVYKMIHK 262
           ACG+     + F+ +  +  +     P  +T   L+ A     ++  +  ++ V+    K
Sbjct: 136 ACGRPHQAAQIFNRMKRLGMQ-----PTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIK 190

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             +K     + I I+       +  A  V   M   G  PD +  + ++D     G++  
Sbjct: 191 IGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNE 250

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A ++L + KN+G+     +++ L+  C      ++A  + E M    + P   T N +I+
Sbjct: 251 ARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMIS 310

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
             C   ++ + M +  +M++L L P+ +TY+ L+  C      E G  L+ + +  G+ P
Sbjct: 311 GFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKP 370

Query: 443 NLVMFKCII 451
           N V +  ++
Sbjct: 371 NSVTYNVMV 379


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 169/386 (43%), Gaps = 7/386 (1%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+  ++   A +K  + A  ++  +   G       Y  L+    K G+++   ++  
Sbjct: 34  IHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 93

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           ++V+ G  P+V TY +LIDG  K  +  +A+  +  M S+ +  D V + ALI    Q+G
Sbjct: 94  KIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAG 153

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            + +A  V   M ++     PD +T+  ++     AG++  A  ++K +    +     V
Sbjct: 154 KIPQASSVYKTMTSQ--GCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVV 211

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y+  I+   +    + A  +   M K    PD +  + LID    +G V AA     E  
Sbjct: 212 YSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEML 271

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G    + +Y+ L+     A N   A  +++ M S +  P V T   LI+ LC   QL 
Sbjct: 272 EAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLT 331

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           K       MK  G  P++  YS L+    +   +E G ML  + +  GV  +    + I 
Sbjct: 332 KASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIF 391

Query: 452 GMCSRRYEKARTLNEHVLSFNSGRPQ 477
            +C     KA  ++E V  FN+ R +
Sbjct: 392 HLC-----KANRVDEAVSLFNAIRKE 412



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 188/410 (45%), Gaps = 17/410 (4%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +H+Y  ++    +  +I E + L+E +   G       Y+A    +CK  + ++EA    
Sbjct: 34  IHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGR-LEEAIDLL 92

Query: 85  -KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            K+V N   P + T+  L+      K S  A+++ + +   GL  D   YT LI    ++
Sbjct: 93  RKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQA 152

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK+     V+  M + G  P+V T   +IDG  KAG++  A   +  M ++ + P+ VV+
Sbjct: 153 GKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVY 212

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +ALI    ++  +D A ++LA+M        PD IT   L+     +G V  AR  +  +
Sbjct: 213 SALIHGLCKARKMDCALEMLAQMKKAF--CTPDTITYNILIDGLCKSGDVAAARAFFDEM 270

Query: 261 HKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +   K  P+VYT  I I+   + G+ + AC V+DDM+     P+ V    LI       
Sbjct: 271 LEAGCK--PDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRR 328

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           ++  A    Q  K +G       YSSL+     +   +    L++ M+   +  +  T  
Sbjct: 329 QLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANS-QTRT 387

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            LI  LC  +++ + + + + ++  G+ P+   Y+ ++ A  +   V  G
Sbjct: 388 RLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEG 436



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 10/344 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           ++ LI    K+G +     +  E    G   ++HTY  ++D  AK  ++ +A      + 
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           +    P    +NAL+    + G ++ A D+L ++    +   PD +T  +L+      G+
Sbjct: 62  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD--NGCTPDVVTYTSLIDG---LGK 116

Query: 250 VDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
             R+ E YK+  +   +G       YT  I    Q G    A SVY  MT +G +PD V 
Sbjct: 117 KKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVT 176

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           LS +ID    AG++ AA  I +  + +G++   + YS+L+     A+    ALE+   MK
Sbjct: 177 LSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 236

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
                P   T N LI  LC    +        +M   G  P+  TY+IL+    +  + +
Sbjct: 237 KAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTD 296

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR-YEKARTLNEHV 468
               +          PN+V +  +I G+C RR   KA    +H+
Sbjct: 297 AACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHM 340



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 12/350 (3%)

Query: 112 FQVLRLVQEA---GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
            Q   L QE    G   D   YTT++   AK+ K+     +  ++   G  P + TY AL
Sbjct: 16  IQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNAL 75

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           ++G  K G++ +A      +      PD V + +LI   G+      A+ +  EM +   
Sbjct: 76  LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGL 135

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWE 286
            +D   +   AL++    AG++ +A  VYK +        P+V T++  I+   + G   
Sbjct: 136 ALDT--VCYTALIRGLLQAGKIPQASSVYKTMTSQGC--VPDVVTLSTMIDGLCKAGRIG 191

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A  ++  M  +G+ P+EV  SALI     A K++ A E+L + K    +   I+Y+ L+
Sbjct: 192 AAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 251

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                + +   A   ++ M     KP V T N LI+  C          V  DM S    
Sbjct: 252 DGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCS 311

Query: 407 PNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           PN +TY  L+   C+R+   +  L      KE G  P+  ++  ++ G+C
Sbjct: 312 PNVVTYGTLISGLCKRRQLTKASL-YYQHMKERGCPPDSFVYSSLVDGLC 360



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 119/264 (45%), Gaps = 7/264 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L + GRI   + + + ME +GL   + VY A    +CK++K   A++   +  K    P 
Sbjct: 184 LCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 243

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+N+L+     S D   A      + EAG K D   Y  LI+   K+G  DA   VF 
Sbjct: 244 TITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFD 303

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M ++   PNV TYG LI G  K  Q+ KA   Y  M+ +   PD  V+++L+    +SG
Sbjct: 304 DMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSG 363

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++    +  EM  E   V         +   C  A +VD A  ++  I K  +   P  
Sbjct: 364 KLEGGCMLFDEM--ERSGVANSQTRTRLIFHLC-KANRVDEAVSLFNAIRKEGMP-HPYA 419

Query: 272 YTIAINCCSQTGDWEFACSVYDDM 295
           Y   I+   ++G      +VY +M
Sbjct: 420 YNSIISALIKSGKVNEGQAVYQEM 443


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/482 (22%), Positives = 208/482 (43%), Gaps = 54/482 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---- 73
           A  V    ++Y  ++R    +GRI++ + +L++M  +  + +  +YH    + C+S    
Sbjct: 109 AVPVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYS 168

Query: 74  ------------------------------QKAIKEAFRFFKLVP----NPTLSTFN-ML 98
                                         Q  + E     + +P       + ++N +L
Sbjct: 169 SALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVL 228

Query: 99  MSVCASSK--DSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEV 149
             +CA+ +  D E     +  V EA       G   D ++Y T+I    K G  +   E+
Sbjct: 229 KGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEI 288

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M + G++PNV  Y  ++ G   A +  KA      M  KN   D V FN L+    Q
Sbjct: 289 LSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQ 348

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G VDR  ++L +M    H   PD IT   ++      G +D A  + K +     K   
Sbjct: 349 NGLVDRVIELLEQMLE--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNT 406

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YTI +     T  W  A  +   M ++G +P+ V  + +I+F    G VE A E+L++
Sbjct: 407 ISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQ 466

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G +  +ISYS+++     A   ++ALEL   M +  + P V T +++  AL    +
Sbjct: 467 MLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGR 526

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + K +++  +++   +  + + Y+ ++ +  ++ + ++ +  L+    +G +PN   +  
Sbjct: 527 IDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTA 586

Query: 450 II 451
           +I
Sbjct: 587 LI 588



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 164/391 (41%), Gaps = 23/391 (5%)

Query: 31  SYNRLI-------RQGRISECID-------LLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           SYN ++       R G + E +D        L  M + G     ++Y      +CK    
Sbjct: 223 SYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHH 282

Query: 77  IKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            + A      +P+    P +  +N ++    S+   E A ++L  + +     D   +  
Sbjct: 283 -EVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNI 341

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+    ++G VD + E+  +M+  G  P+V TY  +I+G  K G + +A      M S  
Sbjct: 342 LVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCG 401

Query: 193 VKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
            KP+ + +  ++   C     VD A ++++ M  +     P+ +T   ++      G V+
Sbjct: 402 CKPNTISYTIVLKGLCSTERWVD-AEELMSRMIQQ--GCLPNPVTFNTIINFLCKKGLVE 458

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +A E+ K +           Y+  I+   + G  E A  + + M  KG+ P+ +  S++ 
Sbjct: 459 QAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMA 518

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                 G+++   ++    ++  I    + Y++++ +    +    A++   +M S    
Sbjct: 519 FALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCM 578

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           P  ST  ALI  L     L +  ++LS++ S
Sbjct: 579 PNESTYTALIKGLASEGLLCEAQDLLSELCS 609


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 161/341 (47%), Gaps = 7/341 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L+S        + A Q+L  +++ G++   K+YT L+    K   V     +
Sbjct: 228 PDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSL 287

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM +    P+V TY  LI G  KAG++ +A+  +  M+ +  +PD +V N +I   G+
Sbjct: 288 FEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGK 347

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV---YKMIHKYNIK 266
           +G +D A  +  EM        P  +T   ++KA   +    RA EV   ++ + +  I 
Sbjct: 348 AGRLDDAMKLFQEMGT--LRCIPSVVTYNTIIKALFESK--SRASEVPSWFERMKESGIS 403

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            +   Y+I I+   +T   E A  + ++M +KG  P      +LID  G A + + A E+
Sbjct: 404 PSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACEL 463

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            QE K    S     Y+ ++     A     A+ +++ M  +   P V   NAL++ L  
Sbjct: 464 FQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLAR 523

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
              L + +  +  M+  G  P+  +Y+I+L   ++++D+ V
Sbjct: 524 TGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQKQEDLIV 564



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 103/490 (21%), Positives = 185/490 (37%), Gaps = 77/490 (15%)

Query: 3   DGGKNM-LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK 61
           D G N+ +QF     K  NY HD S    +Y  LI       C++++E            
Sbjct: 100 DIGVNVKMQFFRWAAKRRNYEHDTS----TYMALI------HCLEVVE------------ 137

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
                     +  K I+E  R    V  PT    + ++ +  ++K    A  +   ++  
Sbjct: 138 -------QYGEMWKMIQEMVRNPICVVTPT--ELSEVVRMLGNAKMVSKAIAIFYQIKTR 188

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAK 180
             +   + Y ++I      G+ + + E+++EM   G   P+  TY ALI    K G+   
Sbjct: 189 KCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDS 248

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A      M+   ++P   ++  L+    +   V  A  +  EM  +     PD  T   L
Sbjct: 249 AIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQY--CRPDVFTYTEL 306

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           ++    AG++D A   +  + +   +    V    IN   + G  + A  ++ +M     
Sbjct: 307 IRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRC 366

Query: 301 IPDEV----FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           IP  V     + AL +    A +V + FE ++E+   GIS    +YS L+         +
Sbjct: 367 IPSVVTYNTIIKALFESKSRASEVPSWFERMKES---GISPSSFTYSILIDGFCKTNRME 423

Query: 357 KALELYEHMKSIKLKPTVSTMNALITAL---------CD--------------------- 386
           KA+ L E M      P  +   +LI AL         C+                     
Sbjct: 424 KAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMI 483

Query: 387 -----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
                  +L   + +  +M  LG  P+   Y+ L+    R   ++  L  + + +E G I
Sbjct: 484 KHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCI 543

Query: 442 PNLVMFKCII 451
           P++  +  I+
Sbjct: 544 PDINSYNIIL 553


>gi|167998294|ref|XP_001751853.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162696951|gb|EDQ83288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 657

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 167/399 (41%), Gaps = 37/399 (9%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           PN  L     L++V  +S+D      ++ +V E GL+ D +    ++    +    DA  
Sbjct: 134 PNDKLHNLAKLVAVRVASEDLGSDEDIMGVVHETGLRVDVRSMNVVVWQLGQMRNWDAAS 193

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            VF    +A +EPN H    LI       ++ +A   +  M  + ++     FNAL+ AC
Sbjct: 194 RVFRAFRSASVEPNAHVCTTLIAVLGYGRRLPEALKLFRWMEKQGIERPIYTFNALMVAC 253

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-------------- 253
           G+ GA D A ++  EM      + PD+IT   L+ A   AG+   A              
Sbjct: 254 GRCGAGDTAVELFEEMKE--LGLAPDNITFRGLVSATTAAGKWKAAQSFINLMQAGGFSF 311

Query: 254 ------------------REVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVY 292
                             RE   ++     +G     E Y   +    +T +WE A    
Sbjct: 312 AIGEFTEMQWACARARNSRESLGLLQAMIEQGCEPRLENYNALLCAYEKTANWEEAVRTV 371

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
             + +KG  PD +  S+L+    +AG+ E A  ++++ K    +  ++S+  L+ A    
Sbjct: 372 VWIQEKGFTPDFITWSSLLGACANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKT 431

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            NW+K  E++  M +    P     N+L++A   G Q  + +  +   + LG+  + + +
Sbjct: 432 GNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEKGRQWKRVLYTIEKQEELGVKLDVVAW 491

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           S  + A  +    ++    + Q K+ G  PN+V +  +I
Sbjct: 492 STTISALAKAGQWQLAEKKIRQMKQSGCQPNIVTYSSLI 530



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 166/387 (42%), Gaps = 11/387 (2%)

Query: 75  KAIKEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           + + EA + F+ +    +     TFN LM  C      + A ++   ++E GL  D   +
Sbjct: 222 RRLPEALKLFRWMEKQGIERPIYTFNALMVACGRCGAGDTAVELFEEMKELGLAPDNITF 281

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             L++    +GK  A     + M   G    +  +  +   CA+A    ++ G    M  
Sbjct: 282 RGLVSATTAAGKWKAAQSFINLMQAGGFSFAIGEFTEMQWACARARNSRESLGLLQAMIE 341

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           +  +P    +NAL+ A  ++   + A   +  +  +     PD IT  +L+ ACANAGQ 
Sbjct: 342 QGCEPRLENYNALLCAYEKTANWEEAVRTVVWIQEK--GFTPDFITWSSLLGACANAGQA 399

Query: 251 DRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           ++A  V + + + N   TP V  +   +    +TG+WE    ++  M   G  P+EV  +
Sbjct: 400 EKAVAVMEKMKENNF--TPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWN 457

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           +L+       + +     +++ +  G+ + ++++S+ + A + A  WQ A +    MK  
Sbjct: 458 SLLSAYEKGRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQS 517

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE-V 427
             +P + T ++LI A  D     K   V   M   G+ P++     LL A  +   ++ V
Sbjct: 518 GCQPNIVTYSSLIKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKV 577

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMC 454
                S     G+ P+   +  I   C
Sbjct: 578 MFFFDSMMPRYGIKPDKYAYAAIFWAC 604



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 127/312 (40%), Gaps = 3/312 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L  +N L+     + + E A + +  +QE G   D   +++L+  CA +G+ +    V
Sbjct: 346 PRLENYNALLCAYEKTANWEEAVRTVVWIQEKGFTPDFITWSSLLGACANAGQAEKAVAV 405

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M      PNV ++  L+    K G   K    +  M +    P+ V +N+L++A  +
Sbjct: 406 MEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEIFHSMLNSGCPPNEVAWNSLLSAYEK 465

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
                R    + +   E   V  D +     + A A AGQ   A +  + + +   +   
Sbjct: 466 GRQWKRVLYTIEKQ--EELGVKLDVVAWSTTISALAKAGQWQLAEKKIRQMKQSGCQPNI 523

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA-FEILQ 328
             Y+  I      G W  A SV+  M  +G+ PD     AL+       +++   F    
Sbjct: 524 VTYSSLIKAYGDVGLWNKAESVFKSMLLEGIRPDSKACCALLRAYAKGRQLDKVMFFFDS 583

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
                GI     +Y+++  AC     WQ+A +  E+M++    P       LIT      
Sbjct: 584 MMPRYGIKPDKYAYAAIFWACWTCGEWQRAADYMENMEAAGCTPDTMIYTTLITMYEAHG 643

Query: 389 QLPKTMEVLSDM 400
           Q+ K ME+L  M
Sbjct: 644 QVDKAMEILKKM 655



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 38/279 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L+  CA++  +E A  V+  ++E     +   +  L+    K+G  +   E+
Sbjct: 381 PDFITWSSLLGACANAGQAEKAVAVMEKMKENNFTPNVVSWCYLLKAYQKTGNWEKTEEI 440

Query: 150 FHEMVNAGIEPN-----------------------------------VHTYGALIDGCAK 174
           FH M+N+G  PN                                   V  +   I   AK
Sbjct: 441 FHSMLNSGCPPNEVAWNSLLSAYEKGRQWKRVLYTIEKQEELGVKLDVVAWSTTISALAK 500

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
           AGQ   A      M+    +P+ V +++LI A G  G  ++A  V   M  E   + PD 
Sbjct: 501 AGQWQLAEKKIRQMKQSGCQPNIVTYSSLIKAYGDVGLWNKAESVFKSMLLE--GIRPDS 558

Query: 235 ITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
               AL++A A   Q+D+    +  M+ +Y IK     Y      C   G+W+ A    +
Sbjct: 559 KACCALLRAYAKGRQLDKVMFFFDSMMPRYGIKPDKYAYAAIFWACWTCGEWQRAADYME 618

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +M   G  PD +  + LI      G+V+ A EIL++  N
Sbjct: 619 NMEAAGCTPDTMIYTTLITMYEAHGQVDKAMEILKKMDN 657


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 186/404 (46%), Gaps = 12/404 (2%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++  LIR    + ++ + + L + + R+ + + ++V +    N    +   ++AF   +L
Sbjct: 144 TFTTLIRGLFAENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRL 203

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+ +++         +GA  +L  +++  +  D   Y+TLI    K  +
Sbjct: 204 MEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQ 263

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            + +  +F EM++  I PNV T+ ++IDG  K G+V  A      M  K V PD + +N 
Sbjct: 264 WENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNM 323

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I   G  G VDRA ++   M  +   ++PD I+   L+   A   ++D A +V + I +
Sbjct: 324 IIDGYGLRGQVDRAREIFDSMINK--SIEPDIISYNILINGYARQKKIDEAMQVCREISQ 381

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             +K +     + ++   + G  + A + +D+M   G IPD      L+      G VE 
Sbjct: 382 KGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEE 441

Query: 323 AFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           A     + + +     I  Y++++ G C N K   KA   +E +  I L P V T  A+I
Sbjct: 442 AMSHFHKLERRREDTNIQIYTAVIDGLCKNGK-LDKAHATFEKLPLIGLHPDVITYTAMI 500

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           +  C    L +  ++L  M+  G   +  TY++++    R + V
Sbjct: 501 SGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKV 544



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 175/384 (45%), Gaps = 7/384 (1%)

Query: 73  SQKAIKEAFRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           ++  +K+A   FK      +  P    +  +M+       ++ AF +LRL+++   K + 
Sbjct: 154 AENKVKDAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNT 213

Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
           + YT +I    K G +D    + +EM    I P++ TY  LID   K  Q       +  
Sbjct: 214 RTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLE 273

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M   N+ P+   FN++I    + G V+ A +++  M  +   VDPD IT   ++      
Sbjct: 274 MIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEK--GVDPDVITYNMIIDGYGLR 331

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           GQVDRARE++  +   +I+     Y I IN  ++    + A  V  ++++KG+ P  V  
Sbjct: 332 GQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTC 391

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + L+      G+ ++A     E  + G    + ++ +L+G        ++A+  +  ++ 
Sbjct: 392 NVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLER 451

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
            +    +    A+I  LC   +L K       +  +GL P+ ITY+ ++    ++  ++ 
Sbjct: 452 RREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDE 511

Query: 428 GLMLLSQAKEDGVIPNLVMFKCII 451
              +L + +++G + +   +  I+
Sbjct: 512 AKDMLRKMEDNGCLADNRTYNVIV 535



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 164/363 (45%), Gaps = 6/363 (1%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
            +++++ C     ++  F VL +  + G+  +   +TTLI       KV     +F ++V
Sbjct: 110 LSIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLV 169

Query: 155 NAGI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              I EPN   YG +++G  K G   KAF    +M   + KP+   +  +I A  + G +
Sbjct: 170 RENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGML 229

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVY 272
           D A  +L EM  +  P  PD  T   L+ A     Q +  R ++ +MIH  NI      +
Sbjct: 230 DGATSLLNEMKQKSIP--PDIFTYSTLIDALCKLSQWENVRTLFLEMIH-LNIYPNVCTF 286

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+   + G  E A  +   M +KGV PD +  + +ID  G  G+V+ A EI     N
Sbjct: 287 NSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMIN 346

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           + I   IISY+ L+   +  K   +A+++   +    LKP++ T N L+  L +  +   
Sbjct: 347 KSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFELGRTKS 406

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
                 +M S G  P+  T+  LL    +   VE  +    + +      N+ ++  +I 
Sbjct: 407 AQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVID 466

Query: 452 GMC 454
           G+C
Sbjct: 467 GLC 469



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 132/316 (41%), Gaps = 3/316 (0%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D  F +F +MV     P+V ++  L+         +     +  +    +     + + 
Sbjct: 53  LDDAFSLFRQMVRTKPLPSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           ++ +C      D  F VLA    +  P   + +T   L++      +V  A  ++K + +
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPY--NEVTFTTLIRGLFAENKVKDAVHLFKKLVR 170

Query: 263 YNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
            NI    EV Y   +N   + G  + A  +   M +    P+    + +ID     G ++
Sbjct: 171 ENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLD 230

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +L E K + I   I +YS+L+ A      W+    L+  M  + + P V T N++I
Sbjct: 231 GATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVI 290

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   ++    E++  M   G+ P+ ITY++++     +  V+    +        + 
Sbjct: 291 DGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIE 350

Query: 442 PNLVMFKCIIGMCSRR 457
           P+++ +  +I   +R+
Sbjct: 351 PDIISYNILINGYARQ 366



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 111/272 (40%), Gaps = 14/272 (5%)

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +D AF +  +M     P+ P   +   L+KA  +         +++ IHK  I     + 
Sbjct: 53  LDDAFSLFRQM-VRTKPL-PSVASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFIL 110

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +I +N C      +   SV     KKG+  +EV  + LI       KV+ A  + ++   
Sbjct: 111 SIVVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVR 170

Query: 333 QGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           + I     + Y ++M       + QKA +L   M+    KP   T   +I A C    L 
Sbjct: 171 ENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTRTYTIVIDAFCKDGMLD 230

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               +L++MK   + P+  TYS L+ A  +    E    L  +     + PN+  F  +I
Sbjct: 231 GATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTFNSVI 290

Query: 452 -GMCSR----------RYEKARTLNEHVLSFN 472
            G+C            RY   + ++  V+++N
Sbjct: 291 DGLCKEGKVEDAEEIMRYMIEKGVDPDVITYN 322



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 94/241 (39%), Gaps = 19/241 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFR 82
           SYN LI    RQ +I E + +  ++ +KGL    +  + + H  F          K A  
Sbjct: 355 SYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLF-----ELGRTKSAQN 409

Query: 83  FFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           FF  + +    P L T   L+     +   E A      ++      + ++YT +I    
Sbjct: 410 FFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVIDGLC 469

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K+GK+D     F ++   G+ P+V TY A+I G  + G + +A      M       D  
Sbjct: 470 KNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNR 529

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +N ++    +S  V      L E+  +    +    T+  LM   A    + R     K
Sbjct: 530 TYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEA--ATVELLMDIIAEDPSITRKMHWIK 587

Query: 259 M 259
           +
Sbjct: 588 L 588


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 154/321 (47%), Gaps = 7/321 (2%)

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
           G F  L+  Q  G K D   YTT++    ++ +  A+ ++  +MV  G +P V TY  LI
Sbjct: 323 GFFHWLK--QLPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLI 380

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
               +A  +  A   +  M+    +PDRV +  LI    ++G ++ A ++   M A    
Sbjct: 381 HSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAA--G 438

Query: 230 VDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
           + PD  T   ++     AG +  A +++ +MI +  +      Y I I   ++  +++ A
Sbjct: 439 LSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNL-VTYNIMIALQAKARNYQNA 497

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             +Y DM   G  PD+V  S +++  GH+G ++ A  I  E K +        Y  L+  
Sbjct: 498 LKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLLVDL 557

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              A N +KA E Y+ M    L P V T N+L++A    ++LP    +L  M +LGL P+
Sbjct: 558 WGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLGLNPS 617

Query: 409 TITYSILLVAC-ERKDDVEVG 428
             TY++LL  C E +   ++G
Sbjct: 618 LQTYTLLLSCCTEARSPYDMG 638



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 146/312 (46%), Gaps = 5/312 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ T+N L+     +     A +V   +Q+AG + D   Y TLI   AK+G ++   E+
Sbjct: 371 PTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEM 430

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M  AG+ P+  TY  +I+   KAG +A A   +  M  +   P+ V +N +I    +
Sbjct: 431 YQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAK 490

Query: 210 SGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +     A  +  +M NA     +PD +T   +M+   ++G +D A  ++  + + N    
Sbjct: 491 ARNYQNALKLYRDMQNAG---FEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPD 547

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             VY + ++   + G+ E A   Y  M   G+ P+    ++L+       ++  A+ +LQ
Sbjct: 548 EPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQ 607

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
              N G++  + +Y+ L+  C+ A++    +  Y  + S+   P    +++L +A  DG 
Sbjct: 608 SMLNLGLNPSLQTYTLLLSCCTEARS-PYDMGCYCELMSVTGHPAHMFLSSLPSAGPDGQ 666

Query: 389 QLPKTMEVLSDM 400
            +   +    DM
Sbjct: 667 NVRHHVSKFLDM 678



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 96/213 (45%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P  +T   L+ +   A  ++ A EV+  + K   +     Y   I+  ++ G   FA  +
Sbjct: 371 PTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEM 430

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           Y  M   G+ PD    S +I+  G AG + AA ++  E   QG    +++Y+ ++   + 
Sbjct: 431 YQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAK 490

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A+N+Q AL+LY  M++   +P   T + ++  L     L +   + S+MK     P+   
Sbjct: 491 ARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPV 550

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           Y +L+    +  +VE            G+ PN+
Sbjct: 551 YGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNV 583



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 137/290 (47%), Gaps = 16/290 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YNRLI    R   +++ +++   M++ G  + D+V +    ++      +  A   ++ 
Sbjct: 375 TYNRLIHSYGRANYLNDAVEVFNQMQKAGC-EPDRVTYCTLIDIHAKAGFLNFAMEMYQR 433

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P   T++++++    +     A ++   + E G   +   Y  +I   AK+  
Sbjct: 434 MQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARN 493

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
                +++ +M NAG EP+  TY  +++    +G + +A   +  M+ KN  PD  V+  
Sbjct: 494 YQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGL 553

Query: 203 LITACGQSGAVDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           L+   G++G V++A++   A ++A + P  P   T  +L+ A     ++  A  + + + 
Sbjct: 554 LVDLWGKAGNVEKAWEWYQAMLHAGLCPNVP---TCNSLLSAFLRVNRLPDAYNLLQSML 610

Query: 262 KYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIPDEVFLSAL 310
              +  + + YT+ ++CC++    ++  C  Y ++      P  +FLS+L
Sbjct: 611 NLGLNPSLQTYTLLLSCCTEARSPYDMGC--YCELMSVTGHPAHMFLSSL 658


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/493 (21%), Positives = 202/493 (40%), Gaps = 47/493 (9%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV 62
           D  K +L + +  G    ++ DV       N L + G +S+ + L ++M  +G+      
Sbjct: 141 DKAKELLNWMWGQG----FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVAC 196

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPT----LSTFN-MLMSVCASSKDSEGAFQVLRL 117
           Y+       K    +  +  + +L+  P+    + ++N M+  +C   K  E +F++   
Sbjct: 197 YNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDE-SFEIWHR 255

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +++     D   Y+TLI     SG +D    V+ EM   G+ P+V  Y  +++G  +AG+
Sbjct: 256 MKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGR 315

Query: 178 VAKAFGAYGIMRSKNVKP----------------------------------DRVVFNAL 203
           + +    + +M  +  +                                   D + +  L
Sbjct: 316 IEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVL 375

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +    ++G +++A  +L E  AE    D D     +++      G++D    V   + K+
Sbjct: 376 VHGLCKNGYLNKALSILEE--AENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKH 433

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             K  P V    IN   +    E A   + +M  KG  P  V  + LI+    A +   A
Sbjct: 434 GCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEA 493

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           + +++E   +G    +I+YS LM      K    AL L+        KP V   N +I  
Sbjct: 494 YALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHG 553

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++   +++ S+MK     PN +T++ L+    +  D E    +     + G+ P+
Sbjct: 554 LCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPD 613

Query: 444 LVMFKCII-GMCS 455
           ++ +   + G+CS
Sbjct: 614 IISYNITLKGLCS 626



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 184/446 (41%), Gaps = 72/446 (16%)

Query: 81  FRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F +F+ +  +P L T+N+L+ +    K  + A ++L  +   G   D   Y TLI + AK
Sbjct: 112 FLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAK 171

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRV 198
           +G +    ++F EM   G+ P+V  Y  LIDG  K G +  A   +  +++  +V P+  
Sbjct: 172 NGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIP 231

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAE------------VH------------------ 228
            +N +I    + G  D +F++   M               +H                  
Sbjct: 232 SYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEM 291

Query: 229 ---PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
               V PD +    ++     AG+++   E++K++ K   + T   Y I I    +    
Sbjct: 292 AENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKV 350

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           + A S+++ + +K    D +    L+      G +  A  IL+EA+N    +   +YSS+
Sbjct: 351 DEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSM 410

Query: 346 M-GACS----------------------------------NAKNWQKALELYEHMKSIKL 370
           + G C                                    A   + AL  + +M S   
Sbjct: 411 INGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGC 470

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            PTV T N LI  L   ++  +   ++ +M   G  PN ITYS+L+    +   +++ L 
Sbjct: 471 FPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALN 530

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMCS 455
           L  QA E G  P++ M   II G+CS
Sbjct: 531 LWCQALEKGFKPDVKMHNIIIHGLCS 556



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 167/391 (42%), Gaps = 49/391 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKG---LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89
           N  +R GRI EC++L + ME++G   ++  + +    F N       + EA   ++L+P 
Sbjct: 308 NGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENA-----KVDEAISIWELLPE 362

Query: 90  PTLSTFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
                 +M   V        G    A  +L   +      D   Y+++I    + G++D 
Sbjct: 363 KDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDE 422

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
           +  V  +M   G +PN +   A+I+G  +A ++  A   +G M SK   P  V +N LI 
Sbjct: 423 VAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLIN 482

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              ++     A+ ++ EM  +     P+ IT   LM       ++D              
Sbjct: 483 GLSKAERFSEAYALVKEMLQK--GWKPNMITYSLLMNGLCQGKKLD-------------- 526

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                   +A+N   Q               +KG  PD    + +I     +GKVE A +
Sbjct: 527 --------MALNLWCQA-------------LEKGFKPDVKMHNIIIHGLCSSGKVEDALQ 565

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +  E K +     ++++++LM      +++++A ++++H+    L+P + + N  +  LC
Sbjct: 566 LYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLC 625

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
              ++   +  L+D    G+ P  IT++IL+
Sbjct: 626 SCHRISDAVGFLNDAVDRGVLPTAITWNILV 656



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 157/357 (43%), Gaps = 8/357 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + ++N L++    S   + A       +  GL  + + Y  LI    +  + D   E+
Sbjct: 87  PGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKEL 146

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + M   G  P+V +YG LI+  AK G ++ A   +  M  + V PD   +N LI    +
Sbjct: 147 LNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFK 206

Query: 210 SGAVDRAFDVLAEM--NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            G +  A ++   +     V+P  P +     ++      G+ D + E++  + K     
Sbjct: 207 KGDILNASEIWERLLKGPSVYPNIPSY---NVMINGLCKCGKFDESFEIWHRMKKNERGQ 263

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y+  I+    +G+ + A  VY +M + GV PD V  + +++    AG++E   E+ 
Sbjct: 264 DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELW 323

Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           +  + +G    ++SY+ L+ G   NAK   +A+ ++E +          T   L+  LC 
Sbjct: 324 KVMEKEGCRT-VVSYNILIRGLFENAKV-DEAISIWELLPEKDCCADSMTYGVLVHGLCK 381

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
              L K + +L + ++     +T  YS ++    R+  ++    +L Q  + G  PN
Sbjct: 382 NGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPN 438



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 143/341 (41%), Gaps = 5/341 (1%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
           R+ +  G +   + Y +L+    +S K D     F      G+ PN+ TY  LI    + 
Sbjct: 78  RMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRK 137

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            Q  KA      M  +   PD   +  LI +  ++G +  A  +  EM      V PD  
Sbjct: 138 KQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPER--GVTPDVA 195

Query: 236 TIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
               L+      G +  A E++ +++   ++      Y + IN   + G ++ +  ++  
Sbjct: 196 CYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHR 255

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K     D    S LI     +G ++ A  + +E    G+S  ++ Y++++     A  
Sbjct: 256 MKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGR 315

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++ LEL++ M+    + TV + N LI  L +  ++ + + +   +     C +++TY +
Sbjct: 316 IEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGV 374

Query: 415 LLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454
           L+    +   +   L +L +A+   G +        I G+C
Sbjct: 375 LVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLC 415



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 357 KALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           +AL++++ M  I   +P + + N+L+ AL + ++  +        +++GL PN  TY+IL
Sbjct: 71  QALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNIL 130

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +    RK   +    LL+     G  P++  +  +I
Sbjct: 131 IKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLI 166


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 200/432 (46%), Gaps = 16/432 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L +  +    +  L DME KG+   D V +    N    +  ++EAF+      +   
Sbjct: 265 NALCKDRKFENVMFFLSDMEGKGVF-ADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGM 323

Query: 90  -PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P L T+N +L  +C   K       ++ ++Q  GL  +   Y TL+    +   +    
Sbjct: 324 EPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQ-LGLTPNAATYNTLLVEICRRDNILEAQ 382

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E+F EM   G+ P++ ++ +LI   A+ G + +A   +  M    + PD V++  LI   
Sbjct: 383 EIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGF 442

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIK 266
            ++GA+  A  +  EM A    +D   +T    +   C      D      +M+ +  + 
Sbjct: 443 CRNGALSDALKMRDEMLARGCFMDV--VTYNTFLNGLCKKKMFADADMLFNEMVERGMV- 499

Query: 267 GTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P+ YT    I    + G+ + A ++++ M +  + PD+V  + LID    AG++  A 
Sbjct: 500 --PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAK 557

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+  +   + I    ISY +++    ++    +AL L + M    ++P + T N LI   
Sbjct: 558 ELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGY 617

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C    +PK  E LS M S G+ P++ +Y+ L+    ++ ++E   +L+++ ++ G+  N+
Sbjct: 618 CRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNI 677

Query: 445 VMFKCII-GMCS 455
           + +  I+ G C+
Sbjct: 678 ITYNLILNGFCA 689



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 191/423 (45%), Gaps = 11/423 (2%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN ++    + G+     D+L +M + GL      Y+     +C+ +  I EA   F
Sbjct: 327 LLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICR-RDNILEAQEIF 385

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +      P L +F+ L+ V A +     A    R ++ +G+  D  +YT LI    ++
Sbjct: 386 DEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRN 445

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G +    ++  EM+  G   +V TY   ++G  K    A A   +  M  + + PD   F
Sbjct: 446 GALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTF 505

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
             LI    + G +D+A ++   M      + PD +T   L+     AG++ RA+E++  +
Sbjct: 506 TTLIRGYCKDGNMDKALNLFEAMVRT--NLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            + +I      Y   +N    +G    A ++ D M +KG+ P+ V  + LI     +G +
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDM 623

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A+E L +  + GI     SY++L+       N +KA  L   M+   L+  + T N +
Sbjct: 624 PKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLI 683

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +   C   ++ +  +VL  M  +G+ P+  TYS L+     +D+++       +  + G+
Sbjct: 684 LNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGL 743

Query: 441 IPN 443
           +P+
Sbjct: 744 VPD 746



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 138/574 (24%), Positives = 247/574 (43%), Gaps = 69/574 (12%)

Query: 8   MLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF 67
           ++ + +PN KH++ +  +S  +H    L+R  R+SE    +  M RK  +   KV     
Sbjct: 123 LVSYHFPNFKHSSLS--LSAMVHF---LVRGRRLSEAQACILRMVRKSGVSRVKVV---- 173

Query: 68  FNVCKSQKAIKEAFRF--FKLVPNPTLSTFNMLMSVCASSKDSEG--AFQVLRLVQEAGL 123
                 +  I   F F    L+ +  + T+        + K  EG  AFQ+LR     G+
Sbjct: 174 ------ESLISTCFYFGSVGLIYDLLVRTY------VQAKKLREGSEAFQILR---RKGV 218

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
                    L+    ++G VD  +E++ E+V  GIE NV+T   +++   K  +      
Sbjct: 219 SVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMF 278

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
               M  K V  D V +N LI A  + G V+ AF +L   ++    ++P  +T  A++  
Sbjct: 279 FLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSS--RGMEPGLLTYNAILYG 336

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
               G+ DRA++V   + +  +      Y T+ +  C +    E A  ++D+M+++GV+P
Sbjct: 337 LCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILE-AQEIFDEMSRRGVLP 395

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 361
           D V  S+LI      G +  A    +E +  GI    + Y+ L+ G C N      AL++
Sbjct: 396 DLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGA-LSDALKM 454

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            + M +      V T N  +  LC          + ++M   G+ P+  T++ L+    +
Sbjct: 455 RDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCK 514

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
             +++  L L        + P+ V +  +I G C     KA  +         GR +   
Sbjct: 515 DGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFC-----KAGEM---------GRAK--E 558

Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 540
            W  +     R+ I+   I    V++       LP   ++ ++++E  G+      R NL
Sbjct: 559 LWDDMI----RKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEK-GI------RPNL 607

Query: 541 C---SLIDGF---GEYDPRAFSLLEEAASFGIVP 568
               +LI G+   G+  P+A+  L +  S GI+P
Sbjct: 608 VTCNTLIKGYCRSGDM-PKAYEYLSKMISNGIIP 640



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 126/309 (40%), Gaps = 42/309 (13%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN---PTL 92
           R G +S+ + + ++M  +G   MD V +  F N +CK +        F ++V     P  
Sbjct: 444 RNGALSDALKMRDEMLARGCF-MDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDF 502

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            TF  L+       + + A  +   +    LK D   Y TLI    K+G++    E++ +
Sbjct: 503 YTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDD 562

Query: 153 MVNA-----------------------------------GIEPNVHTYGALIDGCAKAGQ 177
           M+                                     GI PN+ T   LI G  ++G 
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           + KA+     M S  + PD   +N LI    +   +++AF ++ EM  E   +  + IT 
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEM--EKRGLQFNIITY 680

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             ++      G++  A +V + + +  I      Y+  IN      + + A   +D+M +
Sbjct: 681 NLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQ 740

Query: 298 KGVIPDEVF 306
           +G++PD+ F
Sbjct: 741 RGLVPDDRF 749


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 200/432 (46%), Gaps = 16/432 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L +  +    +  L DME KG+   D V +    N    +  ++EAF+      +   
Sbjct: 265 NALCKDRKFENVMFFLSDMEGKGVF-ADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGM 323

Query: 90  -PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P L T+N +L  +C   K       ++ ++Q  GL  +   Y TL+    +   +    
Sbjct: 324 EPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQ-LGLTPNAATYNTLLVEICRRDNILEAQ 382

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E+F EM   G+ P++ ++ +LI   A+ G + +A   +  M    + PD V++  LI   
Sbjct: 383 EIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGF 442

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIK 266
            ++GA+  A  +  EM A    +D   +T    +   C      D      +M+ +  + 
Sbjct: 443 CRNGALSDALKMRDEMLARGCFMDV--VTYNTFLNGLCKKKMFADADMLFNEMVERGMV- 499

Query: 267 GTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
             P+ YT    I    + G+ + A ++++ M +  + PD+V  + LID    AG++  A 
Sbjct: 500 --PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAK 557

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E+  +   + I    ISY +++    ++    +AL L + M    ++P + T N LI   
Sbjct: 558 ELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGY 617

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C    +PK  E LS M S G+ P++ +Y+ L+    ++ ++E   +L+++ ++ G+  N+
Sbjct: 618 CRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNI 677

Query: 445 VMFKCII-GMCS 455
           + +  I+ G C+
Sbjct: 678 ITYNLILNGFCA 689



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 191/423 (45%), Gaps = 11/423 (2%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN ++    + G+     D+L +M + GL      Y+     +C+ +  I EA   F
Sbjct: 327 LLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICR-RDNILEAQEIF 385

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +      P L +F+ L+ V A +     A    R ++ +G+  D  +YT LI    ++
Sbjct: 386 DEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRN 445

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G +    ++  EM+  G   +V TY   ++G  K    A A   +  M  + + PD   F
Sbjct: 446 GALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTF 505

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
             LI    + G +D+A ++   M      + PD +T   L+     AG++ RA+E++  +
Sbjct: 506 TTLIRGYCKDGNMDKALNLFEAMVRT--NLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            + +I      Y   +N    +G    A ++ D M +KG+ P+ V  + LI     +G +
Sbjct: 564 IRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDM 623

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A+E L +  + GI     SY++L+       N +KA  L   M+   L+  + T N +
Sbjct: 624 PKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLI 683

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +   C   ++ +  +VL  M  +G+ P+  TYS L+     +D+++       +  + G+
Sbjct: 684 LNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGL 743

Query: 441 IPN 443
           +P+
Sbjct: 744 VPD 746



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 138/574 (24%), Positives = 247/574 (43%), Gaps = 69/574 (12%)

Query: 8   MLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF 67
           ++ + +PN KH++ +  +S  +H    L+R  R+SE    +  M RK  +   KV     
Sbjct: 123 LVSYHFPNFKHSSXS--LSAMVHF---LVRGRRLSEAQACILRMVRKSGVSRVKVV---- 173

Query: 68  FNVCKSQKAIKEAFRF--FKLVPNPTLSTFNMLMSVCASSKDSEG--AFQVLRLVQEAGL 123
                 +  I   F F    L+ +  + T+        + K  EG  AFQ+LR     G+
Sbjct: 174 ------ESLISTCFYFGSVGLIYDLLVRTY------VQAKKLREGSEAFQILR---RKGV 218

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
                    L+    ++G VD  +E++ E+V  GIE NV+T   +++   K  +      
Sbjct: 219 SVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMF 278

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
               M  K V  D V +N LI A  + G V+ AF +L   ++    ++P  +T  A++  
Sbjct: 279 FLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSS--RGMEPGLLTYNAILYG 336

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
               G+ DRA++V   + +  +      Y T+ +  C +    E A  ++D+M+++GV+P
Sbjct: 337 LCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILE-AQEIFDEMSRRGVLP 395

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 361
           D V  S+LI      G +  A    +E +  GI    + Y+ L+ G C N      AL++
Sbjct: 396 DLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGA-LSDALKM 454

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            + M +      V T N  +  LC          + ++M   G+ P+  T++ L+    +
Sbjct: 455 RDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCK 514

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
             +++  L L        + P+ V +  +I G C     KA  +         GR +   
Sbjct: 515 DGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFC-----KAGEM---------GRAK--E 558

Query: 481 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 540
            W  +     R+ I+   I    V++       LP   ++ ++++E  G+      R NL
Sbjct: 559 LWDDMI----RKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEK-GI------RPNL 607

Query: 541 C---SLIDGF---GEYDPRAFSLLEEAASFGIVP 568
               +LI G+   G+  P+A+  L +  S GI+P
Sbjct: 608 VTCNTLIKGYCRSGDM-PKAYEYLSKMISNGIIP 640



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 126/309 (40%), Gaps = 42/309 (13%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN---PTL 92
           R G +S+ + + ++M  +G   MD V +  F N +CK +        F ++V     P  
Sbjct: 444 RNGALSDALKMRDEMLARGCF-MDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDF 502

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            TF  L+       + + A  +   +    LK D   Y TLI    K+G++    E++ +
Sbjct: 503 YTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDD 562

Query: 153 MVNA-----------------------------------GIEPNVHTYGALIDGCAKAGQ 177
           M+                                     GI PN+ T   LI G  ++G 
Sbjct: 563 MIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD 622

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           + KA+     M S  + PD   +N LI    +   +++AF ++ EM  E   +  + IT 
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEM--EKRGLQFNIITY 680

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             ++      G++  A +V + + +  I      Y+  IN      + + A   +D+M +
Sbjct: 681 NLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQ 740

Query: 298 KGVIPDEVF 306
           +G++PD+ F
Sbjct: 741 RGLVPDDRF 749


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 188/433 (43%), Gaps = 13/433 (3%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + +YN LI    R G+     +++EDM R  +      ++    N C S    +EA R  
Sbjct: 65  VETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFN-NLINACGSCGNWREALRVC 123

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           K + +    P L T N+++S   S      A     L++   ++ D      +I    K 
Sbjct: 124 KKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCLIKV 183

Query: 141 GKVDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
            +     E+F  M     E  P+V T+ ++I   +  GQ+      +  M ++ +KP+ V
Sbjct: 184 KQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIV 243

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +NALI+A    G    AF V  EM        PD ++  +L+     + Q  RAREV+ 
Sbjct: 244 SYNALISAYASHGMDKEAFSVFDEMKRS--GFCPDVVSYTSLISTFGRSQQPARAREVFD 301

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
           M+ +   K     Y   ++     G    A  +  +M + G+ P+ V +  L+   G  G
Sbjct: 302 MMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFG 361

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +      +L  A+ +GI +  I+ +S +G+  N   ++KA+ LY  M++   KP   T  
Sbjct: 362 QKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFT 421

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI+  C   +  + +    +M  L +  ++  YS ++ A  ++  +     L +  K  
Sbjct: 422 ILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGS 481

Query: 439 GVIPNLVMFKCII 451
           G  P+LV +  +I
Sbjct: 482 GCCPDLVTYTAMI 494



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 184/439 (41%), Gaps = 47/439 (10%)

Query: 35  LIRQGRISECIDLLEDME-------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           L + G I  C+ + + M+       R  + +M    HAR   + +++      F   K  
Sbjct: 4   LTQIGSIEHCVQVFDWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLF---FEMQKWR 60

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + T+N L++    +     A  ++  +  A +      +  LI  C   G      
Sbjct: 61  CKPDVETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREAL 120

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            V  +M + G+ P++ T+  ++       Q +KA   + +M+  N++PD    N +I   
Sbjct: 121 RVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIHCL 180

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +     +A ++ + M  +     PD +T  ++                   IH Y+++G
Sbjct: 181 IKVKQYGQAIEIFSSMREKRSECRPDVVTFTSI-------------------IHLYSVRG 221

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
             E      +C           +V+  M  +G+ P+ V  +ALI      G  + AF + 
Sbjct: 222 QIE------DC----------KAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVF 265

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E K  G    ++SY+SL+     ++   +A E+++ MK  K KP + + NAL+ A    
Sbjct: 266 DEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSN 325

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             LP+ +++L +M+  G+ PN ++   LL AC R         +LS A+  G+  N +  
Sbjct: 326 GYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIAC 385

Query: 448 KCIIG--MCSRRYEKARTL 464
              IG  M    YEKA  L
Sbjct: 386 NSAIGSYMNIGEYEKAINL 404



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 184/442 (41%), Gaps = 19/442 (4%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + SYN LI      G   E   + ++M+R G       Y +      +SQ+  
Sbjct: 235 AEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPA 294

Query: 78  K--EAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +  E F   K     P L ++N LM    S+     A  +LR +++ G+  +     TL+
Sbjct: 295 RAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLL 354

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
             C + G+   +  V       GI  N     + I      G+  KA   Y  M +K  K
Sbjct: 355 AACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTK 414

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V F  LI+ C +    + A     EM     P+  +     +++ A +  GQ+ +A 
Sbjct: 415 PDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSE--IYSSMICAYSKQGQLVKAE 472

Query: 255 EVYKMIHKYNIKGT---PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
            ++      ++KG+   P++  YT  IN  S +  WE  C++Y +M    +  D +  SA
Sbjct: 473 SLFN-----SLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSA 527

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           L+       +      + +  K +GI     ++  ++ ACS  ++W+KA +L   M+   
Sbjct: 528 LMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWRKATDLINLMEPSF 587

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
              ++ T+N L+  L    +    +++     +LG   N  TYSILL            +
Sbjct: 588 HLVSLGTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTYSILLKNLLSAGKWRKYI 647

Query: 430 MLLSQAKEDGVIPNLVMFKCII 451
            +L    + G+ P+  M+  I+
Sbjct: 648 EVLQWMNDAGIQPSHAMYNNIL 669



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/390 (18%), Positives = 147/390 (37%), Gaps = 78/390 (20%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGL--------------------LDMDKVY 63
            L SYN L+      G + + +D+L +ME+ G+                    +++D V 
Sbjct: 311 NLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVL 370

Query: 64  HA------------------RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105
            A                   + N+ + +KAI            P   TF +L+S C   
Sbjct: 371 SAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRM 430

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
              E A    + + +  +    ++Y+++I   +K G++     +F+ +  +G  P++ TY
Sbjct: 431 SKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTY 490

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
            A+I+  + +    K    Y  M + N++ D +  +AL+ A  +         +LAE+  
Sbjct: 491 TAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVL-ILAEIMK 549

Query: 226 E-----------------------------VHPVDPDH--ITIGALMKACANAGQVDRAR 254
           E                             ++ ++P    +++G +       G+  +  
Sbjct: 550 EKGIPFNDANFFEMLSACSILRDWRKATDLINLMEPSFHLVSLGTINHLLQFLGKSGKTE 609

Query: 255 EVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            + K+ +++   G+      Y+I +      G W     V   M   G+ P     + ++
Sbjct: 610 IMIKLFYRFVALGSSVNINTYSILLKNLLSAGKWRKYIEVLQWMNDAGIQPSHAMYNNIL 669

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
            FA H G  E A  +++E     + + +IS
Sbjct: 670 FFAQHCGDAEYA-AVIKERVGMRLCISLIS 698


>gi|307110337|gb|EFN58573.1| hypothetical protein CHLNCDRAFT_140730 [Chlorella variabilis]
          Length = 926

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 193/437 (44%), Gaps = 59/437 (13%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--------P 88
           R G  +  +   ++ME  G+   + V  A F     +     +  R F  +        P
Sbjct: 225 RHGDAAWLLRTWDEMEAAGVAPNNYVVSALFSAASHAPCTPAQLDRLFAALALLRSFGPP 284

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
           N T+  +  L+++       E A  V   V++ G++    LY++L   CA          
Sbjct: 285 NDTV--YTSLLTLIQRQAIQERAVDVWTAVKQDGVRQTPHLYSSLFAACAPGASPALVEV 342

Query: 143 ----VDAMFEVFHEMVNAGIEPNVH-------TYGALIDGCAKAGQVAKAFGAYGIMRSK 191
                DAM + + E V A  +P  H        Y AL+      GQ+ ++ G Y  MR +
Sbjct: 343 ALEAADAMQDSWQECV-ARSQPRPHYERDMLVAYNALLHLLGSIGQLQRSLGVYRGMRRR 401

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQV 250
              PD V +N LI A    G V  A    ++M +A++ P +    T GAL+   A A   
Sbjct: 402 GPAPDVVTYNTLIAAAAHGGNVQAAMRTFSDMVDADIEPTE---RTAGALLHCYAKARDA 458

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG--DW-EFACSVYDDMTKKGVIPDEVFL 307
             AR V++ + +  ++   E+YT  I+ C Q G   W +FA  + ++M ++G+ P  V  
Sbjct: 459 ASARRVFEGMAQLGVRPNLEIYTSLIDACVQAGGKQWTQFAFQLVEEMRREGLAPSAVTY 518

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-- 365
             L+     AG V  AF + ++A ++G++     +  L+  C+ A+  ++A++L + +  
Sbjct: 519 GCLLAACEKAGDVTRAFALYKQACDEGVAPSDQMHDMLISMCTEAERLEEAVDLVKRLAR 578

Query: 366 ---------------KSIKLKPTVS------TMNALITALCDGDQLPKTMEVLSDMKSLG 404
                          +S+    T S      T+N+LI ALC G  + + + +LS  +++G
Sbjct: 579 SSPGAQPVGGGGGGGRSVDGGATTSGGLHEHTLNSLIRALC-GKYVDRALRLLSLCQTMG 637

Query: 405 LCPNTITYSILLVACER 421
           + P+  TY  L+  C +
Sbjct: 638 MRPSRRTYLSLITGCAK 654



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/504 (21%), Positives = 209/504 (41%), Gaps = 29/504 (5%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+   N  +S CA+  + E A +V+ +++  G++ D   Y +LI   A +G +      +
Sbjct: 140 TVEVANAAISACANQGNWEAAQEVVSIMEREGIQRDVITYNSLIKAAAAAGLLPHAVRTY 199

Query: 151 HEMVNAGIEPNVHTYGALIDGCA--KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            E+  AG+ P   TY AL    A  + G  A     +  M +  V P+  V +AL +A  
Sbjct: 200 RELAAAGLRPTTFTYAALFTAAAKARHGDAAWLLRTWDEMEAAGVAPNNYVVSALFSAAS 259

Query: 209 QS----GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            +      +DR F  LA + +   P D  + ++  L++  A     +RA +V+  + +  
Sbjct: 260 HAPCTPAQLDRLFAALALLRSFGPPNDTVYTSLLTLIQRQAIQ---ERAVDVWTAVKQDG 316

Query: 265 IKGTPEVYTIAINCCSQTGDWEF------ACSVYDDMTKKGVIPDE----------VFLS 308
           ++ TP +Y+     C+             A     D  ++ V   +          V  +
Sbjct: 317 VRQTPHLYSSLFAACAPGASPALVEVALEAADAMQDSWQECVARSQPRPHYERDMLVAYN 376

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           AL+   G  G+++ +  + +  + +G +  +++Y++L+ A ++  N Q A+  +  M   
Sbjct: 377 ALLHLLGSIGQLQRSLGVYRGMRRRGPAPDVVTYNTLIAAAAHGGNVQAAMRTFSDMVDA 436

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDV 425
            ++PT  T  AL+              V   M  LG+ PN   Y+ L+ AC +   K   
Sbjct: 437 DIEPTERTAGALLHCYAKARDAASARRVFEGMAQLGVRPNLEIYTSLIDACVQAGGKQWT 496

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
           +    L+ + + +G+ P+ V + C++  C +  +  R    +  + + G    +     L
Sbjct: 497 QFAFQLVEEMRREGLAPSAVTYGCLLAACEKAGDVTRAFALYKQACDEGVAPSDQMHDML 556

Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
             M      +   +  V+ +++     Q         R V+    ++  L    L SLI 
Sbjct: 557 ISMCTEAERLEEAVDLVKRLARSSPGAQPVGGGGGGGRSVDGGATTSGGLHEHTLNSLIR 616

Query: 546 GF-GEYDPRAFSLLEEAASFGIVP 568
              G+Y  RA  LL    + G+ P
Sbjct: 617 ALCGKYVDRALRLLSLCQTMGMRP 640



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 150/336 (44%), Gaps = 31/336 (9%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L  +N L+ +  S    + +  V R ++  G   D   Y TLI   A  G V A    F 
Sbjct: 372 LVAYNALLHLLGSIGQLQRSLGVYRGMRRRGPAPDVVTYNTLIAAAAHGGNVQAAMRTFS 431

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +MV+A IEP   T GAL+   AKA   A A   +  M    V+P+  ++ +LI AC Q+G
Sbjct: 432 DMVDADIEPTERTAGALLHCYAKARDAASARRVFEGMAQLGVRPNLEIYTSLIDACVQAG 491

Query: 212 A---VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
                  AF ++ EM  E   + P  +T G L+ AC  AG V RA  +YK      +  +
Sbjct: 492 GKQWTQFAFQLVEEMRRE--GLAPSAVTYGCLLAACEKAGDVTRAFALYKQACDEGVAPS 549

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIP---------------------DEV 305
            +++ + I+ C++    E A  +   + +   G  P                      E 
Sbjct: 550 DQMHDMLISMCTEAERLEEAVDLVKRLARSSPGAQPVGGGGGGGRSVDGGATTSGGLHEH 609

Query: 306 FLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
            L++LI      GK V+ A  +L   +  G+     +Y SL+  C+ A     + +LY  
Sbjct: 610 TLNSLIR--ALCGKYVDRALRLLSLCQTMGMRPSRRTYLSLITGCAKASRSAASYDLYRS 667

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +++  ++   ++ +ALIT+LC  +QL     V +DM
Sbjct: 668 LRAQGMEADAASGSALITSLCHANQLEVAETVYNDM 703



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/457 (20%), Positives = 169/457 (36%), Gaps = 101/457 (22%)

Query: 1   MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGL 56
           MQD  +  +    P     +Y  D+   L +YN L+      G++   + +   M R+G 
Sbjct: 350 MQDSWQECVARSQPR---PHYERDM---LVAYNALLHLLGSIGQLQRSLGVYRGMRRRGP 403

Query: 57  LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAF 112
              D V +            ++ A R F  + +    PT  T   L+   A ++D+  A 
Sbjct: 404 AP-DVVTYNTLIAAAAHGGNVQAAMRTFSDMVDADIEPTERTAGALLHCYAKARDAASAR 462

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAMFEVFHEMVNAGIEPNVHTYGALI 169
           +V   + + G++ + ++YT+LI  C ++G        F++  EM   G+ P+  TYG L+
Sbjct: 463 RVFEGMAQLGVRPNLEIYTSLIDACVQAGGKQWTQFAFQLVEEMRREGLAPSAVTYGCLL 522

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV---LAEMNAE 226
             C KAG V +AF  Y     + V P   + + LI+ C ++  ++ A D+   LA  +  
Sbjct: 523 AACEKAGDVTRAFALYKQACDEGVAPSDQMHDMLISMCTEAERLEEAVDLVKRLARSSPG 582

Query: 227 VHPV----------------------------------------------------DPDH 234
             PV                                                     P  
Sbjct: 583 AQPVGGGGGGGRSVDGGATTSGGLHEHTLNSLIRALCGKYVDRALRLLSLCQTMGMRPSR 642

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
            T  +L+  CA A +   + ++Y+ +    ++      +  I         E A +VY+D
Sbjct: 643 RTYLSLITGCAKASRSAASYDLYRSLRAQGMEADAASGSALITSLCHANQLEVAETVYND 702

Query: 295 M----------------------TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           M                      +  G  PD   L+AL+     AG + +A +  ++ + 
Sbjct: 703 MLACAWRRELHTLPAPAARRGGLSNHGRTPDGEALAALVQAFAAAGDLRSAAKYYKQLRR 762

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
            G   G+ +      A S+ + W+  +E Y     +K
Sbjct: 763 VG-KAGLAAV-----AVSHRRMWEVLIENYCRQHRVK 793


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 155/334 (46%), Gaps = 4/334 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP   T+N ++   +          +L  ++  GL  +   Y  L+    K G +   F+
Sbjct: 237 NPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQ 296

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M    I P++ TY  LI+G   AG + +      +M+S  ++PD V +N LI  C 
Sbjct: 297 IVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCF 356

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK-ACANAGQVDRAREVYKMIHKYNIKG 267
           + G    A  ++ +M  E   V P+ +T    +K  C    + +  R+V +++  +    
Sbjct: 357 ELGLSLEAKKLMEQM--ENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSP 414

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   I    + GD   A  +  +M +KG+  + + L+ ++D      KV+ A  +L
Sbjct: 415 DIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLL 474

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
             A  +G  V  ++Y +L+      +  +KA E+++ MK IK+ PTV+T N+LI  LC  
Sbjct: 475 DSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHH 534

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITY-SILLVACE 420
            +    ME   ++   GL P+  T+ SI+L  C+
Sbjct: 535 GKTELAMEKFDELAESGLLPDDCTFNSIILGYCK 568



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 194/433 (44%), Gaps = 50/433 (11%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +++    +GR+S+  DLL DM+R GL+     Y+   +  CK   ++KEAF+  +L
Sbjct: 242 TYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCK-LGSLKEAFQIVEL 300

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      P L T+N+L++ VC +    EG  +++ +++   L+ D   Y TLI  C + G
Sbjct: 301 MKQTNILPDLCTYNILINGVCNAGSIREG-LELMDVMKSLKLQPDVVTYNTLIDGCFELG 359

Query: 142 KVDAMFEVFHEMVNAGIEPN------------------------------------VHTY 165
                 ++  +M N G++PN                                    + TY
Sbjct: 360 LSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTY 419

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
             LI    K G ++ A      M  K +K + +  N ++ A  +   VD A ++L   + 
Sbjct: 420 HTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHK 479

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
             + V  D +T G L+       +V++A E++  + +  I  T   +   I      G  
Sbjct: 480 RGYIV--DEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKT 537

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           E A   +D++ + G++PD+   +++I      G+VE AFE   E+          + + L
Sbjct: 538 ELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNIL 597

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +         +KAL  +  + + +   TV T N +I+A C   +L +  ++LS+M+   L
Sbjct: 598 LNGLCKEGMTEKALNFFNTLITEREVDTV-TYNTMISAFCKDKKLKEAYDLLSEMEEKRL 656

Query: 406 CPNTITYSILLVA 418
            P+  TY+ ++ +
Sbjct: 657 EPDRFTYNSIITS 669



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 171/380 (45%), Gaps = 8/380 (2%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGK 142
           L P P+ + F++ +S    +     A QV + +    LK +     TL+    +   S  
Sbjct: 125 LSPPPSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFS 184

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFN 201
           + +  EVF +MV  G+  +V T+  L++G    G++  A G    M S+ NV PD V +N
Sbjct: 185 IASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYN 244

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            ++ A  + G +    D+L +M    + + P+ +T   L+      G +  A ++ +++ 
Sbjct: 245 TILKAMSKKGRLSDVKDLLLDMKR--NGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMK 302

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           + NI      Y I IN     G       + D M    + PD V  + LID     G   
Sbjct: 303 QTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSL 362

Query: 322 AAFEILQEAKNQGISVGIISYS-SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            A +++++ +N G+    ++++ SL   C   K  +   ++ E ++     P + T + L
Sbjct: 363 EAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTL 422

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I A      L   +E++ +M   G+  NTIT + +L A  ++  V+    LL  A + G 
Sbjct: 423 IKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGY 482

Query: 441 IPNLVMFKCIIGMCSRRYEK 460
           I + V +  +I M   R EK
Sbjct: 483 IVDEVTYGTLI-MGYFREEK 501



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L ++ ++ E  +LL+   ++G + +D+V +         ++ +++AF  +    ++   P
Sbjct: 461 LCKERKVDEAHNLLDSAHKRGYI-VDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITP 519

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T++TFN L+        +E A +    + E+GL  D   + ++I    K G+V+  FE +
Sbjct: 520 TVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFY 579

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           +E +    +P+ +T   L++G  K G   KA   +  + ++  + D V +N +I+A  + 
Sbjct: 580 NESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITER-EVDTVTYNTMISAFCKD 638

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
             +  A+D+L+EM  E   ++PD  T  +++ +    G++  A E+ K
Sbjct: 639 KKLKEAYDLLSEM--EEKRLEPDRFTYNSIITSLMEDGKLSEADELLK 684



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 138/343 (40%), Gaps = 48/343 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E   L+E ME  G+      ++     +CK +K  +   +  +L
Sbjct: 347 TYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKEL 406

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-----------CK--- 128
           V     +P + T++ L+       D  GA +++R + + G+K +           CK   
Sbjct: 407 VEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERK 466

Query: 129 ---------------------LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
                                 Y TLI    +  KV+  FE++ EM    I P V T+ +
Sbjct: 467 VDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNS 526

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           LI G    G+   A   +  +    + PD   FN++I    + G V++AF+   E  +  
Sbjct: 527 LIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNE--SIK 584

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWE 286
           H   PD+ T   L+      G  ++A   +  +I +  +      Y   I+   +    +
Sbjct: 585 HSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITEREVDTV--TYNTMISAFCKDKKLK 642

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            A  +  +M +K + PD    +++I      GK+  A E+L++
Sbjct: 643 EAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKK 685


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 182/429 (42%), Gaps = 39/429 (9%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV+    + + L +  RI E   L++ M  +G       Y      +C+  K + EA   
Sbjct: 286 DVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGK-VDEARML 344

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGK 142
              VPNP +  FN L++   S    + A  V+   +   G   D   Y TLI    K G 
Sbjct: 345 LNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGY 404

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           + +  E+ +EM   G EPNV TY  LID   K G++ +A      M  K +  + V +N 
Sbjct: 405 LVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNC 464

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI+A  +   V  A ++  +M+++     PD  T  +L+       +             
Sbjct: 465 LISALCKDEKVQDALNMFGDMSSK--GCKPDIFTFNSLIFGLCKVNK------------- 509

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                                 +E A  +Y DM  +GVI + +  + LI      G ++ 
Sbjct: 510 ----------------------FEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQE 547

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A +++ +   +G  +  I+Y+ L+ A   A N +K L L+E M S  L P   + N LI 
Sbjct: 548 ALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN 607

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC    +   +E L DM   GL P+ +TY+ L+    +    +  L L  + + +G+ P
Sbjct: 608 GLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICP 667

Query: 443 NLVMFKCII 451
           + + +  +I
Sbjct: 668 DAITYNTLI 676



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 133/548 (24%), Positives = 235/548 (42%), Gaps = 49/548 (8%)

Query: 56  LLDMDKVYHA----RFFNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMS 100
           LLDM  VY      R +NV      +  A    K+VPN           PT+ TF ++M 
Sbjct: 169 LLDMRGVYSCEPTFRSYNVVLD---VLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMK 225

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
                 + + A  +L+ +   G   +  +Y TLI    K G+V+ + ++  EM+  G  P
Sbjct: 226 ALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIP 285

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           +V+T+   I G  K  ++ +A      M  +   P+   +  L+    + G VD A  +L
Sbjct: 286 DVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLL 345

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK--YNIKGTPEVY---TIA 275
            ++       +P+ +    L+    + G++D A+ V   +H+   ++   P+++   T+ 
Sbjct: 346 NKVP------NPNVVLFNTLINGYVSRGRLDEAKAV---MHESMLSVGCGPDIFTYNTLI 396

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           +  C + G    A  + ++M  KG  P+ +  + LID     G++E A  +L E   +G+
Sbjct: 397 LGLCKK-GYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGL 455

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           ++  + Y+ L+ A    +  Q AL ++  M S   KP + T N+LI  LC  ++  + + 
Sbjct: 456 ALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALG 515

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           +  DM   G+  NTITY+ L+ A  R+  ++  L L++     G   + + +  +I    
Sbjct: 516 LYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALC 575

Query: 456 R--RYEKARTLNEHVLS--FNSGRPQIENKWTSL--------ALMVYREAIVAGTIPTVE 503
           R    EK   L E ++S   N            L        AL   R+ I  G  P + 
Sbjct: 576 RAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIV 635

Query: 504 VVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEE 560
             + ++  L     A     L + L   G+  DA+  + L S     G +D  A  LL  
Sbjct: 636 TYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFD-DAHLLLSR 694

Query: 561 AASFGIVP 568
               G +P
Sbjct: 695 GVDSGFIP 702



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 135/290 (46%), Gaps = 21/290 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           +R  ++GR+ E  ++L++M  KGL      Y+     +CK +K +++A   F  + +   
Sbjct: 432 DRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEK-VQDALNMFGDMSSKGC 490

Query: 90  -PTLSTFN-MLMSVCASSKDSE--GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
            P + TFN ++  +C  +K  E  G +Q + L    G+ A+   Y TLI    + G +  
Sbjct: 491 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLL---EGVIANTITYNTLIHAFLRRGAMQE 547

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++ ++M+  G   +  TY  LI    +AG + K    +  M SK + P+ +  N LI 
Sbjct: 548 ALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN 607

Query: 206 ACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
              ++G +  A + L +M   +H  + PD +T  +L+      G   RA+E   +  K  
Sbjct: 608 GLCRTGNIQHALEFLRDM---IHRGLTPDIVTYNSLINGLCKTG---RAQEALNLFDKLQ 661

Query: 265 IKGT-PE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           ++G  P+   Y   I+   + G ++ A  +       G IP+EV    L+
Sbjct: 662 VEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILV 711



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           +VY + I+     G+++   ++   M ++G++  E     ++   G AG    A  +L +
Sbjct: 112 DVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLD 171

Query: 330 AKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            +          SY+ ++         +    ++  M S  + PTV T   ++ ALC  +
Sbjct: 172 MRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVN 231

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++     +L DM   G  PN I Y  L+ A  +   V   L LL +    G IP++  F 
Sbjct: 232 EVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFN 291

Query: 449 -CIIGMCS--RRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 488
             I G+C   R +E A+ ++  +L     R    N +T   LM
Sbjct: 292 DAIHGLCKMLRIHEAAKLVDRMLL-----RGFTPNSFTYGVLM 329


>gi|358346363|ref|XP_003637238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503173|gb|AES84376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 117/482 (24%), Positives = 206/482 (42%), Gaps = 39/482 (8%)

Query: 67  FFNVCKSQKAIKEAFRF---FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
            +  C+  K  + A  F   +++  +P   ++  +++    S     AF +   +   G+
Sbjct: 17  LYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGI 76

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
             D    TT++    K GK     EVF  ++   + PN  TY AL+DG  K G++  A  
Sbjct: 77  SFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAEL 136

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
               M  ++V P+ + F+++I    + G + +A DVL EM      V P+ I    L+  
Sbjct: 137 VLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQ--RNVMPNTIVYAILIDG 194

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
              AG+ D A +  K +    ++ +  ++ I +N   + G  + A S+  DM  KG+ PD
Sbjct: 195 YFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPD 254

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL------------------ 345
            V  ++LID     G   AA  I+QE K + I   +++Y++L                  
Sbjct: 255 IVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSR 314

Query: 346 ---MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
              +G   + K  + AL++   MKS  + P   T N LI  LC    + K    L +M  
Sbjct: 315 MIELGLAPDCKT-EDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLV 373

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR----RY 458
           +   P  IT+  L+ A  R +  +  L +  +    G+  +L ++  +I +  R    R 
Sbjct: 374 MEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLITVFCRLGMTRK 433

Query: 459 EKA-------RTLNEHVLSFNSG-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 510
            K        R ++  ++++N+  R          AL  Y +  V G  P +   + +LG
Sbjct: 434 AKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLG 493

Query: 511 CL 512
            L
Sbjct: 494 GL 495



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 165/381 (43%), Gaps = 32/381 (8%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           ++  L+    + G++D    +  +M + GI+P++  Y +LIDG  K G    A      M
Sbjct: 222 IFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEM 281

Query: 189 RSKNVKPDRVVFNALITACGQSGAVD--------------------RAFDVLAEMNAEVH 228
           + KN++ D V +NALI    + G  D                     A D+L EM +  +
Sbjct: 282 KEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIELGLAPDCKTEDALDILNEMKS--Y 339

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
            + P+ +T   L+      G V++A      +       TP  +   +   S++   +  
Sbjct: 340 GIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKI 399

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             +++ +   G+       + LI      G    A  +L E   +GIS  +++Y++L+  
Sbjct: 400 LQIHEKLVASGLELSLTVYNTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRG 459

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD----QLPKTMEVLSDMKSLG 404
                + +KAL+ Y  M    + P ++T N L+  L +       + +T +++S+M   G
Sbjct: 460 YCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERG 519

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKAR 462
           L PN  TY IL+    R  + +  ++L  +    G +P L  +  +I   ++  +  +AR
Sbjct: 520 LVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEAR 579

Query: 463 TLNEHVLSFNSGRPQIENKWT 483
            L   +L+    + +I N +T
Sbjct: 580 ELLNDLLT----KGRIPNSFT 596



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 170/422 (40%), Gaps = 88/422 (20%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L R GR+ E   L+ DM  KG+ D D V +A   +             +FK       
Sbjct: 228 NNLKRVGRMDEARSLIIDMYSKGI-DPDIVNYASLID------------GYFK------- 267

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
                         +   A  +++ ++E  ++ D   Y  LI    + GK D  + V   
Sbjct: 268 ------------EGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCSR 314

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+  G+ P+  T  AL         +     +YGIM      P+ V +N LI    ++GA
Sbjct: 315 MIELGLAPDCKTEDAL--------DILNEMKSYGIM------PNAVTYNILIGGLCKTGA 360

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V++A   L EM   V    P  IT   L+KA + + + D+  ++++ +    ++ +  VY
Sbjct: 361 VEKAESALDEM--LVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVY 418

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I    + G    A  V D+M K+G+  D V  +ALI        VE A +   +   
Sbjct: 419 NTLITVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFV 478

Query: 333 QGISVGIISYSSLMGACSNAK--------------------------------------- 353
            GI+  I +Y++L+G  SNA                                        
Sbjct: 479 DGIAPNITTYNTLLGGLSNAGLMEEMMEETEKLVSEMNERGLVPNAATYDILVSGYGRVG 538

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           N +K + L+  M +    PT+ T N LI+      ++ +  E+L+D+ + G  PN+ TY 
Sbjct: 539 NRKKTIILHIEMITKGFVPTLKTYNVLISDYAKSGKMIEARELLNDLLTKGRIPNSFTYD 598

Query: 414 IL 415
           IL
Sbjct: 599 IL 600



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 100/456 (21%), Positives = 192/456 (42%), Gaps = 58/456 (12%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G+  D    ++++    + GK+     +F EM   G++PN  +Y  +I+   K+G+V +A
Sbjct: 5   GIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEA 64

Query: 182 F-----------------------GAYGIMRSK------------NVKPDRVVFNALITA 206
           F                       G + + ++K            N+ P+ V ++AL+  
Sbjct: 65  FNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDG 124

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G ++ A  VL +M  E  P  P+ IT  +++   A  G + +A +V + + + N+ 
Sbjct: 125 YCKLGKMELAELVLQKMEKEHVP--PNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVM 182

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
               VY I I+   + G+ + A     +M  + +    V    L++     G+++ A  +
Sbjct: 183 PNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSL 242

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           + +  ++GI   I++Y+SL+       N   AL + + MK   ++  V   NALI  L  
Sbjct: 243 IIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLR 302

Query: 387 -GDQLPK-------------------TMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
            G   P+                    +++L++MKS G+ PN +TY+IL+    +   VE
Sbjct: 303 LGKYDPRYVCSRMIELGLAPDCKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVE 362

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLA 486
                L +      +P  +  K ++   SR  +  + L  H     SG       + +L 
Sbjct: 363 KAESALDEMLVMEFVPTPITHKFLVKAYSRSEKADKILQIHEKLVASGLELSLTVYNTLI 422

Query: 487 LMVYREAIV-AGTIPTVEVVSKVLGCLQLPYNADIR 521
            +  R  +     +   E+V + +    + YNA IR
Sbjct: 423 TVFCRLGMTRKAKVVLDEMVKRGISADLVTYNALIR 458



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 141/299 (47%), Gaps = 2/299 (0%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+  GI P+V T  +++ G  + G++ +A   +  M    + P+ V +  +I +  +SG 
Sbjct: 1   MIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGR 60

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V  AF++ ++M   V  +  D +T   +M      G+   A EV++ I K N+      Y
Sbjct: 61  VMEAFNLQSQM--VVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTY 118

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +  ++   + G  E A  V   M K+ V P+ +  S++I+     G +  A ++L+E   
Sbjct: 119 SALLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQ 178

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           + +    I Y+ L+     A     A +  + MKS +L+ +    + L+  L    ++ +
Sbjct: 179 RNVMPNTIVYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDE 238

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              ++ DM S G+ P+ + Y+ L+    ++ +    L ++ + KE  +  ++V +  +I
Sbjct: 239 ARSLIIDMYSKGIDPDIVNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALI 297



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 151/359 (42%), Gaps = 45/359 (12%)

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           PD +T  +++      G++  A  +++ +++  +      Y   IN   ++G    A ++
Sbjct: 8   PDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNL 67

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS 350
              M  +G+  D V  + ++D     GK + A E+ +      ++   ++YS+L+ G C 
Sbjct: 68  QSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCK 127

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
             K     L L + M+   + P V T +++I        L K ++VL +M    + PNTI
Sbjct: 128 LGKMELAELVL-QKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTI 186

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468
            Y+IL+    +  + +V      + K   +  + V+F  ++    R  R ++AR+L   +
Sbjct: 187 VYAILIDGYFKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDM 246

Query: 469 LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 528
            S     P I N + SL    ++E      +  V+               +++E+ +   
Sbjct: 247 YS-KGIDPDIVN-YASLIDGYFKEGNQLAALSIVQ---------------EMKEKNIRFD 289

Query: 529 GVSADALKRSNLCSLIDGFGEYDPR-------------------AFSLLEEAASFGIVP 568
            V+ +AL +  L       G+YDPR                   A  +L E  S+GI+P
Sbjct: 290 VVAYNALIKGLL-----RLGKYDPRYVCSRMIELGLAPDCKTEDALDILNEMKSYGIMP 343



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 6/176 (3%)

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G++PD V  S+++      GK+  A  + +E    G+    +SY++++ +   +  
Sbjct: 1   MIMNGIMPDVVTCSSILYGFCRHGKLTEAAVLFREMYEMGLDPNHVSYATIINSLFKSGR 60

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
             +A  L   M    +   + T   ++  L    +  +  EV   +  L L PN +TYS 
Sbjct: 61  VMEAFNLQSQMVVRGISFDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSA 120

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII------GMCSRRYEKARTL 464
           LL    +   +E+  ++L + +++ V PN++ F  II      GM S+  +  R +
Sbjct: 121 LLDGYCKLGKMELAELVLQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREM 176


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 186/431 (43%), Gaps = 15/431 (3%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + +YN L+R      ++ E    L  M  +G +  D  Y+      CK +  ++EA
Sbjct: 180 IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCK-RDMLQEA 238

Query: 81  FRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
               K       VP+    T+  L++   +  D E A ++    Q   LK D  +Y +L+
Sbjct: 239 TELLKDAIFKGFVPDRV--TYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLV 296

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               + G +    +V +EMV  G  P++ TY  +I+G  K G ++ A         K   
Sbjct: 297 KGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYL 356

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD   FN +I    +   +D A  ++  M   ++ + PD IT  +++     AG+     
Sbjct: 357 PDVFTFNTMIDGYCKRLKLDSALQLVERM--WMYGIAPDAITYNSVLNGLCKAGKAKEVN 414

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           E ++ +     +     Y I I    +    E A  V   M++ G++PD +  + LI   
Sbjct: 415 ETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGF 474

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G ++ A+ + Q+   +G S    +++ L+GA S+  N Q A +++  M S   KP +
Sbjct: 475 CRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDL 534

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T   L+   C    + +    L++M S G  P+  T+  +L +      V   + ++  
Sbjct: 535 YTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHI 594

Query: 435 AKEDGVIPNLV 445
               GV+P +V
Sbjct: 595 MVRMGVVPEVV 605



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 172/412 (41%), Gaps = 24/412 (5%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           +A +  D   Y TL+    K  KV    +    M+N G  P+  TY  +IDG  K   + 
Sbjct: 177 DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQ 236

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           +A         K   PDRV + +LI      G V+RA ++  E  A+   + PD +   +
Sbjct: 237 EATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNE--AQAKDLKPDLVVYNS 294

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+K     G +  A +V   + +         Y I IN   + G+   A  V +D   KG
Sbjct: 295 LVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKG 354

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
            +PD    + +ID      K+++A ++++     GI+   I+Y+S++     A   ++  
Sbjct: 355 YLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVN 414

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           E +E M     +P   T N LI   C  +QL +   V+  M   GL P+TI+++ L+   
Sbjct: 415 ETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGF 474

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-----------------MCSRRYEKAR 462
            R  D++   +L  +  E G       F  +IG                 M S+ Y+   
Sbjct: 475 CRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDL 534

Query: 463 TLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 514
                ++  +     ++  +  LA MV +     G +P++    +VL  L +
Sbjct: 535 YTYRVLVDGSCKAANVDRAYVHLAEMVSK-----GFVPSMATFGRVLNSLAM 581



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 163/367 (44%), Gaps = 6/367 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P ++TFN ++       D   +  +L  V + G+  +       I    + G+++    +
Sbjct: 113 PDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVAL 172

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M +A I P+V TY  L+ G  K  +V +A      M ++   PD   +N +I    +
Sbjct: 173 VESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCK 231

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +  A ++L +  A      PD +T  +L+      G V+RA E++      ++K   
Sbjct: 232 RDMLQEATELLKD--AIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDL 289

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   +    + G    A  V ++M + G  PD    + +I+     G +  A  ++ +
Sbjct: 290 VVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMND 349

Query: 330 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           A  +G    + ++++++ G C   K    AL+L E M    + P   T N+++  LC   
Sbjct: 350 AIVKGYLPDVFTFNTMIDGYCKRLK-LDSALQLVERMWMYGIAPDAITYNSVLNGLCKAG 408

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  +  E   +M   G  PN ITY+IL+    + + +E    ++ +  +DG++P+ + F 
Sbjct: 409 KAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFN 468

Query: 449 CII-GMC 454
            +I G C
Sbjct: 469 TLIHGFC 475



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 11/370 (2%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+N LM  +C  SK  E A Q LR +   G   D   Y T+I    K   +    E
Sbjct: 182 PDVVTYNTLMRGLCKDSKVQEAA-QYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATE 240

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  + +  G  P+  TY +LI+G    G V +A   +   ++K++KPD VV+N+L+    
Sbjct: 241 LLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLC 300

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
           + G +  A  V+ EM  +     PD  T   ++      G +  A  V   ++   +KG 
Sbjct: 301 RQGLILHALQVMNEMVED--GCHPDIWTYNIVINGLCKMGNISDAAVV---MNDAIVKGY 355

Query: 268 TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P+V+T    I+   +    + A  + + M   G+ PD +  +++++    AGK +   E
Sbjct: 356 LPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNE 415

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
             +E   +G     I+Y+ L+         ++A  +   M    L P   + N LI   C
Sbjct: 416 TFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFC 475

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L     +   +   G      T++IL+ A   K ++++   +  +    G  P+L 
Sbjct: 476 RNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLY 535

Query: 446 MFKCII-GMC 454
            ++ ++ G C
Sbjct: 536 TYRVLVDGSC 545



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 165/394 (41%), Gaps = 16/394 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N +M    ++   + A +V   +  AG+  D + +T  I +   +G+      +
Sbjct: 8   PAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRL 67

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              +   G +     Y  ++ G    G    A   +  M  ++V PD   FN ++ A  Q
Sbjct: 68  LRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQ 127

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +  +  +LA++      V  +  T    ++     G+++ A  + + +  Y      
Sbjct: 128 KGDIMESGALLAKVLKRGMSV--NKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVV 185

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
              T+    C  +   E A      M  +G IPD+   + +ID       ++ A E+L++
Sbjct: 186 TYNTLMRGLCKDSKVQE-AAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKD 244

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
           A  +G     ++Y SL+       + ++ALEL+   ++  LKP +   N+L+  LC    
Sbjct: 245 AIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGL 304

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +   ++V+++M   G  P+  TY+I++    +  ++    ++++ A   G +P++  F  
Sbjct: 305 ILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNT 364

Query: 450 II-GMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
           +I G C R            L  +S    +E  W
Sbjct: 365 MIDGYCKR------------LKLDSALQLVERMW 386



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 176/410 (42%), Gaps = 40/410 (9%)

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA---CGQSGAV 213
           G  P    Y A++D         +A   Y  M S  V PD       I +    G+    
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            R    L E   +V P     +    +++     G    AR ++  + + ++      + 
Sbjct: 65  LRLLRSLPERGCDVKP-----LAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFN 119

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             ++   Q GD   + ++   + K+G+  ++   +  I      G++E A  ++ E+ + 
Sbjct: 120 NVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALV-ESMDA 178

Query: 334 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            I+  +++Y++LM G C ++K  Q+A +    M +    P   T N +I   C  D L +
Sbjct: 179 YIAPDVVTYNTLMRGLCKDSK-VQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQE 237

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
             E+L D    G  P+ +TY  L+     + DVE  L L ++A+   + P+LV++  ++ 
Sbjct: 238 ATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVK 297

Query: 452 GMCSRR--YEKARTLNEHVLSFNSGRPQIENKWT--------------SLALMVYREAIV 495
           G+C +       + +NE V   +   P I   WT              S A +V  +AIV
Sbjct: 298 GLCRQGLILHALQVMNEMV--EDGCHPDI---WTYNIVINGLCKMGNISDAAVVMNDAIV 352

Query: 496 AGTIPTVEVVSKVLG--CLQLPYNADIRERLVENL---GVSADALKRSNL 540
            G +P V   + ++   C +L  ++ +  +LVE +   G++ DA+  +++
Sbjct: 353 KGYLPDVFTFNTMIDGYCKRLKLDSAL--QLVERMWMYGIAPDAITYNSV 400


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/439 (22%), Positives = 205/439 (46%), Gaps = 6/439 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L R+G + E   L + ++  G+     +Y+       K+++  + +  + ++     +P 
Sbjct: 327 LCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPD 386

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             TFN+L+         E + ++L+ +  +GL  D  LY  ++++   +G++D   ++  
Sbjct: 387 CVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQ 446

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           E++  G+  +V  + +LI   ++AG   KAF AY IM      P     N+L+    + G
Sbjct: 447 ELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKG 506

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +  A  +L  M  +  P++    T+  L+        ++ A+ ++K + +  I      
Sbjct: 507 WLQEARILLYRMLEKGFPINKVAYTV--LLDGYFKMNNLEGAQFLWKEMKERGIYPDAVA 564

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +T  I+  S+ G+ E A  V+ +M+  G +P+    ++LI      G+V  A ++ +E +
Sbjct: 565 FTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMR 624

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+     +++ ++         + A+E +  M+ I L P + T N LI   C    + 
Sbjct: 625 QKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMV 684

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              E+++ M S GL P+  TY+  +    R   +   +++L Q    G++P+ V +  ++
Sbjct: 685 GAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTML 744

Query: 452 -GMCSRRYEKARTLNEHVL 469
            G+CS   ++A  L   +L
Sbjct: 745 SGICSDILDRAMILTAKLL 763



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 166/383 (43%), Gaps = 41/383 (10%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A +VLR+++  G++      T L+    + G   +++++F +M+  G  P+  T+ A+I 
Sbjct: 196 ALEVLRMMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIFKGPRPSNLTFNAMIC 255

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G  +  +V        +M      PD V FN LI AC   G    A D L  M      V
Sbjct: 256 GFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVRS--GV 313

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
           +P   T   ++ A    G V  AR+++  I    I     +Y   ++   +  +   A  
Sbjct: 314 EPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASL 373

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGH---------------------------------- 316
           +Y++M   GV PD V  + L+   GH                                  
Sbjct: 374 LYEEMRTTGVSPDCVTFNILV--WGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSS 431

Query: 317 ---AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              AG+++ A ++LQE   +G+++ +++++SL+GA S A    KA E Y  M      P+
Sbjct: 432 LCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPS 491

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
            ST N+L+  LC    L +   +L  M   G   N + Y++LL    + +++E    L  
Sbjct: 492 SSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWK 551

Query: 434 QAKEDGVIPNLVMFKCIIGMCSR 456
           + KE G+ P+ V F  +I   S+
Sbjct: 552 EMKERGIYPDAVAFTALIDGLSK 574



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 4/253 (1%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           V + LI   G +G  ++  D +   +A     + D   +  L++   N G    A EV +
Sbjct: 146 VVSWLIARVG-TGRTNKIVDFMWRNHAMY---ESDFSVLNTLLRGFLNVGMGFEALEVLR 201

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
           M+    ++      TI +    + GD+     ++ DM  KG  P  +  +A+I       
Sbjct: 202 MMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIFKGPRPSNLTFNAMICGFCRQH 261

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +V     +L        S  +++++ L+ AC        A++    M    ++P+V+T  
Sbjct: 262 RVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFT 321

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            ++ ALC    + +  ++   ++ +G+ PN   Y+ L+    +  +V    +L  + +  
Sbjct: 322 TILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTT 381

Query: 439 GVIPNLVMFKCII 451
           GV P+ V F  ++
Sbjct: 382 GVSPDCVTFNILV 394


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 176/386 (45%), Gaps = 10/386 (2%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           +L+ F+++    A+  D + + ++ + +Q +   K +  +YT +I+   + G ++   E+
Sbjct: 111 SLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEI 170

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM + G+  +V +Y ALI+   + GQ   +      M+ + V P+ + +N +I AC +
Sbjct: 171 FDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACAR 230

Query: 210 SGAVDRA--FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            G +D      + AEM  E   V PD +T   L+ ACA  G  D A  V+K + +  I  
Sbjct: 231 -GDLDWEGLLGLFAEMRHE--GVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVP 287

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y+  +    + G  E    +  +M  +G +PD    + LI+     G ++ A ++ 
Sbjct: 288 EITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVF 347

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++ +  G      +YS L+        +    EL+  MK    +P  +T N LI    +G
Sbjct: 348 KQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEG 407

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
               + + +  D+    + PN  TY  L+ AC +    E    +L      G++P+   +
Sbjct: 408 GYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAY 467

Query: 448 KCIIGMCSRRYEKARTLNEHVLSFNS 473
             +I      Y +A   +E +++FN+
Sbjct: 468 SGLI----EAYGQAALYDEALVAFNT 489



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 167/411 (40%), Gaps = 8/411 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G++ +   LL++ME +G L     Y+           +IKEA   FK +      P  ST
Sbjct: 303 GKLEKVAMLLKEMESEGYLPDISSYNV-LIEAHAKLGSIKEAMDVFKQMQAAGCVPNAST 361

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +++L+++       +   ++   ++E+  + D   Y  LI    + G    +  +FH++V
Sbjct: 362 YSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLV 421

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           +  I+PN+ TY  L+  C K G    A      M  K + P    ++ LI A GQ+   D
Sbjct: 422 DENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYD 481

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A      MN        D  T  +L+   A  G       +   + +Y I    + ++ 
Sbjct: 482 EALVAFNTMNEVGSKSTID--TYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSG 539

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I    Q+G +E A   + +M K     DE  L  ++     AG V+ + E   E K  G
Sbjct: 540 IIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASG 599

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I   ++ Y  ++   +    W  A EL + M   ++      +  +I    D D   + +
Sbjct: 600 ILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMV 659

Query: 395 EVLSD-MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           E + D + + G       Y+ LL A            +L++A + G+ P L
Sbjct: 660 EYVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPEL 710



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/439 (21%), Positives = 180/439 (41%), Gaps = 47/439 (10%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           +  V   + SY  LI    R G+    ++LLE M+R+ +      Y+    N C      
Sbjct: 176 SQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNT-VINACARGDLD 234

Query: 78  KEAF-RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            E     F  + +    P L T+N L+S CA+    + A  V + + E G+  +   Y+ 
Sbjct: 235 WEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSY 294

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           ++ T  K GK++ +  +  EM + G  P++ +Y  LI+  AK G + +A   +  M++  
Sbjct: 295 IVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAG 354

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
             P+   ++ L+   G+ G  D   ++  +M       +PD  T   L++     G    
Sbjct: 355 CVPNASTYSILLNLYGKHGRYDDVRELFLQMKE--SSAEPDATTYNILIRVFGEGGYFKE 412

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
              ++  +   NI    E Y   +  C + G  E A  +   M  KG++P     S LI+
Sbjct: 413 VVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIE 472

Query: 313 FAGHA----------------------------------GKVEAAFE-ILQEAKNQGISV 337
             G A                                  G +   FE IL   +  GIS 
Sbjct: 473 AYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISR 532

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
              S+S ++     +  +++A++ +  M+ ++ +    T+  ++   C    + ++ E  
Sbjct: 533 NAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQF 592

Query: 398 SDMKSLGLCPNTITYSILL 416
            ++K+ G+ P+ + Y ++L
Sbjct: 593 IEIKASGILPSVLCYCMML 611



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 170/465 (36%), Gaps = 102/465 (21%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY---------HARF 67
           Y  D+S    SYN LI    + G I E +D+ + M+  G +     Y         H R+
Sbjct: 320 YLPDIS----SYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRY 375

Query: 68  FNVCKSQKAIKEA---------------------FR-----FFKLVP---NPTLSTFNML 98
            +V +    +KE+                     F+     F  LV    +P + T+  L
Sbjct: 376 DDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGL 435

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           +  C      E A ++L  +   G+    K Y+ LI    ++   D     F+ M   G 
Sbjct: 436 VFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGS 495

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           +  + TY +LI   A+ G   +       MR   +  +   F+ +I    QSG  + A  
Sbjct: 496 KSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIK 555

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
              EM  E    + D  T+  ++     AG VD ++E +  I    I  +   Y + +  
Sbjct: 556 AFVEM--EKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAV 613

Query: 279 CSQTGDWEFACSVYDDMTK--------------KGVIPDEV------------------- 305
            ++ G W+ A  + D+M K              KG   D+                    
Sbjct: 614 YAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCGF 673

Query: 306 ---FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ----KA 358
              F + L++     G+   A  +L EA  +G+   +   S L+ +    + W+     A
Sbjct: 674 GMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRQSKLVWSVDVHRMWEGGAYTA 733

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           + L+           V+ MN +   L DG+ LP+   V+    SL
Sbjct: 734 VSLW-----------VNKMNEM---LMDGEDLPQLAAVVVGRGSL 764


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 161/362 (44%), Gaps = 5/362 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +N+L++          A  +   +++ GL+     + TLI    KS  +D  F +
Sbjct: 221 PKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRL 280

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M    I P+V TY  LI G  K G++  A   +  M+ + ++P+ + F ALI    +
Sbjct: 281 KKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYR 340

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           S  +D A +   +M      V PD +    L+      G V++AR++   +    +K   
Sbjct: 341 SRRMDSAMNTYHQM--LTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDK 398

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  I+   + GD E A  +   M ++GV+ D V  +ALI      G+V  A   L+E
Sbjct: 399 ITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLRE 458

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+     +Y+ ++       N +   +L + M+    KP V T N L+  LC   Q
Sbjct: 459 MVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQ 518

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           +     +L  M +LG+ P+ ITY+ILL    +    E    LL    E G+I +   +  
Sbjct: 519 MKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAED---LLKLRNEKGLIVDYAYYTS 575

Query: 450 II 451
           ++
Sbjct: 576 LV 577



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 168/387 (43%), Gaps = 15/387 (3%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCA-------SSKDSEGAFQVLRLVQEAGLKADCKL 129
           + +A + F+LV N   S F +    C        +S      +     + E G     + 
Sbjct: 169 VSDAIQCFRLVRN---SNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQY 225

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  LI    K G +     +F+E+   G+ P   ++  LI+G  K+  + + F     M 
Sbjct: 226 YNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTME 285

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
              + PD   ++ LI    + G +D A  +  EM  +   + P+ IT  AL+     + +
Sbjct: 286 ENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEM--QQRGLRPNGITFTALIDGQYRSRR 343

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D A   Y  +    +K    +Y   +N   + GD   A  + D+M   G+ PD++  + 
Sbjct: 344 MDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTT 403

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 368
           LID     G +E+A EI +    +G+ +  +++++L+ G C + +       L E M   
Sbjct: 404 LIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLRE-MVEA 462

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            +KP  +T   +I   C    +    ++L +M+  G  P  ITY++L+    ++  ++  
Sbjct: 463 GMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNA 522

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-GMC 454
            MLL      GV P+ + +  ++ G C
Sbjct: 523 NMLLEAMLNLGVTPDDITYNILLEGHC 549



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/331 (22%), Positives = 138/331 (41%), Gaps = 48/331 (14%)

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHI 235
           A  F A  I+ +   +    VF+AL+ A   SG V  A   F ++   N ++    P H 
Sbjct: 137 ASVFAA--ILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQI----PFH- 189

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
             G L+    N+         Y  I +Y      + Y I IN   + G    A  +++++
Sbjct: 190 GCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEI 249

Query: 296 TKKG-----------------------------------VIPDEVFLSALIDFAGHAGKV 320
            K+G                                   + PD    S LI      G++
Sbjct: 250 RKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRL 309

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A ++  E + +G+    I++++L+     ++    A+  Y  M ++ +KP +   N L
Sbjct: 310 DVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTL 369

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           +  LC    + K  +++ +MK +G+ P+ ITY+ L+    ++ D+E  + +     E+GV
Sbjct: 370 LNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGV 429

Query: 441 IPNLVMFKCII-GMC--SRRYEKARTLNEHV 468
           + + V F  +I G C   R  +  RTL E V
Sbjct: 430 VLDNVAFTALISGFCRDGRVRDAERTLREMV 460


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 176/386 (45%), Gaps = 10/386 (2%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           +L+ F+++    A+  D + + ++ + +Q +   K +  +YT +I+   + G ++   E+
Sbjct: 111 SLNDFSLVFKEFAARGDWQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEI 170

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM + G+  +V +Y ALI+   + GQ   +      M+ + V P+ + +N +I AC +
Sbjct: 171 FDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACAR 230

Query: 210 SGAVDRA--FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            G +D      + AEM  E   V PD +T   L+ ACA  G  D A  V+K + +  I  
Sbjct: 231 -GDLDWEGLLGLFAEMRHE--GVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVP 287

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y+  +    + G  E    +  +M  +G +PD    + LI+     G ++ A ++ 
Sbjct: 288 EITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVF 347

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++ +  G      +YS L+        +    EL+  MK    +P  +T N LI    +G
Sbjct: 348 KQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEG 407

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
               + + +  D+    + PN  TY  L+ AC +    E    +L      G++P+   +
Sbjct: 408 GYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAY 467

Query: 448 KCIIGMCSRRYEKARTLNEHVLSFNS 473
             +I      Y +A   +E +++FN+
Sbjct: 468 SGLI----EAYGQAALYDEALVAFNT 489



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 167/411 (40%), Gaps = 8/411 (1%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G++ +   LL++ME +G L     Y+           +IKEA   FK +      P  ST
Sbjct: 303 GKLEKVAMLLKEMESEGYLPDISSYNV-LIEAHAKLGSIKEAMDVFKQMQAAGCVPNAST 361

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +++L+++       +   ++   ++E+  + D   Y  LI    + G    +  +FH++V
Sbjct: 362 YSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLV 421

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           +  I+PN+ TY  L+  C K G    A      M  K + P    ++ LI A GQ+   D
Sbjct: 422 DENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYD 481

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A      MN        D  T  +L+   A  G       +   + +Y I    + ++ 
Sbjct: 482 EALVAFNTMNEVGSKSTID--TYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSG 539

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I    Q+G +E A   + +M K     DE  L  ++     AG V+ + E   E K  G
Sbjct: 540 IIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASG 599

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I   ++ Y  ++   +    W  A EL + M   ++      +  +I    D D   + +
Sbjct: 600 ILPSVLCYCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMV 659

Query: 395 EVLSD-MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           E + D + + G       Y+ LL A            +L++A + G+ P L
Sbjct: 660 EYVFDKLNAEGCGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPEL 710



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/439 (21%), Positives = 180/439 (41%), Gaps = 47/439 (10%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           +  V   + SY  LI    R G+    ++LLE M+R+ +      Y+    N C      
Sbjct: 176 SQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNT-VINACARGDLD 234

Query: 78  KEAF-RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            E     F  + +    P L T+N L+S CA+    + A  V + + E G+  +   Y+ 
Sbjct: 235 WEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSY 294

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           ++ T  K GK++ +  +  EM + G  P++ +Y  LI+  AK G + +A   +  M++  
Sbjct: 295 IVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAG 354

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
             P+   ++ L+   G+ G  D   ++  +M       +PD  T   L++     G    
Sbjct: 355 CVPNASTYSILLNLYGKHGRYDDVRELFLQMKE--SSAEPDATTYNILIRVFGEGGYFKE 412

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
              ++  +   NI    E Y   +  C + G  E A  +   M  KG++P     S LI+
Sbjct: 413 VVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIE 472

Query: 313 FAGHA----------------------------------GKVEAAFE-ILQEAKNQGISV 337
             G A                                  G +   FE IL   +  GIS 
Sbjct: 473 AYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISR 532

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
              S+S ++     +  +++A++ +  M+ ++ +    T+  ++   C    + ++ E  
Sbjct: 533 NAKSFSGIIEGYRQSGQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQF 592

Query: 398 SDMKSLGLCPNTITYSILL 416
            ++K+ G+ P+ + Y ++L
Sbjct: 593 IEIKASGILPSVLCYCMML 611



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 170/465 (36%), Gaps = 102/465 (21%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY---------HARF 67
           Y  D+S    SYN LI    + G I E +D+ + M+  G +     Y         H R+
Sbjct: 320 YLPDIS----SYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRY 375

Query: 68  FNVCKSQKAIKEA---------------------FR-----FFKLVP---NPTLSTFNML 98
            +V +    +KE+                     F+     F  LV    +P + T+  L
Sbjct: 376 DDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGL 435

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           +  C      E A ++L  +   G+    K Y+ LI    ++   D     F+ M   G 
Sbjct: 436 VFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGS 495

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           +  + TY +LI   A+ G   +       MR   +  +   F+ +I    QSG  + A  
Sbjct: 496 KSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEAIK 555

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
              EM  E    + D  T+  ++     AG VD ++E +  I    I  +   Y + +  
Sbjct: 556 AFVEM--EKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCYCMMLAV 613

Query: 279 CSQTGDWEFACSVYDDMTK--------------KGVIPDEV------------------- 305
            ++ G W+ A  + D+M K              KG   D+                    
Sbjct: 614 YAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLNAEGCGF 673

Query: 306 ---FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ----KA 358
              F + L++     G+   A  +L EA  +G+   +   S L+ +    + W+     A
Sbjct: 674 GMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRQSKLVWSVDVHRMWEGGAYTA 733

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           + L+           V+ MN +   L DG+ LP+   V+    SL
Sbjct: 734 VSLW-----------VNKMNEM---LMDGEDLPQLAAVVVGRGSL 764


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 159/348 (45%), Gaps = 6/348 (1%)

Query: 77  IKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           I+ A R  +++ N    P + T+N ++        ++ AF+  R ++   +  D   Y T
Sbjct: 183 IESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMT 242

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           LI  C   G  D    ++HEM   G+E   H Y  +I G  K G+  + +  +  M  K 
Sbjct: 243 LIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKG 302

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
            K +  ++ ALI +  + G +  A  +   M  E   ++PD +T G ++     +G++D 
Sbjct: 303 CKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKE--GLEPDVVTYGVVVNCMCKSGRLDE 360

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A E  +      +     +Y+  I+   + G    A  ++++M KKG  PD    +ALID
Sbjct: 361 AMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALID 420

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                GK + A    +  +++G    + +Y+ ++         ++AL++++ M    + P
Sbjct: 421 ALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITP 480

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           T +   AL   LC   ++ +  ++L ++  +G+ P T    +L V C+
Sbjct: 481 TAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPETAFEDMLNVLCK 528



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 172/423 (40%), Gaps = 45/423 (10%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNML-----MSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           QK    A +FF         T N+      + V A + D +    V    +  G   +  
Sbjct: 74  QKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVKSVFCKFRGMGFLMNVS 133

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
              +LI +    G V+ +  V+  M   G+EP++ TY  L++G   +  +  A     +M
Sbjct: 134 AANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVM 193

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
            +  + PD V +N +I    Q G   +AF+   +M  E+  V PD IT   L++AC   G
Sbjct: 194 ENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDM--ELRNVAPDKITYMTLIQACYAEG 251

Query: 249 QVDRAREVY------------------------------------KMIHKYNIKGTPEVY 272
             D    +Y                                    KMI K   K    +Y
Sbjct: 252 DFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQK-GCKVNVAIY 310

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  I+  ++ G+   A  +++ M K+G+ PD V    +++    +G+++ A E L+  + 
Sbjct: 311 TALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRV 370

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G++V  + YSSL+     A    +A +L+E M      P     NALI AL    +  +
Sbjct: 371 NGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDE 430

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI-I 451
            +     M+  G      TY+I++    R+   E  L +     + G+ P    F+ + I
Sbjct: 431 ALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSI 490

Query: 452 GMC 454
           G+C
Sbjct: 491 GLC 493



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 130/317 (41%), Gaps = 38/317 (11%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            +V+    +Y  LI+    +G    C+ L  +M+  GL      Y      +CK  K ++
Sbjct: 231 RNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVE 290

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
               F K++                                + G K +  +YT LI + A
Sbjct: 291 GYAVFEKMI--------------------------------QKGCKVNVAIYTALIDSNA 318

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G +     +F  M   G+EP+V TYG +++   K+G++ +A       R   V  + +
Sbjct: 319 KCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAM 378

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           ++++LI   G++G V  A  +  EM  +  P  PD     AL+ A A  G+ D A   +K
Sbjct: 379 LYSSLIDGLGKAGRVHEAEKLFEEMVKKGCP--PDSYCYNALIDALAKCGKTDEALAFFK 436

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +       T   YTI IN   +    E A  ++D M  KG+ P      AL      +G
Sbjct: 437 RMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSG 496

Query: 319 KVEAAFEILQEAKNQGI 335
           KV  A ++L E    G+
Sbjct: 497 KVARACKLLDELAPMGV 513



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 126/315 (40%), Gaps = 18/315 (5%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           + Y  +I+  +  GD +   SV+      G + +    ++LI   G  G VE    + + 
Sbjct: 98  QCYVSSIDVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRG 157

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G+   + +Y+ L+    N+   + A  + E M++ K+ P V T N +I   C   +
Sbjct: 158 MKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGK 217

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV-IPNLVMFK 448
             K  E   DM+   + P+ ITY  L+ AC  + D ++ L L  +  E+G+ IP      
Sbjct: 218 TQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSL 277

Query: 449 CIIGMC------------SRRYEKARTLNEHVLS-FNSGRPQIENKWTSLALMVYREAIV 495
            I G+C             +  +K   +N  + +       +  N     A++++     
Sbjct: 278 VIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGN--MGEAMLLFERMKK 335

Query: 496 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--R 553
            G  P V     V+ C+      D     +E   V+  A+      SLIDG G+      
Sbjct: 336 EGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHE 395

Query: 554 AFSLLEEAASFGIVP 568
           A  L EE    G  P
Sbjct: 396 AEKLFEEMVKKGCPP 410



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 8/191 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---- 90
           L + GR+ E   L E+M +KG       Y+A    + K  K   EA  FFK + +     
Sbjct: 387 LGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKT-DEALAFFKRMEDEGCDQ 445

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+ T+ ++++       +E A ++  ++ + G+      +  L      SGKV    ++ 
Sbjct: 446 TVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLL 505

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG-AYGIMRSKNVKPDRVVFNALITACGQ 209
            E+   G+ P    +  +++   KAG++ +A   A G +      P RV    LI A  +
Sbjct: 506 DELAPMGVIPET-AFEDMLNVLCKAGRIKEACKLADGFVDRGREIPGRVR-TVLINALRK 563

Query: 210 SGAVDRAFDVL 220
           +G  D A  ++
Sbjct: 564 AGNADLALKLM 574


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 173/359 (48%), Gaps = 4/359 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+  +++    S ++  A  + R ++E  +KA    Y+ +I +  K G +D    +F+EM
Sbjct: 211 TYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEM 270

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              GI+ +V  Y ++I G    G+          M  +N+ P+ V F+ALI    + G +
Sbjct: 271 EMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKL 330

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++  EM A    + PD IT  +L+       ++  A ++  ++     +     Y+
Sbjct: 331 LEAKELYNEMVA--RGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYS 388

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I IN   +    +    ++ +++ KG++ D V  + L+     +GK+  A E+ QE  ++
Sbjct: 389 ILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSR 448

Query: 334 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           G+   +++Y  L+ G C N +  QKALE++E M+  ++   +   N +I  +C+  ++  
Sbjct: 449 GVPPSVVTYGILLDGLCDNGE-LQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDD 507

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              +   +   G+ P+ +TY++++    +K  +    ML  + KEDG  P+   +  +I
Sbjct: 508 AWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILI 566



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 201/452 (44%), Gaps = 40/452 (8%)

Query: 25  VSEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +SE   SY   +R G    +++E IDL E M             +R              
Sbjct: 30  ISEAKVSYKERLRNGIVDIKVNEAIDLFESM-----------IQSR-------------- 64

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                  P P+L  F+ L S  A  K+ +      + +   G++ +      +I    + 
Sbjct: 65  -------PLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRK 117

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            K+   F V    +  G EPN  T+  LI+G    G+V++A      M     +P+ V  
Sbjct: 118 RKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTV 177

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N LI      G V  A  ++  M    +  + + IT G ++     +G    A ++++ +
Sbjct: 178 NTLINGLCLKGRVTEALVLIDRMVK--YGCEANEITYGPVLNRMCKSGNTALALDLFRKM 235

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            + +IK +   Y+I I+   + G+ + A S++++M  KG+  D V  S++I    + G+ 
Sbjct: 236 EERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRW 295

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           +   ++L+E   + I   ++++S+L+          +A ELY  M +  + P   T ++L
Sbjct: 296 DDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSL 355

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I   C  ++L +  ++L  M S G  PN +TYSIL+ +  +   V+ G+ L  +    G+
Sbjct: 356 IDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGL 415

Query: 441 IPNLVMFKCII-GMC-SRRYEKARTLNEHVLS 470
           + + V +  ++ G C S +   A+ L + ++S
Sbjct: 416 VADTVTYNTLVQGFCQSGKLNVAKELFQEMVS 447



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 189/430 (43%), Gaps = 13/430 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L  +GR++E + L++ M + G    +  Y      +CKS      A   F+ +   ++
Sbjct: 182 NGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNT-ALALDLFRKMEERSI 240

Query: 93  STFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
               +  S+   S   +G    A  +   ++  G+KAD   Y+++I      G+ D   +
Sbjct: 241 KASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAK 300

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-C 207
           +  EM+   I PNV T+ ALID   K G++ +A   Y  M ++ + PD + +++LI   C
Sbjct: 301 MLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFC 360

Query: 208 GQS--GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
            ++  G  ++  D++     E     P+ +T   L+ +   A +VD    ++  I    +
Sbjct: 361 KENRLGEANQMLDLMVSKGCE-----PNIVTYSILINSYCKAKRVDNGMRLFCEISSKGL 415

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 Y   +    Q+G    A  ++ +M  +GV P  V    L+D     G+++ A E
Sbjct: 416 VADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALE 475

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           I ++ +   + +GI  Y+ ++    NA     A  L+  +    +KP V T N +I  LC
Sbjct: 476 IFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLC 535

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L +   +   MK  G  P+  TY+IL+ A      V   + L+ + K  G   +  
Sbjct: 536 KKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADAS 595

Query: 446 MFKCIIGMCS 455
             K ++ M S
Sbjct: 596 TIKMVVVMLS 605



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 167/370 (45%), Gaps = 7/370 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           + L + G + + + L  +ME KG+      Y +    +C   +    A    +++     
Sbjct: 252 DSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNII 311

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + TF+ L+ V         A ++   +   G+  D   Y++LI    K  ++    ++
Sbjct: 312 PNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQM 371

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              MV+ G EPN+ TY  LI+   KA +V      +  + SK +  D V +N L+    Q
Sbjct: 372 LDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQ 431

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           SG ++ A ++  EM +   P  P  +T G L+    + G++ +A E+++ + K  +    
Sbjct: 432 SGKLNVAKELFQEMVSRGVP--PSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGI 489

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +Y I I+        + A S++  ++ KGV PD +  + +I      G +  A  + ++
Sbjct: 490 GIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRK 549

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G +    +Y+ L+ A         ++EL E MK        ST+  ++  L DG +
Sbjct: 550 MKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVVVMLSDG-R 608

Query: 390 LPKT-MEVLS 398
           L KT +++LS
Sbjct: 609 LDKTFLDMLS 618



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 110/267 (41%), Gaps = 16/267 (5%)

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           KV  A ++ +          +I +S L  A +  K +   L   + M    ++  + TMN
Sbjct: 49  KVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMN 108

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            +I   C   +L     V+      G  PNTIT+S L+     +  V   + L+ +  E 
Sbjct: 109 IMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEM 168

Query: 439 GVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQI----------ENKWTSLA 486
              PN+V    +I G+C + R  +A  L + ++ +     +I          ++  T+LA
Sbjct: 169 KYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALA 228

Query: 487 LMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL---VENLGVSADALKRSNLCSL 543
           L ++R+        +V   S V+  L    N D    L   +E  G+ AD +  S++   
Sbjct: 229 LDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGG 288

Query: 544 IDGFGEYDPRAFSLLEEAASFGIVPCV 570
           +   G +D  A  +L E     I+P V
Sbjct: 289 LCNDGRWDDGA-KMLREMIGRNIIPNV 314


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 163/356 (45%), Gaps = 10/356 (2%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCAKSGKVDA 145
           P + T+ +L+ + CA S    G  Q ++L+ E G    K D   Y  L+    K G++D 
Sbjct: 14  PDVITYTILIEATCAES----GVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDE 69

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             +  + M + G +PNV T+  ++      G+   A      M  K   P  V FN LI 
Sbjct: 70  AIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILIN 129

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G + RA D+L +M    H   P+ ++   L+       ++DRA +  +++     
Sbjct: 130 FLCRKGLLGRAIDILEKM--PTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGC 187

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 Y   +    + G  + A  + + ++ KG  P  +  + +ID     GK + A E
Sbjct: 188 YPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVE 247

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L E + +G+   +I+YSSL+   S     ++A++ +  ++   +KP   T N+++  LC
Sbjct: 248 LLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLC 307

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
              Q  + ++ L+ M S G  P  ++Y+IL+     +   +  L LL++    GV+
Sbjct: 308 KAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVV 363



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 124/267 (46%), Gaps = 4/267 (1%)

Query: 191 KNVKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           K   PD + +  LI A C +SG V +A  +L EM +      PD +T   L+      G+
Sbjct: 10  KECYPDVITYTILIEATCAESG-VGQAMKLLDEMGS--RGCKPDVVTYNVLVNGMCKEGR 66

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D A +    +  Y  +     + I +     TG W  A  +  +M +KG  P  V  + 
Sbjct: 67  LDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNI 126

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI+F    G +  A +IL++    G +   +SY+ L+      K   +A++  E M S  
Sbjct: 127 LINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRG 186

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P + T N ++TALC   ++   +E+L+ + S G  P  ITY+ ++    +    +  +
Sbjct: 187 CYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAV 246

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            LL + +  G+ P+++ +  +I   SR
Sbjct: 247 ELLHEMRGKGLKPDVITYSSLIAGLSR 273



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 144/313 (46%), Gaps = 11/313 (3%)

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDG-CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            EV    +     P+V TY  LI+  CA++G V +A      M S+  KPD V +N L+ 
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESG-VGQAMKLLDEMGSRGCKPDVVTYNVLVN 59

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYN 264
              + G +D A   L  M +  +   P+ IT   ++++ C+    +D  + + +M+ K  
Sbjct: 60  GMCKEGRLDEAIKFLNSMPS--YGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRK-- 115

Query: 265 IKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              +P V T  I IN   + G    A  + + M   G  P+ +  + L+       K++ 
Sbjct: 116 -GCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDR 174

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A + L+   ++G    I++Y++++ A         A+EL   + S    P + T N +I 
Sbjct: 175 AIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVID 234

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            L    +  + +E+L +M+  GL P+ ITYS L+    R+  VE  +      +  GV P
Sbjct: 235 GLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKP 294

Query: 443 NLVMFKCII-GMC 454
           N   +  I+ G+C
Sbjct: 295 NAFTYNSIMFGLC 307



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 130/307 (42%), Gaps = 40/307 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N + ++GR+ E I  L  M   G       ++    ++C + + +       ++V    +
Sbjct: 59  NGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCS 118

Query: 90  PTLSTFNMLMS-VC----------------------------------ASSKDSEGAFQV 114
           P++ TFN+L++ +C                                     K  + A Q 
Sbjct: 119 PSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQY 178

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
           L ++   G   D   Y T++T   K GKVDA  E+ +++ + G  P + TY  +IDG +K
Sbjct: 179 LEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSK 238

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
            G+  +A      MR K +KPD + +++LI    + G V+ A     ++  E   V P+ 
Sbjct: 239 VGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDV--EGFGVKPNA 296

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
            T  ++M     A Q DRA +    +     K T   YTI I   +  G  + A  + ++
Sbjct: 297 FTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNE 356

Query: 295 MTKKGVI 301
           +  +GV+
Sbjct: 357 LCSRGVV 363



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 7/209 (3%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-- 75
            H  +    SYN L+    ++ ++   I  LE M  +G       Y+     +CK  K  
Sbjct: 149 THGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVD 208

Query: 76  -AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            A++   +      +P L T+N ++   +    ++ A ++L  ++  GLK D   Y++LI
Sbjct: 209 AAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLI 268

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
              ++ GKV+   + FH++   G++PN  TY +++ G  KA Q  +A      M SK  K
Sbjct: 269 AGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCK 328

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEM 223
           P  V +  LI      G    A ++L E+
Sbjct: 329 PTEVSYTILIEGIANEGLAKEALELLNEL 357



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P V T   LI A C    + + M++L +M S G  P+ +TY++L+    ++  ++  +  
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 432 LSQAKEDGVIPNLVMFKCII-GMCS--RRYEKARTLNEHV 468
           L+     G  PN++    I+  MCS  R  +  + L E V
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMV 113


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 182/429 (42%), Gaps = 39/429 (9%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV+    + + L +  RI E   L++ M  +G       Y      +C+  K + EA   
Sbjct: 304 DVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGK-VDEARML 362

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGK 142
              VPNP +  FN L++   S    + A  V+   +   G   D   Y TLI    K G 
Sbjct: 363 LNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGY 422

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           + +  E+ +EM   G EPNV TY  LID   K G++ +A      M  K +  + V +N 
Sbjct: 423 LVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNC 482

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI+A  +   V  A ++  +M+++     PD  T  +L+       +             
Sbjct: 483 LISALCKDEKVQDALNMFGDMSSK--GCKPDIFTFNSLIFGLCKVNK------------- 527

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                                 +E A  +Y DM  +GVI + +  + LI      G ++ 
Sbjct: 528 ----------------------FEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQE 565

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A +++ +   +G  +  I+Y+ L+ A   A N +K L L+E M S  L P   + N LI 
Sbjct: 566 ALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN 625

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC    +   +E L DM   GL P+ +TY+ L+    +    +  L L  + + +G+ P
Sbjct: 626 GLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICP 685

Query: 443 NLVMFKCII 451
           + + +  +I
Sbjct: 686 DAITYNTLI 694



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 133/548 (24%), Positives = 236/548 (43%), Gaps = 49/548 (8%)

Query: 56  LLDMDKVYHA----RFFNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMS 100
           LLDM  VY      R +NV      +  A    K+VPN           PT+ TF ++M 
Sbjct: 187 LLDMRGVYSCEPTFRSYNVVLD---VLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMK 243

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
                 + + A  +L+ +   G   +  +Y TLI   +K G+V+ + ++  EM+  G  P
Sbjct: 244 ALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIP 303

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           +V+T+   I G  K  ++ +A      M  +   P+   +  L+    + G VD A  +L
Sbjct: 304 DVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLL 363

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK--YNIKGTPEVY---TIA 275
            ++       +P+ +    L+    + G++D A+ V   +H+   ++   P+++   T+ 
Sbjct: 364 NKVP------NPNVVLFNTLINGYVSRGRLDEAKAV---MHESMLSVGCGPDIFTYNTLI 414

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           +  C + G    A  + ++M  KG  P+ +  + LID     G++E A  +L E   +G+
Sbjct: 415 LGLCKK-GYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGL 473

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           ++  + Y+ L+ A    +  Q AL ++  M S   KP + T N+LI  LC  ++  + + 
Sbjct: 474 ALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALG 533

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           +  DM   G+  NTITY+ L+ A  R+  ++  L L++     G   + + +  +I    
Sbjct: 534 LYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALC 593

Query: 456 R--RYEKARTLNEHVLS--FNSGRPQIENKWTSL--------ALMVYREAIVAGTIPTVE 503
           R    EK   L E ++S   N            L        AL   R+ I  G  P + 
Sbjct: 594 RAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIV 653

Query: 504 VVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEE 560
             + ++  L     A     L + L   G+  DA+  + L S     G +D  A  LL  
Sbjct: 654 TYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDD-AHLLLSR 712

Query: 561 AASFGIVP 568
               G +P
Sbjct: 713 GVDSGFIP 720



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 135/290 (46%), Gaps = 21/290 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           +R  ++GR+ E  ++L++M  KGL      Y+     +CK +K +++A   F  + +   
Sbjct: 450 DRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEK-VQDALNMFGDMSSKGC 508

Query: 90  -PTLSTFN-MLMSVCASSKDSE--GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
            P + TFN ++  +C  +K  E  G +Q + L    G+ A+   Y TLI    + G +  
Sbjct: 509 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLL---EGVIANTITYNTLIHAFLRRGAMQE 565

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++ ++M+  G   +  TY  LI    +AG + K    +  M SK + P+ +  N LI 
Sbjct: 566 ALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILIN 625

Query: 206 ACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
              ++G +  A + L +M   +H  + PD +T  +L+      G   RA+E   +  K  
Sbjct: 626 GLCRTGNIQHALEFLRDM---IHRGLTPDIVTYNSLINGLCKTG---RAQEALNLFDKLQ 679

Query: 265 IKGT-PE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           ++G  P+   Y   I+   + G ++ A  +       G IP+EV    L+
Sbjct: 680 VEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILV 729



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 127/284 (44%), Gaps = 11/284 (3%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVY 257
           V+  LI   G +G       +L +M  E   V  + + I  +MK    AG   +A R + 
Sbjct: 131 VYYMLIDKLGAAGEFKTTDALLMQMKQE-GIVFRESLFI-LIMKHYGRAGLPGQATRLLL 188

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
            M   Y+ + T   Y + ++        +   +V+ +M  KG+ P       ++      
Sbjct: 189 DMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLV 248

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            +V++A  +L++    G     I Y +L+ A S      + L+L E M  +   P V+T 
Sbjct: 249 NEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTF 308

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N  I  LC   ++ +  +++  M   G  PN+ TY +L+    R   V+   MLL++   
Sbjct: 309 NDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN 368

Query: 438 DGVIPNLVMFKCII-GMCSR-RYEKAR-TLNEHVLSFNSGRPQI 478
               PN+V+F  +I G  SR R ++A+  ++E +LS   G P I
Sbjct: 369 ----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCG-PDI 407



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 4/204 (1%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           +VY + I+     G+++   ++   M ++G++  E     ++   G AG    A  +L +
Sbjct: 130 DVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLD 189

Query: 330 AKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            +          SY+ ++         +    ++  M S  + PTV T   ++ ALC  +
Sbjct: 190 MRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVN 249

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++     +L DM   G  PN I Y  L+ A  +   V   L LL +    G IP++  F 
Sbjct: 250 EVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFN 309

Query: 449 -CIIGMCS--RRYEKARTLNEHVL 469
             I G+C   R +E A+ ++  +L
Sbjct: 310 DAIHGLCKMLRIHEAAKLVDRMLL 333


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 148/314 (47%), Gaps = 3/314 (0%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           L ++ G   D   YTT++    ++ +  A+ ++  +MV  G +PNV TY  LI    +A 
Sbjct: 370 LKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRAN 429

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
            +  A   +  M+    +PDRV +  LI    ++G +D A ++   M A    + PD  T
Sbjct: 430 YLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAA--GLSPDTFT 487

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              ++     AG +  A +++  + +         Y I I   ++  +++ A  +Y DM 
Sbjct: 488 YSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQ 547

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
             G  PD+V  S +++  GH G ++ A  +  E K +        Y  L+     A N +
Sbjct: 548 SAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVE 607

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           KA + Y+ M +  L+P V T N+L++A     +L     +L  M  LGL P+  TY++LL
Sbjct: 608 KAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYTLLL 667

Query: 417 VAC-ERKDDVEVGL 429
             C E +   ++G+
Sbjct: 668 SCCTEARSPYDMGI 681



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 135/301 (44%), Gaps = 3/301 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L+     +     A  V   +Q  G + D   Y TLI   AK+G +D   E+
Sbjct: 413 PNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEM 472

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M  AG+ P+  TY  +I+   KAG +A A   +  M  +   P+ V +N +I    +
Sbjct: 473 YQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAK 532

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +     A  +  +M +      PD +T   +M+   + G +D A  V+  + + N     
Sbjct: 533 ARNYQSALKLYRDMQSA--GFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDE 590

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY + ++   + G+ E A   Y  M   G+ P+    ++L+       K+  A+ +LQ 
Sbjct: 591 PVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQS 650

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G++  + +Y+ L+  C+ A++    + +Y  + ++   P    + +L +A  DG  
Sbjct: 651 MLELGLNPSLQTYTLLLSCCTEARS-PYDMGIYCELMAVTGHPAHMFLLSLPSAGPDGQN 709

Query: 390 L 390
           +
Sbjct: 710 V 710



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 129/313 (41%), Gaps = 45/313 (14%)

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK----PDRVVFNALITACGQSGA 212
           G   + HTY  ++    +A Q    FGA   +  + VK    P+ V +N LI + G++  
Sbjct: 375 GFNHDGHTYTTMVGILGRAKQ----FGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANY 430

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           ++ A DV  EM  +    +PD +T   L+   A AG +D                     
Sbjct: 431 LNDAVDVFNEM--QRVGCEPDRVTYCTLIDIHAKAGFLD--------------------- 467

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
                         FA  +Y  M   G+ PD    S +I+  G AG + AA ++  E   
Sbjct: 468 --------------FALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVE 513

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           QG    +++Y+ ++   + A+N+Q AL+LY  M+S   +P   T + ++  L     L +
Sbjct: 514 QGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDE 573

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
              V S+MK     P+   Y +L+    +  +VE            G+ PN+     ++ 
Sbjct: 574 AEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLS 633

Query: 453 MCSRRYEKARTLN 465
              R ++ A   N
Sbjct: 634 AFLRVHKLADAYN 646



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 110/249 (44%), Gaps = 33/249 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T+N+++++ A +++ + A ++ R +Q AG + D   Y+ ++      G +D    V
Sbjct: 518 PNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAV 577

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM      P+   YG L+D   KAG V KA+  Y  M +  ++P+    N+L++A  +
Sbjct: 578 FSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLR 637

Query: 210 SGAVDRAFDVLAEM-----NAEVH--------------PVD-------------PDHITI 237
              +  A+++L  M     N  +               P D             P H+ +
Sbjct: 638 VHKLADAYNLLQSMLELGLNPSLQTYTLLLSCCTEARSPYDMGIYCELMAVTGHPAHMFL 697

Query: 238 GALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
            +L  A  +   V D A +   ++H  + +    +    ++   ++G  E A SV++   
Sbjct: 698 LSLPSAGPDGQNVRDHASKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEVAA 757

Query: 297 KKGVIPDEV 305
           ++ V PD V
Sbjct: 758 QRNVYPDAV 766


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 141/328 (42%), Gaps = 38/328 (11%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L  F  L+S   S   +E A+QVL  +   G   D  LYT+LI     +G+V     
Sbjct: 280 EPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARH 339

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF  M+  G  P+  TYG +I   +K G V  A     +M    V PD   +N+L+    
Sbjct: 340 VFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYV 399

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKG 267
           +   VD+AF V   M A    + P+ +T   LM      G+ DRA  ++K M+ K  +  
Sbjct: 400 KLERVDQAFGVYDRMVAS--GIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPP 457

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           T   YTI                                   LID  G AG+V  AF   
Sbjct: 458 TLVSYTI-----------------------------------LIDGLGKAGRVSEAFLQF 482

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           QE  ++GI     +Y+SL+ + + A    +A +L E M  + + P V   +ALIT L D 
Sbjct: 483 QEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDS 542

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             +    +V  +M   G  PN +TY +L
Sbjct: 543 SMVDTAWDVFQEMMKRGCAPNEVTYKVL 570



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 196/462 (42%), Gaps = 43/462 (9%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  +I+      RI E  +L E+++  G       Y A    + K+ + I++  + F+ 
Sbjct: 110 SYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGR-IEDGLKNFEE 168

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      PT +T+ +++     ++    A +V   + + G   D   YTTLI   +K+ K
Sbjct: 169 MSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASK 228

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D   ++   M+  G EP   TYG+++ G  K   + +A      MR +  +P   +F +
Sbjct: 229 MDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTS 288

Query: 203 LITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVD------ 231
           L++     G  + A+ VL EM A                           H  D      
Sbjct: 289 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 348

Query: 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
             PD +T G +++  +  G V+ A E+ +++ K  +      Y   ++   +    + A 
Sbjct: 349 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 408

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA-KNQGISVGIISYSSLMGA 348
            VYD M   G+ P+ V  + L+      GK + AF + +E  + + +   ++SY+ L+  
Sbjct: 409 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDG 468

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
              A    +A   ++ M    + P   T  +LI +L    ++P+  +++ DM  LG+ P+
Sbjct: 469 LGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 528

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              YS L+        V+    +  +  + G  PN V +K +
Sbjct: 529 VQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 570



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 110/491 (22%), Positives = 206/491 (41%), Gaps = 34/491 (6%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQ 119
           +Y +     CK+       FR   + P  +L   ++  ++   A SK  + A ++   ++
Sbjct: 78  LYTSVIHGYCKAGDLDTGYFR--AVTPKASLDVISYTTVIKGLADSKRIDEACELFEELK 135

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
            AG   +   YT +I    K+G+++   + F EM  +   P   TY  +IDG  KA  + 
Sbjct: 136 TAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLP 195

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
            A   +  M  K   PD + +  LI    ++  +D A  +L  M  +  P +P  +T G+
Sbjct: 196 DACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTK-GP-EPTAVTYGS 253

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           ++        ++ A+EV   + +   +    ++T  ++     G  E A  V  +MT +G
Sbjct: 254 IVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARG 313

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
             PD +  ++LID     G+V  A  +      +G +   ++Y +++   S   N + A 
Sbjct: 314 CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAG 373

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           E+ E M    + P     N+L+      +++ +   V   M + G+ PN +T+++L+   
Sbjct: 374 EILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGL 433

Query: 420 ERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQI 478
            +    +    L  +  E + V P LV +  +I    +                +GR   
Sbjct: 434 FKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGK----------------AGR--- 474

Query: 479 ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN---LGVSADAL 535
                S A + ++E I  G IP     + ++  L         ++LVE+   LGV+ D  
Sbjct: 475 ----VSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQ 530

Query: 536 KRSNLCS-LID 545
             S L + LID
Sbjct: 531 AYSALITGLID 541



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/447 (22%), Positives = 201/447 (44%), Gaps = 43/447 (9%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y T+I+  A   K+D  ++ F+ M++ G EP+V  +  LI G  KAGQ     G   + +
Sbjct: 10  YNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQ--PQVGHKLLNQ 67

Query: 190 S-KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           + K  +PD  ++ ++I    ++G +D  +       A       D I+   ++K  A++ 
Sbjct: 68  ALKRFRPDVFLYTSVIHGYCKAGDLDTGY-----FRAVTPKASLDVISYTTVIKGLADSK 122

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           ++D A E+++ +           YT  I+   + G  E     +++M+    +P     +
Sbjct: 123 RIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYT 182

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            +ID    A  +  A ++ ++   +G     I+Y++L+   S A    +A +L + M + 
Sbjct: 183 VVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTK 242

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
             +PT  T  +++   C  D + +  EV++ M+  G  P    ++ LL     K   E  
Sbjct: 243 GPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEA 302

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR-PQIENKWTSLAL 487
             +L++    G  P+++++  +I                 L F++GR P+  + + S   
Sbjct: 303 YQVLTEMTARGCAPDVILYTSLID----------------LLFSTGRVPEARHVFDS--- 343

Query: 488 MVYR----EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSL 543
           M+ +    +A+  GTI  ++  SK+     +    +I E + ++ GV  D    +   SL
Sbjct: 344 MIEKGCAPDALTYGTI--IQNFSKI---GNVEAAGEILELMAKS-GVGPDCFAYN---SL 394

Query: 544 IDGFGEYD--PRAFSLLEEAASFGIVP 568
           +DG+ + +   +AF + +   + GI P
Sbjct: 395 MDGYVKLERVDQAFGVYDRMVASGIKP 421



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 164/368 (44%), Gaps = 16/368 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PT+ ++N ++S  AS    + A++    + + G + D   +TTLI    K+G+     +
Sbjct: 4   EPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQP----Q 59

Query: 149 VFHEMVNAGIE---PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP--DRVVFNAL 203
           V H+++N  ++   P+V  Y ++I G  KAG +       G  R+   K   D + +  +
Sbjct: 60  VGHKLLNQALKRFRPDVFLYTSVIHGYCKAGDLDT-----GYFRAVTPKASLDVISYTTV 114

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I     S  +D A ++  E+  +     P+ +   A++     AG+++   + ++ +   
Sbjct: 115 IKGLADSKRIDEACELFEEL--KTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGS 172

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           +   T   YT+ I+   +      AC V++ M +KG +PD +  + LID    A K++ A
Sbjct: 173 SCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEA 232

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            ++L     +G     ++Y S++          +A E+   M+    +P +    +L++ 
Sbjct: 233 RKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSY 292

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
                +  +  +VL++M + G  P+ I Y+ L+        V     +     E G  P+
Sbjct: 293 YLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPD 352

Query: 444 LVMFKCII 451
            + +  II
Sbjct: 353 ALTYGTII 360



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 4/147 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+      L ++M  K  +    V +    +       + EAF  F+ + +    P
Sbjct: 433 LFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIP 492

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+  L+   A +     A +++  + + G+  D + Y+ LIT    S  VD  ++VF
Sbjct: 493 ECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVF 552

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQ 177
            EM+  G  PN  TY  L  G   AG+
Sbjct: 553 QEMMKRGCAPNEVTYKVLRRGFRAAGR 579


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 124/544 (22%), Positives = 213/544 (39%), Gaps = 101/544 (18%)

Query: 40  RISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVP----NPTLST 94
           R+ + + L +DM        D V Y+      CK+    +    F +L       P   +
Sbjct: 104 RVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVS 163

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F+ L+        +  A  V + +  AGLKAD  +  TLI    + G +     + H M 
Sbjct: 164 FDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMT 223

Query: 155 NAGIEPNVHTYGALI---------------------DGCA--------------KAGQVA 179
                 +  TYG L+                     DGCA              + G++A
Sbjct: 224 AHACARDAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLA 283

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
           +A   +    +K   PD   +N LI  C +S  ++ A  +  E  AE   V  D  T   
Sbjct: 284 EATQLFESTMTKESVPDVFTYNLLIALC-KSKQLEEALTLFQE--AEQGGVVLDVFTYSY 340

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           LM A   AG+  +A EV+  + K        VY + I+C  + G  + A  + +DM +KG
Sbjct: 341 LMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKG 400

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           ++PD    + +ID     G+ E A+      K +  S  +++Y++L+      +   +A 
Sbjct: 401 IMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEAC 460

Query: 360 ELYEHMKSIKLKPTVSTM-----------------------------------NALITAL 384
           +L++ M++ K  P ++T                                    NALI+  
Sbjct: 461 DLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGF 520

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   Q+ K  E+  DM      P++ITY+IL++   R+    + + LL +   +G  P L
Sbjct: 521 CRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPAL 580

Query: 445 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
             +  +I          R+L        S   Q+E+ +T     +++E I  G  P ++ 
Sbjct: 581 ATYNVLI----------RSL--------SMAGQVEDAYT-----LFKEMIAKGFNPDMQT 617

Query: 505 VSKV 508
            S +
Sbjct: 618 YSAL 621



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 12/240 (5%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    +QG++ E ++LLEDM RKG++   + Y+    +V  S    ++A+ FF ++
Sbjct: 373 YNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNI-VIDVLSSCGRYEKAYSFFGMM 431

Query: 88  P----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                +P + T+N L++     + ++ A  +   +Q      D   + TLI T AK+G++
Sbjct: 432 KRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRM 491

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +   E    +V  G  PN + Y ALI G  ++GQV K +  +  M   +  PD + +  L
Sbjct: 492 EDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTIL 551

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHK 262
           +    + G    A ++L EM  E H   P   T   L+++ + AGQV+ A  ++K MI K
Sbjct: 552 VLGFSRRGHTSMAMELLQEMVREGHT--PALATYNVLIRSLSMAGQVEDAYTLFKEMIAK 609



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 84/434 (19%), Positives = 169/434 (38%), Gaps = 34/434 (7%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            +  ++ AG+  + HT  A++    K G+          +R K V    V     I A G
Sbjct: 5   TYKHLLKAGLPVDAHTATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFG 64

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G +D A  +L +M    +   PD +   A M       +V++A  ++  + +      
Sbjct: 65  RAGDLDAAMGMLDDMR-RGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRE-TCDCA 122

Query: 269 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFE 325
           P+V  Y   I    + GD + A  ++  + ++G   P+ V    L+ F     +   A  
Sbjct: 123 PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA 182

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + QE    G+   +   ++L+         ++A  L  HM +        T   L+ A C
Sbjct: 183 VFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHC 242

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              Q+ +    +   +  G   + + Y+ ++    R   +     L         +P++ 
Sbjct: 243 RAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVF 302

Query: 446 MFKCIIGMC-SRRYEKARTLNEH---------VLSFN--------SGRPQIENKWTSLAL 487
            +  +I +C S++ E+A TL +          V +++        +GR        + AL
Sbjct: 303 TYNLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGR-------AAKAL 355

Query: 488 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLI 544
            V+     AG +P   V + ++ CL      D    L+E++   G+  D    + +  ++
Sbjct: 356 EVFYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVL 415

Query: 545 DGFGEYDPRAFSLL 558
              G Y+ +A+S  
Sbjct: 416 SSCGRYE-KAYSFF 428



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 3/190 (1%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--- 73
           K   ++ DV       N L +  R  E  DL ++M+    +     +      + K+   
Sbjct: 432 KRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRM 491

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + A++++ R  K+   P    +N L+S    S   +  +++ + + E     D   YT L
Sbjct: 492 EDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTIL 551

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +   ++ G      E+  EMV  G  P + TY  LI   + AGQV  A+  +  M +K  
Sbjct: 552 VLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAKGF 611

Query: 194 KPDRVVFNAL 203
            PD   ++AL
Sbjct: 612 NPDMQTYSAL 621


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/486 (22%), Positives = 205/486 (42%), Gaps = 63/486 (12%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +    +SYN LI      G + E +DL  DME  GL + D V          +   + 
Sbjct: 310 HGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGL-EPDMV----------TYNILA 358

Query: 79  EAFRFFKLV--------------PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           + FR   L+              PNP L T+ +L+       + E A ++ + +   G +
Sbjct: 359 KGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQ 418

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
                 T L+ +  KS +VD  F++F EM   G+ P++ TY  LI G  K G+V +A   
Sbjct: 419 LSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILL 478

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEV-------------- 227
           Y  M S  + P+ ++  A++    + G + +A   FD L   N  +              
Sbjct: 479 YEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIK 538

Query: 228 ----------------HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
                             + P  +T  +LM       ++ +AR +   I  + ++     
Sbjct: 539 RGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVT 598

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           YT  +N   + G+ +    +  +M  K + P  +  + +I       K++ + ++L++  
Sbjct: 599 YTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMD 658

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G++   +SY++++ A   A++ +KA +LY+ M    L+PT  T N LI   C    L 
Sbjct: 659 AVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLK 718

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
               +L  +++  +  N   Y+ ++ A   K DV+  ++   Q  E G   ++  +  +I
Sbjct: 719 DADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVI 778

Query: 452 G-MCSR 456
           G +C R
Sbjct: 779 GRLCKR 784



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 160/347 (46%), Gaps = 22/347 (6%)

Query: 130 YTTLITT---CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
           YT+ I     C +S   DA+   F +      +P+V ++  ++    K G V  A   + 
Sbjct: 247 YTSSIVVDGLCRQSRFQDAVL-FFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFC 305

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           +M    + PD   +N LI     +G++  A D+  +M  E H ++PD +T   L K    
Sbjct: 306 MMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDM--ENHGLEPDMVTYNILAKGFRL 363

Query: 247 AGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCS--QTGDWEFACSVYDDMTKKG---- 299
            G ++ A   + +I K  IKG  P + T  +  C   Q G+ E A  +Y +M   G    
Sbjct: 364 LGLINGA---WNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLS 420

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           +I   V L +L      + +V+ AF++  E +  G+   +I+YS+L+         Q+A+
Sbjct: 421 IISSTVLLGSLCK----SRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAI 476

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            LYE M S ++ P      A++  LC+  ++ +       + +  L  + I Y+I++   
Sbjct: 477 LLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGY 536

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
            ++ +    + L  Q  E G+ P +V F  ++ G C +R+  +AR L
Sbjct: 537 IKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRL 583



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/378 (21%), Positives = 167/378 (44%), Gaps = 44/378 (11%)

Query: 99  MSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           M  CA S+ +    A  VL  +++       + Y +L+     S   + M++V++E+  +
Sbjct: 184 MLACAYSRSAMVHDALFVLVKMKDLNFIVSIQTYNSLLYNLRHS---NIMWDVYNEIKVS 240

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G   + +T   ++DG  +  +   A   +     K  +P  V FN +++           
Sbjct: 241 GTPQSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMS----------- 289

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
                                    + C   G VD A+  + M+ K+ +      Y I I
Sbjct: 290 -------------------------RYC-KLGFVDVAKSFFCMMLKHGLLPDAYSYNILI 323

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
           +     G    A  + +DM   G+ PD V  + L       G +  A+ I+Q+   +G +
Sbjct: 324 HGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPN 383

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             +++Y+ L+       N ++AL+LY+ M S   + ++ +   L+ +LC   Q+    ++
Sbjct: 384 PNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKL 443

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCS 455
             +M++ GL P+ ITYS L+    ++ +V+  ++L  +   + +IPN L+    ++G+C 
Sbjct: 444 FCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCE 503

Query: 456 R-RYEKARTLNEHVLSFN 472
           + +  +AR   +++++ N
Sbjct: 504 KGKISQARMYFDYLITSN 521



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/411 (19%), Positives = 175/411 (42%), Gaps = 11/411 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVP 88
           L +  ++     L  +ME  GL      Y      +CK Q  +++A   +      +++P
Sbjct: 431 LCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCK-QGEVQQAILLYEKMCSNRIIP 489

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N +L    +LM +C   K S+       L+  + L  D  LY  +I    K G      +
Sbjct: 490 N-SLIHGAILMGLCEKGKISQARMYFDYLIT-SNLSLDIILYNIMIDGYIKRGNTREAVK 547

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ ++   GI P + T+ +L+ G     ++++A      ++   ++P+ V +  L+    
Sbjct: 548 LYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYC 607

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +    ++L+EM A+   + P HIT   ++K      ++  + ++ + +    +   
Sbjct: 608 EEGNMQSLLELLSEMKAKA--IGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPD 665

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I    +  D   A  +YD M    + P  V  + LI+     G ++ A  +L 
Sbjct: 666 QVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLV 725

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             +N+ +++   +Y++++ A     +  KA+  +  M     + ++   +A+I  LC   
Sbjct: 726 SLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCKRC 785

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
            + +       M S G+CP+   + +LL A  +   +     LL++  + G
Sbjct: 786 LVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLNSEFELLAEMIKSG 836


>gi|330804373|ref|XP_003290170.1| hypothetical protein DICPUDRAFT_154652 [Dictyostelium purpureum]
 gi|325079727|gb|EGC33314.1| hypothetical protein DICPUDRAFT_154652 [Dictyostelium purpureum]
          Length = 590

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 214/462 (46%), Gaps = 55/462 (11%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G +   +  +E +++K L  +D V ++   +   + K I  +   FK + N    P    
Sbjct: 154 GHLHNVLQTIEYLDQK-LPSLDVVTYSTILSALANCKDIDNSLLIFKRLLNEGIFPNNHI 212

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           FN L+ V   +   + +  +L+ ++E+ G+K D   YT++I  C  + K D   ++F E 
Sbjct: 213 FNSLIRVHMDNGLVDESITILKSMEESYGIKPDHVNYTSIIHGCVNNKKYDMGLQIFSEA 272

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-- 211
            N G+EP+  T   LI+ CAK  +V KAF  Y      N+KP  V FN+LI+AC +    
Sbjct: 273 RNKGMEPDSVTLTVLINACAKNNRVEKAFAFYDEFSYLNLKPTEVTFNSLISACAKRSDD 332

Query: 212 -AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIH-KYNIKGT 268
               RAF++L EM  +V+   PD IT  +L+ A +  G++    +++ +++H + + K  
Sbjct: 333 YYYLRAFELLQEM--DVNGFKPDIITYTSLLNAASRRGEIPVVEKIFNELLHNREDFKQK 390

Query: 269 PE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+  V+   +          +A +  D+M      P +         AG    +E A ++
Sbjct: 391 PDERVFNSVL--------MAYANNQIDEMK----TPTK---------AGLKTNIEKANKV 429

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-IKLKPTVSTMNALITALC 385
             + + + ++V   S  SL+   +NA     A EL++   S  K+KP++S+   LIT L 
Sbjct: 430 FNQIEKRKLTVTHHSLDSLLRVYANANRLALAKELFDTKYSQYKVKPSISSYCILITMLM 489

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              +  + + +   MK+ G+ P+   Y  +L    +    +  L  + +  + G+ P L 
Sbjct: 490 KNKRFEEGLSIFEKMKNDGIEPDYKIYLEILHGTTKFGYAKTCLKFVKEMAQKGMPPILN 549

Query: 446 MFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 487
             K I+    +RYE                P++ N+  SLA+
Sbjct: 550 DIKGIL----KRYE--------------AYPEVTNEIKSLAV 573



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 285 WEFACSVYDDMTKKGVIPDEVFL----SALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           +EF  S  D       +P   FL      L+D  G  G +    + ++    +  S+ ++
Sbjct: 120 YEFNTSPIDPYEFFSKVP---FLLPAARQLLDRMGLCGHLHNVLQTIEYLDQKLPSLDVV 176

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +YS+++ A +N K+   +L +++ + +  + P     N+LI    D   + +++ +L  M
Sbjct: 177 TYSTILSALANCKDIDNSLLIFKRLLNEGIFPNNHIFNSLIRVHMDNGLVDESITILKSM 236

Query: 401 -KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--R 457
            +S G+ P+ + Y+ ++  C      ++GL + S+A+  G+ P+ V    +I  C++  R
Sbjct: 237 EESYGIKPDHVNYTSIIHGCVNNKKYDMGLQIFSEARNKGMEPDSVTLTVLINACAKNNR 296

Query: 458 YEKA 461
            EKA
Sbjct: 297 VEKA 300


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 164/357 (45%), Gaps = 6/357 (1%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +T  +L  +C   + ++        ++ A  + D   YTTLI    K G+VDA F++F +
Sbjct: 12  TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 71

Query: 153 MVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           MV AG   PN  TY AL+DG  K  ++  A       R ++  PD V +N L+ A  Q G
Sbjct: 72  MVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLG 131

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            VD A     +M  E +   P  ++  A++     A ++  A EV+  +   +       
Sbjct: 132 RVDEALATFTQMTEEGYV--PTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVT 189

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y++ I+   ++   + A  + D M  +G  PD V  + L+     AG++++A  +L+   
Sbjct: 190 YSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMV 249

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +QG    +++Y+ ++           A E++  + + K  P V T +ALI   C   ++ 
Sbjct: 250 SQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVD 309

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  +V   M+ +   PN +TY+ ++      D  E    +  +  E G +P+   ++
Sbjct: 310 EGGKV---MREMACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGFVPDARTYR 363



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/296 (22%), Positives = 123/296 (41%), Gaps = 37/296 (12%)

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           G++ N  T   ++ G  + G+VA+A   +   +   + +PD V +  LI    + G VD 
Sbjct: 5   GMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDA 64

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           AFD+  +M A      P+  T  AL+       ++D AR                     
Sbjct: 65  AFDLFRKMVA-AGGCRPNAFTYNALVDGLCKQDRLDAAR--------------------- 102

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
                         +V  +  K+   PD V  + L+      G+V+ A     +   +G 
Sbjct: 103 --------------AVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGY 148

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              ++S+++++     A+    ALE++  M      P + T + +I  LC  DQL +  +
Sbjct: 149 VPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQ 208

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +L  M S G  P+ + Y+ L++       ++  L LL +    G IP++V +  +I
Sbjct: 209 LLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVI 264



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 149/384 (38%), Gaps = 52/384 (13%)

Query: 19  ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQK-- 75
           A+   DV       N L + GR+    DL   M   G    +   Y+A    +CK  +  
Sbjct: 40  AHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLD 99

Query: 76  ----AIKEAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
                I EA  R F     P + T+N LM+        + A      + E G       +
Sbjct: 100 AARAVIAEARKRDFA----PDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSF 155

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             +IT   ++ ++    EVF+EM++    PN+ TY  +IDG  K+ Q+ +A      M S
Sbjct: 156 NAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVS 215

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           +  +PD V +  L+     +G +D A  +L  M ++     PD +T   ++      G+V
Sbjct: 216 EGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQ--GCIPDVVTYTVVIDKLCKVGRV 273

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D A E+++               +  N CS                     P+ V  SAL
Sbjct: 274 DDAHEIFR--------------ELVANKCS---------------------PNVVTYSAL 298

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I     A +V+   ++++E         +++Y++++   S     ++A  ++  M     
Sbjct: 299 IGGYCRASRVDEGGKVMRE---MACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGF 355

Query: 371 KPTVSTMNALITALCDGDQLPKTM 394
            P   T   L  AL   D  P  +
Sbjct: 356 VPDARTYRGLKRALRMIDHPPHVL 379


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/476 (23%), Positives = 192/476 (40%), Gaps = 53/476 (11%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           P P G       DV       + L R GR    ++L  ++ R+G+               
Sbjct: 165 PLPPGSRL----DVRAYTTVLHALSRAGRYERALELFAELRRQGVA-------------- 206

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS-SKDSEGAFQVLRLVQEAGLKADCKLY 130
                             PTL T+N+++ V     +       +L  ++ AG++ D    
Sbjct: 207 ------------------PTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTA 248

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           +T+I  C + G VD     F ++   G  P V TY AL+    KAG   +A    G M  
Sbjct: 249 STVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQ 308

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
              +PD V +N L     ++G  + A   L  M ++   + P+  T   +M A  N G+V
Sbjct: 309 NGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASK--GLLPNAFTYNTVMTAYGNVGKV 366

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D A  ++  + K         Y + +    +   +     +  +M++ G  P+ V  + +
Sbjct: 367 DEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTM 426

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           +   G  G  +    +L+  ++ G+ +   +Y++L+ A     +   A ++Y  M S   
Sbjct: 427 LAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGF 486

Query: 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            P ++T NAL+  L           ++S M++ G  PN  +YS+LL  C  K     G+ 
Sbjct: 487 TPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLL-QCYAKGGNVAGIA 545

Query: 431 LLSQA--KEDGVIPNLVM--------FKC--IIGMCSRRYE-KARTLNEHVLSFNS 473
            +         V P+ V+        FKC  + GM +   E KAR  N  ++ FNS
Sbjct: 546 AIENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNS 601



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 103/479 (21%), Positives = 190/479 (39%), Gaps = 50/479 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    + G  +E + +L +ME+ G    D V +             +EA R    
Sbjct: 282 TYNALLQVFGKAGNYTEALRVLGEMEQNGC-QPDAVTYNELAGTYARAGFFEEAARCLDT 340

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P   T+N +M+   +    + A  +   +++ G   +   Y  ++    K  +
Sbjct: 341 MASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSR 400

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
              M E+  EM  +G  PN  T+  ++  C K G           MRS  V+  R  +N 
Sbjct: 401 FTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNT 460

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI A G+ G+   AF +  EM +      P   T  AL+   +  G    A+ +   +  
Sbjct: 461 LIAAYGRCGSRTNAFKMYNEMTSA--GFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRT 518

Query: 263 YNIKGTPEVYTIAINCCSQTGD--------------------W---------EFACSVYD 293
              K   + Y++ + C ++ G+                    W          F C   D
Sbjct: 519 KGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKCRRLD 578

Query: 294 DMTK-------KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            M         +G  PD V  ++++      G    A E+    K  G+S  +I+Y+SLM
Sbjct: 579 GMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLM 638

Query: 347 GACSNAKNWQKALELYEHMK-SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
              +      +A ++   +K S  +KP V + N +I   C    + +   VLS+M + G+
Sbjct: 639 DMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGM 698

Query: 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKAR 462
            P  +TY  L+      +       ++    + G+ P  + ++ ++   C ++R+E+AR
Sbjct: 699 APCAVTYHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEEAR 757



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/406 (20%), Positives = 175/406 (43%), Gaps = 11/406 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTF 95
           G++ E + L + M++ G +     Y+     + K  +    ++      +    P   T+
Sbjct: 364 GKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTW 423

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N +++VC      +   +VL  ++  G++     Y TLI    + G     F++++EM +
Sbjct: 424 NTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTS 483

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           AG  P + TY AL++  ++ G  + A      MR+K  KP+   ++ L+    + G V  
Sbjct: 484 AGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAG 543

Query: 216 AFDVLAEMNAEVH---PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
               +A +  EV+    V P  + +  L+ A     ++D     ++ +          ++
Sbjct: 544 ----IAAIENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIF 599

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK- 331
              ++  ++ G +  A  V+D + + G+ PD +  ++L+D      +   A +IL + K 
Sbjct: 600 NSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKC 659

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +Q +   ++SY++++         ++A  +   M +  + P   T + L+      +   
Sbjct: 660 SQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFS 719

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           +  EV+  M   GL P  +TY  ++ +  R    E     LS+  E
Sbjct: 720 EAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVSE 765


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 173/381 (45%), Gaps = 28/381 (7%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ------- 119
           F N     + +K+  +  +  P    + +N+  S+     D+  A Q+L+ +Q       
Sbjct: 314 FTNSGHVVEVVKDILKQLRWGPATEKTLYNLNFSI-----DAYQANQILKQLQDHSVAVG 368

Query: 120 -------EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
                  + G   D   YTT++    ++ +  A+ ++  +MV  G +PNV TY  LI   
Sbjct: 369 FFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSY 428

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
            +A  + +A   +  M+    +PDRV +  LI    ++G +D A  +   M  EV  + P
Sbjct: 429 GRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQ-EVG-LSP 486

Query: 233 DHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFAC 289
           D  T   ++     +G +  A  ++ +M+ +  +   P +  Y I I   ++  +++ A 
Sbjct: 487 DTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCV---PNIVTYNILIALQAKARNYQTAL 543

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            +Y DM   G  PD+V  S +++  GH G +E A  +  E +          Y  L+   
Sbjct: 544 ELYRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLW 603

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
             A N +KA E Y  M    L P V T N+L++A     +LP    +L +M +LGL P+ 
Sbjct: 604 GKAGNVEKAWEWYHTMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSL 663

Query: 410 ITYSILLVAC-ERKDDVEVGL 429
            TY++LL  C E +   ++G 
Sbjct: 664 QTYTLLLSCCTEAQSPYDMGF 684



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 138/333 (41%), Gaps = 46/333 (13%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+Y  ++    R         LLE M + G    + V + R  +       ++EA   F 
Sbjct: 384 HTYTTMVGILGRAREFGAINKLLEQMVKDGC-QPNVVTYNRLIHSYGRANYLREALNVFN 442

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P   T+  L+ + A +   + A  +   +QE GL  D   Y+ +I    KSG
Sbjct: 443 QMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSG 502

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            + A   +F EMV+ G  PN+ TY  LI   AKA     A   Y  M++   KPD+V ++
Sbjct: 503 NLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYS 562

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            ++   G  G ++ A  V  EM  + H V PD    G L+     AG V++A        
Sbjct: 563 IVMEVLGHCGYLEEAEAVFFEMR-QNHWV-PDEPVYGLLVDLWGKAGNVEKA-------- 612

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                                  WE+    Y  M + G++P+    ++L+       ++ 
Sbjct: 613 -----------------------WEW----YHTMLRAGLLPNVPTCNSLLSAFLRVHRLP 645

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
            A+ +LQ     G++  + +Y+ L+  C+ A++
Sbjct: 646 DAYNLLQNMVTLGLNPSLQTYTLLLSCCTEAQS 678


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 163/337 (48%), Gaps = 10/337 (2%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           GL      +  L+    KS   +  + VF+E     ++ +V+++G +I GC + G + K 
Sbjct: 112 GLVPGSNTFNNLLILLIKSNFFEKAWRVFNE-TKGNVKLDVYSFGIMIKGCCEVGYLDKG 170

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
           F   G M    + P+ VV+  LI  C ++G ++R   +  +M  E+  V  +  T   L+
Sbjct: 171 FEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKM-GELDVV-ANQYTYTVLI 228

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYT---IAINCCSQTGDWEFACSVYDDMTKK 298
                 G      E+Y+ +    I   P VYT   +   CC+  G    A  ++D+M ++
Sbjct: 229 NGFFKMGLKKDGIELYEKMKLTGI--VPNVYTYNSMICRCCND-GKLNNAFELFDEMRER 285

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV  + V  + LI       +V  A  ++   K  G+S  +ISY++L+    +  N  KA
Sbjct: 286 GVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKA 345

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
             L+  MKS    P+++T N LI    +        +++ +M++ GL P+ +TY+IL+ A
Sbjct: 346 SSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDA 405

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
             R D++E    + S  ++ G++ ++ ++  +I G+C
Sbjct: 406 LVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLC 442



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 161/358 (44%), Gaps = 2/358 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +F +++  C      +  F+VL  ++E GL  +  +YTTLI  C K+G ++   ++F++M
Sbjct: 153 SFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKM 212

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               +  N +TY  LI+G  K G        Y  M+   + P+   +N++I  C   G +
Sbjct: 213 GELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKL 272

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + AF++  EM      V  + +T   L+       +V  A  +   + +  +      Y 
Sbjct: 273 NNAFELFDEMRER--GVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYN 330

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+     G+ + A S+++ M   G  P     + LI     A       ++++E + +
Sbjct: 331 TLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEAR 390

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+S   ++Y+ LM A   + N +KA ++Y  M+   L   +     LI  LC    + + 
Sbjct: 391 GLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEA 450

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            ++   +  + L PN + Y+ ++    ++      L LL +  E+G++PN+  +   I
Sbjct: 451 SKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 508



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 162/365 (44%), Gaps = 8/365 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P +  +  L+  C  + D E   Q+   + E  + A+   YT LI    K G      E
Sbjct: 183 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 242

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ +M   GI PNV+TY ++I  C   G++  AF  +  MR + V  + V +N LI    
Sbjct: 243 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 302

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           Q   V  A  ++  M  +   + P+ I+   L+    + G +D+A  ++  +       +
Sbjct: 303 QERRVLEAERLMCRMKRD--GLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPS 360

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I I   S+  +      +  +M  +G+ P +V  + L+D    +  +E AF+I  
Sbjct: 361 LATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYS 420

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             +  G+   I  Y  L+       + ++A +L++ +  + LKP     N +I   C   
Sbjct: 421 SMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEG 480

Query: 389 QLPKTMEVLSDMKSLGLCPNTITY-SILLVAC--ERKDDVEVGLMLLSQAKEDGVIPNLV 445
              + + +L +M   G+ PN  +Y S + + C  E+  + EV   LL    E G+ P++ 
Sbjct: 481 SSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEV---LLKDMIELGLKPSIS 537

Query: 446 MFKCI 450
           ++  I
Sbjct: 538 IWNMI 542



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 142/322 (44%), Gaps = 6/322 (1%)

Query: 67  FFNVCKSQKAIK--EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           FF +   +  I+  E  +   +VPN  + T+N ++  C +      AF++   ++E G+ 
Sbjct: 231 FFKMGLKKDGIELYEKMKLTGIVPN--VYTYNSMICRCCNDGKLNNAFELFDEMRERGVA 288

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
            +   Y TLI    +  +V     +   M   G+ PN+ +Y  LIDG    G + KA   
Sbjct: 289 CNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSL 348

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
           +  M+S    P    +N LI    ++       D++ EM  E   + P  +T   LM A 
Sbjct: 349 FNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREM--EARGLSPSKVTYTILMDAL 406

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
             +  +++A ++Y  + K  +     +Y + I+     GD + A  ++  + +  + P++
Sbjct: 407 VRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPND 466

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V  + +I      G    A  +L+E    G+   + SY+S +      + W +A  L + 
Sbjct: 467 VIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKD 526

Query: 365 MKSIKLKPTVSTMNALITALCD 386
           M  + LKP++S  N +  A  D
Sbjct: 527 MIELGLKPSISIWNMISKARFD 548



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 137/306 (44%), Gaps = 6/306 (1%)

Query: 149 VFHEMVNAGIEP---NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
           +FHE+    ++    +V  + A+I+   ++    +A      M  + + P    FN L+ 
Sbjct: 66  LFHELTQPHLDSFPTHVLIHEAIINAHVRSQLPEQALFYXNQMIGRGLVPGSNTFNNLLI 125

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              +S   ++A+ V  E    V     D  + G ++K C   G +D+  EV   + +  +
Sbjct: 126 LLIKSNFFEKAWRVFNETKGNV---KLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGL 182

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                VYT  I+ C + GD E    ++  M +  V+ ++   + LI+     G  +   E
Sbjct: 183 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 242

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + ++ K  GI   + +Y+S++  C N      A EL++ M+   +   V T N LI  LC
Sbjct: 243 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 302

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              ++ +   ++  MK  GL PN I+Y+ L+       +++    L +Q K  G  P+L 
Sbjct: 303 QERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLA 362

Query: 446 MFKCII 451
            +  +I
Sbjct: 363 TYNILI 368



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 9/221 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    ++ R+ E   L+  M+R GL      Y+      C      K +  F ++
Sbjct: 293 TYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQM 352

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             +   P+L+T+N+L++  + +K+S G   ++R ++  GL      YT L+    +S  +
Sbjct: 353 KSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNI 412

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +  F+++  M  AG+  +++ YG LI G    G + +A   +  +   ++KP+ V++N +
Sbjct: 413 EKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTM 472

Query: 204 ITACGQSGAVDRAFDVLAEM--NAEVHPVDPDHITIGALMK 242
           I    + G+  RA  +L EM  N  V  V   + TI  L K
Sbjct: 473 IYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCK 513


>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
          Length = 748

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 173/367 (47%), Gaps = 4/367 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ T+N+L+         E A  V   +   GL  D   Y TLI   +K G+VD  +E+
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F++M+   + P+V TY +LIDG  K  ++ K+      M    ++P+   +N+LI     
Sbjct: 180 FYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYST 239

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G    +  V  EM++    + P  +   + + A     ++  A++++  +     K   
Sbjct: 240 AGMWKESVRVFKEMSSS--GLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNI 297

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  ++  +  G +    S+ + M  KG++P+  F + LI+     G ++ A  I ++
Sbjct: 298 ISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFED 357

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            +N+G+    +++++++ +         AL  + HM  I + P+ +    LI   C+  +
Sbjct: 358 MQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGE 417

Query: 390 LPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           L K  E++S+M +  + P  + Y S ++    ++  V  G  ++    + G  PN+V F 
Sbjct: 418 LVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFN 477

Query: 449 CII-GMC 454
            ++ G C
Sbjct: 478 SLMEGYC 484



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 193/437 (44%), Gaps = 10/437 (2%)

Query: 35  LIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVC-KSQKAIKEAFRFFKLVPN 89
           L R  RI E  D+ + M  KG    ++    + H      C  +  ++        +VPN
Sbjct: 272 LCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPN 331

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
                FN+L++  A     + A  +   +Q  G+  D   + T+I++  + G++D     
Sbjct: 332 HRF--FNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 389

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV-VFNALITACG 208
           F+ MV+ G+ P+   Y  LI GC   G++ KA      M +K++ P  V  F+++I    
Sbjct: 390 FNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLF 449

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V    D++  M        P+ +T  +LM+     G ++ A  +   +    I+  
Sbjct: 450 KEGRVAEGKDIMDLMVQTGQ--RPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPN 507

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             +Y   ++   + G  + A +V+ DM  KGV P  V  + ++     A +  AA ++  
Sbjct: 508 CYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFH 567

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E    G +V I +Y  ++G         +A  L E + ++ +K  + T N +I+A+    
Sbjct: 568 EMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVG 627

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +  +  E+ + + + GL P   TY++++    +++  E    L    ++ G  P+  +  
Sbjct: 628 RRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLN 687

Query: 449 CIIGMCSRRYEKARTLN 465
            I+ M  ++ E A+  N
Sbjct: 688 HIVRMLLKKAEVAKASN 704



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 108/491 (21%), Positives = 203/491 (41%), Gaps = 51/491 (10%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +++YN LI    R  R    + +   + R GL      Y+       K  +  K    F+
Sbjct: 122 IYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFY 181

Query: 85  KLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           K++    +P + T+N L+     +K+   + +VL  + +AG++ + K Y +LI   + +G
Sbjct: 182 KMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAG 241

Query: 142 KVDAMFEVFHEMVNAGI-----------------------------------EPNVHTYG 166
                  VF EM ++G+                                   +PN+ +Y 
Sbjct: 242 MWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYS 301

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
            L+ G A  G  A       +M SK + P+   FN LI A  + G +D+A  +  +M  +
Sbjct: 302 TLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNK 361

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGD 284
              + PD +T   ++ +    G++D A  ++K  H  +I   P   VY   I  C   G+
Sbjct: 362 --GMIPDTVTFATVISSLCRIGRLDDA--LHKFNHMVDIGVPPSEAVYRCLIQGCCNHGE 417

Query: 285 WEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
              A  +  +M  K + P  V + S++I+     G+V    +I+      G    +++++
Sbjct: 418 LVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDIMDLMVQTGQRPNVVTFN 477

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           SLM       N ++A  L + M SI ++P       L+   C   ++   + V  DM   
Sbjct: 478 SLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHK 537

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKA 461
           G+ P ++ Y+I+L    +         +  +  E G   ++  +  ++G   R    ++A
Sbjct: 538 GVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEA 597

Query: 462 RTLNEHVLSFN 472
             L E + + N
Sbjct: 598 NMLLEKLFAMN 608



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 186/417 (44%), Gaps = 38/417 (9%)

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
           P ++TY  LID   +  +   A   +G +    + PD   +N LI    + G VD+A+++
Sbjct: 120 PTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYEL 179

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
             +M  +   V PD +T  +L+       ++ ++  V + +    I+   + Y   I   
Sbjct: 180 FYKMIEQ--SVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGY 237

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
           S  G W+ +  V+ +M+  G+IP  V  ++ I       +++ A +I      +G    I
Sbjct: 238 STAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNI 297

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ISYS+L+   +    +     L   M S  + P     N LI A      + K M +  D
Sbjct: 298 ISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFED 357

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
           M++ G+ P+T+T++ ++ +  R   ++  L   +   + GV P+  +++C+I  C    E
Sbjct: 358 MQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGE 417

Query: 460 --KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517
             KA+ L   +++ +   P ++  ++S+   +++E  VA                     
Sbjct: 418 LVKAKELISEMMNKDIPPPGVK-YFSSIINNLFKEGRVAE-------------------G 457

Query: 518 ADIRERLVENLGVSADALKRSNLC---SLIDGF---GEYDPRAFSLLEEAASFGIVP 568
            DI + +V+         +R N+    SL++G+   G  +  AF+LL+  AS GI P
Sbjct: 458 KDIMDLMVQ-------TGQRPNVVTFNSLMEGYCLVGNME-EAFALLDAMASIGIEP 506



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/485 (19%), Positives = 208/485 (42%), Gaps = 32/485 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLL----DMDKVYHARFFNVCKSQKAIKEAFR 82
           +YN LI      G   E + + ++M   GL+    + +   HA    +C+  + IKEA  
Sbjct: 229 TYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHA----LCRHNR-IKEAKD 283

Query: 83  FFKLV----PNPTLSTFNMLMSVCASSKDSEGAF----QVLRLVQEAGLKADCKLYTTLI 134
            F  +    P P + +++ L+   A+    EG F     ++ L+   G+  + + +  LI
Sbjct: 284 IFDSMVLKGPKPNIISYSTLLHGYAA----EGCFANMNSLVNLMVSKGIVPNHRFFNILI 339

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
              A+ G +D    +F +M N G+ P+  T+  +I    + G++  A   +  M    V 
Sbjct: 340 NAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVP 399

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRA 253
           P   V+  LI  C   G + +A ++++EM N ++ P  P      +++      G+V   
Sbjct: 400 PSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPP--PGVKYFSSIINNLFKEGRVAEG 457

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
           +++  ++ +   +     +   +      G+ E A ++ D M   G+ P+      L+D 
Sbjct: 458 KDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDG 517

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
               G+++ A  + ++  ++G+    + Y+ ++     A+    A +++  M       +
Sbjct: 518 YCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVS 577

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + T   ++  LC  +   +   +L  + ++ +  + IT++I++ A  +    +    L +
Sbjct: 578 IQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFA 637

Query: 434 QAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR 491
                G++P +  +  +I   +    YE+A  L   +    SGR         +  M+ +
Sbjct: 638 AISTYGLVPTVHTYNLMISNLIKEESYEEADNL--FISVEKSGRAPDSRLLNHIVRMLLK 695

Query: 492 EAIVA 496
           +A VA
Sbjct: 696 KAEVA 700



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 35/188 (18%), Positives = 80/188 (42%), Gaps = 3/188 (1%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LS 93
           + GRI + + +  DM  KG+     +Y+     + ++++       F +++ + T   + 
Sbjct: 520 KNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQ 579

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+ +++     +  ++ A  +L  +    +K D   +  +I+   K G+     E+F  +
Sbjct: 580 TYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFNIVISAMLKVGRRQEAKELFAAI 639

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G+ P VHTY  +I    K     +A   +  +      PD  + N ++    +   V
Sbjct: 640 STYGLVPTVHTYNLMISNLIKEESYEEADNLFISVEKSGRAPDSRLLNHIVRMLLKKAEV 699

Query: 214 DRAFDVLA 221
            +A + L+
Sbjct: 700 AKASNYLS 707


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 179/382 (46%), Gaps = 9/382 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + ++  +++      DS  A+     + +  +  D   Y+++I    K   +D   EV
Sbjct: 194 PDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV-----VFNALI 204
              MV  G+ PN  TY +++ G   +GQ  +A G    +RS  V+PD +      +  L+
Sbjct: 254 LTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLL 313

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                 GA+     +L  M    + + PDH     L+ A A  G+VD A  V+  + +  
Sbjct: 314 QGYATKGALVGMHALLDLMVR--NGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQG 371

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +      Y   I    ++G  E A   ++ M  +G+ P  +  ++LI       K E A 
Sbjct: 372 LNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAE 431

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E++ E  ++GI +  I ++S++ +        ++ +L++ M  I +KP + T + LI   
Sbjct: 432 ELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 491

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++ + M++LS M S+GL PNT+TY  L+    +   +   L+L  + +  GV P++
Sbjct: 492 CLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDI 551

Query: 445 VMFKCII-GMC-SRRYEKARTL 464
           + +  I+ G+  +RR   A+ L
Sbjct: 552 ITYNIILQGLFQTRRTAAAKEL 573



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/417 (22%), Positives = 183/417 (43%), Gaps = 12/417 (2%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---------PT 91
           + + +++L  M + G++   + Y +     C S +  KEA  F K V +         P 
Sbjct: 247 MDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQP-KEAIGFLKKVRSDGVEPDGLEPD 305

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++T+  L+   A+     G   +L L+   G+  D  +Y  LI   AK GKVD    VF 
Sbjct: 306 IATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFS 365

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M   G+ P+  TYGA+I    K+G+V  A   +  M  + + P  +V+N+LI       
Sbjct: 366 KMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCN 425

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             +RA +++ EM      +  + I   +++ +    G+V  + +++ ++ +  +K     
Sbjct: 426 KWERAEELILEMLD--RGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIIT 483

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y+  I+     G  + A  +   M   G+ P+ V    LI+      ++  A  + +E +
Sbjct: 484 YSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEME 543

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           + G+S  II+Y+ ++      +    A ELY  +     +  +ST N ++  LC      
Sbjct: 544 SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTD 603

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
             + +  ++  + L     T++I++ A  +         L      +G++PN   ++
Sbjct: 604 DALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYR 660



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 176/418 (42%), Gaps = 12/418 (2%)

Query: 9   LQFPY--PNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR 66
           L+ P+   +G+    A DV       N   ++G   +      +M  + +      Y + 
Sbjct: 178 LELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSI 237

Query: 67  FFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLM-SVCASSKDSE--GAFQVLRL--V 118
              +CK Q   K       +V N   P   T+  +M   C+S +  E  G  + +R   V
Sbjct: 238 IAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGV 297

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           +  GL+ D   Y TL+   A  G +  M  +   MV  GI P+ + Y  LI   AK G+V
Sbjct: 298 EPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKV 357

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            +A   +  MR + + PD V + A+I    +SG V+ A     +M  E   + P +I   
Sbjct: 358 DEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDE--GLSPGNIVYN 415

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           +L+       + +RA E+   +    I      +   I+   + G    +  ++D M + 
Sbjct: 416 SLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRI 475

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV PD +  S LID    AGK++ A ++L    + G+    ++Y +L+           A
Sbjct: 476 GVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDA 535

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           L L++ M+S  + P + T N ++  L    +     E+   +   G      TY+I+L
Sbjct: 536 LVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIIL 593



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 193/450 (42%), Gaps = 38/450 (8%)

Query: 150 FHEMVNAG---IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           ++ M  AG   + P VHTY  LI  C +A ++   F A G +  K  + + + F  L+  
Sbjct: 72  YNRMARAGAGKVTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKG 131

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                    A D++     E+  + PD  +   L+K   +  +   A E+  M+      
Sbjct: 132 LCADKRTSDAMDIVLRRMTELSCM-PDVFSCTILLKGLCDENRSQEALELPHMMADGRGG 190

Query: 267 GT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G+ P+V  YT  IN   + GD   A S Y +M  + + PD V  S++I        ++ A
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 324 FEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIK-----LKPTVSTM 377
            E+L      G+     +Y+S+M G CS+ +  ++A+   + ++S       L+P ++T 
Sbjct: 251 MEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQP-KEAIGFLKKVRSDGVEPDGLEPDIATY 309

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
             L+        L     +L  M   G+ P+   Y+IL+ A  ++  V+  +++ S+ ++
Sbjct: 310 CTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQ 369

Query: 438 DGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQIE-----------NKW-- 482
            G+ P+ V +  +IG+   S R E A    E ++        I            NKW  
Sbjct: 370 QGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 429

Query: 483 -TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLC 541
              L L +    I   TI    ++       ++  +  + + +V  +GV  D +  S   
Sbjct: 430 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYS--- 485

Query: 542 SLIDGF---GEYDPRAFSLLEEAASFGIVP 568
           +LIDG+   G+ D  A  LL    S G+ P
Sbjct: 486 TLIDGYCLAGKMD-EAMKLLSGMVSVGLKP 514


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 166/369 (44%), Gaps = 5/369 (1%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           FN+LM+      +   A +V   + +  L+     + TLI    K G +D  F + H+M 
Sbjct: 243 FNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME 302

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            +   P+V TY ALI+   K  ++  A G +  M  + + P+ V+F  LI    ++G +D
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEID 362

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
              +   +M ++   + PD +    L+      G +  AR +   + +  ++     YT 
Sbjct: 363 LMKESYQKMLSK--GLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTT 420

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   + GD E A  +  +M + G+  D V  SAL+      G+V  A   L+E    G
Sbjct: 421 LIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAG 480

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           I    ++Y+ +M A     + Q   +L + M+S    P+V T N L+  LC   Q+    
Sbjct: 481 IKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNAD 540

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
            +L  M ++G+ P+ ITY+ LL    R  +     +   Q  E G++ +L  +K I+   
Sbjct: 541 MLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYI---QKPEIGIVADLASYKSIVNEL 597

Query: 455 SRRYEKART 463
            R  +  R 
Sbjct: 598 DRASKDHRN 606



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 149/338 (44%), Gaps = 38/338 (11%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           + +AG   +  ++  L+    K G +    +VF E+    ++P V ++  LI+G  K G 
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGN 290

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           + + F     M     +PD   ++ALI A  +   +D A  +  EM      + P+ +  
Sbjct: 291 LDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKR--GLIPNDVIF 348

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
             L+   +  G++D  +E Y+ +    ++    +Y   +N   + GD   A ++ D M +
Sbjct: 349 TTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIR 408

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           +G+ PD++  + LID     G VE A EI +E    GI +  + +S              
Sbjct: 409 RGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFS-------------- 454

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
                                AL+  +C   ++      L +M   G+ P+ +TY++++ 
Sbjct: 455 ---------------------ALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMD 493

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           A  +K D + G  LL + + DG +P++V +  ++ G+C
Sbjct: 494 AFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLC 531



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 153/329 (46%), Gaps = 7/329 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N+  ++G IS+   + +++ ++ L      ++      CK    + E FR      K   
Sbjct: 248 NKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGN-LDEGFRLKHQMEKSRT 306

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T++ L++        +GA  +   + + GL  +  ++TTLI   +++G++D M E
Sbjct: 307 RPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKE 366

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            + +M++ G++P++  Y  L++G  K G +  A      M  + ++PD++ +  LI    
Sbjct: 367 SYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFC 426

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V+ A ++  EM+   + ++ D +   AL+      G+V  A    + + +  IK  
Sbjct: 427 RGGDVETALEIRKEMDQ--NGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPD 484

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT+ ++   + GD +    +  +M   G +P  V  + L++     G+++ A  +L 
Sbjct: 485 DVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLD 544

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQK 357
              N G+    I+Y++L+       N  K
Sbjct: 545 AMLNIGVVPDDITYNTLLEGHHRHANSSK 573



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%)

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  + G  + +  ++ LM       N   A ++++ +    L+PTV + N LI   C   
Sbjct: 230 EILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVG 289

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L +   +   M+     P+  TYS L+ A  +++ ++    L  +  + G+IPN V+F 
Sbjct: 290 NLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFT 349

Query: 449 CIIGMCSRRYE 459
            +I   SR  E
Sbjct: 350 TLIHGHSRNGE 360



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAI--KEAFR- 82
           +Y  LI    R G +   +++ ++M++ G+ ++D+V + A    +CK  + I  + A R 
Sbjct: 417 TYTTLIDGFCRGGDVETALEIRKEMDQNGI-ELDRVGFSALVCGMCKEGRVIDAERALRE 475

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             +    P   T+ M+M       D++  F++L+ +Q  G       Y  L+    K G+
Sbjct: 476 MLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQ 535

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
           +     +   M+N G+ P+  TY  L++G  +    +K +
Sbjct: 536 MKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRY 575


>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
 gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
          Length = 558

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 173/393 (44%), Gaps = 10/393 (2%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           R   +  S K     FR+ K+  N       + M++ + A     + A  +   +QE   
Sbjct: 125 REITISGSLKHAVHVFRWMKIQENYCARNDIYGMMIRLHARHNQVDQARGLFFEMQEWRC 184

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
           K D   Y +LI   A++G+      +  +M  A I P+  TY  +I+ C  AG   KA  
Sbjct: 185 KPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALE 244

Query: 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
               M    V PD +  N +++A        +A      M +    V PD  T+  ++  
Sbjct: 245 LCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSS--KVAPDTCTMNIVIHC 302

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
                    A E++  + +      P+V  YT  +   S  G  E   +V+D M  +GV 
Sbjct: 303 LVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVR 362

Query: 302 PDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
           P+ V  +AL+  +A H    E A E  +  K  G    I+SY+SL+ A   +   +KA E
Sbjct: 363 PNIVSYNALLGAYASHGMHTE-ALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKARE 421

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           ++  M+    KP   + NALI A      L + + +L +M+  G+ P+ I+ S LL AC 
Sbjct: 422 VFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACG 481

Query: 421 R-KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           R +   ++G+ +L+ AK  G+  N V +   IG
Sbjct: 482 RCRQPTKIGI-ILAAAKSRGIQLNTVAYNSGIG 513



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 186/392 (47%), Gaps = 23/392 (5%)

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           +++  S K +   F+ +++ +    + D  +Y  +I   A+  +VD    +F EM     
Sbjct: 127 ITISGSLKHAVHVFRWMKIQENYCARND--IYGMMIRLHARHNQVDQARGLFFEMQEWRC 184

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
           +P+  TY +LI   A+AGQ   A      M+   + P R  +N +I ACG +G   +A +
Sbjct: 185 KPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALE 244

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           +  +M    + V PD IT   ++ A  N  Q  +A   ++++    +        I I+C
Sbjct: 245 LCKKMTE--NGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHC 302

Query: 279 CSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALI---DFAGHAGKVEAAFEILQEAKNQ 333
             +   +  A  +++ M ++  I  PD V  ++++      G A   +A F+++     +
Sbjct: 303 LVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVA---E 359

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+   I+SY++L+GA ++     +ALE ++ +K    KP + +  +L+ A        K 
Sbjct: 360 GVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKA 419

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
            EV ++M+     PN ++Y+ L+ A      ++  + LL + ++DG+ P+++    ++  
Sbjct: 420 REVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTA 479

Query: 454 CSRRYE-----------KARTLNEHVLSFNSG 474
           C R  +           K+R +  + +++NSG
Sbjct: 480 CGRCRQPTKIGIILAAAKSRGIQLNTVAYNSG 511



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 157/366 (42%), Gaps = 1/366 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+N L+   A +     A  ++  +Q A +      Y  +I  C  +G      E+
Sbjct: 186 PDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALEL 245

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M   G+ P++ T+  ++       Q +KA   + IM+S  V PD    N +I    +
Sbjct: 246 CKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVK 305

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
                 A ++   M        PD +T  ++M + +  GQ +  + V+ M+    ++   
Sbjct: 306 VALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNI 365

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +   +  G    A   +  + + G  PD V  ++L++  G +   E A E+  E
Sbjct: 366 VSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNE 425

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            +        +SY++L+ A  +A   ++A+ L   M+   ++P V +++ L+TA     Q
Sbjct: 426 MRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCRQ 485

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             K   +L+  KS G+  NT+ Y+  + +     D +  L L +  +   V P+ V +  
Sbjct: 486 PTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNI 545

Query: 450 II-GMC 454
           +I G C
Sbjct: 546 LISGSC 551



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 123/258 (47%), Gaps = 3/258 (1%)

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           R  F  LI     SG++  A  V   M  + +    + I  G +++  A   QVD+AR +
Sbjct: 117 RRNFPLLIREITISGSLKHAVHVFRWMKIQENYCARNDI-YGMMIRLHARHNQVDQARGL 175

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  + ++  K   + Y   I+  ++ G W +A ++ DDM +  + P     + +I+  G 
Sbjct: 176 FFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGA 235

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           AG  + A E+ ++    G+   +I+++ ++ A  N   + KA+  +E MKS K+ P   T
Sbjct: 236 AGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCT 295

Query: 377 MNALITALCDGDQLPKTMEVLSDMKS-LGLC-PNTITYSILLVACERKDDVEVGLMLLSQ 434
           MN +I  L       + +E+ + M+    +C P+ +TY+ ++ +       E    +   
Sbjct: 296 MNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDM 355

Query: 435 AKEDGVIPNLVMFKCIIG 452
              +GV PN+V +  ++G
Sbjct: 356 MVAEGVRPNIVSYNALLG 373



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 112/254 (44%), Gaps = 7/254 (2%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARF---FNVCKSQKAIKEAFRFFKLVP-N 89
           L++     E I+L   M ER+ +   D V +      ++VC   +  K  F         
Sbjct: 303 LVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVR 362

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + ++N L+   AS      A +  +L+++ G K D   YT+L+    +S   +   EV
Sbjct: 363 PNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREV 422

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+EM     +PN  +Y ALID    AG + +A      M    ++PD +  + L+TACG+
Sbjct: 423 FNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGR 482

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
                +   +LA   A+   +  + +   + + +  + G   +A E+Y  +   N+K   
Sbjct: 483 CRQPTKIGIILAA--AKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDA 540

Query: 270 EVYTIAINCCSQTG 283
             Y I I+   + G
Sbjct: 541 VTYNILISGSCKLG 554



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 89/200 (44%), Gaps = 11/200 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V   + SYN L+      G  +E ++  + +++ G    D V +    N    + A+
Sbjct: 358 AEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGF-KPDIVSYTSLLNA-YGRSAL 415

Query: 78  KEAFR--FFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            E  R  F ++  N   P   ++N L+    S+   + A  +L  +++ G++ D    +T
Sbjct: 416 PEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISIST 475

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+T C +  +   +  +     + GI+ N   Y + I      G   KA   Y  MR+ N
Sbjct: 476 LLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGN 535

Query: 193 VKPDRVVFNALITACGQSGA 212
           VKPD V +N LI+   + G+
Sbjct: 536 VKPDAVTYNILISGSCKLGS 555


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 196/446 (43%), Gaps = 23/446 (5%)

Query: 41  ISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS--TFNM 97
           I     L+  +ER  L    + +Y      + +S+K     +  F L    TL+  T+N 
Sbjct: 205 IGTAYSLVTWLERHNLCFSYELLYSILIHALGRSEKL----YEAFLLSQRQTLTPLTYNA 260

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MFEVFHEMVN 155
           L+  CA + D E A  ++  ++  G  +D   Y+ +I +  ++ K D+  + +++ E+ +
Sbjct: 261 LIGACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIES 320

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
             IE +      +I G AK+G V +A     +++   + P      A+ITA G +G  + 
Sbjct: 321 DKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEE 380

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A  +  E+      + P      AL+K     G +  A  +   + +         Y++ 
Sbjct: 381 AEAIFEELKE--GGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLL 438

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+  +  G WE A  V  +M   GV P+    S ++      GK + +F++L+E +N G+
Sbjct: 439 IDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGV 498

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           S     Y+ ++           AL  ++ M+   ++P   T N LI   C      K  E
Sbjct: 499 SPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEE 558

Query: 396 VLSDMKSLGLCPNTITYSILLVAC---ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           +   M+  G  P T TY+I++ +    ER +DV+    LL + +  G++ N+V +   +G
Sbjct: 559 LFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKT---LLGKMQSQGLLANVVTY-TTLG 614

Query: 453 MCSR-----RYEKARTLNEHVLSFNS 473
           +  +     R  +A  L   VL  NS
Sbjct: 615 LSEQAINAFRVMRADGLKPSVLVLNS 640



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 145/350 (41%), Gaps = 36/350 (10%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
           A S D   A   L +VQ  GL         +IT    +G+ +    +F E+   G+ P  
Sbjct: 338 AKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRT 397

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
             Y AL+ G  K G +  A      M      PD   ++ LI A   +G  + A  VL E
Sbjct: 398 RAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKE 457

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  E   V P+      ++ +  + G+  ++ +V + +    +      Y + I+   + 
Sbjct: 458 M--EASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKC 515

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALID---FAGHAGKVEAAFEILQEAKNQGISVGI 339
              + A + +D M  +GV PD V  + LID    +GH  K E  FE +QE+   G S   
Sbjct: 516 NCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQES---GCSPCT 572

Query: 340 ISYSSLMGACSNAKNWQ----------------------------KALELYEHMKSIKLK 371
            +Y+ ++ +    + W+                            +A+  +  M++  LK
Sbjct: 573 TTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLK 632

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           P+V  +N+LI A  +  +  +   VL  MK   L P+ +TY+ L+ A  R
Sbjct: 633 PSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIR 682



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 140/329 (42%), Gaps = 9/329 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+     +   + A  ++  ++ +G   D   Y+ LI   A +G+ ++   V
Sbjct: 395 PRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIV 454

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM  +G+ PN + +  ++      G+  K+F     MR+  V PDR  +N +I   G+
Sbjct: 455 LKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGK 514

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
              +D A      M  E   V PD +T   L+     +G  ++A E+++ + +       
Sbjct: 515 CNCLDHALATFDRMRME--GVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCT 572

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I IN   +   WE   ++   M  +G++ + V  + L       G  E A    + 
Sbjct: 573 TTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTL-------GLSEQAINAFRV 625

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            +  G+   ++  +SL+ A    +   +A  + ++MK   LKP V T   L+ AL   ++
Sbjct: 626 MRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEK 685

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVA 418
             K   V  +M   G  P+    ++L  A
Sbjct: 686 FDKVPAVYEEMTLSGCTPDRKARAMLRSA 714



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 157/333 (47%), Gaps = 18/333 (5%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLST 94
           GR  E   + E+++  GL+   + Y+A      K+  ++K+A      +     +P   T
Sbjct: 376 GRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKT-GSLKDAESIVSEMERSGFSPDEHT 434

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +++L+   A++   E A  VL+ ++ +G++ +  +++ ++ +    GK    F+V  EM 
Sbjct: 435 YSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR 494

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           N+G+ P+ H Y  +ID   K   +  A   +  MR + V+PD V +N LI    +SG  +
Sbjct: 495 NSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHN 554

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           +A ++   M  +     P   T   ++ +    G+ +R  +V  ++ K   +G      +
Sbjct: 555 KAEELFEAM--QESGCSPCTTTYNIMINSF---GEQERWEDVKTLLGKMQSQG------L 603

Query: 275 AINCCSQT--GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
             N  + T  G  E A + +  M   G+ P  + L++LI+  G   +   AF +LQ  K 
Sbjct: 604 LANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKE 663

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             +   +++Y++LM A    + + K   +YE M
Sbjct: 664 NDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEM 696


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 180/396 (45%), Gaps = 45/396 (11%)

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           R F L+P P + TFN+++  +C   +  E     +R+ +  G   D   Y +LI    K 
Sbjct: 190 RLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRM-KAMGCSPDVVTYNSLIDGYGKC 248

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G ++ + ++  EM  +G   +V TY ALI+  +K G++ KA+  +G M+ + V  + V F
Sbjct: 249 GDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTF 308

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +  + A  + G V  A  + A+M   V  + P+  T  +L+     AG++D A       
Sbjct: 309 STFVDAFCKEGLVQEAMKLFAQM--RVRGMMPNEFTYTSLVDGTCKAGRLDDA------- 359

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
                                         + D+M  +G++P+ V  + ++D     GKV
Sbjct: 360 ----------------------------IVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKV 391

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A  +L   +  G+    + Y++L+       N ++AL+L   MK+  ++  VS    L
Sbjct: 392 AEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTL 451

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I  LC   ++ +   +L  M   GL PNT+ Y+ ++ A  +       + LL +  + G 
Sbjct: 452 IWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGF 511

Query: 441 IPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGR 475
            PN+V +  +I G+C     KA +++E +  FN  R
Sbjct: 512 QPNVVTYCALIDGLC-----KAGSISEAISHFNKMR 542



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/447 (21%), Positives = 191/447 (42%), Gaps = 48/447 (10%)

Query: 54  KGLLDMDKVYHARFFNV-----CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105
           + L D+  V +   FN+     CK  + ++    F ++     +P + T+N L+      
Sbjct: 189 RRLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKC 248

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
            D E   Q++  ++++G  AD   Y  LI   +K G+++  +  F EM   G+  NV T+
Sbjct: 249 GDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTF 308

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
              +D   K G V +A   +  MR + + P+   + +L+    ++G +D A  +L EM  
Sbjct: 309 STFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM-- 366

Query: 226 EVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
            VH  + P+ +T   ++      G+V  A  V  ++ +  +K    +YT  I+      +
Sbjct: 367 -VHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNN 425

Query: 285 WEFACSVYDDMTKKG-----------------------------------VIPDEVFLSA 309
            E A  + + M  KG                                   + P+ V  + 
Sbjct: 426 SERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTT 485

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           ++D    AGK   A  +L +  + G    +++Y +L+     A +  +A+  +  M+ + 
Sbjct: 486 IMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELG 545

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           L P V    ALI   C    L K M ++++M   G+  + + Y+ L+    ++ +++   
Sbjct: 546 LDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAF 605

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMCS 455
            L ++  E G+  +L  + C I G C+
Sbjct: 606 ALKTKMIESGLQLDLYCYTCFISGFCN 632



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 185/440 (42%), Gaps = 48/440 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G + E   L+ +M + G    D V +    N       +++A+ +F  
Sbjct: 237 TYNSLIDGYGKCGDLEEVEQLVSEMRKSGC-AADVVTYNALINCFSKFGRMEKAYSYFGE 295

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +        + TF+  +         + A ++   ++  G+  +   YT+L+    K+G+
Sbjct: 296 MKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR 355

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D    +  EMV+ G+ PNV TY  ++DG  K G+VA+A     +M    VK + +++  
Sbjct: 356 LDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTT 415

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVD------------------------------- 231
           LI     +   +RA D+L +M  +   +D                               
Sbjct: 416 LIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCG 475

Query: 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWE 286
             P+ +    +M A   AG   +  E   ++HK    G  P V  Y   I+   + G   
Sbjct: 476 LRPNTVIYTTIMDALFKAG---KESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSIS 532

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A S ++ M + G+ P+    +ALID     G +  A  ++ E  ++G+S+  + Y+SL+
Sbjct: 533 EAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLI 592

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                  N Q A  L   M    L+  +      I+  C+ + + +   VLS+M   G+ 
Sbjct: 593 DGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGIT 652

Query: 407 PNTITYSILLVACERKDDVE 426
           P+   Y+ L+   ++  ++E
Sbjct: 653 PDKTVYNCLIRKYQKLGNME 672



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 147/338 (43%), Gaps = 14/338 (4%)

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK---AGQVAKAFGAYGIM 188
           TL++  A  G +D        +    + PN  T   ++   A+    G V + F    + 
Sbjct: 139 TLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFDLLPV- 197

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
                 P+   FN +I    + G +  A  +   M A      PD +T  +L+      G
Sbjct: 198 ------PNVFTFNIVIDFLCKEGELVEARALFVRMKA--MGCSPDVVTYNSLIDGYGKCG 249

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            ++   ++   + K         Y   INC S+ G  E A S + +M ++GV+ + V  S
Sbjct: 250 DLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFS 309

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
             +D     G V+ A ++  + + +G+     +Y+SL+     A     A+ L + M   
Sbjct: 310 TFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQ 369

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            L P V T   ++  LC   ++ +   VLS M+  G+  N + Y+ L+      ++ E  
Sbjct: 370 GLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERA 429

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
           L LL+Q K  G+  ++ ++  +I G+C  ++ ++A++L
Sbjct: 430 LDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSL 467



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 141/303 (46%), Gaps = 9/303 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVY----HARFFNVCKSQKAIKEAFRFFKLVPNP 90
           L ++G+++E  ++L  MER G+   + +Y    H  F N   S++A+    +        
Sbjct: 385 LCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMN-NNSERALDLLNQMKNKGMEL 443

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            +S +  L+  +C   K  E A  +L  +   GL+ +  +YTT++    K+GK      +
Sbjct: 444 DVSLYGTLIWGLCKDQKVDE-AKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVAL 502

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            H+++++G +PNV TY ALIDG  KAG +++A   +  MR   + P+   + ALI    +
Sbjct: 503 LHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCK 562

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G++++A  ++ EM  +   +  D +   +L+        +  A  +   + +  ++   
Sbjct: 563 IGSLNKAMHLMNEMIDK--GMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDL 620

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  I+        + A  V  +M   G+ PD+   + LI      G +E A  +  E
Sbjct: 621 YCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNE 680

Query: 330 AKN 332
            ++
Sbjct: 681 MES 683



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 139/310 (44%), Gaps = 23/310 (7%)

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +   ++ AG  P  H   +L+D   +A   A A G       ++  P   V + L++  
Sbjct: 97  RLLSRLLGAGHRP--HLAASLVDLLHRA---ALALGP-----RRSALPS--VVDTLLSLL 144

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
              G +D A   LA +     P  P+  T   ++   A   Q    R ++ ++       
Sbjct: 145 ADHGLLDDAVRALARVRQLRVP--PNTRTCNHILLRLARNRQGGLVRRLFDLL------P 196

Query: 268 TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P V+T  I I+   + G+   A +++  M   G  PD V  ++LID  G  G +E   +
Sbjct: 197 VPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQ 256

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           ++ E +  G +  +++Y++L+   S     +KA   +  MK   +   V T +  + A C
Sbjct: 257 LVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFC 316

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               + + M++ + M+  G+ PN  TY+ L+    +   ++  ++LL +    G++PN+V
Sbjct: 317 KEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVV 376

Query: 446 MFKCII-GMC 454
            +  ++ G+C
Sbjct: 377 TYTVMVDGLC 386


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 163/337 (48%), Gaps = 10/337 (2%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           GL      +  L+    KS   +  + VF+E     ++ +V+++G +I GC + G + K 
Sbjct: 125 GLVPGSNTFNNLLILLIKSNFFEKAWRVFNE-TKGNVKLDVYSFGIMIKGCCEVGYLDKG 183

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
           F   G M    + P+ VV+  LI  C ++G ++R   +  +M  E+  V  +  T   L+
Sbjct: 184 FEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKM-GELDVV-ANQYTYTVLI 241

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYT---IAINCCSQTGDWEFACSVYDDMTKK 298
                 G      E+Y+ +    I   P VYT   +   CC+  G    A  ++D+M ++
Sbjct: 242 NGFFKMGLKKDGIELYEKMKLTGI--VPNVYTYNSMICRCCND-GKLNNAFELFDEMRER 298

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV  + V  + LI       +V  A  ++   K  G+S  +ISY++L+    +  N  KA
Sbjct: 299 GVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKA 358

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
             L+  MKS    P+++T N LI    +        +++ +M++ GL P+ +TY+IL+ A
Sbjct: 359 SSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDA 418

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
             R D++E    + S  ++ G++ ++ ++  +I G+C
Sbjct: 419 LVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLC 455



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 161/358 (44%), Gaps = 2/358 (0%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +F +++  C      +  F+VL  ++E GL  +  +YTTLI  C K+G ++   ++F++M
Sbjct: 166 SFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKM 225

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               +  N +TY  LI+G  K G        Y  M+   + P+   +N++I  C   G +
Sbjct: 226 GELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKL 285

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + AF++  EM      V  + +T   L+       +V  A  +   + +  +      Y 
Sbjct: 286 NNAFELFDEMRER--GVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYN 343

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+     G+ + A S+++ M   G  P     + LI     A       ++++E + +
Sbjct: 344 TLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEAR 403

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+S   ++Y+ LM A   + N +KA ++Y  M+   L   +     LI  LC    + + 
Sbjct: 404 GLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEA 463

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            ++   +  + L PN + Y+ ++    ++      L LL +  E+G++PN+  +   I
Sbjct: 464 SKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTI 521



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 162/365 (44%), Gaps = 8/365 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P +  +  L+  C  + D E   Q+   + E  + A+   YT LI    K G      E
Sbjct: 196 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 255

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++ +M   GI PNV+TY ++I  C   G++  AF  +  MR + V  + V +N LI    
Sbjct: 256 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 315

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           Q   V  A  ++  M  +   + P+ I+   L+    + G +D+A  ++  +       +
Sbjct: 316 QERRVLEAERLMCRMKRD--GLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPS 373

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I I   S+  +      +  +M  +G+ P +V  + L+D    +  +E AF+I  
Sbjct: 374 LATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYS 433

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             +  G+   I  Y  L+       + ++A +L++ +  + LKP     N +I   C   
Sbjct: 434 SMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEG 493

Query: 389 QLPKTMEVLSDMKSLGLCPNTITY-SILLVAC--ERKDDVEVGLMLLSQAKEDGVIPNLV 445
              + + +L +M   G+ PN  +Y S + + C  E+  + EV   LL    E G+ P++ 
Sbjct: 494 SSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEV---LLKDMIELGLKPSIS 550

Query: 446 MFKCI 450
           ++  I
Sbjct: 551 IWNMI 555



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 142/322 (44%), Gaps = 6/322 (1%)

Query: 67  FFNVCKSQKAIK--EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           FF +   +  I+  E  +   +VPN  + T+N ++  C +      AF++   ++E G+ 
Sbjct: 244 FFKMGLKKDGIELYEKMKLTGIVPN--VYTYNSMICRCCNDGKLNNAFELFDEMRERGVA 301

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
            +   Y TLI    +  +V     +   M   G+ PN+ +Y  LIDG    G + KA   
Sbjct: 302 CNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSL 361

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
           +  M+S    P    +N LI    ++       D++ EM  E   + P  +T   LM A 
Sbjct: 362 FNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREM--EARGLSPSKVTYTILMDAL 419

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
             +  +++A ++Y  + K  +     +Y + I+     GD + A  ++  + +  + P++
Sbjct: 420 VRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPND 479

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V  + +I      G    A  +L+E    G+   + SY+S +      + W +A  L + 
Sbjct: 480 VIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKD 539

Query: 365 MKSIKLKPTVSTMNALITALCD 386
           M  + LKP++S  N +  A  D
Sbjct: 540 MIELGLKPSISIWNMISKARFD 561



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 138/306 (45%), Gaps = 6/306 (1%)

Query: 149 VFHEMVNAGIEP---NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
           +FHE+    ++    +V  + A+I+   ++    +A   +  M  + + P    FN L+ 
Sbjct: 79  LFHELTQPHLDSFPTHVLIHEAIINAHVRSQLPEQALFYFNQMIGRGLVPGSNTFNNLLI 138

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              +S   ++A+ V  E    V     D  + G ++K C   G +D+  EV   + +  +
Sbjct: 139 LLIKSNFFEKAWRVFNETKGNV---KLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGL 195

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                VYT  I+ C + GD E    ++  M +  V+ ++   + LI+     G  +   E
Sbjct: 196 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 255

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + ++ K  GI   + +Y+S++  C N      A EL++ M+   +   V T N LI  LC
Sbjct: 256 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLC 315

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              ++ +   ++  MK  GL PN I+Y+ L+       +++    L +Q K  G  P+L 
Sbjct: 316 QERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLA 375

Query: 446 MFKCII 451
            +  +I
Sbjct: 376 TYNILI 381



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 9/221 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    ++ R+ E   L+  M+R GL      Y+      C      K +  F ++
Sbjct: 306 TYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQM 365

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             +   P+L+T+N+L++  + +K+S G   ++R ++  GL      YT L+    +S  +
Sbjct: 366 KSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNI 425

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +  F+++  M  AG+  +++ YG LI G    G + +A   +  +   ++KP+ V++N +
Sbjct: 426 EKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTM 485

Query: 204 ITACGQSGAVDRAFDVLAEM--NAEVHPVDPDHITIGALMK 242
           I    + G+  RA  +L EM  N  V  V   + TI  L K
Sbjct: 486 IYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCK 526


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 176/386 (45%), Gaps = 23/386 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRF 83
           +Y  L+R     G++     ++ +M+R G+     VY+A    + K   S+KA++   R 
Sbjct: 209 TYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRM 268

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K        T+ ++++V   +     + +V R ++  G K +   YT L+   A+ G  
Sbjct: 269 KKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLC 328

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +   EVF EM  AG EP+V+ Y AL++  ++AG    A   + +M     +PDR  +N L
Sbjct: 329 EKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNIL 388

Query: 204 ITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           + A G++G    A     E+  + + P    H+    L+ A A +G V R  EV   +HK
Sbjct: 389 VDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHML---LLSAHARSGNVARCEEVMAQLHK 445

Query: 263 YNIKGTPEVYTIAINCCSQTG---DWE--FACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             ++         +N   + G   D E  FA     D    G  PD    + L++  G A
Sbjct: 446 SGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGA-PDTSTYNVLVNAYGRA 504

Query: 318 G---KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
           G   ++EAAF  L     +G++  +++++S +GA +  K + + L ++E M      P  
Sbjct: 505 GYLDRMEAAFRSL---AARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDA 561

Query: 375 STMNALITALCDGDQLPKTMEVLSDM 400
            T   L+ A  D  Q+ +   ++  M
Sbjct: 562 GTAKVLLAACSDERQVEQVTAIVRSM 587



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 150/370 (40%), Gaps = 6/370 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT  T+ +L+     S     A  V+  +Q  G+     +Y   +    K+   +   EV
Sbjct: 205 PTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEV 264

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M       N  TY  +I+   KA Q   +   +  M+S   KP+   + AL+ A  +
Sbjct: 265 YQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAR 324

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  ++A +V  EM    H  +PD     ALM+A + AG    A E++ ++     +   
Sbjct: 325 EGLCEKAEEVFEEMQQAGH--EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 382

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I ++   + G  + A + + ++ ++G+ P       L+     +G V    E++ +
Sbjct: 383 ASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQ 442

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALITALC 385
               G+     + ++++ A   A        L+  M+    +    P  ST N L+ A  
Sbjct: 443 LHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNAYG 502

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L +       + + GL  + +T++  + A  RK +    L +  +  + G  P+  
Sbjct: 503 RAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAG 562

Query: 446 MFKCIIGMCS 455
             K ++  CS
Sbjct: 563 TAKVLLAACS 572



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 166/393 (42%), Gaps = 30/393 (7%)

Query: 89  NPTLSTFNMLMSVCASSK---DSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSG 141
            P +  +N+L+      +   ++E A+  L       L+A C      Y  L+     SG
Sbjct: 169 RPDIICYNLLIDAYGQKRQLSEAEAAYMAL-------LEARCVPTEDTYALLLRAYCGSG 221

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++     V  EM   GI P    Y A +DG  KA    KA   Y  M+ +  + +   + 
Sbjct: 222 QLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYX 281

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I   G++     +  V  EM +      P+  T  AL+ A A  G  ++A EV++ + 
Sbjct: 282 LMINVYGKANQPMSSLRVFREMKSV--GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 339

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +   +     Y   +   S+ G  + A  ++  M   G  PD    + L+D  G AG  +
Sbjct: 340 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQ 399

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A    QE K QG+   + S+  L+ A + + N  +  E+   +    L+P    +NA++
Sbjct: 400 EAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAML 459

Query: 382 TA------LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK---DDVEVGLMLL 432
            A      L D ++L   ME   D  S G  P+T TY++L+ A  R    D +E     L
Sbjct: 460 NAYGRAGRLDDMERLFAAME-RGDGASAG-APDTSTYNVLVNAYGRAGYLDRMEAAFRSL 517

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
           +     G+  ++V +   IG  +R+ E  + L 
Sbjct: 518 AA---RGLAADVVTWTSRIGAYARKKEYGQCLR 547



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 132/304 (43%), Gaps = 2/304 (0%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           +  +   P++  Y  LID   +  Q+++A  AY  +      P    +  L+ A   SG 
Sbjct: 163 LRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQ 222

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           + RA  V++EM  + + + P      A +     A   ++A EVY+ + K   +   Z Y
Sbjct: 223 LHRAEGVISEM--QRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTY 280

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
            + IN   +      +  V+ +M   G  P+    +AL++     G  E A E+ +E + 
Sbjct: 281 XLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 340

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G    + +Y++LM A S A   Q A E++  M+ +  +P  ++ N L+ A        +
Sbjct: 341 AGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQE 400

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
                 ++K  G+ P   ++ +LL A  R  +V     +++Q  + G+ P+      ++ 
Sbjct: 401 AEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLN 460

Query: 453 MCSR 456
              R
Sbjct: 461 AYGR 464



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 165/402 (41%), Gaps = 22/402 (5%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           +++ +  + D   Y  LI    +  ++      +  ++ A   P   TY  L+     +G
Sbjct: 162 VLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSG 221

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           Q+ +A G    M+   + P   V+NA +    ++   ++A +V   M  E    + +  T
Sbjct: 222 QLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZ--T 279

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              ++     A Q   +  V++ +     K     YT  +N  ++ G  E A  V+++M 
Sbjct: 280 YXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 339

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           + G  PD    +AL++    AG  + A EI    ++ G      SY+ L+ A   A   Q
Sbjct: 340 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQ 399

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A   ++ +K   ++PT+ +   L++A      + +  EV++ +   GL P+T   + +L
Sbjct: 400 EAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAML 459

Query: 417 VACERK---DDVEVGLMLLSQAKEDGV---IPNLVMFKCIIGMCSR-----------RYE 459
            A  R    DD+E   +  +  + DG     P+   +  ++    R           R  
Sbjct: 460 NAYGRAGRLDDME--RLFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSL 517

Query: 460 KARTLNEHVLSFNSG-RPQIENKWTSLALMVYREAIVAGTIP 500
            AR L   V+++ S        K     L V+ E + AG  P
Sbjct: 518 AARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYP 559



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 16/183 (8%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PT+ +  +L+S  A S +     +V+  + ++GL+ D      ++    ++G++D M  
Sbjct: 414 RPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMER 473

Query: 149 VFHEM-----VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +F  M      +AG  P+  TY  L++   +AG + +   A+  + ++ +  D V + + 
Sbjct: 474 LFAAMERGDGASAGA-PDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSR 532

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRAREVYKM 259
           I A  +     +   V  EM      VD    PD  T   L+ AC++  QV++   + + 
Sbjct: 533 IGAYARKKEYGQCLRVFEEM------VDAGCYPDAGTAKVLLAACSDERQVEQVTAIVRS 586

Query: 260 IHK 262
           +HK
Sbjct: 587 MHK 589



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 81/211 (38%), Gaps = 17/211 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQKAIKEA 80
           SYN L+    R G   E     ++++++G+    K +      HAR  NV + ++ + + 
Sbjct: 384 SYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQ- 442

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASS---KDSEGAFQVLRLVQEAGLKA-DCKLYTTLITT 136
               K    P     N +++    +    D E  F  +     A   A D   Y  L+  
Sbjct: 443 --LHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVNA 500

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             ++G +D M   F  +   G+  +V T+ + I   A+  +  +    +  M      PD
Sbjct: 501 YGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPD 560

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
                 L+ AC     V++   ++  M+ + 
Sbjct: 561 AGTAKVLLAACSDERQVEQVTAIVRSMHKDA 591


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/428 (24%), Positives = 191/428 (44%), Gaps = 7/428 (1%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           QG + E + LL D+      + D V Y+A    +C +++         ++V     P + 
Sbjct: 194 QGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIV 253

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           TF+ L+     +   E   +V   + E G   D ++Y T+I    K  +++    + + M
Sbjct: 254 TFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRM 313

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            + G+ PNV  Y  L+ G   A +  +A G    M  K+   D V FN L+    Q+G V
Sbjct: 314 PSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLV 373

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           DR  +VL +M    H   PD IT   ++      G +D A  + + +     +     YT
Sbjct: 374 DRVIEVLEQMLE--HGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYT 431

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I +        W  A  +   M ++G  P+ V  + LI+F    G VE A E+L++    
Sbjct: 432 IVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVN 491

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G S  +ISYS+++     A N  +ALEL   M    + P     +++ +AL    ++ K 
Sbjct: 492 GCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKV 551

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
           +++  +++   +  + + Y+ ++ +  ++ + +  +  L+     G +PN   +  +I G
Sbjct: 552 IQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRG 611

Query: 453 MCSRRYEK 460
           + S  + K
Sbjct: 612 LASEGFVK 619



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/438 (21%), Positives = 187/438 (42%), Gaps = 18/438 (4%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+   ++Y  L+R    +GRI++ + +L+DM R+G      +YH      C++    + A
Sbjct: 107 VAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRAS-GFRGA 165

Query: 81  FRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLIT 135
               + +        +   N+++         + A ++LR L+   G + D   Y  ++ 
Sbjct: 166 VGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLR 225

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
               + +   + ++  EMV AG  PN+ T+  LI    + G   +    +  M      P
Sbjct: 226 GLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAP 285

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D  ++  +I    +   ++ A  +L  M +  + + P+ +    L+K   +A   DR  E
Sbjct: 286 DVRMYATIIDGVCKEERLEVARGILNRMPS--YGLSPNVVCYNTLLKGLCSA---DRWEE 340

Query: 256 VYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
              ++ +   K  P     + I ++   Q G  +    V + M + G +PD +  + +I+
Sbjct: 341 AEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVIN 400

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G ++ A  +L+     G     +SY+ ++    +A+ W  A EL   M      P
Sbjct: 401 GFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPP 460

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T N LI  LC    + + +E+L  M   G  P+ I+YS ++    +  + +  L LL
Sbjct: 461 NPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELL 520

Query: 433 SQAKEDGVIPNLVMFKCI 450
           +   + G+ PN +++  I
Sbjct: 521 NVMVKKGMSPNTIIYSSI 538



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/303 (21%), Positives = 123/303 (40%), Gaps = 43/303 (14%)

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y A++ G  +AGQ+A A        S  V P+   +  L+ A    G +  A  VL +M 
Sbjct: 82  YNAMVAGYCRAGQLAAARRL---AASVPVAPNAYTYFPLVRALCARGRIADALAVLDDMA 138

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
                            + CA                      TP +Y + +    +   
Sbjct: 139 ----------------RRGCAP---------------------TPPMYHVTLEAACRASG 161

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYS 343
           +  A  V  D+  +G   D    + ++      G V+ A  +L++   + G    ++SY+
Sbjct: 162 FRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYN 221

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +++     A+ W    +L E M +    P + T + LI  LC      +  EV + M   
Sbjct: 222 AVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEH 281

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 461
           G  P+   Y+ ++    +++ +EV   +L++    G+ PN+V +  ++ G+CS  R+E+A
Sbjct: 282 GCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEA 341

Query: 462 RTL 464
             L
Sbjct: 342 EGL 344



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/182 (17%), Positives = 84/182 (46%), Gaps = 5/182 (2%)

Query: 46  DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSV 101
           +L+  M ++G       ++     +CK +  +++A    K +     +P L +++ ++  
Sbjct: 448 ELMSQMIQQGCPPNPVTFNTLINFLCK-KGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 506

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
              + +++ A ++L ++ + G+  +  +Y+++ +  +  G+++ + ++F  + +  +  +
Sbjct: 507 LGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSD 566

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
              Y A+I    K G+  +A      M S    P+   +  LI      G V  A ++L 
Sbjct: 567 AVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILT 626

Query: 222 EM 223
           E+
Sbjct: 627 EL 628


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/433 (22%), Positives = 199/433 (45%), Gaps = 9/433 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              TFN+L+   A+    + A  +   +++ G+K D   Y T+I    + GK+D   E F
Sbjct: 393 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 452

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           ++M++ G+ P+ + Y  LI G    G + KA      + +  +  D V F+++I    + 
Sbjct: 453 NQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 512

Query: 211 GAVDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           G V  A ++    +N  +HP   D +    LM      G++++A  V+  +    I+   
Sbjct: 513 GRVMDAQNIFDLTVNVGLHP---DAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 569

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   +N   + G  +   S++ +M ++G+ P  +  S +ID    AG+   A     E
Sbjct: 570 VVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHE 629

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI++ I +Y+ ++      + + +A+ L++ ++++ +K  + T+N +I  +    +
Sbjct: 630 MTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRR 689

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++ + +    L P+ +TYSI++    ++  VE    + S  +  G  PN  +   
Sbjct: 690 VEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNH 749

Query: 450 IIGMCSRRYEKAR 462
           ++    ++ E  R
Sbjct: 750 VVRELLKKNEIVR 762



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 194/442 (43%), Gaps = 25/442 (5%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +L+ D       +  A     C+S  A+  A  F +
Sbjct: 38  VREGTLRPEEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVAL-FNR 96

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ +  +   L+   
Sbjct: 97  AASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGF 156

Query: 138 AKSGKVDAMFEV-FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--K 194
            ++ + D   ++  H     G  P+V +Y  L+      G+  +A     +M        
Sbjct: 157 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS 216

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ V +N +I    + G V++A D+  EM     P  PD +T  +++ A   A  +D+A 
Sbjct: 217 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP--PDLVTYNSVVHALCKARAMDKAE 274

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
              + +    +      Y   I   S TG W+ A  V+ +M +  ++PD V LS L+   
Sbjct: 275 AFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSL 334

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              GK++ A ++      +G +  + SY+ ++   +         +L++ M    + P  
Sbjct: 335 CKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDF 394

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  +   +Q
Sbjct: 395 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQ 454

Query: 435 AKEDGVIPNLVMFKCII-GMCS 455
             + GV P+   + C+I G C+
Sbjct: 455 MIDQGVAPDKYAYNCLIQGFCT 476



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 158/363 (43%), Gaps = 4/363 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T+N ++     ++  + A   LR +    +  +   Y  LI   + +G+      V
Sbjct: 252 PDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 311

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM    I P+V T   L+    K G++ +A   +  M  K   PD   +N ++     
Sbjct: 312 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 371

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +    D+   M  +   + PD  T   L+KA AN G +D+A  ++  +  + +K   
Sbjct: 372 KGCLVDMTDLFDLMLGD--GIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDV 429

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQ 328
             Y   I    + G  + A   ++ M  +GV PD+   + LI  F  H G +  A E++ 
Sbjct: 430 VTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTH-GSLLKAKELIS 488

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  N G+ + I+ +SS++           A  +++   ++ L P     + L+   C   
Sbjct: 489 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVG 548

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ K + V   M S G+ PN + Y  L+    +   ++ GL L  +  + G+ P+ +++ 
Sbjct: 549 KMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 608

Query: 449 CII 451
            II
Sbjct: 609 III 611



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 161/341 (47%), Gaps = 11/341 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + P  HTY  L+D C +A +   A   +G +    ++ + ++ N L+    ++   D A 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIA 275
           D+L     E+  V PD  +   L+K+  + G+  +A ++ +M+ +     +P V  Y   
Sbjct: 167 DILLHRTPELGCV-PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTV 225

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+   + GD   AC ++ +M ++G+ PD V  ++++     A  ++ A   L++  N+ +
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 285

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
                +Y++L+   S+   W++A+ +++ M+   + P V T++ L+ +LC   ++ +  +
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 345

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           V   M   G  P+  +Y+I+L     K  +     L      DG+ P+   F  +I    
Sbjct: 346 VFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLI---- 401

Query: 456 RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 496
           + Y     L++ ++ FN    ++ +      ++ YR  I A
Sbjct: 402 KAYANCGMLDKAMIIFN----EMRDHGVKPDVVTYRTVIAA 438


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 172/396 (43%), Gaps = 6/396 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L ++G +     +LE+M   G+     ++++    + +    ++   R    +    +  
Sbjct: 381 LCKEGEMERAERILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKP 440

Query: 95  FNMLMSVCA----SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + LM+ C       +  + A  +   + E GL  +      LI    +   +    EV 
Sbjct: 441 NDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVL 500

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             MVN G+E +  TY  +I GC K  ++ +A      M  K  KPD  +FN++I A    
Sbjct: 501 RTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDL 560

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G ++ A  +L +M  ++  V PD ++ G ++     A  + +A E    +    +K    
Sbjct: 561 GKMEEALHLLGQM--KIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAV 618

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           +Y   I    + G+   A  V D M   G+ P  V   +L+ +  HAG V+ A  + +++
Sbjct: 619 IYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQS 678

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           +   I VG++ Y+ ++          +A+  +E M+S  + P   T   L+ A C     
Sbjct: 679 RKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNN 738

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
            +  ++  +M S G+ P+ ++Y+ L+    + D ++
Sbjct: 739 EEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLD 774



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 171/372 (45%), Gaps = 40/372 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---T 91
           L R GR+   + L+ +M ++G+   D +  A    +C+ ++  +    + K++       
Sbjct: 417 LQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCIN 476

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++T N L+      K+ +GA +VLR +   G++ D   Y  +I  C K  K++   ++  
Sbjct: 477 IATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRD 536

Query: 152 EMVNAG-----------------------------------IEPNVHTYGALIDGCAKAG 176
           +M+  G                                   ++P+V +YG +IDG  KA 
Sbjct: 537 DMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAK 596

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
            + KA      + +  +KP+ V++NALI   G++G +  A  VL  M  E   + P ++T
Sbjct: 597 DIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTM--ESIGIQPTNVT 654

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +LM    +AG VD A+ +++   K +I+     YTI I    + G  + A + +++M 
Sbjct: 655 YCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMR 714

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            + + P+++  + L+     +G  E A ++  E  + GI    +SY++L+   S   +  
Sbjct: 715 SRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLD 774

Query: 357 KALELYEHMKSI 368
           KA+E    + SI
Sbjct: 775 KAIEKAAEISSI 786



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 199/481 (41%), Gaps = 58/481 (12%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKV--YHARFFNVCKSQK--- 75
           V+   +SY  +I+     G++ +   +L D+   GL        Y+     +CKS +   
Sbjct: 225 VTPNGYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDE 284

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           AI+   R  +    P++ TF +L++    S        +LR ++  G+  +  +   LI 
Sbjct: 285 AIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELID 344

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              + G       +F EMV+  ++    TY  +     K G++ +A      M S  +  
Sbjct: 345 WHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTI 404

Query: 196 DRVVFNALITACGQ-SGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANA-GQVDR 252
              +FN+++    Q +G ++    +++EM    + P D       ALM AC     Q  R
Sbjct: 405 HSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPND-------ALMTACTKQLCQGRR 457

Query: 253 AREV----YKMIHK-------------------YNIKGTPEV---------------YTI 274
            +E      KM+ K                    N+KG  EV               Y I
Sbjct: 458 HQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNI 517

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I  C +    E A  + DDM +KG  PD    +++I      GK+E A  +L + K +G
Sbjct: 518 MIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEG 577

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +   ++SY +++     AK+ QKA E    + +  LKP     NALI        +   +
Sbjct: 578 VQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAI 637

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
            VL  M+S+G+ P  +TY  L+        V+    +  Q++++ +   +V +  +I G+
Sbjct: 638 GVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGL 697

Query: 454 C 454
           C
Sbjct: 698 C 698



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/426 (21%), Positives = 183/426 (42%), Gaps = 42/426 (9%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           AR  N+  + K   E      + PN   S  +M+ ++C   K  +G F++L  +  AGL+
Sbjct: 204 ARTGNLGATCKVFDEMRDCKTVTPN-GYSYTSMIKALCKVGKVDDG-FKILSDLIHAGLQ 261

Query: 125 --ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
             A    Y  L+    KSG+VD    +   M  + + P++ T+G LI+G  ++ +  +  
Sbjct: 262 QSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVG 321

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
                M    + P+ V+ N LI    + G    A  +  EM ++   +    +T   + +
Sbjct: 322 ALLREMEGLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSK--EMKSTAVTYNLIAR 379

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFACSVYDDMTKKGVI 301
           A    G+++RA  + + +    +     ++ ++      +TG  E    +  +M K+G+ 
Sbjct: 380 ALCKEGEMERAERILEEMLSTGMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMK 439

Query: 302 PDEVFLSA-----------------------------------LIDFAGHAGKVEAAFEI 326
           P++  ++A                                   LI        ++ A E+
Sbjct: 440 PNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEV 499

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L+   N+G+ +  I+Y+ ++  C      ++AL+L + M     KP     N++I A CD
Sbjct: 500 LRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCD 559

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             ++ + + +L  MK  G+ P+ ++Y  ++    +  D++     L++    G+ PN V+
Sbjct: 560 LGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVI 619

Query: 447 FKCIIG 452
           +  +IG
Sbjct: 620 YNALIG 625



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 156/394 (39%), Gaps = 75/394 (19%)

Query: 133 LITTCAKS---GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           LI TC  S   G +    + FH + +    P+V T  AL++  A+ G +      +  MR
Sbjct: 161 LINTCVTSSARGSLRLAVDAFHVLSSRRASPSVKTCNALLEALARTGNLGATCKVFDEMR 220

Query: 190 S-KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
             K V P+   + ++I A  + G VD  F +L+++           +    LM A   +G
Sbjct: 221 DCKTVTPNGYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSG 280

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           +VD A  +   + +  +  +   + I IN   ++  +    ++  +M   G+ P+EV  +
Sbjct: 281 RVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICN 340

Query: 309 ALIDF---AGH--------------------------------AGKVEAAFEILQEAKNQ 333
            LID+    GH                                 G++E A  IL+E  + 
Sbjct: 341 ELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLST 400

Query: 334 GISV--------------------------------GIISYSSLMGACS----NAKNWQK 357
           G+++                                G+    +LM AC+      +  Q+
Sbjct: 401 GMTIHSGLFNSVVAGLLQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQE 460

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A+ ++  M    L   ++T NALI  LC+G  +    EVL  M + G+  + ITY+I++ 
Sbjct: 461 AVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQ 520

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            C +   +E  L L       G  P+  MF  II
Sbjct: 521 GCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSII 554


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 170/373 (45%), Gaps = 4/373 (1%)

Query: 88  PNPTLSTFNMLMSVCASSKDS-EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P P +  FN L+S     +   +    + + ++ AGL  +      LI        VD  
Sbjct: 86  PLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDLG 145

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           F V  +++  G++P + T+  LI+G  KAG+ A+A   +  M ++  +PD   +  +I  
Sbjct: 146 FSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIING 205

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G    A  ++ +M  EV    PD +T   L+ +      V+ A +++  +    I 
Sbjct: 206 LCKMGETAAAAGLIKKM-GEV-GCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGIS 263

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            T   YT  I        W+ A ++ ++MT   ++PD V  S LID     G V  A  +
Sbjct: 264 PTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGV 323

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L+     G+   +I+Y+SLM   S      +A +L++ M +   KP V + + LI   C 
Sbjct: 324 LKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCM 383

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             ++ +  ++ ++M   GL PNT++Y+ L+ A  +   +     L      +G +P+L  
Sbjct: 384 VKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCT 443

Query: 447 FKCII-GMCSRRY 458
           +  ++ G C + Y
Sbjct: 444 YSVLLEGFCKQGY 456



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 162/362 (44%), Gaps = 2/362 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  +++      ++  A  +++ + E G + D   Y+TLI +  K   V+   ++
Sbjct: 194 PDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDI 253

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M   GI P V +Y +LI G     +  +A      M S N+ PD V F+ LI    +
Sbjct: 254 FSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCK 313

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V  A  VL  M      V+P+ IT  +LM   +   +V  AR+++ ++     K   
Sbjct: 314 EGNVLEAQGVLKTMTE--MGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDV 371

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+I IN        + A  ++++M  +G+ P+ V  + LI      GK+  A E+ ++
Sbjct: 372 FSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKD 431

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G    + +YS L+          KA  L+  M+   LKP +     LI ++C    
Sbjct: 432 MHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGN 491

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L    ++ S++   GL P+   Y+ ++    ++  ++  L    + +EDG  PN   +  
Sbjct: 492 LNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNV 551

Query: 450 II 451
           II
Sbjct: 552 II 553



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 168/374 (44%), Gaps = 3/374 (0%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +  KL   PT+ TF  L++    + +   A ++   +   G + D   YTT+I    K G
Sbjct: 151 KVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMG 210

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +  A   +  +M   G +P+V TY  LID   K   V +A   +  M++K + P  V + 
Sbjct: 211 ETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYT 270

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +LI           A  +L EM +    + PD +T   L+      G V  A+ V K + 
Sbjct: 271 SLIQGLCSFSRWKEASAMLNEMTS--LNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMT 328

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  ++     Y   ++  S   +   A  ++D M  +G  PD    S LI+      +++
Sbjct: 329 EMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRID 388

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A ++  E  +QG++   +SY++L+ A       ++A EL++ M +    P + T + L+
Sbjct: 389 EAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLL 448

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
              C    L K   +   M+   L PN + Y+IL+ +  +  ++     L S+    G+ 
Sbjct: 449 EGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQ 508

Query: 442 PNLVMFKCII-GMC 454
           P++ ++  II G+C
Sbjct: 509 PDVQIYTTIINGLC 522



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/418 (21%), Positives = 174/418 (41%), Gaps = 13/418 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N L + G  ++ ++L +DM  +G       Y      +CK  +    A    K+      
Sbjct: 169 NGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQ 228

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T++ L+      +    A  +   ++  G+      YT+LI       +      +
Sbjct: 229 PDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAM 288

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            +EM +  I P++ T+  LID   K G V +A G    M    V+P+ + +N+L+     
Sbjct: 289 LNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSL 348

Query: 210 SGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNI 265
              V  A   FDV+     +     PD  +   L+       ++D A++++ +MIH+   
Sbjct: 349 QMEVVEARKLFDVMITRGCK-----PDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLT 403

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
             T   YT  I+   Q G    A  ++ DM   G +PD    S L++     G +  AF 
Sbjct: 404 PNTVS-YTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFR 462

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + +  +   +   ++ Y+ L+ +   + N   A +L+  +    L+P V     +I  LC
Sbjct: 463 LFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLC 522

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
               L + +E    M+  G  PN  +Y++++    +  D    + L+ + ++ G + +
Sbjct: 523 KEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 144/299 (48%), Gaps = 7/299 (2%)

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA--EV 227
           D  +    +  A  ++  M  +   P  + FN L++A  +   + + +D +  ++   E+
Sbjct: 63  DASSSFRNIDDALASFNHMLHRKPLPCIIQFNKLLSAIVR---MRQYYDAVISLSKQMEL 119

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + P+  T+  L+        VD    V   + K  ++ T   +T  IN   + G++  
Sbjct: 120 AGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQ 179

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  ++DDM  +G  PD    + +I+     G+  AA  ++++    G    +++YS+L+ 
Sbjct: 180 ALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLID 239

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           +    +   +AL+++ +MK+  + PTV +  +LI  LC   +  +   +L++M SL + P
Sbjct: 240 SLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMP 299

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTL 464
           + +T+S+L+    ++ +V     +L    E GV PN++ +  ++   S + E  +AR L
Sbjct: 300 DIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKL 358



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 76/174 (43%), Gaps = 9/174 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  LI    + G++ E  +L +DM   G L     Y       CK Q  + +AFR F+ 
Sbjct: 408 SYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCK-QGYLGKAFRLFRA 466

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P L  + +L+     S +   A ++   +   GL+ D ++YTT+I    K G 
Sbjct: 467 MQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGL 526

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
           +D   E F +M   G  PN  +Y  +I G  +    ++A    G MR K    D
Sbjct: 527 LDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 203/456 (44%), Gaps = 48/456 (10%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----------QKA 76
           +Y+ LI+    + RISE   L   M++ G       Y      +C++          Q+ 
Sbjct: 228 TYSTLIKGLCMKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEM 287

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + +  R+  +   PTL ++++++      +  + A ++ + ++  G+  D   YTTLI  
Sbjct: 288 LNDTGRY-GIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHG 346

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
              SGK +    +F+EM++ GI+P+V T   LID   K G+V +A     ++  +   PD
Sbjct: 347 FCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPD 406

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V    L+        + +A  +  +M        P+ +T   LMK    +G +  A E+
Sbjct: 407 VVTCTTLVKGLCMKHRISKATQLFLKMQK--LGCMPNVVTCATLMKGLCQSGNIKIALEL 464

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +K                  N  S T  +   C            P+ +  S +ID    
Sbjct: 465 HK------------------NMLSDTSPYGINCK-----------PNAISYSIIIDGLCK 495

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G+ + A E+ +E K  G+   +ISY+SL+     +  W+ A  L+  M  I ++P V+T
Sbjct: 496 CGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTT 555

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            + LI  LC   ++ +  E+L  M   G  PNT+TY+ L+      D +     L  + +
Sbjct: 556 FSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQ 615

Query: 437 EDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLS 470
           + G +P++V +  ++ G+C +   + A  L++ +LS
Sbjct: 616 KLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLS 651



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 220/505 (43%), Gaps = 73/505 (14%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y+ LI+    + RISE   L   M++ G       Y      +C++ K I  A    + 
Sbjct: 47  TYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGK-INIALHLHQE 105

Query: 87  VPN----------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + N          PTL ++++++      +  + A ++ + ++  G+  D   YT+LI  
Sbjct: 106 MLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHG 165

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             +SGK +    +F+EM++ GI  +V T   LID   K G+V +A     +M  +    D
Sbjct: 166 FCRSGKWEKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILD 225

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V ++ LI        +  A  +   M+ +     PD I  G LMK     G ++ A ++
Sbjct: 226 IVTYSTLIKGLCMKHRISEATRLF--MSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQL 283

Query: 257 YK-MIH---KYNIKGTPEV-------------------------------------YTIA 275
           ++ M++   +Y IK  P +                                     YT  
Sbjct: 284 HQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTL 343

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+    +G WE A  ++++M   G+ PD    S LID     GKV  A ++L+    +G 
Sbjct: 344 IHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGC 403

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              +++ ++L+          KA +L+  M+ +   P V T   L+  LC    +   +E
Sbjct: 404 IPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALE 463

Query: 396 V----LSDMKSLGL-C-PNTITYSIL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
           +    LSD    G+ C PN I+YSI+   L  C R+D+      L  + K  GVIP+++ 
Sbjct: 464 LHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEAR---ELFKEMKALGVIPDVIS 520

Query: 447 FKCII-GMC-SRRYEKARTL-NEHV 468
           +  +I G C S +++ A+ L NE V
Sbjct: 521 YTSLIHGFCRSGKWKDAKYLFNEMV 545



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 165/363 (45%), Gaps = 16/363 (4%)

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
            G++ D      LI    K GKV    E+   MV  G   ++ TY  LI G     ++++
Sbjct: 4   VGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISE 63

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH----PVDPDHIT 236
           A   +  M+    +PD + +  L+    Q+G ++ A  +  EM  +         P  ++
Sbjct: 64  ATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVS 123

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              ++       + D ARE++K +    +      YT  I+   ++G WE A  ++++M 
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEML 183

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
             G+  D    S LID     GKV  A E+L+    +G  + I++YS+L+          
Sbjct: 184 DVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRIS 243

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM----EVLSDMKSLGL-C-PNTI 410
           +A  L+  M+ +  +P       L+  LC    +   +    E+L+D    G+ C P  I
Sbjct: 244 EATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLI 303

Query: 411 TYSILL--VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNE 466
           +YSI++  +  +R++D      L  + K  G++P+++ +  +I G C S ++EKA+ L  
Sbjct: 304 SYSIIIDGLCKDRRED--EARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFN 361

Query: 467 HVL 469
            +L
Sbjct: 362 EML 364



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 168/386 (43%), Gaps = 24/386 (6%)

Query: 89  NPTLSTFNMLMSV-CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P ++T  +L+ + C   K  E A ++L ++ + G   D   Y+TLI       ++    
Sbjct: 7   QPDVTTSGVLIDMFCKEGKVIE-ANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEAT 65

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF----------GAYGIMRSKNVKPDR 197
           ++F  M   G  P+   YG L+ G  + G++  A             YGI      KP  
Sbjct: 66  QLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGI----KCKPTL 121

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           V ++ +I    +    D A ++  EM A+   + PD I+  +L+     +G+ ++A+ ++
Sbjct: 122 VSYSIIIDGLCKDRREDEARELFKEMKAQ--GMMPDVISYTSLIHGFCRSGKWEKAKCLF 179

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             +    I+      ++ I+   + G    A  + + M ++G I D V  S LI      
Sbjct: 180 NEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMK 239

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS------IKLK 371
            ++  A  +    +  G     I+Y +LM       N   AL+L++ M +      IK K
Sbjct: 240 HRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCK 299

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           PT+ + + +I  LC   +  +  E+  +MK+ G+ P+ I+Y+ L+         E    L
Sbjct: 300 PTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 359

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSRR 457
            ++  + G+ P++     +I M  ++
Sbjct: 360 FNEMLDVGIQPDVTTSSVLIDMLCKK 385



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 11/195 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           + L ++G++ E  +LLE M ++G +     Y      +C + + I EA + F    KL  
Sbjct: 561 DMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDR-ISEATQLFMKMQKLGC 619

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQV-LRLVQEAG-----LKADCKLYTTLITTCAKSGK 142
            P + T+  LM     + + + A ++  +++ + G      K D   Y+ +I    K G+
Sbjct: 620 LPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGR 679

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            D   E+F EM   G+ PNV +Y +LI G  ++G++  A   +  M  + V+ + V ++ 
Sbjct: 680 EDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSV 739

Query: 203 LITACGQSGAVDRAF 217
           +I    + G +D+A 
Sbjct: 740 MIHGFCKEGQIDKAL 754



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 12/185 (6%)

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G+ PD      LID     GKV  A E+L+    +G  + I++YS+L+        
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM----EVLSDMKSLGL-C-PN 408
             +A +L+  MK +  +P       L+  LC   ++   +    E+L+D    G+ C P 
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 409 TITYSILL--VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
            ++YSI++  +  +R++D      L  + K  G++P+++ +  +I G C S ++EKA+ L
Sbjct: 121 LVSYSIIIDGLCKDRRED--EARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCL 178

Query: 465 NEHVL 469
              +L
Sbjct: 179 FNEML 183


>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
 gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 183/403 (45%), Gaps = 15/403 (3%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLS-----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           + +  +  A  FFK + N  L      TF +++   A     +    +L+ ++  G    
Sbjct: 51  RQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCS 110

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
             L+ ++I+   + G  +   E+F+ +   G +P+V  Y  ++D      ++   +  Y 
Sbjct: 111 EDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYR 170

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M+    +P+   +N L+ A  ++  VD A  +L EM+ +     PD ++   ++ +   
Sbjct: 171 DMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNK--GCCPDAVSYTTVISSMCE 228

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G V   RE+ +       +    VY   IN   +  D++ A  +  +M +KG+ P+ + 
Sbjct: 229 VGLVKEGRELAE-----RFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVIS 283

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM- 365
            S LI+   ++G++E AF  L +   +G    I + SSL+  C        AL+L+  M 
Sbjct: 284 YSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMI 343

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           +   L+P V   N L+   C    + K + V S M+ +G  PN  TY  L+    ++  +
Sbjct: 344 RGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSL 403

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNE 466
           +  + + ++    G  PN+V++  ++    R  ++++A +L E
Sbjct: 404 DGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIE 446



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 197/470 (41%), Gaps = 59/470 (12%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQKAIKEAF 81
           +YN L++      ++     LL +M  KG       Y     ++C     K  + + E F
Sbjct: 183 TYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERF 242

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
                   P +S +N L++      D +GAF+++R + E G+  +   Y+TLI     SG
Sbjct: 243 E-------PVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSG 295

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM-RSKNVKPDRVVF 200
           +++  F    +M+  G  PN++T  +L+ GC   G    A   +  M R   ++P+ V +
Sbjct: 296 QIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAY 355

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY--- 257
           N L+      G + +A  V + M  E     P+  T G+L+   A  G +D A  ++   
Sbjct: 356 NTLVQGFCSHGNIVKAVSVFSHM--EEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKM 413

Query: 258 --------------------------------KMIHKYNIKGTPEVYTIAINCCSQTGDW 285
                                           +++ K N   +   +   I      G  
Sbjct: 414 LTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRL 473

Query: 286 EFACSVYDDMTKKGVIPDEVF-LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
           ++A  V+  M ++   P  +   + L+D    A ++E A+ + +E   +G+     +Y++
Sbjct: 474 DWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNT 533

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L+    NA     AL+L   M      P   TMN +I A C   +  +  ++L D+ S G
Sbjct: 534 LLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQML-DLVSCG 592

Query: 405 ---LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                P+ I+Y+ ++    R +  E G++LL +    G++P++  +  +I
Sbjct: 593 RRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLI 642



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 150/365 (41%), Gaps = 43/365 (11%)

Query: 232 PDHITIGAL--MKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFA 288
           P+H  I  L  +K       V  A   +K I   N+ K TP  + + I   +  G  +  
Sbjct: 36  PNHAEIKELDVVKRLRQESCVPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSV 95

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             +   M  +G    E    ++I      G  E A E+    K  G    +  Y+ ++  
Sbjct: 96  QYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDT 155

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
                  Q    +Y  MK    +P V T N L+ ALC  +++    ++L +M + G CP+
Sbjct: 156 LLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPD 215

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR-----YEKAR 462
            ++Y+ ++ +       EVGL+   +   +   P + ++  +I G+C        +E  R
Sbjct: 216 AVSYTTVISSM-----CEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMR 270

Query: 463 TLNE-----HVLSF--------NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
            + E     +V+S+        NSG  QIE  ++ L  M+ R     G  P +  +S ++
Sbjct: 271 EMVEKGISPNVISYSTLINVLCNSG--QIELAFSFLTQMLKR-----GCHPNIYTLSSLV 323

Query: 510 -GCL--QLPYNA-DIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAAS 563
            GC      ++A D+  +++   G+  + +  +   +L+ GF  +    +A S+      
Sbjct: 324 KGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYN---TLVQGFCSHGNIVKAVSVFSHMEE 380

Query: 564 FGIVP 568
            G  P
Sbjct: 381 IGCSP 385



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 107/263 (40%), Gaps = 12/263 (4%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +Y  LI    ++G +   + +   M   G      VY      +C+  K  KEA 
Sbjct: 384 SPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSK-FKEAE 442

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITT 136
              +++      P++ TFN  +     +   + A +V R + Q+     +   Y  L+  
Sbjct: 443 SLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDG 502

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
            AK+ +++  + +  E+   G+E +  TY  L+ G   AG    A    G M      PD
Sbjct: 503 LAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPD 562

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRARE 255
            +  N +I A  + G  +RA  +L  ++       PD I+    +   C +  + D    
Sbjct: 563 EITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVIL 622

Query: 256 VYKMIHKYNIKGTPEVYTIAINC 278
           + +MI    I  +   +++ INC
Sbjct: 623 LERMISA-GIVPSIATWSVLINC 644


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 182/390 (46%), Gaps = 5/390 (1%)

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + F +L   P L   N ++     ++    A+++   +   GL      Y TLI  C   
Sbjct: 140 YVFRRLRTLPALPACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNTLINACRFQ 199

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G V    EV+ +MV   I+PNV TY  +I    + G +  A   +  M+   ++P++  +
Sbjct: 200 GTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTY 259

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N L++   Q   V+ A  +  E+      ++P+ +    L+     A +   A+ ++  +
Sbjct: 260 NVLMSGHCQRDDVNSAVVLYQELLKS--GLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEM 317

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            ++ +  T  VY   ++   ++G+ + A ++Y +MT+ G+ PDE   S ++      G++
Sbjct: 318 PRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQM 377

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             A   LQ  +  G+++   +Y++L+       N ++AL     M  + ++P V + ++L
Sbjct: 378 HVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSL 437

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I       ++   M + ++M + G+ PN +TY+ L+    +   ++    L  +  E+G+
Sbjct: 438 IDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGI 497

Query: 441 IPNLVMFKCII-GMC--SRRYEKARTLNEH 467
            PN +    ++ G+C  +R  E  R + E+
Sbjct: 498 SPNAITVSVLVDGLCRENRVQEAVRFVMEY 527



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 201/449 (44%), Gaps = 31/449 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP---NP 90
           L++  R     +L ++M R+GL+     Y+    N C+ Q  + +A   + ++V    +P
Sbjct: 161 LVKARRPGCAWELFDEMLRRGLVPSVVTYNT-LINACRFQGTVAKAQEVWDQMVAQQIDP 219

Query: 91  TLSTFN-MLMSVCASS--KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            + T+  M+ ++C      D+E  F  ++   EAG++ +   Y  L++   +   V++  
Sbjct: 220 NVVTYTTMICALCEEGCIGDAERLFDAMK---EAGMQPNQYTYNVLMSGHCQRDDVNSAV 276

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            ++ E++ +G+ PN   +  LIDG  KA + ++A G +  M    V P   V+N+L+   
Sbjct: 277 VLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGA 336

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +SG    A  +  EM      + PD  T   +++   + GQ+  A    + + +  +  
Sbjct: 337 FRSGNAQEALALYQEMTR--LGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNL 394

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   I+   + G+ E A +    MT+ G+ P+ V  S+LID     GK++ A  I 
Sbjct: 395 NAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMAIY 454

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E   +GI   +++Y++L+   +       A  L++ M    + P   T++ L+  LC  
Sbjct: 455 TEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLCRE 514

Query: 388 DQLPKTMEVL--------SDMKSL---------GLCPNTITYSILLVACERKDDVEVGLM 430
           +++ + +  +        SD+ S+          L PN++ Y  L+              
Sbjct: 515 NRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGK 574

Query: 431 LLSQAKEDGVIPNLVMFKCII-GMCSRRY 458
           L S  ++ G+IP+   +  +I G C   Y
Sbjct: 575 LFSYMRKSGMIPDSFTYTLLIRGQCMLGY 603



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 186/421 (44%), Gaps = 40/421 (9%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+   ++ G +D    VF  +      P +    A++DG  KA +   A+  +  M  + 
Sbjct: 125 LVIALSQMGLLDEALYVFRRLRTL---PALPACNAVLDGLVKARRPGCAWELFDEMLRRG 181

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + P  V +N LI AC   G V +A +V  +M A+   +DP+ +T   ++ A    G +  
Sbjct: 182 LVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQ--QIDPNVVTYTTMICALCEEGCIGD 239

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A  ++  + +  ++     Y + ++   Q  D   A  +Y ++ K G+ P+ V  + LID
Sbjct: 240 AERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLID 299

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               A +   A  +  E    G++  +  Y+SLM     + N Q+AL LY+ M  + L P
Sbjct: 300 GFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCP 359

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T + ++  LCDG Q+      L  ++  G+  N   Y+ L+    R  ++E  L   
Sbjct: 360 DEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATC 419

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492
           ++  E G+ PN+V +  +I   S+R                G+ QI       A+ +Y E
Sbjct: 420 TRMTEVGIEPNVVSYSSLIDGHSKR----------------GKMQI-------AMAIYTE 456

Query: 493 AIVAGTIPTVEVVSKVL------GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDG 546
            +  G  P V   + ++      G +   +   + + ++EN G+S +A+  S    L+DG
Sbjct: 457 MVAKGIEPNVVTYTALIHGHAKNGGIDAAFR--LHKEMIEN-GISPNAITVS---VLVDG 510

Query: 547 F 547
            
Sbjct: 511 L 511



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 143/340 (42%), Gaps = 29/340 (8%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
           R SE   +  +M R G+     VY++      +S  A +EA   ++ +    L       
Sbjct: 306 RFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNA-QEALALYQEMTRLGLCPDEFTC 364

Query: 100 SVCASSKDSEGAFQV----LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           S+        G   V    L+ VQE G+  +   Y  LI    + G ++        M  
Sbjct: 365 SIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTE 424

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            GIEPNV +Y +LIDG +K G++  A   Y  M +K ++P+ V + ALI    ++G +D 
Sbjct: 425 VGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDA 484

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           AF +  EM    + + P+ IT+  L+         +R +E  + + +Y+     +++   
Sbjct: 485 AFRLHKEMIE--NGISPNAITVSVLVDGLCRE---NRVQEAVRFVMEYSGLKCSDIH--- 536

Query: 276 INCCSQTGDWEFACSVYDDMT--KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
                         SV+ + T  ++ +IP+ V    LI      G+   A ++    +  
Sbjct: 537 --------------SVFSNFTIEEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKS 582

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
           G+     +Y+ L+           A+ LY  M  I +KPT
Sbjct: 583 GMIPDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKPT 622


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 168/385 (43%), Gaps = 8/385 (2%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           +L+ F ++    A   D + + ++ + +Q +   K +  +YT +IT   + G +D   EV
Sbjct: 99  SLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREV 158

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM + G+   V+ Y A+I+   + GQ   +      M+ + V P  + +N +I AC +
Sbjct: 159 FDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACAR 218

Query: 210 SGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G   +    + AEM  E   + PD IT   L+ ACA+ G  D A  V++ +++  I   
Sbjct: 219 GGLDWEGLLGLFAEMRHE--GIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPD 276

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+  +    +    E    +  +M   G +PD    + L++     G ++ A ++ +
Sbjct: 277 INTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFR 336

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + +  G      +YS L+        +    +++  MK     P   T N LI    +G 
Sbjct: 337 QMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGG 396

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              + + +  DM    + PN  TY  L+ AC +    E    +L    E G++P+   + 
Sbjct: 397 YFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYT 456

Query: 449 CIIGMCSRRYEKARTLNEHVLSFNS 473
            +I      + +A    E ++ FN+
Sbjct: 457 GVI----EAFGQAALYEEALVVFNT 477



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 186/436 (42%), Gaps = 13/436 (2%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H Y  +I    R+G + +C ++ ++M   G+     VY A   N          +     
Sbjct: 137 HIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTA-VINAYGRNGQFHASLELLN 195

Query: 86  LVP----NPTLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +     +P++ T+N +++ CA    D EG   +   ++  G++ D   Y TL+  CA  
Sbjct: 196 GMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHR 255

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G  D    VF  M  +GI P+++TY  L+    K  ++ K       M S    PD   +
Sbjct: 256 GLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMESGGNLPDITSY 315

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N L+ A  + G++  A DV  +M A       +  T   L+      G+ D  R+++  +
Sbjct: 316 NVLLEAYAELGSIKEAMDVFRQMQAA--GCVANAATYSVLLNLYGKHGRYDDVRDIFLEM 373

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
              N       Y I I    + G ++   +++ DM ++ V P+      LI   G  G  
Sbjct: 374 KVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLY 433

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E A +IL     +GI     +Y+ ++ A   A  +++AL ++  M  +   PTV T N+ 
Sbjct: 434 EDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSF 493

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I A   G    +   +LS M   GL  +  +++ ++ A  +    E  +    + ++   
Sbjct: 494 IHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANC 553

Query: 441 IPNLVMFKCIIGM-CS 455
            PN +  + ++ + CS
Sbjct: 554 EPNELTLEVVLSVYCS 569



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 155/369 (42%), Gaps = 37/369 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L+  CA     + A  V R + E+G+  D   Y+ L+ T  K  +++ + E+
Sbjct: 240 PDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSEL 299

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM + G  P++ +Y  L++  A+ G + +A   +  M++     +   ++ L+   G+
Sbjct: 300 LREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGK 359

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  D   D+  EM  +V   DPD  T   L++     G       ++  + + N++   
Sbjct: 360 HGRYDDVRDIFLEM--KVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNM 417

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF----- 324
           E Y   I  C + G +E A  +   M +KG++P     + +I+  G A   E A      
Sbjct: 418 ETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNT 477

Query: 325 ------------------------------EILQEAKNQGISVGIISYSSLMGACSNAKN 354
                                          IL      G+   + S++ ++ A      
Sbjct: 478 MNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQ 537

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           +++A++ Y  M+    +P   T+  +++  C    + ++ E   ++K+ G+ P+ + Y +
Sbjct: 538 YEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCL 597

Query: 415 LLVACERKD 423
           +L    + D
Sbjct: 598 MLALYAKND 606



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 114/295 (38%), Gaps = 42/295 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  L+  C      E A ++L  + E G+    K YT +I    ++   +    V
Sbjct: 415 PNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVV 474

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+ M   G  P V TY + I   A+ G   +A      M    +K D   FN +I A  Q
Sbjct: 475 FNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQ 534

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK------- 262
            G  + A     EM  E    +P+ +T+  ++    +AG VD + E ++ I         
Sbjct: 535 GGQYEEAVKSYVEM--EKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSV 592

Query: 263 -------------------YNIKGTPEVYTIAINCCSQ------TGD------WEFACSV 291
                              YN+    E+ T+ ++   Q       GD      W+    V
Sbjct: 593 MCYCLMLALYAKNDRLNDAYNL--IDEMITMRVSDIHQGIGQMIKGDFDDESNWQIVEYV 650

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
           +D +  +G      F +AL++      + E A  +L EA  +G+   +   S L+
Sbjct: 651 FDKLNSEGCGLGMRFYNALLEALWWMFQRERAARVLNEASKRGLFPELFRKSKLV 705


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 167/362 (46%), Gaps = 6/362 (1%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G K +   Y  +I +  K+G V    E+  +M+  G+EP+      ++DG  KA  + +A
Sbjct: 44  GSKPNAYTYKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEA 103

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +  M+S     D   +  LI + G+    + A  +  EM  E     P       ++
Sbjct: 104 CKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEM--EERGCTPSAPAYTNVI 161

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKG 299
                AG+++ A  V K +   N+   P+ YT+   I   S+TG  E AC +++ M K G
Sbjct: 162 DIYCKAGRIESAMVVLKKMLDKNL--APDDYTLNSLITAVSRTGRTELACEIFERMKKSG 219

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           V  + V  +A++D  G AGKV  A++ + E + +GI    I++++L+     AK   +A 
Sbjct: 220 VAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAY 279

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           ++ + M+S  L P V T   +I A      + K  E+  DM+  G   N +TY++L+ A 
Sbjct: 280 KVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDAL 339

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIE 479
            +    +    +    K+ G++P+ +    +  +  +      +L+E+    +   P +E
Sbjct: 340 VKAGRYQDARDIYFDMKKKGILPDAITATVLQQLAGKCKLSGISLDENEQRPSPSSPVLE 399

Query: 480 NK 481
            K
Sbjct: 400 KK 401



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 160/353 (45%), Gaps = 4/353 (1%)

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
           +L  +Q+   +    +   +I    +S ++  + + F E+   G +PN +TY  +I    
Sbjct: 1   MLAAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLV 60

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           KAG V  A      M    ++PD ++ N ++   G++  +D A  + A M +   P   D
Sbjct: 61  KAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPA--D 118

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T   L+++     + + A  ++  + +     +   YT  I+   + G  E A  V  
Sbjct: 119 DYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLK 178

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M  K + PD+  L++LI      G+ E A EI +  K  G++V  +S+++++  C  A 
Sbjct: 179 KMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAG 238

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
               A +  + M++  +KP   T N LI  L       +  +VL +M+S GL P+  TY+
Sbjct: 239 KVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYT 298

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
            ++ A  +  ++     +    ++ G   N+V +  +I    +  RY+ AR +
Sbjct: 299 CMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDI 351



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 114/227 (50%), Gaps = 2/227 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P+   +  ++ +   +   E A  VL+ + +  L  D     +LIT  +++G+ +   E
Sbjct: 151 TPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACE 210

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  M  +G+  N  ++ A++D C KAG+V  A+     M ++ +KP+ + FN LI   G
Sbjct: 211 IFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLG 270

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++     A+ VL EM +    + PD  T   +++A A AG + +A E++  + K      
Sbjct: 271 RAKYASEAYKVLQEMRS--AGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSAN 328

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
              Y + I+   + G ++ A  +Y DM KKG++PD +  + L   AG
Sbjct: 329 VVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVLQQLAG 375



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 144/308 (46%), Gaps = 13/308 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVPNPT 91
           L++ G +   ++LL+ M + GL + D +      +       + EA + F   K +  P 
Sbjct: 59  LVKAGNVVLAMELLDKMIKTGL-EPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGCPA 117

Query: 92  LS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T+ +L+      K  E A  +   ++E G       YT +I    K+G++++   V 
Sbjct: 118 DDYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVL 177

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M++  + P+ +T  +LI   ++ G+   A   +  M+   V  + V FNA++  CG++
Sbjct: 178 KKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKA 237

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TP 269
           G V  A+  + EM  E   + P+ IT   L+      G+   A E YK++ +    G TP
Sbjct: 238 GKVGLAYQFMDEM--EARGIKPNSITFNTLINCL---GRAKYASEAYKVLQEMRSAGLTP 292

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +V  YT  I   ++ G+   A  ++ DM K G   + V  + LID    AG+ + A +I 
Sbjct: 293 DVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIY 352

Query: 328 QEAKNQGI 335
            + K +GI
Sbjct: 353 FDMKKKGI 360



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 12/193 (6%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++ N LI    R GR     ++ E M++ G+  ++ V      + C     +  A++F  
Sbjct: 190 YTLNSLITAVSRTGRTELACEIFERMKKSGVA-VNTVSFNAMLDCCGKAGKVGLAYQFMD 248

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P   TFN L++    +K +  A++VL+ ++ AGL  D   YT +I   AK+G
Sbjct: 249 EMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAG 308

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV--- 198
            +   FE+F +M  AG   NV TY  LID   KAG+   A   Y  M+ K + PD +   
Sbjct: 309 NMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITAT 368

Query: 199 VFNALITACGQSG 211
           V   L   C  SG
Sbjct: 369 VLQQLAGKCKLSG 381


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 158/341 (46%), Gaps = 10/341 (2%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MFE 148
           T+  FN +M V A S   + A Q+L  + + G+  D   + TLI   +KSG + A    +
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-- 206
           +  E+  +G+ P+V TY  LI  C+++  +  A   +  M +   +PD   +NA+++   
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHG 339

Query: 207 -CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
            CG++   +R F  L E         PD +T  +L+ A A  G VD+     + + K   
Sbjct: 340 RCGKAEEAERLFGELVEKG-----FMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGF 394

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     Y   I+   + G  + A  +YD+M   G  PD V  + +ID  G   K+  A +
Sbjct: 395 KKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGK 454

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L++  + G+   ++++S+L+ A +       A + ++ M +  +KP       ++    
Sbjct: 455 VLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFA 514

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              +  K + +   M +    P+   Y +LLVA  ++D  E
Sbjct: 515 RSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCE 555



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 146/315 (46%), Gaps = 2/315 (0%)

Query: 141  GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            G++D ++ V  E+ +   + +  T   ++D  AKAG V +    Y  M++    P+  ++
Sbjct: 829  GRLDELYVVVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLY 888

Query: 201  NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
             ++ +             ++AEM  E     PD     +L+     AG  DR  +VY+ I
Sbjct: 889  RSMTSLLCHHNRFRDVELMIAEM--EGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSI 946

Query: 261  HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             +  ++   + Y   I    ++   E   ++ ++M K+G+ P      +L+  +  A   
Sbjct: 947  LEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELR 1006

Query: 321  EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            E A ++ +E +++   +    Y  +M    NA N  KA  L   MK   ++PT++TM+ L
Sbjct: 1007 EQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHIL 1066

Query: 381  ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
            +T+     Q  +   VL+ +KS  L  +T+ YS +  A  +  D ++G+  L + K DGV
Sbjct: 1067 MTSYGTAGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGV 1126

Query: 441  IPNLVMFKCIIGMCS 455
             P+  ++ C I   S
Sbjct: 1127 EPDHQVWTCFIRAAS 1141



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 147/340 (43%), Gaps = 16/340 (4%)

Query: 23  HD--VSEQLHSYNRLIRQGRISECI------DLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           HD  +   L S+N LI     S C+      DLL ++ + GL   D + +    + C   
Sbjct: 248 HDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRP-DVITYNTLISACSQS 306

Query: 75  KAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
             +++A   F+ +      P L T+N ++SV      +E A ++   + E G   D   Y
Sbjct: 307 SNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTY 366

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            +L+   AK G VD +     E+V AG + N  TY  +I    K G++  A G Y  MR+
Sbjct: 367 NSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRA 426

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
               PD V +  +I + G+   +  A  VL +M      + P  +   AL+ A A  G+ 
Sbjct: 427 VGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADA--GLKPTLVAFSALICAYAKGGRR 484

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
             A + +  +    +K     Y + ++  +++G+ E    +Y  M      PD+     L
Sbjct: 485 ADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVL 544

Query: 311 IDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGAC 349
           +       K E   EI+Q+ +    +S+G+IS   +   C
Sbjct: 545 LVALAKEDKCEEIEEIIQDMELLCQMSLGVISTILIKARC 584



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 120/251 (47%), Gaps = 2/251 (0%)

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             P LS FN L+++  ++ + +   QV + + EAGL+ D   Y TLI    +S + +  F 
Sbjct: 917  KPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFT 976

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            + +EM   G+ P + +Y +L+   AKA    +A   +  MRSK+ + +R +++ ++    
Sbjct: 977  LLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYR 1036

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             +G   +A ++LA M  +   ++P   T+  LM +   AGQ   A  V   +   +++ +
Sbjct: 1037 NAGNHSKAENLLAVMKED--GIEPTIATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVS 1094

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
               Y+   +   + GD++       +M + GV PD    +  I  A    +   A  +L+
Sbjct: 1095 TLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAILLLK 1154

Query: 329  EAKNQGISVGI 339
              ++ G  + I
Sbjct: 1155 SLQDCGFDLPI 1165



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 122/272 (44%), Gaps = 7/272 (2%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG--QVDRAREV 256
           VFNA++    +SG  D A  +L  M+     +DPD ++   L+ A + +G      A ++
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDTMHD--RGIDPDLVSFNTLINARSKSGCLAAGVALDL 280

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
              + +  ++     Y   I+ CSQ+ + E A +V+++M      PD    +A++   G 
Sbjct: 281 LFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGR 340

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            GK E A  +  E   +G     ++Y+SL+ A +   N  K     E +     K    T
Sbjct: 341 CGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEIT 400

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            N +I       +L   + +  +M+++G  P+ +TY++++ +  + D +     +L    
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMA 460

Query: 437 EDGVIPNLVMFK---CIIGMCSRRYEKARTLN 465
           + G+ P LV F    C      RR +  +T +
Sbjct: 461 DAGLKPTLVAFSALICAYAKGGRRADAEKTFD 492



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 113/552 (20%), Positives = 224/552 (40%), Gaps = 44/552 (7%)

Query: 21   YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI--- 77
            Y  D        N  +   +  E + LLE +        D +       +C+ Q +I   
Sbjct: 600  YKPDAKSLWSIMNAYVMTEKHEEGLSLLECIRDHVSSSQDLISECSIILLCRKQTSISAY 659

Query: 78   -KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             + + R     P    + +  L++    ++    A QV   +Q  G++A   +Y ++I+T
Sbjct: 660  EQYSQRLMLKYPGQNCNLYEHLITCLVEAELFSEACQVFCDMQFIGIEASKNIYESIIST 719

Query: 137  CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI---DGCAKAGQVAKAFGAYGIMRSKNV 193
              K G  +    +  + + +GI  N+ +   +I    G  K  Q A+     G+ ++  +
Sbjct: 720  YCKLGFPETAHGLMDDALQSGIPLNILSCRVIIIEAYGNIKLWQQAEIL-VKGLRQASGI 778

Query: 194  KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
              DR ++NALI A  +SG  ++A  V   M  +  P+ P   ++  +M+A    G++D  
Sbjct: 779  --DRRIWNALIHAYAESGLYEKARAVFDNM-IKTGPL-PTVDSVNGMMRALIVDGRLDEL 834

Query: 254  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
              V   +   + K +     + ++  ++ GD      +Y+ M   G +P+     ++   
Sbjct: 835  YVVVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSL 894

Query: 314  AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              H  +      ++ E +  G    +  ++SL+   + A N+ +  ++Y+ +    L+P 
Sbjct: 895  LCHHNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPD 954

Query: 374  VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
              T N LI   C   +  +   +L++M   GL P   +Y  LL A  + +  E    L  
Sbjct: 955  EDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFE 1014

Query: 434  QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF--NSG-RPQIENKWTSLALMVY 490
            +                  M S+ Y+  R++   ++    N+G   + EN      L V 
Sbjct: 1015 E------------------MRSKSYQLNRSIYHMMMKIYRNAGNHSKAEN-----LLAVM 1051

Query: 491  REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--- 547
            +E  +  TI T+ ++    G    P+ A   E ++ +L  S+  +      ++ D +   
Sbjct: 1052 KEDGIEPTIATMHILMTSYGTAGQPHEA---ENVLNSLKSSSLEVSTLPYSTVFDAYLKN 1108

Query: 548  GEYDPRAFSLLE 559
            G+YD     LLE
Sbjct: 1109 GDYDLGIKKLLE 1120



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 129/272 (47%), Gaps = 16/272 (5%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
           ++      PD V F  ++ A G+S    A+D AF+ LA   A      P    +  ++  
Sbjct: 147 VLDGARATPDEVAF--VVRAVGESSWRRALD-AFEWLARSTA------PASRAVAVVLGV 197

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
              A Q   A EV+  +       T +V+   +   +++G ++ A  + D M  +G+ PD
Sbjct: 198 LGRARQDSIAEEVF--LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPD 255

Query: 304 EVFLSALIDFAGHAGKVEA--AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
            V  + LI+    +G + A  A ++L E +  G+   +I+Y++L+ ACS + N + A+ +
Sbjct: 256 LVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTV 315

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           +E M + + +P + T NA+++      +  +   +  ++   G  P+ +TY+ LL A  +
Sbjct: 316 FEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAK 375

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           + +V+       +  + G   N + +  +I M
Sbjct: 376 EGNVDKVEHTCEELVKAGFKKNEITYNTMIHM 407



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/316 (19%), Positives = 133/316 (42%), Gaps = 9/316 (2%)

Query: 93   STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            ST  +++   A + D     ++   ++ AG   +  LY ++ +      +   +  +  E
Sbjct: 851  STVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAE 910

Query: 153  MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            M  AG +P++  + +L++    AG   +    Y  +    ++PD   +N LI    +S  
Sbjct: 911  MEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLR 970

Query: 213  VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
             +  F +L EM      + P   +  +L+ A A A   ++A ++++ +   + +    +Y
Sbjct: 971  PEEGFTLLNEMGK--RGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIY 1028

Query: 273  TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
             + +      G+   A ++   M + G+ P    +  L+   G AG+   A  +L   K+
Sbjct: 1029 HMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPHEAENVLNSLKS 1088

Query: 333  QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA--LCDGDQL 390
              + V  + YS++  A     ++   ++    MK   ++P        I A  LC+    
Sbjct: 1089 SSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVWTCFIRAASLCE---- 1144

Query: 391  PKTMEVLSDMKSLGLC 406
             +T + +  +KSL  C
Sbjct: 1145 -QTADAILLLKSLQDC 1159



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 91/208 (43%), Gaps = 9/208 (4%)

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           + TP+     +    ++  W  A   ++ + +    P    ++ ++   G A +   A E
Sbjct: 152 RATPDEVAFVVRAVGESS-WRRALDAFEWLAR-STAPASRAVAVVLGVLGRARQDSIAEE 209

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +      +G +V +  ++++MG  + +  +  A +L + M    + P + + N LI A  
Sbjct: 210 VFLRFAGEGATVQV--FNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARS 267

Query: 386 DGDQLPK--TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
               L     +++L +++  GL P+ ITY+ L+ AC +  ++E  + +  +       P+
Sbjct: 268 KSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPD 327

Query: 444 LVMFKCII---GMCSRRYEKARTLNEHV 468
           L  +  ++   G C +  E  R   E V
Sbjct: 328 LWTYNAMVSVHGRCGKAEEAERLFGELV 355


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 152/326 (46%), Gaps = 6/326 (1%)

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAF 182
           + D   YTTLI    K G+VDA F++F +MV AG   PN  TY AL+DG  K  ++  A 
Sbjct: 93  QPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAAR 152

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
                 R ++  PD V +N L+ A  Q G VD A     +M  E +   P  ++  A++ 
Sbjct: 153 AVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYV--PTLVSFNAIIT 210

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
               A ++  A EV+  +   +       Y++ I+   ++   + A  + D M  +G  P
Sbjct: 211 GLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRP 270

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D V  + L+     AG++++A  +L+   +QG    +++Y+ ++           A E++
Sbjct: 271 DLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIF 330

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
             + + K  P V T +ALI   C   ++ +  +V   M+ +   PN +TY+ ++      
Sbjct: 331 RELVANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREMACRPNVVTYNTMIWGLSMV 387

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFK 448
           D  E    +  +  E G +P+   ++
Sbjct: 388 DRNEEAYGMFREMSECGFVPDARTYR 413



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 173/402 (43%), Gaps = 17/402 (4%)

Query: 113 QVLRLVQE--AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           Q L+L +E    L A    Y  LI     +  +DA F +  EM   G++ N  T   ++ 
Sbjct: 9   QALQLFRENPCQLPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQ 68

Query: 171 GCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
           G  + G+VA+A   +   +   + +PD V +  LI    + G VD AFD+  +M A    
Sbjct: 69  GLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVA-AGG 127

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
             P+  T  AL+       ++D AR V     K +       Y   +    Q G  + A 
Sbjct: 128 CRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEAL 187

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
           + +  MT++G +P  V  +A+I     A ++  A E+  E  ++     +++YS ++   
Sbjct: 188 ATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGL 247

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
             +    +A +L + M S   +P +     L+       +L   + +L  M S G  P+ 
Sbjct: 248 CKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDV 307

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLNE 466
           +TY++++    +   V+    +  +   +   PN+V +  +IG     SR  E  + + E
Sbjct: 308 VTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMRE 367

Query: 467 -----HVLSFNS---GRPQIENKWTSLALMVYREAIVAGTIP 500
                +V+++N+   G   ++    +  +  +RE    G +P
Sbjct: 368 MACRPNVVTYNTMIWGLSMVDRNEEAYGM--FREMSECGFVP 407



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 150/384 (39%), Gaps = 52/384 (13%)

Query: 19  ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQK-- 75
           A+   DV       N L + GR+    DL   M   G    +   Y+A    +CK  +  
Sbjct: 90  AHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLD 149

Query: 76  ----AIKEAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
                I EA  R F     P + T+N LM+        + A      + E G       +
Sbjct: 150 AARAVITEARKRDFA----PDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSF 205

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             +IT   ++ ++    EVF+EM++    PN+ TY  +IDG  K+ Q+ +A      M S
Sbjct: 206 NAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVS 265

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           +  +PD V +  L+     +G +D A  +L  M ++     PD +T   ++      G+V
Sbjct: 266 EGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQ--GCIPDVVTYTVVIDKLCKVGRV 323

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
           D A E+++               +  N CS                     P+ V  SAL
Sbjct: 324 DDAHEIFR--------------ELVANKCS---------------------PNVVTYSAL 348

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           I     A +V+   ++++E         +++Y++++   S     ++A  ++  M     
Sbjct: 349 IGGYCRASRVDEGGKVMRE---MACRPNVVTYNTMIWGLSMVDRNEEAYGMFREMSECGF 405

Query: 371 KPTVSTMNALITALCDGDQLPKTM 394
            P   T   L  AL   DQ P  +
Sbjct: 406 VPDARTYRGLKRALRMIDQPPHVL 429


>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
 gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
 gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
          Length = 871

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 103/451 (22%), Positives = 204/451 (45%), Gaps = 44/451 (9%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF--------KLVP 88
           R+G++ E   L+E M  +GL      ++AR   +CK+ + + +A+R F        + +P
Sbjct: 224 REGQVDEAERLVERMRDEGLAPNVVTFNARISALCKAGRVL-DAYRIFNDMQEKWERGLP 282

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   TF++++S    +   + A  ++ +++  G     + Y   ++   ++G V    E
Sbjct: 283 RPDQVTFDVMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGMVGEAQE 342

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-C 207
           +  EM + G++PN +TY  ++DG  K G+          ++S  + PD V + +L+ A C
Sbjct: 343 LLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAYC 402

Query: 208 --GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
             G + A +R  D +A+         P+  T   L+++   AG++  A  + + + +   
Sbjct: 403 SEGNAAAANRILDEMAQKGCA-----PNSFTYNVLLQSLWKAGRITEAERLLERMSEKGY 457

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-----------------------VIP 302
                   I I+   +    + A  + D M  +G                        +P
Sbjct: 458 SLDTASCNIIIDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLP 517

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 361
           D +  S L+      G+ + A + L E   + IS   + Y + + G C + K    A+++
Sbjct: 518 DRITYSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKT-SLAVKV 576

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE 420
              M+    KP+  T N LI    +     + ++++S+MK  G+CPN +TY+ L+ + CE
Sbjct: 577 LRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCE 636

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           R   V   + LL +  ++ ++PN+  F+ +I
Sbjct: 637 R-GMVNKAMPLLDEMLQNEIVPNITSFELLI 666



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 134/587 (22%), Positives = 236/587 (40%), Gaps = 79/587 (13%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLD---MDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           YNRL+         DL+E + +  LL     D            +   ++ A R F  +P
Sbjct: 118 YNRLLLAALQEARFDLVESLYKDLLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAMP 177

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
                +F +L      +  S  A  VL  +    L     +  T++    + G+VD    
Sbjct: 178 ERNEFSFGILARGYCRAGRSMDALGVLDSMPTMNLV----VCNTVVAGFCREGQVDEAER 233

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN----VKPDRVVFNALI 204
           +   M + G+ PNV T+ A I    KAG+V  A+  +  M+ K      +PD+V F+ ++
Sbjct: 234 LVERMRDEGLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFDVML 293

Query: 205 TACGQSGAVDRAFDVLAEM---NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +   ++G VD A  VL ++      +  V+  +  +  L++     G V  A+E+ + + 
Sbjct: 294 SGFCEAGMVDEA-RVLVDIMRCGGFLRRVESYNRWLSGLVR----NGMVGEAQELLREMA 348

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKV 320
              ++     Y I ++   + G   F     +D  K GV+ PD V  ++L+      G  
Sbjct: 349 HEGVQPNSYTYNIIVDGLCKEGK-AFDVRKVEDFVKSGVMTPDVVTYTSLLHAYCSEGNA 407

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            AA  IL E   +G +    +Y+ L+ +   A    +A  L E M         ++ N +
Sbjct: 408 AAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCNII 467

Query: 381 ITALCDGDQLPKTMEVLSDM---KSLGL--------------------CPNTITYSILLV 417
           I  LC  ++L   M+++  M    SL L                     P+ ITYS L+ 
Sbjct: 468 IDGLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVS 527

Query: 418 A-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGR 475
           A C+     E    LL    +D + P+ V++   I G C                     
Sbjct: 528 ALCKEGRFDEAKKKLLEMIGKD-ISPDSVLYDTFIHGYC--------------------- 565

Query: 476 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSA 532
              ++  TSLA+ V R+    G  P+    + ++   +  +N+D   +L+  +   G+  
Sbjct: 566 ---KHGKTSLAVKVLRDMEKKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGKGICP 622

Query: 533 DALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCVSFKEIPV 577
           + +  +   SLI  F E     +A  LL+E     IVP ++  E+ +
Sbjct: 623 NVMTYN---SLIKSFCERGMVNKAMPLLDEMLQNEIVPNITSFELLI 666



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/367 (21%), Positives = 149/367 (40%), Gaps = 52/367 (14%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT------------------------ 164
           +Y  L+    +  + D +  ++ +++ +G  P+V T                        
Sbjct: 117 VYNRLLLAALQEARFDLVESLYKDLLLSGAAPDVFTRNILLQALCAAGRMELARRVFDAM 176

Query: 165 -------YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
                  +G L  G  +AG+   A G    M + N+    VV N ++    + G VD A 
Sbjct: 177 PERNEFSFGILARGYCRAGRSMDALGVLDSMPTMNL----VVCNTVVAGFCREGQVDEAE 232

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE----VYT 273
            ++  M  E   + P+ +T  A + A   AG+V  A  ++  + +   +G P      + 
Sbjct: 233 RLVERMRDE--GLAPNVVTFNARISALCKAGRVLDAYRIFNDMQEKWERGLPRPDQVTFD 290

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVEAAFEILQE 329
           + ++   + G  + A  + D M   G +        +LS L+      G V  A E+L+E
Sbjct: 291 VMLSGFCEAGMVDEARVLVDIMRCGGFLRRVESYNRWLSGLV----RNGMVGEAQELLRE 346

Query: 330 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             ++G+     +Y+ ++ G C   K +    ++ + +KS  + P V T  +L+ A C   
Sbjct: 347 MAHEGVQPNSYTYNIIVDGLCKEGKAFD-VRKVEDFVKSGVMTPDVVTYTSLLHAYCSEG 405

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
                  +L +M   G  PN+ TY++LL +  +   +     LL +  E G   +     
Sbjct: 406 NAAAANRILDEMAQKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLDTASCN 465

Query: 449 CII-GMC 454
            II G+C
Sbjct: 466 IIIDGLC 472



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 92/222 (41%), Gaps = 6/222 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y+TL++   K G+ D   +   EM+   I P+   Y   I G  K G+ + A      M 
Sbjct: 522 YSTLVSALCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDME 581

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            K  KP    +N LI    +    D    +++EM  +   + P+ +T  +L+K+    G 
Sbjct: 582 KKGCKPSTRTYNLLIWGFREKHNSDEILKLISEMKGK--GICPNVMTYNSLIKSFCERGM 639

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD-DMTKKGVIPDEVFLS 308
           V++A  +   + +  I      + + I    +T D+  A  V+D  ++  G    EV  S
Sbjct: 640 VNKAMPLLDEMLQNEIVPNITSFELLIKAFCKTSDFSAAQRVFDASLSTCG--QKEVLYS 697

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GAC 349
            +       G+   A  IL+      IS+    Y  ++ G C
Sbjct: 698 LMCTQLSTYGRWLEAMNILETVLELRISIHRFPYKQIIEGLC 739



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 18/178 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L ++GR  E    L +M  K +     +Y       CK  K   A+K      K    P+
Sbjct: 529 LCKEGRFDEAKKKLLEMIGKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPS 588

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+N+L+       +S+   +++  ++  G+  +   Y +LI +  + G V+    +  
Sbjct: 589 TRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERGMVNKAMPLLD 648

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           EM+   I PN+ ++  LI    K    + A               + VF+A ++ CGQ
Sbjct: 649 EMLQNEIVPNITSFELLIKAFCKTSDFSAA---------------QRVFDASLSTCGQ 691


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 2/309 (0%)

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           ++ A ++LR +    ++ D  +Y T+I    K   V+  F+ + EMV   I P V TY  
Sbjct: 190 TKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNT 249

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           LI G    GQ+  A G    M  +N+ P    F+ L+ A  + G V  A +V   M  + 
Sbjct: 250 LICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKK- 308

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             V P+ +T  +LM       +V++A  ++  + +  +      Y+I I+   +    + 
Sbjct: 309 -DVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDE 367

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  ++++M  K + PD V  ++LID    +G++  A +++ E  ++G    II+Y+SL+ 
Sbjct: 368 AMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLD 427

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
           A     +  KA+EL   +K   ++P+V T N LI  LC   +L    +V  D+   G   
Sbjct: 428 ALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNI 487

Query: 408 NTITYSILL 416
           +  TY+ ++
Sbjct: 488 DVYTYNTMI 496



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 184/381 (48%), Gaps = 6/381 (1%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L T ++L++  +    +  +F V   + + G + D    TTLI      G +        
Sbjct: 104 LVTLSILINCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHD 163

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +++  G + N  +Y  LI+G  K GQ   A      +  K V+ D V++N +I    +  
Sbjct: 164 KVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDK 223

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPE 270
            V+ AFD  +EM A+   + P  +T   L+      GQ+ D    ++KMI + NI  T  
Sbjct: 224 LVNDAFDFYSEMVAK--RICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILE-NINPTVY 280

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            ++I ++   + G  + A +V+  M KK V P+ V  ++L++      +V  A  I    
Sbjct: 281 TFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTM 340

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
              G++  + SYS ++      K   +A++L+E M   ++ P V T N+LI  LC   ++
Sbjct: 341 AQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRI 400

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
              ++++ +M   G  PN ITY+ LL A  +   V+  + LL++ K+  + P++  +  +
Sbjct: 401 SYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNIL 460

Query: 451 I-GMC-SRRYEKARTLNEHVL 469
           I G+C S R + A+ + E VL
Sbjct: 461 INGLCKSGRLKDAQKVFEDVL 481



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 122/253 (48%), Gaps = 17/253 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G++ + I LL  M  + +      +       CK  K +KEA   F +
Sbjct: 246 TYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGK-VKEAKNVFVV 304

Query: 87  V----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N LM+      +   A  +   + + G+  D   Y+ +I+   K   
Sbjct: 305 MMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKM 364

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD   ++F EM    I P+V TY +LIDG  K+G+++ A    G M  +   P+ + +N+
Sbjct: 365 VDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNS 424

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK--MI 260
           L+ A  ++  VD+A ++L ++    H + P   T   L+     +G++  A++V++  ++
Sbjct: 425 LLDALCKNHHVDKAIELLTKLKD--HNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLV 482

Query: 261 HKYNIKGTPEVYT 273
           + YNI    +VYT
Sbjct: 483 NGYNI----DVYT 491



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 40/276 (14%)

Query: 218 DVLAEMNAEVHPVDPDH--ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           ++++  N  +H  +P    I  G ++ +   A        +++ +    I       +I 
Sbjct: 51  NLVSSFNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSIL 110

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF---------AGH---------- 316
           INC SQ G    + SV+ ++ KKG  PD + L+ LI           A H          
Sbjct: 111 INCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGF 170

Query: 317 ----------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
                            G+ +AA E+L+    + + + ++ Y++++      K    A +
Sbjct: 171 QLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFD 230

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-C 419
            Y  M + ++ PTV T N LI  LC   QL   + +L  M    + P   T+SIL+ A C
Sbjct: 231 FYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFC 290

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +     E   + +   K+D V PN+V +  ++ G C
Sbjct: 291 KEGKVKEAKNVFVVMMKKD-VKPNIVTYNSLMNGYC 325



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 77/166 (46%), Gaps = 9/166 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  +HSY+ +I    +   + E + L E+M  K +      Y++    +CKS + I  A
Sbjct: 345 VAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGR-ISYA 403

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            +    + +    P + T+N L+     +   + A ++L  +++  ++     Y  LI  
Sbjct: 404 LKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILING 463

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
             KSG++    +VF +++  G   +V+TY  +I G  K G V   F
Sbjct: 464 LCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVIPQF 509



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 11/203 (5%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           DV   + +YN L+        +++   +   M + G+      Y       CK  K + E
Sbjct: 309 DVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKI-KMVDE 367

Query: 80  AFRFFKLVP----NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           A + F+ +      P + T+N L+  +C S + S  A +++  + + G   +   Y +L+
Sbjct: 368 AMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISY-ALKLIGEMHDRGQPPNIITYNSLL 426

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K+  VD   E+  ++ +  I+P+V TY  LI+G  K+G++  A   +  +      
Sbjct: 427 DALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYN 486

Query: 195 PDRVVFNALITACGQSGAVDRAF 217
            D   +N +I    + G V   F
Sbjct: 487 IDVYTYNTMIKGFCKKGFVIPQF 509


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 217/495 (43%), Gaps = 52/495 (10%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-- 75
           A  VS  L ++N+L+R    +G + EC  LL+ + ++G+L     Y+     +C+  +  
Sbjct: 209 ASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELD 268

Query: 76  -AIKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            A++      +  P P + T+N L+  +C +SK  E    + ++V E GL+ D   Y TL
Sbjct: 269 GAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNE-GLEPDSYTYNTL 327

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    K G V     +  + V  G  P+  TY +LIDG    G+  +A   +     K +
Sbjct: 328 IAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGI 387

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMN-----AEVHPVD----------------- 231
           KP+ +++N LI      G +  A  +  EM+      EV   +                 
Sbjct: 388 KPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADG 447

Query: 232 -----------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINC 278
                      PD  T   L+   +   +++ A E+  ++    +   P+VYT    +N 
Sbjct: 448 LVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVD--PDVYTYNSLLNG 505

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             +T  +E     Y  M +KG  P+    + L++      K++ A  +L+E KN+ ++  
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565

Query: 339 IISYSSLM-GACSNAKNWQKALELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
            +++ +L+ G C N  +   A  L+  M ++ K+  +  T N +I A  +   +    ++
Sbjct: 566 AVTFGTLIDGFCKNG-DLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKL 624

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC- 454
             +M    L P+  TY +++    +  +V +G   L +  E+G IP+L     +I  +C 
Sbjct: 625 FQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCV 684

Query: 455 -SRRYEKARTLNEHV 468
             R YE A  ++  V
Sbjct: 685 EDRVYEAAGIIHRMV 699



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 115/487 (23%), Positives = 198/487 (40%), Gaps = 60/487 (12%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQK 75
           K   + H +S       +L   G+     ++L DM E  G   ++ VY     N  +  K
Sbjct: 32  KEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGK 91

Query: 76  AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            ++EA   F+ +      PT+ ++N +MSV   S   + A +V   +++ G+  D   +T
Sbjct: 92  -VQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS- 190
             + +  K+ +  A   + + M + G E NV  Y  ++ G  +    A+ +  +G M + 
Sbjct: 151 IRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLAS 210

Query: 191 ----------------------------------KNVKPDRVVFNALITACGQSGAVDRA 216
                                             + V P+   +N  I    Q G +D A
Sbjct: 211 GVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGA 270

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY--KMIHKYNIKGTPEVYTI 274
             ++  +  E  P  PD IT   L+       +   A EVY  KM+++  ++     Y  
Sbjct: 271 VRMVGCL-IEQGP-KPDVITYNNLIYGLCKNSKFQEA-EVYLGKMVNE-GLEPDSYTYNT 326

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I    + G  + A  +  D    G +PD+    +LID   H G+   A  +  EA  +G
Sbjct: 327 LIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKG 386

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC------DGD 388
           I   +I Y++L+   SN     +A +L   M    L P V T N L+  LC      D D
Sbjct: 387 IKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDAD 446

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L K       M S G  P+  T++IL+     +  +E  L +L    ++GV P++  + 
Sbjct: 447 GLVKV------MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYN 500

Query: 449 CII-GMC 454
            ++ G+C
Sbjct: 501 SLLNGLC 507



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 167/398 (41%), Gaps = 35/398 (8%)

Query: 180 KAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
           KA   +  MR +   K     + ++I   G  G  +   +VL +M   V     + + +G
Sbjct: 22  KALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVG 81

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           A MK     G+V  A  V++ +  Y+ + T   Y   ++    +G ++ A  VY  M  +
Sbjct: 82  A-MKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDR 140

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ PD    +  +       +  AA  +L    +QG  + +++Y +++G         + 
Sbjct: 141 GITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEG 200

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            EL+  M +  +   +ST N L+  LC    + +  ++L  +   G+ PN  TY++ +  
Sbjct: 201 YELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQG 260

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSFNSGR 475
             ++ +++  + ++    E G  P+++ +  +I G+C  S+  E    L + V   N G 
Sbjct: 261 LCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMV---NEGL 317

Query: 476 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 535
                 + +L         +AG            G +QL       ER+V +   +    
Sbjct: 318 EPDSYTYNTL---------IAGYCKG--------GMVQLA------ERIVGDAVFNGFVP 354

Query: 536 KRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVPCV 570
            +    SLIDG    GE + RA +L  EA   GI P V
Sbjct: 355 DQFTYRSLIDGLCHEGETN-RALALFNEALGKGIKPNV 391


>gi|145524846|ref|XP_001448245.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415789|emb|CAK80848.1| unnamed protein product [Paramecium tetraurelia]
          Length = 967

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 189/419 (45%), Gaps = 26/419 (6%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAG 122
           ++F   +  KA K  F   KL    P   T+  L++   +S   D   AFQ+    ++  
Sbjct: 311 QYFKNNQKDKAWK-TFENLKLTSTKPDNFTYTTLINGLKNSDNMDLRLAFQLFEEYKQYN 369

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKA 181
            + D  +Y  L+  C  +G ++  F++ +EM  +  I+ +  TY  LI GC +  ++ +A
Sbjct: 370 -QPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQSIQLDEITYNTLIKGCGRKKRLNEA 428

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +  M+   +KP+R+ FN+L+ +C +   ++ A+    EM  + + + PD+ T   L+
Sbjct: 429 ISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMRKQ-YGIFPDNFTYSILV 487

Query: 242 KAC----ANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
                  +N  ++ RA  + + I +    K    +Y   I+ C +  + +    ++ +M 
Sbjct: 488 NGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMQLFKEMK 547

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            K + P  V    LI   G    +  AF + +E K + I +  ++Y  L+ AC       
Sbjct: 548 NKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCLVDACVRNDRLD 607

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLCPNTITYSIL 415
           +AL+  E MKS  L         +I   C  +Q  + M+  S MK +    PN ITY+ L
Sbjct: 608 QALQFIEQMKSQNLPINTVLYTTIIKGFCKLNQTEEAMKYFSLMKQNQRTYPNLITYNSL 667

Query: 416 LVACERKDDVEVGLM-----LLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHV 468
           L        V+ GLM     L  +  E  + P+L+ F  ++ G C R     + LNE V
Sbjct: 668 LDGL-----VKNGLMNQADKLFQELVESTIKPDLITFSTLLKGHCRRG--NMKRLNETV 719



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 158/333 (47%), Gaps = 11/333 (3%)

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIM 188
            T+I    K+ + D  ++ F  +     +P+  TY  LI+G   +    +  AF  +   
Sbjct: 306 NTMIDQYFKNNQKDKAWKTFENLKLTSTKPDNFTYTTLINGLKNSDNMDLRLAFQLFEEY 365

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           +  N +PD++++N L+ AC  +G ++R F +L EM  +   +  D IT   L+K C    
Sbjct: 366 KQYN-QPDQIIYNCLLDACINAGDLNRGFQLLNEM-KQSQSIQLDEITYNTLIKGCGRKK 423

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFL 307
           +++ A  +++ + +  IK     +   ++ C +      A   +++M K+ G+ PD    
Sbjct: 424 RLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMRKQYGIFPDNFTY 483

Query: 308 SALID--FAGHAGKVE--AAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELY 362
           S L++     H+ + E   A  +L++ +  G      I Y+SL+ AC      QK ++L+
Sbjct: 484 SILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMQLF 543

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           + MK+  ++P+  T   LI A    + L     +  +MK   +  N +TY  L+ AC R 
Sbjct: 544 KEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCLVDACVRN 603

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           D ++  L  + Q K   +  N V++  II G C
Sbjct: 604 DRLDQALQFIEQMKSQNLPINTVLYTTIIKGFC 636



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 170/372 (45%), Gaps = 13/372 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--F 147
           PT+ T N ++     +   + A++    ++    K D   YTTLI     S  +D    F
Sbjct: 300 PTIVTINTMIDQYFKNNQKDKAWKTFENLKLTSTKPDNFTYTTLINGLKNSDNMDLRLAF 359

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR-SKNVKPDRVVFNALITA 206
           ++F E      +P+   Y  L+D C  AG + + F     M+ S++++ D + +N LI  
Sbjct: 360 QLFEEYKQYN-QPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQSIQLDEITYNTLIKG 418

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVYKMIHKYNI 265
           CG+   ++ A  +  EM      + P+ I+  +L+ +C    +++ A R   +M  +Y I
Sbjct: 419 CGRKKRLNEAISLFEEMKQ--IGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMRKQYGI 476

Query: 266 KGTPEVYTIAINCC----SQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKV 320
                 Y+I +N      S   +   A ++ + + + G   PDE+  ++LID      ++
Sbjct: 477 FPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEI 536

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           +   ++ +E KN+ I    ++Y  L+ A     +   A  ++E MK  K+     T   L
Sbjct: 537 QKGMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCL 596

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG- 439
           + A    D+L + ++ +  MKS  L  NT+ Y+ ++    + +  E  +   S  K++  
Sbjct: 597 VDACVRNDRLDQALQFIEQMKSQNLPINTVLYTTIIKGFCKLNQTEEAMKYFSLMKQNQR 656

Query: 440 VIPNLVMFKCII 451
             PNL+ +  ++
Sbjct: 657 TYPNLITYNSLL 668



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 153/329 (46%), Gaps = 14/329 (4%)

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           NA I+P + T   +ID   K  Q  KA+  +  ++  + KPD   +  LI     S  +D
Sbjct: 295 NAKIQPTIVTINTMIDQYFKNNQKDKAWKTFENLKLTSTKPDNFTYTTLINGLKNSDNMD 354

Query: 215 R--AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEV 271
              AF +  E      P   D I    L+ AC NAG ++R  ++  +M    +I+     
Sbjct: 355 LRLAFQLFEEYKQYNQP---DQIIYNCLLDACINAGDLNRGFQLLNEMKQSQSIQLDEIT 411

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   I  C +      A S++++M + G+ P+ +  ++L+D      K+  A+   +E +
Sbjct: 412 YNTLIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMR 471

Query: 332 NQ-GISVGIISYSSLMGAC----SNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALC 385
            Q GI     +YS L+       SN     +A+ L E ++   + KP     N+LI A  
Sbjct: 472 KQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACV 531

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             +++ K M++  +MK+  + P+++TY IL+ A  + +D+     +  + K+  +  N V
Sbjct: 532 KFNEIQKGMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDV 591

Query: 446 MFKCIIGMCSR--RYEKARTLNEHVLSFN 472
            + C++  C R  R ++A    E + S N
Sbjct: 592 TYGCLVDACVRNDRLDQALQFIEQMKSQN 620



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/415 (19%), Positives = 172/415 (41%), Gaps = 45/415 (10%)

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTC 137
           + F  +K    P    +N L+  C ++ D    FQ+L  + Q   ++ D   Y TLI  C
Sbjct: 360 QLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQSIQLDEITYNTLIKGC 419

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPD 196
            +  +++    +F EM   GI+PN  ++ +L+D C K  ++  A+  +  MR +  + PD
Sbjct: 420 GRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMRKQYGIFPD 479

Query: 197 RVVFNALI----TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
              ++ L+    T       + RA  +L ++  E     PD I   +L+ AC    ++ +
Sbjct: 480 NFTYSILVNGIKTNHSNRDELLRAITLLEQI-QETGQFKPDEILYNSLIDACVKFNEIQK 538

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
             +++K +   +I+ +   Y I I    +  D   A  ++++M +K +  ++V    L+D
Sbjct: 539 GMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCLVD 598

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVG---------------------------------- 338
                 +++ A + +++ K+Q + +                                   
Sbjct: 599 ACVRNDRLDQALQFIEQMKSQNLPINTVLYTTIIKGFCKLNQTEEAMKYFSLMKQNQRTY 658

Query: 339 --IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
             +I+Y+SL+          +A +L++ +    +KP + T + L+   C    + +  E 
Sbjct: 659 PNLITYNSLLDGLVKNGLMNQADKLFQELVESTIKPDLITFSTLLKGHCRRGNMKRLNET 718

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  M    + P+     ++L +C  +     G+ +  Q +    IP       II
Sbjct: 719 VQTMLHYQINPDESLLQLILESCLNQQQYHNGVQIYDQFQHQ--IPQSTQLLLII 771



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 163/352 (46%), Gaps = 20/352 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+ R++E I L E+M++ G+   +++      + C     +  A+R+F+ 
Sbjct: 411 TYNTLIKGCGRKKRLNEAISLFEEMKQIGI-KPNRISFNSLLDSCVKCNKMNVAWRYFEE 469

Query: 87  VPN-----PTLSTFNMLMSVCASSKDSEG----AFQVLRLVQEAG-LKADCKLYTTLITT 136
           +       P   T+++L++   ++  +      A  +L  +QE G  K D  LY +LI  
Sbjct: 470 MRKQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDA 529

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
           C K  ++    ++F EM N  IEP+  TYG LI    K   +  AF  +  M+ K +  +
Sbjct: 530 CVKFNEIQKGMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPIN 589

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +  L+ AC ++  +D+A   + +M ++  P++   +    ++K      Q + A + 
Sbjct: 590 DVTYGCLVDACVRNDRLDQALQFIEQMKSQNLPINT--VLYTTIIKGFCKLNQTEEAMKY 647

Query: 257 YKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           + ++ K N +  P +  Y   ++   + G    A  ++ ++ +  + PD +  S L+   
Sbjct: 648 FSLM-KQNQRTYPNLITYNSLLDGLVKNGLMNQADKLFQELVESTIKPDLITFSTLLKGH 706

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
              G ++   E +Q   +  I+        ++ +C N + +   +++Y+  +
Sbjct: 707 CRRGNMKRLNETVQTMLHYQINPDESLLQLILESCLNQQQYHNGVQIYDQFQ 758


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 171/417 (41%), Gaps = 46/417 (11%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + EA R       P   T   L+   ++S  +  A +VL     A    D   Y  ++  
Sbjct: 83  LDEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVL-----AACGPDVMAYNAMMAG 137

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
              +G+VDA      E     +E + +T   LI G    G+ A A      M  +   PD
Sbjct: 138 YCGAGQVDAARRWCAER---AVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPD 194

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +  L+ A  +     +A  +L EM  +     PD +T   ++      G+VD A E 
Sbjct: 195 VVTYTILLEATCKRSGYKQAMKLLDEMRDK--GCTPDIVTYNVVVNGICQEGRVDDAIEF 252

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            K +  Y  +     Y I +        WE A  +  +M +KG  P+ V  + LI F   
Sbjct: 253 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 312

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G VE A E+L++    G S   +SY+ L+ A    K   KA+   + M S    P + +
Sbjct: 313 KGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 372

Query: 377 MNALITALC-------------------------------DG----DQLPKTMEVLSDMK 401
            N L+TALC                               DG     +  + +E+L++M 
Sbjct: 373 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 432

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
           S GL P+ ITYS +     R+D +E  +    + ++ G+ PN V++  II G+C RR
Sbjct: 433 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRR 489



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 159/327 (48%), Gaps = 4/327 (1%)

Query: 126 DCKLYTTLI-TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
           D   YT L+  TC +SG   AM ++  EM + G  P++ TY  +++G  + G+V  A   
Sbjct: 194 DVVTYTILLEATCKRSGYKQAM-KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF 252

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
              + S   +P+ V +N ++     +   + A +++ EM  +  P  P+ +T   L+   
Sbjct: 253 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP--PNVVTFNMLISFL 310

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
              G V+ A EV + I KY        Y   ++   +    + A +  D M  +G  PD 
Sbjct: 311 CRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDI 370

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
           V  + L+     +G+V+ A E+L + K++G +  +ISY++++   + A   ++ALEL   
Sbjct: 371 VSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNE 430

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           M S  L+P + T + +   LC  D++   +     ++ +G+ PNT+ Y+ +++   ++ +
Sbjct: 431 MVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRE 490

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII 451
               + L +    +G +PN   +  +I
Sbjct: 491 THSAIDLFAYMIGNGCMPNESTYTILI 517



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 139/314 (44%), Gaps = 22/314 (7%)

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKA---FGAYGIMRSKNVKPDRVVFNALITACG 208
            +V +   P+  T  ALI   + +G+ A+A     A G        PD + +NA++    
Sbjct: 88  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACG--------PDVMAYNAMMAGYC 139

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKG 267
            +G VD A    AE       V+ D  T   L++     G+   A  V  +M+ +   + 
Sbjct: 140 GAGQVDAARRWCAE-----RAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRR---RC 191

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P+V  YTI +    +   ++ A  + D+M  KG  PD V  + +++     G+V+ A E
Sbjct: 192 VPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIE 251

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            L+   + G     +SY+ ++     A+ W+ A EL   M      P V T N LI+ LC
Sbjct: 252 FLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLC 311

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               +   +EVL  +   G  PN+++Y+ LL A  ++  ++  +  L      G  P++V
Sbjct: 312 RKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIV 371

Query: 446 MFKCIIGMCSRRYE 459
            +  ++    R  E
Sbjct: 372 SYNTLLTALCRSGE 385



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 110/226 (48%), Gaps = 7/226 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R+G +   +++LE + + G       Y+      CK QK + +A  F  L+ +    P
Sbjct: 310 LCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCK-QKKMDKAMAFLDLMVSRGCYP 368

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + ++N L++    S + + A ++L  +++ G       Y T+I    K+GK     E+ 
Sbjct: 369 DIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELL 428

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           +EMV+ G++P++ TY  +  G  +  ++  A  A+G ++   ++P+ V++NA+I    + 
Sbjct: 429 NEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKR 488

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
                A D+ A M    +   P+  T   L++  A  G +  AR++
Sbjct: 489 RETHSAIDLFAYMIG--NGCMPNESTYTILIEGLAYEGLIKEARDL 532


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 157/356 (44%), Gaps = 2/356 (0%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           L P  +LS F+  +           A ++L  ++  G K D   Y  LI    K G++D 
Sbjct: 76  LFPCFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDE 135

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             +  + M + G +PNV T+  ++      G+   A      M  K   P  V FN LI 
Sbjct: 136 AIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILIN 195

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G + RA D+L +M   +H   P+ ++   L+       ++DRA E   ++     
Sbjct: 196 FLCRQGLLGRAIDILEKM--PMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGC 253

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 Y   +    + G  + A  + + ++ KG  P  +  + +ID     GK E A +
Sbjct: 254 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIK 313

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L E + +G+   II+YSSL+   S      +A++ +  ++ + ++P   T N+++  LC
Sbjct: 314 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 373

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
              Q  + ++ L+ M S    P   TY+IL+     +   +  L LL++    G++
Sbjct: 374 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLV 429



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 164/373 (43%), Gaps = 42/373 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           ++  + + + LL++M  KG       Y+     +CK  + + EA +F   +P+    P +
Sbjct: 94  KESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGR-LDEAIKFLNNMPSYGCQPNV 152

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T N+++    S+     A ++L  +   G       +  LI    + G +    ++  +
Sbjct: 153 ITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEK 212

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G  PN  +Y  L+ G  K  ++ +A     IM S+   PD V +N L+TA  + G 
Sbjct: 213 MPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGK 272

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           VD A ++L ++++                K C+             ++  YN        
Sbjct: 273 VDVAVEILNQLSS----------------KGCS------------PVLITYN-------- 296

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+  S+ G  E A  + D+M +KG+ PD +  S+L+      GKV+ A +   + + 
Sbjct: 297 -TVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEG 355

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            GI    I+Y+S+M     ++   +A++   +M S + KPT +T   LI  +       +
Sbjct: 356 LGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKE 415

Query: 393 TMEVLSDMKSLGL 405
            +++L+++ S GL
Sbjct: 416 ALDLLNELCSRGL 428



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 117/252 (46%), Gaps = 3/252 (1%)

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
           T C +SG V +A  +L EM  +     PD +T   L+      G++D A +    +  Y 
Sbjct: 91  TTCKESG-VGQAMKLLDEMRNKGS--KPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG 147

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            +     + I +     TG W  A  +  DM +KG  P  V  + LI+F    G +  A 
Sbjct: 148 CQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAI 207

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +IL++    G +   +SY+ L+      K   +A+E  + M S    P + T N L+TAL
Sbjct: 208 DILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTAL 267

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++   +E+L+ + S G  P  ITY+ ++    +    E  + LL + +  G+ P++
Sbjct: 268 CKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDI 327

Query: 445 VMFKCIIGMCSR 456
           + +  ++   SR
Sbjct: 328 ITYSSLVSGLSR 339



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 113/269 (42%), Gaps = 34/269 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L RQG +   ID+LE M   G       Y+      CK +K                 
Sbjct: 195 NFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKM---------------- 238

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
                           + A + L ++   G   D   Y TL+T   K GKVD   E+ ++
Sbjct: 239 ----------------DRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 282

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           + + G  P + TY  +IDG +K G+  +A      MR K +KPD + +++L++   + G 
Sbjct: 283 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 342

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           VD A     ++  E   + P+ IT  ++M     + Q DRA +    +     K T   Y
Sbjct: 343 VDEAIKFFHDL--EGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATY 400

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVI 301
           TI I   +  G  + A  + +++  +G++
Sbjct: 401 TILIEGIAYEGLAKEALDLLNELCSRGLV 429



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 138/295 (46%), Gaps = 11/295 (3%)

Query: 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
           C ++G V +A      MR+K  KPD V +N LI    + G +D A   L  M +  +   
Sbjct: 93  CKESG-VGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPS--YGCQ 149

Query: 232 PDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFA 288
           P+ IT   ++++ C+    +D  + +  M+ K     +P V T  I IN   + G    A
Sbjct: 150 PNVITHNIILRSMCSTGRWMDAEKLLSDMLRK---GCSPSVVTFNILINFLCRQGLLGRA 206

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             + + M   G  P+ +  + L+       K++ A E L    ++G    I++Y++L+ A
Sbjct: 207 IDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTA 266

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
                    A+E+   + S    P + T N +I  L    +  + +++L +M+  GL P+
Sbjct: 267 LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPD 326

Query: 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMC-SRRYEKA 461
            ITYS L+    R+  V+  +      +  G+ PN + +  I +G+C SR+ ++A
Sbjct: 327 IITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRA 381



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 7/208 (3%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--- 75
           H  +    SYN L+    ++ ++   I+ L+ M  +G       Y+     +CK  K   
Sbjct: 216 HGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDV 275

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A++   +      +P L T+N ++   +    +E A ++L  ++  GLK D   Y++L++
Sbjct: 276 AVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVS 335

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
             ++ GKVD   + FH++   GI PN  TY +++ G  K+ Q  +A      M SK  KP
Sbjct: 336 GLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKP 395

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEM 223
               +  LI      G    A D+L E+
Sbjct: 396 TEATYTILIEGIAYEGLAKEALDLLNEL 423



 Score = 42.4 bits (98), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 9/141 (6%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  L +YN +I    + G+    I LL++M RKGL   D + ++   +    +  + EA 
Sbjct: 289 SPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGL-KPDIITYSSLVSGLSREGKVDEAI 347

Query: 82  RFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           +FF     L   P   T+N +M     S+ ++ A   L  +     K     YT LI   
Sbjct: 348 KFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 407

Query: 138 AKSGKVDAMFEVFHEMVNAGI 158
           A  G      ++ +E+ + G+
Sbjct: 408 AYEGLAKEALDLLNELCSRGL 428


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 182/409 (44%), Gaps = 42/409 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----- 89
           L + G +++ +++ E M+ +  +     Y+    + C + +   +A   F+ +       
Sbjct: 20  LAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGE-FGKALDLFQSMKREKRVE 78

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T+N L+S   SS ++EGA ++L  +++  + A+   Y+++I +  K  K +  ++V
Sbjct: 79  PDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKV 138

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM+ AG  P+V  +  ++ G A++  + KA   Y  M     KPD V ++ LI    +
Sbjct: 139 LEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAK 198

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D +  +L+EM        P+ IT   L+      G++++A E              
Sbjct: 199 IGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALE-------------- 244

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
                                V+  M + G  P++   + LI     A KV  A E+ ++
Sbjct: 245 ---------------------VFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEK 283

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK-SIKLKPTVSTMNALITALCDGD 388
                I    ++Y+SL+       +  +A +LY  M     L+PT+ T N LI   C   
Sbjct: 284 MTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLG 343

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           +L +  E++++M + GL  +T TY IL+    R   ++  L +  Q +E
Sbjct: 344 KLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMRE 392



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 158/343 (46%), Gaps = 17/343 (4%)

Query: 124 KADCKL----YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           KA C +    Y  ++ + AK+G +    EVF  M +    P++ TY  LI+    AG+  
Sbjct: 3   KAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFG 62

Query: 180 KAFGAYGIM-RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
           KA   +  M R K V+PDR  +N LI+    SG  + A  +L+EM  +   +  +  T  
Sbjct: 63  KALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDK--NIAANVFTYS 120

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTI--AINCCSQTGDWEFACSVYDDM 295
           +++K+     + +   E YK++ +    G  P+V+     +   +++ + E A  VY  M
Sbjct: 121 SIIKSLVKEAKPE---ESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 177

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE--AKNQGISVGIISYSSLMGACSNAK 353
            + G  PD V    LI      GK++ + +IL E   +  G    +I++S+L+       
Sbjct: 178 VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTG 237

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             +KALE++  M     KP   T   LI  LC  +++ +  E+   M    + P+ + Y+
Sbjct: 238 ELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYN 297

Query: 414 ILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            L+   C+R    E   +    +   G+ P +V F  +I G C
Sbjct: 298 SLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFC 340



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 127/295 (43%), Gaps = 4/295 (1%)

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           Y  ++   AKAG +A+A   +  M+S++  P  V +N LI +   +G   +A D+   M 
Sbjct: 13  YDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMK 72

Query: 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284
            E   V+PD  T   L+    ++G  + AR++   +   NI      Y+  I    +   
Sbjct: 73  REKR-VEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            E +  V ++M   G  PD    + ++     +  +E A E+ Q     G     +SY  
Sbjct: 132 PEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHI 191

Query: 345 LMGACSNAKNWQKALELYEHM--KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           L+   +      ++L++   M  ++    P V T + LI  LC   +L K +EV   M  
Sbjct: 192 LIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE 251

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 456
            G  PN  TY+ L+    R + V     L  +  +  + P+ V +  +I G C R
Sbjct: 252 AGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKR 306



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 142/308 (46%), Gaps = 12/308 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYH------ARFFNVCKSQKAIKE-AFRFFKLVPN 89
           R   + +  ++ + M   G    +  YH      A+   + +S K + E A R    VPN
Sbjct: 163 RSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPN 222

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
             + TF+ L+     + + E A +V   + EAG K +   YTTLI    ++ KV    E+
Sbjct: 223 --VITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQAREL 280

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-KNVKPDRVVFNALITACG 208
           F +M  A I P+   Y +LI G  K G + +A   Y  M     ++P  V FN LI    
Sbjct: 281 FEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFC 340

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G + RA +++AEM  +   +  D  T   L+   + A ++D A EVYK + +      
Sbjct: 341 KLGKLGRANELVAEMGTK--GLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLD 398

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P      +    +TG+ + A +V++   K G +P+      L +     G+VE A ++++
Sbjct: 399 PVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLME 458

Query: 329 EAKNQGIS 336
            AK + I+
Sbjct: 459 PAKARDIT 466


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 199/443 (44%), Gaps = 14/443 (3%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  L + N  I+    +  ++E I LL+ + R GL      Y+     +CK+ K ++  
Sbjct: 247 VSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAE 305

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               K+V     P   T+N ++         + A Q+LR     G   D   Y +LI   
Sbjct: 306 HYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGL 365

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            + G +D    VF+E +  G++PN+     L+ G ++ G + +A      M      PD 
Sbjct: 366 CQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDI 425

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             +N +I    + G V  A +++ +  A+ H   PD  T   L+       ++D A E+ 
Sbjct: 426 WTYNLVINGLCKIGCVSDADNLVIDAIAKGHL--PDVFTFNTLIDGYCKKLKLDNAIEIV 483

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
             +  + +      Y   +N   + G +E     +  M +KG +P+ +  + L +    A
Sbjct: 484 DRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKA 543

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM-KSIKLKPTVS 375
            KVE A  +++E +N+G++  ++++ +LM G C N  +   A +L++ + +  K   T++
Sbjct: 544 RKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNG-DLDGAYQLFKRVDEQYKFSHTIA 602

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N +I A      +    ++ + M   G  P++ TY +++    +  ++  G   L   
Sbjct: 603 TYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVK 662

Query: 436 KEDGVIPNLVMFKCIIG-MCSRR 457
            E G+IP+L  F  ++  +C +R
Sbjct: 663 IEKGLIPSLTTFGRVLNCLCLKR 685



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 122/514 (23%), Positives = 225/514 (43%), Gaps = 45/514 (8%)

Query: 43  ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNML 98
           E  +L E+M   G+      ++     +C+ +  ++E+ R    V     +P L T N+ 
Sbjct: 199 EAHELFEEMLGLGICPDIMAFNKLIHTLCR-KGHVQESERLLNKVLKRGVSPNLFTVNIF 257

Query: 99  M-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           +   C  +  +E A ++L  V   GL  D   Y TLI    K+ KV        +MVN G
Sbjct: 258 IQGFCQRAMLNE-AIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEG 315

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
            EP+  TY ++IDG  K G +  A         K   PD   + +LI    Q G +DRA 
Sbjct: 316 YEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAI 375

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT--I 274
           +V  E  A    + P+ +    L+K  +  G + +A    K++++ +  G +P+++T  +
Sbjct: 376 NVFNE--AMEKGLKPNLVLCNTLVKGLSQQGLILQA---LKLMNEMSENGCSPDIWTYNL 430

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            IN   + G    A ++  D   KG +PD    + LID      K++ A EI+    N G
Sbjct: 431 VINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHG 490

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +S  +I+Y+S++     A  ++  +  ++ M      P + T N L  + C   ++ + +
Sbjct: 491 VSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEAL 550

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED----------GVIPNL 444
            ++ +M++ GL P+ + +  L+       D++    L  +  E            ++ N 
Sbjct: 551 NLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINA 610

Query: 445 VMFKCIIGMCSRRYEKARTLNEHVLSFNS--------GRPQIENKWTSLALMVYREAIVA 496
              K  + M  + + K   + E+  S +S        G  +  N  +  + ++ +  I  
Sbjct: 611 FAGKLNMNMAEKLFNK---MCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVK--IEK 665

Query: 497 GTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 530
           G IP++    +VL CL L      + R+ E +G+
Sbjct: 666 GLIPSLTTFGRVLNCLCL------KRRVHEAVGI 693



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 157/366 (42%), Gaps = 10/366 (2%)

Query: 15  NGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           +G    +  D S      N L + G I   I++  +   KGL   + V           Q
Sbjct: 345 DGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGL-KPNLVLCNTLVKGLSQQ 403

Query: 75  KAIKEAFRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
             I +A +    +     +P + T+N++++ +C     S+    V+  + +  L  D   
Sbjct: 404 GLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHL-PDVFT 462

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           + TLI    K  K+D   E+   M N G+ P+V TY ++++G  KAG+     G + +M 
Sbjct: 463 FNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMM 522

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            K   P+ + +N L  +  ++  V+ A +++ EM  +   + PD +  G LMK   + G 
Sbjct: 523 EKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNK--GLTPDVVNFGTLMKGFCDNGD 580

Query: 250 VDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           +D A +++K +  +Y    T   Y I IN  +   +   A  +++ M + G  PD     
Sbjct: 581 LDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYR 640

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            +ID     G + + +  L     +G+   + ++  ++      +   +A+ +   M   
Sbjct: 641 VMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHK 700

Query: 369 KLKPTV 374
            + P V
Sbjct: 701 GIVPEV 706



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 163/386 (42%), Gaps = 31/386 (8%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           + +    K   + +  +I   G  G  +   +VLAE    +     + + IGA M+    
Sbjct: 30  VKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVYIGA-MRNYGR 88

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G++  A +V++ +  +N + + + Y   +N   +   ++ A  VY  M  KG++PD   
Sbjct: 89  KGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYT 148

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            +  +       +  AA  +L    +QG     ++Y +++G      +  +A EL+E M 
Sbjct: 149 FTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEML 208

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
            + + P +   N LI  LC    + ++  +L+ +   G+ PN  T +I +    ++  + 
Sbjct: 209 GLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLN 268

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 485
             + LL      G+ P+++ +  +I G+C + ++      EH L     R  +   +   
Sbjct: 269 EAIRLLDGVGR-GLTPDVITYNTLICGLC-KNFKVVEA--EHYL-----RKMVNEGYEPD 319

Query: 486 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 545
                  +I+ G           LG +Q   NAD   +++ +          S  CSLI+
Sbjct: 320 GFTY--NSIIDGYCK--------LGMMQ---NAD---QILRDGAFKGFVPDESTYCSLIN 363

Query: 546 GF---GEYDPRAFSLLEEAASFGIVP 568
           G    G+ D RA ++  EA   G+ P
Sbjct: 364 GLCQDGDID-RAINVFNEAMEKGLKP 388



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 114/531 (21%), Positives = 219/531 (41%), Gaps = 47/531 (8%)

Query: 70  VCKSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVL---RLVQEA 121
           V K QK   +A   F  V        TL T+  ++       + E   +VL   R+  + 
Sbjct: 13  VVKYQKNPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDN 72

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           GL     +Y   +    + GK+    +VF  M     EP+V +Y A+++   +     +A
Sbjct: 73  GLLEG--VYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQA 130

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              Y  MR K + PD   F   + +  ++     A  +L  M ++    +   +    ++
Sbjct: 131 HKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQ--GCESSAVAYCTVI 188

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
                      A E+++ +    I      +   I+   + G  + +  + + + K+GV 
Sbjct: 189 GGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVS 248

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALE 360
           P+   ++  I        +  A  +L +   +G++  +I+Y++L+ G C N K  + A  
Sbjct: 249 PNLFTVNIFIQGFCQRAMLNEAIRLL-DGVGRGLTPDVITYNTLICGLCKNFKVVE-AEH 306

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
               M +   +P   T N++I   C    +    ++L D    G  P+  TY  L+    
Sbjct: 307 YLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLC 366

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR---YEKARTLNEHVLSFNSGRPQ 477
           +  D++  + + ++A E G+ PNLV+   ++   S++    +  + +NE  +S N   P 
Sbjct: 367 QDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNE--MSENGCSPD 424

Query: 478 IENKWT--------------SLALMVYREAIVAGTIPTVEVVSKVLG--C--LQLPYNAD 519
           I   WT              S A  +  +AI  G +P V   + ++   C  L+L    +
Sbjct: 425 I---WTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIE 481

Query: 520 IRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 568
           I +R+  N GVS D +  +++ + +   G+Y+     F L+ E    G VP
Sbjct: 482 IVDRMW-NHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEK---GCVP 528


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 168/370 (45%), Gaps = 6/370 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ T+++L+  C  ++  + AF     +   G+KAD  + ++L+     + + D   +V
Sbjct: 101 PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDV 160

Query: 150 -FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY--GIMRSKNVKPDRVVFNALITA 206
            FH M   G  P+  +Y  ++      G+   A       + +      + VV++ ++  
Sbjct: 161 LFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHG 220

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G V  A D+  EM  +  P  P+ +T  +++ A   A  VD+A+ + + +    ++
Sbjct: 221 LFKEGKVGEACDLFHEMTQQGVP--PNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQ 278

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y   I+  S  G W+ A  ++ +MT +GVIP+ V  S  + F    G++E A E 
Sbjct: 279 PDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREF 338

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
                 +G  + IISYS+L+   + A        L+  M    + P     N L+     
Sbjct: 339 FDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAK 398

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              + + M +  DM+  GL P+ +TY  ++ A  R   ++  +   +   + GV PN  +
Sbjct: 399 CGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAV 458

Query: 447 FKCII-GMCS 455
           ++C+I G C+
Sbjct: 459 YQCLIQGFCT 468



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 202/496 (40%), Gaps = 106/496 (21%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL--YTTLITTCAKSGKVD 144
           VP+  +S   +L SVC   + S+ A  +LR+  + G    C +  Y+T++    K GKV 
Sbjct: 171 VPD-AISYSTVLKSVCDDGR-SQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVG 228

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              ++FHEM   G+ PNV TY ++I    KA  V KA G    M    V+PD V +N LI
Sbjct: 229 EACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLI 288

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------- 257
                 G   +A  +  EM +    V P+ +T    +      G+++ ARE +       
Sbjct: 289 HGYSTLGQWKQAVRMFKEMTSR--GVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKG 346

Query: 258 ---------KMIHKYNIKG-------------------TPEVYTIAINCCSQTGDWEFAC 289
                     ++H Y   G                      V+ I +N  ++ G    A 
Sbjct: 347 HKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAM 406

Query: 290 SVYDDMTKKGVIPDEVFLSALID------------------------------------F 313
            +++DM K+G+ PD +   A+I                                     F
Sbjct: 407 FIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGF 466

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
             H   V+A  E++ E +N+G+   I+S++SL+          +A  +++ +     K  
Sbjct: 467 CTHGDLVKAE-ELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKAD 525

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           V+   +LI   C   ++ +   V   M S+G+ P+ +TY  L+  C +   ++ GL+L  
Sbjct: 526 VNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFR 585

Query: 434 QAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492
           +    GV P    +  I+ G+                 F++GR       T+ A  +++E
Sbjct: 586 ELLHKGVKPTTFTYGIILDGL-----------------FHAGR-------TAAAKEMFQE 621

Query: 493 AIVAG---TIPTVEVV 505
            I +G   TIPT  ++
Sbjct: 622 MIESGIAVTIPTYSIL 637



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/479 (24%), Positives = 198/479 (41%), Gaps = 60/479 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------------------ 76
           L ++G++ E  DL  +M ++G+      Y++    +CK++                    
Sbjct: 221 LFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPD 280

Query: 77  ----------------IKEAFRFFK------LVPNP-TLSTFNMLMSVCASSKDSEGAFQ 113
                            K+A R FK      ++PN  T STF   +  C   +  E A +
Sbjct: 281 NVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFL--CKHGRIEE-ARE 337

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173
               +   G K +   Y+TL+   A +G +  M  +F+ MV  GI PN H +  L++G A
Sbjct: 338 FFDSMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYA 397

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           K G V +A   +  M+ + + PD + + A+I A  + G++D A D    M  +   V+P+
Sbjct: 398 KCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDK--GVEPN 455

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
                 L++     G + +A E+   I    +      +   IN   + G    A  ++D
Sbjct: 456 FAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFD 515

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            + + G   D    ++LID     GK+  AF +     + GI   I++Y +L+  C    
Sbjct: 516 MIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNG 575

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
                L L+  +    +KPT  T   ++  L    +     E+  +M   G+     TYS
Sbjct: 576 RIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYS 635

Query: 414 ILLVACERKDDVEVGLMLLSQ-----AKEDGVIPNLV---MFKCIIGMCSRRYEKARTL 464
           ILL    R +  E  + +  +      K D VI N++   MFK      +RR E+A  L
Sbjct: 636 ILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFK------ARRREEAEGL 688



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 182/417 (43%), Gaps = 15/417 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + GRI E  +  + M  KG   ++ + ++   +   +   + +    F L+      P
Sbjct: 326 LCKHGRIEEAREFFDSMLAKGH-KLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVP 384

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               FN+L++  A       A  +   +Q+ GL  D   Y  +I    + G +D   + F
Sbjct: 385 NQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKF 444

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           + M++ G+EPN   Y  LI G    G + KA      +R+K + P  + F +LI    + 
Sbjct: 445 NHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKE 504

Query: 211 GAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
           G V    R FD++     +      D     +L+      G++  A  V+  +    I+ 
Sbjct: 505 GRVFEAQRIFDMIIRTGEKA-----DVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEP 559

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               Y   +N C + G  +    ++ ++  KGV P       ++D   HAG+  AA E+ 
Sbjct: 560 DIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMF 619

Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           QE    GI+V I +YS L+ G C N    ++A+ +++ + ++ +K  +  +N +I+ +  
Sbjct: 620 QEMIESGIAVTIPTYSILLTGLCRN-NCTEEAITVFQKLCAMNVKFDIVILNIMISKMFK 678

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
             +  +   + + +   GL P   TY+I++    ++  VE    + S   + G+ P 
Sbjct: 679 ARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPT 735



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/411 (21%), Positives = 182/411 (44%), Gaps = 13/411 (3%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H +N L+    + G + E + + EDM+++GL      Y A     C+         +F  
Sbjct: 387 HVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNH 446

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P  + +  L+    +  D   A +++  ++  GL      + +LI    K G+
Sbjct: 447 MIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGR 506

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           V     +F  ++  G + +V+ + +LIDG    G++++AF  +  M S  ++PD V +  
Sbjct: 507 VFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGT 566

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           L+  C ++G +D    +  E+   +H  V P   T G ++    +AG+   A+E+++ + 
Sbjct: 567 LVNGCCKNGRIDDGLILFREL---LHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMI 623

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +  I  T   Y+I +    +    E A +V+  +    V  D V L+ +I     A + E
Sbjct: 624 ESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRRE 683

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  +     + G+   + +Y+ +M       + ++A  ++  M    L PT   +N ++
Sbjct: 684 EAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSPTSHFINVIV 743

Query: 382 TALCDGDQLPKTMEVLS--DMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
             L +  ++ K    +   D KS+    +T +  + L +C+ K    + L+
Sbjct: 744 RTLLEKGEIVKAGIYMCRVDGKSILFEASTASMLLSLFSCKGKHREHLNLL 794



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 104/228 (45%), Gaps = 17/228 (7%)

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
           +P     S LID    A +++ AF        QG+   +I  SSL+    +AK   +A++
Sbjct: 100 LPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVD 159

Query: 361 -LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS-DMKSLGLCP-NTITYSILLV 417
            L+  M  +   P   + + ++ ++CD  +    +++L   +K  G CP N + YS ++ 
Sbjct: 160 VLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVH 219

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGR 475
              ++  V     L  +  + GV PN+V +  +I  +C +R  +KA+ +   ++  N  +
Sbjct: 220 GLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVG-NGVQ 278

Query: 476 PQ------IENKWTSL-----ALMVYREAIVAGTIPTVEVVSKVLGCL 512
           P       + + +++L     A+ +++E    G IP     S  +  L
Sbjct: 279 PDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFL 326


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 195/442 (44%), Gaps = 17/442 (3%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + + L S+NR++        +D       K L  + K+ H   ++   S     ++F   
Sbjct: 93  LDDALSSFNRMLHMHPPPSTVDF-----TKLLTSIAKMKH---YSTVLSLSTQMDSFG-- 142

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
             +P P + T N+L++     +    AF VL  + + G + D   + TLI      GK+ 
Sbjct: 143 --IP-PDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIG 199

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +F + +  G +P+V TYG L++G  K G  + A      M  KN +P+ + +N +I
Sbjct: 200 EALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTII 259

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            +  +   V  AF++ +EM  +   + PD  T  +L+ A  N  +      +   +    
Sbjct: 260 DSLCKDRQVTEAFNLFSEMITK--GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK 317

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           I     V++  ++   + G    A  V D M K+GV PD V  +AL+D      +++ A 
Sbjct: 318 IMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAV 377

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           ++     ++G    + SY+ L+      +   KA+ L E M    L     T N LI  L
Sbjct: 378 KVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGL 437

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   +L   + +  +M + G  P+ +TY ILL    +   +   ++LL   +   +  ++
Sbjct: 438 CHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADI 497

Query: 445 VMFKCII-GMC-SRRYEKARTL 464
           +++   I GMC +   E AR L
Sbjct: 498 LVYNIAIDGMCRAGELEAARDL 519



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 154/360 (42%), Gaps = 6/360 (1%)

Query: 82  RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  KL   P  +TFN L+  +C   K  E      + + E G + D   Y TL+    K 
Sbjct: 172 KLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIGE-GFQPDVVTYGTLMNGLCKV 230

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G   A   +   MV     PNV  Y  +ID   K  QV +AF  +  M +K + PD   +
Sbjct: 231 GNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTY 290

Query: 201 NALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           N+LI A            +L EM N+++ P   + +    ++ A    G +  A +V  M
Sbjct: 291 NSLIHALCNLCEWKHVTTLLNEMVNSKIMP---NVVVFSTVVDALCKEGMIAIAHDVVDM 347

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           + K  ++     YT  ++      + + A  V+D M  KG +P+    + LI+      +
Sbjct: 348 MIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQR 407

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           ++ A  +L++   QG+    ++Y++L+    +    Q A+ L+  M +    P + T   
Sbjct: 408 MDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRI 467

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           L+  LC    L + M +L  ++   L  + + Y+I +    R  ++E    L S     G
Sbjct: 468 LLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQG 527


>gi|449530988|ref|XP_004172473.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 347

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 164/345 (47%), Gaps = 30/345 (8%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           + +  G+ +  ++Y +LIT   +S ++  +  +  EM N  + PNV TYG+LI G    G
Sbjct: 1   MSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKG 60

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
            + KA+ AY  M  K + P+ ++ + ++++  + G +D A  +L ++ A++ P+      
Sbjct: 61  MMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQI-ADIDPI------ 113

Query: 237 IGALMKACANAGQVD------RAREVYKMIHKYNIKGTPE------VYTIAINCCSQTGD 284
                   A+A  V+      R  E  K++  +  K          VY IAI    ++ +
Sbjct: 114 -------AAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPMSNNIVYNIAITGLCKSKN 166

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            +    +  D+  KG  PD     +LI      GKV  AF +  +  N G+   I+ Y++
Sbjct: 167 IDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNA 226

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L+     + N  +A  L+  +    L PTV T N LI   C G +  + +E+   M+  G
Sbjct: 227 LINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEG 286

Query: 405 LCPNTITYSILL--VACERKDDVEVGLM--LLSQAKEDGVIPNLV 445
           +CP++ITYS L+  +  E K +  +GL+  ++   K   V+  LV
Sbjct: 287 ICPSSITYSTLIHGLYMEGKSEQSMGLLNEMMKAGKGSSVMDPLV 331



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 102/227 (44%), Gaps = 15/227 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVY-HARFFNVCKS-------QKAIKEAFRFFKL 86
           L R G+I E   +L  +      D+D +  HA    + KS       QK +    +    
Sbjct: 91  LYRHGKIDEANLILHQIA-----DIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMS 145

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +P      +N+ ++    SK+ +   ++L  +   G   D   Y +LI  C+  GKV+  
Sbjct: 146 IPMSNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEA 205

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           F +  +M+NAG+ PN+  Y ALI+G  K+G + +A   +  +  K + P  V +N LI  
Sbjct: 206 FCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDG 265

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
             + G    A ++  +M  E   + P  IT   L+      G+ +++
Sbjct: 266 YCKGGRTTEALELKDKMREE--GICPSSITYSTLIHGLYMEGKSEQS 310



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 5/166 (3%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFK--LVPN--PTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           VY+     +CKS K I +  R     L+    P   T+  L+  C++      AF +   
Sbjct: 153 VYNIAITGLCKS-KNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDD 211

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +  AGL  +  +Y  LI    KSG +D    +F+++   G+ P V TY  LIDG  K G+
Sbjct: 212 MINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGR 271

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
             +A      MR + + P  + ++ LI      G  +++  +L EM
Sbjct: 272 TTEALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSMGLLNEM 317



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 74/331 (22%), Positives = 151/331 (45%), Gaps = 24/331 (7%)

Query: 52  ERKGLLDMDKVYHARFFNVCKSQKAIK-----EAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           ER G+    ++Y++    V +S++  K        +  +L PN  + T+  L++      
Sbjct: 3   ERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPN--VVTYGSLIAGWCDKG 60

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTY 165
             + A+     + + G+  +  + + ++++  + GK+D    + H++  A I+P   H +
Sbjct: 61  MMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQI--ADIDPIAAHAH 118

Query: 166 GALIDGC----AKAGQVAKAFG--AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
              +        +  ++  +FG  A  I  S N     +V+N  IT   +S  +D    +
Sbjct: 119 SVELPKSDLRHLETQKIVDSFGKKAMSIPMSNN-----IVYNIAITGLCKSKNIDDVRRI 173

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L+++   +    PD+ T  +L+ AC+  G+V+ A  +   +    +     VY   IN  
Sbjct: 174 LSDL--LLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGL 231

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            ++G+ + A  +++ + +KG+ P  V  + LID     G+   A E+  + + +GI    
Sbjct: 232 CKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSS 291

Query: 340 ISYSSLM-GACSNAKNWQKALELYEHMKSIK 369
           I+YS+L+ G     K+ Q    L E MK+ K
Sbjct: 292 ITYSTLIHGLYMEGKSEQSMGLLNEMMKAGK 322



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTF 95
           G+++E   L +DM   GL+    VY+A    +CKS    +    F KL     +PT+ T+
Sbjct: 200 GKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTY 259

Query: 96  NMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           N L+   C   + +E A ++   ++E G+      Y+TLI      GK +    + +EM+
Sbjct: 260 NTLIDGYCKGGRTTE-ALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSMGLLNEMM 318

Query: 155 NAG 157
            AG
Sbjct: 319 KAG 321


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 163/342 (47%), Gaps = 10/342 (2%)

Query: 83  FFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITT 136
           F ++V N   P + T+N+++ V   SK +     V+ LV   +  G+  D   Y TLI+ 
Sbjct: 201 FRRMVANGIQPAIVTYNVVLHVY--SKIAVPWKDVVALVDSMKNDGIPLDRYTYNTLISC 258

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
           C +        +VF EM  AG EP+  T+ +L+D   KA    +A G    M      P 
Sbjct: 259 CRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEMELGGCPPS 318

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +N+LI++  + G +  A ++  EM  EV  + PD IT   L+     AG++D A   
Sbjct: 319 VVTYNSLISSYVKDGLLKEAAELKEEM--EVKGIQPDVITYTTLISGLDRAGKIDAAIGT 376

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           Y  + +   K     Y   I      G +    +V+DD+   G +PD V  + L+   G 
Sbjct: 377 YDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQ 436

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G       + +E K  G      +Y SL+ + S    + +++E+Y+ M    + P +ST
Sbjct: 437 NGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDIST 496

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            NA+++AL  G +  +  ++ ++M++L   P+ ++YS LL A
Sbjct: 497 YNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHA 538



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/428 (23%), Positives = 188/428 (43%), Gaps = 9/428 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G + E  +L E+ME KG+      Y      + ++ K       + ++
Sbjct: 321 TYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEM 380

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P L T+N L+ +            V   ++ AG   D   + TL+    ++G  
Sbjct: 381 LRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLLAVFGQNGLD 440

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
             +  VF EM  +G  P   TY +LI   ++ G   ++   Y  M    + PD   +NA+
Sbjct: 441 SEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAV 500

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           ++A  + G  ++A  + AEM  E     PD ++  +L+ A ANA ++D+ + + + I+  
Sbjct: 501 LSALARGGRWEQAEKLFAEM--ENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAE 558

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            I+    +    +   S+  +       + ++ ++    D   L+A++   G    V+  
Sbjct: 559 KIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKV 618

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            EIL   K   I++   +Y+SLM   S   + +K   +   +KS   +P   + N +I A
Sbjct: 619 EEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYA 678

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
                Q+ +   + S+MKS GL P+ +TY+I + +       E  + L+      G  PN
Sbjct: 679 YGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPN 738

Query: 444 LVMFKCII 451
              +  I+
Sbjct: 739 ERTYNSIL 746



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 146/344 (42%), Gaps = 5/344 (1%)

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
           + D   YT L++  +++ +      VF  MV  GI+P + TY  ++   +K     K   
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV 234

Query: 184 AY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
           A    M++  +  DR  +N LI+ C +      A  V  EM A     +PD +T  +L+ 
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAA--GFEPDKVTFNSLLD 292

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
               A   D A  V K +       +   Y   I+   + G  + A  + ++M  KG+ P
Sbjct: 293 VYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQP 352

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D +  + LI     AGK++AA     E    G    + +Y++L+        + + + ++
Sbjct: 353 DVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVF 412

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
           + ++S    P V T N L+          +   V  +MK  G  P   TY  L+ +  R 
Sbjct: 413 DDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRC 472

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 464
              +  + +  +  E G+ P++  +  ++   +R  R+E+A  L
Sbjct: 473 GLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKL 516



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 82/407 (20%), Positives = 178/407 (43%), Gaps = 40/407 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA--RFFNV---CKSQKAIKEAFRFFKLVPN 89
           L R G+I   I   ++M R G       Y+A  +   V        A+ +  R    VP+
Sbjct: 364 LDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPD 423

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
             + T+N L++V   +        V + ++++G   +   Y +LI++ ++ G  D   E+
Sbjct: 424 --VVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEI 481

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M+ AGI P++ TY A++   A+ G+  +A   +  M + + +PD + +++L+ A   
Sbjct: 482 YKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYAN 541

Query: 210 SGAVDR----AFDVLAE--------------MNAEVHPVDP---------------DHIT 236
           +  +D+    + D+ AE              +N++V+ +                 D   
Sbjct: 542 AKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINV 601

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           + A++        V +  E+  ++   +I  +   Y   ++  S+ GD E   ++  ++ 
Sbjct: 602 LNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIK 661

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
             G  PD    + +I   G  G+++ A  +  E K+ G+   I++Y+  + +      ++
Sbjct: 662 SSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFE 721

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +A++L  +M +   KP   T N+++   C   ++      LS++  L
Sbjct: 722 EAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNLPQL 768


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 99/432 (22%), Positives = 190/432 (43%), Gaps = 43/432 (9%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  + +YN LI    +  +  +  ++L +M  +G+      +++    +CK+ K  + A
Sbjct: 6   VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK-FERA 64

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
                ++      P+  T+N L+S     ++ + A  ++     +G   D   Y+ L   
Sbjct: 65  HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADG 124

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G++D  FE+  EM   G  PN+ TY  LIDG  KA +  KA+     + S    PD
Sbjct: 125 LCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPD 184

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +  ++    + G +D+A  ++  M        P  IT  ALM+     G+VD A  +
Sbjct: 185 VVTYTIIVDGLCKEGRLDKALKMVEGMLK--RGCTPSVITYTALMEGLCRTGRVDEAHHI 242

Query: 257 YK----------------MIHKY--------------NIKGTP--EVYTIAINCCSQTGD 284
           +K                +++ Y               I+GTP  +VY   ++   + G 
Sbjct: 243 FKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGR 302

Query: 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344
            +   +V++DM  +G +P+    + ++D     GKV+ AF  L+   + G    ++SY+ 
Sbjct: 303 LDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNI 362

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           ++     A   ++A ++ + M    + P   T N L+   C  ++    + +L +M   G
Sbjct: 363 IIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAG 422

Query: 405 LCPNTITYSILL 416
           + P+ +TY+ L+
Sbjct: 423 VDPDNVTYNTLI 434



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 159/372 (42%), Gaps = 46/372 (12%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           + E  +  D   Y  LI    K+ K D   E+ HEMV+ G+ P+  T+ +++DG  KAG+
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQS-------------------------- 210
             +A     +M  +N +P    +N LI+  C Q                           
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 211 --------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
                   G +D AF+++ EM+   +   P+ +T   L+     A + ++A E+ + +  
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSG--NGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVS 178

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                    YTI ++   + G  + A  + + M K+G  P  +  +AL++     G+V+ 
Sbjct: 179 SGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDE 238

Query: 323 AFEILQEAKNQGISVGIISYSSLM-GAC--SNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           A  I +E  ++  +   ++Y SL+ G C  S  K  QK ++       I+  P +   NA
Sbjct: 239 AHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD------GIRGTPYIDVYNA 292

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           L+   C   +L +   V  DM   G  PN  TY+I++    +   V+     L      G
Sbjct: 293 LMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG 352

Query: 440 VIPNLVMFKCII 451
            +P++V +  II
Sbjct: 353 CVPDVVSYNIII 364



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 151/329 (45%), Gaps = 7/329 (2%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+N++M  +C   K  E AF  L  +  AG   D   Y  +I    K+ K     +
Sbjct: 320 PNIKTYNIVMDGLCKHGKVDE-AFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQ 378

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  +M+ AGI P+  TY  L+    K  +   A G    M    V PD V +N LI+   
Sbjct: 379 VLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLS 438

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           Q+  +  A++++ EM      V     T   ++      G + +A  +   +  + ++  
Sbjct: 439 QTNRLGDAYELMHEMLRNGCVVSA-CTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEAN 497

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I I+   + G  + A S+  +M     + DEV  + +I     A +++ A ++ +
Sbjct: 498 TVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAR 554

Query: 329 E-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           E    +G+ +   +++ L+ A +  K   +AL L E M      P+V T N +IT LC  
Sbjct: 555 EMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKL 614

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           D++ K  E+  +M   G+  ++++Y++L+
Sbjct: 615 DKVDKAWELFDEMAVRGIVASSVSYTVLI 643



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 165/416 (39%), Gaps = 86/416 (20%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-- 85
           YN L+    ++GR+ E  ++ EDM  +G +   K Y+     +CK  K + EAF F +  
Sbjct: 290 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGK-VDEAFPFLESM 348

Query: 86  ----LVPN---------------------------------PTLSTFNMLMSVCASSKDS 108
                VP+                                 P   T+N LM+     +  
Sbjct: 349 HSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERF 408

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGA 167
           + A  +L+ + +AG+  D   Y TLI+  +++ ++   +E+ HEM+  G +     TY  
Sbjct: 409 DDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNT 468

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           +ID   K G + +A      M    V+ + V +N  I    + G +D A  +L+EM+   
Sbjct: 469 IIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR 528

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMI----------HKYNI------------ 265
             V    + IG        A Q+DRA ++ + +          H +N+            
Sbjct: 529 DEVSYTTVIIGL-----CKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLD 583

Query: 266 -----------KG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
                      +G +P V  Y + I C  +    + A  ++D+M  +G++   V  + LI
Sbjct: 584 EALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLI 643

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
                 G+ + A ++L+E  +    +  +    L  A       ++A EL   M +
Sbjct: 644 YGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRMTT 699



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 94/220 (42%), Gaps = 11/220 (5%)

Query: 22  AHDVSEQLHSYN----RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
            H V     +YN    RL ++GR+ E   LL +M+    L  +  Y      +CK+++  
Sbjct: 491 GHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT---LRDEVSYTTVIIGLCKAEQLD 547

Query: 78  KEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + +    ++V    L     TFN+L+     +K  + A  +L L+ + G       Y  +
Sbjct: 548 RASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMV 607

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           IT   K  KVD  +E+F EM   GI  +  +Y  LI G    G+  +A      M S + 
Sbjct: 608 ITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDC 667

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
           + D +    L  A    G  + A ++L  M  ++  +  D
Sbjct: 668 EIDDLKCRKLYLALRGQGRGEEAAELLRRMTTKMDSLSLD 707


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 131/568 (23%), Positives = 240/568 (42%), Gaps = 106/568 (18%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTTLITTCA 138
           R  +L   P + ++N L+        +E A ++L ++ +  +++   +   Y T+I    
Sbjct: 156 RMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVINGFF 215

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
             G+VD  + +F +M + GI PNV TY  +IDG  KA  V +A G +  M  K V+P+ V
Sbjct: 216 TEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIV 275

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +  LI      G       +L EM+A  H ++PD  T G L+      G+   AR+++ 
Sbjct: 276 TYTCLIHGYLSIGQWKEVVRMLKEMSA--HGLEPDCFTYGLLLDYLCKKGKCTEARKLFD 333

Query: 259 ----------------MIHKYNIKG-----------------TPEVYTIAINCCS----- 280
                           ++H Y  KG                 +P  Y   I  C+     
Sbjct: 334 SMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKA 393

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
             G+   A  +++ M ++G+ P+ V  + LID     G+V+ A     +  N+G++  I+
Sbjct: 394 MIGE---AMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIV 450

Query: 341 SYSSLMGACSNAKNWQKALELY-----------------------------------EHM 365
            ++SL+        W+KA EL+                                   + M
Sbjct: 451 VFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLM 510

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           + +  +P + + NALI   C   +  +  ++L  M S+GL PN  TY+ LL    R   +
Sbjct: 511 ERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRI 570

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWT 483
           +    +  +   +G+ P +V +  I+ G+  +RR+ +A+ L  ++++  SG+     +W+
Sbjct: 571 DDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMIT--SGK-----QWS 623

Query: 484 SLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSL 543
                +Y   I+   +     V + L   Q   + D++  ++    +   AL       L
Sbjct: 624 -----IYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDII-TFNIMIGAL-------L 670

Query: 544 IDGFGEYDPRAFSLLEEAASFGIVPCVS 571
            DG  E    A +L    ++ G+VP V+
Sbjct: 671 KDGRKE---DAMNLFATISANGLVPDVT 695



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/488 (21%), Positives = 211/488 (43%), Gaps = 13/488 (2%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH +     +Y  L+    ++G+ +E   L + M RKG+   D   +    +   ++ A+
Sbjct: 302 AHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGI-KPDVSIYGIILHGYATKGAL 360

Query: 78  KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            E   F  L+     +P    FN++    A       A  +   +++ GL  +   Y TL
Sbjct: 361 SEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATL 420

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           I    K G+VD     F++M+N G+ PN+  + +L+ G     +  KA   +  M ++ +
Sbjct: 421 IDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGI 480

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+ V FN ++      G V +A  ++  M  E     PD I+  AL++     G+ D A
Sbjct: 481 HPNVVFFNTIMCNLCTEGRVMKAQRLIDLM--ERVGTRPDIISYNALIRGHCLVGKTDEA 538

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            ++  ++    +K     Y   ++   + G  + A SV+ +M   G+ P  V  + ++  
Sbjct: 539 SKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHG 598

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
                +   A E+       G    I +Y+ ++   S      +AL++++ + S  L+  
Sbjct: 599 LFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVD 658

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
           + T N +I AL    +    M + + + + GL P+  TY ++      +  +E    + S
Sbjct: 659 IITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFS 718

Query: 434 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY-RE 492
           + ++ G  PN +M   ++     R + +R    ++   +     +E   TS+ + ++ RE
Sbjct: 719 EMEKSGCAPNSLMLNFLVRRLLLRGDISRA-GAYLSKIDEKNFSLEASTTSMLISLFSRE 777

Query: 493 AIVAGTIP 500
              A ++P
Sbjct: 778 EHQAKSLP 785



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/426 (20%), Positives = 192/426 (45%), Gaps = 10/426 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y   +  G+  E + +L++M   GL      Y      +CK  K  +    F  ++ 
Sbjct: 281 IHGY---LSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIR 337

Query: 89  N---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P +S + +++   A+          L L+   G+  +  ++  +    AK   +  
Sbjct: 338 KGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGE 397

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             ++F++M   G+ PNV  Y  LID   K G+V  A   +  M ++ V P+ VVF +L+ 
Sbjct: 398 AMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVY 457

Query: 206 ACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                   ++A ++  EM N  +HP   + +    +M      G+V +A+ +  ++ +  
Sbjct: 458 GLCTIDKWEKAGELFFEMVNQGIHP---NVVFFNTIMCNLCTEGRVMKAQRLIDLMERVG 514

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            +     Y   I      G  + A  + D M   G+ P+E   + L+      G+++ A+
Sbjct: 515 TRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAY 574

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            + QE  + GI+  +++Y++++      + + +A ELY +M +   + ++ T N ++  L
Sbjct: 575 SVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGL 634

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
              + + + +++   + S  L  + IT++I++ A  +    E  + L +    +G++P++
Sbjct: 635 SKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDV 694

Query: 445 VMFKCI 450
             ++ I
Sbjct: 695 TTYRLI 700



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/465 (21%), Positives = 185/465 (39%), Gaps = 56/465 (12%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           +L  +C + +  E    +LR + E G   +   Y TL+       + +   E+ H M + 
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADG 195

Query: 157 --------------------------------------GIEPNVHTYGALIDGCAKAGQV 178
                                                 GI PNV TY  +IDG  KA  V
Sbjct: 196 QVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVV 255

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            +A G +  M  K V+P+ V +  LI      G       +L EM+A  H ++PD  T G
Sbjct: 256 DRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSA--HGLEPDCFTYG 313

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
            L+      G+   AR+++  + +  IK    +Y I ++  +  G      S  D M   
Sbjct: 314 LLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGN 373

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ P+    + +         +  A +I  + + QG+S  +++Y++L+ A         A
Sbjct: 374 GISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDA 433

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
              +  M +  + P +    +L+  LC  D+  K  E+  +M + G+ PN + ++ ++  
Sbjct: 434 ELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCN 493

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRP 476
              +  V     L+   +  G  P+++ +  +I G C   + ++A  L + +LS   G  
Sbjct: 494 LCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSV--GLK 551

Query: 477 QIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVL 509
             E  + +L            A  V++E +  G  P V   + +L
Sbjct: 552 PNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTIL 596



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 149/335 (44%), Gaps = 12/335 (3%)

Query: 150 FHEMVN---AGIEPNVHTYGALIDGCAKAGQVAKAFGAYG-IMRSKNVKPDRVVFNALIT 205
           F+ M+    + + P+V TY  L+    + G++   F A+G I+++     D VV N L+ 
Sbjct: 79  FNRMIRDCCSKVAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLK 138

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
               +  V  A  VL    +E+    P+ ++   L+K   +  + + A E+  M+    +
Sbjct: 139 GLCDAKRVGEAMGVLLRRMSEL-GCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQV 197

Query: 266 KGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           +  P     Y   IN     G  + A +++ DMT +G+ P+ V  + +ID    A  V+ 
Sbjct: 198 RSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDR 257

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  + Q+  ++G+   I++Y+ L+    +   W++ + + + M +  L+P   T   L+ 
Sbjct: 258 AEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLD 317

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
            LC   +  +  ++   M   G+ P+   Y I+L     K  +      L     +G+ P
Sbjct: 318 YLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISP 377

Query: 443 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477
           N  +F  +   C+  + K   + E +  FN  R Q
Sbjct: 378 NHYIFNIVF--CA--FAKKAMIGEAMDIFNKMRQQ 408


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 203/444 (45%), Gaps = 16/444 (3%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+   +K G+ D   + F +M  AGI+ +V TY  +ID   K G +  A   +  M+   
Sbjct: 27  LLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAG 86

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
             PD V +N+LI   G+ G +D    +  +M       DPD IT  AL+       ++ +
Sbjct: 87  FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA--DCDPDVITYNALINCFCKFERMPK 144

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A E    +    +K     Y+  I+   + G  + A   + DM +  + P+E   ++LID
Sbjct: 145 AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLID 204

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               AG +  A ++++E    GI + +++Y++L+         ++A E++  M +  + P
Sbjct: 205 ANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP 264

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T  AL+       ++    ++L +MK   + P+ + Y  +L     +  +E   +L+
Sbjct: 265 NQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLI 324

Query: 433 SQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 490
            + KE G+  N V++  ++     S +  +A TL E +L    G    +N    +A  ++
Sbjct: 325 GEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGL--CKNNCFEVAKKLF 382

Query: 491 REAIVAGTIPTVEVVSKVL------GCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 544
            E +  G +P     + ++      G LQ   N  +R+R++E +G+  D    + L   +
Sbjct: 383 DEMLDKGMMPDKIAYTALIDGNMKHGNLQEALN--LRDRMIE-IGMELDLHAYTALIWGL 439

Query: 545 DGFGEYDPRAFSLLEEAASFGIVP 568
              G+   +A +LL+E    G++P
Sbjct: 440 SHSGQVQ-KARNLLDEMIGKGVLP 462



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/452 (23%), Positives = 200/452 (44%), Gaps = 29/452 (6%)

Query: 2   QDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLL 57
           ++G   M +  +   K A +  D+     +YN LI    + G + ECI + E M +    
Sbjct: 68  KEGDLEMARSLFTQMKEAGFTPDIV----TYNSLIDGHGKLGLLDECICIFEQM-KDADC 122

Query: 58  DMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAF 112
           D D + +    N  CK ++  K AF F   +      P + T++  +         + A 
Sbjct: 123 DPDVITYNALINCFCKFERMPK-AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           +    ++   L  +   YT+LI    K+G +    ++  E++ AGI+ NV TY AL+DG 
Sbjct: 182 KFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGL 241

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
            + G++ +A   +  M +  V P++  + AL+    ++  ++ A D+L EM  +   + P
Sbjct: 242 CEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKC--IKP 299

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           D +  G ++    N  +++ A+ +   I +  I     +YT  ++   ++G    A ++ 
Sbjct: 300 DLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLL 359

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           ++M              L+D        E A ++  E  ++G+    I+Y++L+      
Sbjct: 360 EEMLD------------LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKH 407

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            N Q+AL L + M  I ++  +    ALI  L    Q+ K   +L +M   G+ P+ + Y
Sbjct: 408 GNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVY 467

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
             L+        V+  L L ++  + G+I  L
Sbjct: 468 MCLIKKYYALGKVDEALELQNEMAKRGMITGL 499



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 159/360 (44%), Gaps = 18/360 (5%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+N+++       D E A  +   ++EAG   D   Y +LI    K G +D    +F +M
Sbjct: 58  TYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQM 117

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            +A  +P+V TY ALI+   K  ++ KAF     M++  +KP+ V ++  I A  + G +
Sbjct: 118 KDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGML 177

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A     +M      + P+  T  +L+ A   AG +  A ++ + I +  IK     YT
Sbjct: 178 QEAIKFFVDMRRVA--LTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYT 235

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             ++   + G  + A  V+  M   GV P++   +AL+     A ++E A +IL+E K +
Sbjct: 236 ALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEK 295

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            I   ++ Y +++    N    ++A  L   +K   +         L+ A     Q  + 
Sbjct: 296 CIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEA 355

Query: 394 MEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + +L +M  L  GLC N                 EV   L  +  + G++P+ + +  +I
Sbjct: 356 LTLLEEMLDLVDGLCKNNC--------------FEVAKKLFDEMLDKGMMPDKIAYTALI 401



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 162/385 (42%), Gaps = 25/385 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L+         +    +   +++A    D   Y  LI    K  ++   FE 
Sbjct: 89  PDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF 148

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            HEM   G++PNV TY   ID   K G + +A   +  MR   + P+   + +LI A  +
Sbjct: 149 LHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 208

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +  A  ++ E+      +  + +T  AL+      G++  A EV++ +    +    
Sbjct: 209 AGNLAEALKLVEEILQA--GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQ 266

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           E YT  ++   +  + E+A  +  +M +K + PD +    ++    +  ++E A  ++ E
Sbjct: 267 ETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGE 326

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-------------------KL 370
            K  GI+   + Y++LM A   +    +AL L E M  +                    L
Sbjct: 327 IKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEML 386

Query: 371 KPTVSTMNALITALCDGD----QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              +       TAL DG+     L + + +   M  +G+  +   Y+ L+        V+
Sbjct: 387 DKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQ 446

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII 451
               LL +    GV+P+ V++ C+I
Sbjct: 447 KARNLLDEMIGKGVLPDEVVYMCLI 471



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 126/258 (48%), Gaps = 4/258 (1%)

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           V P   +  AL+   +  G+ D +R+ +K +    IK +   Y I I+   + GD E A 
Sbjct: 17  VFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMAR 76

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
           S++  M + G  PD V  ++LID  G  G ++    I ++ K+      +I+Y++L+   
Sbjct: 77  SLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCF 136

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
              +   KA E    MK+  LKP V T +  I A C    L + ++   DM+ + L PN 
Sbjct: 137 CKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNE 196

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEH 467
            TY+ L+ A  +  ++   L L+ +  + G+  N+V +  ++ G+C   R ++A  +   
Sbjct: 197 FTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRA 256

Query: 468 VLSFNSGRPQIENKWTSL 485
           +L  N+G    +  +T+L
Sbjct: 257 ML--NAGVAPNQETYTAL 272



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 92/202 (45%)

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           ++ A E +  + K+ +   P      ++  S+ G  + +   + DM   G+       + 
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           +ID+    G +E A  +  + K  G +  I++Y+SL+          + + ++E MK   
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P V T NALI   C  +++PK  E L +MK+ GL PN +TYS  + A  ++  ++  +
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 430 MLLSQAKEDGVIPNLVMFKCII 451
                 +   + PN   +  +I
Sbjct: 182 KFFVDMRRVALTPNEFTYTSLI 203


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 175/398 (43%), Gaps = 7/398 (1%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPTLST----FNMLMSVCASSKDSEGAFQVLRLV 118
           Y    + +C + K +K A+ F +++           FN ++           A +V   +
Sbjct: 251 YATYLYGLCHA-KQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGM 309

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           ++ G   D   Y+ L+    K G V   + +  EM   GI PN+ +Y +L+ G  +AG+V
Sbjct: 310 KKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRV 369

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
             AF  +  ++ +  K D +V++ ++  C Q   ++  +D+  +M    H   PD     
Sbjct: 370 ELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVH--HNFVPDAYNYS 427

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           +L+ A     Q+  A EV++++    I       TI ++  S  G    A    D + + 
Sbjct: 428 SLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQF 487

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           GV+P       +I       K    + I  +   +G     + YS ++     A + Q+A
Sbjct: 488 GVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEA 547

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
             LY  M     KP + T  +LI  LC  D+LP+ M +   M   GL P+ I Y+ L+  
Sbjct: 548 FRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIAC 607

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             ++ +++  L +  + + +G+  +  ++ C+IG  S+
Sbjct: 608 YCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSK 645



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 175/386 (45%), Gaps = 6/386 (1%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA--GLKADCKLYTTLITTCAKSGKVDA 145
           P+P + ++++LMS+            +  L +    G++ +   Y T +     + +V +
Sbjct: 207 PSPNVYSYSVLMSMYTHGAKLCLEEALELLSEMEVEGVRPNAATYATYLYGLCHAKQVKS 266

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            +     +   G   N + + A+I G    GQV KA   +  M+     PD   ++ L+ 
Sbjct: 267 AWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVD 326

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G V   + +L EM    + + P+ ++  +L+     AG+V+ A E++K +     
Sbjct: 327 GLCKQGDVLTGYYMLVEMAR--NGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGF 384

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K    VY+I ++ C Q  D E    +++DM     +PD    S+LI       +++ A E
Sbjct: 385 KHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALE 444

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + +   + GI   +++ + L+   SN     +A    + ++   + P++ T   +I  LC
Sbjct: 445 VFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLC 504

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             ++      + +DM   G  P+T+ YSI++    +  D++    L  +  ++G  PN+ 
Sbjct: 505 KVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIF 564

Query: 446 MFKCII-GMC-SRRYEKARTLNEHVL 469
            +  +I G+C   +  +  TL +H++
Sbjct: 565 TYTSLINGLCHDDKLPEVMTLFKHMI 590



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 143/309 (46%), Gaps = 5/309 (1%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS--KNVKPDRVVFNALITA 206
           +F +M ++G  PNV++Y  L+       ++        +     + V+P+   +   +  
Sbjct: 198 LFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALELLSEMEVEGVRPNAATYATYLYG 257

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
              +  V  A++ L  +    +P +  +    A++    + GQV +A EV+  + K    
Sbjct: 258 LCHAKQVKSAWNFLQMLCQRGYPCN--NYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFV 315

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+I ++   + GD      +  +M + G+ P+ V  S+L+     AG+VE AFE+
Sbjct: 316 PDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFEL 375

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            +  K+QG     I YS ++  C    + +   +L+  M      P     ++LI A C 
Sbjct: 376 FKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCR 435

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             QL + +EV   M S G+CPN +T +IL+     +  +    + L + ++ GV+P+L  
Sbjct: 436 HRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCT 495

Query: 447 FKCII-GMC 454
           ++ II G+C
Sbjct: 496 YRVIIHGLC 504



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 306 FLSALIDFAGHAGKVEAAFEIL-QEAKNQGISVGIIS-YSSLMGACSNAKNWQKALELYE 363
            + +++D  G+AG     FE++   A N G S+ +   Y++++        ++ AL  Y 
Sbjct: 110 LIQSVVDHCGNAGP--ELFELVPMLASNLGGSMTLPQVYATVIRVFVELSMFEDALVTYV 167

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
             K + ++  V   N L+  L +G+Q+     +  DMKS G  PN  +YS+L+
Sbjct: 168 EAKKVGVELQVC--NFLLKRLVEGNQIMYARSLFDDMKSSGPSPNVYSYSVLM 218


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 185/406 (45%), Gaps = 16/406 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFR 82
           YN LI    +  + +E +  LE ++  GL+     Y +   ++ K  +     A+ E  +
Sbjct: 250 YNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMK 309

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++ L PN  L  +N L+   +     +    V  L+++ G+  +   Y  LI   A++G 
Sbjct: 310 WYGLRPN--LKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGL 367

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D +  ++ EM +  I PN + Y  +I      GQ  K       M+   V PD  V+N 
Sbjct: 368 MDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNV 427

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I   G++  +++A   +A    +   ++PD ++  +L+ AC  AGQ   AR++Y  +  
Sbjct: 428 IINTFGRTRQLEQA--RIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVN 485

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                T + + I I+   +   W     + ++M  KG+ P+ V  + L+D    A   + 
Sbjct: 486 DGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQD 545

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A E LQ  K  G+     +YS+L  A +     ++ L + + M+   ++  ++ +N LI 
Sbjct: 546 AVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLIN 605

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDV 425
           A     +  +   V   +K  GL  + ITY+ L   L+  E+ D+V
Sbjct: 606 AFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEV 651



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 180/393 (45%), Gaps = 15/393 (3%)

Query: 90  PTLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + ++  ++  C     D    F++ + +Q  G++ D K+Y  LI  C ++ K +    
Sbjct: 209 PDVVSYTHVIQACRHGVVDIYTGFRLFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMF 268

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI---T 205
              ++  +G+  +  +Y +L+    K G+ A+A      M+   ++P+   +N L+   +
Sbjct: 269 FLEKLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYS 328

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
             GQ   +D    +L +    +     + IT   L+ A A AG +DR   +Y+ +   +I
Sbjct: 329 RKGQLQQIDTVKTLLRDTGMSI-----NKITYCLLIDAYARAGLMDRLEALYQEMRDCDI 383

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           +    +Y   I     TG W+    +  +M + GV PD    + +I+  G   ++E A  
Sbjct: 384 RPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARI 443

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
              + ++ GI   ++S++SL+ AC  A    +A +LY  M +    PT  T N +I  L 
Sbjct: 444 AFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLG 503

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
           +  +     E++ +M+S G+ PN +TY+ L+    +    +  +  L   KEDG+ P+  
Sbjct: 504 EHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPT 563

Query: 446 MFKCI------IGMCSRRYEKARTLNEHVLSFN 472
            +  +      +GMC +     +T+ +  +  N
Sbjct: 564 AYSALANAYAQLGMCEQTLHVLQTMEKENIEIN 596



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 194/459 (42%), Gaps = 20/459 (4%)

Query: 13  YPNGKHANYAHDVSEQLHS------YNRLI---RQGR-ISECIDLLEDMERKGLLDMDKV 62
           Y   +  + A +V+E+L S      YN L+    Q R   + ++ L  M+  G    D V
Sbjct: 154 YGRERKLHKALEVAEKLGSNLQRRGYNALVGAYAQNRDYGKALETLSKMKTLGF-PPDVV 212

Query: 63  YHARFFNVCKSQKA-IKEAFRFFKLVPNPTLST----FNMLMSVCASS-KDSEGAFQVLR 116
            +      C+     I   FR F+ +    +      +N L+  C  + K +EG F  L 
Sbjct: 213 SYTHVIQACRHGVVDIYTGFRLFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMF-FLE 271

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
            +Q +GL AD   Y +L+ +  K G+      +  EM   G+ PN+  Y  L+ G ++ G
Sbjct: 272 KLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKG 331

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           Q+ +      ++R   +  +++ +  LI A  ++G +DR   +  EM      + P+   
Sbjct: 332 QLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRD--CDIRPNTYM 389

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
              ++    + GQ  +  ++ + + +  +     VY + IN   +T   E A   +  M 
Sbjct: 390 YARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQ 449

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
             G+ PD V  ++LID    AG+   A ++  +  N G +    +++ ++      K W 
Sbjct: 450 DGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWN 509

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
              E+ E M+S  + P V T   L+            +E L  MK  G+ P+   YS L 
Sbjct: 510 DVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALA 569

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
            A  +    E  L +L   +++ +  NL M   +I   S
Sbjct: 570 NAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFS 608



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 172/366 (46%), Gaps = 15/366 (4%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN------VCKSQKAIK 78
           L +YN L+    R+G++ + ID ++ + R   + ++K+ +    +      +    +A+ 
Sbjct: 317 LKAYNTLLGGYSRKGQLQQ-IDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALY 375

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +  R   + PN  +  +  ++++   +   +   ++LR +Q+AG+  D  +Y  +I T  
Sbjct: 376 QEMRDCDIRPNTYM--YARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFG 433

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           ++ +++     F +M + GIEP+V ++ +LID C KAGQ  +A   Y  M +    P   
Sbjct: 434 RTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQ 493

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            FN +I   G+    +   +++ EM ++   + P+ +T   L+   A A     A E  +
Sbjct: 494 TFNIVIHGLGEHKRWNDVNEMVEEMRSK--GMFPNVVTYTTLVDVYAQARLFQDAVECLQ 551

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + +  +  +P  Y+   N  +Q G  E    V   M K+ +  +   L+ LI+    AG
Sbjct: 552 TMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMAG 611

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           + + AF + +  K  G++   I+Y++LM A   A+   +   +++ M     +P     +
Sbjct: 612 RSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAGCRPDGKAKD 671

Query: 379 ALITAL 384
            L +A 
Sbjct: 672 MLRSAF 677


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/433 (23%), Positives = 197/433 (45%), Gaps = 9/433 (2%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS---- 93
           +G +   + LL++M  KGL     VY +    +C ++  + +A R  + +    ++    
Sbjct: 300 RGELENAVKLLDEMAAKGLESNATVYTSVIALLC-NKGQVSDALRVLEDMTMHGVALDAV 358

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
            F  ++S   S  D   A ++   +Q+ GL AD   +T LI    ++G++     V  EM
Sbjct: 359 VFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEM 418

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           V+ G++ +V TY  LIDG  K G + +AF  +  M  + V P+ V + AL     + G V
Sbjct: 419 VDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDV 478

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++L EM  +   ++ +  T  +L+      G +++A  +   +     +     YT
Sbjct: 479 RAANELLHEMCNK--GLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYT 536

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+   ++G+++ A ++  +M  KG+ P     + L++    +G+VE   ++L+    +
Sbjct: 537 TLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEK 596

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            +   +++Y+SLM      KN +   E+Y+ M S ++ P  +T N LI   C    + + 
Sbjct: 597 NVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEA 656

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI--PNLVMFKCII 451
           +    +M   GL     +YS L+    +K       +   + + +G+   P++  F   I
Sbjct: 657 LYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDI 716

Query: 452 GMCSRRYEKARTL 464
                  E   TL
Sbjct: 717 SFNEDNLESTITL 729



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 170/383 (44%), Gaps = 5/383 (1%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           N   S+  + EA   F+ +P+  + + N+L+    S+   + A Q      E     D  
Sbjct: 232 NAVLSRLPLDEAIALFRELPDKNVCSHNILLKALLSAGRLKDACQHF---DEMSSPPDVV 288

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            Y T++      G+++   ++  EM   G+E N   Y ++I      GQV+ A      M
Sbjct: 289 TYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDM 348

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               V  D VVF  +I+     G +  A  +  EM  +   +  D +T  AL+     AG
Sbjct: 349 TMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEM--QKRGLAADRVTHTALINGLCRAG 406

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           ++  A  V + +    +      YT+ I+   + G+   A  V+++M  + V P+ V  +
Sbjct: 407 ELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYT 466

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           AL D     G V AA E+L E  N+G+ + + +Y+SL+       N ++A+ +   M++ 
Sbjct: 467 ALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAA 526

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
             +  V T   LI  LC   +  +   +L +M   G+ P+  TY++L+        VE G
Sbjct: 527 GHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGG 586

Query: 429 LMLLSQAKEDGVIPNLVMFKCII 451
             LL    E  V PN+V +  ++
Sbjct: 587 KKLLEWMLEKNVRPNVVTYNSLM 609



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 186/407 (45%), Gaps = 7/407 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L  +G++S+ + +LEDM   G+  +D V      +   S+  +  A R F+ +    L+ 
Sbjct: 332 LCNKGQVSDALRVLEDMTMHGVA-LDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAA 390

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              T   L++    + + + A +VL+ + + GL  D   YT LI    K G +   F V 
Sbjct: 391 DRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVH 450

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           +EMV   + PNV TY AL DG  K G V  A      M +K ++ +   +N+LI    + 
Sbjct: 451 NEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKF 510

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G +++A  ++ EM A  H  D    T   L+     +G+ DRA  + + +    IK +  
Sbjct: 511 GNLEQAMRIMTEMEAAGHRTDV--YTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIA 568

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y + +N    +G  E    + + M +K V P+ V  ++L+        +++  EI +  
Sbjct: 569 TYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGM 628

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            +Q ++    +Y+ L+     A+N ++AL  ++ M    L+ T S+ +ALI  L    + 
Sbjct: 629 HSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKF 688

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
            +       M++ GL      YS  +     +D++E  + L  +  E
Sbjct: 689 SEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITLCDELVE 735



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 169/359 (47%), Gaps = 15/359 (4%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           ++LR +++ GL    +    +++       +D    +F E+ +     NV ++  L+   
Sbjct: 214 ELLRRLRQYGLSPSPESCNAVLSRLP----LDEAIALFRELPDK----NVCSHNILLKAL 265

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
             AG++  A   +  M S    PD V +  ++      G ++ A  +L EM A+   ++ 
Sbjct: 266 LSAGRLKDACQHFDEMSSP---PDVVTYGTMVHGYCVRGELENAVKLLDEMAAK--GLES 320

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           +     +++    N GQV  A  V + +  + +     V+T  I+     GD   A  ++
Sbjct: 321 NATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLF 380

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           ++M K+G+  D V  +ALI+    AG+++ A  +LQE  ++G+ V +++Y+ L+      
Sbjct: 381 EEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKR 440

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            N  +A  ++  M   ++ P V T  AL   LC    +    E+L +M + GL  N  TY
Sbjct: 441 GNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTY 500

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVL 469
           + L+    +  ++E  + ++++ +  G   ++  +  +I  +C S  +++A  + + +L
Sbjct: 501 NSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEML 559


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 166/340 (48%), Gaps = 5/340 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  +I    K GK     +V  +M   G  P+V TY  +IDG  KAG++ KA      M 
Sbjct: 232 FDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMV 291

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           +K + P+ + FN LI    +   V  A  V  EM  +   + P+ +T  +L+    + G+
Sbjct: 292 AKRIHPNEITFNILIDGFCRDENVTAAKKVFEEM--QRQGLQPNVVTYNSLINGLCSNGK 349

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D A  +   +    +K     Y   IN   +    + A  + DD+ K+G+ P+ +  + 
Sbjct: 350 LDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LID  G AG+++ AF +     + G+   + +Y+ L+       N ++A +L + M+   
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           LK  + T N L+ ALC   +  K + +L +M  +GL P+ +TY+ L+    R+ +    L
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAAL 529

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA-RTLNE 466
            + +  ++ G   N+V +  +I G C++ + E+A R LNE
Sbjct: 530 NVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNE 569



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 165/386 (42%), Gaps = 40/386 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N L + G+  +  D++EDM+  G       Y+      CK+ K  K      ++V    +
Sbjct: 237 NGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIH 296

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   TFN+L+      ++   A +V   +Q  GL+ +   Y +LI     +GK+D    +
Sbjct: 297 PNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGL 356

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M   G++PNV TY ALI+G  K   + +A      +  + + P+ + FN LI A G+
Sbjct: 357 QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGK 416

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +D AF +L  M  +   V P+  T   L+      G V  AR++ K +    +K   
Sbjct: 417 AGRMDDAF-LLRSMMLDTG-VCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADL 474

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I ++   + G+   A  + D+M + G+ P  +  +ALID     G   AA  +   
Sbjct: 475 VTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTL 534

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            + +G    I++Y                                   N LI   C+  +
Sbjct: 535 MEKKGRRANIVTY-----------------------------------NVLIKGFCNKGK 559

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSIL 415
           L +   +L++M   GL PN  TY IL
Sbjct: 560 LEEANRLLNEMLEKGLIPNRTTYDIL 585



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 159/343 (46%), Gaps = 2/343 (0%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           ++ +  K G++  +  V+ EM+   I  NV T+  +I+G  K G+  KA      M++  
Sbjct: 200 MLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWG 259

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
             P  + +N +I    ++G + +A  +L EM A+   + P+ IT   L+        V  
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAK--RIHPNEITFNILIDGFCRDENVTA 317

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A++V++ + +  ++     Y   IN     G  + A  + D M+  G+ P+ V  +ALI+
Sbjct: 318 AKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN 377

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                  ++ A E+L +   +G++  +I++++L+ A   A     A  L   M    + P
Sbjct: 378 GFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            VST N LI   C    + +  ++  +M+  GL  + +TY+IL+ A  +K +    + LL
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLL 497

Query: 433 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 475
            +  E G+ P+ + +  +I    R       LN   L    GR
Sbjct: 498 DEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGR 540


>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 399

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 171/368 (46%), Gaps = 12/368 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPTLSTF 95
           G +     ++ +M   G+     VY+A    + K+   +KA++   R  +        T+
Sbjct: 28  GSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEVYQRMKRERCRTNTETY 87

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            ++++V   SK    A +V + +Q  G KA+   YT L+   A+ G  +   EVF EM  
Sbjct: 88  TLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEEMQQ 147

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           AG EP+V+ Y AL++  ++AG    A   + +M+    +PDR  +N L+ A G++G    
Sbjct: 148 AGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHRE 207

Query: 216 AFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           A  V   +  + + P    H+    L+ A A +G V R  EV   +HK  +         
Sbjct: 208 AEAVFESLKRQGMAPTMKSHML---LLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNA 264

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF--AGHAGKVEAAFEILQEAKN 332
            +N   + G  +    +   M ++G      +  A+  +  AG+  ++EAAF  L+    
Sbjct: 265 MLNAYGRAGRLDDMERLLAAMERRGTRDVGTYNVAVNAYGRAGYLERMEAAFASLE---R 321

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +G++  +++++S MGA +  K +++ LE++E M      P   T   L+ A  D  Q+ +
Sbjct: 322 RGLAADVVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVLVAACSDERQVEQ 381

Query: 393 TMEVLSDM 400
              ++  M
Sbjct: 382 VTAIVRSM 389



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 154/368 (41%), Gaps = 7/368 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT  T+ +L+    ++     A  V+  ++E G+     +Y   +    K+   +   EV
Sbjct: 12  PTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEV 71

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M       N  TY  +I+   K+ Q   A   +  M+S   K +   + AL+ A  +
Sbjct: 72  YQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAR 131

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  ++A +V  EM    H  +PD     ALM+A + AG    A E++ ++     +   
Sbjct: 132 EGLCEKAEEVFEEMQQAGH--EPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDR 189

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEIL 327
             Y I ++   + G    A +V++ + ++G+ P     S ++  A HA  G V    E++
Sbjct: 190 ASYNILVDAYGRAGLHREAEAVFESLKRQGMAP--TMKSHMLLLAAHARSGNVARCEEVM 247

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            +    G++   I+ ++++ A   A        L   M+    +  V T N  + A    
Sbjct: 248 AQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRGTR-DVGTYNVAVNAYGRA 306

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             L +     + ++  GL  + +T++  + A  RK +    L +  +  + G  P+    
Sbjct: 307 GYLERMEAAFASLERRGLAADVVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTA 366

Query: 448 KCIIGMCS 455
           K ++  CS
Sbjct: 367 KVLVAACS 374



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 127/281 (45%), Gaps = 5/281 (1%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           ++  ++ A   P   TY  L+     AG + +A G    MR   + P   V+NA +    
Sbjct: 1   MYAALLEARCVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLL 60

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++   ++A +V   M  E    + +  T+  ++     + Q   A +V+K +     K  
Sbjct: 61  KARCAEKAVEVYQRMKRERCRTNTETYTL--MINVYGKSKQPMSAMKVFKEMQSIGCKAN 118

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  +N  ++ G  E A  V+++M + G  PD    +AL++    AG  +AA EI  
Sbjct: 119 ICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFS 178

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
             ++ G      SY+ L+ A   A   ++A  ++E +K   + PT+ +   L+ A     
Sbjct: 179 LMQHMGCEPDRASYNILVDAYGRAGLHREAEAVFESLKRQGMAPTMKSHMLLLAAHARSG 238

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVE 426
            + +  EV++ +   GL P+TI  + +L A     R DD+E
Sbjct: 239 NVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDME 279



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 143/339 (42%), Gaps = 9/339 (2%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y  L+     +G +     V  EM   GI P+   Y A +DG  KA    KA   Y  M+
Sbjct: 17  YALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLLKARCAEKAVEVYQRMK 76

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            +  + +   +  +I   G+S     A  V  EM +       +  T  AL+ A A  G 
Sbjct: 77  RERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQS--IGCKANICTYTALVNAFAREGL 134

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
            ++A EV++ + +   +     Y   +   S+ G  + A  ++  M   G  PD    + 
Sbjct: 135 CEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNI 194

Query: 310 LIDFAGHAG---KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           L+D  G AG   + EA FE L   K QG++  + S+  L+ A + + N  +  E+   + 
Sbjct: 195 LVDAYGRAGLHREAEAVFESL---KRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQLH 251

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              L P    +NA++ A     +L     +L+ M+  G   +  TY++ + A  R   +E
Sbjct: 252 KSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAMERRG-TRDVGTYNVAVNAYGRAGYLE 310

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
                 +  +  G+  ++V +   +G  +R+ E  R L 
Sbjct: 311 RMEAAFASLERRGLAADVVTWTSRMGAYARKKEYRRCLE 349



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%)

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +Y  + +   +P E   + L+     AG +  A  ++ E +  GI      Y++ +    
Sbjct: 1   MYAALLEARCVPTEDTYALLLRAYCTAGSLHRAEGVISEMREHGIPPSATVYNAYLDGLL 60

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
            A+  +KA+E+Y+ MK  + +    T   +I       Q    M+V  +M+S+G   N  
Sbjct: 61  KARCAEKAVEVYQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANIC 120

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           TY+ L+ A  R+   E    +  + ++ G  P++  +  ++   SR
Sbjct: 121 TYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSR 166



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/177 (21%), Positives = 80/177 (45%), Gaps = 11/177 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ +  +L++  A S +     +V+  + ++GL  D      ++    ++G++D M  +
Sbjct: 222 PTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDTIALNAMLNAYGRAGRLDDMERL 281

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M   G   +V TY   ++   +AG + +   A+  +  + +  D V + + + A  +
Sbjct: 282 LAAMERRGTR-DVGTYNVAVNAYGRAGYLERMEAAFASLERRGLAADVVTWTSRMGAYAR 340

Query: 210 SGAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRAREVYKMIHK 262
                R  ++  EM      VD    PD  T   L+ AC++  QV++   + + +HK
Sbjct: 341 KKEYRRCLEIFEEM------VDAGCYPDAGTAKVLVAACSDERQVEQVTAIVRSMHK 391


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/420 (25%), Positives = 180/420 (42%), Gaps = 47/420 (11%)

Query: 39  GRISECIDLLEDMERKGLLDMDKV-YHARFFNVC------KSQKAIKEAFRFFKLVPNPT 91
           G + E + LL D+      D D V Y+A    +C      + Q  ++E  R     P P 
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVG--CP-PN 259

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + TFN L+     +   E   QVL  + + G   D ++Y T++    K G ++   E+  
Sbjct: 260 VVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILD 319

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M + G++PNV  Y  ++ G   A +  +A      M   +   D V FN L+    Q+G
Sbjct: 320 RMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNG 379

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            V R  ++L +M    H   PD IT   ++      G +D A  + K +     +     
Sbjct: 380 LVYRVIELLEQMLE--HGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTIS 437

Query: 272 YTIAINCCSQTGDW-----------EFACS--------VYDDMTKKGVI----------- 301
           YTI +        W           E  CS        V + + KKG++           
Sbjct: 438 YTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQML 497

Query: 302 -----PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
                PD +  S +ID  G AGK + A E+L    N+G+S   I YSS+  A S      
Sbjct: 498 LNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRIN 557

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           + ++++++++ + ++      NA+I++LC      + +E L+ M S G  PN  TY+IL+
Sbjct: 558 RVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILI 617



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/435 (21%), Positives = 176/435 (40%), Gaps = 41/435 (9%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    ++Y  ++R    +GRI++ + +L++M R+G   +  +YH      C   +     
Sbjct: 111 VPPNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAAC--SRGGGGG 168

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTC 137
           FR                            A +VL+ +   G   D   C L   L   C
Sbjct: 169 FR---------------------------SAVRVLQDLHGRGCALDVGNCNL--VLNAVC 199

Query: 138 AKSGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
            + G VD    +  ++  + G +P+V +Y A++ G   A +  +       M      P+
Sbjct: 200 DQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPN 259

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V FN LI    ++G  +R   VLA+M    H   PD      ++      G ++ A E+
Sbjct: 260 VVTFNTLIGYLCRNGLFERVHQVLAQMVD--HGCTPDIRMYATVLDGVCKEGHLEVAHEI 317

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
              +  Y +K     Y   +        WE A  +  +M       D+V  + L+DF   
Sbjct: 318 LDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQ 377

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G V    E+L++    G    +I+Y++++          +A+ L + M +   +P   +
Sbjct: 378 NGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTIS 437

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
              ++  LC  ++     +++S M   G  PN +T++ ++    +K  VE  + LL Q  
Sbjct: 438 YTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQML 497

Query: 437 EDGVIPNLVMFKCII 451
            +G  P+L+ +  +I
Sbjct: 498 LNGCSPDLISYSTVI 512



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/353 (20%), Positives = 140/353 (39%), Gaps = 42/353 (11%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA----------- 206
           + PN +TY  ++      G++A A      MR +   P   +++ ++ A           
Sbjct: 111 VPPNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFR 170

Query: 207 ----------------------------CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
                                       C Q G+VD A  +L ++       DPD ++  
Sbjct: 171 SAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFG-CDPDVVSYN 229

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           A++K    A +  R +++ + + +         +   I    + G +E    V   M   
Sbjct: 230 AVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDH 289

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G  PD    + ++D     G +E A EIL    + G+   ++ Y++++    +A+ W++A
Sbjct: 290 GCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQA 349

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            EL   M          T N L+   C    + + +E+L  M   G  P+ ITY+ ++  
Sbjct: 350 EELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVING 409

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVL 469
             ++  ++  +MLL      G  PN + +  ++ G+CS  R+  A  L   ++
Sbjct: 410 FCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMI 462


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 195/410 (47%), Gaps = 17/410 (4%)

Query: 70  VCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           VC+  + IKEA     L+      P + +++ +++      + +  ++++ +++  GLK 
Sbjct: 256 VCQLGR-IKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKP 314

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           +  +Y ++I    +  K+    E F EM+  GI P+   Y  LIDG  K G +  A   +
Sbjct: 315 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M S+++ PD + + A+I+   Q G +  A  +  EM  +   ++PD +T   L+    
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCK--GLEPDSVTFTELINGYC 432

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
            AG +  A  V+   H      +P V  YT  I+   + GD + A  +  +M K G+ P+
Sbjct: 433 KAGHMKDAFRVHN--HMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
               +++++    +G +E A +++ E +  G++   ++Y++LM A   +    KA E+ +
Sbjct: 491 IFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILK 550

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M    L+PT+ T N L+   C    L    ++L+ M + G+ PN  T++ L+     ++
Sbjct: 551 EMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRN 610

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFN 472
           +++    +       GV P+   ++ ++ G C     KAR + E    F 
Sbjct: 611 NLKAATAIYKDMCSRGVGPDGKTYENLVKGHC-----KARNMKEAWFLFQ 655



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 195/440 (44%), Gaps = 20/440 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQKAIKEA 80
           SYN +I    + GRI E   LL  ME KG       Y      + RF  + K  K I E 
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI-EV 306

Query: 81  FRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
            +   L PN  +  S   +L  +C  ++  E   +++R     G+  D  +YTTLI    
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR----QGILPDTVVYTTLIDGFC 362

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G + A  + F+EM +  I P+V TY A+I G  + G + +A   +  M  K ++PD V
Sbjct: 363 KRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSV 422

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            F  LI    ++G +  AF V   M        P+ +T   L+      G +D A E+  
Sbjct: 423 TFTELINGYCKAGHMKDAFRVHNHMIQA--GCSPNVVTYTTLIDGLCKEGDLDSANELLH 480

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + K  ++     Y   +N   ++G+ E A  +  +    G+  D V  + L+D    +G
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 540

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           +++ A EIL+E   +G+   I++++ LM         +   +L   M +  + P  +T N
Sbjct: 541 EMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 600

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           +L+   C  + L     +  DM S G+ P+  TY  L+    +  +++    L  + K  
Sbjct: 601 SLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK 660

Query: 439 GVIPNLVMFKCII-GMCSRR 457
           G   ++  +  +I G   R+
Sbjct: 661 GFSVSVSTYSVLIKGFLKRK 680



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 186/396 (46%), Gaps = 12/396 (3%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNP--TLSTFNMLMSVCASSKD---SEGAFQVLRLVQEA 121
           FF V      ++EA R F+ + N    LS  +  + +   SKD   +  A  V R   E 
Sbjct: 181 FFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEV 240

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G+  +   Y  +I    + G++     +   M   G  P+V +Y  +++G  + G++ K 
Sbjct: 241 GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKV 300

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
           +    +M+ K +KP+  ++ ++I    +   +  A +  +EM  +   + PD +    L+
Sbjct: 301 WKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ--GILPDTVVYTTLI 358

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKG 299
                 G +  A + +  +H  +I  TP+V  YT  I+   Q GD   A  ++ +M  KG
Sbjct: 359 DGFCKRGDIRAASKFFYEMHSRDI--TPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 416

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + PD V  + LI+    AG ++ AF +       G S  +++Y++L+       +   A 
Sbjct: 417 LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 476

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           EL   M  I L+P + T N+++  LC    + + ++++ + ++ GL  +T+TY+ L+ A 
Sbjct: 477 ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 536

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            +  +++    +L +    G+ P +V F  ++ G C
Sbjct: 537 CKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFC 572



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 175/378 (46%), Gaps = 7/378 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R  +++E  +   +M R+G+L    VY       CK +  I+ A +FF  + +    P
Sbjct: 326 LCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK-RGDIRAASKFFYEMHSRDITP 384

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T+  ++S      D   A ++   +   GL+ D   +T LI    K+G +   F V 
Sbjct: 385 DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 444

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           + M+ AG  PNV TY  LIDG  K G +  A      M    ++P+   +N+++    +S
Sbjct: 445 NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 504

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G ++ A  ++ E   E   ++ D +T   LM A   +G++D+A+E+ K +    ++ T  
Sbjct: 505 GNIEEAVKLVGEF--EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 562

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            + + +N     G  E    + + M  KG+ P+    ++L+        ++AA  I ++ 
Sbjct: 563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 622

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            ++G+     +Y +L+     A+N ++A  L++ MK      +VST + LI       + 
Sbjct: 623 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKF 682

Query: 391 PKTMEVLSDMKSLGLCPN 408
            +  EV   M+  GL  +
Sbjct: 683 LEAREVFDQMRREGLAAD 700



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 50/112 (44%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P  +TFN L+       + + A  + + +   G+  D K Y  L+    K+  +   + +
Sbjct: 594 PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFL 653

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           F EM   G   +V TY  LI G  K  +  +A   +  MR + +  D+ +F+
Sbjct: 654 FQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 705



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELY 362
           +VF   L+DF    G +  A  + ++  N G+ + + S +  +   S +      A+ ++
Sbjct: 179 DVFFQVLVDF----GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVF 234

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
                + +   V++ N +I  +C   ++ +   +L  M+  G  P+ I+YS ++    R 
Sbjct: 235 REFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRF 294

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            +++    L+   K  G+ PN  ++  IIG+  R
Sbjct: 295 GELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCR 328


>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 172/371 (46%), Gaps = 9/371 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L++        + A  +   ++E GL    K+YTT++    K G+V+    +
Sbjct: 228 PDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGL 287

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G    V+TY  LI G  KAG+V +A+  +  M  +  KPD V+ N LI   G+
Sbjct: 288 VQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGK 347

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-- 267
           +G +  A  +  EM  E     P+ +T   ++KA   +    RA E +    K    G  
Sbjct: 348 AGRLADAIKLFEEM--ESLQCTPNVVTYNTVIKALFESKA--RASEAFLWYEKMKENGVV 403

Query: 268 -TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            +   Y+I I+   +T   E A  + ++M +KG  P      +LI+  G A + EAA E+
Sbjct: 404 PSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANEL 463

Query: 327 LQEAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            QE + N G S   + Y+ ++          +A++L+  MK +   P V   NAL++ + 
Sbjct: 464 FQELRENCGYSSARV-YAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMV 522

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
                 +   +L  M+  G  P+  +++I+L    R    +  + + ++ K   + P++V
Sbjct: 523 RVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVV 582

Query: 446 MFKCIIGMCSR 456
            +  ++G  SR
Sbjct: 583 SYNTVLGCLSR 593



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 176/410 (42%), Gaps = 35/410 (8%)

Query: 89  NPTLST----FNMLMSVCASSKDSEGAFQVL------RLVQEA----------------- 121
           NP++ T    F  ++ +     D+E A +VL      RLV+E                  
Sbjct: 55  NPSVRTLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWA 114

Query: 122 ----GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
                 + D   Y  LI    ++G +  M++   EMV +           ++    KA  
Sbjct: 115 GKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKM 174

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           V KA   +  ++ +  KP    +N++I    Q G  ++  ++  EM  E   + PD +T 
Sbjct: 175 VNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCL-PDTVTY 233

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            AL+ A    G+ D A  ++  + +  +  T ++YT  +    + G  E A  +  +M +
Sbjct: 234 SALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKE 293

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           KG        + LI   G AGKVE A+ I      +G    ++  ++L+     A     
Sbjct: 294 KGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLAD 353

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEVLSDMKSLGLCPNTITYSILL 416
           A++L+E M+S++  P V T N +I AL +   +  +       MK  G+ P++ TYSIL+
Sbjct: 354 AIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILI 413

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTL 464
               + + VE  L+LL +  E G  P    +  +I     ++RYE A  L
Sbjct: 414 DGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANEL 463



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 183/402 (45%), Gaps = 10/402 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
           +Y+ LI    + GR    I L ++M+  GL    K+Y      +F + + +KA+      
Sbjct: 232 TYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEM 291

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +     T+ T+  L+     +   E A+ +   + + G K D  L   LI    K+G++
Sbjct: 292 KEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRL 351

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-GQVAKAFGAYGIMRSKNVKPDRVVFNA 202
               ++F EM +    PNV TY  +I    ++  + ++AF  Y  M+   V P    ++ 
Sbjct: 352 ADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSI 411

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    ++  V++A  +L EM+ +     P      +L+ A   A + + A E+++ + +
Sbjct: 412 LIDGFCKTNRVEKALLLLEEMDEK--GFAPCPAAYCSLINALGKAKRYEAANELFQELRE 469

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                +  VY + I    + G    A  ++++M K G  PD    +AL+      G  + 
Sbjct: 470 NCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDE 529

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  +L+  +  G +  + S++ ++   +     + A+E++  MK+ K+KP V + N ++ 
Sbjct: 530 AHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLG 589

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
            L       +  +++ +M S G   + ITYS +L A  + D+
Sbjct: 590 CLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDE 631



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 185/463 (39%), Gaps = 74/463 (15%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           +QF    GK  N+ HD +    +Y  LI       C+D        G+L           
Sbjct: 108 IQFFKWAGKRRNFEHDST----TYMALIH------CLD------EAGMLG---------- 141

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
              +  K I+E  R   ++    LS    ++ V   +K    A  +   ++    K    
Sbjct: 142 ---EMWKTIQEMVRSTCVIGPADLSE---IVKVLGKAKMVNKALSIFYQIKGRKCKPTSN 195

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
            Y ++I    + G  + + E+++EM N G   P+  TY ALI    K G+   A   +  
Sbjct: 196 TYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDE 255

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M+   + P   ++  ++    + G V++A  ++ EM                  K CA  
Sbjct: 256 MKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKE----------------KGCALT 299

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
                   VY              YT  I    + G  E A S++ +M K+G  PD V +
Sbjct: 300 --------VY-------------TYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLI 338

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMK 366
           + LI+  G AG++  A ++ +E ++   +  +++Y++++ A   +K    +A   YE MK
Sbjct: 339 NNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMK 398

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              + P+  T + LI   C  +++ K + +L +M   G  P    Y  L+ A  +    E
Sbjct: 399 ENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYE 458

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE 466
               L  + +E+    +  ++  +I   G C R  E     NE
Sbjct: 459 AANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNE 501


>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 172/371 (46%), Gaps = 9/371 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L++        + A  +   ++E GL    K+YTT++    K G+V+    +
Sbjct: 228 PDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGL 287

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G    V+TY  LI G  KAG+V +A+  +  M  +  KPD V+ N LI   G+
Sbjct: 288 VQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGK 347

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-- 267
           +G +  A  +  EM  E     P+ +T   ++KA   +    RA E +    K    G  
Sbjct: 348 AGRLADAIKLFEEM--ESLQCTPNVVTYNTVIKALFESKA--RASEAFLWYEKMKENGVV 403

Query: 268 -TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            +   Y+I I+   +T   E A  + ++M +KG  P      +LI+  G A + EAA E+
Sbjct: 404 PSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANEL 463

Query: 327 LQEAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            QE + N G S   + Y+ ++          +A++L+  MK +   P V   NAL++ + 
Sbjct: 464 FQELRENCGYSSARV-YAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMV 522

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
                 +   +L  M+  G  P+  +++I+L    R    +  + + ++ K   + P++V
Sbjct: 523 RVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVV 582

Query: 446 MFKCIIGMCSR 456
            +  ++G  SR
Sbjct: 583 SYNTVLGCLSR 593



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 176/410 (42%), Gaps = 35/410 (8%)

Query: 89  NPTLST----FNMLMSVCASSKDSEGAFQVL------RLVQEA----------------- 121
           NP++ T    F  ++ +     D+E A +VL      RLV+E                  
Sbjct: 55  NPSVRTLDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWA 114

Query: 122 ----GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
                 + D   Y  LI    ++G +  M++   EMV +           ++    KA  
Sbjct: 115 GKRRNFEHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKM 174

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           V KA   +  ++ +  KP    +N++I    Q G  ++  ++  EM  E   + PD +T 
Sbjct: 175 VNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCL-PDTVTY 233

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            AL+ A    G+ D A  ++  + +  +  T ++YT  +    + G  E A  +  +M +
Sbjct: 234 SALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKE 293

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           KG        + LI   G AGKVE A+ I      +G    ++  ++L+     A     
Sbjct: 294 KGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLAD 353

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEVLSDMKSLGLCPNTITYSILL 416
           A++L+E M+S++  P V T N +I AL +   +  +       MK  G+ P++ TYSIL+
Sbjct: 354 AIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILI 413

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTL 464
               + + VE  L+LL +  E G  P    +  +I     ++RYE A  L
Sbjct: 414 DGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANEL 463



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 183/402 (45%), Gaps = 10/402 (2%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
           +Y+ LI    + GR    I L ++M+  GL    K+Y      +F + + +KA+      
Sbjct: 232 TYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEM 291

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +     T+ T+  L+     +   E A+ +   + + G K D  L   LI    K+G++
Sbjct: 292 KEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRL 351

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA-GQVAKAFGAYGIMRSKNVKPDRVVFNA 202
               ++F EM +    PNV TY  +I    ++  + ++AF  Y  M+   V P    ++ 
Sbjct: 352 ADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSI 411

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    ++  V++A  +L EM+ +     P      +L+ A   A + + A E+++ + +
Sbjct: 412 LIDGFCKTNRVEKALLLLEEMDEK--GFAPCPAAYCSLINALGKAKRYEAANELFQELRE 469

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
                +  VY + I    + G    A  ++++M K G  PD    +AL+      G  + 
Sbjct: 470 NCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDE 529

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  +L+  +  G +  + S++ ++   +     + A+E++  MK+ K+KP V + N ++ 
Sbjct: 530 AHSLLRTMEENGCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLG 589

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
            L       +  +++ +M S G   + ITYS +L A  + D+
Sbjct: 590 CLSRAGMFEEAAKLMKEMNSKGFEYDLITYSSILEAVGKIDE 631



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 185/463 (39%), Gaps = 74/463 (15%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           +QF    GK  N+ HD +    +Y  LI       C+D        G+L           
Sbjct: 108 IQFFKWAGKRRNFEHDST----TYMALIH------CLD------EAGMLG---------- 141

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
              +  K I+E  R   ++    LS    ++ V   +K    A  +   ++    K    
Sbjct: 142 ---EMWKTIQEMVRSTCVIGPADLSE---IVKVLGKAKMVNKALSIFYQIKGRKCKPTSN 195

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
            Y ++I    + G  + + E+++EM N G   P+  TY ALI    K G+   A   +  
Sbjct: 196 TYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDE 255

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M+   + P   ++  ++    + G V++A  ++ EM                  K CA  
Sbjct: 256 MKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKE----------------KGCALT 299

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
                   VY              YT  I    + G  E A S++ +M K+G  PD V +
Sbjct: 300 --------VY-------------TYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLI 338

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMK 366
           + LI+  G AG++  A ++ +E ++   +  +++Y++++ A   +K    +A   YE MK
Sbjct: 339 NNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMK 398

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              + P+  T + LI   C  +++ K + +L +M   G  P    Y  L+ A  +    E
Sbjct: 399 ENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYE 458

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE 466
               L  + +E+    +  ++  +I   G C R  E     NE
Sbjct: 459 AANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNE 501


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 173/370 (46%), Gaps = 4/370 (1%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMF 147
           N ++  F+ L+     S+  E A Q LRLV++       C     L      + +    +
Sbjct: 152 NHSVLVFDALIIAYTDSEFIEDAIQCLRLVKKNNFSIPVCGCDYLLRRVMKLNQQPGHCW 211

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           E + E+++ G  PNV+ +  L+ G  K G V  A   +  +  + ++P  V FN LI+  
Sbjct: 212 EFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGY 271

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +S  V+  F + + M +E   + PD  T  AL+       +V+ A  ++  + +  +  
Sbjct: 272 CRSKNVEEGFVLKSVMESER--ISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVP 329

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               +T  I+   + G  + A   ++ M  +G+ PD +  +ALI+     G ++ A ++L
Sbjct: 330 NGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLL 389

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E    G     I++++LM  C    +   ALE+ + M    ++       ALI+ LC  
Sbjct: 390 NEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRD 449

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            ++     +L DM S G  P+  TY++++    +K DV++G  LL + + DG +P +V +
Sbjct: 450 GRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTY 509

Query: 448 KCII-GMCSR 456
             ++ G C +
Sbjct: 510 NALMNGFCKQ 519



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 152/341 (44%), Gaps = 9/341 (2%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           V + G   +  L+  L+    K G V     VF E+   G+ P+V ++  LI G  ++  
Sbjct: 217 VLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKN 276

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDH 234
           V + F    +M S+ + PD   ++ALI    +   V+ A   FD + EM      + P+ 
Sbjct: 277 VEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMG-----LVPNG 331

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T   L+      G++D A   ++++    I+     Y   IN   + GD + A  + ++
Sbjct: 332 VTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNE 391

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M   G  PD++  + L+D     G +++A EI      +GI +  +++++L+        
Sbjct: 392 MIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGR 451

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            + A  + + M S   KP   T   +I   C    +    ++L +M+  G  P  +TY+ 
Sbjct: 452 VRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNA 511

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           L+    ++  ++   MLL       V+PN + F  ++ G C
Sbjct: 512 LMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHC 552



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 125/287 (43%), Gaps = 16/287 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++ R+ E   L ++M   GL+     +       CK  K I  A R F+++ +   
Sbjct: 304 NGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGK-IDLALRNFEIMKDRGI 362

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+N L++      D + A ++L  +   G K D   +TTL+  C K G +D+  E
Sbjct: 363 RPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALE 422

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   MV  GIE +   + ALI G  + G+V  A      M S   KPD   +  +I    
Sbjct: 423 IKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFC 482

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G V     +L EM  +     P  +T  ALM      GQ+  A+ +   +   N++  
Sbjct: 483 KKGDVKMGAKLLKEMQRDGRV--PGVVTYNALMNGFCKQGQMKNAKMLLHAM--LNMEVV 538

Query: 269 PEVYTIAI---NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           P   T  I     C      +F   +++   +KG++ D    +AL++
Sbjct: 539 PNDITFNILLDGHCKHGSSVDF--KIFNG--EKGLVSDYASYTALVN 581



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 79/199 (39%), Gaps = 10/199 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +   L +YN LI    R G + E   LL +M   G    DK+      + C     +  A
Sbjct: 362 IRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGF-KPDKITFTTLMDGCCKDGDMDSA 420

Query: 81  FRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
                 +    +      F  L+S          A ++L+ +  AG K D   YT +I  
Sbjct: 421 LEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDC 480

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G V    ++  EM   G  P V TY AL++G  K GQ+  A      M +  V P+
Sbjct: 481 FCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPN 540

Query: 197 RVVFNALITA-CGQSGAVD 214
            + FN L+   C    +VD
Sbjct: 541 DITFNILLDGHCKHGSSVD 559


>gi|299117242|emb|CBN75204.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 662

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 174/418 (41%), Gaps = 46/418 (11%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N  +S  +S    + A ++L L++ A    D    T  IT C ++G+     ++   + 
Sbjct: 167 YNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAITACGRAGQWQKSLDLLDGLR 226

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G    +    A++D C K  Q  KA      M+   V PD   + A I AC Q    D
Sbjct: 227 ADGGRTTLRLMNAVVDACRKGRQWEKALEKLSEMKGFGVVPDDFTYTAAIAACRQGRQWD 286

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--- 271
           +A ++  EM      V   H  +   +  C  A Q +RA E+++ +         E+   
Sbjct: 287 KALELFREMPEAGVIVTSIHYNVA--IAICGEAKQPERAFEMFREMQGAGDGTRYEIDRV 344

Query: 272 -YTIAINCCSQTGDWEFACSVYDDMT--------------------------KKGVIPDE 304
            Y  AI  C + G W+ A  ++ DMT                             V  D 
Sbjct: 345 SYNTAIIACGEGGSWDLAFKLFRDMTHPPPPPTAAEAGGDAAAAAAAARRMGGGRVTADM 404

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQG-----------ISVGIISYSSLMGACSNAK 353
           +  + +ID     G  E A ++L+E    G           I   +++Y+S + AC  + 
Sbjct: 405 IAYNTIIDVCKKCGPWEEAVKLLREMSTPGNGGGGSGSGGVIIPNVVTYTSAIVACGRSG 464

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
           +W +ALEL+  MK++ ++P   + N  I+   +  +    + +L +M   G+ P+  TYS
Sbjct: 465 HWDEALELFREMKTVGIQPDAISYNTAISVSGEAGRWRDGLALLEEMPGEGIKPDHTTYS 524

Query: 414 ILLVACERKDDVEVGL-MLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHV 468
             ++ C R   +E GL +L +     G  PN++ +     +C  S+ + K R + E +
Sbjct: 525 TAILLCGRCGQLEAGLDVLRTTMPSHGATPNVLNYSAASVICAVSKEWGKVRGVVEEM 582



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 152/370 (41%), Gaps = 28/370 (7%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           TL   N ++  C   +  E A + L  ++  G+  D   YT  I  C +  + D   E+F
Sbjct: 233 TLRLMNAVVDACRKGRQWEKALEKLSEMKGFGVVPDDFTYTAAIAACRQGRQWDKALELF 292

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR----SKNVKPDRVVFNALITA 206
            EM  AG+      Y   I  C +A Q  +AF  +  M+        + DRV +N  I A
Sbjct: 293 REMPEAGVIVTSIHYNVAIAICGEAKQPERAFEMFREMQGAGDGTRYEIDRVSYNTAIIA 352

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           CG+ G+ D AF +  +M          H        A    G    A    + +    + 
Sbjct: 353 CGEGGSWDLAFKLFRDMT---------HPP--PPPTAAEAGGDAAAAAAAARRMGGGRVT 401

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-----------VIPDEVFLSALIDFAG 315
                Y   I+ C + G WE A  +  +M+  G           +IP+ V  ++ I   G
Sbjct: 402 ADMIAYNTIIDVCKKCGPWEEAVKLLREMSTPGNGGGGSGSGGVIIPNVVTYTSAIVACG 461

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            +G  + A E+ +E K  GI    ISY++ +     A  W+  L L E M    +KP  +
Sbjct: 462 RSGHWDEALELFREMKTVGIQPDAISYNTAISVSGEAGRWRDGLALLEEMPGEGIKPDHT 521

Query: 376 TMNALITALCDGDQLPKTMEVL-SDMKSLGLCPNTITYSILLVACE-RKDDVEVGLMLLS 433
           T +  I       QL   ++VL + M S G  PN + YS   V C   K+  +V  ++  
Sbjct: 522 TYSTAILLCGRCGQLEAGLDVLRTTMPSHGATPNVLNYSAASVICAVSKEWGKVRGVVEE 581

Query: 434 QAKEDGVIPN 443
            A E G+ PN
Sbjct: 582 MAVERGLSPN 591



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 136/338 (40%), Gaps = 49/338 (14%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           +E     Y A I   +  G+  +A     +MR+ +  PD     A ITACG++G   ++ 
Sbjct: 160 LEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAITACGRAGQWQKSL 219

Query: 218 DVLAEMNAEVHPVDPDHITI---GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           D+L  + A     D    T+    A++ AC    Q ++A E    +  + +      YT 
Sbjct: 220 DLLDGLRA-----DGGRTTLRLMNAVVDACRKGRQWEKALEKLSEMKGFGVVPDDFTYTA 274

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
           AI  C Q   W+ A  ++ +M + GVI   +  +  I   G A + E AFE+ +E +  G
Sbjct: 275 AIAACRQGRQWDKALELFREMPEAGVIVTSIHYNVAIAICGEAKQPERAFEMFREMQGAG 334

Query: 335 ----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM------------- 377
                 +  +SY++ + AC    +W  A +L+  M      PT +               
Sbjct: 335 DGTRYEIDRVSYNTAIIACGEGGSWDLAFKLFRDMTHPPPPPTAAEAGGDAAAAAAAARR 394

Query: 378 -------------NALITALCDGDQLPKTMEVLSDMKSLG-----------LCPNTITYS 413
                        N +I          + +++L +M + G           + PN +TY+
Sbjct: 395 MGGGRVTADMIAYNTIIDVCKKCGPWEEAVKLLREMSTPGNGGGGSGSGGVIIPNVVTYT 454

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             +VAC R    +  L L  + K  G+ P+ + +   I
Sbjct: 455 SAIVACGRSGHWDEALELFREMKTVGIQPDAISYNTAI 492



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 98/241 (40%), Gaps = 14/241 (5%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAG-----------LKADCKLYTTLITTCAKSGKV 143
           +N ++ VC      E A ++LR +   G           +  +   YT+ I  C +SG  
Sbjct: 407 YNTIIDVCKKCGPWEEAVKLLREMSTPGNGGGGSGSGGVIIPNVVTYTSAIVACGRSGHW 466

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   E+F EM   GI+P+  +Y   I    +AG+          M  + +KPD   ++  
Sbjct: 467 DEALELFREMKTVGIQPDAISYNTAISVSGEAGRWRDGLALLEEMPGEGIKPDHTTYSTA 526

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHK 262
           I  CG+ G ++   DVL       H   P+ +   A    CA + +  + R V  +M  +
Sbjct: 527 ILLCGRCGQLEAGLDVL-RTTMPSHGATPNVLNYSAASVICAVSKEWGKVRGVVEEMAVE 585

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVE 321
             +       T  +    +TG WE      + + + G++P D     A +  A   GK +
Sbjct: 586 RGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLEEGGILPKDPEIGQAAVTAARTCGKDQ 645

Query: 322 A 322
           A
Sbjct: 646 A 646



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 71/183 (38%), Gaps = 16/183 (8%)

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---------------TLSTFNMLMSVCAS 104
           D + +    +VCK     +EA +  + +  P                + T+   +  C  
Sbjct: 403 DMIAYNTIIDVCKKCGPWEEAVKLLREMSTPGNGGGGSGSGGVIIPNVVTYTSAIVACGR 462

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164
           S   + A ++ R ++  G++ D   Y T I+   ++G+      +  EM   GI+P+  T
Sbjct: 463 SGHWDEALELFREMKTVGIQPDAISYNTAISVSGEAGRWRDGLALLEEMPGEGIKPDHTT 522

Query: 165 YGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           Y   I  C + GQ+          M S    P+ + ++A    C  S    +   V+ EM
Sbjct: 523 YSTAILLCGRCGQLEAGLDVLRTTMPSHGATPNVLNYSAASVICAVSKEWGKVRGVVEEM 582

Query: 224 NAE 226
             E
Sbjct: 583 AVE 585


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 206/434 (47%), Gaps = 25/434 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N   + G++ +  +LL++M+ +G+  MD + H+        +  I EA   FK +    +
Sbjct: 119 NGFCKAGQVDQAFELLDEMKERGV-KMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECS 177

Query: 90  PTLSTFNMLMS-VCASSKDSEGA--FQVLRLVQEA--GLKADCKLYTTLITTCAKSGKVD 144
           P + T+N +++ +C +++  E    F  +    EA  G + D   Y+T+I    K+ +VD
Sbjct: 178 PNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVD 237

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
             +E F  M   G  PNV TY +LIDG  K  + ++       M+ K    + + FNA++
Sbjct: 238 KAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAML 297

Query: 205 TACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            A  ++   ++A   F+ L +   +     P+ +T    +     AG+VD A  +  ++ 
Sbjct: 298 HALWKNDEQEKACQFFERLLKSGKK-----PNVVTYNVAVHGLCKAGRVDEAYRI--LLE 350

Query: 262 KYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAG 318
               K TP+V  Y+  I+   + G  + A  V+  M     IP  V F++ L  F+ H  
Sbjct: 351 MVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHK- 409

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           K   AF + ++  N G   G+ +Y+ LM     A + + ALE+Y  MK  K +P  +T  
Sbjct: 410 KSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYA 469

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437
            LI  LC   ++ +  E L  M++  + PN  I ++++ V C ++ +V+    +L    E
Sbjct: 470 PLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLC-KQGEVDEACSVLDNVVE 528

Query: 438 DGVIPNLVMFKCII 451
            G  P    FK ++
Sbjct: 529 VGCQPLGETFKILV 542



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 182/387 (47%), Gaps = 12/387 (3%)

Query: 35  LIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90
           L +  R SEC++LL  M+ KG    ++D + + HA + N  + +KA +   R  K    P
Sbjct: 265 LCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKND-EQEKACQFFERLLKSGKKP 323

Query: 91  TLSTFNM-LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            + T+N+ +  +C + +  E A+++L  + E+ +  D   Y+++I    K+G++D   +V
Sbjct: 324 NVVTYNVAVHGLCKAGRVDE-AYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDV 382

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M+     P+  T+  L+ G ++  +  +AF  +  M +    P    +N L+     
Sbjct: 383 FTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCG 442

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           + +V+ A ++  +M  +     PD  T   L++    A +VD A+E   ++   N+    
Sbjct: 443 ADSVESALEIYHKMKRKKR--QPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 500

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            +    +    + G+ + ACSV D++ + G  P       L++      K EAA ++L  
Sbjct: 501 AICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLL-- 558

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            ++ G      +YS  +     A    +A+E+ E M    ++P   T  A++ +LC  D+
Sbjct: 559 -RSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDR 617

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
           +   +     M S G  P  +TY++L+
Sbjct: 618 VESAIAEFEKMASRGCAPGLVTYTLLI 644



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/428 (23%), Positives = 180/428 (42%), Gaps = 57/428 (13%)

Query: 65  ARFFNVCKSQKAIKEAFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
           A   N     K  +EA R  K        PN  + T  ++   C + +  + AF++L  +
Sbjct: 80  AVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYT-TVINGFCKAGQVDQ-AFELLDEM 137

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           +E G+K D  L++TLI    + G++D   E F  M      PNV TY  +++G  KA ++
Sbjct: 138 KERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM-GEECSPNVITYNTVVNGLCKANRI 196

Query: 179 AKAFGAYGIMR-----SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
            +A   +  M      S   +PD + ++ +I A  ++  VD+A++    M A      P+
Sbjct: 197 DEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAV--GCAPN 254

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACS 290
            +T  +L+       +VDR  E  +++     KG       +   ++   +  + E AC 
Sbjct: 255 VVTYSSLIDGLC---KVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQ 311

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GAC 349
            ++ + K G  P+ V  +  +     AG+V+ A+ IL E     ++  +I+YSS++ G C
Sbjct: 312 FFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFC 371

Query: 350 ----------------------------------SNAKNWQKALELYEHMKSIKLKPTVS 375
                                             S  K  ++A  ++E M +    P + 
Sbjct: 372 KAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQ 431

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N L+  +C  D +   +E+   MK     P+  TY+ L+    R   V+     L   
Sbjct: 432 TYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVM 491

Query: 436 KEDGVIPN 443
           + D V+PN
Sbjct: 492 EADNVVPN 499



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 102/463 (22%), Positives = 193/463 (41%), Gaps = 48/463 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLV 87
           N L +  RI E ++L +DME++       + D + ++   + +CK+Q+ + +A+ +FK +
Sbjct: 188 NGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQR-VDKAYEYFKRM 246

Query: 88  PN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                 P + T++ L+  +C   + SE   ++L  ++E G   +   +  ++    K+ +
Sbjct: 247 RAVGCAPNVVTYSSLIDGLCKVDRPSE-CLELLLHMKEKGFGINIIDFNAMLHALWKNDE 305

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            +   + F  ++ +G +PNV TY   + G  KAG+V +A+     M    V PD + +++
Sbjct: 306 QEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSS 365

Query: 203 LITACGQSGAVDRAFDVLAEMNAE---VHPVD---------------------------- 231
           +I    ++G +D+A DV   M       HPV                             
Sbjct: 366 IIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAG 425

Query: 232 --PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
             P   T   LM     A  V+ A E+Y  + +   +     Y   I C  +    + A 
Sbjct: 426 FIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAK 485

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
              D M    V+P+     AL++     G+V+ A  +L      G      ++  L+   
Sbjct: 486 EFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEEL 545

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
              K W+ A +L   ++S       +T +  +  +C   +  + +EV+  M   G+ P+ 
Sbjct: 546 YLRKKWEAASKL---LRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDE 602

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            TY  +L +    D VE  +    +    G  P LV +  +IG
Sbjct: 603 GTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIG 645



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 88/221 (39%), Gaps = 10/221 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L R  R+ E  + L+ ME   ++    + HA    +CK Q  + EA      V      P
Sbjct: 475 LCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCK-QGEVDEACSVLDNVVEVGCQP 533

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              TF +L+      K  E A ++LR     G  AD   Y+  +    K+GK D   EV 
Sbjct: 534 LGETFKILVEELYLRKKWEAASKLLR---SPGFVADAATYSLCVAEICKAGKPDEAVEVI 590

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +MV  G+ P+  TY A++       +V  A   +  M S+   P  V +  LI     +
Sbjct: 591 EQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSA 650

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
              D AF +   M A      P   T+  L     +AG  D
Sbjct: 651 DMADEAFRIFEAMVAA--GFTPQAQTMRTLSSCLRDAGYQD 689


>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 755

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 157/318 (49%), Gaps = 5/318 (1%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           F  V K ++AIK     F+L PN  +  ++  +S   S+ D   A  + + + E GL  D
Sbjct: 418 FCKVGKPEEAIK-LIHSFRLRPN--IFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPD 474

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
           C  YTT+I      G+ D  F+ F  ++ +G  P++ TY  LI  C+K G ++ A   + 
Sbjct: 475 CYCYTTMIDGYCTLGRTDKAFQFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFR 534

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           IM+++ + PD V +N L+   G++  +++ F+++ EM +    + PD  T   L+ +   
Sbjct: 535 IMKTEGLHPDVVTYNNLMYGYGKTHQLNKVFELIDEMRSA--GISPDVATYNILIHSMVV 592

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G VD A E+   + +     +   +T  I   S+ GD++ A  ++  M    V PD V 
Sbjct: 593 RGYVDEANEIISELIRRGFVPSALAFTDVIGGLSKRGDFQEAFILWFYMADLRVKPDVVT 652

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            SAL+     A ++E A  +  +  + G+   ++ Y++L+    +  + +KA EL   M 
Sbjct: 653 CSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMV 712

Query: 367 SIKLKPTVSTMNALITAL 384
              + P  ST +AL+  L
Sbjct: 713 QRGMLPNESTHHALVVGL 730



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 167/365 (45%), Gaps = 5/365 (1%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           + F ML+  C   +  + A ++   + + G+     +  +L+    ++  ++   E    
Sbjct: 269 TVFCMLIDCCIKERKVDMALKLTYKIDQFGIFPSRGVCISLVEEILRAHGLELAREFVEH 328

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M++ G   N       I      G   K +     M+   ++PD V F   I    ++G 
Sbjct: 329 MLSRGRHLNAALLSLFIRKYCSDGYFDKGWELLMGMKDYGIRPDIVAFTVFIDKLCKAGF 388

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +  A  VL ++  ++  +  D +++ +++      G   +  E  K+IH + ++    VY
Sbjct: 389 LREATSVLFKL--KLFGISQDSVSVSSVIDGFCKVG---KPEEAIKLIHSFRLRPNIFVY 443

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +  ++    TGD   A +++ ++ + G++PD    + +ID     G+ + AF+       
Sbjct: 444 SSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAFQFFGALLK 503

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G    +I+Y+ L+GACS   +   A  ++  MK+  L P V T N L+       QL K
Sbjct: 504 SGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGYGKTHQLNK 563

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
             E++ +M+S G+ P+  TY+IL+ +   +  V+    ++S+    G +P+ + F  +IG
Sbjct: 564 VFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFTDVIG 623

Query: 453 MCSRR 457
             S+R
Sbjct: 624 GLSKR 628



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 159/365 (43%), Gaps = 42/365 (11%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           + ++L+    L+ +  +Y++ ++    +G +     +F E+   G+ P+ + Y  +IDG 
Sbjct: 426 EAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGY 485

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
              G+  KAF  +G +      P  + +  LI AC + G++  A  V   M  E   + P
Sbjct: 486 CTLGRTDKAFQFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTE--GLHP 543

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           D +T   LM       Q+++   V+++I                                
Sbjct: 544 DVVTYNNLMYGYGKTHQLNK---VFELI-------------------------------- 568

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
           D+M   G+ PD    + LI      G V+ A EI+ E   +G     ++++ ++G  S  
Sbjct: 569 DEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFTDVIGGLSKR 628

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            ++Q+A  L+ +M  +++KP V T +AL+   C   ++ K + +   +   GL P+ + Y
Sbjct: 629 GDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLY 688

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCSRRY----EKARTLNEH 467
           + L+       D+E    L+    + G++PN       ++G+  +R+    E A  L E 
Sbjct: 689 NTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVVGLEGKRFMNSEEHASMLLEE 748

Query: 468 VLSFN 472
           ++  N
Sbjct: 749 IVVAN 753


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 200/441 (45%), Gaps = 14/441 (3%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  L +YN LI+    + +  +   LL  M   GL + D + +    N       + +A
Sbjct: 145 MSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGL-NPDILSYGTLINALAKSGNLLDA 203

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLIT 135
              F  +     NP +  +N+L+       D   A ++  RL+ E+ +    + Y  +I 
Sbjct: 204 VELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMIN 263

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K GK+D   E+++ M      P++ T+ ++I G +KAG    A   +  M    + P
Sbjct: 264 GLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSP 323

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D   +NA+++   ++G +++ F++   M+        + ++   L++   +  +V++A  
Sbjct: 324 DVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCC---NIVSYNMLIQGLLDNKKVEQAIC 380

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
            ++++H+  +K     Y + IN   + G    A  + ++   +G   D    S+++    
Sbjct: 381 YWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLC 440

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G +E A E++ + K     +    ++SL+     A   ++A+ +   MKS    PTV 
Sbjct: 441 KKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVV 500

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           + N +I  LC  ++       L +M   GL P+ ITYS+L+    R + V++ L L  Q 
Sbjct: 501 SYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQC 560

Query: 436 KEDGVIPNLVMFKCII-GMCS 455
               + P+L M   II G+C+
Sbjct: 561 INKRLKPDLQMHNIIIHGLCT 581



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/493 (20%), Positives = 214/493 (43%), Gaps = 47/493 (9%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV 62
           + GK +L + + NG +     D+       N L + G + + ++L ++M  +G+      
Sbjct: 166 EKGKGLLTWMFENGLNP----DILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMC 221

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRL 117
           Y+       +    +K    + +L+      P++ T+N++++ +C   K  E + ++   
Sbjct: 222 YNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDE-SMEMWNR 280

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +++     D   ++++I   +K+G  +A  +VF EM+ +G+ P+V TY A++ G  + G+
Sbjct: 281 MKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGK 340

Query: 178 VAKAFGAYGIMRSKN----------------------------------VKPDRVVFNAL 203
           + K F  + +M   N                                  +K D   +  L
Sbjct: 341 LNKCFELWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLL 400

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    ++G +++A  +L E  AE    D D     +++      G +++A E+   + K 
Sbjct: 401 INGLCKNGYLNKALRILEE--AENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKN 458

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             K    V+   IN   +    E A SV  +M  K   P  V  + +I+    A +   A
Sbjct: 459 RRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDA 518

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           +  L+E   +G+   +I+YS L+      +    AL L+    + +LKP +   N +I  
Sbjct: 519 YLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHG 578

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   ++   +E+ + M+ +   P+ +T++ ++    +  D    L +  +  E G+ P+
Sbjct: 579 LCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPD 638

Query: 444 LVMFKCII-GMCS 455
           ++ +     G+CS
Sbjct: 639 IISYNITFKGLCS 651



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 176/376 (46%), Gaps = 12/376 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP + +FN +++    S     A       Q AG+  + + Y  LI    K  + +    
Sbjct: 111 NPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKG 170

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +   M   G+ P++ +YG LI+  AK+G +  A   +  M  + V PD + +N LI    
Sbjct: 171 LLTWMFENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFL 230

Query: 209 QSGAVDRAFDVLAEMNAE--VHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           + G   +A ++   +  E  V+P V+  +I I  L K     G++D + E++  + K   
Sbjct: 231 RKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCK----LGKLDESMEMWNRMKKN-- 284

Query: 266 KGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           + +P+++T +  I+  S+ G++  A  V+ +M + G+ PD    +A++      GK+   
Sbjct: 285 EKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKC 344

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
           FE L    ++     I+SY+ L+    + K  ++A+  ++ +    LK   +T   LI  
Sbjct: 345 FE-LWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLING 403

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC    L K + +L + ++ G   +T  YS ++    +K  +E  + L+ Q K++    N
Sbjct: 404 LCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLN 463

Query: 444 LVMFKCIIGMCSRRYE 459
             +F  +I    R ++
Sbjct: 464 SHVFNSLINGYVRAFK 479



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/387 (21%), Positives = 172/387 (44%), Gaps = 6/387 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT--- 91
           L + G  +    + ++M   GL    + Y+A    + ++ K + + F  + ++       
Sbjct: 300 LSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGK-LNKCFELWNVMSKNNCCN 358

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + ++NML+     +K  E A    +L+ E GLKAD   Y  LI    K+G ++    +  
Sbjct: 359 IVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILE 418

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           E  N G + +   Y +++ G  K G + +A      M+    K +  VFN+LI    ++ 
Sbjct: 419 EAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAF 478

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            ++ A  VL EM ++     P  ++   ++     A +   A    K + +  +K     
Sbjct: 479 KLEEAISVLREMKSK--DCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKPDMIT 536

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y++ I+   +    + A +++     K + PD    + +I     A KV+ A EI  + +
Sbjct: 537 YSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMR 596

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
                  +++++++M     A +  +AL++++ +    L+P + + N     LC   ++ 
Sbjct: 597 QVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVS 656

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVA 418
             +E L D    G+ PN  T+++L+ A
Sbjct: 657 DAIEFLYDALDRGILPNAPTWNVLVRA 683



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 166/377 (44%), Gaps = 18/377 (4%)

Query: 25  VSEQLHSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN     L R G++++C +L   M +    ++  V +          K +++A
Sbjct: 321 LSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNI--VSYNMLIQGLLDNKKVEQA 378

Query: 81  FRFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             +++L+    L    +T+ +L++    +     A ++L   +  G   D   Y++++  
Sbjct: 379 ICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHG 438

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G ++   E+ H+M     + N H + +LI+G  +A ++ +A      M+SK+  P 
Sbjct: 439 LCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPT 498

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            V +N +I    ++     A+  L EM  E   + PD IT   L+       +VD A  +
Sbjct: 499 VVSYNTIINGLCKAERFSDAYLSLKEMLEE--GLKPDMITYSLLIDGLCRGEKVDMALNL 556

Query: 257 YKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           +       +K   +++ I I+  C +Q  D   A  ++  M +   +PD V  + +++  
Sbjct: 557 WHQCINKRLKPDLQMHNIIIHGLCTAQKVD--VALEIFTQMRQVNCVPDLVTHNTIMEGL 614

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYS-SLMGACSNAKNWQKALELYEHMKSIKLKPT 373
             AG    A +I       G+   IISY+ +  G CS A+       LY+ +    L P 
Sbjct: 615 YKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGIL-PN 673

Query: 374 VSTMNALITALCDGDQL 390
             T N L+ A+ D   L
Sbjct: 674 APTWNVLVRAVVDDKPL 690


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/496 (24%), Positives = 208/496 (41%), Gaps = 22/496 (4%)

Query: 71  CKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           CKS K   E+  F + + N    P +     L+    + K  E A QV+ ++++ G K D
Sbjct: 88  CKSAK-YDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHG-KPD 145

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y  +I+   K+ +VD   +V   M   G EP+V TY  LI      G++  A     
Sbjct: 146 VFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMD 205

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            +   N KP  + +  LI A    G +D A  +L EM +    + PD  T   ++     
Sbjct: 206 QLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLS--RGLRPDRYTYNVVVNGMCK 263

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G +DRA E    I K         Y I +      G WE+   +  DM  KG  P+ + 
Sbjct: 264 EGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPIT 323

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            S LI      GK++ A  +L+  K + ++    SY  L+ A         A+E  + M 
Sbjct: 324 YSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMI 383

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           S    P + + N+++ +LC      + + +   +  +G  PN  +Y+ L  A     D  
Sbjct: 384 SGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKI 443

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR--PQIENKWTS 484
             L ++ +   +G+ P+ + +  +I    R     + +   V  F S +  P + +  T 
Sbjct: 444 RALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTV 503

Query: 485 LALMVYREAIVAGTIPTVEVVSKVL--GCLQLPYNADIRERLVENLGVSA---DALKRSN 539
           L  +   + I    I  +EV++ ++  GCL    N      L++ +G +    DA++ +N
Sbjct: 504 LLGLCKVQRI----IDAIEVLAAMVNEGCLP---NETTYTLLIQGIGFAGWRYDAMELAN 556

Query: 540 LCSLIDGFGEYDPRAF 555
           L   +D   E   + F
Sbjct: 557 LLVNMDAISEDSFKRF 572



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 148/340 (43%), Gaps = 4/340 (1%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           D     TL  +C KS K D        MVN G +P+V     LI G     ++ KA    
Sbjct: 77  DTNFMKTLNRSC-KSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVM 135

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
            I+  K+ KPD   +NA+I+   ++  VD A  VL  M       +PD +T   L+    
Sbjct: 136 EILE-KHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKK--RGFEPDVVTYNILIGNFC 192

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
             G++D A  V   + K N K T   YTI I      G  + A  + D+M  +G+ PD  
Sbjct: 193 GRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRY 252

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + +++     G ++ AFE L      G   G+ +Y+ L+    N   W+   +L   M
Sbjct: 253 TYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDM 312

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
                +P   T + LITALC   ++ +   VL  MK   L P+  +Y  L+ A  R+  V
Sbjct: 313 LVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKV 372

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
           ++ +  L      G +P+++ +  I+    +       LN
Sbjct: 373 DLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALN 412



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 166/402 (41%), Gaps = 72/402 (17%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           I QG I E + LL++M  +GL                                 P   T+
Sbjct: 227 ITQGGIDEAMKLLDEMLSRGL--------------------------------RPDRYTY 254

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N++++        + AF+ L  + + G  A    Y  L+      GK +   ++  +M+ 
Sbjct: 255 NVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLV 314

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            G EPN  TY  LI    + G++ +A     +M+ K + PD   ++ LI+A  + G VD 
Sbjct: 315 KGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDL 374

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
           A + L +M +  H   PD ++  +++ +    G  D A  +++ + +         Y   
Sbjct: 375 AIEFLDDMISGGHL--PDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTL 432

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
                 +GD   A  +  +M   G+ PDE+  ++LI      G V+ A E+L        
Sbjct: 433 FGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELL-------- 484

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
                                  ++++E   S K +PTV + N ++  LC   ++   +E
Sbjct: 485 -----------------------VDMFE---SEKCQPTVISYNTVLLGLCKVQRIIDAIE 518

Query: 396 VLSDMKSLGLCPNTITYSILL----VACERKDDVEVGLMLLS 433
           VL+ M + G  PN  TY++L+     A  R D +E+  +L++
Sbjct: 519 VLAAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMELANLLVN 560



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/253 (20%), Positives = 94/253 (37%), Gaps = 34/253 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R G+I E  ++L+ M+ K L                                 P   +
Sbjct: 331 LCRDGKIDEAKNVLKVMKEKALA--------------------------------PDGYS 358

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           ++ L+S        + A + L  +   G   D   Y +++ +  K+G  D    +F ++ 
Sbjct: 359 YDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLG 418

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
             G  PN  +Y  L      +G   +A G    M S  + PD + +N+LI+   + G VD
Sbjct: 419 EVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVD 478

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           +A ++L +M  E     P  I+   ++       ++  A EV   +           YT+
Sbjct: 479 QAIELLVDM-FESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTL 537

Query: 275 AINCCSQTGDWEF 287
            I      G W +
Sbjct: 538 LIQGIGFAG-WRY 549



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 88/195 (45%), Gaps = 4/195 (2%)

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             Y+ + T  + T+  +C  ++  ++ +      M  +G  PD +  + LI    +  K+
Sbjct: 71  QDYDFRDTNFMKTLNRSC--KSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKI 128

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           E A ++++  +  G    + +Y++++     A     A ++ + MK    +P V T N L
Sbjct: 129 EKAIQVMEILEKHG-KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNIL 187

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I   C   +L   + V+  +      P  ITY+IL+ A   +  ++  + LL +    G+
Sbjct: 188 IGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGL 247

Query: 441 IPNLVMFKCII-GMC 454
            P+   +  ++ GMC
Sbjct: 248 RPDRYTYNVVVNGMC 262



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 10/191 (5%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +SY+ LI    R+G++   I+ L+DM   G L     Y++   ++CK+  A  EA   F+
Sbjct: 357 YSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNA-DEALNIFE 415

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P   ++N L     SS D   A  ++  +   G+  D   Y +LI+   + G
Sbjct: 416 KLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDG 475

Query: 142 KVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            VD   E+  +M  +   +P V +Y  ++ G  K  ++  A      M ++   P+   +
Sbjct: 476 LVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMVNEGCLPNETTY 535

Query: 201 NALITACGQSG 211
             LI   G +G
Sbjct: 536 TLLIQGIGFAG 546


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 182/400 (45%), Gaps = 42/400 (10%)

Query: 70  VCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           +CK Q   K       +V N   P   T+N ++    SS+  + A   L+ ++  G++ D
Sbjct: 241 LCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPD 300

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y +L+    K+G+     ++F  M   G+EP++ TY  L+ G A  G + +      
Sbjct: 301 VVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLD 360

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           +M    + PD  VFN LI A  +   VD A  V ++M    H ++P+ +T GA++     
Sbjct: 361 LMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQ--HGLNPNVVTYGAVIGILCK 418

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           +G VD A     M++                              ++ M  +G+ P+ + 
Sbjct: 419 SGSVDDA-----MLY------------------------------FEQMIDEGLTPNIIV 443

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            ++LI       K + A E++ E  ++GI +  I ++S++ +        ++ +L++ M 
Sbjct: 444 YTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMV 503

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
            I +KP V T + LI   C   ++ +  ++LS M S+G+ P+ +TY+ L+    R   ++
Sbjct: 504 RIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMD 563

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 464
             L L  +    GV PN++ +  I+     +RR   A+ L
Sbjct: 564 DALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 199/476 (41%), Gaps = 60/476 (12%)

Query: 23  HDVSEQLHSYNRLIRQG--RISECID----LLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           H  +  +  YNR+ R G  +++  +     L+    R G LD+     A   NV      
Sbjct: 63  HSPAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLG---FAALGNV------ 113

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +K+ FR   +   P      +L  +CA  + S+    VLR + E     D    T L+  
Sbjct: 114 VKKGFRVEAITFTP------LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKG 167

Query: 137 CAKSGKVDAMFEVFHEMVN---AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
                +     E+ H M +    G  P+V +Y  +I+G  K G   KA+  Y  M  + +
Sbjct: 168 LCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRI 227

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEM------------NAEVH------------- 228
            PD V ++++I A  +  A+D+A +VL  M            N+ +H             
Sbjct: 228 SPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIG 287

Query: 229 --------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
                    V+PD +T  +LM      G+   AR+++  + K  ++     Y   +   +
Sbjct: 288 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYA 347

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
             G      ++ D M + G+ PD    + LI       KV+ A  +  + +  G++  ++
Sbjct: 348 TKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVV 407

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +Y +++G    + +   A+  +E M    L P +    +LI +LC  D+  K  E++ +M
Sbjct: 408 TYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEM 467

Query: 401 KSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
              G+C NTI + SI+   C+    +E    L       GV PN++ +  +I G C
Sbjct: 468 LDRGICLNTIFFNSIIHSHCKEGRVIE-SEKLFDLMVRIGVKPNVITYSTLIDGYC 522



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 176/398 (44%), Gaps = 27/398 (6%)

Query: 150 FHEMVNAG---IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           ++ M  AG   + P VHTYG LI  C +AG++   F A G +  K  + + + F  L+  
Sbjct: 72  YNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKG 131

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                    A D++     E+  + PD  +   L+K   +  +   A E+  M+      
Sbjct: 132 LCADKRTSDAMDIVLRRMTELSCM-PDVFSCTILLKGLCDENRSQEALELLHMMADDRGG 190

Query: 267 GT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G+ P+V  YT  IN   + GD + A S Y +M  + + PD V  S++I        ++ A
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E+L      G+    ++Y+S++    +++  ++A+   + M+S  ++P V T N+L+  
Sbjct: 251 MEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDY 310

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   +  +  ++   M   GL P+  TY  LL     K  +     LL     +G+ P+
Sbjct: 311 LCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPD 370

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN--------------KWTSL--AL 487
             +F  +I  C+  Y K   ++E +L F+  R    N              K  S+  A+
Sbjct: 371 HHVFNILI--CA--YAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAM 426

Query: 488 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 525
           + + + I  G  P + V + ++  L +    D  E L+
Sbjct: 427 LYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELI 464



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/447 (21%), Positives = 189/447 (42%), Gaps = 42/447 (9%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           + + +++L  M + G++     Y++     C S++  KEA  F K + +    P + T+N
Sbjct: 247 MDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQP-KEAIGFLKKMRSDGVEPDVVTYN 305

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
            LM     +  S  A ++   + + GL+ D   Y TL+   A  G +  M  +   MV  
Sbjct: 306 SLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRN 365

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           GI P+ H +  LI   AK  +V +A   +  MR   + P+ V + A+I    +SG+VD A
Sbjct: 366 GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDA 425

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKA----------------------CANA------- 247
                +M  E   + P+ I   +L+ +                      C N        
Sbjct: 426 MLYFEQMIDE--GLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSII 483

Query: 248 ------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
                 G+V  + +++ ++ +  +K     Y+  I+     G  + A  +   M   G+ 
Sbjct: 484 HSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMK 543

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD V  + LI+      +++ A  + +E  + G+S  II+Y+ ++    + +    A EL
Sbjct: 544 PDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           Y  +     +  +ST N ++  LC  +   + + +  ++    L   T T++I++ A  +
Sbjct: 604 YVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLK 663

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFK 448
               +    L      +G++PN   ++
Sbjct: 664 VGRNDEAKDLFVAFSSNGLVPNYWTYR 690



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 174/397 (43%), Gaps = 19/397 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    + GR +E   + + M ++GL + D   +        ++ A+ E      L
Sbjct: 303 TYNSLMDYLCKNGRSTEARKIFDSMTKRGL-EPDIATYCTLLQGYATKGALVEMHALLDL 361

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P    FN+L+   A  +  + A  V   +++ GL  +   Y  +I    KSG 
Sbjct: 362 MVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGS 421

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD     F +M++ G+ PN+  Y +LI       +  KA      M  + +  + + FN+
Sbjct: 422 VDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNS 481

Query: 203 LITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +I +  + G V   ++ FD++  +      V P+ IT   L+     AG++D A ++   
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMVRIG-----VKPNVITYSTLIDGYCLAGKMDEATKLLSS 536

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +    +K     Y   IN   +    + A +++ +M   GV P+ +  + ++    H  +
Sbjct: 537 MFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 596

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
             AA E+       G  + + +Y+ ++ G C N     +AL +++++    L+    T N
Sbjct: 597 TAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLT-DEALRMFQNLCLTDLQLETRTFN 655

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +I AL    +  +  ++     S GL PN  TY ++
Sbjct: 656 IMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLM 692


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 191/403 (47%), Gaps = 16/403 (3%)

Query: 77   IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            IKEA     L+      P + +++ +++      + +  ++++ +++  GLK +  +Y +
Sbjct: 705  IKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGS 764

Query: 133  LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
            +I    +  K+    E F EM+  GI P+   Y  LIDG  K G +  A   +  M S++
Sbjct: 765  IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 824

Query: 193  VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
            + PD + + A+I+   Q G +  A  +  EM  +   ++PD +T   L+     AG +  
Sbjct: 825  ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCK--GLEPDSVTFTELINGYCKAGHMKD 882

Query: 253  AREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
            A  V+   H      +P V  YT  I+   + GD + A  +  +M K G+ P+    +++
Sbjct: 883  AFRVHN--HMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 940

Query: 311  IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
            ++    +G +E A +++ E +  G++   ++Y++LM A   +    KA E+ + M    L
Sbjct: 941  VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 1000

Query: 371  KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 430
            +PT+ T N L+   C    L    ++L+ M + G+ PN  T++ L+     +++++    
Sbjct: 1001 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATA 1060

Query: 431  LLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFN 472
            +       GV P+   ++ ++ G C     KAR + E    F 
Sbjct: 1061 IYKDMCSRGVGPDGKTYENLVKGHC-----KARNMKEAWFLFQ 1098



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 195/440 (44%), Gaps = 20/440 (4%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQKAIKEA 80
            SYN +I    + GRI E   LL  ME KG       Y      + RF  + K  K I E 
Sbjct: 691  SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLI-EV 749

Query: 81   FRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             +   L PN  +  S   +L  +C  ++  E   +++R     G+  D  +YTTLI    
Sbjct: 750  MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR----QGILPDTVVYTTLIDGFC 805

Query: 139  KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
            K G + A  + F+EM +  I P+V TY A+I G  + G + +A   +  M  K ++PD V
Sbjct: 806  KRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSV 865

Query: 199  VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
             F  LI    ++G +  AF V   M        P+ +T   L+      G +D A E+  
Sbjct: 866  TFTELINGYCKAGHMKDAFRVHNHMIQA--GCSPNVVTYTTLIDGLCKEGDLDSANELLH 923

Query: 259  MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
             + K  ++     Y   +N   ++G+ E A  +  +    G+  D V  + L+D    +G
Sbjct: 924  EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 983

Query: 319  KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
            +++ A EIL+E   +G+   I++++ LM         +   +L   M +  + P  +T N
Sbjct: 984  EMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 1043

Query: 379  ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            +L+   C  + L     +  DM S G+ P+  TY  L+    +  +++    L  + K  
Sbjct: 1044 SLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGK 1103

Query: 439  GVIPNLVMFKCII-GMCSRR 457
            G   ++  +  +I G   R+
Sbjct: 1104 GFSVSVSTYSVLIKGFLKRK 1123



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 186/396 (46%), Gaps = 12/396 (3%)

Query: 67   FFNVCKSQKAIKEAFRFFKLVPNP--TLSTFNMLMSVCASSKD---SEGAFQVLRLVQEA 121
            FF V      ++EA R F+ + N    LS  +  + +   SKD   +  A  V R   E 
Sbjct: 624  FFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEV 683

Query: 122  GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
            G+  +   Y  +I    + G++     +   M   G  P+V +Y  +++G  + G++ K 
Sbjct: 684  GVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKV 743

Query: 182  FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
            +    +M+ K +KP+  ++ ++I    +   +  A +  +EM  +   + PD +    L+
Sbjct: 744  WKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ--GILPDTVVYTTLI 801

Query: 242  KACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKG 299
                  G +  A + +  +H  +I  TP+V  YT  I+   Q GD   A  ++ +M  KG
Sbjct: 802  DGFCKRGDIRAASKFFYEMHSRDI--TPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKG 859

Query: 300  VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
            + PD V  + LI+    AG ++ AF +       G S  +++Y++L+       +   A 
Sbjct: 860  LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 919

Query: 360  ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            EL   M  I L+P + T N+++  LC    + + ++++ + ++ GL  +T+TY+ L+ A 
Sbjct: 920  ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 979

Query: 420  ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
             +  +++    +L +    G+ P +V F  ++ G C
Sbjct: 980  CKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFC 1015



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 174/375 (46%), Gaps = 7/375 (1%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            L R  +++E  +   +M R+G+L    VY       CK +  I+ A +FF  + +    P
Sbjct: 769  LCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCK-RGDIRAASKFFYEMHSRDITP 827

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
             + T+  ++S      D   A ++   +   GL+ D   +T LI    K+G +   F V 
Sbjct: 828  DVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVH 887

Query: 151  HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            + M+ AG  PNV TY  LIDG  K G +  A      M    ++P+   +N+++    +S
Sbjct: 888  NHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKS 947

Query: 211  GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
            G ++ A  ++ E  A    ++ D +T   LM A   +G++D+A+E+ K +    ++ T  
Sbjct: 948  GNIEEAVKLVGEFEAA--GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 1005

Query: 271  VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
             + + +N     G  E    + + M  KG+ P+    ++L+        ++AA  I ++ 
Sbjct: 1006 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 1065

Query: 331  KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             ++G+     +Y +L+     A+N ++A  L++ MK      +VST + LI       + 
Sbjct: 1066 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKF 1125

Query: 391  PKTMEVLSDMKSLGL 405
             +  EV   M+  GL
Sbjct: 1126 LEAREVFDQMRREGL 1140



 Score = 45.4 bits (106), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 50/112 (44%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P  +TFN L+       + + A  + + +   G+  D K Y  L+    K+  +   + +
Sbjct: 1037 PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFL 1096

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            F EM   G   +V TY  LI G  K  +  +A   +  MR + +  D+ +F+
Sbjct: 1097 FQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFD 1148



 Score = 42.4 bits (98), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELY 362
           +VF   L+DF    G +  A  + ++  N G+ + + S +  +   S +      A+ ++
Sbjct: 622 DVFFQVLVDF----GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVF 677

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
                + +   V++ N +I  +C   ++ +   +L  M+  G  P+ I+YS ++    R 
Sbjct: 678 REFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRF 737

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            +++    L+   K  G+ PN  ++  IIG+  R
Sbjct: 738 GELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCR 771


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 187/398 (46%), Gaps = 23/398 (5%)

Query: 29  LHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +H+Y    N L +  +I E + L+E +   G       Y+A    +CK  + ++EA    
Sbjct: 259 IHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGR-LEEAIDLL 317

Query: 85  -KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            K+V N   P + T+  L+      K S  A+++ + +   GL  D   YT LI    ++
Sbjct: 318 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQT 377

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK+     V+  M + G  P+V T   +IDG +KAG++  A   +  M ++ + P+ VV+
Sbjct: 378 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 437

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +ALI    ++  +D A ++LA+M        PD IT   L+     +G V+ AR  +  +
Sbjct: 438 SALIHGLCKARKMDCALEMLAQMKKAF--CTPDTITYNILIDGLCKSGDVEAARAFFDEM 495

Query: 261 HKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +   K  P+VYT  I I+   + G+ + AC V DDM+    +      S+L+D    +G
Sbjct: 496 LEAGCK--PDVYTYNILISGLCKAGNTDAACGVLDDMSSSRFV-----YSSLVDGLCKSG 548

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           K+E    +  E +  G++        +   C  A    +A+ L+  ++   + P     N
Sbjct: 549 KLEGGCMLFHEMERSGVANSQTRTRLIFHLC-KANRVDEAVSLFNAIRKEGM-PHPYAYN 606

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           ++I+AL    ++ +   V  +M      P+ +TY+ LL
Sbjct: 607 SIISALIKSGKVNEGQAVYQEMTRW-WKPDRVTYNALL 643



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 186/456 (40%), Gaps = 78/456 (17%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+N+L++    +++ E AF V+R ++E  G+    K +  ++    KSGKV A  +
Sbjct: 152 PDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMD 211

Query: 149 VF----------------------------------HEMVNAGIEPNVHTYGALIDGCAK 174
            F                                   E    G   ++HTY A+++  AK
Sbjct: 212 HFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAK 271

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
             ++ +A      + +    P    +NAL+    + G ++ A D+L ++    +   PD 
Sbjct: 272 NKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD--NGCTPDV 329

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSV 291
           +T  +L+      G+  R+ E YK+  +   +G       YT  I    QTG    A SV
Sbjct: 330 VTYTSLIDGL---GKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSV 386

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           Y  MT  G +PD V LS +ID    AG++ AA  I +  + +G++   + YS+L+     
Sbjct: 387 YKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCK 446

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A+    ALE+   MK     P   T N LI  LC    +        +M   G  P+  T
Sbjct: 447 ARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYT 506

Query: 412 YSILL----------VACERKDD--------------------VEVGLMLLSQAKEDGVI 441
           Y+IL+           AC   DD                    +E G ML  + +  GV 
Sbjct: 507 YNILISGLCKAGNTDAACGVLDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVA 566

Query: 442 PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477
            +    + I  +C     KA  ++E V  FN+ R +
Sbjct: 567 NSQTRTRLIFHLC-----KANRVDEAVSLFNAIRKE 597



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 112/256 (43%), Gaps = 38/256 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L + GRI   + + + ME +GL   + VY A    +CK++K   A++   +  K    P 
Sbjct: 409 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 468

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-----------CK------------ 128
             T+N+L+     S D E A      + EAG K D           CK            
Sbjct: 469 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLD 528

Query: 129 -------LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
                  +Y++L+    KSGK++    +FHEM  +G+  N  T   LI    KA +V +A
Sbjct: 529 DMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGV-ANSQTRTRLIFHLCKANRVDEA 587

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +  +R + + P    +N++I+A  +SG V+    V  EM        PD +T  AL+
Sbjct: 588 VSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEM---TRWWKPDRVTYNALL 643

Query: 242 KACANAGQVDRAREVY 257
                A ++DRA   Y
Sbjct: 644 NGMIGANRMDRAHYYY 659



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 152/379 (40%), Gaps = 45/379 (11%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA--GIEPNVHTYGALIDGCA 173
           RL +E    A  K++      C K    D  +E+F  + +   G + +VHT  AL+D  A
Sbjct: 78  RLRREISTDAVVKIFQ-----CLKDA--DLAWELFQCLSSPRFGFQHSVHTGNALLDVFA 130

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP- 232
           +  +  +A        +   +PD   +N LIT    +   + AF V+ EM  E   V P 
Sbjct: 131 RTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIREME-EDFGVAPS 189

Query: 233 ---------------------DHI------------TIGALMKACANAGQVDRAREVYKM 259
                                DH             T   L+     AG + +A  + + 
Sbjct: 190 LKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQE 249

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
                       YT  +N  ++    + A ++ + +T  G  P     +AL++     G+
Sbjct: 250 TTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGR 309

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           +E A ++L++  + G +  +++Y+SL+      K   +A +L++ M S  L        A
Sbjct: 310 LEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTA 369

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           LI  L    ++P+   V   M S G  P+ +T S ++    +   +   + +    +  G
Sbjct: 370 LIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG 429

Query: 440 VIPNLVMFKCII-GMCSRR 457
           + PN V++  +I G+C  R
Sbjct: 430 LAPNEVVYSALIHGLCKAR 448


>gi|449489553|ref|XP_004158346.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g55840-like [Cucumis sativus]
          Length = 1079

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/504 (21%), Positives = 210/504 (41%), Gaps = 63/504 (12%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + S+N LI     QG++ + +++L  MER G +     Y+      CK     K  
Sbjct: 171 VCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCK-----KGR 225

Query: 81  FRFFKLVPN--------PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           F+F  ++ +          + T+NM + S+C +S+ ++G + VL+ ++   +  +   Y 
Sbjct: 226 FKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQG-YLVLKKMRNKMITPNEVSYN 284

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
           TLI    K GK+     VF+EM+   + PN+ TY  LI+G    G   +A     +M + 
Sbjct: 285 TLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRLLDVMEAN 344

Query: 192 NVKPDRVVFNALITACGQS-----------------------------------GAVDRA 216
           +V+P+ V    L+    +S                                   G +D A
Sbjct: 345 DVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTSLNCISHTVMIDGLCRNGLLDEA 404

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
           F +L EM  +   V PD IT   L+      G +++A+EV   I++        +++  I
Sbjct: 405 FQLLIEMCKD--GVYPDIITFSVLINGFCKVGNLNKAKEVMSKIYREGFVPNNVIFSTLI 462

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
               + G+       Y  M   G   D    ++L+      GK+  A E L      G+ 
Sbjct: 463 YNSCKVGNVYEGMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLV 522

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
              +++  ++   +N  +   A  +++ M S    P+  T  +L+  LC G    +  ++
Sbjct: 523 PNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHPSPFTYGSLLKVLCKGQNFWEARKL 582

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L  +  + L  +TI+Y+ L+V   +  ++   + L  +  ++ ++P+   + CI+    R
Sbjct: 583 LKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYTYTCILSGLIR 642

Query: 457 RYE-------KARTLNEHVLSFNS 473
                       R + + +L+ NS
Sbjct: 643 EGRLVCAFIFLGRLMQKEILTLNS 666



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 181/421 (42%), Gaps = 44/421 (10%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           +RQG +   ++    M  +G        +    ++ K+ +A    + FFK +      P 
Sbjct: 116 LRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRA-HLVWXFFKQMLTSRVCPN 174

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           +S+FN+L+SV       + A  +L +++  G       Y TL++ C K G+      + H
Sbjct: 175 VSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIH 234

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC---G 208
            M   GI+ +V TY   ID   +  + A+ +     MR+K + P+ V +N LI      G
Sbjct: 235 HMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEG 294

Query: 209 QSGAVDRAFDVLAEMN------------------------------AEVHPVDPDHITIG 238
           + G   R F+ + E+N                               E + V P+ +TIG
Sbjct: 295 KIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRLLDVMEANDVRPNEVTIG 354

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDM 295
            L+     + + D AR +   + +Y+I  T      +T+ I+   + G  + A  +  +M
Sbjct: 355 TLLNGLYKSAKFDVARNI---LERYSINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEM 411

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            K GV PD +  S LI+     G +  A E++ +   +G     + +S+L+       N 
Sbjct: 412 CKDGVYPDIITFSVLINGFCKVGNLNKAKEVMSKIYREGFVPNNVIFSTLIYNSCKVGNV 471

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            + ++ Y  M          T N+L+ +LC+  +L +  E L  +  +GL PN++T+  +
Sbjct: 472 YEGMKFYAAMNLNGQNADNFTCNSLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCI 531

Query: 416 L 416
           +
Sbjct: 532 I 532



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 89/446 (19%), Positives = 186/446 (41%), Gaps = 22/446 (4%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE-----AF 81
            SYN LI    + G + E + L E+M +  +L     Y       C     I+E     AF
Sbjct: 597  SYNTLIVEISKSGNLLEAVRLFEEMIQNNILPDSYTY------TCILSGLIREGRLVCAF 650

Query: 82   RFFKLVPNPTLSTFNMLMSVCA-----SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             F   +    + T N ++  C       +  S+ A  + + ++E GL  D     ++   
Sbjct: 651  IFLGRLMQKEILTLNSIVYTCFIDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDG 710

Query: 137  CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             ++ GKV +   +  +  N  + PN+ T+  L+ G ++   +   F  Y +MR     P+
Sbjct: 711  YSRMGKVFSASSLISKTRNKNVIPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPN 770

Query: 197  RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
            R+ +++LI      G ++    +L    AE   +D   +T   L++ C     +D+  ++
Sbjct: 771  RLTYHSLILGLCNHGMLELGIKMLKMFIAESSTIDD--LTFNMLIRKCCEINDLDKVIDL 828

Query: 257  YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
               +  + +    +      +   +    +       +M KKG IP       ++     
Sbjct: 829  THNMEVFRVSLDKDTQKAVTDVLVRRMVSQNYFVFMHEMLKKGFIPTSKQYCTMMKRMCR 888

Query: 317  AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
             G ++ AF++  +    GIS+   +  +++   +     ++A+ + + M  +K  PT ST
Sbjct: 889  VGDIQGAFKLKDQMVALGISLDDAAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTST 948

Query: 377  MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
               L+   C  D   +   +   M+   +  + + Y++L+ AC    DV   L    + K
Sbjct: 949  FTTLMHVFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVITALDFYEEIK 1008

Query: 437  EDGVIPNLVMFKCIIGMCSRRYEKAR 462
            + G++PN+  ++ ++   S ++  +R
Sbjct: 1009 QKGLLPNMTTYRVLVSAISTKHYVSR 1034



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 128/311 (41%), Gaps = 41/311 (13%)

Query: 269 PEVYTIAINCCSQTGD------WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
           P VYT  +   S   +      W F    +  M    V P+    + LI      GK++ 
Sbjct: 138 PSVYTCNMIMASMVKNCRAHLVWXF----FKQMLTSRVCPNVSSFNILISVLCVQGKLKK 193

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  IL   +  G    I+SY++L+  C     ++ AL L  HM+   ++  V T N  I 
Sbjct: 194 AVNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFID 253

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           +LC   +  +   VL  M++  + PN ++Y+ L+    ++  + V   + ++  E  + P
Sbjct: 254 SLCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSP 313

Query: 443 NLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 500
           NL+ +  +I G C +  +E+A  L + V+  N  RP                 +  GT+ 
Sbjct: 314 NLITYNILINGYCINGNFEEALRLLD-VMEANDVRPN---------------EVTIGTL- 356

Query: 501 TVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSL 557
                   L  L      D+   ++E   ++  +L   +   +IDG    G  D  AF L
Sbjct: 357 --------LNGLYKSAKFDVARNILERYSINRTSLNCISHTVMIDGLCRNGLLD-EAFQL 407

Query: 558 LEEAASFGIVP 568
           L E    G+ P
Sbjct: 408 LIEMCKDGVYP 418



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/316 (19%), Positives = 114/316 (36%), Gaps = 10/316 (3%)

Query: 29   LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
            LH Y+R      I  C  L   M R G       YH+    +C +   ++   +  K+  
Sbjct: 743  LHGYSR---GQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLC-NHGMLELGIKMLKMFI 798

Query: 89   NPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              + +    TFNML+  C    D +    +   ++   +  D      +     +     
Sbjct: 799  AESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDTQKAVTDVLVRRMVSQ 858

Query: 145  AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              F   HEM+  G  P    Y  ++    + G +  AF     M +  +  D     A++
Sbjct: 859  NYFVFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQGAFKLKDQMVALGISLDDAAECAMV 918

Query: 205  TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                  G ++ A  +L  M   +  + P   T   LM           A  +  ++  Y 
Sbjct: 919  RGLALCGKIEEAMWILQRM-LRMKKI-PTTSTFTTLMHVFCKKDNFKEAHNLKILMEHYR 976

Query: 265  IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
            +K     Y + I+ C   GD   A   Y+++ +KG++P+      L+        V    
Sbjct: 977  VKLDIVAYNVLISACCANGDVITALDFYEEIKQKGLLPNMTTYRVLVSAISTKHYVSRGE 1036

Query: 325  EILQEAKNQGISVGII 340
             +L++  ++G+  G +
Sbjct: 1037 IVLKDLNDRGLVSGYL 1052



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/295 (19%), Positives = 116/295 (39%), Gaps = 3/295 (1%)

Query: 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL 220
           N   +  LI    + G V  A   +  M  +  KP     N ++ +  ++      +   
Sbjct: 104 NPAVFDLLIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVKNCRAHLVWXFF 163

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
            +M      V P+  +   L+      G++ +A  +  M+ +     T   Y   ++ C 
Sbjct: 164 KQMLTS--RVCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVSYNTLLSWCC 221

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           + G ++FA  +   M  KG+  D    +  ID      +    + +L++ +N+ I+   +
Sbjct: 222 KKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMRNKMITPNEV 281

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           SY++L+           A  ++  M  + L P + T N LI   C      + + +L  M
Sbjct: 282 SYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFEEALRLLDVM 341

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           ++  + PN +T   LL    +    +V   +L +   +    N +    +I G+C
Sbjct: 342 EANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTSLNCISHTVMIDGLC 396


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 209/469 (44%), Gaps = 48/469 (10%)

Query: 32   YNRLIRQGRISECIDLLEDMERKGLL---DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
            +  L+  G + E   + E M   GL+   D   VY AR    C         FR F  V 
Sbjct: 605  FQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVG 664

Query: 89   N-PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
                ++++N+++  VC   + +E A  +L L++  G   D   Y+T+I    + G++D +
Sbjct: 665  VCWNVASYNIVIHFVCQLGRINE-AHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKV 723

Query: 147  FEVFHEMVNAGIEPNVHTYGA-----------------------------------LIDG 171
            +++  +M   G++PN +TYG+                                   L+DG
Sbjct: 724  WKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDG 783

Query: 172  CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
              K G +  A   +  M S+++ PD + + A+I+   Q G +  A  +  EM      ++
Sbjct: 784  FCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLC--RGLE 841

Query: 232  PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFAC 289
            PD IT   LM     AG +  A  V+   H      +P V  YT  I+   + GD + A 
Sbjct: 842  PDIITFTELMNGYCKAGHIKDAFRVHN--HMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 899

Query: 290  SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
             +  +M K G+ P+    +++++    +G +E A +++ E +  G++   ++Y++LM A 
Sbjct: 900  ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 959

Query: 350  SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
              +    KA E+   M    L+PT+ T N L+   C    L    ++L+ M + G+ PN 
Sbjct: 960  CKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 1019

Query: 410  ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 457
             T++ L+     +++++    +       GV P+   ++ ++ G C+ R
Sbjct: 1020 TTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNAR 1068



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 198/452 (43%), Gaps = 21/452 (4%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQKAIKEA 80
            SYN +I    + GRI+E   LL  ME KG       Y      + RF  + K  K I E 
Sbjct: 671  SYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLI-EK 729

Query: 81   FRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             +   L PN     S   +L  +C  ++  E   +++      G+  D  +YTTL+    
Sbjct: 730  MKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIG----QGILPDTIVYTTLVDGFC 785

Query: 139  KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
            K G + A  + F+EM +  I P+V TY A+I G  + G + +A   +  M  + ++PD +
Sbjct: 786  KRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDII 845

Query: 199  VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
             F  L+    ++G +  AF V   M        P+ +T   L+      G +D A E+  
Sbjct: 846  TFTELMNGYCKAGHIKDAFRVHNHMIQA--GCSPNVVTYTTLIDGLCKEGDLDSANELLH 903

Query: 259  MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
             + K  ++     Y   +N   ++G+ E A  +  +    G+  D V  + L+D    +G
Sbjct: 904  EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 963

Query: 319  KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
            +++ A EIL E   +G+   I++++ LM         +   +L   M +  + P  +T N
Sbjct: 964  EMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 1023

Query: 379  ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
             L+   C  + L     +  DM S G+ P+  TY  L+       +++    L  + K  
Sbjct: 1024 CLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGK 1083

Query: 439  GVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 468
            G   ++  +  +I G   R ++ +AR + + +
Sbjct: 1084 GFSVSVSTYSVLIKGFFKRKKFVEAREIFDQM 1115



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 182/430 (42%), Gaps = 5/430 (1%)

Query: 21   YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
            Y  DV       N   R G + +   L+E M++KGL      Y +    +C+  K  +  
Sbjct: 700  YTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAE 759

Query: 81   FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              F +++     P    +  L+       D   A +    +    +  D   YT +I+  
Sbjct: 760  EAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 819

Query: 138  AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
             + G +    ++FHEM+  G+EP++ T+  L++G  KAG +  AF  +  M      P+ 
Sbjct: 820  CQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNV 879

Query: 198  VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
            V +  LI    + G +D A ++L EM      + P+  T  +++     +G ++ A ++ 
Sbjct: 880  VTYTTLIDGLCKEGDLDSANELLHEMWK--IGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 937

Query: 258  KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
                   +      YT  ++   ++G+ + A  +  +M  KG+ P  V  + L++     
Sbjct: 938  GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLH 997

Query: 318  GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            G +E   ++L     +GI+    +++ L+       N + A  +Y+ M S  ++P   T 
Sbjct: 998  GMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTY 1057

Query: 378  NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
              L+   C+   + +   +  +MK  G   +  TYS+L+    ++        +  Q + 
Sbjct: 1058 ENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRR 1117

Query: 438  DGVIPNLVMF 447
            DG+  +  +F
Sbjct: 1118 DGLAADKEIF 1127



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 73/154 (47%), Gaps = 5/154 (3%)

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN-WQKALELY 362
           +VF   L++F    G +  A ++ ++  N G+ + + S +  +   S   N    A+ ++
Sbjct: 602 DVFFQVLVEF----GMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVF 657

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
                + +   V++ N +I  +C   ++ +   +L  M+  G  P+ I+YS ++    R 
Sbjct: 658 REFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRF 717

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            +++    L+ + K+ G+ PN   +  IIG+  R
Sbjct: 718 GELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCR 751



 Score = 43.1 bits (100), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 49/112 (43%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            P  +TFN L+       + + A  + + +   G++ D K Y  L+     +  +   + +
Sbjct: 1017 PNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFL 1076

Query: 150  FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
            F EM   G   +V TY  LI G  K  +  +A   +  MR   +  D+ +F+
Sbjct: 1077 FQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFD 1128


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 174/360 (48%), Gaps = 10/360 (2%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            ++  +C   K +  A ++LR +++ G++ +  +Y  ++    K G V     +  EMV 
Sbjct: 166 TLINGLCKMGK-TRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVG 224

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVD 214
            GI  +V TY +LI G   AGQ   A      M  K +V+PD   FN L+ A  + G V 
Sbjct: 225 KGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVA 284

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEV-- 271
            A +V   M      ++PD ++  ALM      G +  A+EV+ +M+ +  +   P V  
Sbjct: 285 EARNVFGLMIKR--GLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKL---PNVIS 339

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y+  IN   +    + A  +  +M ++ ++PD V  + L+D    +G+V   +++++  +
Sbjct: 340 YSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMR 399

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G +  +I+Y+ L+      +   KAL L++H+    + P + T N LI  LC G ++ 
Sbjct: 400 ASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMK 459

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              E+   +   G  PN  TY+I++    R+  ++    LL +  +DG  PN V F  ++
Sbjct: 460 AAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPNAVTFDPLV 519



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 179/400 (44%), Gaps = 8/400 (2%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K  P P+L T ++ ++          AF V+  + + G   D    TTL+      G+  
Sbjct: 84  KGTPKPSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTF 143

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               ++   V+ G   +   YG LI+G  K G+   A      M    V+P+ +++N ++
Sbjct: 144 EALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVV 203

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVYKMIHKY 263
               + G V  A  + +EM  +   +  D  T  +L+     AGQ   A R + +M+ K 
Sbjct: 204 DGLCKEGLVTEACGLCSEMVGK--GICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKE 261

Query: 264 NIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +++  P+VYT  I ++   + G    A +V+  M K+G+ PD V  +AL++     G + 
Sbjct: 262 DVR--PDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMS 319

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E+      +G    +ISYS+L+      K   +AL L   M    L P   T N L+
Sbjct: 320 EAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLL 379

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             L    ++    +++  M++ G  P+ ITY++LL    +++ ++  L L     + G+ 
Sbjct: 380 DGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGIS 439

Query: 442 PNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
           PN+  +  +I G+C     KA      +LS    RP I  
Sbjct: 440 PNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRT 479



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 173/394 (43%), Gaps = 10/394 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEAFRFFKLVPNP 90
           L  +GR  E ++L +    KG    D+V +    N +CK   ++ AI+   +  K    P
Sbjct: 136 LCLKGRTFEALNLYDHAVSKGF-SFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRP 194

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
            L  +NM++  +C     +E       +V + G+  D   Y +LI     +G+      +
Sbjct: 195 NLIMYNMVVDGLCKEGLVTEACGLCSEMVGK-GICIDVFTYNSLIHGFCGAGQFQGAVRL 253

Query: 150 FHEMV-NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            +EMV    + P+V+T+  L+D   K G VA+A   +G+M  + ++PD V  NAL+    
Sbjct: 254 LNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWC 313

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G +  A +V   M  E   + P+ I+   L+        VD A  +   +H+ N+   
Sbjct: 314 LRGCMSEAKEVFDRM-VERGKL-PNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPD 371

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   ++  S++G   +   + + M   G  PD +  + L+D       ++ A  + Q
Sbjct: 372 TVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQ 431

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
              + GIS  I +Y+ L+         + A E+++ +     +P + T N +I  L    
Sbjct: 432 HIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREG 491

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
            L +   +L +M   G  PN +T+  L+ A   K
Sbjct: 492 LLDEAEALLLEMVDDGFPPNAVTFDPLVRALLEK 525



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 123/307 (40%), Gaps = 29/307 (9%)

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE----VYT 273
           D ++  +  +H   P  I   +L K  ++  +      V  +    + KGTP+      +
Sbjct: 38  DAVSTFHRMLHLHPPPSIV--SLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLS 95

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I IN  +  G    A SV   + K+G   D   L+ L+      G+   A  +   A ++
Sbjct: 96  IFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSK 155

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G S   + Y +L+         + A+EL   M+   ++P +   N ++  LC    + + 
Sbjct: 156 GFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEA 215

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ--AKEDGVIPNLVMFK--- 448
             + S+M   G+C +  TY+ L+         +  + LL++   KED V P++  F    
Sbjct: 216 CGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKED-VRPDVYTFNILV 274

Query: 449 ---CIIGMCSRRYEK-----ARTLNEHVLSFNSGRPQIENKW-----TSLALMVYREAIV 495
              C +GM +           R L   V+S N+    + N W      S A  V+   + 
Sbjct: 275 DALCKLGMVAEARNVFGLMIKRGLEPDVVSCNA----LMNGWCLRGCMSEAKEVFDRMVE 330

Query: 496 AGTIPTV 502
            G +P V
Sbjct: 331 RGKLPNV 337


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 119/488 (24%), Positives = 206/488 (42%), Gaps = 41/488 (8%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T ++L+   +  +  + AF V   + + GL+ D   + TLI    K GK     E
Sbjct: 127 SPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVE 186

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F +   +G +P V+TY  +I+G  K G+   A G +  M     +P+ V +N LI +  
Sbjct: 187 FFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLC 246

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   V+ A D+ + M A+   + PD  T  +L++   N  +   A  +   +   NI   
Sbjct: 247 KDKLVNEALDIFSYMKAK--RISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPN 304

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE--AAFEI 326
              + + ++   + G    A  V+  MT+ GV PD V  S+L+   G++ ++E   A ++
Sbjct: 305 IFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLM--YGYSLRMEIVEARKL 362

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
                 +G      SY+ L+     AK   +A +L+  M    L P     N LI  LC 
Sbjct: 363 FDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQ 422

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +L +  ++  +M S G  P+  TYS+LL    ++  +     L    +   + P++ M
Sbjct: 423 LGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAM 482

Query: 447 FKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
           +  +I  MC     + AR L                         + E  V G +P V++
Sbjct: 483 YNILIDAMCKFGNLKDARKL-------------------------FSELFVQGLLPNVQI 517

Query: 505 VSKVLGCL---QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLE 559
            + ++  L    L   A    R +E  G   D    +    +I GF +Y  + RA  L+ 
Sbjct: 518 YTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYN---VIIRGFLQYKDESRAAQLIG 574

Query: 560 EAASFGIV 567
           E    G V
Sbjct: 575 EMRDRGFV 582



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 179/419 (42%), Gaps = 13/419 (3%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTF 95
           R+     +   M + GL      ++     +CK  K   +A  FF         PT+ T+
Sbjct: 145 RVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGK-FAQAVEFFDDFEASGCQPTVYTY 203

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
             +++      ++  A  + + ++EAG + +   Y  LI +  K   V+   ++F  M  
Sbjct: 204 TTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKA 263

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
             I P++ TY +LI G     +  +A      M S N+ P+   FN L+ A  + G V  
Sbjct: 264 KRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSE 323

Query: 216 A---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           A   F  + EM      V+PD +T  +LM   +   ++  AR+++  +     K     Y
Sbjct: 324 AQGVFKTMTEMG-----VEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSY 378

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
            I I    +    + A  ++++M  +G+ PD V  + LI      G++  A ++ +   +
Sbjct: 379 NILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHS 438

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G    + +YS L+          KA  L+  M+S  LKP ++  N LI A+C    L  
Sbjct: 439 NGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKD 498

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             ++ S++   GL PN   Y+ ++    ++  ++  L      + DG  P+   +  II
Sbjct: 499 ARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVII 557



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 176/415 (42%), Gaps = 11/415 (2%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N L + G+ ++ ++  +D E  G       Y      +CK  +    A  F K+      
Sbjct: 173 NGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQ 232

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N+L+      K    A  +   ++   +  D   Y +LI       +      +
Sbjct: 233 PNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASAL 292

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            +EM +  I PN+ T+  L+D   K G+V++A G +  M    V+PD V +++L+     
Sbjct: 293 LNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSL 352

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGT 268
              +  A  +   M  +     PD  +   L+K    A ++D A++++ +MIH+     T
Sbjct: 353 RMEIVEARKLFDAMITK--GCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQ---GLT 407

Query: 269 PE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+   Y   I+   Q G    A  ++ +M   G +PD    S L+D     G +  AF +
Sbjct: 408 PDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRL 467

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            +  ++  +   I  Y+ L+ A     N + A +L+  +    L P V     +I  LC 
Sbjct: 468 FRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCK 527

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
              L + +E   +M+  G  P+  +Y++++    +  D      L+ + ++ G +
Sbjct: 528 EGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFV 582



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 192/441 (43%), Gaps = 31/441 (7%)

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
           D  +    +  A  ++  M  +   P  + F  L++A  + G    A   L++   E+  
Sbjct: 67  DDASSFRNIDDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSK-QMELAG 125

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           + PD  T+  L+   ++  +VD A  V+  + K  ++     +   IN   + G +  A 
Sbjct: 126 LSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAV 185

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
             +DD    G  P     + +I+     G+  AA  + ++ +  G    +++Y+ L+ + 
Sbjct: 186 EFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSL 245

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
              K   +AL+++ +MK+ ++ P + T N+LI  LC+  +  +   +L++M SL + PN 
Sbjct: 246 CKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNI 305

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEH 467
            T+++L+ A  ++  V     +     E GV P++V +  ++   S R E  +AR L + 
Sbjct: 306 FTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDA 365

Query: 468 VLSFNSGRPQI-----------ENKWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQLP 515
           +++    +P             + K    A  ++ E I  G  P  V   + + G  QL 
Sbjct: 366 MIT-KGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQL- 423

Query: 516 YNADIRE--RLVENLGVSADALKRSNLCSLIDGFGE--YDPRAFSLLEEAASFGIVPCVS 571
               +RE   L +N+  + +         L+DGF +  Y  +AF L     S  + P ++
Sbjct: 424 --GRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIA 481

Query: 572 FKEIPV--------VVDARKL 584
              I +        + DARKL
Sbjct: 482 MYNILIDAMCKFGNLKDARKL 502


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 156/341 (45%), Gaps = 10/341 (2%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MFE 148
           T+  FN +M V A S   + A Q+L  + + G+  D   + TLI   +KSG + A    +
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-- 206
           +  E+  +G+ P+V TY  LI  C+++  +  A   +  M +   +PD   +NA+++   
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHG 339

Query: 207 -CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
            CG++   +R F  L E         PD IT  +L+ A A  G VD+     + + K   
Sbjct: 340 RCGKAEEAERLFRELVEKG-----FMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGF 394

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     Y   I+   + G  + A  +YD+M   G  PD V  + +ID  G   ++  A +
Sbjct: 395 KKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGK 454

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L++  + G+   +I++S+L+ A +       A   ++ M +  +KP       ++    
Sbjct: 455 VLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFA 514

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
                 K + +   M +    P+   Y +LLVA  ++D  E
Sbjct: 515 RSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCE 555



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 146/315 (46%), Gaps = 2/315 (0%)

Query: 141  GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            G++D ++ V  E+ +   + +  T   L+D  AKAG V +    Y  M++    P+  ++
Sbjct: 829  GRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLY 888

Query: 201  NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
             ++I+             ++AEM  E     PD   + AL+     AG  DR  +VY+ I
Sbjct: 889  RSMISLLCHHNRFRDVELMIAEM--EGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSI 946

Query: 261  HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             +  ++   + Y   I    ++   E   ++ ++M K+G+ P      +L+  +  A   
Sbjct: 947  LEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELR 1006

Query: 321  EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            E A +I +E +++   +    Y  +M    NA N  KA  L   MK   ++PT++TM+ L
Sbjct: 1007 EQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHIL 1066

Query: 381  ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
            +T+     Q  +   VL+++KS  L  +T+ YS +  A  +  D   G   L + K DGV
Sbjct: 1067 MTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGV 1126

Query: 441  IPNLVMFKCIIGMCS 455
             P+  ++ C I   S
Sbjct: 1127 EPDHQVWTCFIRAAS 1141



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 164/377 (43%), Gaps = 27/377 (7%)

Query: 23  HD--VSEQLHSYNRLIRQGRISECI------DLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           HD  +   L S+N LI     S C+      DLL ++ + GL   D + +    + C   
Sbjct: 248 HDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRP-DVITYNTLISACSQS 306

Query: 75  KAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
             +++A   F+ +      P L T+N ++SV      +E A ++ R + E G   D   Y
Sbjct: 307 SNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITY 366

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            +L+   AK G VD +     ++V AG + N  TY  +I    K G++  A G Y  MR+
Sbjct: 367 NSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRA 426

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
               PD V +  +I + G+   +  A  VL +M      + P  I   AL+ A A  G+ 
Sbjct: 427 MGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDA--GLKPTLIAFSALICAYAKGGRR 484

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
             A   +  +    +K     Y + ++  +++GD E    +Y  M      PD+     L
Sbjct: 485 ADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVL 544

Query: 311 IDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGAC--SNAKNWQKA-LELYEHMK 366
           +       K E   E++Q+ +    +++GIIS   +   C    AK  +KA L+ Y    
Sbjct: 545 LVALAKEDKCEEIEEVIQDMELLCRMNLGIISTMLIKARCVSQGAKLLKKACLQGY---- 600

Query: 367 SIKLKPTVSTMNALITA 383
               KP + ++ +++ A
Sbjct: 601 ----KPDIKSLRSIMNA 613



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 116/552 (21%), Positives = 229/552 (41%), Gaps = 44/552 (7%)

Query: 21   YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI--- 77
            Y  D+       N  +   +  E + LLE +        D +       +C+ Q +I   
Sbjct: 600  YKPDIKSLRSIMNAYVMTEKHEEGLSLLECICEHVSFSQDLISECSIMLLCRKQTSISAY 659

Query: 78   -KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             + + R     P+   + +  L++    ++    A QV   +Q  G++A   +Y ++I+T
Sbjct: 660  EQYSQRLMLKYPDQNCNLYEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIIST 719

Query: 137  CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI---DGCAKAGQVAKAFGAYGIMRSKNV 193
              K G  +    +  + + +GI  N+ +   +I    G  K  Q A+     G+ ++  +
Sbjct: 720  YCKLGFPETAHRLMDDALQSGIPLNILSCRVIIIEAYGKIKLWQQAEIL-VKGLRQASGI 778

Query: 194  KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
              DR ++NALI A  +SG  ++A  V   M  +  P+ P   ++  +M+A    G++D  
Sbjct: 779  --DRRIWNALIHAYAESGLYEKARAVFDNM-IKTGPL-PTVDSVNGMMRALIVDGRLDEL 834

Query: 254  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
              V + +   N K +     + ++  ++ GD      +Y+ M   G +P+     ++I  
Sbjct: 835  YVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISL 894

Query: 314  AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              H  +      ++ E +  G    +   ++L+   + A N+ +  ++Y  +    L+P 
Sbjct: 895  LCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPD 954

Query: 374  VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
              T N LI   C   +  +   +L++M   GL P   +Y  LL A  + +       L  
Sbjct: 955  EDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAE-------LRE 1007

Query: 434  QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF--NSG-RPQIENKWTSLALMVY 490
            QA +        +F+    M S+ Y+  R++   ++    N+G   + EN      L V 
Sbjct: 1008 QADQ--------IFE---EMRSKSYQLNRSIYHMMMKIYRNAGNHSKAEN-----LLAVM 1051

Query: 491  REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--- 547
            +E  +  TI T+ ++    G    P  A   E ++ NL  S+  +      ++ D +   
Sbjct: 1052 KEDGIEPTIATMHILMTSYGTAGQPREA---ENVLNNLKSSSLEVSTLPYSTVFDAYLKN 1108

Query: 548  GEYDPRAFSLLE 559
            G+Y+     LLE
Sbjct: 1109 GDYNHGTTKLLE 1120



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 118/255 (46%), Gaps = 4/255 (1%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG--QVDRAREV 256
           VFNA++    +SG  D A  +L  M+     +DPD ++   L+ A + +G      A ++
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDTMHD--RGIDPDLVSFNTLINARSKSGCLAAGVALDL 280

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
              + +  ++     Y   I+ CSQ+ + E A +V++DM      PD    +A++   G 
Sbjct: 281 LFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGR 340

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            GK E A  + +E   +G     I+Y+SL+ A +   N  K     E +     K    T
Sbjct: 341 CGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEIT 400

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            N +I       +L   + +  +M+++G  P+ +TY++++ +  + + +     +L    
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMT 460

Query: 437 EDGVIPNLVMFKCII 451
           + G+ P L+ F  +I
Sbjct: 461 DAGLKPTLIAFSALI 475



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 140/311 (45%), Gaps = 15/311 (4%)

Query: 37   RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-------- 88
            + G + E + +   M+  G L    +Y +    +C   +     FR  +L+         
Sbjct: 862  KAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNR-----FRDVELMIAEMEGAGF 916

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             P L+  N L+++  ++ + +   QV R + EAGL+ D   Y TLI    +S + +  F 
Sbjct: 917  KPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFT 976

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            + +EM   G+ P + +Y +L+   AKA    +A   +  MRSK+ + +R +++ ++    
Sbjct: 977  LLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYR 1036

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             +G   +A ++LA M  +   ++P   T+  LM +   AGQ   A  V   +   +++ +
Sbjct: 1037 NAGNHSKAENLLAVMKED--GIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVS 1094

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
               Y+   +   + GD+    +   +M + GV PD    +  I  A    +   A  +L+
Sbjct: 1095 TLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAILLLK 1154

Query: 329  EAKNQGISVGI 339
              ++ G  + I
Sbjct: 1155 SLQDCGFDLPI 1165



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 133/273 (48%), Gaps = 18/273 (6%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
           ++      PD V F  ++ A G+S    A+D AF+ LA  +A      P    +  ++  
Sbjct: 147 VLDGARASPDEVAF--VVRAVGESSWRRALD-AFEWLARSSA------PASRAVAVVLGV 197

Query: 244 CANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
              A Q   A EV+    ++  +G T +V+   +   +++G ++ A  + D M  +G+ P
Sbjct: 198 LGRARQDSIAEEVFL---RFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDP 254

Query: 303 DEVFLSALIDFAGHAGKVEA--AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
           D V  + LI+    +G + A  A ++L E +  G+   +I+Y++L+ ACS + N + A+ 
Sbjct: 255 DLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVT 314

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           ++E M + + +P + T NA+++      +  +   +  ++   G  P+ ITY+ LL A  
Sbjct: 315 VFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFA 374

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           ++ +V+       Q  + G   N + +  +I M
Sbjct: 375 KEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHM 407



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 131/316 (41%), Gaps = 9/316 (2%)

Query: 93   STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            ST  +L+   A + D     ++   ++ AG   +  LY ++I+      +   +  +  E
Sbjct: 851  STVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAE 910

Query: 153  MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            M  AG +P++    AL++    AG   +    Y  +    ++PD   +N LI    +S  
Sbjct: 911  MEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFR 970

Query: 213  VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
             +  F +L EM      + P   +  +L+ A A A   ++A ++++ +   + +    +Y
Sbjct: 971  PEEGFTLLNEMGK--RGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIY 1028

Query: 273  TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
             + +      G+   A ++   M + G+ P    +  L+   G AG+   A  +L   K+
Sbjct: 1029 HMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKS 1088

Query: 333  QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA--LCDGDQL 390
              + V  + YS++  A     ++         MK   ++P        I A  LC+    
Sbjct: 1089 SSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCE---- 1144

Query: 391  PKTMEVLSDMKSLGLC 406
             +T + +  +KSL  C
Sbjct: 1145 -QTADAILLLKSLQDC 1159



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 90/208 (43%), Gaps = 9/208 (4%)

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           + +P+     +    ++  W  A   ++ + +    P    ++ ++   G A +   A E
Sbjct: 152 RASPDEVAFVVRAVGESS-WRRALDAFEWLARSSA-PASRAVAVVLGVLGRARQDSIAEE 209

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +      +G +V +  ++++MG  + +  +  A +L + M    + P + + N LI A  
Sbjct: 210 VFLRFAGEGATVQV--FNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARS 267

Query: 386 DGDQLPK--TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
               L     +++L +++  GL P+ ITY+ L+ AC +  ++E  + +          P+
Sbjct: 268 KSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPD 327

Query: 444 LVMFKCII---GMCSRRYEKARTLNEHV 468
           L  +  ++   G C +  E  R   E V
Sbjct: 328 LWTYNAMVSVHGRCGKAEEAERLFRELV 355


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 193/459 (42%), Gaps = 48/459 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKLVP 88
           L R G  +  +D    M  +G+     +Y+A    +CK      ++  +K+ F   ++ P
Sbjct: 360 LSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES-EMSP 418

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           + T +  +M++  C    D + A QV   + + G + +   Y+TLI     SG+V+  F+
Sbjct: 419 D-TFTYTSMILGHC-RKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFD 476

Query: 149 VFHEMV-----------------------------------NAGIEPNVHTYGALIDGCA 173
           +  EM+                                   N G EPNV+TY ALI G  
Sbjct: 477 LIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLC 536

Query: 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233
            +G +  A G +  M    V P+ V +NALI    ++  +  AF VL  M    + +  +
Sbjct: 537 VSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR--NGLFTN 594

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            +T   ++K     G   +A  V   + +         Y   I     +G+   A  + D
Sbjct: 595 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 654

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 352
            M   G  PDE   + LI       K+E+AF +  E  + G+    ++Y++L+ G C + 
Sbjct: 655 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 714

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
           K    A  L EHMK    +P V T N LI  L   +      E+   M   G+ PN +TY
Sbjct: 715 K-LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTY 773

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + ++    +     + L + ++  E G +PNL+ +  +I
Sbjct: 774 TAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 812



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/422 (22%), Positives = 180/422 (42%), Gaps = 46/422 (10%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           L+  C S +        L ++ ++GL+     Y+ L+   ++ G   A+ + +H M++ G
Sbjct: 321 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 380

Query: 158 IEPNVHTYGALIDGCAKAGQVA-----------------------------------KAF 182
           ++PN+  Y A+I+   K G VA                                    A 
Sbjct: 381 VQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSAL 440

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALM 241
             +  M  +  +P+ V ++ LI     SG V+ AFD++ EM   +H + P  H   G ++
Sbjct: 441 QVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREM--ILHGILPTAHTCTGPII 498

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKG 299
             C      D  R    M +K      P VYT    I+    +G  + A  ++  M++ G
Sbjct: 499 ALCDMGCYEDAWRLFVDMKNK---GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDG 555

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           V P+ V  +ALI+      +++ AF +L      G+   I++Y+ ++       + +KA+
Sbjct: 556 VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAM 615

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
            +  +M        + T N +I   CD       + +L  M+  G  P+  +Y+ L+   
Sbjct: 616 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 675

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQ 477
            +   +E    L ++  +DG+ PN V +  +I G C   + + A +L EH +  +  RP 
Sbjct: 676 CKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEH-MKRSGCRPN 734

Query: 478 IE 479
           ++
Sbjct: 735 VQ 736



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 154/374 (41%), Gaps = 7/374 (1%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVC 102
           L  DM+ KG       Y A    +C S   +K A   F  +      P   T+N L+++ 
Sbjct: 512 LFVDMKNKGCEPNVYTYTALISGLCVS-GLLKVAIGLFHRMSRDGVFPNTVTYNALINIL 570

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
             ++  + AF VL L+   GL  +   Y  +I      G       V + M+  G   N+
Sbjct: 571 VENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANL 630

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY  +I G   +G    A     +MR    KPD   +  LI    +   ++ AF +  E
Sbjct: 631 VTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNE 690

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  +   + P+ +T  AL+       ++D A  + + + +   +   + Y + I+  ++ 
Sbjct: 691 MVDD--GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 748

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
            ++  A  +   M ++G+ P+ V  +A+ID     G    A E+  +   QG    +++Y
Sbjct: 749 NNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTY 808

Query: 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           SSL+ A       ++A  L+  ++   L P   T   +I A     ++      L  M  
Sbjct: 809 SSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIK 868

Query: 403 LGLCPNTITYSILL 416
            G  P   TY +L+
Sbjct: 869 AGCQPTLWTYGVLI 882



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 165/425 (38%), Gaps = 37/425 (8%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAF 81
            SY  LI    +  ++     L  +M   GL   +  Y A     CK +K     ++ E  
Sbjct: 667  SYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHM 726

Query: 82   RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +     PN  + T+N+L+       +  GA ++ +++ E G+  +   YT +I    K+G
Sbjct: 727  KRSGCRPN--VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNG 784

Query: 142  KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
                  E+F++M+  G  PN+ TY +LI    + G+V +A   +  +    + PD + + 
Sbjct: 785  STSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYV 844

Query: 202  ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA------------------ 243
             +I A   SG V+ AF+ L  M        P   T G L+K                   
Sbjct: 845  KMIEAYIMSGKVEHAFNFLGRMIKA--GCQPTLWTYGVLIKGLKNEYLLADQRLAALPDV 902

Query: 244  ---CANAGQVDRAREVYKM---IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
               C+   Q      V  M   + + +   + +V    ++  S  G W  A  +   M  
Sbjct: 903  VPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMIS 962

Query: 298  KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            +G+ PD+   ++L+        V+ A  + +    QG  V +  Y  L+ A       ++
Sbjct: 963  QGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKE 1022

Query: 358  ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
            A   +E+M      P       LI  L         ME L  M++    P+   Y+IL  
Sbjct: 1023 ARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAR 1082

Query: 418  ACERK 422
               +K
Sbjct: 1083 EASKK 1087



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 147/348 (42%), Gaps = 5/348 (1%)

Query: 110 GAFQVL--RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167
           G F  L  RLV      A  +    LI +C     +         +  +G+   +  Y A
Sbjct: 296 GTFAALARRLVDARRYAAAGRARIHLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSA 355

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+   ++ G  A     Y  M S+ V+P+ +++NA+I A  + G V  A  ++ ++    
Sbjct: 356 LLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES- 414

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             + PD  T  +++        +D A +V+  + K   +     Y+  IN    +G    
Sbjct: 415 -EMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNE 473

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  +  +M   G++P     +  I      G  E A+ +  + KN+G    + +Y++L+ 
Sbjct: 474 AFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALIS 533

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
               +   + A+ L+  M    + P   T NALI  L +  ++     VL+ M   GL  
Sbjct: 534 GLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFT 593

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           N +TY+ ++       D +  +++++   + G   NLV +  II G C
Sbjct: 594 NIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYC 641


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 170/370 (45%), Gaps = 12/370 (3%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+  L+  +C   + SE     +R+ Q+ G   +   Y TLI    ++G ++   +
Sbjct: 159 PDVVTYTSLIKGLCMEHRISEATRLFIRM-QKLGCWPNVVTYGTLIKGLCRTGNINLALK 217

Query: 149 VFHEMVNA------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +  EM+N         +PN+ +Y  +ID   K G+  +A   +  M  + V+PD V F+A
Sbjct: 218 LHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSA 277

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI    + G V  A   L  M   +  + PD  T  +L++     G +D A+E++  +  
Sbjct: 278 LIDTLCKEGMVIEAKKFLETM--MLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPS 335

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              +     YT+ I    +T + E A  +Y++M + G  PD      L+     AGKV  
Sbjct: 336 KGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGD 395

Query: 323 AFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
           A ++    K   +   +   S  + G C N   ++ A+EL+  +KS  +K  + + N LI
Sbjct: 396 AKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFE-AMELFNELKSYNMKLDIESFNCLI 454

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   +L    E+   +   GL P+ +TY I++    +   V+   +L    +E+G  
Sbjct: 455 DGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCT 514

Query: 442 PNLVMFKCII 451
           PNL+ +  ++
Sbjct: 515 PNLLTYSALL 524



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 147/347 (42%), Gaps = 13/347 (3%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIM 188
           +  L+   AK      +F ++ +M  AG+ PN  T   LI+      +V +   A  GIM
Sbjct: 94  FNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIM 153

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           R   + PD V + +LI        +  A  +   M  +     P+ +T G L+K     G
Sbjct: 154 RRGYI-PDVVTYTSLIKGLCMEHRISEATRLFIRM--QKLGCWPNVVTYGTLIKGLCRTG 210

Query: 249 QVDRA----REVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
            ++ A    +E+      Y I   P +  Y I I+   + G W+ A  ++++M  +GV P
Sbjct: 211 NINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRP 270

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D V  SALID     G V  A + L+    +GI   + +++SL+       +   A EL+
Sbjct: 271 DVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELF 330

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
             M S   +P V +   LI   C    + + M++ ++M  +G  P+  T+ +LL      
Sbjct: 331 LSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLA 390

Query: 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR--RYEKARTLNE 466
             V     L    K   V  NL +    + G+C     +E     NE
Sbjct: 391 GKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNE 437



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 147/331 (44%), Gaps = 11/331 (3%)

Query: 21  YAHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           YA +    + SYN +I +    G+  E   L  +M  +G+      + A    +CK    
Sbjct: 229 YAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMV 288

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           I EA +F + +      P L TF  L+       D + A ++   +   G + D   YT 
Sbjct: 289 I-EAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTV 347

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           LI    K+  V+   ++++EM+  G  P++ T+  L+ G   AG+V  A   +G+++   
Sbjct: 348 LIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHA 407

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           V  +  + +  +    ++G +  A ++  E+ +    +D +  +   L+     A +++ 
Sbjct: 408 VPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIE--SFNCLIDGLCKARKLET 465

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A E+++ + +  ++     Y I IN   + G  + A  ++  M + G  P+ +  SAL+ 
Sbjct: 466 AWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLH 525

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
                 K+E   ++L +   + +S+    Y+
Sbjct: 526 GFYKNNKLEEVVKLLHKMIQKDVSLAASIYT 556



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 20/228 (8%)

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
           IIS++ L+GA +  K++ +   LY+ M    L P   T+N LI  LC+ +++ + +  ++
Sbjct: 91  IISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMA 150

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SR 456
            +   G  P+ +TY+ L+     +  +     L  + ++ G  PN+V +  +I G+C + 
Sbjct: 151 GIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTG 210

Query: 457 RYEKARTLNEHVLSFNSG-----RPQIEN------------KWTSLALMVYREAIVAGTI 499
               A  L++ +L+  S      +P I +            KW   A  ++ E +  G  
Sbjct: 211 NINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKE-AKRLFNEMVDQGVR 269

Query: 500 PTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
           P V   S ++  L         ++ +E + +           SLI+GF
Sbjct: 270 PDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGF 317


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 156/341 (45%), Gaps = 10/341 (2%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MFE 148
           T+  FN +M V A S   + A Q+L  + + G+  D   + TLI   +KSG + A    +
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-- 206
           +  E+  +G+ P+V TY  LI  C+++  +  A   +  M +   +PD   +NA+++   
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHG 339

Query: 207 -CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
            CG++   +R F  L E         PD IT  +L+ A A  G VD+     + + K   
Sbjct: 340 RCGKAEEAERLFRELVEKG-----FMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGF 394

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K     Y   I+   + G  + A  +YD+M   G  PD V  + +ID  G   ++  A +
Sbjct: 395 KKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGK 454

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L++  + G+   +I++S+L+ A +       A   ++ M +  +KP       ++    
Sbjct: 455 VLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFA 514

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
                 K + +   M +    P+   Y +LLVA  ++D  E
Sbjct: 515 RSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCE 555



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 146/315 (46%), Gaps = 2/315 (0%)

Query: 141  GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
            G++D ++ V  E+ +   + +  T   L+D  AKAG V +    Y  M++    P+  ++
Sbjct: 829  GRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLY 888

Query: 201  NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
             ++I+             ++AEM  E     PD   + AL+     AG  DR  +VY+ I
Sbjct: 889  RSMISLLCHHNRFRDVELMIAEM--EGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSI 946

Query: 261  HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             +  ++   + Y   I    ++   E   ++ ++M K+G+ P      +L+  +  A   
Sbjct: 947  LEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELR 1006

Query: 321  EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            E A +I +E +++   +    Y  +M    NA N  KA  L   MK   ++PT++TM+ L
Sbjct: 1007 EQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHIL 1066

Query: 381  ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
            +T+     Q  +   VL+++KS  L  +T+ YS +  A  +  D   G   L + K DGV
Sbjct: 1067 MTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGV 1126

Query: 441  IPNLVMFKCIIGMCS 455
             P+  ++ C I   S
Sbjct: 1127 EPDHQVWTCFIRAAS 1141



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 164/377 (43%), Gaps = 27/377 (7%)

Query: 23  HD--VSEQLHSYNRLIRQGRISECI------DLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           HD  +   L S+N LI     S C+      DLL ++ + GL   D + +    + C   
Sbjct: 248 HDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRP-DVITYNTLISACSQS 306

Query: 75  KAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
             +++A   F+ +      P L T+N ++SV      +E A ++ R + E G   D   Y
Sbjct: 307 SNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITY 366

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            +L+   AK G VD +     ++V AG + N  TY  +I    K G++  A G Y  MR+
Sbjct: 367 NSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRA 426

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
               PD V +  +I + G+   +  A  VL +M      + P  I   AL+ A A  G+ 
Sbjct: 427 MGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDA--GLKPTLIAFSALICAYAKGGRR 484

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
             A   +  +    +K     Y + ++  +++GD E    +Y  M      PD+     L
Sbjct: 485 ADAENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVL 544

Query: 311 IDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGAC--SNAKNWQKA-LELYEHMK 366
           +       K E   E++Q+ +    +++GIIS   +   C    AK  +KA L+ Y    
Sbjct: 545 LVALAKEDKCEEIEEVIQDMELLCRMNLGIISTMLIKARCVSQGAKLLKKACLQGY---- 600

Query: 367 SIKLKPTVSTMNALITA 383
               KP + ++ +++ A
Sbjct: 601 ----KPDIKSLRSIMNA 613



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 118/255 (46%), Gaps = 4/255 (1%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG--QVDRAREV 256
           VFNA++    +SG  D A  +L  M+     +DPD ++   L+ A + +G      A ++
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDTMHD--RGIDPDLVSFNTLINARSKSGCLAAGVALDL 280

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
              + +  ++     Y   I+ CSQ+ + E A +V++DM      PD    +A++   G 
Sbjct: 281 LFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVHGR 340

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            GK E A  + +E   +G     I+Y+SL+ A +   N  K     E +     K    T
Sbjct: 341 CGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEIT 400

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            N +I       +L   + +  +M+++G  P+ +TY++++ +  + + +     +L    
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMT 460

Query: 437 EDGVIPNLVMFKCII 451
           + G+ P L+ F  +I
Sbjct: 461 DAGLKPTLIAFSALI 475



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 116/552 (21%), Positives = 228/552 (41%), Gaps = 44/552 (7%)

Query: 21   YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI--- 77
            Y  D+       N  +   +  E + LLE +        D +       +C+ Q +I   
Sbjct: 600  YKPDIKSLRSIMNAYVMTEKHEEGLSLLECICEHVSFSQDLISECSIMLLCRKQTSISAY 659

Query: 78   -KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             + + R     P    + +  L++    ++    A QV   +Q  G++A   +Y ++I+T
Sbjct: 660  EQYSQRLMLKYPGQNCNLYEYLITCLIEAEFFSEACQVFCDMQFIGIEASKSIYESIIST 719

Query: 137  CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI---DGCAKAGQVAKAFGAYGIMRSKNV 193
              K G  +    +  + + +GI  N+ +   +I    G  K  Q A+     G+ ++  +
Sbjct: 720  YCKLGFPETAHRLMDDALQSGIPLNILSCRVIIIEAYGKIKLWQQAEIL-VKGLRQASGI 778

Query: 194  KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
              DR ++NALI A  +SG  ++A  V   M  +  P+ P   ++  +M+A    G++D  
Sbjct: 779  --DRRIWNALIHAYAESGLYEKARAVFDNM-IKTGPL-PTVDSVNGMMRALIVDGRLDEL 834

Query: 254  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
              V + +   N K +     + ++  ++ GD      +Y+ M   G +P+     ++I  
Sbjct: 835  YVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISL 894

Query: 314  AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              H  +      ++ E +  G    +   ++L+   + A N+ +  ++Y  +    L+P 
Sbjct: 895  LCHHNRFRDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPD 954

Query: 374  VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
              T N LI   C   +  +   +L++M   GL P   +Y  LL A  + +       L  
Sbjct: 955  EDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAE-------LRE 1007

Query: 434  QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF--NSG-RPQIENKWTSLALMVY 490
            QA +        +F+    M S+ Y+  R++   ++    N+G   + EN      L V 
Sbjct: 1008 QADQ--------IFE---EMRSKSYQLNRSIYHMMMKIYRNAGNHSKAEN-----LLAVM 1051

Query: 491  REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--- 547
            +E  +  TI T+ ++    G    P  A   E ++ NL  S+  +      ++ D +   
Sbjct: 1052 KEDGIEPTIATMHILMTSYGTAGQPREA---ENVLNNLKSSSLEVSTLPYSTVFDAYLKN 1108

Query: 548  GEYDPRAFSLLE 559
            G+Y+     LLE
Sbjct: 1109 GDYNHGTTKLLE 1120



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 140/311 (45%), Gaps = 15/311 (4%)

Query: 37   RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-------- 88
            + G + E + +   M+  G L    +Y +    +C   +     FR  +L+         
Sbjct: 862  KAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNR-----FRDVELMIAEMEGAGF 916

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             P L+  N L+++  ++ + +   QV R + EAGL+ D   Y TLI    +S + +  F 
Sbjct: 917  KPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFT 976

Query: 149  VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            + +EM   G+ P + +Y +L+   AKA    +A   +  MRSK+ + +R +++ ++    
Sbjct: 977  LLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYR 1036

Query: 209  QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             +G   +A ++LA M  +   ++P   T+  LM +   AGQ   A  V   +   +++ +
Sbjct: 1037 NAGNHSKAENLLAVMKED--GIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVS 1094

Query: 269  PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
               Y+   +   + GD+    +   +M + GV PD    +  I  A    +   A  +L+
Sbjct: 1095 TLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCEQTADAILLLK 1154

Query: 329  EAKNQGISVGI 339
              ++ G  + I
Sbjct: 1155 SLQDCGFDLPI 1165



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 130/272 (47%), Gaps = 16/272 (5%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
           ++      PD V F  ++ A G+S    A+D AF+ LA  +A      P    +  ++  
Sbjct: 147 VLDGARASPDEVAF--VVRAVGESSWRRALD-AFEWLARSSA------PASRAVAVVLGV 197

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
              A Q   A EV+  +       T +V+   +   +++G ++ A  + D M  +G+ PD
Sbjct: 198 LGRARQDSIAEEVF--LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPD 255

Query: 304 EVFLSALIDFAGHAGKVEA--AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
            V  + LI+    +G + A  A ++L E +  G+   +I+Y++L+ ACS + N + A+ +
Sbjct: 256 LVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTV 315

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           +E M + + +P + T NA+++      +  +   +  ++   G  P+ ITY+ LL A  +
Sbjct: 316 FEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAK 375

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
           + +V+       Q  + G   N + +  +I M
Sbjct: 376 EGNVDKVEHTCEQLVKAGFKKNEITYNTMIHM 407



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/316 (20%), Positives = 131/316 (41%), Gaps = 9/316 (2%)

Query: 93   STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            ST  +L+   A + D     ++   ++ AG   +  LY ++I+      +   +  +  E
Sbjct: 851  STVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAE 910

Query: 153  MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
            M  AG +P++    AL++    AG   +    Y  +    ++PD   +N LI    +S  
Sbjct: 911  MEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFR 970

Query: 213  VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
             +  F +L EM      + P   +  +L+ A A A   ++A ++++ +   + +    +Y
Sbjct: 971  PEEGFTLLNEMGK--RGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIY 1028

Query: 273  TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
             + +      G+   A ++   M + G+ P    +  L+   G AG+   A  +L   K+
Sbjct: 1029 HMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKS 1088

Query: 333  QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA--LCDGDQL 390
              + V  + YS++  A     ++         MK   ++P        I A  LC+    
Sbjct: 1089 SSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAASLCE---- 1144

Query: 391  PKTMEVLSDMKSLGLC 406
             +T + +  +KSL  C
Sbjct: 1145 -QTADAILLLKSLQDC 1159



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 90/208 (43%), Gaps = 9/208 (4%)

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           + +P+     +    ++  W  A   ++ + +    P    ++ ++   G A +   A E
Sbjct: 152 RASPDEVAFVVRAVGESS-WRRALDAFEWLARSSA-PASRAVAVVLGVLGRARQDSIAEE 209

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +      +G +V +  ++++MG  + +  +  A +L + M    + P + + N LI A  
Sbjct: 210 VFLRFAGEGATVQV--FNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARS 267

Query: 386 DGDQLPK--TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
               L     +++L +++  GL P+ ITY+ L+ AC +  ++E  + +          P+
Sbjct: 268 KSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPD 327

Query: 444 LVMFKCII---GMCSRRYEKARTLNEHV 468
           L  +  ++   G C +  E  R   E V
Sbjct: 328 LWTYNAMVSVHGRCGKAEEAERLFRELV 355


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 190/436 (43%), Gaps = 21/436 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP--- 88
           N L R+GR+ E + LL+ M   GL   D++ +  F + +CK    +       K+     
Sbjct: 190 NGLCREGRVVEAVALLDRMVENGL-QPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISH 248

Query: 89  -NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             P +  ++ ++  +C   + S+ +  +   +Q+ G+  +   Y  +I     SG+  A 
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSD-SHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAA 307

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +  EM+   I PNV TY ALI+   K G+  +A   Y  M  + + P+ + +N++I  
Sbjct: 308 QRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDG 367

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   +D A D+   M  +     PD  T   L+     A ++D   E+   + +  + 
Sbjct: 368 FCKQDRLDAAEDMFYLMATK--GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLV 425

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y   I+     GD   A  +   M   GV PD V  + L+D     GK++ A E+
Sbjct: 426 ANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEM 485

Query: 327 LQEAKN-----------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            +  +             G+   +++Y+ L+    N   + +A ELYE M    + P   
Sbjct: 486 FKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTI 545

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T +++I  LC   +L +  ++   M S    PN +T++ L+    +   V+ GL L  + 
Sbjct: 546 TYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM 605

Query: 436 KEDGVIPNLVMFKCII 451
              G++ + +++  +I
Sbjct: 606 GRRGIVADAIIYITLI 621



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 173/389 (44%), Gaps = 18/389 (4%)

Query: 75  KAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           K +++A   F    +  P P++  FN LM      +  +    + + ++   ++ D   +
Sbjct: 60  KGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSF 119

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T LI       K+      F ++   G+ P+V T+  L+ G     +V++A   +     
Sbjct: 120 TILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLF----H 175

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQ 249
           +  +PD + F  L+    + G V  A  +L  M    + + PD IT G  +   C     
Sbjct: 176 QICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVE--NGLQPDQITYGTFVDGMCKMGDT 233

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           V     + KM    +IK    +Y+  I+   + G    + +++ +M  KG+ P+ V  + 
Sbjct: 234 VSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNC 293

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           +I     +G+  AA  +LQE   + IS  +++Y++L+ A      + +A ELY+ M    
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG 353

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACERKDDVE 426
           + P   T N++I   C  D+L    ++   M + G  P+  T++ L+      +R DD  
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDD-- 411

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            G+ LL +    G++ N V +  +I G C
Sbjct: 412 -GMELLHEMPRRGLVANTVTYNTLIHGFC 439



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 155/362 (42%), Gaps = 6/362 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +F +L+    S      A      + + GL  D   +TTL+       +V    ++FH++
Sbjct: 118 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI 177

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                 P+V T+  L++G  + G+V +A      M    ++PD++ +   +    + G  
Sbjct: 178 C----RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDT 233

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++L +M  E+  + P+ +   A++      G+   +  ++  +    I      Y 
Sbjct: 234 VSALNLLRKME-EISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYN 292

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I     +G W  A  +  +M ++ + P+ V  +ALI+     GK   A E+  E   +
Sbjct: 293 CMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPR 352

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI    I+Y+S++           A +++  M +    P V T   LI   C   ++   
Sbjct: 353 GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDG 412

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
           ME+L +M   GL  NT+TY+ L+       D+   L L  Q    GV P++V    ++ G
Sbjct: 413 MELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG 472

Query: 453 MC 454
           +C
Sbjct: 473 LC 474



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 173/412 (41%), Gaps = 26/412 (6%)

Query: 15  NGKHANYAHDVSEQLH---------SYNRLIR----QGRISECIDLLEDMERKGLLDMDK 61
           +G+H++ +H++  ++          +YN +I      GR S    LL++M  + +     
Sbjct: 266 DGRHSD-SHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVV 324

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            Y+A      K  K  + A  + +++P    P   T+N ++         + A  +  L+
Sbjct: 325 TYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM 384

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
              G   D   +TTLI     + ++D   E+ HEM   G+  N  TY  LI G    G +
Sbjct: 385 ATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDL 444

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------VHP--- 229
             A      M S  V PD V  N L+     +G +  A ++   M          HP   
Sbjct: 445 NAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNG 504

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           V+PD +T   L+    N G+   A E+Y+ +    I      Y+  I+   +    + A 
Sbjct: 505 VEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 564

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            ++  M  K   P+ V  + LI+    AG+V+   E+  E   +GI    I Y +L+   
Sbjct: 565 QMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGF 624

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
               N   AL++++ M S  + P   T+  ++T     ++L + + +L D++
Sbjct: 625 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           +VP+ T++  +M+  +C  S+  E A Q+   +       +   + TLI    K+G+VD 
Sbjct: 540 IVPD-TITYSSMIDGLCKQSRLDE-ATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDD 597

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
             E+F EM   GI  +   Y  LI G  K G +  A   +  M S  V PD +    ++T
Sbjct: 598 GLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLT 657

Query: 206 ACGQSGAVDRAFDVLAEMNAEV 227
                  ++RA  +L ++   V
Sbjct: 658 GFWSKEELERAVAMLEDLQMSV 679


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 198/441 (44%), Gaps = 21/441 (4%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + LVP+    TF  +M       D +GA ++   + E G          ++    K G+V
Sbjct: 218 YGLVPDE--KTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRV 275

Query: 144 DAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +       EM N  G  P+ +T+  L++G  KAG V  A     +M  +   PD   +N+
Sbjct: 276 EDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNS 335

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I+   + G V  A +VL +M        P+ +T   L+       QV+ A E+ +++  
Sbjct: 336 VISGLCKLGEVKEAVEVLDQMIT--RDCSPNTVTYNTLISTLCKENQVEEATELARVLTS 393

Query: 263 YNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             I   P+V T    I     T +   A  ++++M  KG  PDE   + LID     GK+
Sbjct: 394 KGI--LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A  +L++ +  G +  +I+Y++L+     A   ++A E+++ M+   +     T N L
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I  LC   ++    +++  M   G  P+  TY+ LL    R  D++    ++     +G 
Sbjct: 512 IDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571

Query: 441 IPNLVMFKCII-GMC-SRRYEKARTLNEHV------LSFNSGRPQIE----NKWTSLALM 488
            P++V +  +I G+C + R E A  L   +      L+ ++  P I+     + T+ A+ 
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAIN 631

Query: 489 VYREAIVAGTIPTVEVVSKVL 509
           ++RE +     P   V  +++
Sbjct: 632 LFREMLEQNEAPPDAVSYRIV 652



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 186/438 (42%), Gaps = 47/438 (10%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           STF +L+   A  +  +    V+  ++ E GLK D   Y  ++      G    + E+ H
Sbjct: 119 STFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV-DGNSLKLVEISH 177

Query: 152 -EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M   GI+P+V T+  LI    +A Q+  A      M S  + PD   F  ++    + 
Sbjct: 178 AKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEE 237

Query: 211 GAVDRAFDVLAEM------------NAEVHPV----------------------DPDHIT 236
           G +D A  +  +M            N  VH                         PD  T
Sbjct: 238 GDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYT 297

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDD 294
              L+     AG V  A E+  ++ +      P+VYT    I+   + G+ + A  V D 
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYD--PDVYTYNSVISGLCKLGEVKEAVEVLDQ 355

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M  +   P+ V  + LI       +VE A E+ +   ++GI   + +++SL+      +N
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            + A+EL+E M+S   +P   T N LI +LC   +L + + +L  M+  G   + ITY+ 
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFN 472
           L+    + +       +  + +  GV  N V +  +I G+C SRR E A  L + ++   
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM-- 533

Query: 473 SGRPQIENKWTSLALMVY 490
               Q  +K+T  +L+ +
Sbjct: 534 --EGQKPDKYTYNSLLTH 549



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/156 (19%), Positives = 68/156 (43%), Gaps = 1/156 (0%)

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           K    P+      ++   G +G  +   +IL++ K+    +G  ++  L+ + +  +   
Sbjct: 76  KPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQD 135

Query: 357 KALELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           + L + + M     LKP     N ++  L DG+ L       + M   G+ P+  T+++L
Sbjct: 136 EILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVL 195

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + A  R   +   +++L      G++P+   F  ++
Sbjct: 196 IKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVM 231


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 167/411 (40%), Gaps = 41/411 (9%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAM 146
           P+P + +  +   +  S   S  A + LR    AG    D   + TL+   A++G +  M
Sbjct: 97  PSPRILSALLYKILSRSPSSSADAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGM 156

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS--KNVKPDRVVFNALI 204
            ++F  M +A + PNV TYG L+ G  KAG+V  A      M     +V PD V+ N ++
Sbjct: 157 TQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIV 216

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               ++G + +A   + E    VH   P+ +T   L  A   AG V  A E+   + K  
Sbjct: 217 DGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKER 276

Query: 265 I-------------------------------------KGTPEVYTIAINCCSQTGDWEF 287
           +                                     +G    Y+  +     T +   
Sbjct: 277 VTPNAVTLNTIVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGV 336

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  ++ +M  +G  PD +    +I     AG+++ A+ +    K  G  +   +Y+ L+G
Sbjct: 337 AMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIG 396

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                K   +A EL   MK   L+P V T N L++ LC         E+L  M   G  P
Sbjct: 397 GFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRP 456

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSRR 457
           + +T+  L+    +   ++  L +     E G+ PN V++  +I  +C  R
Sbjct: 457 SVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSR 507



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 118/287 (41%), Gaps = 37/287 (12%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y+TL+     +  V    E+FHEMV+ G  P+   Y  +I G  +AG++  A+     M+
Sbjct: 321 YSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMK 380

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               + D   +N LI    +   ++ A+++L EM      + PD                
Sbjct: 381 KAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAG--LQPD---------------- 422

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
                     ++ YN        T+    C + GD+     +   M   G  P  V    
Sbjct: 423 ----------VYTYN--------TLLSGLC-KAGDFLAVDELLGKMIDGGCRPSVVTFGT 463

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI      G+++ A  I +     GI    + Y++L+     +++   A+EL++ M+   
Sbjct: 464 LIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKH 523

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +   V+T NAL+  L D +   K  E++  M+     P+ +T  IL+
Sbjct: 524 VPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILM 570



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 95/182 (52%), Gaps = 4/182 (2%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N+L+      K    A+++L  ++EAGL+ D   Y TL++   K+G   A+ E+  +M+
Sbjct: 391 YNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMI 450

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           + G  P+V T+G LI G  K GQ+ +A   +  M    ++P+ V++N LI    +S    
Sbjct: 451 DGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTS 510

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A ++  EM  E H V  +  T  AL+K   +    ++A E+  ++ +   + TP+  TI
Sbjct: 511 LAIELFDEMR-EKH-VPANVTTFNALLKGLRDKNMPEKAFELMDLMREG--RCTPDYVTI 566

Query: 275 AI 276
            I
Sbjct: 567 DI 568



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 7/224 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + GR+ +   +   M++ G     K Y+      C+ +K + EA+     +      P
Sbjct: 363 LTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCR-RKRLNEAYELLGEMKEAGLQP 421

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + T+N L+S    + D     ++L  + + G +     + TLI    K G++D    +F
Sbjct: 422 DVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIF 481

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M  +GI+PN   Y  LID   K+   + A   +  MR K+V  +   FNAL+      
Sbjct: 482 RSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGLRDK 541

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
              ++AF+++  M        PD++TI  LM+     G+ DR +
Sbjct: 542 NMPEKAFELMDLMREGR--CTPDYVTIDILMEWLPVIGETDRLK 583



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/461 (19%), Positives = 157/461 (34%), Gaps = 79/461 (17%)

Query: 70  VCKSQKAIKEAFRFFK-----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           + +S  +  +A RF +       P P  S FN L+   A + D  G  Q+   +++A ++
Sbjct: 110 LSRSPSSSADAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVR 169

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---------------------------- 156
            +   Y  L+    K+G+V     V   M                               
Sbjct: 170 PNVVTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAV 229

Query: 157 -----------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
                      G  PN  TY  L     +AG V  A      M  + V P+ V  N ++ 
Sbjct: 230 KFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVG 289

Query: 206 ACGQSGAVDRAFDVLAE------------------MNAEVHP-------------VD--- 231
                G V  A +   E                  + A +H              VD   
Sbjct: 290 GLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGN 349

Query: 232 -PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD I    ++     AG++D A  +   + K   +   + Y I I    +      A  
Sbjct: 350 SPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYE 409

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +  +M + G+ PD    + L+     AG   A  E+L +  + G    ++++ +L+    
Sbjct: 410 LLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYC 469

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
                 +AL ++  M    ++P     N LI  LC        +E+  +M+   +  N  
Sbjct: 470 KVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVT 529

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           T++ LL     K+  E    L+   +E    P+ V    ++
Sbjct: 530 TFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILM 570


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 190/436 (43%), Gaps = 21/436 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP--- 88
           N L R+GR+ E + LL+ M   GL   D++ +  F + +CK    +       K+     
Sbjct: 190 NGLCREGRVVEAVALLDRMVENGL-QPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISH 248

Query: 89  -NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             P +  ++ ++  +C   + S+ +  +   +Q+ G+  +   Y  +I     SG+  A 
Sbjct: 249 IKPNVVIYSAIIDGLCKDGRHSD-SHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAA 307

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +  EM+   I PNV TY ALI+   K G+  +A   Y  M  + + P+ + +N++I  
Sbjct: 308 QRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDG 367

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   +D A D+   M  +     PD  T   L+     A ++D   E+   + +  + 
Sbjct: 368 FCKQDRLDAAEDMFYLMATK--GCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLV 425

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y   I+     GD   A  +   M   GV PD V  + L+D     GK++ A E+
Sbjct: 426 ANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEM 485

Query: 327 LQEAKN-----------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            +  +             G+   +++Y+ L+    N   + +A ELYE M    + P   
Sbjct: 486 FKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTI 545

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T +++I  LC   +L +  ++   M S    PN +T++ L+    +   V+ GL L  + 
Sbjct: 546 TYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEM 605

Query: 436 KEDGVIPNLVMFKCII 451
              G++ + +++  +I
Sbjct: 606 GRRGIVADAIIYITLI 621



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 173/389 (44%), Gaps = 18/389 (4%)

Query: 75  KAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           K +++A   F    +  P P++  FN LM      +  +    + + ++   ++ D   +
Sbjct: 60  KGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSF 119

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T LI       K+      F ++   G+ P+V T+  L+ G     +V++A   +     
Sbjct: 120 TILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLF----H 175

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQ 249
           +  +PD + F  L+    + G V  A  +L  M    + + PD IT G  +   C     
Sbjct: 176 QICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVE--NGLQPDQITYGTFVDGMCKMGDT 233

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           V     + KM    +IK    +Y+  I+   + G    + +++ +M  KG+ P+ V  + 
Sbjct: 234 VSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNC 293

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           +I     +G+  AA  +LQE   + IS  +++Y++L+ A      + +A ELY+ M    
Sbjct: 294 MIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRG 353

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACERKDDVE 426
           + P   T N++I   C  D+L    ++   M + G  P+  T++ L+      +R DD  
Sbjct: 354 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDD-- 411

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            G+ LL +    G++ N V +  +I G C
Sbjct: 412 -GMELLHEMPRRGLVANTVTYNTLIHGFC 439



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 155/362 (42%), Gaps = 6/362 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +F +L+    S      A      + + GL  D   +TTL+       +V    ++FH++
Sbjct: 118 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI 177

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
                 P+V T+  L++G  + G+V +A      M    ++PD++ +   +    + G  
Sbjct: 178 C----RPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDT 233

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++L +M  E+  + P+ +   A++      G+   +  ++  +    I      Y 
Sbjct: 234 VSALNLLRKME-EISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYN 292

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I     +G W  A  +  +M ++ + P+ V  +ALI+     GK   A E+  E   +
Sbjct: 293 CMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPR 352

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           GI    I+Y+S++           A +++  M +    P V T   LI   C   ++   
Sbjct: 353 GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDG 412

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
           ME+L +M   GL  NT+TY+ L+       D+   L L  Q    GV P++V    ++ G
Sbjct: 413 MELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG 472

Query: 453 MC 454
           +C
Sbjct: 473 LC 474



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 174/416 (41%), Gaps = 26/416 (6%)

Query: 15  NGKHANYAHDVSEQLH---------SYNRLIR----QGRISECIDLLEDMERKGLLDMDK 61
           +G+H++ +H++  ++          +YN +I      GR S    LL++M  + +     
Sbjct: 266 DGRHSD-SHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVV 324

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            Y+A      K  K  + A  + +++P    P   T+N ++         + A  +  L+
Sbjct: 325 TYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLM 384

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
              G   D   +TTLI     + ++D   E+ HEM   G+  N  TY  LI G    G +
Sbjct: 385 ATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDL 444

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------VHP--- 229
             A      M S  V PD V  N L+     +G +  A ++   M          HP   
Sbjct: 445 NAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNG 504

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           V+PD +T   L+    N G+   A E+Y+ +    I      Y+  I+   +    + A 
Sbjct: 505 VEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 564

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            ++  M  K   P+ V  + LI+    AG+V+   E+  E   +GI    I Y +L+   
Sbjct: 565 QMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGF 624

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
               N   AL++++ M S  + P   T+  ++T     ++L + + +L D++   L
Sbjct: 625 RKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQRYQL 680


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 189/414 (45%), Gaps = 15/414 (3%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SVCASS 105
           M  KG L  +  Y       C++++ + EA + F  +      PT+ T+ +++ ++C   
Sbjct: 265 MPNKGCLRNEVSYTNLIHGFCEARR-VDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLG 323

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
           + +E A  + + + E   + +   YT LI +  +    D   ++ + M+  G+ P+V TY
Sbjct: 324 RKTE-ALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTY 382

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
            ALIDG  K G  A A     +M S N  P+   +N LI    +   + +A  +L +M  
Sbjct: 383 NALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLE 442

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
               + P+ +T   L+      G +  A ++  ++++  +      Y++ I+   + G  
Sbjct: 443 R--KLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLV 500

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
           E A S+++ + +KG+  +EV  S LID     GKV     +L +  + G     I+Y+SL
Sbjct: 501 EEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSL 560

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +      KN+++A  L + M    ++P   T   LI  L   D+  +  ++   M S G 
Sbjct: 561 IDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGS 620

Query: 406 CPNTITYSILLVA-CE--RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            P+   Y+  + A C   R  D EV   L+ +    G++P+ +++   I    R
Sbjct: 621 HPDVFIYTAFIHAYCSHGRLKDAEV---LICKMNAKGIMPDTMLYTLFIDAYGR 671



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 186/426 (43%), Gaps = 19/426 (4%)

Query: 57  LDMDKVYHARFFNVCKSQKAIKEAFR-----FFKLVPNPTLSTF-NMLMSVCASSKDSEG 110
           L++D      FFN    +   K   +        LVPN  L    NM + +  S+  SE 
Sbjct: 86  LNLDPQTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIKSTDSSEN 145

Query: 111 AFQVLRLVQEAGLKADC-------KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
           A  VL +++    + D        + Y  L+   ++   +D M  V+ EM++  + PN+ 
Sbjct: 146 ALFVLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIF 205

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
           T   +++G  K G V +A      +    +  D   + +LI    ++  VD A  +   M
Sbjct: 206 TLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSM 265

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
             +      + ++   L+     A +VD A +++  +H+ N   T   YT+ I    Q G
Sbjct: 266 PNK--GCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLG 323

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
               A +++ +MT+K   P+    + LI         + A +IL     +G+   +++Y+
Sbjct: 324 RKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYN 383

Query: 344 SLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402
           +L+ G C    +   ALE+   M+S    P   T N LI   C G  + K M +L  M  
Sbjct: 384 ALIDGYCKKGLS-ASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLE 442

Query: 403 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEK 460
             L PN +TY+IL+    ++ D+     LLS   E G++P+   +   I    +R   E+
Sbjct: 443 RKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEE 502

Query: 461 ARTLNE 466
           AR+L E
Sbjct: 503 ARSLFE 508



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 149/369 (40%), Gaps = 44/369 (11%)

Query: 90  PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T N M+   C      E    V ++VQ AGL  D   YT+LI    ++  VDA   
Sbjct: 202 PNIFTLNTMVNGYCKLGNVVEAELYVSKIVQ-AGLSLDTFTYTSLILGYCRNKNVDAANA 260

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  M N G   N  +Y  LI G  +A +V +A   +  M   N  P    +  +I A  
Sbjct: 261 IFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALC 320

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           Q G    A ++  EM                  K C                        
Sbjct: 321 QLGRKTEALNMFKEMTE----------------KHCQ----------------------- 341

Query: 269 PEVYTIAINCCSQTGDWEF--ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P V+T  +  CS   D  F  A  + + M +KG+IP  V  +ALID     G   +A EI
Sbjct: 342 PNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEI 401

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L   ++   S    +Y+ L+      KN  KA+ L   M   KL+P V T N LI   C 
Sbjct: 402 LSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCK 461

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L    ++LS M   GL P+  TYS+ +    ++  VE    L    KE G+  N V+
Sbjct: 462 EGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVI 521

Query: 447 FKCII-GMC 454
           +  +I G C
Sbjct: 522 YSTLIDGYC 530



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 169/424 (39%), Gaps = 42/424 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRF 83
           +YN LI    ++G  +  +++L  ME        + Y+      C+ +   KA+    + 
Sbjct: 381 TYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKM 440

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P + T+N+L+       D   A+++L L+ E+GL  D   Y+  I T  K G V
Sbjct: 441 LERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLV 500

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +    +F  +   GI+ N   Y  LIDG  K G+V+        M S    P+ + +N+L
Sbjct: 501 EEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSL 560

Query: 204 ITA-CGQSGAVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQVDRAREVYKMIH 261
           I   C +    +    V   +  ++ P  D   I I  L+K      + D+A +++  + 
Sbjct: 561 IDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKD----DEFDQAHDMFDQML 616

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                    +YT  I+     G  + A  +   M  KG++PD +  +  ID  G  G ++
Sbjct: 617 STGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSID 676

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAK---------------------------- 353
            AF IL+     G      +YS L+   SNAK                            
Sbjct: 677 GAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRR 736

Query: 354 -NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            +++  L+L+  M      P  +T    IT LC    L     +   MK  G  PN   Y
Sbjct: 737 VDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIY 796

Query: 413 SILL 416
           + LL
Sbjct: 797 NSLL 800



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 152/361 (42%), Gaps = 19/361 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL-----V 87
           + L ++G + E   L E ++ KG+   + +Y       CK  K     F   K+     V
Sbjct: 492 DTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCV 551

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           PN    T+N L+      K+ + A  ++ ++ +  ++     YT LI    K  + D   
Sbjct: 552 PNSI--TYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAH 609

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++F +M++ G  P+V  Y A I      G++  A      M +K + PD +++   I A 
Sbjct: 610 DMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAY 669

Query: 208 GQSGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           G+ G++D AF +L  M    H V  +P + T   L+K  +NA    + +EV         
Sbjct: 670 GRFGSIDGAFGILKRM----HEVGCEPSYYTYSCLIKHLSNA----KPKEVSSSSEL--S 719

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
             +  V +   + C +  D+EF   ++  M + G  P+       I      G +E A  
Sbjct: 720 DLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHR 779

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +    K +G S     Y+SL+G       + +A+   + M   +  P + +   L+  L 
Sbjct: 780 LFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLY 839

Query: 386 D 386
           D
Sbjct: 840 D 840


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 195/422 (46%), Gaps = 45/422 (10%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P +  FN ++S    +K    A  + + ++  G+ +D   +  LI   ++ G     F
Sbjct: 66  PTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSF 125

Query: 148 EVFHEMVNAGIEPNVHT-----------------------------------YGALIDGC 172
            VF +++  G +PN  T                                   YG LI+G 
Sbjct: 126 SVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGL 185

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
            K G++  A      +  K V+P+ V++N +I    ++  V+ AFD+ ++M A+   + P
Sbjct: 186 CKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAK--RISP 243

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFAC 289
           D  T  +L+      GQ+   +E   ++HK  ++   P +YT  I ++   + G  + A 
Sbjct: 244 DDFTCNSLIYGFCIMGQL---KEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAK 300

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            +     KK +I D V  ++L+D      ++  A +I     ++G+   + SY++++   
Sbjct: 301 MMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGL 360

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
              K   +A+ L+E M+  K+ P V T N+LI  L    ++   ++++ +M   G  PN 
Sbjct: 361 CKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNI 420

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEH 467
           ITY+ +L A  +   V+  + LL+  K+ G+ P++  +  +I G+C S + E A+ + E 
Sbjct: 421 ITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFED 480

Query: 468 VL 469
           +L
Sbjct: 481 LL 482



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 167/342 (48%), Gaps = 2/342 (0%)

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
            A Q+L+ V    ++ +  +Y  +I    K+  V+  F+++ +MV   I P+  T  +LI
Sbjct: 193 AALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLI 252

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
            G    GQ+ +A G    M  +N+ P    F+ L+ A  + G V  A  +L     +   
Sbjct: 253 YGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKK--D 310

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           +  D +T  +LM       ++++A++++  +    +    + YT  IN   +    + A 
Sbjct: 311 IILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAV 370

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
           +++++M  + +IP+ V  ++LID  G  GK+    +++ E  ++G    II+Y+S++ A 
Sbjct: 371 NLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDAL 430

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
               +  KA+ L  ++K   ++P + T   LI  LC   +L    +V  D+   G   + 
Sbjct: 431 CKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDV 490

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            TY++++     K   +  L LLS+ +++G IPN   ++ +I
Sbjct: 491 YTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVI 532



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 6/212 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+N LM      K+   A  +   +   G+ A+ + YTT+I    K   VD    +F EM
Sbjct: 317 TYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEM 376

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               I PNV TY +LIDG  K G+++        M  +   P+ + +N+++ A  ++  V
Sbjct: 377 RCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHV 436

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK--MIHKYNIKGTPEV 271
           D+A  +L   N +   + PD  T   L+K    +G+++ A++V++  ++  YN+      
Sbjct: 437 DKAIALLT--NLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLD--VYT 492

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
           YT+ I      G ++ A ++   M   G IP+
Sbjct: 493 YTVMIQGFCVKGLFDAALALLSKMEDNGCIPN 524



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 116/269 (43%), Gaps = 3/269 (1%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           ++  KN  P  + FN ++++  ++     A  +  +M  E++ +  D  T   L+   + 
Sbjct: 60  LLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQM--ELNGIVSDFFTFNILINCFSQ 117

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G    +  V+  I K         +   I      G    A + +D +  +G   D+V 
Sbjct: 118 LGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVS 177

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
              LI+     G++ AA ++L+    + +    + Y+ ++     AK    A +LY  M 
Sbjct: 178 YGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMV 237

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           + ++ P   T N+LI   C   QL + + +L  M    + P   T+SIL+ A  ++  V+
Sbjct: 238 AKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVK 297

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
              M+L    +  +I ++V +  ++ G C
Sbjct: 298 EAKMMLGVTMKKDIILDVVTYNSLMDGYC 326


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 171/365 (46%), Gaps = 17/365 (4%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           ++ +M+  G+     VY+A    + K++   KA++   R  K        T+ ++++V  
Sbjct: 244 VISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYG 303

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
            SK    A ++   +Q  G KA+   YT L+   A+ G  +   EVF +M  AG EP+V+
Sbjct: 304 KSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVY 363

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVL 220
            Y AL++  ++AG    A   + +M+    +PDR  +N L+ A G++G     +  F+ L
Sbjct: 364 AYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFESL 423

Query: 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
            +    + P    H+    L+ A A +G V R  +V   +HK  ++         ++  +
Sbjct: 424 KQQG--MAPTMKSHML---LLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYA 478

Query: 281 QTG---DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GI 335
           + G   D E   +  D      V    V ++A    AG+ G++EAAFE ++  K +  GI
Sbjct: 479 RAGRLDDMERLLAAMDLAGSADVGSHNVAVNAYAR-AGYLGRMEAAFEGIRRRKGKKGGI 537

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              ++S++S MG  +  K + K LE++E M      P   T   L+ A  D  Q+ +   
Sbjct: 538 DADVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCYPDAGTAKVLMAACSDERQVEQVAA 597

Query: 396 VLSDM 400
           ++  M
Sbjct: 598 IVRSM 602



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 129/319 (40%), Gaps = 8/319 (2%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N+L+      +    A  +   V EA        Y  L+     +  +     
Sbjct: 184 RPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEG 243

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  EM   GI P+   Y A +DG  KA    KA   Y  M+ +  + +   +  +I   G
Sbjct: 244 VISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYG 303

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +S     A  +  EM +       +  T  AL+ A A  G  ++A EV++ + +   +  
Sbjct: 304 KSKQPMSAMKIFNEMQS--IGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPD 361

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAFE 325
              Y   +   S+ G  + A  ++  M   G  PD    + L+D  G AG   + EA FE
Sbjct: 362 VYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHREAEATFE 421

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            L   K QG++  + S+  L+ A + + N  +  ++   +    L+P    +NA++ A  
Sbjct: 422 SL---KQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYA 478

Query: 386 DGDQLPKTMEVLSDMKSLG 404
              +L     +L+ M   G
Sbjct: 479 RAGRLDDMERLLAAMDLAG 497



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 133/313 (42%), Gaps = 5/313 (1%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           +V  +  + D   Y  LI    +  +++    ++  ++ A   P   TY  L+     A 
Sbjct: 177 IVYRSSFRPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNAR 236

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
            + +A G    M+   + P   V+NA +    ++    +A +V   M  E    + +  T
Sbjct: 237 SLHRAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYT 296

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           +  ++     + Q   A +++  +     K     YT  +N  ++ G  E A  V++ M 
Sbjct: 297 L--MINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQ 354

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           + G  PD    +AL++    AG  + A EI    ++ G      SY+ L+ A   A   +
Sbjct: 355 QAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHR 414

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A   +E +K   + PT+ +   L++A      + +  +V++ +   GL P+T   + +L
Sbjct: 415 EAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAML 474

Query: 417 VACERK---DDVE 426
            A  R    DD+E
Sbjct: 475 HAYARAGRLDDME 487



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 81/185 (43%)

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y + I+   +      A S+Y  + +   +P E   + L+    +A  +  A  ++ E +
Sbjct: 190 YNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEGVISEMQ 249

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             GI      Y++ +     A+   KA+E+Y+ MK  + +    T   +I       Q  
Sbjct: 250 EHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPM 309

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
             M++ ++M+S+G   N  TY+ L+ A  R+   E    +  Q ++ G  P++  +  ++
Sbjct: 310 SAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNALM 369

Query: 452 GMCSR 456
              SR
Sbjct: 370 EAYSR 374



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 85/182 (46%), Gaps = 16/182 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ +  +L+S  A S +     QV+  + ++GL+ D      ++   A++G++D M  +
Sbjct: 430 PTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDMERL 489

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVK----PDRVVFNALI 204
              M  AG   +V ++   ++  A+AG + +   A+ GI R K  K     D V + + +
Sbjct: 490 LAAMDLAG-SADVGSHNVAVNAYARAGYLGRMEAAFEGIRRRKGKKGGIDADVVSWTSRM 548

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRAREVYKMI 260
               +     +  ++  EM      VD    PD  T   LM AC++  QV++   + + +
Sbjct: 549 GGYARKKEYGKCLEIFEEM------VDAGCYPDAGTAKVLMAACSDERQVEQVAAIVRSM 602

Query: 261 HK 262
           HK
Sbjct: 603 HK 604


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 180/393 (45%), Gaps = 13/393 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPNP--- 90
           L + GR+   + LLE M ++G    D   H+   N +CK+ K I+EA  F + +      
Sbjct: 384 LCKAGRVDSALSLLETMIKRGYCP-DMATHSMLINELCKADK-IQEAQEFLQGMDRKISS 441

Query: 91  ---TLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              +  ++N L++    +K    AF +   +V E     D   Y+ LI    K  ++   
Sbjct: 442 RSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRA 501

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            +++ +M++    PNV TY A ++G  + G++A A G Y  M +    PD + ++ LI  
Sbjct: 502 EKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHG 561

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
              +   D+A ++   M +      P+ +T   L+       + D A E+++ + +    
Sbjct: 562 FSLARKHDQAHELFETMIS--RGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCD 619

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                YT  +      G  E A  V+D+M  KG  PD V  + L+     AGK   A ++
Sbjct: 620 PDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQL 679

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALC 385
            Q   ++      +S++ ++   S AK    A+E++E M+      P + T N+LI  LC
Sbjct: 680 FQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLC 739

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
              +L + M+V  ++  L L P+   +++LL A
Sbjct: 740 GEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEA 772



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 131/571 (22%), Positives = 237/571 (41%), Gaps = 54/571 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVP 88
            + Q +  E   L   M + G      +Y       CK +  + EAF+ F         P
Sbjct: 244 FVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLEN-LDEAFKLFLEMAVESKAP 302

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
              ++    L  +C S K  E AF+  R +QE+ L +   +Y  LI    +SG++D   E
Sbjct: 303 LNNVAWTAFLSGLCKSGK-IEQAFEACRTMQES-LSSSQPVYDMLIRLLIESGRIDKAEE 360

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
              E+    I+P+  T  ++I    KAG+V  A      M  +   PD    + LI    
Sbjct: 361 ACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELC 420

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKG 267
           ++  +  A + L  M+ ++        +  +L+ +   A +V +A  ++  M+ + +   
Sbjct: 421 KADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSF-- 478

Query: 268 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P+V  Y+I I+   +  +   A  +Y  M     +P+    +A ++     G++  A  
Sbjct: 479 VPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQG 538

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           + +E    G S  +I+YS+L+   S A+   +A EL+E M S   +P   T N L+  LC
Sbjct: 539 VYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLC 598

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
              +  +  E+   M   G  P+ +TY+ LL        +E  + +  +    G  P++V
Sbjct: 599 KESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVV 658

Query: 446 MFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEV 504
            + C++ G                  F +G+P    +     +MV R+     T+    +
Sbjct: 659 AYNCLLKGF-----------------FRAGKPGEAKQL--FQVMVSRQC-KPDTVSHNIM 698

Query: 505 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDG----------FGEY---- 550
           +  +    +L    ++ ER+ ++ G S D +  ++L   + G          F E     
Sbjct: 699 IDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLK 758

Query: 551 ---DPRAFSLLEEAASFGIVPC--VSFKEIP 576
              DP AF++L EA   GIV    + FK+ P
Sbjct: 759 LSPDPHAFNVLLEAIKCGIVYQFEIRFKDPP 789



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 176/377 (46%), Gaps = 21/377 (5%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERK--GLLDMDKVYHARFFNVCKSQKAIK 78
           Y  D++      N L +  +I E  + L+ M+RK          Y++   ++CK++K + 
Sbjct: 405 YCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKK-VH 463

Query: 79  EAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +AF  F  + +     P + ++++L+       +   A ++ + + +     +   Y   
Sbjct: 464 QAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAF 523

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           +    + G++     V+ EMV AG  P+V TY  LI G + A +  +A   +  M S+  
Sbjct: 524 LNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGC 583

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           +P+ V +N L+    +    D A ++  +M       DPD +T   L+    N G++++A
Sbjct: 584 RPNAVTYNCLLHGLCKESKPDEAHELFRKMVE--RGCDPDRVTYTTLLYGFCNVGKIEQA 641

Query: 254 REVY-KMIHKYNIKGTPEVYTIAINCC----SQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            EV+ +M+ K +    P+V  +A NC      + G    A  ++  M  +   PD V  +
Sbjct: 642 VEVFDEMVSKGH---DPDV--VAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHN 696

Query: 309 ALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
            +ID    A +++ A E+ +   ++ G S  +++Y+SL+      +   +A+++++ +  
Sbjct: 697 IMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 756

Query: 368 IKLKPTVSTMNALITAL 384
           +KL P     N L+ A+
Sbjct: 757 LKLSPDPHAFNVLLEAI 773



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 13/255 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLV 87
           N L+R+GRI++   + E+M   G    ++    + H   F++ +      E F       
Sbjct: 525 NGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHG--FSLARKHDQAHELFETMISRG 582

Query: 88  PNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             P   T+N +L  +C  SK  E A ++ R + E G   D   YTTL+      GK++  
Sbjct: 583 CRPNAVTYNCLLHGLCKESKPDE-AHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQA 641

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            EVF EMV+ G +P+V  Y  L+ G  +AG+  +A   + +M S+  KPD V  N +I  
Sbjct: 642 VEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDG 701

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             ++  +D A +V   M  + H   PD +T  +L+       ++  A +V+K I +  + 
Sbjct: 702 LSKAKRLDDAVEVFERMEQD-HGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLS 760

Query: 267 GTPEVYTI---AINC 278
             P  + +   AI C
Sbjct: 761 PDPHAFNVLLEAIKC 775



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/472 (20%), Positives = 175/472 (37%), Gaps = 83/472 (17%)

Query: 79  EAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA  FF+ +          T+N L+      +D + A QV   +   G+  +   Y  L+
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID---GCAKAGQVAKAFGA------- 184
            +       D     F EMV+ G +P+   Y  + +      K G+ ++ FG        
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVA 231

Query: 185 -------------------------YGIMRSKNVKPDRVVFN------------------ 201
                                    +  M     KPD  +++                  
Sbjct: 232 VEMMLKKALLVNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKL 291

Query: 202 ------------------ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243
                             A ++   +SG +++AF+    M   +    P       L++ 
Sbjct: 292 FLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQP---VYDMLIRL 348

Query: 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
              +G++D+A E    I   NI+ +       I    + G  + A S+ + M K+G  PD
Sbjct: 349 LIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPD 408

Query: 304 EVFLSALIDFAGHAGKVEAAFEILQ--EAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
               S LI+    A K++ A E LQ  + K    S    SY+SL+ +   AK   +A  +
Sbjct: 409 MATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAI 468

Query: 362 YEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           +  M S +   P V + + LI   C  D+L +  ++   M  L   PN  TY+  L    
Sbjct: 469 FSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLM 528

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLS 470
           RK  +     +  +    G  P+++ +  +I   S  R++++A  L E ++S
Sbjct: 529 RKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMIS 580



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 133/325 (40%), Gaps = 10/325 (3%)

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
           +D   A    R +Q    K D   Y  L+    +   +    +VF +MV  G+ PN  TY
Sbjct: 108 RDGGEALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTY 167

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL---ITACGQSGAVDRAFDVLAE 222
             L+          +A   +G M  K  KP   ++  +   + A G+ G   R F    E
Sbjct: 168 AVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLE 227

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
               V  +    + +  +++      +   A ++++ + K   K    +Y+  +    + 
Sbjct: 228 KRVAVEMMLKKALLVNFVIQ-----DKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCKL 282

Query: 283 GDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
            + + A  ++ +M  +   P + V  +A +     +GK+E AFE  +  + + +S     
Sbjct: 283 ENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQ-ESLSSSQPV 341

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           Y  L+     +    KA E    +    ++P+  T +++I  LC   ++   + +L  M 
Sbjct: 342 YDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMI 401

Query: 402 SLGLCPNTITYSILLVACERKDDVE 426
             G CP+  T+S+L+    + D ++
Sbjct: 402 KRGYCPDMATHSMLINELCKADKIQ 426


>gi|302819136|ref|XP_002991239.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
 gi|300140950|gb|EFJ07667.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
          Length = 561

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 173/377 (45%), Gaps = 14/377 (3%)

Query: 95  FNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           F +L++ C   +   +EG FQ +    E G+ A+ ++YT  I    +    D    VF  
Sbjct: 158 FLVLLAYCKDGQVDKTEGIFQRM---AELGVVANIEMYTLQIEGYGRRRSFDKAEAVFQR 214

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQ---VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           ++  G  P   TY  ++   ++AG+   V + F       S  VKPD  ++N +I   G+
Sbjct: 215 LLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGK 274

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V++A  V   M  E   V    +T  +L+ AC    +   A +V++ +    +    
Sbjct: 275 QGKVEQAMSVYQSMKRER--VALTIVTFNSLL-ACQKTWK--DAEDVFRKLQAAKLDPDV 329

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  +N  ++    E A + +DDM   G+ P +V  +ALI+        E A  +L++
Sbjct: 330 FSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQ 389

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G +  + SY+SL+ A  +     KA +    MK   L+P + T   L+T   +G++
Sbjct: 390 MKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCVLMTGYANGNK 449

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L   M     MK  GL PN   Y++L+ A    DD +  ++   Q    G  P+ ++ + 
Sbjct: 450 LDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDDFDSAIIWYKQMLGTGYKPDPIL-RT 508

Query: 450 IIGMCSRRYEKARTLNE 466
           ++   ++ +E+   ++E
Sbjct: 509 VLLKIAKSHEQTEEIHE 525



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 10/254 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+ TFN L++   + KD+E  F   R +Q A L  D   YT L+   AK+ + +     F
Sbjct: 296 TIVTFNSLLACQKTWKDAEDVF---RKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAF 352

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M+ AGI P    Y ALI+  AK      A      M+     P    + +LI+A    
Sbjct: 353 DDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSV 412

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             + +A   +  M      + P+  T   LM   AN  ++D     ++ +    ++    
Sbjct: 413 NLMAKAEQTVLRMKEA--DLQPNLQTFCVLMTGYANGNKLDNMMRSFETMKLAGLEPNRH 470

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           VYT+ +N      D++ A   Y  M   G  PD +  + L+  A    + E   E+L   
Sbjct: 471 VYTVLVNAYGSNDDFDSAIIWYKQMLGTGYKPDPILRTVLLKIAKSHEQTEEIHELLGMQ 530

Query: 331 K-----NQGISVGI 339
           K      +G+  G+
Sbjct: 531 KPARSLEEGLDTGL 544



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 2/170 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT   +N L++  A  KD EGA  VL+ +++ G     + YT+LI+       +    + 
Sbjct: 362 PTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQT 421

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
              M  A ++PN+ T+  L+ G A   ++     ++  M+   ++P+R V+  L+ A G 
Sbjct: 422 VLRMKEADLQPNLQTFCVLMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGS 481

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +   D A     +M    +   PD I    L+K   +  Q +   E+  M
Sbjct: 482 NDDFDSAIIWYKQMLGTGY--KPDPILRTVLLKIAKSHEQTEEIHELLGM 529


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 177/385 (45%), Gaps = 21/385 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRF 83
           +Y  L+R     G++     ++ +M+R G+     VY+A    + K   S+KA++   R 
Sbjct: 209 TYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRM 268

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K        T+ ++++V   +     + +V R ++  G K +   YT L+   A+ G  
Sbjct: 269 KKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLC 328

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +   EVF EM  AG EP+V+ Y AL++  ++AG    A   + +M     +PDR  +N L
Sbjct: 329 EKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNIL 388

Query: 204 ITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           + A G++G    A     E+  + + P    H+    L+ A A +G V R  EV   +HK
Sbjct: 389 VDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHML---LLSAHARSGNVARCEEVMAQLHK 445

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KGVI---PDEVFLSALIDFAGHAG 318
             ++         +N   + G  +    ++  M +  G I   PD    + +++  G AG
Sbjct: 446 SGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAG 505

Query: 319 ---KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
              ++EAAF  L     +G++  +++++S +GA +  K + + L ++E M      P   
Sbjct: 506 YLDRMEAAFRSL---AARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAG 562

Query: 376 TMNALITALCDGDQLPKTMEVLSDM 400
           T   L+ A  D  Q+ +   ++  M
Sbjct: 563 TAKVLLAACSDERQVEQVKAIVRSM 587



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 6/370 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT  T+ +L+     S     A  V+  +Q  G+     +Y   +    K+   +   EV
Sbjct: 205 PTEDTYALLLRAYCGSGQLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEV 264

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           +  M       N  TY  +I+   KA Q   +   +  M+S   KP+   + AL+ A  +
Sbjct: 265 YQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAR 324

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  ++A +V  EM    H  +PD     ALM+A + AG    A E++ ++     +   
Sbjct: 325 EGLCEKAEEVFEEMQQAGH--EPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDR 382

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I ++   + G  + A + + ++ ++G+ P       L+     +G V    E++ +
Sbjct: 383 ASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQ 442

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALITALC 385
               G+     + ++++ A   A        L+  M+    +I   P  ST N ++ A  
Sbjct: 443 LHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYG 502

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
               L +       + + GL  + +T++  + A  RK +    L +  +  + G  P+  
Sbjct: 503 RAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAG 562

Query: 446 MFKCIIGMCS 455
             K ++  CS
Sbjct: 563 TAKVLLAACS 572



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 164/391 (41%), Gaps = 26/391 (6%)

Query: 89  NPTLSTFNMLMSVCASSK---DSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSG 141
            P +  +N+L+      +   ++E A+  L       L+A C      Y  L+     SG
Sbjct: 169 RPDIICYNLLIDAYGQKRQLSEAEAAYMAL-------LEARCVPTEDTYALLLRAYCGSG 221

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++     V  EM   GI P    Y A +DG  KA    KA   Y  M+ +  + +   + 
Sbjct: 222 QLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYT 281

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I   G++     +  V  EM +      P+  T  AL+ A A  G  ++A EV++ + 
Sbjct: 282 LMINVYGKANQPMSSLRVFREMKSV--GCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 339

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +   +     Y   +   S+ G  + A  ++  M   G  PD    + L+D  G AG  +
Sbjct: 340 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQ 399

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A    QE K QG+   + S+  L+ A + + N  +  E+   +    L+P    +NA++
Sbjct: 400 EAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAML 459

Query: 382 TALCDGDQLPKTMEVLSDMK----SLGLCPNTITYSILLVACERK---DDVEVGLMLLSQ 434
            A     +L     + + M+    ++   P+T TY++++ A  R    D +E     L+ 
Sbjct: 460 NAYGRAGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSLAA 519

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
               G+  ++V +   IG  +R+ E  + L 
Sbjct: 520 ---RGLAADVVTWTSRIGAYARKKEYGQCLR 547



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 133/304 (43%), Gaps = 2/304 (0%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           +  +   P++  Y  LID   +  Q+++A  AY  +      P    +  L+ A   SG 
Sbjct: 163 LRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQ 222

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           + RA  V++EM  + + + P      A +     A   ++A EVY+ + K   +   E Y
Sbjct: 223 LHRAEGVISEM--QRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETY 280

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T+ IN   +      +  V+ +M   G  P+    +AL++     G  E A E+ +E + 
Sbjct: 281 TLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQ 340

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G    + +Y++LM A S A   Q A E++  M+ +  +P  ++ N L+ A        +
Sbjct: 341 AGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQE 400

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
                 ++K  G+ P   ++ +LL A  R  +V     +++Q  + G+ P+      ++ 
Sbjct: 401 AEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLN 460

Query: 453 MCSR 456
              R
Sbjct: 461 AYGR 464



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 167/402 (41%), Gaps = 22/402 (5%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           +++ +  + D   Y  LI    +  ++      +  ++ A   P   TY  L+     +G
Sbjct: 162 VLRRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSG 221

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
           Q+ +A G    M+   + P   V+NA +    ++   ++A +V   M  E    + +  T
Sbjct: 222 QLHRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYT 281

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
           +  ++     A Q   +  V++ +     K     YT  +N  ++ G  E A  V+++M 
Sbjct: 282 L--MINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQ 339

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           + G  PD    +AL++    AG  + A EI    ++ G      SY+ L+ A   A   Q
Sbjct: 340 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQ 399

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           +A   ++ +K   ++PT+ +   L++A      + +  EV++ +   GL P+T   + +L
Sbjct: 400 EAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAML 459

Query: 417 VACERK---DDVEVGLMLLSQAKEDGVI---PNLVMFKCIIGMCSR-----------RYE 459
            A  R    DD+E   +  +  + DG I   P+   +  ++    R           R  
Sbjct: 460 NAYGRAGRLDDME--RLFAAMERGDGAIAGAPDTSTYNVMVNAYGRAGYLDRMEAAFRSL 517

Query: 460 KARTLNEHVLSFNSG-RPQIENKWTSLALMVYREAIVAGTIP 500
            AR L   V+++ S        K     L V+ E + AG  P
Sbjct: 518 AARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYP 559



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 16/183 (8%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PT+ +  +L+S  A S +     +V+  + ++GL+ D      ++    ++G++D M  
Sbjct: 414 RPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMER 473

Query: 149 VFHEMVN-----AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +F  M       AG  P+  TY  +++   +AG + +   A+  + ++ +  D V + + 
Sbjct: 474 LFAAMERGDGAIAGA-PDTSTYNVMVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSR 532

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRAREVYKM 259
           I A  +     +   V  EM      VD    PD  T   L+ AC++  QV++ + + + 
Sbjct: 533 IGAYARKKEYGQCLRVFEEM------VDAGCYPDAGTAKVLLAACSDERQVEQVKAIVRS 586

Query: 260 IHK 262
           +HK
Sbjct: 587 MHK 589


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 195/442 (44%), Gaps = 25/442 (5%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +L+ D       +  A     C+S  A+  A  F +
Sbjct: 38  VREGTLRPEEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVAL-FNR 96

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ +  +   L+   
Sbjct: 97  AASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGF 156

Query: 138 AKSGKVDAMFEV-FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--K 194
            ++ + D   ++  H     G  P+V +Y  L+      G+  +A     +M        
Sbjct: 157 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS 216

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V ++ +I    + G V++A D+  EM     P  PD +T  +++ A   A  +D+A 
Sbjct: 217 PDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIP--PDFVTYSSVVHALCKARAMDKAE 274

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
              + +    +      Y   I   S TG W+ A  V+ +M +  ++PD V LS L+   
Sbjct: 275 AFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSL 334

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              GK++ A ++      +G +  + SY+ ++   +         +L++ M    + P +
Sbjct: 335 CKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDI 394

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  +   +Q
Sbjct: 395 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQ 454

Query: 435 AKEDGVIPNLVMFKCII-GMCS 455
             + GV P+   + C+I G C+
Sbjct: 455 MIDQGVAPDKYAYHCLIQGFCT 476



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 198/433 (45%), Gaps = 9/433 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + +   +    N   ++  + +    F L+      P
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQ-NPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            + TFN+L+   A+    + A  +   +++ G+K D   Y T+I    + GK+D   E F
Sbjct: 393 DIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 452

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           ++M++ G+ P+ + Y  LI G    G + KA      + +  +  D V F+++I    + 
Sbjct: 453 NQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 512

Query: 211 GAVDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           G V  A ++    +N  +HP     +    LM      G++++A  V+  +    I+   
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPT---AVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPND 569

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY   +N   + G  +   S++ +M +KG+ P  +  + +ID    AG+   A     E
Sbjct: 570 VVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 629

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI++   +Y+ ++      + + +A+ L++ ++++ +K  + T+N +I  +    +
Sbjct: 630 MTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRR 689

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++ + +   GL P  +TYSI++    ++  VE    + S  +  G  P+  +   
Sbjct: 690 VEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 749

Query: 450 IIGMCSRRYEKAR 462
           ++    ++ E  R
Sbjct: 750 VVRELLKKNEIVR 762



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 176/417 (42%), Gaps = 40/417 (9%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           V +P +  ++ ++       D   A  + + + + G+  D   Y++++    K+  +D  
Sbjct: 214 VCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKA 273

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
                +MVN G+ PN  TY  LI G +  GQ  +A   +  MR  ++ PD V  + L+ +
Sbjct: 274 EAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGS 333

Query: 207 CGQSGAVDRAFDVLAEM-----NAEVHP----------------------------VDPD 233
             + G +  A DV   M     N  V                              + PD
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPD 393

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             T   L+KA AN G +D+A  ++  +  + +K     Y   I    + G  + A   ++
Sbjct: 394 IYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFN 453

Query: 294 DMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
            M  +GV PD+     LI  F  H G +  A E++ E  N G+ + I+ +SS++      
Sbjct: 454 QMIDQGVAPDKYAYHCLIQGFCTH-GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 512

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
                A  +++   ++ L PT    + L+   C   ++ K + V   M S G+ PN + Y
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVY 572

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHV 468
             L+    +   ++ GL L  +  + G+ P+ +++  II G+    +E  RT+   V
Sbjct: 573 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGL----FEAGRTVPAKV 625



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 165/341 (48%), Gaps = 11/341 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + P  HTY  L+D C +A +   A   +G +    ++ + ++ N L+    ++   D A 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIA 275
           D+L     E+  V PD  +   L+K+  + G+  +A ++ +M+ +     +P+V  Y+  
Sbjct: 167 DILLHRTPELGCV-PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTV 225

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+   + GD   AC ++ +M ++G+ PD V  S+++     A  ++ A   L++  N+G+
Sbjct: 226 IDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
                +Y++L+   S+   W++A+ +++ M+   + P V T++ L+ +LC   ++ +  +
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 345

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           V   M   G  PN  +Y+I+L     K  +     L      DG+ P++  F  +I    
Sbjct: 346 VFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLI---- 401

Query: 456 RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 496
           + Y     L++ ++ FN    ++ +      ++ YR  I A
Sbjct: 402 KAYANCGMLDKAMIIFN----EMRDHGVKPDVVTYRTVIAA 438



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 39/213 (18%), Positives = 98/213 (46%), Gaps = 5/213 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL---STF 95
           GRI E + L  +M +KG+     +Y+     + ++ + +    +F ++  +       T+
Sbjct: 583 GRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTY 642

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N+++     ++  + A  + + ++   +K +     T+I    ++ +V+   ++F  +  
Sbjct: 643 NIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISR 702

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           +G+ P V TY  +I    K G V +A   +  M++   +PD  + N ++    +   + R
Sbjct: 703 SGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVR 762

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           A   L++++     +  +H+T   L+   ++ G
Sbjct: 763 AGAYLSKIDERNFSL--EHLTTMLLVDLFSSKG 793


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 172/388 (44%), Gaps = 42/388 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLK--ADCKLYTTLITTCAKSGKVDAM 146
           P + ++N L+    +   +E A ++L  +  + GL    D   Y T+I    + G+VD  
Sbjct: 264 PNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKA 323

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           + +F +M++ GI P+V TY  +IDG  KA  V +A   +  M  K VKP    +N LI  
Sbjct: 324 YNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHG 383

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
              +G       +L EM+   H ++PD      L+      G+   AR ++  + +  IK
Sbjct: 384 YLSTGKWKEVVRLLEEMS--THDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIK 441

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV------ 320
             P+               + A  ++D M ++G+ P+ V   ALID     G+V      
Sbjct: 442 --PDAMI------------DEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILK 487

Query: 321 -----------------EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363
                            E A E++ E  +QGI + ++ +++LM          +A  L E
Sbjct: 488 FNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIE 547

Query: 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423
            M  + ++P V + N L+   C   +  +  ++L  M S+GL PN  TY+ LL    +  
Sbjct: 548 LMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKAR 607

Query: 424 DVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            ++    LL +   +G  P++V +  I+
Sbjct: 608 RIDDAYSLLREMLMNGPTPDVVTYNTIL 635



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 109/479 (22%), Positives = 199/479 (41%), Gaps = 57/479 (11%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN +I    R+G++ +  +L   M  +G+      Y+     +CK+Q   +    F ++
Sbjct: 306 SYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQM 365

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-- 141
           +     P+  T+N L+    S+   +   ++L  +    L+ DC +Y  L+    K+G  
Sbjct: 366 LDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRC 425

Query: 142 ---------------KVDAMFE----VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
                          K DAM +    +F +M   G+ PNV  YGALID   K G+V  A 
Sbjct: 426 TEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAI 485

Query: 183 --------GAYGI---------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
                     YG+               M  + ++ D VVFN L+    + G V  A   
Sbjct: 486 LKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEA-QR 544

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L E+   V  V PD I+   L+      G+ D A ++  ++    +K     Y   ++  
Sbjct: 545 LIELMLRVG-VRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGY 603

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            +    + A S+  +M   G  PD V  + ++      G+   A E+     N      +
Sbjct: 604 CKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDM 663

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
            +Y+ ++          +A ++++ + S  L+  + T N +I AL  G +    M++ + 
Sbjct: 664 YTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFAT 723

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 458
           + + GL P+  TY ++     ++  +E   +L S  +E+G  PN  M   ++    RR+
Sbjct: 724 ISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALV----RRF 778



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/417 (20%), Positives = 176/417 (42%), Gaps = 51/417 (12%)

Query: 26  SEQLHSYNRLIRQG-----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +E  + ++ +IR+G      I E + + + M ++GL      Y A    +CK  +     
Sbjct: 426 TEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAI 485

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +F +++        N +  +C   K  +    V  ++ + G++ D  ++ TL+    + 
Sbjct: 486 LKFNQMI--------NEVYGLCTVEKWEKAEELVFEMLDQ-GIRLDVVVFNTLMCDLCRE 536

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G+V     +   M+  G+ P+V +Y  L+DG    G+  +A     +M S  +KP+   +
Sbjct: 537 GRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTY 596

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N L+    ++  +D A+ +L EM   ++   PD +T   ++      G+   A+E+Y  +
Sbjct: 597 NTLLHGYCKARRIDDAYSLLREM--LMNGPTPDVVTYNTILHGLFQTGRFSEAKELY--L 652

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
           +  N +   ++YT  I              + + + K                      V
Sbjct: 653 NMINSRTQWDMYTYNI--------------ILNGLCKNNC-------------------V 679

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + AF++ Q   ++G+ + II+++ ++GA       + A++L+  + +  L P V T   +
Sbjct: 680 DEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLI 739

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
              L     L +   + S M+  G  PN+   + L+     + D+      LS+  E
Sbjct: 740 AENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDE 796



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 103/491 (20%), Positives = 204/491 (41%), Gaps = 51/491 (10%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------VFHEMVNA 156
           + S  S  A ++  L+      A    +  L+T  +++    +  E      +F  MV  
Sbjct: 127 SGSLASHDALKLFDLLLPHARPASVTAFNHLLTAVSRASGRHSTLESQLGISLFDRMVRE 186

Query: 157 ---GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
               + P+  TY  LI    + G++   F  +G++     + + +VFN L+     +  +
Sbjct: 187 CSDKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRVNHIVFNQLLKGLCDAKRL 246

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE-VYKMIHKYNIKGTPEV- 271
           D A ++L     E     P+ ++   L+K   N  + + A E ++ M     +   P+V 
Sbjct: 247 DEATNILLWRMPEFG-CTPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVV 305

Query: 272 -YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   IN   + G  + A +++  M  +G+ PD V  + +ID    A  V+ A  + Q+ 
Sbjct: 306 SYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQM 365

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            ++G+     +Y+ L+    +   W++ + L E M +  L+P       L+  LC   + 
Sbjct: 366 LDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRC 425

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
            +   +   +   G+ P+ +              ++  + +  + ++ G+ PN+V +  +
Sbjct: 426 TEARNIFDSVIRKGIKPDAM--------------IDEAVCIFDKMRQQGLSPNVVNYGAL 471

Query: 451 I-GMCSRRYEKARTLNEHVLSFNS------GRPQIENKWTSLALMVYREAIVAGTIPTVE 503
           I  +C     K   +++ +L FN       G   +E KW     +V+ E +  G    V 
Sbjct: 472 IDALC-----KLGRVDDAILKFNQMINEVYGLCTVE-KWEKAEELVF-EMLDQGIRLDVV 524

Query: 504 VVSKVLGCLQLPYNADIRERLVE---NLGVSADALKRSNLCSLIDGF---GEYDPRAFSL 557
           V + ++  L         +RL+E    +GV  D +  +   +L+DG    G  D  A  L
Sbjct: 525 VFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYN---TLVDGHCLTGRTD-EAAKL 580

Query: 558 LEEAASFGIVP 568
           L+   S G+ P
Sbjct: 581 LDVMVSIGLKP 591



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 142/313 (45%), Gaps = 15/313 (4%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLM-SVCASSKDSEGAFQVLR 116
           V++    ++C+  + + EA R  +L+      P + ++N L+   C + +  E A ++L 
Sbjct: 525 VFNTLMCDLCREGR-VMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAA-KLLD 582

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           ++   GLK +   Y TL+    K+ ++D  + +  EM+  G  P+V TY  ++ G  + G
Sbjct: 583 VMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTG 642

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM---NAEVHPVDPD 233
           + ++A   Y  M +   + D   +N ++    ++  VD AF +   +     ++H +  +
Sbjct: 643 RFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFN 702

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
            I IGAL+K     G+ + A +++  I  Y +    E Y +      + G  E    ++ 
Sbjct: 703 -IMIGALLKG----GKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFS 757

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M + G  P+   L+AL+    H G +  A   L +   +  S+   + S L+   S  +
Sbjct: 758 AMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSRGE 817

Query: 354 NWQKALELYEHMK 366
             Q A  L E  +
Sbjct: 818 YQQLAKSLPEKYR 830


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 170/417 (40%), Gaps = 77/417 (18%)

Query: 8   MLQFPYPNGKHANYAH----DVSEQLHSYNRL----IRQGRISECIDLLEDMERKGLLDM 59
           M + P     +A Y H     V  +   +N L    IR G+++   ++ ++M R+G+   
Sbjct: 89  MNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGV--- 145

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
                                         PT+ TFN LMS    + D   A  +  L+ 
Sbjct: 146 -----------------------------QPTVVTFNTLMSGMCKASDLNNANALRGLMA 176

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           +AG+  D   Y   I    K+G++    E+F EM   G+ PN      LID   K G V 
Sbjct: 177 KAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVT 236

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
                   M ++ VK D V +NAL+    +   +  A D++ EM  +   + PD +T   
Sbjct: 237 AGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKD--GLKPDKVTYTT 294

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+  C   G++D A E+ + +    +      YT  I+  S+ G    A  +  +M + G
Sbjct: 295 LIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAG 354

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + PD    + +ID     G V+  F+ L+E +N+G + GI++Y                 
Sbjct: 355 LQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTY----------------- 397

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
                             N ++   C   Q+     +L+ M ++G+CPN ITY+ILL
Sbjct: 398 ------------------NVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILL 436



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 147/310 (47%), Gaps = 3/310 (0%)

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           +  +  +++AG+ P    +  L+    ++G++A A   +  M  + V+P  V FN L++ 
Sbjct: 99  YAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSG 158

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             ++  ++ A + L  + A+   + PD  T GA ++     G++  A E+++ + +  + 
Sbjct: 159 MCKASDLNNA-NALRGLMAKAG-IAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLN 216

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
               V T  I+   + GD      +  +M  +GV  D V  +AL++       ++AA +I
Sbjct: 217 PNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDI 276

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           ++E +  G+    ++Y++L+  C        A+E+ + M    +     T  ALI+ L  
Sbjct: 277 VEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 336

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
             +      +L +M   GL P+  TY++++ A  +  DV+ G   L + +  G  P +V 
Sbjct: 337 AGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVT 396

Query: 447 FKCII-GMCS 455
           +  ++ G CS
Sbjct: 397 YNVVMNGFCS 406



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 120/282 (42%), Gaps = 41/282 (14%)

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
            V +A+  Y  +    V P+   FN L+    +SG +  A +V  EM      V P  +T
Sbjct: 94  SVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLR--RGVQPTVVT 151

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDD 294
              LM     A  ++ A  +  ++ K  I   P+VYT    I    +TG  + A  ++++
Sbjct: 152 FNTLMSGMCKASDLNNANALRGLMAKAGI--APDVYTYGAFIQGLCKTGRIQDAMEMFEE 209

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M ++G+ P+ V L+ LID     G V A  E+  E   +G+   +++Y            
Sbjct: 210 MCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAY------------ 257

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
                                  NAL+   C    +    +++ +M+  GL P+ +TY+ 
Sbjct: 258 -----------------------NALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTT 294

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L+  C ++ +++  + +  +  ++GV  + V +  +I   S+
Sbjct: 295 LIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 336



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 82/179 (45%)

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           ++G    A +V+D+M ++GV P  V  + L+     A  +  A  +       GI+  + 
Sbjct: 126 RSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVY 185

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +Y + +         Q A+E++E M    L P    +  LI A C    +   +E+  +M
Sbjct: 186 TYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEM 245

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
            + G+  + + Y+ L+    R  D++    ++ + ++DG+ P+ V +  +I  C +  E
Sbjct: 246 ATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGE 304


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 181/383 (47%), Gaps = 7/383 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L++     +    AF+    ++  GLK +   Y+TLI    K G +    ++
Sbjct: 357 PDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKL 416

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M   G+ PN  TY +LID   KAG + +A+     M    VK + V + AL+    +
Sbjct: 417 FVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCK 476

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +  A +V   M  +   + P+     AL+     A +++ A ++ K + + NIK   
Sbjct: 477 AGRMIEAEEVFRSMLKD--GISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDL 534

Query: 270 EVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            +Y +I    CSQ    E    + ++M  +G+  + V  + +ID    AGK   A    Q
Sbjct: 535 ILYGSIIWGHCSQR-KLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQ 593

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E ++ G+   I++Y  L+     A   + A++ +  M S+ L+P V+   +LI  LC  +
Sbjct: 594 EMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNN 653

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            +    ++  +M+  G+ P+   ++ L+    +  +++  L+L+S+  E  +  +L ++ 
Sbjct: 654 CIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYT 713

Query: 449 CII---GMCSRRYEKARTLNEHV 468
            ++     C   ++  +  NE +
Sbjct: 714 SLVSGFSQCGELHQARKFFNEMI 736



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 155/320 (48%), Gaps = 4/320 (1%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+   +KSG    + + F++M+ AGI P+V TY  +ID   K G +  +   +  MR   
Sbjct: 260 LLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMG 319

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + PD V +N+LI   G+ G+++    +  EM  +V  V PD IT   L+       ++ R
Sbjct: 320 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK-DVGCV-PDIITYNGLINCYCKFEKMPR 377

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A E +  +    +K     Y+  I+   + G  + A  ++ DM + G++P+E   ++LID
Sbjct: 378 AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLID 437

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               AG +  A+++L +    G+ + I++Y++L+     A    +A E++  M    + P
Sbjct: 438 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 497

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLML 431
                 AL+      +++   M++L  M    + P+ I Y SI+   C ++   E  L +
Sbjct: 498 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKL-I 556

Query: 432 LSQAKEDGVIPNLVMFKCII 451
           L + K  G+  N V+   II
Sbjct: 557 LEEMKSRGISANPVISTTII 576



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/453 (23%), Positives = 208/453 (45%), Gaps = 17/453 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    + G + E   L  +M+  G +     Y+      CK +K +  A
Sbjct: 320 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK-MPRA 378

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F +F  + N    P + T++ L+         +GA ++   ++  GL  +   YT+LI  
Sbjct: 379 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDA 438

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K+G +   +++ ++M+ AG++ N+ TY AL+DG  KAG++ +A   +  M    + P+
Sbjct: 439 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 498

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           + V+ AL+    ++  ++ A  +L +M      + PD I  G+++    +  +++  + +
Sbjct: 499 QQVYTALVHGYIKAERMEDAMKILKQMTE--CNIKPDLILYGSIIWGHCSQRKLEETKLI 556

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            + +    I   P + T  I+   + G    A + + +M   GV    V    LID    
Sbjct: 557 LEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCK 616

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVS 375
           AG VE A +      + G+   +  Y+SL+ G C N    + A +L++ M+   + P ++
Sbjct: 617 AGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKN-NCIESAKKLFDEMQCRGMTPDIT 675

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
              ALI        L + + ++S M  L +  +   Y+ L+    +  ++       ++ 
Sbjct: 676 AFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEM 735

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
            E G++P  V+  C++    R Y K   L+E +
Sbjct: 736 IEKGILPEEVLCICLL----REYYKRGQLDEAI 764



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 3/257 (1%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           VF+ L +   + G ++ A +  + M        P   +   L+   + +G     R+ + 
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRN--FRTLPKARSCNFLLHRLSKSGNGQLVRKFFN 278

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +    I  +   Y + I+   + GD E +  ++  M + G+ PD V  ++LID  G  G
Sbjct: 279 DMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVG 338

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
            +E    +  E K+ G    II+Y+ L+      +   +A E +  MK+  LKP V T +
Sbjct: 339 SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYS 398

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI A C    +   +++  DM+  GL PN  TY+ L+ A  +  ++     LL+   + 
Sbjct: 399 TLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA 458

Query: 439 GVIPNLVMFKCII-GMC 454
           GV  N+V +  ++ G+C
Sbjct: 459 GVKLNIVTYTALLDGLC 475



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/423 (22%), Positives = 170/423 (40%), Gaps = 44/423 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIK--EAF 81
           +YN LI    +  ++    +   +M+  GL      Y       CK    Q AIK     
Sbjct: 361 TYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDM 420

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R   L+PN    T+  L+     + +   A+++L  + +AG+K +   YT L+    K+G
Sbjct: 421 RRTGLLPNEF--TYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAG 478

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++    EVF  M+  GI PN   Y AL+ G  KA ++  A      M   N+KPD +++ 
Sbjct: 479 RMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYG 538

Query: 202 ALITACGQSGAVDRAFDVLAEMNAE---VHPV---------------------------- 230
           ++I        ++    +L EM +     +PV                            
Sbjct: 539 SIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDV 598

Query: 231 --DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
             +   +T   L+     AG V+ A + +  +    ++    VYT  I+   +    E A
Sbjct: 599 GVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESA 658

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
             ++D+M  +G+ PD    +ALID     G ++ A  ++       I   +  Y+SL+  
Sbjct: 659 KKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSG 718

Query: 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
            S      +A + +  M    + P       L+       QL + +E+ ++M+ +GL   
Sbjct: 719 FSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITE 778

Query: 409 TIT 411
           + T
Sbjct: 779 SAT 781


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 171/355 (48%), Gaps = 7/355 (1%)

Query: 94   TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
            T++ ++       ++  A  +L  +++A + A+ KLY  ++T   K GK     ++ H M
Sbjct: 1699 TYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEALDLLHSM 1758

Query: 154  VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-- 211
                  P+++TY  LI+   K G++  A G   +M+++    D V +N LI    + G  
Sbjct: 1759 ATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGNG 1818

Query: 212  --AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
               V+RAF +  EM  + H   P  +T   ++ A       ++A++V  ++H+       
Sbjct: 1819 RFRVERAFRLFEEMVDKGH--TPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDL 1876

Query: 270  EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
              Y + IN  ++ G  + A  ++ +M  +G IPD V  ++++D    AGKVE A ++  E
Sbjct: 1877 VTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAE 1936

Query: 330  AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
             K +GI     +Y+S+  AC  A   Q A      M+   L   +S + ALI+ +C   +
Sbjct: 1937 MKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAISYV-ALISTICKLGK 1995

Query: 390  LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
                 ++L +M   G  PN +T++++  A  ++ + +   +++ + ++    P L
Sbjct: 1996 GKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQELRQQHSSPPL 2050



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 158/357 (44%), Gaps = 16/357 (4%)

Query: 31   SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            +Y+ ++R     G   + + LLE M++  +    K+Y+    ++CK  K  KEA      
Sbjct: 1699 TYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKE-KEALDLLHS 1757

Query: 87   VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141
            +      P + T+N+L++        E A  ++ ++Q      D   Y TLI    + G 
Sbjct: 1758 MATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGN 1817

Query: 142  ---KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
               +V+  F +F EMV+ G  P   TY  +ID   +     +A     +M       D V
Sbjct: 1818 GRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLV 1877

Query: 199  VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
             +N LI    ++G +D+A D+  EM        PD +T  +++     AG+V+ A +++ 
Sbjct: 1878 TYNMLINRFAKAGMMDKAMDLFVEM--PTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFA 1935

Query: 259  MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
             +    I      YT   + C + G  + A +   +M K+G++ D +   ALI      G
Sbjct: 1936 EMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLV-DAISYVALISTICKLG 1994

Query: 319  KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            K +  F++L+E   +G    +++++ +  A S   N   A  + + ++     P ++
Sbjct: 1995 KGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQELRQQHSSPPLN 2051



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 139/313 (44%), Gaps = 11/313 (3%)

Query: 151  HEMVNAGIEP-----NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            H+M+ A  +P     N  TY  ++ G  + G+  +A      M+   V  +  ++N ++T
Sbjct: 1681 HQMLIAESKPSSFQANAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILT 1740

Query: 206  ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
               + G    A D+L  M        PD  T   L+ A    G+++ A+ + +M+     
Sbjct: 1741 HLCKHGKEKEALDLLHSMATT--SCAPDIYTYNILINALCKVGRLEDAQGLVEMMQAREC 1798

Query: 266  KGTPEVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
                  Y   I+   + G+  F    A  ++++M  KG  P  V  + +ID        E
Sbjct: 1799 PTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDE 1858

Query: 322  AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
             A ++L      G +  +++Y+ L+   + A    KA++L+  M +    P V T N+++
Sbjct: 1859 QAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIV 1918

Query: 382  TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
               C   ++ +  ++ ++MK+ G+ PN  TY+ +  AC +   ++     L + +++G++
Sbjct: 1919 DGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLV 1978

Query: 442  PNLVMFKCIIGMC 454
              +     I  +C
Sbjct: 1979 DAISYVALISTIC 1991



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 11/220 (5%)

Query: 18   HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
            H+      +  +++YN LI    + GR+ +   L+E M+ +        Y+     +C+ 
Sbjct: 1756 HSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRK 1815

Query: 74   QKA---IKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
                  ++ AFR F+ + +    PT  T+ +++      K  E A +VL L+ E G   D
Sbjct: 1816 GNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFD 1875

Query: 127  CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
               Y  LI   AK+G +D   ++F EM   G  P+V TY +++DG  KAG+V +A   + 
Sbjct: 1876 LVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFA 1935

Query: 187  IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
             M+++ + P+   + ++  AC ++G +  A   L EM  E
Sbjct: 1936 EMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKE 1975


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 186/408 (45%), Gaps = 42/408 (10%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            Y +    +CK Q   K       +V N   P   T+N ++    SS+  + A   L+ +
Sbjct: 233 TYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKM 292

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
           +  G++ D   Y +L+    K+G+     ++F  M   G+EP++ TY  L+ G A  G +
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGAL 352

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
            +      +M    + PD  VFN LI A  +   VD A  V ++M    H ++P+ +T G
Sbjct: 353 VEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQ--HGLNPNVVTYG 410

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           A++     +G VD A     M++                              ++ M  +
Sbjct: 411 AVIGILCKSGSVDDA-----MLY------------------------------FEQMIDE 435

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G+ P+ +  ++LI       K + A E++ E  ++GI +  I ++S++ +        ++
Sbjct: 436 GLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIES 495

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            +L++ M  I +KP V T + LI   C   ++ +  ++LS M S+G+ P+ +TY+ L+  
Sbjct: 496 EKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLING 555

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 464
             R   ++  L L  +    GV PN++ +  I+ G+  +RR   A+ L
Sbjct: 556 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 199/476 (41%), Gaps = 60/476 (12%)

Query: 23  HDVSEQLHSYNRLIRQG--RISECID----LLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           H  +  +  YNR+ R G  +++  +     L+    R G LD+     A   NV      
Sbjct: 63  HSPAAAVSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLG---FAALGNV------ 113

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +K+ FR   +   P      +L  +CA  + S+    VLR + E     D    T L+  
Sbjct: 114 VKKGFRVEAITFTP------LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKG 167

Query: 137 CAKSGKVDAMFEVFHEMVN---AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
                +     E+ H M +    G  P+V +Y  +I+G  K G   KA+  Y  M  + +
Sbjct: 168 LCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRI 227

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEM------------NAEVH------------- 228
            PD V ++++I A  +  A+D+A +VL  M            N+ +H             
Sbjct: 228 SPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIG 287

Query: 229 --------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280
                    V+PD +T  +LM      G+   AR+++  + K  ++     Y   +   +
Sbjct: 288 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYA 347

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
             G      ++ D M + G+ PD    + LI       KV+ A  +  + +  G++  ++
Sbjct: 348 TKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVV 407

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +Y +++G    + +   A+  +E M    L P +    +LI +LC  D+  K  E++ +M
Sbjct: 408 TYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEM 467

Query: 401 KSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
              G+C NTI + SI+   C+    +E    L       GV PN++ +  +I G C
Sbjct: 468 LDRGICLNTIFFNSIIHSHCKEGRVIE-SEKLFDLMVRIGVKPNVITYSTLIDGYC 522



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 153/334 (45%), Gaps = 11/334 (3%)

Query: 150 FHEMVNAG---IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
           ++ M  AG   + P VHTYG LI  C +AG++   F A G +  K  + + + F  L+  
Sbjct: 72  YNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKG 131

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
                    A D++     E+  + PD  +   L+K   +  +   A E+  M+      
Sbjct: 132 LCADKRTSDAMDIVLRRMTELSCM-PDVFSCTILLKGLCDENRSQEALELLHMMADDRGG 190

Query: 267 GT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G+ P+V  YT  IN   + GD + A S Y +M  + + PD V  S++I        ++ A
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKA 250

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E+L      G+    ++Y+S++    +++  ++A+   + M+S  ++P V T N+L+  
Sbjct: 251 MEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDY 310

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   +  +  ++   M   GL P+  TY  LL     K  +     LL     +G+ P+
Sbjct: 311 LCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPD 370

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477
             +F  +I  C+  Y K   ++E +L F+  R  
Sbjct: 371 HHVFNILI--CA--YAKQEKVDEAMLVFSKMRQH 400



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/444 (21%), Positives = 193/444 (43%), Gaps = 19/444 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    + GR +E   + + M ++GL + D   +        ++ A+ E      L
Sbjct: 303 TYNSLMDYLCKNGRSTEARKIFDSMTKRGL-EPDIATYCTLLQGYATKGALVEMHALLDL 361

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P    FN+L+   A  +  + A  V   +++ GL  +   Y  +I    KSG 
Sbjct: 362 MVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGS 421

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           VD     F +M++ G+ PN+  Y +LI       +  KA      M  + +  + + FN+
Sbjct: 422 VDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNS 481

Query: 203 LITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           +I +  + G V   ++ FD++  +      V P+ IT   L+     AG++D A ++   
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMVRIG-----VKPNVITYSTLIDGYCLAGKMDEATKLLSS 536

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
           +    +K     Y   IN   +    + A +++ +M   GV P+ +  + ++    H  +
Sbjct: 537 MFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRR 596

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
             AA E+       G  + + +Y+ ++ G C N     +AL +++++    L+    T N
Sbjct: 597 TAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLT-DEALRMFQNLCLTDLQLETRTFN 655

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            +I AL    +  +  ++ + + + GL P+  TYS++      +  +E    L    +E+
Sbjct: 656 IMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEEN 715

Query: 439 GVIPNLVMFKCIIGMCSRRYEKAR 462
           G   N  M   I+    +R +  R
Sbjct: 716 GCTANSRMLNSIVRKLLQRGDITR 739



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 35/201 (17%), Positives = 87/201 (43%), Gaps = 7/201 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R  R+ + + L ++M   G+      Y+     +  +++       +  +
Sbjct: 548 TYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGI 607

Query: 87  VPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             + T   LST+N+++     +  ++ A ++ + +    L+ + + +  +I    K G+ 
Sbjct: 608 TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRN 667

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D   ++F  +   G+ P+V TY  + +   + G + +    +  M       +  + N++
Sbjct: 668 DEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSI 727

Query: 204 ITACGQSGAVDRAFDVLAEMN 224
           +    Q G + RA   L+ ++
Sbjct: 728 VRKLLQRGDITRAGTYLSMID 748


>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 917

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 118/514 (22%), Positives = 208/514 (40%), Gaps = 77/514 (14%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKAIKEAFRFF--KLVP 88
           +  LIR G       L  D+ RKG    +  ++      C K    I EA      K   
Sbjct: 260 FRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRC 319

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + ++N++++       S  A  +L L+ E G K     + T+I    K G V+   +
Sbjct: 320 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARK 379

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL----- 203
            F E+ + G+  N   Y  +I G  KA  +++A   +  MR+K++ PD + FN L     
Sbjct: 380 YFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHY 439

Query: 204 ----------------------------ITACG--QSGAVDRAFDVLAEMNAEVHPVDPD 233
                                       +T  G   +G  D A  +L  +  +  P  P 
Sbjct: 440 RYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIP--PS 497

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNI---------------------------- 265
            +   +++ A  NAG  +RA   Y ++ K+ +                            
Sbjct: 498 VVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALY 557

Query: 266 ----KGTPEV---YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
               KG P     +T+ ++   + G    A S++++M  +GV PD V  +A I+    +G
Sbjct: 558 DMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISG 617

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
            +  A+++  +   +G       Y+SL+G         +AL+L   M    L P + T+N
Sbjct: 618 LMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVN 677

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            +I  LC   ++   +E   DM  +GL P+ +TY+ L+    +  DV     L+ +  + 
Sbjct: 678 MIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDS 737

Query: 439 GVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLS 470
           G  P+L  +   I G C+ R+  +A  + E ++S
Sbjct: 738 GWEPDLTTYNIRIHGYCTVRKINRAVMILEELIS 771



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/490 (20%), Positives = 205/490 (41%), Gaps = 49/490 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAFRFFKLVPNPT 91
           ++G +       +++E  GL     VY+       K++       + E  R   +VP+  
Sbjct: 370 KEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGI 429

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             TFN L++        E   ++LR +  +GL  D  L    +     +G+ D   ++  
Sbjct: 430 --TFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLE 487

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            ++  GI P+V  + ++I     AG   +AF AYGIM    + P     ++L+ +  + G
Sbjct: 488 NLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKG 547

Query: 212 AVDRAFDVLAEMNAEVHPVD---------------------------------PDHITIG 238
           ++D A+  L +M  +  PV                                  PD +   
Sbjct: 548 SLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFA 607

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           A +     +G +  A +V+  + +        VY   I    + G    A  +  +M K+
Sbjct: 608 AFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKR 667

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G++PD   ++ +I      G+++ A E   +    G+S  I++Y++L+     A +   A
Sbjct: 668 GLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGA 727

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            +L   M     +P ++T N  I   C   ++ + + +L ++ S+G+ PNT+TY+ ++ A
Sbjct: 728 DDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINA 787

Query: 419 -CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII------GMCSRRYEKARTLNEHVLSF 471
            C     ++  ++L ++  +   +PN V    ++      GM  +     + L+E  L F
Sbjct: 788 VCNVI--LDHAMILTAKLLKMAFVPNTVTVNVLLSQFCKQGMPEKAIFWGQKLSEIHLDF 845

Query: 472 NSGRPQIENK 481
           +    ++ N+
Sbjct: 846 DETTHKLMNR 855



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 154/373 (41%), Gaps = 11/373 (2%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           + PNP  S  ++L  +   + D    +++   V   G   +   +  LI    + G    
Sbjct: 249 VTPNP--SAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRI 306

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              + H M     EP+V++Y  +I+     GQ + A     +M     KP    F  +I 
Sbjct: 307 GEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIID 366

Query: 206 ACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           A  + G V+ A   FD + +M      +  + I    ++     A  + +A  +++ +  
Sbjct: 367 AFCKEGNVELARKYFDEIEDMG-----LSQNTIVYNIMISGYVKARDISQANLLFEEMRT 421

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
            +I      +   +    + G  E    +  D++  G++ D       +     AG+ + 
Sbjct: 422 KDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDE 481

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A ++L+    +GI   +++++S++ A  NA   ++A   Y  M    L P+ ST ++L+ 
Sbjct: 482 AMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLI 541

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           +L     L +    L DM   G     + +++LL    R   V +   L ++ K  GV P
Sbjct: 542 SLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFP 601

Query: 443 NLVMFKCII-GMC 454
           + V F   I G+C
Sbjct: 602 DAVAFAAFINGLC 614



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L   G +++  D+  DM RKG +  + VY++     CK  K + EA +  + +     
Sbjct: 611 NGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGK-LNEALKLVREMNKRGL 669

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T NM++         + A +    +   GL  D   Y TLI    K+  V    +
Sbjct: 670 LPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADD 729

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M ++G EP++ TY   I G     ++ +A      + S  + P+ V +N +I A  
Sbjct: 730 LMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVC 789

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
               +D A  + A++        P+ +T+  L+      G  ++A
Sbjct: 790 NV-ILDHAMILTAKLLKMAFV--PNTVTVNVLLSQFCKQGMPEKA 831



 Score = 39.7 bits (91), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +LM A   ++   +ALE+   M+ + + P  S ++ L   L          ++  D+   
Sbjct: 223 TLMRAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRK 282

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 463
           G CPN  T+++L++   RK    +G  LL    +    P++  +  +I     + + +  
Sbjct: 283 GPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYA 342

Query: 464 LNEHVLSF---NSGRPQI 478
           L  H+L+    N  +P I
Sbjct: 343 L--HLLNLMIENGCKPSI 358


>gi|302819015|ref|XP_002991179.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
 gi|300141007|gb|EFJ07723.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
          Length = 561

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 173/377 (45%), Gaps = 14/377 (3%)

Query: 95  FNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           F +L++ C   +   +EG FQ +    E G+ A+ ++YT  I    +    D    VF  
Sbjct: 158 FLVLLAYCKDGQVDKTEGIFQRM---AELGVAANIEMYTLQIEGYGRRRSFDKAEAVFQR 214

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQ---VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           ++  G  P   TY  ++   ++AG+   V + F       S  VKPD  ++N +I   G+
Sbjct: 215 LLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGK 274

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V++A  V   M  E   V    +T  +L+ AC    +   A +V++ +    +    
Sbjct: 275 QGKVEQAMSVYQSMKRER--VALTIVTFNSLL-ACQKTWK--DAEDVFRKLQAAKLDPDV 329

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  +N  ++    E A + +DDM   G+ P +V  +ALI+        E A  +L++
Sbjct: 330 FSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQ 389

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G +  + SY+SL+ A  +     KA +    MK   L+P + T   L+T   +G++
Sbjct: 390 MKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCILMTGYANGNK 449

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L   M     MK  GL PN   Y++L+ A    DD +  ++   Q    G  P+ ++ + 
Sbjct: 450 LDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDDFDSAIIWYKQMLGTGCKPDPIL-RT 508

Query: 450 IIGMCSRRYEKARTLNE 466
           ++   ++ +E+   ++E
Sbjct: 509 VLLKIAKSHEQTEEIHE 525



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 126/331 (38%), Gaps = 73/331 (22%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCA 138
           R     P+PT  T+  +M   + +   +   ++ +LV ++    +K D ++Y  +I T  
Sbjct: 214 RLLTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYG 273

Query: 139 KSGKVDAMF--------------------------------EVFHEMVNAGIEPNVHTYG 166
           K GKV+                                   +VF ++  A ++P+V +Y 
Sbjct: 274 KQGKVEQAMSVYQSMKRERVALTIVTFNSLLACQKTWKDAEDVFRKLQAAKLDPDVFSYT 333

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA- 225
           AL++  AKA +   A  A+  M +  ++P +V +NALI A  +    + A  VL +M   
Sbjct: 334 ALVNAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQN 393

Query: 226 --------------------------------EVHPVDPDHITIGALMKACANAGQVDRA 253
                                           +   + P+  T   LM   AN  ++D  
Sbjct: 394 GCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCILMTGYANGNKLDNM 453

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
              ++ +    ++    VYT+ +N      D++ A   Y  M   G  PD +  + L+  
Sbjct: 454 MRSFETMKLAGLEPNRHVYTVLVNAYGSNDDFDSAIIWYKQMLGTGCKPDPILRTVLLKI 513

Query: 314 AGHAGKVEAAFEILQEAKN-----QGISVGI 339
           A    + E   E+L   K+     +G+  G+
Sbjct: 514 AKSHEQTEEIHELLGMQKSARSLEEGLDTGV 544


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 173/368 (47%), Gaps = 11/368 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPNPTLSTF 95
           G + +   +  +M + G      VY+A    + K   +QKA++   R  +    P+ +T+
Sbjct: 255 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 314

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            ML+++   +  S  A +V   ++    K +   +T L+   A+ G  +   E+F ++  
Sbjct: 315 TMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 374

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           AG+EP+V+ Y AL++  ++AG    A   + +M+    +PDR  +N ++ A G++G  + 
Sbjct: 375 AGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHED 434

Query: 216 A---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           A   F+V+  +   + P    H+    L+ A + AG+V +  E+   +HK  IK    V 
Sbjct: 435 AQAVFEVMKRLG--ITPTMKSHML---LLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVL 489

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              +N   + G +E    V   M K     D    + LI+  G AG      E+ +    
Sbjct: 490 NSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPA 549

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           + +   +++++S +GA S  K + + LE++E M      P   T   L++A  +GDQ+ +
Sbjct: 550 RNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQE 609

Query: 393 TMEVLSDM 400
              V+  M
Sbjct: 610 VTTVIRTM 617



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 153/340 (45%), Gaps = 8/340 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+   +N  +       D++ A ++   ++    +     YT LI    K+ K     +V
Sbjct: 274 PSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKV 333

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           FHEM +   +PN+ T+ AL++  A+ G   KA   +  ++   ++PD   +NAL+ A  +
Sbjct: 334 FHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSR 393

Query: 210 SG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           +G        F ++  M  E     PD  +   ++ A   AG  + A+ V++++ +  I 
Sbjct: 394 AGFPYGAAEIFSLMQHMGCE-----PDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGIT 448

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            T + + + ++  S+ G       + + M K G+ PD   L+++++  G  G+ E   E+
Sbjct: 449 PTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEV 508

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L   +       I +Y+ L+     A  + +  EL+  + +  L P V T  + I A   
Sbjct: 509 LTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSR 568

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
             Q  + +EV  +M   G  P+  T  +LL AC   D ++
Sbjct: 569 RKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQ 608



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 152/366 (41%), Gaps = 2/366 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT  T+ +L+    +S   E A  V   +++ G      +Y   I    K G      E+
Sbjct: 239 PTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEI 298

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M     +P+  TY  LI+   KA +   A   +  MRS+  KP+   F AL+ A  +
Sbjct: 299 FERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAR 358

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  ++A ++  ++      ++PD     ALM+A + AG    A E++ ++     +   
Sbjct: 359 EGLCEKAEEIFEQLQEA--GLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDR 416

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I ++   + G  E A +V++ M + G+ P       L+     AGKV    EI+ +
Sbjct: 417 ASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQ 476

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI       +S++        ++K  E+   M+       +ST N LI        
Sbjct: 477 MHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGF 536

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             +  E+   + +  L P+ +T++  + A  R+      L +  +  + G  P+    K 
Sbjct: 537 FARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKV 596

Query: 450 IIGMCS 455
           ++  CS
Sbjct: 597 LLSACS 602



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 4/310 (1%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           +  +   P+V  Y  LID   +     KA   Y  +      P    +  L+ A   SG 
Sbjct: 197 LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 256

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +++A  V AEM     P  P  +   A +      G   +A E+++ + +   + +   Y
Sbjct: 257 LEKAEAVFAEMRKYGFP--PSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 314

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T+ IN   +      A  V+ +M  +   P+    +AL++     G  E A EI ++ + 
Sbjct: 315 TMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 374

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+   + +Y++LM A S A     A E++  M+ +  +P  ++ N ++ A         
Sbjct: 375 AGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHED 434

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
              V   MK LG+ P   ++ +LL A  R   V     +++Q  + G+ P+  +   ++ 
Sbjct: 435 AQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLN 494

Query: 453 MCSR--RYEK 460
           +  R  ++EK
Sbjct: 495 LYGRLGQFEK 504



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 140/381 (36%), Gaps = 33/381 (8%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           ++  +    D   Y  LI    +          + E++ A   P   TY  L+     +G
Sbjct: 196 ILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSG 255

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE---------- 226
            + KA   +  MR     P  VV+NA I    + G   +A ++   M  +          
Sbjct: 256 LLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYT 315

Query: 227 -----------------------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
                                       P+  T  AL+ A A  G  ++A E+++ + + 
Sbjct: 316 MLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEA 375

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            ++     Y   +   S+ G    A  ++  M   G  PD    + ++D  G AG  E A
Sbjct: 376 GLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDA 435

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             + +  K  GI+  + S+  L+ A S A    K  E+   M    +KP    +N+++  
Sbjct: 436 QAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNL 495

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
                Q  K  EVL+ M+      +  TY+IL+    R         L        +IP+
Sbjct: 496 YGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPD 555

Query: 444 LVMFKCIIGMCSRRYEKARTL 464
           +V +   IG  SRR +  R L
Sbjct: 556 VVTWTSRIGAYSRRKQYNRCL 576



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 85/179 (47%), Gaps = 4/179 (2%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +L   PT+ +  +L+S  + +       +++  + ++G+K D  +  +++    + G+ +
Sbjct: 444 RLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFE 503

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
            M EV   M       ++ TY  LI+   +AG  A+    +  + ++N+ PD V + + I
Sbjct: 504 KMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRI 563

Query: 205 TACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
            A  +    +R  +V  EM +A  +P   D  T   L+ AC+N  Q+     V + +HK
Sbjct: 564 GAYSRRKQYNRCLEVFEEMIDAGCYP---DGGTAKVLLSACSNGDQIQEVTTVIRTMHK 619



 Score = 40.0 bits (92), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 81/208 (38%), Gaps = 13/208 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQKAIKEA 80
           SYN ++    R G   +   + E M+R G+    K +      ++R   V K ++ + + 
Sbjct: 418 SYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQ- 476

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               K    P     N ++++       E   +VL  +++    AD   Y  LI    ++
Sbjct: 477 --MHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRA 534

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G    M E+F  +    + P+V T+ + I   ++  Q  +    +  M      PD    
Sbjct: 535 GFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTA 594

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVH 228
             L++AC     +     V+  M+ ++ 
Sbjct: 595 KVLLSACSNGDQIQEVTTVIRTMHKDMR 622


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 187/418 (44%), Gaps = 16/418 (3%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF----- 83
           +H Y +L     + E  +++E M  KG+L     Y+     +C   K I EA R      
Sbjct: 288 VHGYCKL---KWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGK-IDEAVRLRDKME 343

Query: 84  -FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            FKLVP+  + T+N L+  C   + S+ AF+++  ++  G+K +   +  +I      GK
Sbjct: 344 SFKLVPD--VVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGK 401

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D    V  +MV +G  P+  TY  +I+G  KAG++A+A+     M  K +K D    N 
Sbjct: 402 IDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNT 461

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L+        +D A+ +   M A       D +T G L+       Q DRA ++++ + +
Sbjct: 462 LLHTMCLEKQLDDAYTL--TMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKE 519

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             I  T   Y   I     +G  + A    +++ +KG++PDE   + +I      G VE 
Sbjct: 520 TGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEK 579

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALI 381
           AF+   +     +   I + + L+         +K L L+    S K KP    T N +I
Sbjct: 580 AFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLFNTWIS-KGKPMDTVTYNIII 638

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           ++ C   +L    +++++M+   L P+  TY+ ++    +    E    L  +  E G
Sbjct: 639 SSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKG 696



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 190/433 (43%), Gaps = 49/433 (11%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           KL   P ++TFN+L+    S  ++E A +++  + E G   D   Y T++T   K  ++ 
Sbjct: 204 KLGVQPNVNTFNILIHGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLT 263

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAK------------------------------ 174
            + ++  +M N+G+ PN +TY  L+ G  K                              
Sbjct: 264 QVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMV 323

Query: 175 -----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
                 G++ +A      M S  + PD V +N LI  C +    D AF ++ EM A    
Sbjct: 324 RGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKAR--G 381

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEF 287
           V  + +T   ++K     G++D A  V  M+       +P+   Y   IN   + G    
Sbjct: 382 VKENGVTHNIMIKWFCTEGKIDEASNV--MVKMVESGFSPDCFTYNTMINGYCKAGKMAE 439

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  + D+M +KG+  D   L+ L+       +++ A+ +  +A+ +G  +  ++Y +L+ 
Sbjct: 440 AYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIM 499

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                +   +AL+L+E MK   +  T+ T N +I  LC   +  + ++ L+++   GL P
Sbjct: 500 GYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVP 559

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSR-RYEKART 463
           +  T +I++     +  VE      ++  E  + P++  F C I   G+C     EK  T
Sbjct: 560 DESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDI--FTCNILLRGLCREGMLEKGLT 617

Query: 464 LNEHVLSFNSGRP 476
           L    +S   G+P
Sbjct: 618 LFNTWIS--KGKP 628



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/335 (20%), Positives = 143/335 (42%), Gaps = 22/335 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    + G+++E   ++++M RKGL  +D        +    +K + +A+     
Sbjct: 423 TYNTMINGYCKAGKMAEAYKMMDEMGRKGL-KLDTFTLNTLLHTMCLEKQLDDAYTLTMK 481

Query: 87  VPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                      T+  L+      + ++ A ++   ++E G+ A    Y T+I     SGK
Sbjct: 482 ARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGK 541

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
            D   +  +E++  G+ P+  T   +I G    G V KAF  +  M   ++KPD    N 
Sbjct: 542 TDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNI 601

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           L+    + G +++   +     ++  P+D   +T   ++ +     +++ A ++   +  
Sbjct: 602 LLRGLCREGMLEKGLTLFNTWISKGKPMDT--VTYNIIISSFCKERRLEDAFDLMTEMEG 659

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-------VIPD----EVFLSALI 311
            N++     Y   +   ++ G  E A  +     +KG         P+    ++  S  I
Sbjct: 660 KNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMMYSEQI 719

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
                 GK + A ++ Q+A+ +G+S+   +Y  LM
Sbjct: 720 SSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLM 754



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 25/228 (10%)

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILL 416
           +++  MK ++ +P + T N L+ AL   +    L  + EV  D   LG+ PN  T++IL+
Sbjct: 159 QIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILI 218

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 476
                 ++ E  L L++Q  E G  P+ V +  ++    +R +  +  +  +   NSG  
Sbjct: 219 HGYCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLF 278

Query: 477 QIEN------------KWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADI 520
              N            KW   A  V       G +P V   + ++  L    ++     +
Sbjct: 279 PNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRL 338

Query: 521 RERLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLEEAASFGI 566
           R+++ E+  +  D +  +   +LIDG  E+     AF L+EE  + G+
Sbjct: 339 RDKM-ESFKLVPDVVTYN---TLIDGCFEHRGSDAAFKLVEEMKARGV 382


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/453 (23%), Positives = 209/453 (46%), Gaps = 17/453 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    + G + E   L  +M+  G +     Y+      CK +K +  A
Sbjct: 261 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK-MPRA 319

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F +F  + N    P + T++ L+         +GA ++L  ++  GL  +   YT+LI  
Sbjct: 320 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDA 379

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K+G +   +++ ++M+ AG++ N+ TY AL+DG  KAG++ +A   +  M    + P+
Sbjct: 380 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 439

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
           + V+ AL+    ++  ++ A  +L +M      + PD I  G+++    +  +++  + +
Sbjct: 440 QQVYTALVHGYIKAERMEDAMKILKQMTE--CNIKPDLILYGSIIWGHCSQRKLEETKLI 497

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
            + +    I   P + T  I+   + G    A + + +M   GV    V    LID    
Sbjct: 498 LEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCE 557

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVS 375
           AG VE A +      + G+   +  Y+SL+ G C N    + A +L++ M+   + P ++
Sbjct: 558 AGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXN-NCIESAKKLFDEMQCRGMTPDIT 616

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
              ALI        L + + ++S M  L +  +   Y+ L+    +  ++       ++ 
Sbjct: 617 AFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEM 676

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 468
            E G++P  V+  C++    R Y K   L+E +
Sbjct: 677 IEKGILPEEVLCICLL----REYYKRGQLDEAI 705



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 173/380 (45%), Gaps = 21/380 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADC-------KLYTTL-------- 133
           P  + F+ML S         G F VL  +  E GL  +        + + TL        
Sbjct: 141 PVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNF 200

Query: 134 -ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
            +   +KSG    + + F++M+ AGI P+V TY  +ID   K G +  +   +  MR   
Sbjct: 201 LLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMG 260

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           + PD V +N+LI   G+ G+++    +  EM  +V  V PD IT   L+       ++ R
Sbjct: 261 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK-DVGCV-PDIITYNGLINCYCKFEKMPR 318

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A E +  +    +K     Y+  I+   + G  + A  +  DM + G++P+E   ++LID
Sbjct: 319 AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLID 378

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               AG +  A+++L +    G+ + I++Y++L+     A    +A E++  M    + P
Sbjct: 379 ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISP 438

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLML 431
                 AL+      +++   M++L  M    + P+ I Y SI+   C ++   E  L +
Sbjct: 439 NQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKL-I 497

Query: 432 LSQAKEDGVIPNLVMFKCII 451
           L + K  G+  N V+   II
Sbjct: 498 LEEMKSRGISANPVISTTII 517



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 140/306 (45%), Gaps = 7/306 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + GR+ E  ++   M + G+    +VY A      K+++ +++A +  K +      P
Sbjct: 415 LCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAER-MEDAMKILKQMTECNIKP 473

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
            L  +  ++    S +  E    +L  ++  G+ A+  + TT+I    K+GK       F
Sbjct: 474 DLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFF 533

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM + G+E  + TY  LIDG  +AG V  A   +  M S  ++P+  V+ +LI     +
Sbjct: 534 QEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXN 593

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             ++ A  +  EM  +   + PD     AL+      G +  A  +   + +  I+    
Sbjct: 594 NCIESAKKLFDEM--QCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLH 651

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           VYT  ++  SQ G+   A   +++M +KG++P+EV    L+      G+++ A E+  E 
Sbjct: 652 VYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEM 711

Query: 331 KNQGIS 336
           +    S
Sbjct: 712 ERMAYS 717



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 3/257 (1%)

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           VF+ L +   + G ++ A +  + M        P   +   L+   + +G     R+ + 
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRMRN--FRTLPKARSCNFLLHRLSKSGNGQLVRKFFN 219

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +    I  +   Y + I+   + GD E +  ++  M + G+ PD V  ++LID  G  G
Sbjct: 220 DMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVG 279

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
            +E    +  E K+ G    II+Y+ L+      +   +A E +  MK+  LKP V T +
Sbjct: 280 SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYS 339

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI A C    +   +++L DM+  GL PN  TY+ L+ A  +  ++     LL+   + 
Sbjct: 340 TLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA 399

Query: 439 GVIPNLVMFKCII-GMC 454
           GV  N+V +  ++ G+C
Sbjct: 400 GVKLNIVTYTALLDGLC 416



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 168/383 (43%), Gaps = 13/383 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y+ LI    ++G +   I LL DM R GLL  +  Y +     CK+   + EA++    
Sbjct: 337 TYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGN-LTEAWKLLND 395

Query: 87  VPNP----TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +        + T+  L+  +C + +  E A +V R + + G+  + ++YT L+    K+ 
Sbjct: 396 MLQAGVKLNIVTYTALLDGLCKAGRMIE-AEEVFRSMLKDGISPNQQVYTALVHGYIKAE 454

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           +++   ++  +M    I+P++  YG++I G     ++ +       M+S+ +  + V+  
Sbjct: 455 RMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVIST 514

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            +I A  ++G    A +   EM      V+   +T   L+     AG V+ A + +  + 
Sbjct: 515 TIIDAYFKAGKSSDALNFFQEMQDV--GVEATIVTYCVLIDGLCEAGIVELAVDYFCRML 572

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
              ++    VYT  I+        E A  ++D+M  +G+ PD    +ALID     G ++
Sbjct: 573 SLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQ 632

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A  ++       I   +  Y+SL+   S      +A + +  M    + P       L+
Sbjct: 633 EALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLL 692

Query: 382 TALCDGDQLPKTMEVLSDMKSLG 404
                  QL + +E+ ++M+ + 
Sbjct: 693 REYYKRGQLDEAIELKNEMERMA 715


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 184/416 (44%), Gaps = 10/416 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L R   + +   LLE+M  +G    + V +    N    Q   KEAF    ++  N   P
Sbjct: 111 LCRDHEVDKGCKLLEEMAGRGCAP-NAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPP 169

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVL--RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            L TF +++       + E AF+V+    + E+GL  D   + +++    K  ++     
Sbjct: 170 ELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHN 229

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF   +  G  PNV TY  LIDG +K  ++ +A      M     + + V ++ ++    
Sbjct: 230 VFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLL 289

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G ++ A  VL +M        PD +T   L+       ++  A  + + + +     +
Sbjct: 290 KVGRMEDAVVVLRQMRDA--GCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPS 347

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT   +   ++G ++ A  + D M  +G  P+ +  S+++D    AG+V  A    +
Sbjct: 348 VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFE 407

Query: 329 E-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           + A+++ ++  +I+YS+L+     A    +A E  E M      P V T + LI  LCD 
Sbjct: 408 KMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDA 467

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
            ++   +E+   M   G  P+ +TY+ L+    R   V+    L  Q + DG+ P+
Sbjct: 468 GRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPD 523



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 164/392 (41%), Gaps = 12/392 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----- 87
           N L+ QGR  E   LLE M   G       +      +CK +  I+ AFR    +     
Sbjct: 144 NALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCK-EGEIEAAFRVVDEMFMIES 202

Query: 88  -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             +P + TFN ++      +    A  V +   E G + +   Y+TLI   +K  K+D  
Sbjct: 203 GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEA 262

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            ++  +MV  G   N  TY  ++DG  K G++  A      MR     PD V +N LI  
Sbjct: 263 LQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDG 322

Query: 207 CGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
             +   +  A  +L EM  A  HP     +T   L      +G+ D A E+   +     
Sbjct: 323 FFKRQRLREAVGLLREMLEAGFHP---SVVTYTTLCHGLCRSGRFDEAVEILDYMAARGC 379

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAF 324
                 Y+  ++   + G    A   ++ M +  V+ P  +  SALID    AGK++ A+
Sbjct: 380 APNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAY 439

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E L+     G    ++++S L+    +A      LEL+  M      P + T   L+  L
Sbjct: 440 EFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRL 499

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           C   ++ +  ++   M+S GL P+  T   ++
Sbjct: 500 CRASRVDEAFDLFQQMRSDGLSPDRSTRRTMI 531



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 186/427 (43%), Gaps = 8/427 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L +  ++ + I L + M  K +   D V +    +    Q+ +KEA+  F+       +P
Sbjct: 5   LCKSRKVDKAITLFKQMVDKAIYP-DVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHP 63

Query: 91  TLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           T+ T+N M+  +C   +          +    G +     Y+TLI    +  +VD   ++
Sbjct: 64  TVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKL 123

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G  PN  TY  L++     G+  +AF     M +    P+ + F  +I    +
Sbjct: 124 LEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCK 183

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G ++ AF V+ EM      + PD IT  +++       ++  A  V+K   +   +   
Sbjct: 184 EGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNV 243

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y+  I+  S+    + A  +   M + G   + V  S ++D     G++E A  +L++
Sbjct: 244 VTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQ 303

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            ++ G     ++Y++L+      +  ++A+ L   M      P+V T   L   LC   +
Sbjct: 304 MRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGR 363

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ-AKEDGVIPNLVMFK 448
             + +E+L  M + G  PN ITYS ++    +   V   L    + A+++ V P+++ + 
Sbjct: 364 FDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYS 423

Query: 449 CII-GMC 454
            +I G+C
Sbjct: 424 ALIDGLC 430



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 151/322 (46%), Gaps = 5/322 (1%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           +I    KS KVD    +F +MV+  I P+V TYGALIDG  K  +V +A+  +   R+K 
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVD 251
             P  V +N +I    + G ++ A  +  +M   +H    P  +T   L+       +VD
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDM--AIHFGFRPTVVTYSTLIDGLCRDHEVD 118

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +  ++ + +           Y   +N     G  + A S+ + M   G  P+ +    +I
Sbjct: 119 KGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLII 178

Query: 312 DFAGHAGKVEAAFEILQE--AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
                 G++EAAF ++ E      G+S  +I+++S++      +    A  +++      
Sbjct: 179 KGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 238

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
            +P V T + LI  L    ++ + +++L+ M  LG   NT+TYS ++    +   +E  +
Sbjct: 239 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAV 298

Query: 430 MLLSQAKEDGVIPNLVMFKCII 451
           ++L Q ++ G +P+ V +  +I
Sbjct: 299 VVLRQMRDAGCLPDAVTYNTLI 320



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 109/489 (22%), Positives = 195/489 (39%), Gaps = 52/489 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LI    +Q R+ E  DL E+   KG       Y+     +CK  + I+ A   +  
Sbjct: 32  TYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGR-IENALTLYDD 90

Query: 87  VP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +       PT+ T++ L+       + +   ++L  +   G   +   Y TL+      G
Sbjct: 91  MAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQG 150

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG--IMRSKNVKPDRVV 199
           +    F +  +M   G  P + T+G +I G  K G++  AF       M    + PD + 
Sbjct: 151 RSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVIT 210

Query: 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259
           FN+++    +   +  A +V     A      P+ +T   L+   +   ++D A ++   
Sbjct: 211 FNSVLDGLCKEQRILDAHNVFK--RALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAK 268

Query: 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF------ 313
           + +   +     Y+  ++   + G  E A  V   M   G +PD V  + LID       
Sbjct: 269 MVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQR 328

Query: 314 -------------AG----------------HAGKVEAAFEILQEAKNQGISVGIISYSS 344
                        AG                 +G+ + A EIL     +G +   I+YSS
Sbjct: 329 LREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSS 388

Query: 345 LMGACSNAKNWQKALELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           ++     A    +AL  +E M +   + P V   +ALI  LC   ++ +  E L  M   
Sbjct: 389 IVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRA 448

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 461
           G  P+ +T+SIL+        ++ GL L     E G +P++V +  ++    R  R ++A
Sbjct: 449 GRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEA 508

Query: 462 RTLNEHVLS 470
             L + + S
Sbjct: 509 FDLFQQMRS 517



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 148/322 (45%), Gaps = 10/322 (3%)

Query: 69  NVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            +CK Q+ I +A   FK        P + T++ L+   +     + A Q+L  + E G +
Sbjct: 217 GLCKEQR-ILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCR 275

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
           A+   Y+T++    K G+++    V  +M +AG  P+  TY  LIDG  K  ++ +A G 
Sbjct: 276 ANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGL 335

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
              M      P  V +  L     +SG  D A ++L  M A      P+ IT  +++   
Sbjct: 336 LREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAA--RGCAPNAITYSSIVDGL 393

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
             AG+V  A   ++ + +  +   P V  Y+  I+   + G  + A    + M + G IP
Sbjct: 394 CKAGRVTEALGYFEKMARDEVVA-PHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIP 452

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D V  S LI+    AG+++   E+ +    +G    +++Y++L+     A    +A +L+
Sbjct: 453 DVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLF 512

Query: 363 EHMKSIKLKPTVSTMNALITAL 384
           + M+S  L P  ST   +I  L
Sbjct: 513 QQMRSDGLSPDRSTRRTMIHGL 534



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 12/215 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    ++ R+ E + LL +M   G       Y      +C+S +   EA      
Sbjct: 315 TYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGR-FDEAVEILDY 373

Query: 87  VPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      P   T++ ++  +C + + +E      ++ ++  +      Y+ LI    K+G
Sbjct: 374 MAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAG 433

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+D  +E    M+ AG  P+V T+  LI+G   AG++      +  M  +   PD V + 
Sbjct: 434 KIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYA 493

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
            L+    ++  VD AFD+  +M ++   + PD  T
Sbjct: 494 TLVDRLCRASRVDEAFDLFQQMRSD--GLSPDRST 526


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 176/396 (44%), Gaps = 15/396 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S    +YN L+    R+   SE  ++  +M R+G++  D V  +    V    + + +A
Sbjct: 219 LSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVP-DLVSFSSLIAVFSRNRHLDQA 277

Query: 81  FRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
             +F+      LVP+  + T  ++   C +    E A ++   + E G   D   Y T++
Sbjct: 278 LVYFRDMKKFGLVPDNVIYTV-LMHGYCRNGNMLE-ALKIRDEMLEQGCVLDVIAYNTIL 335

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
               K   +    ++F EMV  G  P+ +T+  LI G  + G + KA   +G M  +N+K
Sbjct: 336 NGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIK 395

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V +N LI    + G +++A ++   M +    + P+HIT G L+ A  + G V  A 
Sbjct: 396 PDIVAYNTLIDGFCKVGEMEKASELWDGMIS--RKIFPNHITYGILINAYCSVGHVSEAF 453

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            ++ ++ +  IK T       I    ++GD   A      M  KGV PD +  + LI+  
Sbjct: 454 RLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGF 513

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
                ++ AF  + + + +G+   II+Y+ +M         Q+A  +   M    + P  
Sbjct: 514 VREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDR 573

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
           ST  ALI      D L +      +M   G  P+ +
Sbjct: 574 STYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDV 609



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 167/363 (46%), Gaps = 5/363 (1%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T N++++        +     L  ++  G+ AD   Y TLI    + G ++  FE+ + M
Sbjct: 120 TLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSM 179

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
            + G++P++ TY A+I+G  K G+ A+A G    M +  + PD   +N L+    +    
Sbjct: 180 ADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNF 239

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++  EM  +   V PD ++  +L+   +    +D+A   ++ + K+ +     +YT
Sbjct: 240 SEAKEIFGEMLRQ--GVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYT 297

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           + ++   + G+   A  + D+M ++G + D +  + +++       +  A ++  E   +
Sbjct: 298 VLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVER 357

Query: 334 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           G      ++++L+ G C +  N  KAL L+  M    +KP +   N LI   C   ++ K
Sbjct: 358 GALPDFYTFTTLIHGHCQDG-NMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEK 416

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
             E+   M S  + PN ITY IL+ A      V     L     E G+ P LV    +I 
Sbjct: 417 ASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIK 476

Query: 452 GMC 454
           G C
Sbjct: 477 GYC 479



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 200/432 (46%), Gaps = 14/432 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G+  +    L +ME  G+      Y+      C+ +  ++EAF     + +   
Sbjct: 126 NALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCR-EGLLEEAFEIMNSMADKGL 184

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P+L T+N +++          A  +L  +   GL  D   Y TL+    +        E
Sbjct: 185 KPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKE 244

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EM+  G+ P++ ++ +LI   ++   + +A   +  M+   + PD V++  L+    
Sbjct: 245 IFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYC 304

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKG 267
           ++G +  A  +  EM  +   +D   I    ++        +  A +++ +M+ +     
Sbjct: 305 RNGNMLEALKIRDEMLEQGCVLDV--IAYNTILNGLCKEKMLTDADKLFDEMVER---GA 359

Query: 268 TPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
            P+ YT    I+   Q G+   A S++  MT++ + PD V  + LID     G++E A E
Sbjct: 360 LPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASE 419

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +     ++ I    I+Y  L+ A  +  +  +A  L++ M    +KPT+ T N +I   C
Sbjct: 420 LWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYC 479

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
                 K  E L  M + G+ P+ I+Y+ L+    R+D+++   + +++ +++G++P+++
Sbjct: 480 RSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDII 539

Query: 446 MFKCII-GMCSR 456
            +  ++ G C +
Sbjct: 540 TYNVVMNGFCRQ 551



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/431 (20%), Positives = 185/431 (42%), Gaps = 15/431 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+G + E  +++  M  KGL      Y+A    +CK  +  +      ++
Sbjct: 155 TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 214

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +    +P  +T+N L+       +   A ++   +   G+  D   +++LI   +++  +
Sbjct: 215 LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHL 274

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D     F +M   G+ P+   Y  L+ G  + G + +A      M  +    D + +N +
Sbjct: 275 DQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTI 334

Query: 204 ITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           +    +   +   D+ FD + E  A      PD  T   L+      G + +A  ++  +
Sbjct: 335 LNGLCKEKMLTDADKLFDEMVERGAL-----PDFYTFTTLIHGHCQDGNMTKALSLFGTM 389

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            + NIK     Y   I+   + G+ E A  ++D M  + + P+ +    LI+     G V
Sbjct: 390 TQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHV 449

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
             AF +      +GI   +++ ++++     + +  KA E    M +  + P   + N L
Sbjct: 450 SEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTL 509

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I      D + K    ++ M+  GL P+ ITY++++    R+  ++   ++L +  E G+
Sbjct: 510 INGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGI 569

Query: 441 IPNLVMFKCII 451
            P+   +  +I
Sbjct: 570 NPDRSTYTALI 580



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 169/382 (44%), Gaps = 12/382 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F++L+     ++      +  R+++  G         +L+    K   V+  +EV  E+V
Sbjct: 51  FDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVV 110

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            +GIE NV+T   +++   K G+          M    +  D V +N LI A  + G ++
Sbjct: 111 RSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLE 170

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY-- 272
            AF+++  M  +   + P   T  A++      G+  RA+ +  +I   NI  +P+    
Sbjct: 171 EAFEIMNSMADK--GLKPSLFTYNAIINGLCKKGRYARAKGI--LIEMLNIGLSPDTTTY 226

Query: 273 -TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
            T+ +  C +  ++  A  ++ +M ++GV+PD V  S+LI        ++ A    ++ K
Sbjct: 227 NTLLVESCRRD-NFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMK 285

Query: 332 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
             G+    + Y+ LM G C N  N  +AL++ + M        V   N ++  LC    L
Sbjct: 286 KFGLVPDNVIYTVLMHGYCRNG-NMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKML 344

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
               ++  +M   G  P+  T++ L+    +  ++   L L     +  + P++V +  +
Sbjct: 345 TDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTL 404

Query: 451 I-GMCS-RRYEKARTLNEHVLS 470
           I G C     EKA  L + ++S
Sbjct: 405 IDGFCKVGEMEKASELWDGMIS 426



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 133/277 (48%), Gaps = 18/277 (6%)

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           ALI    +   V R   V A +++       +++    L++    A ++    E ++++ 
Sbjct: 16  ALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQARKLREGTEAFRILR 75

Query: 262 KYNIKGTPEVYTIAINCC-SQTG-----DW-EFACSVYDDMTKKGVIPDEVFLSALIDFA 314
               KG    Y ++IN C S  G     DW E A  V+ ++ + G+  +   L+ +++  
Sbjct: 76  S---KG----YLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNAL 128

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              GK +     L E +  GI   +++Y++L+GA       ++A E+   M    LKP++
Sbjct: 129 CKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSL 188

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T NA+I  LC   +  +   +L +M ++GL P+T TY+ LLV   R+D+      +  +
Sbjct: 189 FTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGE 248

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF 471
               GV+P+LV F  +I + SR     R L++ ++ F
Sbjct: 249 MLRQGVVPDLVSFSSLIAVFSRN----RHLDQALVYF 281



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 132/318 (41%), Gaps = 47/318 (14%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLV 87
           +H Y    R G + E + + ++M  +G + +D + +    N    +K + +A + F ++V
Sbjct: 300 MHGY---CRNGNMLEALKIRDEMLEQGCV-LDVIAYNTILNGLCKEKMLTDADKLFDEMV 355

Query: 88  PN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P   TF  L+       +   A  +   + +  +K D   Y TLI    K G+++
Sbjct: 356 ERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEME 415

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              E++  M++  I PN  TYG LI+     G V++AF  + +M  K +KP  V  N +I
Sbjct: 416 KASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVI 475

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA----------- 253
               +SG   +A + L  M A+   V PDHI+   L+        +D+A           
Sbjct: 476 KGYCRSGDSSKADEFLGRMIAK--GVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEG 533

Query: 254 ----------------RE---------VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
                           R+         + KMI K  I      YT  IN      +   A
Sbjct: 534 LLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEK-GINPDRSTYTALINGHVTQDNLNEA 592

Query: 289 CSVYDDMTKKGVIPDEVF 306
              +D+M ++G  PD+VF
Sbjct: 593 FRFHDEMLQRGFAPDDVF 610



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/362 (19%), Positives = 152/362 (41%), Gaps = 21/362 (5%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           M+     S + S+    +LR+++ +G+     +   + + C   G  + +F++       
Sbjct: 1   MVHVFVRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLL------ 54

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
                + TY        +A ++ +   A+ I+RSK         N+L+    +   V+ A
Sbjct: 55  -----IRTY-------VQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELA 102

Query: 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276
           ++V  E+      ++ +  T+  ++ A    G+ D  +     +    I      Y   I
Sbjct: 103 WEVHREVVRS--GIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLI 160

Query: 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336
               + G  E A  + + M  KG+ P     +A+I+     G+   A  IL E  N G+S
Sbjct: 161 GAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLS 220

Query: 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
               +Y++L+       N+ +A E++  M    + P + + ++LI        L + +  
Sbjct: 221 PDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVY 280

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
             DMK  GL P+ + Y++L+    R  ++   L +  +  E G + +++ +  I+ G+C 
Sbjct: 281 FRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCK 340

Query: 456 RR 457
            +
Sbjct: 341 EK 342


>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic [Vitis vinifera]
          Length = 869

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/478 (21%), Positives = 201/478 (42%), Gaps = 32/478 (6%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           +L+ F ++    A   D + + ++ + +Q +   K +  +YT +I    + G ++   E+
Sbjct: 109 SLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEI 168

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM + G+ P+V ++ ALI+   + GQ   +      M+ + V P  + +N +I +C +
Sbjct: 169 FDEMPSHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCAR 228

Query: 210 SGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G   +    + A+M  E   +  D +T   L+ ACA  G  D A  V++ +++  I   
Sbjct: 229 GGLDWEELLGLFAQMRHE--GIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPD 286

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+  +    +    E    +  +M   G  PD    + L++    +G ++ A  + +
Sbjct: 287 ITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFR 346

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + +  G      +YS L+        +    +L+  MK    +P  +T N LI    +G 
Sbjct: 347 QMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGG 406

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              + + +  DM    + PN  TY  L+ AC +    E    +L    E GV+P+   + 
Sbjct: 407 YFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYT 466

Query: 449 CIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 508
            +I      Y +A    E +++FN+                       G+ PTVE  + +
Sbjct: 467 GVI----EAYGQAALYEEALVAFNTMNE-------------------VGSKPTVETYNSL 503

Query: 509 LGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDP--RAFSLLEEA 561
           +            E ++  +G S  A  R     +I+ F   G+++   +A+  +E+A
Sbjct: 504 IQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKA 561



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/456 (21%), Positives = 192/456 (42%), Gaps = 45/456 (9%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           +H V+  + S+  LI    R G+    ++LL+ M+++ +      Y+    +  +     
Sbjct: 174 SHGVAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDW 233

Query: 78  KEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +E    F  + +  +     T+N L+S CA     + A  V R + E G+  D   Y+ L
Sbjct: 234 EELLGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYL 293

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           + T  K  +++ + E+  EM + G  P++ +Y  L++  A++G + +A G +  M+    
Sbjct: 294 VETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGC 353

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+   ++ L+   G+ G  D   D+  EM  +V   +P+  T   L+      G     
Sbjct: 354 VPNAATYSILLNLYGRHGRYDDVRDLFLEM--KVSNTEPNAATYNILINVFGEGGYFKEV 411

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             ++  + + N++   E Y   I  C + G  E A  +   M +KGV+P     + +I+ 
Sbjct: 412 VTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEA 471

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSL-------------------MGACSNAKN 354
            G A   E A          G    + +Y+SL                   MG    A+N
Sbjct: 472 YGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARN 531

Query: 355 ----------------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
                           +++A++ Y  M+  +  P   T+ A+++  C    + ++ E   
Sbjct: 532 RDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFG 591

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           ++K+LG+ P+ + Y ++L    + D  +    LL +
Sbjct: 592 EIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDE 627



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/421 (23%), Positives = 173/421 (41%), Gaps = 11/421 (2%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           + ++ +L R  ++SE   LL++ME  G    D   +           +IKEA   F+ + 
Sbjct: 294 VETFGKLNRLEKVSE---LLKEMESGGSFP-DITSYNVLLEAHAQSGSIKEAMGVFRQMQ 349

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P  +T+++L+++       +    +   ++ +  + +   Y  LI    + G   
Sbjct: 350 GAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFK 409

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
            +  +FH+MV   +EPN+ TY  LI  C K G    A      M  K V P    +  +I
Sbjct: 410 EVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVI 469

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            A GQ+   + A      MN EV    P   T  +L++  A  G    +  +   + +  
Sbjct: 470 EAYGQAALYEEALVAFNTMN-EVGS-KPTVETYNSLIQMFAKGGLYKESEAILLKMGQSG 527

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +    + +   I    Q G +E A   Y +M K    PDE  L A++     AG VE + 
Sbjct: 528 VARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESE 587

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E   E K  GI   ++ Y  ++   + A  W  A +L + M + ++      +  +I   
Sbjct: 588 EQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGD 647

Query: 385 CDGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
            D D   + +E V   +KS G       Y+ LL A       E    +L++A + G+ P 
Sbjct: 648 YDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNEATKRGLFPE 707

Query: 444 L 444
           L
Sbjct: 708 L 708



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/435 (20%), Positives = 178/435 (40%), Gaps = 42/435 (9%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           +    ++G     + L + M+R+     ++  +     V   +  +++    F  +P+  
Sbjct: 117 FKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHG 176

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAM 146
             P++ +F  L++    +   + + ++L  +++  +      Y T+I +CA+ G   + +
Sbjct: 177 VAPSVFSFTALINAYGRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEEL 236

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAG------QVAKAFGAYGI------------- 187
             +F +M + GI+ ++ TY  L+  CA+ G       V +     GI             
Sbjct: 237 LGLFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVET 296

Query: 188 ----------------MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231
                           M S    PD   +N L+ A  QSG++  A  V  +M        
Sbjct: 297 FGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGA--GCV 354

Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291
           P+  T   L+      G+ D  R+++  +   N +     Y I IN   + G ++   ++
Sbjct: 355 PNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTL 414

Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
           + DM ++ V P+      LI   G  G  E A +IL     +G+     +Y+ ++ A   
Sbjct: 415 FHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQ 474

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A  +++AL  +  M  +  KPTV T N+LI     G    ++  +L  M   G+  N  T
Sbjct: 475 AALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDT 534

Query: 412 YSILLVACERKDDVE 426
           ++ ++ A  +    E
Sbjct: 535 FNGVIEAFRQGGQFE 549


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 175/416 (42%), Gaps = 45/416 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N   R G +++ I  +E ME  GL      +++     C   K + +A  + K +     
Sbjct: 394 NGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFC-DMKEMDKAEEWVKKMAEKGV 452

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P++ T+N L+         +  FQ+L  ++E G+K +   Y +LI    K GK+     
Sbjct: 453 TPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEI 512

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  +M+  G+ PN   Y  LIDG    G+V  A   +  M    + P  V +N LI    
Sbjct: 513 VLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLC 572

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +  A D L ++ +  H   PD IT  +L+   ANAG V +   +Y+ +    IK T
Sbjct: 573 KKGKLTEAEDFLTQITSSGH--SPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPT 630

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I+ CS+ G  E    +Y++M +  ++PD V  +A+I      G          
Sbjct: 631 VRTYHPLISGCSKEG-IELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIG---------- 679

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
                                    N QKA  L++ M    + P   T N+LI       
Sbjct: 680 -------------------------NTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREG 714

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPN 443
           +L    +++++MK+  L P   TY IL+   C+ K D     +   +  E+  +PN
Sbjct: 715 KLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLK-DFSGAYVWYREMVENNFLPN 769



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 190/433 (43%), Gaps = 11/433 (2%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFF 84
           YN LI    R+ RI +   + ++M    L+     Y+      CK  +   A K   R  
Sbjct: 214 YNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMK 273

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +    P + TFN L+S     +  + A  +L+ ++  G   D   Y+ L     +    +
Sbjct: 274 EKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGN 333

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              E++ +    GI  N +T   L++G  K G+V KA           +  D V++N  +
Sbjct: 334 GAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFV 393

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               + G +++A   +  M  E   + P+ IT  +L+    +  ++D+A E  K + +  
Sbjct: 394 NGYCRIGDMNKAILTIERM--ESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKG 451

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +  + E Y   I+   +   ++    + + M + GV P+ V   +LI+     GK+  A 
Sbjct: 452 VTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAE 511

Query: 325 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            +L++   +G+      Y+ L+ G+C   K  + AL  ++ M   ++ PT+ T N LI  
Sbjct: 512 IVLRDMICRGVLPNAQVYNMLIDGSCMVGK-VKDALRFFDEMMRSEISPTLVTYNVLIDG 570

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           LC   +L +  + L+ + S G  P+ ITY+ L+       +V   L L    K  G+ P 
Sbjct: 571 LCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPT 630

Query: 444 LVMFKCIIGMCSR 456
           +  +  +I  CS+
Sbjct: 631 VRTYHPLISGCSK 643



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 192/442 (43%), Gaps = 57/442 (12%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS------- 73
           V+  + ++N L+    +  ++ E   LL++ME  G +     Y   F  + +        
Sbjct: 277 VAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAM 336

Query: 74  ---QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
              ++A ++  R    + N T S   +L  +C   K  E A ++L+   E GL AD  +Y
Sbjct: 337 ELYEQATEKGIR----INNYTGSI--LLNGLCKQGK-VEKAEEILKKFTENGLVADEVIY 389

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
            T +    + G ++        M + G+ PN  T+ +LID      ++ KA      M  
Sbjct: 390 NTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAE 449

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           K V P    +N LI   G+    DR F +L +M  E   V P+ ++ G+L+      G++
Sbjct: 450 KGVTPSVETYNTLIDGYGKLCTFDRCFQILEQM--EEIGVKPNVVSYGSLINCLCKDGKI 507

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
             A  V + +    +    +VY + I+     G  + A   +D+M +  + P  V  + L
Sbjct: 508 LEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVL 567

Query: 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370
           ID     GK+  A + L +  + G S  +I+Y+SL+   +NA N  K L LYE MK++ +
Sbjct: 568 IDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGI 627

Query: 371 KPTVSTMNALITALC-DGDQLPK-------TMEVLSD----------------------- 399
           KPTV T + LI+    +G +L +        M +L D                       
Sbjct: 628 KPTVRTYHPLISGCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSL 687

Query: 400 ---MKSLGLCPNTITYSILLVA 418
              M   G+ P+ +TY+ L++ 
Sbjct: 688 HQGMLDQGIHPDKMTYNSLILG 709



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 161/396 (40%), Gaps = 39/396 (9%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRL--------------------------------- 117
           TLS  +ML+SVC  SK    A ++                                    
Sbjct: 107 TLS--DMLLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLF 164

Query: 118 --VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
             ++ +G + D  +Y   I    K   +    E    M   G+ PNV  Y  LI G  + 
Sbjct: 165 MEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCRE 224

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            ++  A   +  M + N+    V +N LI    + G +D AF +   M  +   V P+ I
Sbjct: 225 KRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEK--SVAPNII 282

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T  +L+       ++  AR + K +           Y+I  +   +  D   A  +Y+  
Sbjct: 283 TFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQA 342

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
           T+KG+  +    S L++     GKVE A EIL++    G+    + Y++ +       + 
Sbjct: 343 TEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDM 402

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            KA+   E M+S  L+P   T N+LI   CD  ++ K  E +  M   G+ P+  TY+ L
Sbjct: 403 NKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTL 462

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +    +    +    +L Q +E GV PN+V +  +I
Sbjct: 463 IDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLI 498



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/382 (22%), Positives = 167/382 (43%), Gaps = 38/382 (9%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
             + L  +++ G++ +  +Y  LI    +  ++    ++F EM N  +  ++ TY  LID
Sbjct: 195 GMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLID 254

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G  K G++  AF     M+ K+V P+ + FN+L++   +   +  A  +L EM  EV+  
Sbjct: 255 GYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEM--EVNGF 312

Query: 231 DPDHITI--------------GA---------------------LMKACANAGQVDRARE 255
            PD  T               GA                     L+      G+V++A E
Sbjct: 313 MPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEE 372

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + K   +  +     +Y   +N   + GD   A    + M   G+ P+ +  ++LID   
Sbjct: 373 ILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFC 432

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
              +++ A E +++   +G++  + +Y++L+        + +  ++ E M+ I +KP V 
Sbjct: 433 DMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVV 492

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           +  +LI  LC   ++ +   VL DM   G+ PN   Y++L+        V+  L    + 
Sbjct: 493 SYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEM 552

Query: 436 KEDGVIPNLVMFKCII-GMCSR 456
               + P LV +  +I G+C +
Sbjct: 553 MRSEISPTLVTYNVLIDGLCKK 574



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 142/342 (41%), Gaps = 20/342 (5%)

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           N  Q  +  +++  I     +    +Y  AI    +  + +      D M K+GV P+  
Sbjct: 153 NEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVF 212

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
             + LI       ++  A ++  E  N  +   I++Y++L+           A ++ E M
Sbjct: 213 IYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERM 272

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           K   + P + T N+L++ LC   ++ +   +L +M+  G  P+  TYSIL     R DD 
Sbjct: 273 KEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDG 332

Query: 426 EVGLMLLSQAKEDGV-IPNLVMFKCIIGMCSR-RYEKA----RTLNEHVL--------SF 471
              + L  QA E G+ I N      + G+C + + EKA    +   E+ L        +F
Sbjct: 333 NGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTF 392

Query: 472 NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVS 531
            +G  +I +   ++  +   E+   G  P     + ++         D  E  V+ +   
Sbjct: 393 VNGYCRIGDMNKAILTIERMESF--GLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEK 450

Query: 532 ADALKRSNLCSLIDGFGE---YDPRAFSLLEEAASFGIVPCV 570
                     +LIDG+G+   +D R F +LE+    G+ P V
Sbjct: 451 GVTPSVETYNTLIDGYGKLCTFD-RCFQILEQMEEIGVKPNV 491


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 158/324 (48%), Gaps = 5/324 (1%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  LI    +SG+++   ++F+EM NA IEPNV T   L+DG  K  +++ A   + +M+
Sbjct: 266 FNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQ 325

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            K +K + V +   I A      +++A + L EM+ +     PD +    L+   A AG+
Sbjct: 326 QKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKD--GCFPDAVVYYTLICGLAQAGR 383

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D A  V   + +         Y + I+   +    + A    ++M   GV PD V  + 
Sbjct: 384 LDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNT 443

Query: 310 LIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           LI +    G  + A + +++  + +G+S  + +Y +L+ A     N  +A+++++ M ++
Sbjct: 444 LISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNV 503

Query: 369 --KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
             K+ P     N LI +LC   Q+   + +L DMK  G+ PNT TY+ +  A   K+ ++
Sbjct: 504 ASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLD 563

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCI 450
               L+ +  E    P+ +  + +
Sbjct: 564 KAFKLMDRMVEQACNPDYITMEIL 587



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 121/522 (23%), Positives = 207/522 (39%), Gaps = 94/522 (18%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDM--ERKGLLDMDKVYHARFFNVCKS---QK 75
           +A + + +    N L++ GR+   +++L++M          DK     F N+ K    + 
Sbjct: 35  HAKNTNVRNEIINLLLKSGRVDNAMNVLDEMLLPESEFRPNDKTAGIVFNNLLKIDGLEG 94

Query: 76  AIKE------AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCK 128
            +KE        +F K    P       L+S    S ++  A+ +L  L+   GLK D  
Sbjct: 95  RVKEDEIAGLVSKFGKHNIFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLK-DAA 153

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG---------------------- 166
               L+T   K+ +   M  +  +M +  I+P V T+G                      
Sbjct: 154 PCNALLTGLGKAREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKM 213

Query: 167 -------------------ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
                               LIDG  K G+  +A    G MRS    P    FN LI   
Sbjct: 214 KGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGY 273

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +SG ++ A  +  EM  E   ++P+ IT+  L+       ++  A E ++++ +  +KG
Sbjct: 274 CRSGEIEVAHKLFNEM--ENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKG 331

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT+ IN      +   A    D+M+K G  PD V    LI     AG+++ A  ++
Sbjct: 332 NNVTYTVFINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVV 391

Query: 328 QEAKNQGISVGIISYSSLM------GACSNAKNWQKALEL-------------------- 361
            + K  G  +  + Y+ L+           A+ W   +EL                    
Sbjct: 392 SKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKI 451

Query: 362 ------YEHMKSIK----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPNT 409
                 ++ MK +     L PTV T  ALI A C  + + + +++  +M ++   + PNT
Sbjct: 452 GNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNT 511

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + Y+IL+ +  ++  V   L LL   K  GV+PN   +  I 
Sbjct: 512 VIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIF 553



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 138/330 (41%), Gaps = 4/330 (1%)

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T LI+   +SG  +  + +   ++      +     AL+ G  KA +  K       M+ 
Sbjct: 121 TQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKD 180

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP----VDPDHITIGALMKACAN 246
            N++P  + F  LI    +   +D A +V  +M  E       V PD I    L+     
Sbjct: 181 MNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCK 240

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
            G+ + A  +   +       T   +   IN   ++G+ E A  ++++M    + P+ + 
Sbjct: 241 VGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVIT 300

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
           L+ L+D      ++  A E  +  + +G+    ++Y+  + A  N  N  KA+E  + M 
Sbjct: 301 LNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMS 360

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
                P       LI  L    +L     V+S +K  G C + + Y++L+    +K+ ++
Sbjct: 361 KDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLD 420

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
                L++ +  GV P+ V +  +I   S+
Sbjct: 421 RAQEWLNEMELAGVKPDSVTYNTLISYFSK 450



 Score = 40.0 bits (92), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 103/247 (41%), Gaps = 30/247 (12%)

Query: 240 LMKACANAGQVDRAREVYKMI--HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
           L++     G VD A   +  +  H  N     E+    IN   ++G  + A +V D+M  
Sbjct: 12  LLRRLGRIGMVDEALAAFSTLDSHAKNTNVRNEI----INLLLKSGRVDNAMNVLDEM-- 65

Query: 298 KGVIPDEVF----------LSALIDFAGHAGKV--EAAFEILQEAKNQGISVGIISYSSL 345
             ++P+  F           + L+   G  G+V  +    ++ +     I    I+ + L
Sbjct: 66  --LLPESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIALTQL 123

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
           +     + N   A  + +++  +      +  NAL+T L    +  K   ++  MK + +
Sbjct: 124 ISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKDMNI 183

Query: 406 CPNTITYSIL---LVACERKDD-VEVGLMLLSQAKEDGVI--PNLVMFKCII-GMCS-RR 457
            P  IT+ IL   L    R DD +EV   +  + +E  V   P+ +M+  +I G+C   R
Sbjct: 184 QPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGR 243

Query: 458 YEKARTL 464
            E+A  L
Sbjct: 244 QEEALCL 250


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/439 (20%), Positives = 206/439 (46%), Gaps = 12/439 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVPNPTLS 93
           GR+ E ++++ +M  +GL+   +  +     V      ++ A   F     + V   ++S
Sbjct: 149 GRLKEAVEMVIEMHNQGLVPNTRTLNW-IIKVTSEMGLVEYAELLFEEMCVRGVQPDSIS 207

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
              M++  C      E A + L ++ E G   D   +T +I+  +  G        F  +
Sbjct: 208 YRVMVVMYCKIGNILE-ADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRL 266

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           V+ G+EPN+  +  +I+G  K G + +AF     M  K  KP+     +LI    + G  
Sbjct: 267 VDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWT 326

Query: 214 DRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           ++AF +  ++  +E H   P+ +T  A++       +++RA  +   + +  +      Y
Sbjct: 327 EKAFRLFLKLVRSENH--KPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTY 384

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  I+   + G++E A  + + M+ +G  P+    +A+++     G+V+ A+++L++   
Sbjct: 385 TTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQ 444

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+     +Y+ LM      +N ++AL L+  M  I ++P + +   LI   C  +++ +
Sbjct: 445 NGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKE 504

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
           +     +   +G+ P   TY+ ++    R+ ++ + +    +  + G  P+ + +  II 
Sbjct: 505 SEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIIS 564

Query: 452 GMCSR-RYEKARTLNEHVL 469
           G+C + + ++AR+L + ++
Sbjct: 565 GLCKQSKRDEARSLYDSMI 583



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 114/520 (21%), Positives = 213/520 (40%), Gaps = 64/520 (12%)

Query: 83  FFKLVPNPTLSTFNMLMSVCASS----KDSEGAFQVLRLVQEA----------------- 121
           F   +  P    F  L  VCA S    ++SE A +V+R + E+                 
Sbjct: 102 FHWAIGYPKFRHFMRLYIVCAMSLIGNRNSEKACEVMRCMVESFSEVGRLKEAVEMVIEM 161

Query: 122 ---GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
              GL  + +    +I   ++ G V+    +F EM   G++P+  +Y  ++    K G +
Sbjct: 162 HNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRGVQPDSISYRVMVVMYCKIGNI 221

Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHI 235
            +A     +M  +    D   F  +I+     G   RA   F  L +M  E     P+ I
Sbjct: 222 LEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRALWYFRRLVDMGLE-----PNLI 276

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIA--INCCSQTGDWEFACSVY 292
               +++     G + +A   ++M+ +   KG  P VYT    I+   + G  E A  ++
Sbjct: 277 NFTCMIEGLCKRGSIKQA---FEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLF 333

Query: 293 DDMTK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
             + + +   P+ +  +A+I       K+  A  +L   K QG+     +Y++L+     
Sbjct: 334 LKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCK 393

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           A N+++A +L   M S    P + T NA++  LC   ++ +  ++L D    GL P+  T
Sbjct: 394 AGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFT 453

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF 471
           Y+IL+    +++++   L L ++  + G+ P++  +  +I +  R               
Sbjct: 454 YNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCR--------------- 498

Query: 472 NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVS 531
                  EN+    + M + EA+  G IPT +  + ++       N  +  +    L   
Sbjct: 499 -------ENRMKE-SEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDH 550

Query: 532 ADALKRSNLCSLIDGFGEYDPR--AFSLLEEAASFGIVPC 569
             A       ++I G  +   R  A SL +     G+VPC
Sbjct: 551 GCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPC 590



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 154/358 (43%), Gaps = 44/358 (12%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +TF +++S  +    +  A    R + + GL+ +   +T +I    K G +   FE+  E
Sbjct: 241 ATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEE 300

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALITA-CGQ- 209
           MV  G +PNV+T+ +LIDG  K G   KAF  +  ++RS+N KP+ + + A+I+  C + 
Sbjct: 301 MVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRED 360

Query: 210 ---------------------------------SGAVDRAFDVLAEMNAEVHPVDPDHIT 236
                                            +G  +RA+D++  M++E     P+  T
Sbjct: 361 KLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSE--GFSPNLCT 418

Query: 237 IGALMKACANAGQVDRAREVYKMIH---KYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
             A++      G   R +E YKM+    +  +K     Y I ++   +  +   A ++++
Sbjct: 419 YNAIVNGLCKRG---RVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFN 475

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
            M K G+ PD    + LI       +++ +    +EA   GI     +Y+S++       
Sbjct: 476 KMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREG 535

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
           N   A++ +  +      P   T  A+I+ LC   +  +   +   M   GL P  +T
Sbjct: 536 NLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVT 593



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 139/322 (43%), Gaps = 10/322 (3%)

Query: 70  VCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQV-LRLVQEAGLK 124
           +CK + +IK+AF   + +      P + T   L+        +E AF++ L+LV+    K
Sbjct: 285 LCK-RGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHK 343

Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
            +   YT +I+   +  K++    +   M   G+ PN +TY  LIDG  KAG   +A+  
Sbjct: 344 PNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDL 403

Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
             +M S+   P+   +NA++    + G V  A+ +L +     + + PD  T   LM   
Sbjct: 404 MNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLED--GFQNGLKPDKFTYNILMSEH 461

Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
                + +A  ++  + K  I+     YT  I    +    + +   +++  + G+IP  
Sbjct: 462 CKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTN 521

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 363
              +++I      G +  A +      + G +   I+Y +++ G C  +K   +A  LY+
Sbjct: 522 KTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISGLCKQSKR-DEARSLYD 580

Query: 364 HMKSIKLKPTVSTMNALITALC 385
            M    L P   T   L    C
Sbjct: 581 SMIEKGLVPCEVTRITLAYEYC 602



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 10/190 (5%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF-- 83
           ++Y  LI    + G      DL+  M  +G       Y+A    +CK  + ++EA++   
Sbjct: 382 NTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGR-VQEAYKMLE 440

Query: 84  --FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             F+    P   T+N+LMS     ++   A  +   + + G++ D   YTTLI    +  
Sbjct: 441 DGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCREN 500

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           ++      F E V  GI P   TY ++I G  + G +  A   +  +      PD + + 
Sbjct: 501 RMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYG 560

Query: 202 ALITA-CGQS 210
           A+I+  C QS
Sbjct: 561 AIISGLCKQS 570


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 155/325 (47%), Gaps = 2/325 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  L+++  +  K + +  +F EM   GI+ NV T   LI+       V   F  +G   
Sbjct: 43  FNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKTL 102

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            +  KPD V+F  LI    + G  + A  +L EM   +    PD +T  +LM+   + G+
Sbjct: 103 KRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMG--LVGCVPDVVTCNSLMRGYCSQGK 160

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D+ R+++ ++    +K     Y+I IN   +    + A  ++D+M+ +GV+P+ V  + 
Sbjct: 161 IDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNT 220

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI     A +   A  + ++    G+S  I++YS+L+       N  + L L++ M+   
Sbjct: 221 LIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRL 280

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           +KP +     +I  +C   ++    EVLS +   GL P+  TY+ L+    R+  +   L
Sbjct: 281 VKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEAL 340

Query: 430 MLLSQAKEDGVIPNLVMFKCIIGMC 454
            L  + +EDG +P    +  ++  C
Sbjct: 341 RLFRKMEEDGCMPGSCSYNVLLQGC 365



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 169/394 (42%), Gaps = 62/394 (15%)

Query: 208 GQSGAVDRAFDVLAEMNA--EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           G  G +D   D LA  N   + +P  P  I    L+ +     + +    ++K +    I
Sbjct: 16  GYFGNLD---DALASFNRMLDRNP-QPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGI 71

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
           K      +I INC       ++  SV+    K+G  PD V  + LID     GK E A  
Sbjct: 72  KYNVCTLSILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAG 131

Query: 326 ILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           +L+E    G    +++ +SLM G CS  K   K  +++  M S  LKP V + +  I   
Sbjct: 132 LLKEMGLVGCVPDVVTCNSLMRGYCSQGK-IDKVRKIFHLMVSKGLKPDVYSYSIFINGY 190

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE--RKDDVEV-------------- 427
           C  +++ + ME+  +M   G+ PN +TY+ L+ A C+  R  D +V              
Sbjct: 191 CKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDI 250

Query: 428 ------------------GLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEH 467
                              L+L  + +   V P+LV++  II GMC SR+ + A+ +   
Sbjct: 251 LAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSR 310

Query: 468 VLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVL-GCLQL 514
           ++     +P +   +T+L            AL ++R+    G +P     + +L GCLQ 
Sbjct: 311 LI-VEGLKPDVHT-YTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQH 368

Query: 515 PYNADIRERLVE--NLGVSADALKRSNLCSLIDG 546
              + + + + E  + G  ADA+ R+ L   + G
Sbjct: 369 NDTSTVVQLIHEMADRGFYADAVTRTFLKDFLPG 402



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 118/284 (41%), Gaps = 4/284 (1%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T N LM    S    +   ++  L+   GLK D   Y+  I    K  K+D   E+
Sbjct: 143 PDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMEL 202

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM + G+ PN  TY  LI    +A +   A   +  M +  + PD + ++ L+    +
Sbjct: 203 FDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCK 262

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +D    +  EM   +  V PD +    ++     + +V  A+EV   +    +K   
Sbjct: 263 QGNLDEMLVLFQEMQRRL--VKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDV 320

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  ++   + G    A  ++  M + G +P     + L+             +++ E
Sbjct: 321 HTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHE 380

Query: 330 AKNQGISVGIISYSSLMGAC--SNAKNWQKALELYEHMKSIKLK 371
             ++G     ++ + L      +++   ++ L L+E  + +K+K
Sbjct: 381 MADRGFYADAVTRTFLKDFLPGNDSPAIKQLLGLFEGHQGVKVK 424



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 38/155 (24%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +Y+ L+    +QG + E + L ++M+R+                          
Sbjct: 246 LSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRR-------------------------- 279

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAK 139
                 +  P L  + ++++    S+  + A +VL RL+ E GLK D   YT L+    +
Sbjct: 280 ------LVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVE-GLKPDVHTYTALVDGLCR 332

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
            G +     +F +M   G  P   +Y  L+ GC +
Sbjct: 333 EGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQ 367


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 170/417 (40%), Gaps = 77/417 (18%)

Query: 8   MLQFPYPNGKHANYAH----DVSEQLHSYNRL----IRQGRISECIDLLEDMERKGLLDM 59
           M + P     +A Y H     V  +   +N L    IR G+++   ++ ++M R+G+   
Sbjct: 217 MNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGV--- 273

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
                                         PT+ TFN LMS    + D   A  +  L+ 
Sbjct: 274 -----------------------------QPTVVTFNTLMSGMCKASDLNNANALRGLMA 304

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           +AG+  D   Y   I    K+G++    E+F EM   G+ PN      LID   K G V 
Sbjct: 305 KAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVT 364

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239
                   M ++ VK D V +NAL+    +   +  A D++ EM  +   + PD +T   
Sbjct: 365 AGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKD--GLKPDKVTYTT 422

Query: 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           L+  C   G++D A E+ + +    +      YT  I+  S+ G    A  +  +M + G
Sbjct: 423 LIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAG 482

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           + PD    + +ID     G V+  F+ L+E +N+G + GI++Y                 
Sbjct: 483 LQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTY----------------- 525

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
                             N ++   C   Q+     +L+ M ++G+CPN ITY+ILL
Sbjct: 526 ------------------NVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILL 564



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 165/363 (45%), Gaps = 10/363 (2%)

Query: 98  LMSVCASSKDSEGAF----QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           L+S  A     EG       +L L    G++     ++ L+    +   V   +  +  +
Sbjct: 177 LVSAVAKVYADEGLLPDGCSLLLLALRRGIRVPMPAWSDLMN---RLPSVPEAYAFYLHL 233

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           ++AG+ P    +  L+    ++G++A A   +  M  + V+P  V FN L++   ++  +
Sbjct: 234 LDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDL 293

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           + A + L  + A+   + PD  T GA ++     G++  A E+++ + +  +     V T
Sbjct: 294 NNA-NALRGLMAKAG-IAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLT 351

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I+   + GD      +  +M  +GV  D V  +AL++       ++AA +I++E +  
Sbjct: 352 TLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKD 411

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+    ++Y++L+  C        A+E+ + M    +     T  ALI+ L    +    
Sbjct: 412 GLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDA 471

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 452
             +L +M   GL P+  TY++++ A  +  DV+ G   L + +  G  P +V +  ++ G
Sbjct: 472 ERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNG 531

Query: 453 MCS 455
            CS
Sbjct: 532 FCS 534



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 120/282 (42%), Gaps = 41/282 (14%)

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236
            V +A+  Y  +    V P+   FN L+    +SG +  A +V  EM      V P  +T
Sbjct: 222 SVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRR--GVQPTVVT 279

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDD 294
              LM     A  ++ A  +  ++ K  I   P+VYT    I    +TG  + A  ++++
Sbjct: 280 FNTLMSGMCKASDLNNANALRGLMAKAGI--APDVYTYGAFIQGLCKTGRIQDAMEMFEE 337

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M ++G+ P+ V L+ LID     G V A  E+  E   +G+   +++Y            
Sbjct: 338 MCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAY------------ 385

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
                                  NAL+   C    +    +++ +M+  GL P+ +TY+ 
Sbjct: 386 -----------------------NALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTT 422

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
           L+  C ++ +++  + +  +  ++GV  + V +  +I   S+
Sbjct: 423 LIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 464



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 82/179 (45%)

Query: 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340
           ++G    A +V+D+M ++GV P  V  + L+     A  +  A  +       GI+  + 
Sbjct: 254 RSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVY 313

Query: 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
           +Y + +         Q A+E++E M    L P    +  LI A C    +   +E+  +M
Sbjct: 314 TYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEM 373

Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
            + G+  + + Y+ L+    R  D++    ++ + ++DG+ P+ V +  +I  C +  E
Sbjct: 374 ATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGE 432


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 202/493 (40%), Gaps = 61/493 (12%)

Query: 21  YAHDVSEQLHSYNRLI------RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           + HD      SYNR++      R G  SE + L+ DMER G+       +     +    
Sbjct: 56  FRHDA----FSYNRILALLFRTRAGP-SEALRLVADMERDGVAGNISTINL----LVGMG 106

Query: 75  KAIKEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
               E  R  +L     L     T+  ++     S++    FQV   ++  G K D   Y
Sbjct: 107 GGGVEVERCLELASKWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAY 166

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             L+   AK+G VD  F+VF +M      P+ +TY  LI    KAG+ +K    +  M S
Sbjct: 167 NMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVS 226

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           K    + + FN +I A G++  VD+   VL++M    +   P+  T    +   A  GQ+
Sbjct: 227 KGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVE--NDCQPNQFTYSITLDILATEGQL 284

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA----CSVYDD------------ 294
            R  EV  +  ++  +    +Y+  +    ++G    A    C +++             
Sbjct: 285 HRLNEVLDICSRFMNRS---IYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSM 341

Query: 295 -------------------MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
                              M +KG++ D    + +    G   +V     +  + K  GI
Sbjct: 342 LEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGI 401

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              + +Y+ ++ +        KA EL+E M++   KP V T N+LI  L     L +   
Sbjct: 402 IPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHM 461

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           +  +M+  G  P+  TYSIL+    + + VE+   L  +   +G  PN+V +  ++    
Sbjct: 462 LFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLE 521

Query: 456 RR--YEKARTLNE 466
           RR   E+A  L E
Sbjct: 522 RRGKTEEAHKLYE 534



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 180/432 (41%), Gaps = 12/432 (2%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           +R   +S+   + E+M RKG   +D   +    +       + +AF+ F+ +      P 
Sbjct: 139 LRSREVSKGFQVYEEMRRKGY-KLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPD 197

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+ +L+ +   +  +         +   G   +   + T+I    K+  VD +  V  
Sbjct: 198 AYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLS 257

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI-MRSKNVKPDRVVFNALITACGQS 210
           +MV    +PN  TY   +D  A  GQ+ +      I  R  N    R +++ L+ +  +S
Sbjct: 258 KMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMN----RSIYSYLVKSLCKS 313

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G    A +V   M       D D     ++++   NA +   A ++  M+ +  I     
Sbjct: 314 GHASEAHNVFCRMWNSHEKGDRDAFV--SMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVG 371

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           +Y +  +   +     F  +++D M   G+IPD    + +I   G  G V+ A E+ +  
Sbjct: 372 MYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVM 431

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           +       +++Y+SL+       +  +A  L++ M+     P V T + LI      +++
Sbjct: 432 EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKV 491

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                +  +M S G  PN +TY+ILL   ER+   E    L    K+ G+IP+ + +  +
Sbjct: 492 EMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551

Query: 451 IGMCSRRYEKAR 462
             + SR     R
Sbjct: 552 ERLESRSQRTVR 563


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 173/368 (47%), Gaps = 11/368 (2%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPNPTLSTF 95
           G + +   +  +M + G      VY+A    + K   +QKA++   R  +    P+ +T+
Sbjct: 217 GLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 276

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
            ML+++   +  S  A +V   ++    K +   +T L+   A+ G  +   E+F ++  
Sbjct: 277 TMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 336

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           AG+EP+V+ Y AL++  ++AG    A   + +M+    +PDR  +N ++ A G++G  + 
Sbjct: 337 AGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHED 396

Query: 216 A---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           A   F+V+  +   + P    H+    L+ A + AG+V +  E+   +HK  IK    V 
Sbjct: 397 AQAVFEVMKRLG--ITPTMKSHML---LLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVL 451

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              +N   + G +E    V   M K     D    + LI+  G AG      E+ +    
Sbjct: 452 NSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPA 511

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           + +   +++++S +GA S  K + + LE++E M      P   T   L++A  +GDQ+ +
Sbjct: 512 RNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQE 571

Query: 393 TMEVLSDM 400
              V+  M
Sbjct: 572 VTTVIRTM 579



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 153/340 (45%), Gaps = 8/340 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+   +N  +       D++ A ++   ++    +     YT LI    K+ K     +V
Sbjct: 236 PSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKV 295

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           FHEM +   +PN+ T+ AL++  A+ G   KA   +  ++   ++PD   +NAL+ A  +
Sbjct: 296 FHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSR 355

Query: 210 SG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           +G        F ++  M  E     PD  +   ++ A   AG  + A+ V++++ +  I 
Sbjct: 356 AGFPYGAAEIFSLMQHMGCE-----PDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGIT 410

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
            T + + + ++  S+ G       + + M K G+ PD   L+++++  G  G+ E   E+
Sbjct: 411 PTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEV 470

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L   +       I +Y+ L+     A  + +  EL+  + +  L P V T  + I A   
Sbjct: 471 LTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSR 530

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
             Q  + +EV  +M   G  P+  T  +LL AC   D ++
Sbjct: 531 RKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQ 570



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 152/366 (41%), Gaps = 2/366 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT  T+ +L+    +S   E A  V   +++ G      +Y   I    K G      E+
Sbjct: 201 PTEDTYALLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEI 260

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M     +P+  TY  LI+   KA +   A   +  MRS+  KP+   F AL+ A  +
Sbjct: 261 FERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAR 320

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  ++A ++  ++      ++PD     ALM+A + AG    A E++ ++     +   
Sbjct: 321 EGLCEKAEEIFEQLQEA--GLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDR 378

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I ++   + G  E A +V++ M + G+ P       L+     AGKV    EI+ +
Sbjct: 379 ASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQ 438

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI       +S++        ++K  E+   M+       +ST N LI        
Sbjct: 439 MHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGF 498

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
             +  E+   + +  L P+ +T++  + A  R+      L +  +  + G  P+    K 
Sbjct: 499 FARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKV 558

Query: 450 IIGMCS 455
           ++  CS
Sbjct: 559 LLSACS 564



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 132/310 (42%), Gaps = 4/310 (1%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           +  +   P+V  Y  LID   +     KA   Y  +      P    +  L+ A   SG 
Sbjct: 159 LYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSGL 218

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +++A  V AEM     P  P  +   A +      G   +A E+++ + +   + +   Y
Sbjct: 219 LEKAEAVFAEMRKYGFP--PSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATY 276

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T+ IN   +      A  V+ +M  +   P+    +AL++     G  E A EI ++ + 
Sbjct: 277 TMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQE 336

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+   + +Y++LM A S A     A E++  M+ +  +P  ++ N ++ A         
Sbjct: 337 AGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHED 396

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
              V   MK LG+ P   ++ +LL A  R   V     +++Q  + G+ P+  +   ++ 
Sbjct: 397 AQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLN 456

Query: 453 MCSR--RYEK 460
           +  R  ++EK
Sbjct: 457 LYGRLGQFEK 466



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 140/381 (36%), Gaps = 33/381 (8%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176
           ++  +    D   Y  LI    +          + E++ A   P   TY  L+     +G
Sbjct: 158 ILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELLEARCVPTEDTYALLLKAYCTSG 217

Query: 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE---------- 226
            + KA   +  MR     P  VV+NA I    + G   +A ++   M  +          
Sbjct: 218 LLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYT 277

Query: 227 -----------------------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
                                       P+  T  AL+ A A  G  ++A E+++ + + 
Sbjct: 278 MLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEA 337

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            ++     Y   +   S+ G    A  ++  M   G  PD    + ++D  G AG  E A
Sbjct: 338 GLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDA 397

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             + +  K  GI+  + S+  L+ A S A    K  E+   M    +KP    +N+++  
Sbjct: 398 QAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNL 457

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
                Q  K  EVL+ M+      +  TY+IL+    R         L        +IP+
Sbjct: 458 YGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPD 517

Query: 444 LVMFKCIIGMCSRRYEKARTL 464
           +V +   IG  SRR +  R L
Sbjct: 518 VVTWTSRIGAYSRRKQYNRCL 538



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 85/179 (47%), Gaps = 4/179 (2%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +L   PT+ +  +L+S  + +       +++  + ++G+K D  +  +++    + G+ +
Sbjct: 406 RLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFE 465

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
            M EV   M       ++ TY  LI+   +AG  A+    +  + ++N+ PD V + + I
Sbjct: 466 KMEEVLTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRI 525

Query: 205 TACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
            A  +    +R  +V  EM +A  +P   D  T   L+ AC+N  Q+     V + +HK
Sbjct: 526 GAYSRRKQYNRCLEVFEEMIDAGCYP---DGGTAKVLLSACSNGDQIQEVTTVIRTMHK 581



 Score = 39.7 bits (91), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 81/208 (38%), Gaps = 13/208 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQKAIKEA 80
           SYN ++    R G   +   + E M+R G+    K +      ++R   V K ++ + + 
Sbjct: 380 SYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQ- 438

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               K    P     N ++++       E   +VL  +++    AD   Y  LI    ++
Sbjct: 439 --MHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRA 496

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G    M E+F  +    + P+V T+ + I   ++  Q  +    +  M      PD    
Sbjct: 497 GFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTA 556

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVH 228
             L++AC     +     V+  M+ ++ 
Sbjct: 557 KVLLSACSNGDQIQEVTTVIRTMHKDMR 584


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 169/383 (44%), Gaps = 5/383 (1%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           N   S+  + EA   F+ +P+  + ++N+L+     +   + A Q   L  E     D  
Sbjct: 236 NAVLSRLPLDEAIELFQELPHKNVCSYNILLKALCDAGRVKDARQ---LFDEMASAPDVV 292

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            Y  LI      G+++   ++  EMV  G+EPN   Y +++      G ++ A      M
Sbjct: 293 TYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDM 352

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
             + V  D  ++  +++     G +  A     EM  +   +  D +T   ++     A 
Sbjct: 353 VQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRK--GLATDGVTYTTMINGLCRAV 410

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           +++ A ++ + +    +      YT+ I+   + G    A  +++ M ++GV P+ V  +
Sbjct: 411 ELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYT 470

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           AL D     G V+AA E+L E  N+G+ +   +Y+SL+     A   ++A+     M + 
Sbjct: 471 ALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTA 530

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            LKP V T   LI ALC    L +   +L +M   G+ P  +TY++L+        VE G
Sbjct: 531 CLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGG 590

Query: 429 LMLLSQAKEDGVIPNLVMFKCII 451
             LL    E  + PN   +  ++
Sbjct: 591 KKLLDWMLEKNIHPNAATYNSLM 613



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 193/412 (46%), Gaps = 9/412 (2%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS 93
           L  +G IS+ + ++EDM +RK +LD + +Y       C     +  A R+F  +    L+
Sbjct: 336 LCDKGWISDALRVVEDMVQRKVILD-EALYTTVLSGFCNKGDLVS-ARRWFDEMQRKGLA 393

Query: 94  T----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           T    +  +++    + + E A ++L+ +    L  D   YT LI    K GK+   F++
Sbjct: 394 TDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQM 453

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            + MV  G+ PNV TY AL DG  K G V  A      M +K ++ +   +N+LI    +
Sbjct: 454 HNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCK 513

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +++A   +A+M+     + PD  T   L+ A   +G +DRA  + + +    IK T 
Sbjct: 514 AGYLEQAMRTMADMDTAC--LKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTI 571

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y + +N    +G  E    + D M +K + P+    ++L+        +++  EI + 
Sbjct: 572 VTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKG 631

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            +++ +     +Y+ L+     A+N ++AL  ++ M     + T ++ +ALI  L    +
Sbjct: 632 MRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKK 691

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             +  E+  DM+  GL   +  Y   +     +D++E  L L  +  E  ++
Sbjct: 692 FVEARELFHDMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDELVEASIV 743



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 182/434 (41%), Gaps = 48/434 (11%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVPNPTL 92
           G +   + LL++M   G+     VY +    +C  +  I +A R        K++ +  L
Sbjct: 305 GELENAVKLLDEMVAGGVEPNATVYTSVVALLC-DKGWISDALRVVEDMVQRKVILDEAL 363

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
             +  ++S   +  D   A +    +Q  GL  D   YTT+I    ++ +++   ++  E
Sbjct: 364 --YTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQE 421

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M    ++ +  TY  LIDG  K G++A+AF  +  M  + V P+ V + AL     + G 
Sbjct: 422 MWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGD 481

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V  A ++L EM+ +           G  + AC                           Y
Sbjct: 482 VQAANELLHEMSNK-----------GLELNAC--------------------------TY 504

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              IN   + G  E A     DM    + PD    + LID    +G ++ A  +LQE  +
Sbjct: 505 NSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLD 564

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           +GI   I++Y+ LM     +   +   +L + M    + P  +T N+L+   C  + +  
Sbjct: 565 KGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKS 624

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           T E+   M+S  + PN  TY+IL+    +  +++  L    +  + G       +  +I 
Sbjct: 625 TTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIR 684

Query: 453 MCS--RRYEKARTL 464
           + +  +++ +AR L
Sbjct: 685 LLNKKKKFVEAREL 698



 Score = 45.4 bits (106), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 85/198 (42%), Gaps = 12/198 (6%)

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + + +Y I  +PE    A N        + A  ++ ++  K V    + L AL D    A
Sbjct: 221 RRLRQYGISPSPE----ACNAVLSRLPLDEAIELFQELPHKNVCSYNILLKALCD----A 272

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+V+ A ++  E  +   +  +++Y  L+         + A++L + M +  ++P  +  
Sbjct: 273 GRVKDARQLFDEMAS---APDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVY 329

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
            +++  LCD   +   + V+ DM    +  +   Y+ +L     K D+        + + 
Sbjct: 330 TSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQR 389

Query: 438 DGVIPNLVMFKCII-GMC 454
            G+  + V +  +I G+C
Sbjct: 390 KGLATDGVTYTTMINGLC 407


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 182/409 (44%), Gaps = 15/409 (3%)

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           +++A K A R  + V +P L TFN+++S    +     A  V + ++  GL      Y T
Sbjct: 169 AERAFKAALR--RRV-SPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNT 225

Query: 133 LITTCAKSGKVDAMFEV---FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +I    K G+   M+ V     EMV AGI PN  T+  L++G  K    A A   +  M+
Sbjct: 226 IIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMK 285

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            + +    V ++AL+      G V+    ++ EM      + P+  T+ +++      G 
Sbjct: 286 QQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKD--LGLVPNLATLNSVLNGFCKKGM 343

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +  A      + + N+K     YTI ++   +    + A +V + M+ KGV P+    + 
Sbjct: 344 MTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNC 403

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI      G   +   +L E + +G+   I++Y+ L+GA       +KA++L + M  + 
Sbjct: 404 LIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVG 463

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           L+P   T N +I   C+   +    E+ + M+      N +TY++ +    R   +E   
Sbjct: 464 LEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETN 523

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQ 477
            LL++  E G++PN V +  I  GM  + Y         V  F    PQ
Sbjct: 524 ELLNEMLEKGLVPNGVTYDTIKEGMMEKGY------TPDVRGFTCSEPQ 566



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 126/270 (46%), Gaps = 13/270 (4%)

Query: 194 KPDRVVFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           +P     N L++A   +  VD   RAF       A    V PD  T   ++      GQ+
Sbjct: 147 RPSAFSVNRLLSALVAAERVDLAERAFKA-----ALRRRVSPDLFTFNIVISGLCKTGQL 201

Query: 251 DRAREVYKMIHKYNIKGTPEVY-TIAINCC--SQTGDWEFACSVYDDMTKKGVIPDEVFL 307
            +A +V K I  + +  +   Y TI    C   + G      ++  +M + G+ P+EV  
Sbjct: 202 RKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTF 261

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMK 366
           + L++         AA  + +E K QGI+  +++YS+L+ G CS  K  ++ ++L + MK
Sbjct: 262 NVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGK-VEEGVKLVDEMK 320

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
            + L P ++T+N+++   C    +      +  M+   + PN +TY+IL+    R D ++
Sbjct: 321 DLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMK 380

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
             L +       GV PN  ++ C+I   +R
Sbjct: 381 DALAVKEAMSGKGVRPNARIYNCLIAGFTR 410



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 177/441 (40%), Gaps = 75/441 (17%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---- 76
           VS  L ++N +I    + G++ +  D+ +D+   GL      Y+      CK  +A    
Sbjct: 181 VSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMY 240

Query: 77  -----IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
                +KE     +   +P   TFN+L++      ++  A +V   +++ G+ A    Y+
Sbjct: 241 HVDALLKE---MVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYS 297

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            L+      GKV+   ++  EM + G+ PN+ T  ++++G  K G +  A G    M  K
Sbjct: 298 ALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQK 357

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
           NVKP+ V +  L+    +   +  A  V   M+ +   V P+      L+      G   
Sbjct: 358 NVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGK--GVRPNARIYNCLIAGFTRNGD-- 413

Query: 252 RAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
             R V  ++ +  +KG       Y + I      G+   A  + D+M   G+ P  +  +
Sbjct: 414 -WRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYN 472

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            +I+     G +++A+EI                                      M+  
Sbjct: 473 TIINGYCEKGNIKSAYEI-----------------------------------RTRMEKG 497

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
           K +  V T N  I  LC   ++ +T E+L++M   GL PN +TY          D ++ G
Sbjct: 498 KKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTY----------DTIKEG 547

Query: 429 LMLLSQAKEDGVIPNLVMFKC 449
           +M      E G  P++  F C
Sbjct: 548 MM------EKGYTPDVRGFTC 562



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/365 (19%), Positives = 152/365 (41%), Gaps = 4/365 (1%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT--LITTCAKSGKVDAMFEVFHEM 153
           ++L+   AS+     +++   L  +A  +     ++   L++    + +VD     F   
Sbjct: 117 DLLVLALASASQPLASYEAFLLAGDAHPRHRPSAFSVNRLLSALVAAERVDLAERAFKAA 176

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           +   + P++ T+  +I G  K GQ+ KA      +R+  + P  V +N +I    + G  
Sbjct: 177 LRRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRA 236

Query: 214 DRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
            R + V A +   V   + P+ +T   L+           A  V++ + +  I  +   Y
Sbjct: 237 GRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTY 296

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           +  +      G  E    + D+M   G++P+   L+++++     G +  A   +   + 
Sbjct: 297 SALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQ 356

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           + +   +++Y+ L+         + AL + E M    ++P     N LI           
Sbjct: 357 KNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRS 416

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
              +L +M+  G+  + +TY++L+ A   K +V   + LL +    G+ P  + +  II 
Sbjct: 417 VSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIIN 476

Query: 452 GMCSR 456
           G C +
Sbjct: 477 GYCEK 481


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 174/407 (42%), Gaps = 11/407 (2%)

Query: 68  FNVCKSQKAIKEAFRFFKLVP-------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
            NV   +     AF+F+  V         P L T+N+++         + A    R +  
Sbjct: 167 LNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPL 226

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
                D   Y+TL+    K  +VD    +  EM   G  PN  T+  LID  +K G +++
Sbjct: 227 KNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSR 286

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A      M  K   P+ V +N LI      G +D+A  +L +M +      P+ +T G +
Sbjct: 287 AAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS--KCVPNQVTYGTI 344

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           +       + +    +   + +   K    +Y+  I+   + G  E A  ++ +M +KG 
Sbjct: 345 INGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGC 404

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            P+ V   A ID      K + A +ILQE  ++G      +YSSLM       + QKA+ 
Sbjct: 405 KPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAIL 464

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           +++ M S  ++  V   + L+  LC+  +L + + V + M   GL P+ + YS ++    
Sbjct: 465 VWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLC 524

Query: 421 RKDDVEVGLMLLS--QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
               V+ GL L    Q +E    P++V +  +     R+    R ++
Sbjct: 525 DVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAID 571



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 174/418 (41%), Gaps = 43/418 (10%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +TF  L+   A+S++     QVL  ++  G      ++  +   C K+         FH 
Sbjct: 90  ATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHR 149

Query: 153 MVN-AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM---RSKNVKPDRVVFNALITACG 208
           M N    +  V ++ ++++   + G  + AF  Y  +    SK  +P+ + +N +I A  
Sbjct: 150 MANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALC 209

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +DRA D   EM   +   +PD  T   LM       +VD A  +   +        
Sbjct: 210 KLGQIDRAVDTFREM--PLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPN 267

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P  + + I+  S+ GD   A  + D+M  KG +P+EV  + LI      GK++ A  +L+
Sbjct: 268 PVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLE 327

Query: 329 E------AKNQGISVGIIS-----------------------------YSSLMGACSNAK 353
           +        NQ     II+                             YSSL+       
Sbjct: 328 KMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEG 387

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             + A+ L++ M     KP V    A I  LC  ++  +  ++L +M S G  PN  TYS
Sbjct: 388 KSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYS 447

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 469
            L+    +K D +  +++  +     +  N+V    ++ G+C S R  +A T+  H+L
Sbjct: 448 SLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHML 505



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 140/334 (41%), Gaps = 36/334 (10%)

Query: 240 LMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM--- 295
           + KAC  A     A   + +M +  + K T + +   +N   Q GD+ +A   Y  +   
Sbjct: 130 IFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGA 189

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             KG  P+ +  + +I      G+++ A +  +E   +  +  + +YS+LM      +  
Sbjct: 190 NSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRV 249

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +A+ L + M++    P   T N LI AL     L +  +++ +M   G  PN +TY+ L
Sbjct: 250 DEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTL 309

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY------------EKAR 462
           +     K  ++  L LL +      +PN V +  II G+  +R             E+ +
Sbjct: 310 IHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQ 369

Query: 463 TLNEHVLS------FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 516
             NE++ S      F  G+   EN     A+ +++E    G  P V V    +  L    
Sbjct: 370 KANEYIYSSLISGLFKEGKS--EN-----AVRLWKEMAEKGCKPNVVVYGAFIDGLCRDE 422

Query: 517 NADIRERLVENL---GVSADALKRSNLCSLIDGF 547
             D  E +++ +   G   +A   S   SL+ GF
Sbjct: 423 KPDEAEDILQEMLSKGFLPNAFTYS---SLMKGF 453



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 11/178 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAI---KEAFRFFKLVP 88
           L R  +  E  D+L++M  KG L     Y +    FF    SQKAI   KE     + + 
Sbjct: 418 LCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMS--QDMR 475

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +  +    +L  +C S +  E A  V   +   GLK D   Y+++I      G VD   +
Sbjct: 476 HNVVCCSVLLNGLCESGRLRE-ALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLK 534

Query: 149 VFHEMV--NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           +F+EM        P+V TY  L +   +   + +A      M  +   PD +  N  +
Sbjct: 535 LFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFL 592


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 174/407 (42%), Gaps = 11/407 (2%)

Query: 68  FNVCKSQKAIKEAFRFFKLVP-------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
            NV   +     AF+F+  V         P L T+N+++         + A    R +  
Sbjct: 143 LNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPL 202

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
                D   Y+TL+    K  +VD    +  EM   G  PN  T+  LID  +K G +++
Sbjct: 203 KNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSR 262

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
           A      M  K   P+ V +N LI      G +D+A  +L +M +      P+ +T G +
Sbjct: 263 AAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSS--KCVPNQVTYGTI 320

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           +       + +    +   + +   K    +Y+  I+   + G  E A  ++ +M +KG 
Sbjct: 321 INGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGC 380

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            P+ V   A ID      K + A +ILQE  ++G      +YSSLM       + QKA+ 
Sbjct: 381 KPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAIL 440

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           +++ M S  ++  V   + L+  LC+  +L + + V + M   GL P+ + YS ++    
Sbjct: 441 VWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLC 500

Query: 421 RKDDVEVGLMLLS--QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
               V+ GL L    Q +E    P++V +  +     R+    R ++
Sbjct: 501 DVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAID 547



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 174/418 (41%), Gaps = 43/418 (10%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           +TF  L+   A+S++     QVL  ++  G      ++  +   C K+         FH 
Sbjct: 66  ATFYRLIENYATSREFHFIHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHR 125

Query: 153 MVN-AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM---RSKNVKPDRVVFNALITACG 208
           M N    +  V ++ ++++   + G  + AF  Y  +    SK  +P+ + +N +I A  
Sbjct: 126 MANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALC 185

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +DRA D   EM   +   +PD  T   LM       +VD A  +   +        
Sbjct: 186 KLGQIDRAVDTFREM--PLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPN 243

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P  + + I+  S+ GD   A  + D+M  KG +P+EV  + LI      GK++ A  +L+
Sbjct: 244 PVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLE 303

Query: 329 E------AKNQGISVGIIS-----------------------------YSSLMGACSNAK 353
           +        NQ     II+                             YSSL+       
Sbjct: 304 KMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEG 363

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             + A+ L++ M     KP V    A I  LC  ++  +  ++L +M S G  PN  TYS
Sbjct: 364 KSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTYS 423

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 469
            L+    +K D +  +++  +     +  N+V    ++ G+C S R  +A T+  H+L
Sbjct: 424 SLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWTHML 481



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 140/334 (41%), Gaps = 36/334 (10%)

Query: 240 LMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM--- 295
           + KAC  A     A   + +M +  + K T + +   +N   Q GD+ +A   Y  +   
Sbjct: 106 IFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGA 165

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             KG  P+ +  + +I      G+++ A +  +E   +  +  + +YS+LM      +  
Sbjct: 166 NSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRV 225

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            +A+ L + M++    P   T N LI AL     L +  +++ +M   G  PN +TY+ L
Sbjct: 226 DEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTL 285

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY------------EKAR 462
           +     K  ++  L LL +      +PN V +  II G+  +R             E+ +
Sbjct: 286 IHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQ 345

Query: 463 TLNEHVLS------FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 516
             NE++ S      F  G+   EN     A+ +++E    G  P V V    +  L    
Sbjct: 346 KANEYIYSSLISGLFKEGKS--EN-----AVRLWKEMAEKGCKPNVVVYGAFIDGLCRDE 398

Query: 517 NADIRERLVENL---GVSADALKRSNLCSLIDGF 547
             D  E +++ +   G   +A   S   SL+ GF
Sbjct: 399 KPDEAEDILQEMLSKGFLPNAFTYS---SLMKGF 429



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 11/178 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAI---KEAFRFFKLVP 88
           L R  +  E  D+L++M  KG L     Y +    FF    SQKAI   KE     + + 
Sbjct: 394 LCRDEKPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMS--QDMR 451

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +  +    +L  +C S +  E A  V   +   GLK D   Y+++I      G VD   +
Sbjct: 452 HNVVCCSVLLNGLCESGRLRE-ALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLK 510

Query: 149 VFHEMV--NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           +F+EM        P+V TY  L +   +   + +A      M  +   PD +  N  +
Sbjct: 511 LFYEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFL 568


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 168/390 (43%), Gaps = 7/390 (1%)

Query: 67  FFNVCKSQK---AIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
             +VC   K    + E + F +     P+     M++     SK  +    + + +   G
Sbjct: 2   LLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLG 61

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
            + D  +Y   +    K G +    E+F  M    + PNV  Y  LI G  K  ++  A 
Sbjct: 62  FRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAE 121

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
             +G M  +N+ P+RV FN LI    ++G VD A  +   M  E   V+P  IT  +L+ 
Sbjct: 122 KLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKE--KVEPSIITFNSLLS 179

Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC-SVYDDMTKKGVI 301
               A +++ AR +   I           Y+I  +   ++ D   A   +Y +   KGV 
Sbjct: 180 GLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVK 239

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
            D    S L++     GKVE A E+L+     G+  G + Y++++       +  +A+  
Sbjct: 240 IDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILT 299

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
            E M+S  L+P     N++I   C+   + K  E +  M   G+ P+  TY+IL+    R
Sbjct: 300 IEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGR 359

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
                    +L + +E+G  PN++ +  +I
Sbjct: 360 LCVFSRCFQILEEMEENGEKPNVISYGSLI 389



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 182/414 (43%), Gaps = 51/414 (12%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           G +   I  +E ME +GL      +++     C+ Q   K      K+V     P++ T+
Sbjct: 291 GDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETY 350

Query: 96  NMLMS----VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           N+L+     +C  S+     FQ+L  ++E G K +   Y +LI    K GK+     V  
Sbjct: 351 NILIDGYGRLCVFSR----CFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLR 406

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +MV  G+ PN + Y  LIDG    G++ +A   +  M    +    V +N+LI    + G
Sbjct: 407 DMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMG 466

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +  A ++   + +  H   PD IT  +L+   +NAG   +  E+Y+ + K  +K T   
Sbjct: 467 KLKEAEEMFFLITSTGHC--PDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINT 524

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   I+ CS+ G  +   +++++M +  + PD V  +A+I      G V           
Sbjct: 525 FHPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHV----------- 572

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
                                   QKA  L + M  + ++P   T N+LI       +L 
Sbjct: 573 ------------------------QKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLS 608

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNL 444
           +T +++ DMK+ GL P   TYS+L+   C+ K D     +   +  E+G +PN+
Sbjct: 609 ETKDLVDDMKAKGLIPEADTYSLLIQGHCDLK-DFNGAYVWYREMLENGFLPNV 661



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/431 (22%), Positives = 190/431 (44%), Gaps = 19/431 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVP 88
           L+   +    +DL ++M   G    DK+ + R          +K A   F      K+VP
Sbjct: 41  LVESKKFDNVLDLFKEMVGLGFRP-DKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVP 99

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N  +  +N+L+      K    A ++   +    L  +   + TLI    K+G+VD    
Sbjct: 100 N--VFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIG 157

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD----RVVFNALI 204
           +   M    +EP++ T+ +L+ G  KA ++ +A      ++     PD     ++F+ L+
Sbjct: 158 LRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLL 217

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            +   +GA   A D+  E  A    V  D+ T   L+      G+V++A EV K + ++ 
Sbjct: 218 KSDDGAGA---ALDLYRE--AIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHG 272

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +     +Y   +N   Q GD + A    + M  +G+ P+ +  +++ID       ++ A 
Sbjct: 273 LVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAE 332

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
           E +++   +GI+  + +Y+ L+        + +  ++ E M+    KP V +  +LI  L
Sbjct: 333 EWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCL 392

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   ++ +   VL DM   G+ PN   Y++L+        +   L    +  ++G+   +
Sbjct: 393 CKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATI 452

Query: 445 VMFKCII-GMC 454
           V +  +I G+C
Sbjct: 453 VTYNSLIKGLC 463



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 150/323 (46%), Gaps = 30/323 (9%)

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           ++ CS++        +YD M ++G +P   ++  +++    + K +   ++ +E    G 
Sbjct: 3   LSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGF 62

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
               + Y   M A     + + A+EL+E MK  K+ P V   N LI  LC   ++    +
Sbjct: 63  RPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEK 122

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
           +  +M    L PN +T++ L+    +  +V+V + L  + K++ V P+++ F  ++ G+C
Sbjct: 123 LFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLC 182

Query: 455 -SRRYEKAR-TLNEHVLSFNSGRPQ------------IENKWTSLALMVYREAIVAGTIP 500
            +RR E+AR  LNE  +  N   P               +     AL +YREAI  G   
Sbjct: 183 KARRIEEARCMLNE--IKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKI 240

Query: 501 TVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPR 553
                S +L  L    ++    ++ + LVE+  V  + +      ++++G+   G+ D R
Sbjct: 241 DNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYN----TIVNGYCQIGDMD-R 295

Query: 554 AFSLLEEAASFGIVP-CVSFKEI 575
           A   +E+  S G+ P C++F  +
Sbjct: 296 AILTIEQMESRGLRPNCIAFNSV 318



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 163/420 (38%), Gaps = 56/420 (13%)

Query: 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           L+  C+++   ++    Y  MR +   P       ++ +  +S   D   D+  EM    
Sbjct: 2   LLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVG-- 59

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
               PD +  G  M A    G +  A E+++ + +  +     VY + I    +      
Sbjct: 60  LGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRD 119

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A  ++ +M+ + ++P+ V  + LID    AG+V+ A                        
Sbjct: 120 AEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVA------------------------ 155

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                      + L E MK  K++P++ T N+L++ LC   ++ +   +L+++K  G  P
Sbjct: 156 -----------IGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVP 204

Query: 408 NTITYSILLVACERKDD-VEVGLMLLSQAKEDGV-IPNLVMFKCIIGMCSR-RYEKA--- 461
           +  TYSI+     + DD     L L  +A   GV I N      + G+C   + EKA   
Sbjct: 205 DGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEV 264

Query: 462 -RTLNEHVL--------SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
            ++L EH L        +  +G  QI +     A++   +    G  P     + V+   
Sbjct: 265 LKSLVEHGLVPGEVIYNTIVNGYCQIGD--MDRAILTIEQMESRGLRPNCIAFNSVIDKF 322

Query: 513 QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLEEAASFGIVPCV 570
                 D  E  V+ +     A        LIDG+G      R F +LEE    G  P V
Sbjct: 323 CEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNV 382


>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
 gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Cucumis sativus]
          Length = 609

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 170/356 (47%), Gaps = 20/356 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK---EAFRFFKLVPN 89
           N     G + E +++ + ME  G     K   + F  + K    I+   E+ +  +L+  
Sbjct: 135 NAFSESGNVKEAMEIFQKMEESGC----KPTTSTFNTLIKGYGIIRKPEESMKLLELMTR 190

Query: 90  -----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P   T+N+L+      K  + A+ V+  +  +G++ D   Y TL    A+ G+ +
Sbjct: 191 TTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETN 250

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  +M+N  + PN  T G ++ G  + G +A+A      MR   + P+ V+FN+LI
Sbjct: 251 KAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLI 310

Query: 205 TA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
                 G S  VD+A  ++ E       V PD IT   +M   ++AG++D+ +E++  + 
Sbjct: 311 KGFLDIGDSDGVDKALTMMEESG-----VKPDVITFSTIMNGWSSAGRMDKCQEIFDDML 365

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K  I+    V++I      + G+   A S+ + M+K GV P+ V  + +I     AGK+E
Sbjct: 366 KSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKME 425

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
            A+++ +   +  +S  + ++ +L+     AK   +A E+ + M+ + + P  ST+
Sbjct: 426 KAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTL 481



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 168/387 (43%), Gaps = 10/387 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L RQ R      LL +ME  G+   D +      N       +KEA   F+ +      P
Sbjct: 102 LTRQKRFKAISGLLSEMEETGI-KPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKP 160

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLV-QEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           T STFN L+      +  E + ++L L+ +   LK + + Y  L+    K   +   + V
Sbjct: 161 TTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNV 220

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            H+M+ +G++P+V TY  L    A+ G+  KA      M +K V P+      ++    +
Sbjct: 221 VHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCE 280

Query: 210 SGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G +  A  V+  M +  +HP   + +   +L+K   + G  D   +   M+ +  +K  
Sbjct: 281 QGNLAEALRVVYRMRDLGIHP---NLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPD 337

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              ++  +N  S  G  +    ++DDM K G+ PD    S L      AG+   A  +L 
Sbjct: 338 VITFSTIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLN 397

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
                G+   ++ +++++     A   +KA +++EHM  + + P + T   LI    +  
Sbjct: 398 FMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAK 457

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSIL 415
           Q  +  E+L  M+ + + P   T  ++
Sbjct: 458 QPWRAEEILQMMEEMNVVPENSTLKLV 484



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 179/399 (44%), Gaps = 19/399 (4%)

Query: 64  HARFFNVCKSQKAIKEA-FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
             +  N+   +   +EA F F  LV     PT  T+  L++     K  +    +L  ++
Sbjct: 60  RTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLLSEME 119

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           E G+K D  L   +I   ++SG V    E+F +M  +G +P   T+  LI G     +  
Sbjct: 120 ETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPE 179

Query: 180 KAFGAYGIM-RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238
           ++     +M R+ N+KP+   +N L+ A  +  ++  A++V+ +M A    V PD +T  
Sbjct: 180 ESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLAS--GVQPDVVTYN 237

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI---NCCSQTGDWEFACSVYDDM 295
            L +A A  G+ ++A  +  ++   N K  P   T  I     C Q G+   A  V   M
Sbjct: 238 TLARAYAQDGETNKAESI--IVDMLNKKVNPNERTCGIIVGGYCEQ-GNLAEALRVVYRM 294

Query: 296 TKKGVIPDEVFLSALIDF---AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
              G+ P+ V  ++LI      G +  V+ A  +++E+   G+   +I++S++M   S+A
Sbjct: 295 RDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEES---GVKPDVITFSTIMNGWSSA 351

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
               K  E+++ M    ++P +   + L        +  K   +L+ M   G+ PN + +
Sbjct: 352 GRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIF 411

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + ++        +E    +     +  V PNL  F+ +I
Sbjct: 412 TTIISGWCTAGKMEKAWKVFEHMCDMDVSPNLKTFETLI 450



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 128/266 (48%), Gaps = 11/266 (4%)

Query: 18  HANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H   A  V   + +YN L R     G  ++   ++ DM  K +   ++         C+ 
Sbjct: 222 HQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQ 281

Query: 74  ---QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
               +A++  +R   L  +P L  FN L+       DS+G  + L +++E+G+K D   +
Sbjct: 282 GNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTMMEESGVKPDVITF 341

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           +T++   + +G++D   E+F +M+ +GIEP++H +  L  G  +AG+  KA      M  
Sbjct: 342 STIMNGWSSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSK 401

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
             V+P+ V+F  +I+    +G +++A+ V   M      V P+  T   L+     A Q 
Sbjct: 402 YGVRPNVVIFTTIISGWCTAGKMEKAWKVFEHMCD--MDVSPNLKTFETLIWGYGEAKQP 459

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAI 276
            RA E+ +M+ + N+   PE  T+ +
Sbjct: 460 WRAEEILQMMEEMNV--VPENSTLKL 483



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 167/386 (43%), Gaps = 15/386 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T+ +   LM++       + A  +   + E G +     YT L+    +  +  A+  + 
Sbjct: 56  TVRSRTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGLL 115

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            EM   GI+P+     A+I+  +++G V +A   +  M     KP    FN LI   G  
Sbjct: 116 SEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGII 175

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-P 269
              + +  +L E+      + P++ T   L+ A      +   +E + ++H+    G  P
Sbjct: 176 RKPEESMKLL-ELMTRTTNLKPNNRTYNILVGALCKKKSI---KEAWNVVHQMLASGVQP 231

Query: 270 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
           +V  Y       +Q G+   A S+  DM  K V P+E     ++      G +  A  ++
Sbjct: 232 DVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVV 291

Query: 328 QEAKNQGISVGIISYSSLMGA---CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
              ++ GI   ++ ++SL+       ++    KAL +   M+   +KP V T + ++   
Sbjct: 292 YRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKALTM---MEESGVKPDVITFSTIMNGW 348

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
               ++ K  E+  DM   G+ P+   +SIL     R  +      LL+   + GV PN+
Sbjct: 349 SSAGRMDKCQEIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNV 408

Query: 445 VMFKCII-GMCSR-RYEKARTLNEHV 468
           V+F  II G C+  + EKA  + EH+
Sbjct: 409 VIFTTIISGWCTAGKMEKAWKVFEHM 434



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 93/185 (50%), Gaps = 1/185 (0%)

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           GT    T  +N   + G  + A  +++ + ++G  P  V  +AL+       + +A   +
Sbjct: 55  GTVRSRTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVTYTALVAALTRQKRFKAISGL 114

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L E +  GI    I  ++++ A S + N ++A+E+++ M+    KPT ST N LI     
Sbjct: 115 LSEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKMEESGCKPTTSTFNTLIKGYGI 174

Query: 387 GDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445
             +  ++M++L  M ++  L PN  TY+IL+ A  +K  ++    ++ Q    GV P++V
Sbjct: 175 IRKPEESMKLLELMTRTTNLKPNNRTYNILVGALCKKKSIKEAWNVVHQMLASGVQPDVV 234

Query: 446 MFKCI 450
            +  +
Sbjct: 235 TYNTL 239



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 7/161 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  F++L      + +   A  +L  + + G++ +  ++TT+I+    +GK++  ++V
Sbjct: 371 PDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGWCTAGKMEKAWKV 430

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M +  + PN+ T+  LI G  +A Q  +A     +M   NV P+      +  A   
Sbjct: 431 FEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPENSTLKLVSEAWRS 490

Query: 210 SGAVDRAFDVLAEMN-------AEVHPVDPDHITIGALMKA 243
            G V+ A     E N         +H  +  H +   L+K+
Sbjct: 491 IGMVNDAKAERTEENEIPWRNSERIHEEEGPHASYSNLLKS 531


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 154/352 (43%), Gaps = 13/352 (3%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E    V R ++E G+      Y  L+     S  +++  +VF  M    I P+  TY  +
Sbjct: 202 EELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIM 261

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I G  KAG++ KA   +  M  KNVKPD++ +  LI AC      D    +  EM     
Sbjct: 262 IKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGL 321

Query: 229 PVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTG 283
            + P    + IG L K         +  E Y +    N KG      +YT  I+  S+ G
Sbjct: 322 EIPPHSYSLVIGGLCKQ-------RKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNG 374

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
             E A  +++ M  +G  PD V  S L++    +G+++   E+    +N+G+++  + Y+
Sbjct: 375 SMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYA 434

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           SL+     A   + A  L+E M            NA+I AL    ++ + + +   M+  
Sbjct: 435 SLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEE 494

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMC 454
           G      T++IL+    ++   E  +    +  + G+ P +  F+ + IG+C
Sbjct: 495 GCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLC 546



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 155/336 (46%), Gaps = 4/336 (1%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K+VP+    T+N+++     +   + A +  R ++   +K D   Y TLI  C      D
Sbjct: 250 KIVPDTV--TYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFD 307

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               ++ EM   G+E   H+Y  +I G  K  +  +A+  +  M  K  + +  ++ ALI
Sbjct: 308 TCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALI 367

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            +  ++G+++ A  +   M  E    +PD +T   L+     +G++D   E++       
Sbjct: 368 DSYSKNGSMEEAMRLFERMKNE--GFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKG 425

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +      Y   I+   + G  E A +++++M++KG   D    +A+ID     GK++ A 
Sbjct: 426 VAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQAL 485

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +    + +G    + +++ L+         ++A++ ++ M    + PTV++  AL   L
Sbjct: 486 ALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 545

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           C   ++ +  ++L D+  +G+ P T    ++   C+
Sbjct: 546 CLCGKVARACKILDDLAPMGIIPETAFEDMINTLCK 581



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 148/347 (42%), Gaps = 18/347 (5%)

Query: 44  CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP----TLSTFNMLM 99
           C+ L  +ME +GL      Y      +CK +K + EA+  F+ +        ++ +  L+
Sbjct: 309 CLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCM-EAYAVFETMNQKGCRANVAIYTALI 367

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
              + +   E A ++   ++  G + D   Y+ L+    KSG++D   E+F    N G+ 
Sbjct: 368 DSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVA 427

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
            N   Y +LIDG  KAG++  A   +  M  K    D   +NA+I A  + G +D+A  +
Sbjct: 428 INAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALAL 487

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINC 278
              M  E    D    T   L+       + + A + + KMI K           +AI  
Sbjct: 488 FGRMEEE--GCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 545

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
           C   G    AC + DD+   G+IP+  F   +I+    A +++ A ++     ++G  + 
Sbjct: 546 C-LCGKVARACKILDDLAPMGIIPETAF-EDMINTLCKAQRIKEACKLADGIVDRGREIP 603

Query: 339 IISYSSLMGACSNAKNWQKALEL--------YEHMKSIKLKPTVSTM 377
               + L+ A   A N    ++L        Y+ M SIK +    T+
Sbjct: 604 GRIRTVLINALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTL 650



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 114/270 (42%), Gaps = 4/270 (1%)

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N+LI + G  G V+    V   M    + +DP   T   L+    N+  ++ A +V++++
Sbjct: 189 NSLIKSFGNLGLVEELLWVWRRMKE--NGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVM 246

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               I      Y I I    + G  + A   + DM  K V PD++    LI         
Sbjct: 247 DGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDF 306

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           +    +  E + +G+ +   SYS ++G     +   +A  ++E M     +  V+   AL
Sbjct: 307 DTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTAL 366

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I +      + + M +   MK+ G  P+ +TYS+L+    +   ++ G+ L    +  GV
Sbjct: 367 IDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGV 426

Query: 441 IPNLVMFKCIIGMCSR--RYEKARTLNEHV 468
             N + +  +I    +  R E A  L E +
Sbjct: 427 AINAMFYASLIDGLGKAGRIEDAENLFEEM 456



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V+ ++  +G++  E   ++LI   G+ G VE    + +  K  GI   + +Y+ L+    
Sbjct: 172 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 231

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
           N+   + A +++E M   K+ P   T N +I   C   +L K ME   DM+   + P+ I
Sbjct: 232 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 291

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGV-IPNLVMFKCIIGMCSRR 457
           TY  L+ AC  + D +  L L  + +E G+ IP       I G+C +R
Sbjct: 292 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQR 339


>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 642

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 169/364 (46%), Gaps = 3/364 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L+S       ++ A ++   +++  ++   K+YTTL+    K GKV+   ++
Sbjct: 231 PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDL 290

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM  AG  P V+TY  LI G  KAG+V +A+G Y  M    + PD V  N L+   G+
Sbjct: 291 FEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGK 350

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC-ANAGQVDRAREVYKMIHKYNIKGT 268
            G V+   +V +EM   +    P  ++   ++KA   +   V      +  +   ++  +
Sbjct: 351 VGRVEELTNVFSEMG--MWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPS 408

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+I I+   +T   E A  + ++M +KG  P      +LI+  G A + EAA E+ +
Sbjct: 409 EFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFK 468

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E K    +V    Y+ ++          +A++L+  MK+    P V   NAL++ +    
Sbjct: 469 ELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAG 528

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            + +   +L  M+  G   +  +++I+L    R       + +    K  G+ P+ V + 
Sbjct: 529 MINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYN 588

Query: 449 CIIG 452
            ++G
Sbjct: 589 TLLG 592



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 153/346 (44%), Gaps = 5/346 (1%)

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMV-NAGIEPNVHTYGALIDGCAKAGQVAKA 181
            + DC  Y TLI    ++     M+    E+V N  +  +      L+    +A  V+KA
Sbjct: 122 FQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKA 181

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +   + +  KP    +N++I    Q G  ++  +V  EM  E     PD IT  AL+
Sbjct: 182 LSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCF-PDTITYSALI 240

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            +    G+ D A  ++  +    ++ T ++YT  +    + G  E A  ++++M + G  
Sbjct: 241 SSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P     + LI   G AG+V+ A+   ++    G++  ++  ++LM         ++   +
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNV 360

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           +  M   +  PTV + N +I AL +    + +       MK+  + P+  TYSIL+    
Sbjct: 361 FSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYC 420

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTL 464
           + + VE  L+LL +  E G  P    +  +I     ++RYE A  L
Sbjct: 421 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANEL 466



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 180/405 (44%), Gaps = 13/405 (3%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFK 85
           + SY +L   GR    I L ++M+   +   +K+Y      +F V K +KA+       +
Sbjct: 240 ISSYEKL---GRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKR 296

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
              +PT+ T+  L+     +   + A+   + +   GL  D      L+    K G+V+ 
Sbjct: 297 AGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEE 356

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKA-GQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           +  VF EM      P V +Y  +I    ++   V++    +  M++ +V P    ++ LI
Sbjct: 357 LTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILI 416

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               ++  V++A  +L EM+ +  P  P      +L+ A   A + + A E++K + +  
Sbjct: 417 DGYCKTNRVEKALLLLEEMDEKGFP--PCPAAYCSLINALGKAKRYEAANELFKELKENF 474

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
              +  VY + I    + G    A  ++++M  +G  PD    +AL+     AG +  A 
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEAN 534

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +L++ +  G    I S++ ++   +     ++A+E++E +K   +KP   T N L+   
Sbjct: 535 SLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCF 594

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC----ERKDDV 425
                  +   ++ +MK  G   + ITYS +L A       KDDV
Sbjct: 595 AHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDV 639



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 107/463 (23%), Positives = 181/463 (39%), Gaps = 73/463 (15%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           +QF    GK  N+ HD S    +Y  LIR      C++                  AR +
Sbjct: 110 IQFFKWAGKRRNFQHDCS----TYMTLIR------CLE-----------------EARLY 142

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
              +  + I+E  R   +  +P +   + L+     +K    A  V    +    K    
Sbjct: 143 G--EMYRTIQEVVRNTYVSVSPAV--LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSS 198

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
            Y ++I    + G+ + + EV+ EM N G   P+  TY ALI    K G+   A   +  
Sbjct: 199 TYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDE 258

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M+   ++P   ++  L+    + G V++A D+  EM        P   T   L+K    A
Sbjct: 259 MKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA--GCSPTVYTYTELIKGLGKA 316

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G+VD A   YK                                   DM + G+ PD VFL
Sbjct: 317 GRVDEAYGFYK-----------------------------------DMLRDGLTPDVVFL 341

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMK 366
           + L++  G  G+VE    +  E      +  ++SY++++ A   +K +  +    ++ MK
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK 401

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +  + P+  T + LI   C  +++ K + +L +M   G  P    Y  L+ A  +    E
Sbjct: 402 ADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461

Query: 427 VGLMLLSQAKED-GVIPNLVMFKCI--IGMCSRRYEKARTLNE 466
               L  + KE+ G + + V    I   G C +  E     NE
Sbjct: 462 AANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNE 504



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 4/149 (2%)

Query: 324 FEILQEA-KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           +  +QE  +N  +SV     S L+ A   AK   KAL ++   K  K KPT ST N++I 
Sbjct: 146 YRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVIL 205

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            L    Q  K  EV ++M + G C P+TITYS L+ + E+    +  + L  + K++ + 
Sbjct: 206 MLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQ 265

Query: 442 PNLVMFKCIIGMCSR--RYEKARTLNEHV 468
           P   ++  ++G+  +  + EKA  L E +
Sbjct: 266 PTEKIYTTLLGIYFKVGKVEKALDLFEEM 294


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/471 (23%), Positives = 204/471 (43%), Gaps = 79/471 (16%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-- 85
           YN LI    ++G+  +   L++ M   GL+   + +++R   +C S K I EA R F+  
Sbjct: 220 YNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSGK-ILEASRIFRDM 278

Query: 86  ------LVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
                  +P+P + T+  MLM  C      E    V  + + A    + + Y   +    
Sbjct: 279 QIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANF-INLESYNIWLLGLI 337

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           ++GK+   + V  EM+  GIEP++++Y  ++DG  K G ++ A    G+M    + PD V
Sbjct: 338 RNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTV 397

Query: 199 VF-----------------------------------NALITACGQSGAVDRAFDVLAEM 223
            +                                   N L+ +  + G +  A ++L +M
Sbjct: 398 TYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKM 457

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------------------NI 265
           N + + VD   +T   ++ A  N GQ+D+A E+   +  +                   I
Sbjct: 458 NEKGYGVDT--VTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTI 515

Query: 266 KG---TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
            G   TP++  Y+  I+   + G  + A   + +M  KG+ PD       I      GK+
Sbjct: 516 SGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKI 575

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            +AF++L++ + +G +  + +Y+SL+    +     +   L + M+   + P V T N +
Sbjct: 576 SSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHM 635

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL----VACERKDDVEV 427
           +  LC+G ++     VL +M   G+ PN  ++ IL+     AC+ K   EV
Sbjct: 636 LNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACDFKASHEV 686



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 169/395 (42%), Gaps = 21/395 (5%)

Query: 67  FFNVCKSQ-KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           FFN   S  K+++  F        P++  +N+L+  C      E    + + +  A +  
Sbjct: 90  FFNKAISHFKSLRSNFP----EKQPSIYLYNVLLKSCIRENRVELVSWLYKDMVLARVSP 145

Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
           +   +  LI     SG ++   E+F +M   G EPN  T+G L+ G  +AG  +K     
Sbjct: 146 EAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELL 205

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           G MR+  + P+ V++N LI++  + G    A  ++ +M  +   + P   T  + + A  
Sbjct: 206 GQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMRED--GLVPHVETFNSRISALC 263

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPE----VYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            +G++  A  +++ +      G P      Y + +    + G  E A ++ D M +    
Sbjct: 264 GSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANF 323

Query: 302 PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQ 356
            +     ++L  LI      GK+  A+ +L+E    GI   I SY+ +M G C N     
Sbjct: 324 INLESYNIWLLGLI----RNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGM-LS 378

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
            A  L   M    + P   T + L+   C   ++ +   +L +M S    PNT T ++LL
Sbjct: 379 DARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLL 438

Query: 417 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
            +  ++  +     LL +  E G   + V    II
Sbjct: 439 HSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIII 473



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 154/366 (42%), Gaps = 38/366 (10%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR------ 82
           LHS   L ++GRISE  +LL+ M  KG   +D V      N   +   + +A        
Sbjct: 438 LHS---LWKEGRISEAENLLQKMNEKGY-GVDTVTCNIIINALCNNGQLDKAIEIVNGMW 493

Query: 83  -------------FFKLVPN--------PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQE 120
                        F  LV +        P L T++ ++S +C + +  +   + + ++ +
Sbjct: 494 THGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSK 553

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
            GL+ D  +Y T I +  + GK+ + F+V  +M   G    + TY +LI G     Q+ +
Sbjct: 554 -GLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFE 612

Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
            +G    MR K V PD   +N ++    + G ++ A  VL EM  +   + P+  +   L
Sbjct: 613 LYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQK--GISPNISSFRIL 670

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKG 299
           +KA   A     + EV+++    N+ G  E +YT+  N     G    A  +++    + 
Sbjct: 671 IKAFCKACDFKASHEVFEI--ALNVCGHKEALYTLMFNELLVGGKVAEAKELFETALDRS 728

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
                     LID      K+EAA ++L    ++G      S+  ++       N   A 
Sbjct: 729 FDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKHVAD 788

Query: 360 ELYEHM 365
           EL E M
Sbjct: 789 ELAERM 794



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 150/347 (43%), Gaps = 13/347 (3%)

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
            L+T  AKSG  +     F  + +   E  P+++ Y  L+  C +  +V      Y  M 
Sbjct: 80  NLVTVLAKSGFFNKAISHFKSLRSNFPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMV 139

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
              V P+   FN LI     SG ++ A ++  +M A     +P+  T G L++    AG 
Sbjct: 140 LARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPAR--GCEPNEFTFGILVRGYCRAGL 197

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLS 308
             +  E+   +    I     +Y   I+   + G    A  + D M + G++P  E F S
Sbjct: 198 ASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNS 257

Query: 309 ALIDFAGHAGKVEAA--FEILQEAKNQGI-SVGIISYS-SLMGACSNAKNWQKALELYEH 364
            +    G    +EA+  F  +Q  +  G+    +I+Y   LMG C      ++A  L + 
Sbjct: 258 RISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGM-LEEAKTLVDT 316

Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
           MK       + + N  +  L    +L +   VL +M  +G+ P+  +Y+I++    +   
Sbjct: 317 MKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGM 376

Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR--YEKARTLNEHV 468
           +    ML+     +G++P+ V +  ++ G CS+   +E    L+E +
Sbjct: 377 LSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMI 423


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 165/363 (45%), Gaps = 3/363 (0%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F++LM+    S     A Q  RLV++  L+        L     K       +  + E++
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           + G  P+V  +  L+    K  ++ +A   +G +  + ++P  V FN LI    +SG +D
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           + F +   M    + V PD  T   L+      GQ+D A +++  +    +      +T 
Sbjct: 278 QGFRLKRFMME--NRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTT 335

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            IN    TG  +    +Y  M +KGV PD +  + LI+     G +  A +++ E   +G
Sbjct: 336 LINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG 395

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +     +Y+ L+  C    + + ALE+ + M    ++       ALI+  C   Q+ +  
Sbjct: 396 LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAE 455

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
             L +M   G+ P+  TY++++    +K DV+ G  LL + + DG +P +V +  ++ G+
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515

Query: 454 CSR 456
           C +
Sbjct: 516 CKQ 518



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 188/428 (43%), Gaps = 18/428 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-- 94
           R+G+ S        +E +G    + V+     N         +A + F+LV    L    
Sbjct: 132 RKGKNSASSVFTSVLEARGTHQSNLVFSV-LMNAYTDSGYFSDAIQCFRLVRKHNLQIPF 190

Query: 95  ------FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
                 F+ LM +  +S     A+     + + G   D   +  L+    K  K++    
Sbjct: 191 HSCGYLFDRLMKLNLTSP----AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQL 246

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F E+   G+ P V ++  LI+G  K+G + + F     M    V PD   ++ LI    
Sbjct: 247 LFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLC 306

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +D A  +  EM      + P+ +T   L+      G+ D   E+Y+ + +  +K  
Sbjct: 307 KEGQLDDANKLFLEMCDR--GLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPD 364

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   IN   + GD   A  +  +MT++G+ PD+   + LID     G +E+A EI +
Sbjct: 365 VITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRK 424

Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           E   +GI +  +++++L+ G C   +  +    L E +++  +KP  +T   +I   C  
Sbjct: 425 EMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEA-GIKPDDATYTMVIHGFCKK 483

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             +    ++L +M+  G  P  +TY++LL    ++  ++   MLL      GV+P+ + +
Sbjct: 484 GDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITY 543

Query: 448 KCII-GMC 454
             ++ G C
Sbjct: 544 NILLEGHC 551



 Score = 40.4 bits (93), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/155 (21%), Positives = 72/155 (46%), Gaps = 9/155 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFK 85
           +Y  LI    ++G +   +++ ++M ++G+ ++D V + A     C+  + I+      +
Sbjct: 402 TYTMLIDGCCKEGDLESALEIRKEMVKEGI-ELDNVAFTALISGFCREGQVIEAERTLRE 460

Query: 86  LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P  +T+ M++       D +  F++L+ +Q  G       Y  L+    K G+
Sbjct: 461 MLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQ 520

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           +     +   M+N G+ P+  TY  L++G  K G 
Sbjct: 521 MKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGN 555


>gi|302757297|ref|XP_002962072.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
 gi|300170731|gb|EFJ37332.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
          Length = 413

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 156/359 (43%), Gaps = 9/359 (2%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           AF+VL  + +         Y +LIT   K G       +F  M    + P ++TY A++ 
Sbjct: 11  AFKVLEWLSDRKRGIHANAYNSLITGLMKDGDEADAIAIFERMKQDRVAPTLYTYTAVMR 70

Query: 171 GCAKAGQVAKAFGAYG-IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE--V 227
             A       A   +  ++   ++KPD  ++N ++ A G+   ++R       M  E  V
Sbjct: 71  ALAHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWERMRKEGCV 130

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             V     T   L+       Q D A + Y  ++   +K T  +Y   +  C+  G W  
Sbjct: 131 ENVG----TYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLV 186

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A + + +M + G  P  V  + L+   G AGK E   ++L   K  G++    + ++++ 
Sbjct: 187 ALTFFKEMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLN 246

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
               A+ + +A+  +  +KS  +K      N ++ A          + ++ +M+  G+ P
Sbjct: 247 GLIAAREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAP 306

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 464
           N +T+  LLVACE    VEV L L    K+   +PN  +   +I  C +   +++AR +
Sbjct: 307 NEVTFGPLLVACENAKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNI 365



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 171/405 (42%), Gaps = 27/405 (6%)

Query: 16  GKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           G HAN          +YN LI    + G  ++ I + E M++  +      Y A    + 
Sbjct: 24  GIHAN----------AYNSLITGLMKDGDEADAIAIFERMKQDRVAPTLYTYTAVMRALA 73

Query: 72  KSQKAIKEAFRFF-KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
             Q   + A R F +LV +    P ++ +N +++        E   Q    +++ G   +
Sbjct: 74  HVQ-GWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWERMRKEGCVEN 132

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y  L++T  ++ + D   + +  M + G++     Y  L+  CA  G+   A   + 
Sbjct: 133 VGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFK 192

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M     KP  V +N L+ A G++G  +   D+L  M A    V PD  T+ A++     
Sbjct: 193 EMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKAS--GVAPDFYTVNAVLNGLIA 250

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           A + DRA   +  +    +K   EVY + +  C ++ +WE A S+  +M + G+ P+EV 
Sbjct: 251 AREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVT 310

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
              L+    +A +VE A  + +  K +         +SL+ AC     WQ+A  +Y    
Sbjct: 311 FGPLLVACENAKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNIYRVS- 369

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
                P V   NALI A C   +     +V   M   G   N +T
Sbjct: 370 ----SPNVYVYNALIDAYCRSQKYHLAKKVDRRMIEEGCQRNNVT 410



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 42/211 (19%), Positives = 91/211 (43%), Gaps = 16/211 (7%)

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            AG+   AF++L+   ++   +   +Y+SL+       +   A+ ++E MK  ++ PT+ 
Sbjct: 4   RAGRRRTAFKVLEWLSDRKRGIHANAYNSLITGLMKDGDEADAIAIFERMKQDRVAPTLY 63

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           T  A++ AL           + S++   G L P+   Y+ +L A  R   +E  L    +
Sbjct: 64  TYTAVMRALAHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWER 123

Query: 435 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL--------- 485
            +++G + N+  +  ++    +  +    L+ +    + G    +  +  L         
Sbjct: 124 MRKEGCVENVGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGR 183

Query: 486 ---ALMVYREAIVAGTIPTV---EVVSKVLG 510
              AL  ++E + +G  PT+    V+ + LG
Sbjct: 184 WLVALTFFKEMLESGCKPTIVTYNVLMRALG 214


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 202/493 (40%), Gaps = 61/493 (12%)

Query: 21  YAHDVSEQLHSYNRLI------RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           + HD      SYNR++      R G  SE + L+ DMER G+       +     +    
Sbjct: 56  FRHDA----FSYNRILALLFRTRAGP-SEALRLVADMERDGVAGNISTINL----LVGMG 106

Query: 75  KAIKEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
               E  R  +L     L     T+  ++     S++    FQV   ++  G K D   Y
Sbjct: 107 GGGVEMERCLELASKWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAY 166

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             L+   AK+G VD  F+VF +M      P+ +TY  LI    KAG+ +K    +  M S
Sbjct: 167 NMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVS 226

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           K    + + FN +I A G++  VD+   VL++M    +   P+  T    +   A  GQ+
Sbjct: 227 KGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVE--NDCQPNQFTYSITLDILATEGQL 284

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA----CSVYDD------------ 294
            R  EV  +  ++  +    +Y+  +    ++G    A    C +++             
Sbjct: 285 HRLNEVLDICSRFMNRS---IYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSM 341

Query: 295 -------------------MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
                              M +KG++ D    + +    G   +V     +  + K  GI
Sbjct: 342 LEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGI 401

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              + +Y+ ++ +        KA EL+E M++   KP V T N+LI  L     L +   
Sbjct: 402 IPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHM 461

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           +  +M+  G  P+  TYSIL+    + + VE+   L  +   +G  PN+V +  ++    
Sbjct: 462 LFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLE 521

Query: 456 RR--YEKARTLNE 466
           RR   E+A  L E
Sbjct: 522 RRGKTEEAHKLYE 534



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 180/432 (41%), Gaps = 12/432 (2%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           +R   +S+   + E+M RKG   +D   +    +       + +AF+ F+ +      P 
Sbjct: 139 LRSREVSKGFQVYEEMRRKGY-KLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPD 197

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+ +L+ +   +  +         +   G   +   + T+I    K+  VD +  V  
Sbjct: 198 AYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLS 257

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI-MRSKNVKPDRVVFNALITACGQS 210
           +MV    +PN  TY   +D  A  GQ+ +      I  R  N    R +++ L+ +  +S
Sbjct: 258 KMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMN----RSIYSYLVKSLCKS 313

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G    A +V   M       D D     ++++   NA +   A ++  M+ +  I     
Sbjct: 314 GHASEAHNVFCRMWNSHEKGDRDAFV--SMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVG 371

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           +Y +  +   +     F  +++D M   G+IPD    + +I   G  G V+ A E+ +  
Sbjct: 372 MYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVM 431

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           +       +++Y+SL+       +  +A  L++ M+     P V T + LI      +++
Sbjct: 432 EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKV 491

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                +  +M S G  PN +TY+ILL   ER+   E    L    K+ G+IP+ + +  +
Sbjct: 492 EMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 551

Query: 451 IGMCSRRYEKAR 462
             + SR     R
Sbjct: 552 ERLESRSQRTVR 563


>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
          Length = 987

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/471 (22%), Positives = 200/471 (42%), Gaps = 48/471 (10%)

Query: 26  SEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  LH Y  LI+    +GRI +   LL++M  +G++     Y+A     CKS + +K+A 
Sbjct: 281 SLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGR-MKDAL 339

Query: 82  RFFKLVP--------------------------------------NPTLSTFNMLMSVCA 103
               L+                                        PT+ TF  L++   
Sbjct: 340 GIKALMEQNGCNPDDWTYNSLIYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYC 399

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
            ++  + A +V   +  +  K D + Y  LI    K  ++    E  +EM   G+ PNV 
Sbjct: 400 KAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVV 459

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
            Y ++IDG  K G V  A   + +M  +   P+   + +LI    Q   + +A  ++ +M
Sbjct: 460 IYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKM 519

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
             +   + P  I    L++      + D A  +++M+ K  +    + Y +  +   ++G
Sbjct: 520 QED--GITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSG 577

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
             E A   Y  + +KGV+  +V  ++L+D    AG  + A  ++++  N+G    + +YS
Sbjct: 578 RAEEA---YSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYS 634

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            L+ A    K   +AL + + M    +K  +     +I+ +    +      + ++M S 
Sbjct: 635 VLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISS 694

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
           G  P+  TY++ + +  +   +E    L+ + + DGV P++V +   I  C
Sbjct: 695 GHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGC 745



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 200/489 (40%), Gaps = 24/489 (4%)

Query: 31  SYNRLIRQ---GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           +YN LI     G++ E  +LL     +G       +       CK+++ I +A R    +
Sbjct: 356 TYNSLIYGLCGGKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAER-IDDALRVKSNM 414

Query: 88  PNPT----LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +      L  + +L++V       + A + L  +   GL  +  +YT++I    K G V
Sbjct: 415 ISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMV 474

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
            A  EVF  M + G  PN  TYG+LI G  +  ++ KA      M+   + P  + +  L
Sbjct: 475 GAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTL 534

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I    +    D AF +   M  E + + PD      L  A   +G   RA E Y  + + 
Sbjct: 535 IQGQCKKHEFDNAFRLFEMM--EKNGLTPDEQAYNVLTDALCKSG---RAEEAYSFLVRK 589

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            +  T   YT  ++  S+ G+ +FA  + + M  +G   D    S L+       K+  A
Sbjct: 590 GVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEA 649

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             IL +    G+   I++Y+ ++           A  L+  M S   KP+ +T    I++
Sbjct: 650 LSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISS 709

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
            C   Q+ +   ++ +M+  G+ P+ +TY I +  C     ++     L +  +    PN
Sbjct: 710 YCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPN 769

Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIE--NKWTSLALMVYREAIVAGTIPT 501
              +  ++    + + K   +N H +  +     IE    W  L  M+       G  PT
Sbjct: 770 CWTYWLLL----KHFLKMSLINAHYIDTSGMWNWIELNTVWQLLERMMKH-----GLNPT 820

Query: 502 VEVVSKVLG 510
           V   S ++ 
Sbjct: 821 VVTYSSIIA 829



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 134/308 (43%), Gaps = 6/308 (1%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E    V  +VQ+ G   +  +YT LI    K G++     +  EM   G+ P+V TY A+
Sbjct: 267 EALVLVFMMVQD-GCSLNLHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAM 325

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEV 227
           IDG  K+G++  A G   +M      PD   +N+LI   CG  G +D A ++L    A  
Sbjct: 326 IDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG--GKLDEAEELLN--GAIA 381

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
               P  IT   L+     A ++D A  V   +   N K   + Y + IN   +    + 
Sbjct: 382 RGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKE 441

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A    ++M   G+ P+ V  +++ID     G V AA E+ +  +++G      +Y SL+ 
Sbjct: 442 AKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIY 501

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
                K   KA+ L   M+   + P V     LI   C   +      +   M+  GL P
Sbjct: 502 GLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTP 561

Query: 408 NTITYSIL 415
           +   Y++L
Sbjct: 562 DEQAYNVL 569



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 103/470 (21%), Positives = 191/470 (40%), Gaps = 29/470 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N LI++ R+ E  + L +M   GL     +Y +     CK    +  A   FKL+ +   
Sbjct: 431 NVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKV-GMVGAALEVFKLMEHEGC 489

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+  L+      K    A  ++  +QE G+      YTTLI    K  + D  F 
Sbjct: 490 HPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFR 549

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F  M   G+ P+   Y  L D   K+G   +A  AY  +  K V   +V + +L+    
Sbjct: 550 LFEMMEKNGLTPDEQAYNVLTDALCKSG---RAEEAYSFLVRKGVVLTKVTYTSLVDGFS 606

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G  D A  ++ +M  E      D  T   L++A     +++ A  +   +    +K  
Sbjct: 607 KAGNTDFAAVLIEKMVNE--GCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCN 664

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YTI I+   + G  + A S++++M   G  P     +  I      G++E A  ++ 
Sbjct: 665 IVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIG 724

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI------- 381
           E +  G++  +++Y   +  C +     +A    + M     +P   T   L+       
Sbjct: 725 EMERDGVTPDVVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMS 784

Query: 382 ---------TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
                    + + +  +L    ++L  M   GL P  +TYS ++    +   +E   +LL
Sbjct: 785 LINAHYIDTSGMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLL 844

Query: 433 SQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFNSGRPQIEN 480
                  + PN  ++  +I  C   + + K  +    ++ F   +PQ+E+
Sbjct: 845 DHMLGKAISPNEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGF-QPQLES 893



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/412 (23%), Positives = 169/412 (41%), Gaps = 31/412 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           LI+  ++ + + L+  M+  G+      Y       CK  +    AFR F+++      P
Sbjct: 503 LIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCKKHE-FDNAFRLFEMMEKNGLTP 561

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
               +N+L      S  +E A+  L      G+      YT+L+   +K+G  D    + 
Sbjct: 562 DEQAYNVLTDALCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLI 618

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +MVN G + +++TY  L+    K  ++ +A      M    VK + V +  +I+   + 
Sbjct: 619 EKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKE 678

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G  D A  +  EM +  H   P   T    + +    GQ++ A  +   + +  +  TP+
Sbjct: 679 GKHDHAKSLFNEMISSGHK--PSATTYTVFISSYCKIGQIEEAEHLIGEMERDGV--TPD 734

Query: 271 V--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--------EVFL------SALIDFA 314
           V  Y I IN C   G  + A S    M      P+        + FL      +  ID +
Sbjct: 735 VVTYHIFINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTS 794

Query: 315 GHAGKVE--AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
           G    +E    +++L+     G++  +++YSS++     A   ++A  L +HM    + P
Sbjct: 795 GMWNWIELNTVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLDHMLGKAISP 854

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKD 423
                  LI   CD     K +  ++DM   G  P   +Y  L+V  C+  D
Sbjct: 855 NEEIYTMLIKCCCDIKLFGKDVSFVTDMIEFGFQPQLESYHYLIVGLCDEGD 906



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 169/402 (42%), Gaps = 10/402 (2%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSV 101
           L   + ++GLL     Y+      CK + ++  A R+F L+        T +   +L+  
Sbjct: 166 LYSHLVQEGLLPDTVTYNTMIMAYCK-KGSLAIAHRYFCLLRESGMQMDTYTCNALLLGY 224

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
           C +S D   A  +L ++   G + +   YT LI    ++  V     +   MV  G   N
Sbjct: 225 CRTS-DLRKACWLLMMMPLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLN 283

Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
           +H Y  LI G  K G++  A G    M  + V P    +NA+I    +SG +  A  + A
Sbjct: 284 LHMYTLLIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKA 343

Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
            M  E +  +PD  T  +L+      G++D A E+           T   +T  IN   +
Sbjct: 344 LM--EQNGCNPDDWTYNSLIYGLC-GGKLDEAEELLNGAIARGFTPTVITFTNLINGYCK 400

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
               + A  V  +M       D      LI+      +++ A E L E    G++  ++ 
Sbjct: 401 AERIDDALRVKSNMISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVI 460

Query: 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401
           Y+S++           ALE+++ M+     P   T  +LI  L    +L K M +++ M+
Sbjct: 461 YTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQ 520

Query: 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
             G+ P  I Y+ L+    +K + +    L    +++G+ P+
Sbjct: 521 EDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPD 562



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 155/355 (43%), Gaps = 14/355 (3%)

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
           +++  A Q +R V    L    K Y   + +  +    + M +++  +V  G+ P+  TY
Sbjct: 123 REAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGLLPDTVTY 182

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
             +I    K G +A A   + ++R   ++ D    NAL+    ++  + +A  +L  M  
Sbjct: 183 NTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACWLLMMM-- 240

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
            +     +  +   L++    A  V  A  +  M+ +        +YT+ I    + G  
Sbjct: 241 PLMGCRRNEYSYTILIQGLYEARCVREALVLVFMMVQDGCSLNLHMYTLLIKGLCKEGRI 300

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
             A  + D+M  +GV+P     +A+ID    +G+++ A  I    +  G +    +Y+SL
Sbjct: 301 HDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSL 360

Query: 346 M-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-- 402
           + G C    +  +A EL     +    PTV T   LI   C  +++   + V S+M S  
Sbjct: 361 IYGLCGGKLD--EAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSN 418

Query: 403 --LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
             L L    +  ++L+  C  K+  E     L++   +G+ PN+V++  II G C
Sbjct: 419 CKLDLQAYGVLINVLIKKCRLKEAKET----LNEMFANGLAPNVVIYTSIIDGYC 469


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/456 (22%), Positives = 191/456 (41%), Gaps = 45/456 (9%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH VS  + SY  LI    R G+    ++LLE M+++ +      Y+    +  +     
Sbjct: 171 AHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDW 230

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +     F  + +    P + T+N L+  C++    + A  V R + E G+  D   YT L
Sbjct: 231 EGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYL 290

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           + T  K  ++D + E+  EM + G  P + +Y  L++  A+ G +  A G + +M+    
Sbjct: 291 VDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGC 350

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
            P+   ++ L+   G+ G  D   ++  EM  +V   +PD  T   L+      G     
Sbjct: 351 VPNAETYSILLGLYGKHGRYDEVRELFLEM--KVSNTEPDAATYNTLIDVFGEGGYFKEV 408

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
             ++  + + N++   E Y   I  C + G  + A  +   M++KG+IP     + +I+ 
Sbjct: 409 VTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEA 468

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSL-------------------MGACSNAK- 353
            G A   E A   L      G    I +Y++L                   MG    A+ 
Sbjct: 469 YGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLYKETEAILLKMGDFGVARE 528

Query: 354 ---------------NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
                           +++A++ Y  M+  +L P   T+ A+++  C    + +++E   
Sbjct: 529 RDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQ 588

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           ++K+ G+ PN + Y ++L    + D       LL +
Sbjct: 589 EIKASGILPNVMCYCMMLAVYAKSDRWNEAYELLDE 624



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/449 (22%), Positives = 192/449 (42%), Gaps = 21/449 (4%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +   Y++DV   ++  + L  +G I+ C+D+ ++  +  L D      A  F     +  
Sbjct: 70  EKGKYSYDVETLINKLSSLPPRGSIARCLDVFKN--KLSLNDF-----ALVFKEFAQRGD 122

Query: 77  IKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            + + R FK +       P    + +++S+       E    +   +   G+      YT
Sbjct: 123 WQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYT 182

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA-FGAYGIMRS 190
            LI +  ++GK +   E+   M    + P++ TY  +I+ CA+ G   +   G +  MR 
Sbjct: 183 ALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRH 242

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           + ++PD V +N L+ AC   G  D A  V   MN     V PD  T   L+       ++
Sbjct: 243 EGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNE--GGVVPDITTYTYLVDTFGKLNRL 300

Query: 251 DRAREVYK-MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           D+  E+ K M    N+   PE+  Y + +   ++ G+ E A  V+  M + G +P+    
Sbjct: 301 DKVSELLKEMASTGNV---PEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETY 357

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           S L+   G  G+ +   E+  E K         +Y++L+        +++ + L+  M  
Sbjct: 358 SILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAE 417

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
             ++P + T   LI A   G       ++L  M   G+ P++  Y+ ++ A  +    E 
Sbjct: 418 ENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEE 477

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
            L+ L+   E G  P +  +  +I M +R
Sbjct: 478 ALVTLNTMNEMGSKPTIETYNTLIYMFAR 506



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 117/508 (23%), Positives = 217/508 (42%), Gaps = 58/508 (11%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           +L+ F ++    A   D + + ++ + +Q +   K +  +YT +I+   + G ++   ++
Sbjct: 106 SLNDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDI 165

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM   G+  +V +Y ALI+   + G+   +      M+ + V P  + +N +I +C +
Sbjct: 166 FEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCAR 225

Query: 210 SGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G   +    + AEM  E   + PD +T   L+ AC+N G  D A  V++ +++  +   
Sbjct: 226 GGLDWEGLLGLFAEMRHE--GIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPD 283

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA---FE 325
              YT  ++   +    +    +  +M   G +P+    + L++     G +E A   F 
Sbjct: 284 ITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFR 343

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           ++QEA   G      +YS L+G       + +  EL+  MK    +P  +T N LI    
Sbjct: 344 LMQEA---GCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFG 400

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIP 442
           +G    + + +  DM    + PN  TY  L+ AC +    DD +  L+ +S   E G+IP
Sbjct: 401 EGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMS---EKGMIP 457

Query: 443 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNS-----GRPQIENKWTSLALMVYREAIVAG 497
           +   +  +I      Y +A    E +++ N+      +P IE  + +L  M  R  +   
Sbjct: 458 SSKAYTGVI----EAYGQAAMYEEALVTLNTMNEMGSKPTIET-YNTLIYMFARGGLYKE 512

Query: 498 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSL 557
           T                       E ++  +G    A +R +   +I+GF     R    
Sbjct: 513 T-----------------------EAILLKMGDFGVARERDSFNGVIEGF-----RQGGQ 544

Query: 558 LEEAASFGIVPCVSFKEIPVVVDARKLE 585
            EEA    I   V  ++  +V D R LE
Sbjct: 545 FEEA----IKAYVEMEKSRLVPDERTLE 568



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 162/391 (41%), Gaps = 38/391 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +S++N+L+   A   + E A  V RL+QEAG   + + Y+ L+    K G+ D + E+
Sbjct: 317 PEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVREL 376

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM  +  EP+  TY  LID   + G   +    +  M  +NV+P+   +  LI ACG+
Sbjct: 377 FLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGK 436

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  D A  +L  M+ +   + P       +++A   A   + A      +++   K T 
Sbjct: 437 GGLHDDAKKILLHMSEK--GMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTI 494

Query: 270 EVYTI-----------------------------------AINCCSQTGDWEFACSVYDD 294
           E Y                                      I    Q G +E A   Y +
Sbjct: 495 ETYNTLIYMFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVE 554

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K  ++PDE  L A++     AG V+ + E  QE K  GI   ++ Y  ++   + +  
Sbjct: 555 MEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDR 614

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD-MKSLGLCPNTITYS 413
           W +A EL + M + +       +  +I    D D   + +E + D + S G       Y+
Sbjct: 615 WNEAYELLDEMLTNRASNIHQVIGQMIKGDFDDDSNWQMVEYVFDKLNSEGCGLGMRFYN 674

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
            LL A       E  + +L +A + G  P L
Sbjct: 675 TLLEALWWLGQKERAVRVLGEATKRGHFPEL 705



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/337 (20%), Positives = 128/337 (37%), Gaps = 16/337 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +YN LI      G   E + L  DM  + +    + Y    F   K      A K     
Sbjct: 391 TYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHM 450

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P+   +  ++     +   E A   L  + E G K   + Y TLI   A+ G  
Sbjct: 451 SEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLY 510

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                +  +M + G+     ++  +I+G  + GQ  +A  AY  M    + PD     A+
Sbjct: 511 KETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAV 570

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           ++    +G VD + +   E+ A    + P+ +    ++   A +   DR  E Y+++ + 
Sbjct: 571 LSVYCIAGLVDESVEQFQEIKAS--GILPNVMCYCMMLAVYAKS---DRWNEAYELLDEM 625

Query: 264 NIKGTPEVYTIAINCCSQTGD----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
                  ++ +         D    W+    V+D +  +G      F + L++     G+
Sbjct: 626 LTNRASNIHQVIGQMIKGDFDDDSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQ 685

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
            E A  +L EA  +G    +   S L+ +    + W+
Sbjct: 686 KERAVRVLGEATKRGHFPELFRKSKLVWSVDIHRMWE 722


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 177/402 (44%), Gaps = 11/402 (2%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S   H+YN L+    R G + E   ++E M R  LL     Y+      C   K I EA
Sbjct: 279 LSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGK-IDEA 337

Query: 81  FRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           FR      K+   P + T+N L+  C+  +DS   + ++  + + G+K +   Y  ++  
Sbjct: 338 FRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKW 397

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G +        +M   G+ P+  TY  LI    KAG++ KAF     M SK +K D
Sbjct: 398 MCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKID 457

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
               N ++        +D A+++L   +   + +D   ++ G L+       + DRA  +
Sbjct: 458 TWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILD--EVSYGILILGYFKDEKGDRALNL 515

Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
           +  + +  I  +   Y   I    Q+   + A    ++M + G++PDE   + +I     
Sbjct: 516 WDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCL 575

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G VE AF+   E         + + + L+         +KAL+L+  + S      V T
Sbjct: 576 EGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVT 635

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            N +I++LC   +     ++L++M++  L P+  TY +++ A
Sbjct: 636 YNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAA 677



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/433 (23%), Positives = 202/433 (46%), Gaps = 17/433 (3%)

Query: 31  SYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN     L+++  + E  DLL DM+ KGL      Y+      C+    +KEA +  ++
Sbjct: 250 SYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCR-LGLLKEATKVIEI 308

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      PT+ T+NML++   +    + AF++   +++  +  D   Y TLI  C++   
Sbjct: 309 MTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRD 368

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
              ++ +  EM   G++ N  TY  ++    K G + +A      M    + PD V +N 
Sbjct: 369 SSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNT 428

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI A  ++G + +AF ++ EM ++   +D    T+  ++       ++D   E Y ++  
Sbjct: 429 LIGAYCKAGKMGKAFRMMDEMTSKGLKIDT--WTLNTILHCLCVEKKLD---EAYNLLCS 483

Query: 263 YNIKG--TPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
            + +G    EV Y I I    +    + A +++D+M ++ ++P  +  +++I     + K
Sbjct: 484 ASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRK 543

Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
           V+ A + L E    G+     +Y+ ++       N +KA + +  M     KP V T N 
Sbjct: 544 VDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDVYTCNI 603

Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
           L+  LC    L K +++ + + S G   + +TY+ ++ +  ++   E    LL++ +   
Sbjct: 604 LLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKK 663

Query: 440 VIPNLVMFKCIIG 452
           + P+   +K II 
Sbjct: 664 LGPDQYTYKVIIA 676



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 179/407 (43%), Gaps = 50/407 (12%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P  ++FN+L+   C  SK  + A   +  + E G   D   Y T++    K   +    +
Sbjct: 211 PNTNSFNILIYGYCLESK-VKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARD 269

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M + G+ PN HTY  L+ G  + G + +A     IM   N+ P    +N L+    
Sbjct: 270 LLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFC 329

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
             G +D AF +  EM  E   V PD +T   L+  C+   Q   + EVY +I + + KG 
Sbjct: 330 NDGKIDEAFRIRDEM--EKMNVLPDVVTYNTLIDGCS---QWRDSSEVYSLIEEMDKKGV 384

Query: 268 --TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 Y I +    + G+   A +  D M + G+ PD V  + LI     AGK+  AF 
Sbjct: 385 KCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFR 444

Query: 326 ILQEAKNQGISVGIISYSSLMGA--------------CSNAK------------------ 353
           ++ E  ++G+ +   + ++++                CS +K                  
Sbjct: 445 MMDEMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYF 504

Query: 354 ---NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
                 +AL L++ MK  ++ P+  T N++I  LC   ++ + ++ L++M   GL P+  
Sbjct: 505 KDEKGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDET 564

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMC 454
           TY+I++     + +VE      ++  E+   P++  + C I   G+C
Sbjct: 565 TYNIIIHGFCLEGNVEKAFQFHNEMIENLFKPDV--YTCNILLRGLC 609



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 174/388 (44%), Gaps = 8/388 (2%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEG---AFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +L   P L T N LM+       S     A QVL+   + G+  +   +  LI       
Sbjct: 168 RLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNILIYGYCLES 227

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           KV    +  ++M   G  P+  +Y  ++D   K   + +A      M+SK + P++  +N
Sbjct: 228 KVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYN 287

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            L+    + G +  A  V+  M    + + P   T   L+    N G++D A  +   + 
Sbjct: 288 MLVCGYCRLGLLKEATKVIEIMTR--NNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEME 345

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K N+      Y   I+ CSQ  D     S+ ++M KKGV  + V  + ++ +    G + 
Sbjct: 346 KMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMT 405

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A   L + +  G+S   ++Y++L+GA   A    KA  + + M S  LK    T+N ++
Sbjct: 406 EATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTIL 465

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
             LC   +L +   +L      G   + ++Y IL++   + +  +  L L  + KE  ++
Sbjct: 466 HCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIM 525

Query: 442 PNLVMFKCII-GMC-SRRYEKA-RTLNE 466
           P+ + +  +I G+C SR+ ++A   LNE
Sbjct: 526 PSTITYNSVIGGLCQSRKVDQAIDKLNE 553



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 25/234 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+  T+N ++     S+  + A   L  + E GL  D   Y  +I      G V+  F+ 
Sbjct: 526 PSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQF 585

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
            +EM+    +P+V+T   L+ G  + G + KA   +  + SK    D V +N +I++  +
Sbjct: 586 HNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCK 645

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE-VYKM-----IHKY 263
            G  + A+D+L EM A+   + PD  T   ++ A  +AG++  A E   KM     +H  
Sbjct: 646 EGKFENAYDLLTEMEAK--KLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQ 703

Query: 264 NIK-------GTPEV----------YTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           N+K        T EV          Y+  IN       ++ A  ++ ++TK+GV
Sbjct: 704 NLKLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGV 757


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 108/493 (21%), Positives = 206/493 (41%), Gaps = 76/493 (15%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           K+A ++ DV           + G        L+ M   GL     +Y+     +CK+   
Sbjct: 21  KYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKA-GM 79

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + EA  + K +P    P + ++N+++     +++ E A   LR ++E G       Y+++
Sbjct: 80  LAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSI 139

Query: 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193
           + +  K+G V    +VF EM   G EP++  +  L+ G  +A ++ +A   +  M S+  
Sbjct: 140 VQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGC 199

Query: 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
           KPD V +N +I    +   +D A  +L  M  E   V P  +T   L+       ++ +A
Sbjct: 200 KPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQE--DVSPTFVTYTTLIDHLCKFARLQQA 257

Query: 254 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313
            EV++ + +     T   Y++ I                                 LI+ 
Sbjct: 258 YEVFEKMAEGPCPCTEPAYSVLI---------------------------------LING 284

Query: 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
              A +   A E+ QE + +GIS  +++Y++L+    +    Q A+EL   M      P 
Sbjct: 285 LCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPN 344

Query: 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL----------------- 416
           + T   LI++LC  DQ+ +  ++LS M+  G  P+   + +LL                 
Sbjct: 345 MFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYK 404

Query: 417 ----VACE--------------RKDDVEVGLMLLSQAKEDGVIPNLVMF-KCIIGMCSR- 456
               + C+              R+  V+     L Q  + G++P+   + K ++G+C + 
Sbjct: 405 EMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQG 464

Query: 457 RYEKARTLNEHVL 469
           + ++AR L E ++
Sbjct: 465 KADQARKLVEELV 477



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 136/307 (44%), Gaps = 9/307 (2%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM  AG  P+V ++  LI G  K+G   +       M    + P+ +++N LI+   
Sbjct: 16  IVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLC 75

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G +  A   L  M        P+ ++   ++     A  +++A    + + +     T
Sbjct: 76  KAGMLAEAESYLKRMPQHCA---PNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPT 132

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P  Y+  +    +TG+   A  V+ +M  KG  PD V  + L+     A K+  A E+ +
Sbjct: 133 PHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFR 192

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
              ++G    +++Y++++      K   +A+ L E MK   + PT  T   LI  LC   
Sbjct: 193 SMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFA 252

Query: 389 QLPKTMEVLSDMKSLGLCPNT-ITYSILLVA---CERKDDVEVGLMLLSQAKEDGVIPNL 444
           +L +  EV   M   G CP T   YS+L++    C+ +   E   M   + +  G+ P +
Sbjct: 253 RLQQAYEVFEKMAE-GPCPCTEPAYSVLILINGLCKARRPGEAKEM-FQEMRGRGISPTV 310

Query: 445 VMFKCII 451
           V +  ++
Sbjct: 311 VTYNTLL 317


>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
          Length = 1031

 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 175/414 (42%), Gaps = 45/414 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPNP 90
           + G + E +DL E M  + +L     Y       CK  K I  A    +      LVP+ 
Sbjct: 611 KHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGK-IVPALILLQMMLEKGLVPD- 668

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           T++   +L  +    +    ++    ++ + GL ADC  Y +++    K G+++ +  + 
Sbjct: 669 TIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLM 728

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
             M    + P+  +Y  L+ G  K GQ+++    Y  M  + +KPD V +  LI    + 
Sbjct: 729 RNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEY 788

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G ++ A   L +M  E   + P H    AL+ A    G +D                   
Sbjct: 789 GLIEIAVKFLEKMVLEESGLQPKHTHYIALINAKCRVGDID------------------- 829

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
                       G +E      +DM   GV+P EV  S+++      GKVE A  +    
Sbjct: 830 ------------GAFELK----EDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFSSI 873

Query: 331 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
              G+   I ++++LM G C   K    A  L + M+S  LK  V T N LIT LC+   
Sbjct: 874 MRAGMVPTIATFTTLMHGLCKEFK-IDDAFHLKQLMESCGLKVDVVTYNVLITGLCNKKC 932

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           +   +++  +MKS GL PN  TY  L  A      ++ G  LL   ++ G++P+
Sbjct: 933 ICDALDLYEEMKSKGLLPNITTYITLTGAMYATGTMQDGEKLLKDIEDRGIVPS 986



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/458 (23%), Positives = 195/458 (42%), Gaps = 58/458 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N L  QG++S+   +L+ M+   L   + V +    N    +   K A R      K   
Sbjct: 238 NSLCTQGKLSKAESMLQKMKNCRL--PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGI 295

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
              L T+N+++      K S  A+ +L+ ++E  L  D   Y TLI      GK++    
Sbjct: 296 EADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIY 355

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F++M+   ++P+V TY ALIDG  + G+  +A               RV++   IT   
Sbjct: 356 IFNQMLRQSLKPSVATYTALIDGYCRNGRTDEA--------------RRVLYEMQITGV- 400

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +   V +A  +L  M A+   +DPD IT  AL+      G +   +E+   + K  +   
Sbjct: 401 RPREVSKAKQILKCMLAD--GIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPN 458

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
             +YT  +    + G  + A   + D+ + G++ + V  +AL+      G +  A +  Q
Sbjct: 459 NVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQ 518

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
                 IS  + S++ ++ +     N  +A  +Y++M      P + T  +L+  LC G 
Sbjct: 519 YMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGG 578

Query: 389 QLPKTMEVLS---------DMKSL-----GLC---------------------PNTITYS 413
            L +  E +          D K+L     G+C                     P+T TY+
Sbjct: 579 HLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYT 638

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           ILL    ++  +   L+LL    E G++P+ + + C++
Sbjct: 639 ILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLL 676



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 125/565 (22%), Positives = 233/565 (41%), Gaps = 69/565 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N + + G I E  ++L  M++ G+L  + +Y    F  CK+  A KEA ++F  +    L
Sbjct: 432 NGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHA-KEALKYFVDIYRSGL 490

Query: 93  STFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
              +++ +    S   EG    A Q  + +    +  D   +  +I +  + G V   F 
Sbjct: 491 VANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFS 550

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKNVKPDRVVFNALITA 206
           V+  MV  G  P++ TYG+L+ G  + G +  AK F  Y  +  K    D    N L+  
Sbjct: 551 VYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVY--LLEKACAIDEKTLNTLLVG 608

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             + G +D A D+  +M      + PD  T   L+      G++  A  + +M       
Sbjct: 609 ICKHGTLDEALDLCEKM--VTRNILPDTYTYTILLDGFCKRGKIVPALILLQM------- 659

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                                       M +KG++PD +  + L++   + G+V+AA  +
Sbjct: 660 ----------------------------MLEKGLVPDTIAYTCLLNGLVNEGQVKAASYM 691

Query: 327 LQEAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
            QE    +G+    I+Y+S+M          +   L  +M   ++ P+ ++ N L+    
Sbjct: 692 FQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYI 751

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA--KEDGVIPN 443
              QL +T+ +  DM   G+ P+ +TY +L+        +E+ +  L +   +E G+ P 
Sbjct: 752 KKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEESGLQPK 811

Query: 444 ------LVMFKCIIGMCSRRYEKARTLN------EHVLSFNSGRPQIENKWTSLALMVYR 491
                 L+  KC +G     +E    +         V   +  R   +      A++V+ 
Sbjct: 812 HTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAIIVFS 871

Query: 492 EAIVAGTIPTVEVVSKVLGCLQLPYNADIR---ERLVENLGVSADALKRSNLCSLIDGFG 548
             + AG +PT+   + ++  L   +  D     ++L+E+ G+  D +  +    LI G  
Sbjct: 872 SIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTYN---VLITGLC 928

Query: 549 EYD--PRAFSLLEEAASFGIVPCVS 571
                  A  L EE  S G++P ++
Sbjct: 929 NKKCICDALDLYEEMKSKGLLPNIT 953



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 163/400 (40%), Gaps = 38/400 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  L+           A + +  + E     D K   TL+    K G +D   ++
Sbjct: 562 PDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTLDEALDL 621

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +MV   I P+ +TY  L+DG  K G++  A     +M  K + PD + +  L+     
Sbjct: 622 CEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVN 681

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G V  A  +  E+  +   +  D I   ++M      GQ++    + + +H+  +  + 
Sbjct: 682 EGQVKAASYMFQEIICK-EGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSS 740

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV--------------------FLS- 308
             Y I ++   + G       +Y DM K+G+ PD V                    FL  
Sbjct: 741 ASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEK 800

Query: 309 ----------------ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
                           ALI+     G ++ AFE+ ++ K  G+    ++ SS++      
Sbjct: 801 MVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKC 860

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
              ++A+ ++  +    + PT++T   L+  LC   ++     +   M+S GL  + +TY
Sbjct: 861 GKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKVDVVTY 920

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           ++L+     K  +   L L  + K  G++PN+  +  + G
Sbjct: 921 NVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTG 960



 Score = 39.3 bits (90), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 104/265 (39%), Gaps = 30/265 (11%)

Query: 227 VHPVDPDHITIGALMK------ACANAGQVDRA------REVYKMIHKYNIKGTPEVYTI 274
           VH V+   IT+ A+ +          +G++D+A      R +  ++ +  +     +Y +
Sbjct: 54  VHGVESSIITVLAMQRWETLSQMAYKSGKLDKAHGKLALRMLDSIVQQSGLDRITHIYCM 113

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL-------------IDFAGHA---- 317
           A++   Q      A SV   +   G     +F S L             +D   +A    
Sbjct: 114 AVHILVQAQMPSQAMSVLRHLALTGFSCSAIFSSLLRTISRCDPTNLFSVDLLVNAYVKE 173

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           GKV  A   +      G    + S ++++ A       +      +     K    V+T 
Sbjct: 174 GKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFLKESLDRKFPLDVTTC 233

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N ++ +LC   +L K   +L  MK+  L PN +TY+ +L    +K   +  L +L   ++
Sbjct: 234 NIVLNSLCTQGKLSKAESMLQKMKNCRL-PNAVTYNTILNWYVKKGRCKSALRILDDMEK 292

Query: 438 DGVIPNLVMFKCIIGMCSRRYEKAR 462
           +G+  +L  +  +I    +    AR
Sbjct: 293 NGIEADLYTYNIMIDKLCKLKRSAR 317


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 144/308 (46%), Gaps = 4/308 (1%)

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
            + D   YTT+I    ++ +  A+ ++  +M+  G +PNV TY  +I    +A  +  A 
Sbjct: 375 FRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAV 434

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
             +  M+    +PDRV +  LI    +SG +D A  +  +M  +   + PD  T   ++ 
Sbjct: 435 NVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKM--QDAGLTPDTFTYSVMIN 492

Query: 243 ACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
               AG ++ A  ++ +M+ +  +      Y I I   ++  ++E A  +Y DM + G  
Sbjct: 493 CLGKAGHLNAAHRLFCRMVDEGCVPNL-VTYNIMIALQAKARNYEIALKLYRDMQQSGFE 551

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD+V    +++  GH G +E A  I  E + +        Y  L+     + N QKA E 
Sbjct: 552 PDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEW 611

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           Y  M    LKP V T N+L++A     QL    ++L  M + GL P+  TY++LL  C  
Sbjct: 612 YHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTD 671

Query: 422 KDDVEVGL 429
               ++G 
Sbjct: 672 AQTNDMGF 679



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 128/264 (48%), Gaps = 2/264 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N ++     +   + A  V + +QEAG + D   Y TLI   AKSG +D    +
Sbjct: 412 PNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGM 471

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           + +M +AG+ P+  TY  +I+   KAG +  A   +  M  +   P+ V +N +I    +
Sbjct: 472 YEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAK 531

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +   + A  +  +M  +    +PD +T   +M+   + G ++ A  ++  + K N     
Sbjct: 532 ARNYEIALKLYRDM--QQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDE 589

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY + ++   ++G+ + A   Y  M K G+ P+    ++L+       ++  A+++LQ 
Sbjct: 590 PVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQS 649

Query: 330 AKNQGISVGIISYSSLMGACSNAK 353
               G+   + +Y+ L+  C++A+
Sbjct: 650 MLTFGLKPSLQTYTLLLSCCTDAQ 673



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 126/309 (40%), Gaps = 45/309 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTL 92
           + G +   + + E M+  GL   D   ++   N       +  A R F ++V     P L
Sbjct: 461 KSGFLDVAMGMYEKMQDAGLTP-DTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNL 519

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-------------C------------ 127
            T+N+++++ A +++ E A ++ R +Q++G + D             C            
Sbjct: 520 VTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIE 579

Query: 128 ----------KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
                      +Y  L+    KSG V   +E +H M+ AG++PNV T  +L+    +  Q
Sbjct: 580 MQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQ 639

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           ++ A+     M +  +KP    +  L++ C  +   D  F     M    HP    H  +
Sbjct: 640 LSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGF-CCELMQVTGHPA---HTFL 695

Query: 238 GALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
            +L  A  N   V D   +   ++H  + +    +    ++   ++G  E A  V++   
Sbjct: 696 VSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAM 755

Query: 297 KKGVIPDEV 305
           +K V PD V
Sbjct: 756 QKNVYPDAV 764



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/263 (19%), Positives = 113/263 (42%), Gaps = 8/263 (3%)

Query: 185 YGIMRSKNVKPDRVVFNALITACG---QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
           Y + R    + D   +  +I   G   Q  A+++  D + +   +     P+ +T   ++
Sbjct: 367 YWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQ-----PNVVTYNRII 421

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            +   A  +  A  V+K + +   +     Y   I+  +++G  + A  +Y+ M   G+ 
Sbjct: 422 HSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLT 481

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD    S +I+  G AG + AA  +     ++G    +++Y+ ++   + A+N++ AL+L
Sbjct: 482 PDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKL 541

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           Y  M+    +P   T   ++  L     L +   +  +M+     P+   Y +L+    +
Sbjct: 542 YRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGK 601

Query: 422 KDDVEVGLMLLSQAKEDGVIPNL 444
             +V+          + G+ PN+
Sbjct: 602 SGNVQKAWEWYHAMLKAGLKPNV 624



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 1/182 (0%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  I    +   +     + D M K G  P+ V  + +I   G A  ++ A  + ++
Sbjct: 380 HTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQ 439

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            +  G     ++Y +L+   + +     A+ +YE M+   L P   T + +I  L     
Sbjct: 440 MQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGH 499

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L     +   M   G  PN +TY+I++    +  + E+ L L    ++ G  P+ V + C
Sbjct: 500 LNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTY-C 558

Query: 450 II 451
           I+
Sbjct: 559 IV 560



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + +I   G A +  A  ++L +    G    +++Y+ ++ +   A   Q A+ +++ M+ 
Sbjct: 383 TTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQE 442

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
              +P   T   LI        L   M +   M+  GL P+T TYS+++    +   +  
Sbjct: 443 AGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNA 502

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTL 464
              L  +  ++G +PNLV +  +I +   +R YE A  L
Sbjct: 503 AHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKL 541


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/420 (24%), Positives = 180/420 (42%), Gaps = 40/420 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAF-RFFKLVPNPT 91
           +  QG + E ++LL  +   G       Y+A    +C +++   ++E      ++   P 
Sbjct: 188 ICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPN 247

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           ++TFN L++    +   E   + L  + E G   D ++Y T+I    K G  +   ++  
Sbjct: 248 VATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILS 307

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M + G++PNV  Y  ++ G   A +  +A      M  ++   D V FN L+    Q+G
Sbjct: 308 RMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNG 367

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            VDR  ++L +M    H   PD IT   ++      G VD A  + K +     K     
Sbjct: 368 LVDRVIELLEQMLE--HGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTIS 425

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA----------------- 314
           YTI +    +   W  A  +   M ++G +P+ V  + LI+F                  
Sbjct: 426 YTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQML 485

Query: 315 ------------------GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
                             G AGK E A E+L    N+GI+   I YSS+  A S      
Sbjct: 486 VNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTD 545

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           K +++++ ++   ++   +  NA+I++LC   +  + ++  + M S G  PN  TY+IL+
Sbjct: 546 KIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILI 605



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 189/441 (42%), Gaps = 13/441 (2%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    ++Y  ++R    +G I++ + +L++M  +G      + H      C+     + A
Sbjct: 104 VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRG-GGFRSA 162

Query: 81  FRFFKLV--PNPTLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            R  +++     TL + N   ++ ++C      EG  ++LR +   G + D   Y  ++ 
Sbjct: 163 VRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEG-VELLRKLPSFGCEPDIVSYNAVLK 221

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
               + + D + E+  EMV  G  PNV T+  LI    + G   +   A   M      P
Sbjct: 222 GLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTP 281

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D  ++  +I    + G  + A D+L+ M +  + + P+ +    ++K   +A + + A +
Sbjct: 282 DLRMYATIIDGICKDGHHEVANDILSRMPS--YGLKPNVVCYNTVLKGLCSAERWEEAED 339

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +   + + +       + I ++   Q G  +    + + M + G IPD +  + +I+   
Sbjct: 340 LLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFC 399

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G V+ A  +L+     G     ISY+ ++     A+ W  A EL  HM      P   
Sbjct: 400 KEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPV 459

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N LI  +C    + + +E+L  M   G  P+ I+YS ++    +    E  L LL+  
Sbjct: 460 TFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVM 519

Query: 436 KEDGVIPNLVMFKCIIGMCSR 456
              G+ PN +++  +    SR
Sbjct: 520 INKGITPNTIIYSSMASALSR 540



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/386 (21%), Positives = 163/386 (42%), Gaps = 8/386 (2%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A + L+++   G   D      +++   + G VD   E+  ++ + G EP++ +Y A++ 
Sbjct: 162 AVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLK 221

Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
           G   A +          M      P+   FN LI    ++G  ++  + L++M    H  
Sbjct: 222 GLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPE--HGC 279

Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
            PD      ++      G  + A ++   +  Y +K     Y   +        WE A  
Sbjct: 280 TPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAED 339

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           +  +M ++    D+V  + L+DF    G V+   E+L++    G    +I+Y++++    
Sbjct: 340 LLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFC 399

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
                 +A+ L ++M +   KP   +   ++  LC  ++     E++S M   G  PN +
Sbjct: 400 KEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPV 459

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNEH 467
           T++ L+    +K  VE  + LL Q   +G  P+L+ +  +I   G   +  E    LN  
Sbjct: 460 TFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLN-- 517

Query: 468 VLSFNSGRPQIENKWTSLALMVYREA 493
            +  N G       ++S+A  + RE 
Sbjct: 518 -VMINKGITPNTIIYSSMASALSREG 542



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 127/300 (42%), Gaps = 10/300 (3%)

Query: 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226
           ALI     AG+ A A  A   + +       V +NA+I    ++G V  A  + A +   
Sbjct: 49  ALIRSLCAAGRTADAARA---LDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAV--- 102

Query: 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
             PV P+  T   ++++    G +  A  V   +       TP +  + +    + G + 
Sbjct: 103 --PVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFR 160

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            A      +  KG   D    + ++      G V+   E+L++  + G    I+SY++++
Sbjct: 161 SAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVL 220

Query: 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406
                AK W    EL   M  +   P V+T N LI  LC      +  E LS M   G  
Sbjct: 221 KGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCT 280

Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 464
           P+   Y+ ++    +    EV   +LS+    G+ PN+V +  ++ G+CS  R+E+A  L
Sbjct: 281 PDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDL 340



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 125/311 (40%), Gaps = 41/311 (13%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           TFN+L+     +   +   ++L  + E G   D   YTT+I    K G VD    +   M
Sbjct: 355 TFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNM 414

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G +PN  +Y  ++ G  +A +   A      M  +   P+ V FN LI    + G V
Sbjct: 415 SACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLV 474

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           ++A ++L +M   V+   PD I+   ++     AG+ + A E+  +              
Sbjct: 475 EQAIELLKQM--LVNGCSPDLISYSTVIDGLGKAGKTEEALELLNV-------------- 518

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
                                M  KG+ P+ +  S++       G+ +   ++    ++ 
Sbjct: 519 ---------------------MINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDA 557

Query: 334 GISVGIISYSSLMGACSNAKNWQ--KALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +      Y++++   S  K W+  +A++ + +M S    P  ST   LI  L     + 
Sbjct: 558 TVRSDAALYNAVIS--SLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEGLVR 615

Query: 392 KTMEVLSDMKS 402
           +  ++LS++ S
Sbjct: 616 EAQDLLSELCS 626


>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
          Length = 642

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 169/364 (46%), Gaps = 3/364 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P   T++ L+S       ++ A ++   +++  ++   K+YTTL+    K GKV+   ++
Sbjct: 231 PDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDL 290

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM  AG  P V+TY  LI G  KAG+V +A+G Y  M    + PD V  N L+   G+
Sbjct: 291 FEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGK 350

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC-ANAGQVDRAREVYKMIHKYNIKGT 268
            G V+   +V +EM   +    P  ++   ++KA   +   V      +  +   ++  +
Sbjct: 351 VGRVEELTNVFSEMG--MWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPS 408

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+I I+   +T   E A  + ++M +KG  P      +LI+  G A + EAA E+ +
Sbjct: 409 EFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFK 468

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E K    +V    Y+ ++          +A++L+  MK+    P V   NAL++ +    
Sbjct: 469 ELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAG 528

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            + +   +L  M+  G   +  +++I+L    R       + +    K  G+ P+ V + 
Sbjct: 529 MINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYN 588

Query: 449 CIIG 452
            ++G
Sbjct: 589 TLLG 592



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 153/346 (44%), Gaps = 5/346 (1%)

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMV-NAGIEPNVHTYGALIDGCAKAGQVAKA 181
            + DC  Y TLI    ++     M+    E+V N  +  +      L+    +A  V+KA
Sbjct: 122 FQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKA 181

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
              +   + +  KP    +N++I    Q G  ++  +V  EM  E     PD IT  AL+
Sbjct: 182 LSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCF-PDTITYSALI 240

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            +    G+ D A  ++  +    ++ T ++YT  +    + G  E A  ++++M + G  
Sbjct: 241 SSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCS 300

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           P     + LI   G AG+V+ A+   ++    G++  ++  ++LM         ++   +
Sbjct: 301 PTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNV 360

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           +  M   +  PTV + N +I AL +    + +       MK+  + P+  TYSIL+    
Sbjct: 361 FSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYC 420

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTL 464
           + + VE  L+LL +  E G  P    +  +I     ++RYE A  L
Sbjct: 421 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADEL 466



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 180/405 (44%), Gaps = 13/405 (3%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFK 85
           + SY +L   GR    I L ++M+   +   +K+Y      +F V K +KA+       +
Sbjct: 240 ISSYEKL---GRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKR 296

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
              +PT+ T+  L+     +   + A+   + +   GL  D      L+    K G+V+ 
Sbjct: 297 AGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEE 356

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKA-GQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           +  VF EM      P V +Y  +I    ++   V++    +  M++ +V P    ++ LI
Sbjct: 357 LTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILI 416

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
               ++  V++A  +L EM+ +  P  P      +L+ A   A + + A E++K + +  
Sbjct: 417 DGYCKTNRVEKALLLLEEMDEKGFP--PCPAAYCSLINALGKAKRYEAADELFKELKENF 474

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
              +  VY + I    + G    A  ++++M  +G  PD    +AL+     AG +  A 
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEAN 534

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +L++ +  G    I S++ ++   +     ++A+E++E +K   +KP   T N L+   
Sbjct: 535 SLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCF 594

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC----ERKDDV 425
                  +   ++ +MK  G   + ITYS +L A       KDDV
Sbjct: 595 AHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDV 639



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 107/463 (23%), Positives = 181/463 (39%), Gaps = 73/463 (15%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           +QF    GK  N+ HD S    +Y  LIR      C++                  AR +
Sbjct: 110 IQFFKWAGKRRNFQHDCS----TYMTLIR------CLE-----------------EARLY 142

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
              +  + I+E  R   +  +P +   + L+     +K    A  V    +    K    
Sbjct: 143 G--EMYRTIQEVVRNTYVSVSPAV--LSELVKALGRAKMVSKALSVFYQAKGRKCKPTSS 198

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187
            Y ++I    + G+ + + EV+ EM N G   P+  TY ALI    K G+   A   +  
Sbjct: 199 TYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDE 258

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M+   ++P   ++  L+    + G V++A D+  EM        P   T   L+K    A
Sbjct: 259 MKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRA--GCSPTVYTYTELIKGLGKA 316

Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
           G+VD A   YK                                   DM + G+ PD VFL
Sbjct: 317 GRVDEAYGFYK-----------------------------------DMLRDGLTPDVVFL 341

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMK 366
           + L++  G  G+VE    +  E      +  ++SY++++ A   +K +  +    ++ MK
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK 401

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           +  + P+  T + LI   C  +++ K + +L +M   G  P    Y  L+ A  +    E
Sbjct: 402 ADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461

Query: 427 VGLMLLSQAKED-GVIPNLVMFKCI--IGMCSRRYEKARTLNE 466
               L  + KE+ G + + V    I   G C +  E     NE
Sbjct: 462 AADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNE 504



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 4/149 (2%)

Query: 324 FEILQEA-KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           +  +QE  +N  +SV     S L+ A   AK   KAL ++   K  K KPT ST N++I 
Sbjct: 146 YRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVIL 205

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            L    Q  K  EV ++M + G C P+TITYS L+ + E+    +  + L  + K++ + 
Sbjct: 206 MLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQ 265

Query: 442 PNLVMFKCIIGMCSR--RYEKARTLNEHV 468
           P   ++  ++G+  +  + EKA  L E +
Sbjct: 266 PTEKIYTTLLGIYFKVGKVEKALDLFEEM 294


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 119/536 (22%), Positives = 232/536 (43%), Gaps = 31/536 (5%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RFFKLVPNPTLSTFNM 97
           I +   L E M   G++       +  + +C+  K  + A      + +  +P   ++  
Sbjct: 252 IDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTT 311

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157
           ++S    S     AF     +   G+  D  L TT++    K+GK     E+F  ++   
Sbjct: 312 IISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLN 371

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + PN  TY AL+DG  K G V  A      M  ++V P+ V F+++I    + G +++A 
Sbjct: 372 LVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAV 431

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
           +VL +M      + P+      L+      GQ + A   YK +  + ++    ++ I +N
Sbjct: 432 EVLRKMVQ--MNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLN 489

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
              ++G  + A S+  D+  KG+  D    S+L+D     G   AA  ++QE   + +  
Sbjct: 490 NLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQF 549

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
            +++Y++L         ++    ++  M  + L P   T N+++       +    +++L
Sbjct: 550 DVVAYNALTKGLLRLGKYEPK-SVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLL 608

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           ++MKS G+ PN +TY+IL+    +   +E  + +L +    G +P  ++ K ++   SR 
Sbjct: 609 NEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRS 668

Query: 458 YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517
            +    L  H         ++ +   +L  MVY   I             VL  L +   
Sbjct: 669 RKADAILQIH--------KKLVDMGLNLNQMVYNTLIT------------VLCRLGMTKK 708

Query: 518 ADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVPCVS 571
           A++    +   G+SAD +  +   +LI G+  G +  +AF+   +    GI P ++
Sbjct: 709 ANVVLTEMVIKGISADIVTYN---ALIRGYCTGSHVEKAFNTYSQMLVSGISPNIT 761



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 128/541 (23%), Positives = 229/541 (42%), Gaps = 68/541 (12%)

Query: 14  PNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL---LDMDKVYHARFFNV 70
           PN  H +Y   +S        L++ GR+ E  +    M  +G+   L +        F  
Sbjct: 304 PN--HVSYTTIISA-------LLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKA 354

Query: 71  CKSQKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            KS++A +E F+   KL   P   T+  L+       D E A  VL+ +++  +  +   
Sbjct: 355 GKSKEA-EEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVT 413

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           ++++I   AK G ++   EV  +MV   I PNV  Y  L+DG  + GQ   A G Y  M+
Sbjct: 414 FSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMK 473

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
           S  ++ + ++F+ L+    +SG +  A  ++ ++ ++   +  D     +LM      G 
Sbjct: 474 SWGLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSK--GIYLDVFNYSSLMDGYFKEGN 531

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
              A  V + + + +++     Y        + G +E   SV+  M + G+ PD V  ++
Sbjct: 532 ESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYE-PKSVFSRMIELGLTPDCVTYNS 590

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           +++     GK E A ++L E K+ G+   +++Y+ L+G        +K + +   M ++ 
Sbjct: 591 VMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVG 650

Query: 370 LKPT---------------------------------VSTM--NALITALCDGDQLPKTM 394
             PT                                 ++ M  N LIT LC      K  
Sbjct: 651 YVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKAN 710

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
            VL++M   G+  + +TY+ L+        VE      SQ    G+ PN+  +  ++ G+
Sbjct: 711 VVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGL 770

Query: 454 CS----RRYEK------ARTLNEHVLSFN---SGRPQIENKWTSLALMVYREAIVAGTIP 500
            +    R  +K       R L  +  ++N   SG  ++ NK  S+ L  Y E I  G IP
Sbjct: 771 STNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKL--YCEMITKGFIP 828

Query: 501 T 501
           T
Sbjct: 829 T 829



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 179/423 (42%), Gaps = 9/423 (2%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK--LVPNPTLST 94
           R G+        ++M+  GL + + ++     N  K    +KEA    K  L     L  
Sbjct: 458 RTGQHEAAAGFYKEMKSWGLEENNIIFDI-LLNNLKRSGGMKEAQSLIKDILSKGIYLDV 516

Query: 95  FNM--LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           FN   LM       +   A  V++ + E  ++ D   Y  L     + GK +    VF  
Sbjct: 517 FNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGKYEPK-SVFSR 575

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M+  G+ P+  TY ++++     G+   A      M+S  V P+ V +N LI    ++GA
Sbjct: 576 MIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGGLCKTGA 635

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +++   VL EM A  +   P  I    L+KA + + + D   +++K +    +     VY
Sbjct: 636 IEKVISVLHEMLAVGYV--PTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVY 693

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I    + G  + A  V  +M  KG+  D V  +ALI        VE AF    +   
Sbjct: 694 NTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLV 753

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            GIS  I +Y++L+   S     + A +L   M+   L P  +T N L++          
Sbjct: 754 SGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRD 813

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 451
           ++++  +M + G  P T TY++L+    +   +     LL++    G IPN   +  +I 
Sbjct: 814 SIKLYCEMITKGFIPTTGTYNVLIQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLIC 873

Query: 452 GMC 454
           G C
Sbjct: 874 GWC 876



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 170/382 (44%), Gaps = 23/382 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVL------RLVQEAGLKADCKL-------------- 129
           P + T+N L++      D   A  V+      R   E+G+  DC +              
Sbjct: 178 PDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVV 237

Query: 130 -YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
            +TTLI    K   +D  F ++ +M+ +G+ P+V T  +++ G  + G++ +A      M
Sbjct: 238 TWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREM 297

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
            +  + P+ V +  +I+A  +SG V  AF+  ++M   V  +  D +    +M     AG
Sbjct: 298 YNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQM--VVRGISIDLVLCTTMMDGLFKAG 355

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           +   A E+++ I K N+      YT  ++   + GD EFA +V   M K+ V+P+ V  S
Sbjct: 356 KSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFS 415

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           ++I+     G +  A E+L++     I   +  Y+ L+         + A   Y+ MKS 
Sbjct: 416 SIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSW 475

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            L+      + L+  L     + +   ++ D+ S G+  +   YS L+    ++ +    
Sbjct: 476 GLEENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAA 535

Query: 429 LMLLSQAKEDGVIPNLVMFKCI 450
           L ++ +  E  +  ++V +  +
Sbjct: 536 LSVVQEMTEKDMQFDVVAYNAL 557



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/457 (20%), Positives = 197/457 (43%), Gaps = 14/457 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N   ++G +++ +++L  M +  ++    VY        ++ +  + A  F+K + +  L
Sbjct: 419 NGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQH-EAAAGFYKEMKSWGL 477

Query: 93  STFNMLMSVCASSKDSEGAFQ----VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
              N++  +  ++    G  +    +++ +   G+  D   Y++L+    K G   A   
Sbjct: 478 EENNIIFDILLNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYFKEGNESAALS 537

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  EM    ++ +V  Y AL  G  + G+       +  M    + PD V +N+++    
Sbjct: 538 VVQEMTEKDMQFDVVAYNALTKGLLRLGKYEPK-SVFSRMIELGLTPDCVTYNSVMNTYF 596

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G  + A D+L EM +  + V P+ +T   L+      G +++   V   +       T
Sbjct: 597 IQGKTENALDLLNEMKS--YGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPT 654

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
           P ++   +   S++   +    ++  +   G+  +++  + LI      G  + A  +L 
Sbjct: 655 PIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLT 714

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E   +GIS  I++Y++L+       + +KA   Y  M    + P ++T NAL+  L    
Sbjct: 715 EMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNG 774

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            +    +++S+M+  GL PN  TY+IL+    R  +    + L  +    G IP    + 
Sbjct: 775 LMRDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYN 834

Query: 449 CIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT 483
            +I   ++  +  +AR L   +L+    R +I N  T
Sbjct: 835 VLIQDYAKAGKMRQARELLNEMLT----RGRIPNSST 867



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 157/365 (43%), Gaps = 37/365 (10%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           Y T++    K G  D  F +  EMV  G+  +  T   L+ G  + G V  A    G + 
Sbjct: 78  YNTVVWGFCKRGLADQGFGLLSEMVKKGVCFDSVTCNILVKGYCQIGLVQYAEWIMGNLV 137

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
              V  D +  N L+    + G V RA D++ +     + V PD +T   L+ A    G 
Sbjct: 138 GGGVPLDAIGLNTLVDGYCEVGLVSRALDLVED--GWKNGVKPDIVTYNTLVNAFCKRGD 195

Query: 250 VDRAREVYKMIHKY---------------------NIKGTPEVYTIAINC-CSQTGDWEF 287
           + +A  V   I  +                     +++ T   +T  I   C   G  +F
Sbjct: 196 LAKAESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDF 255

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
             S+Y+ M   GV+PD V  S+++      GK+  A  +L+E  N G+    +SY++++ 
Sbjct: 256 F-SLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIIS 314

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG----DQLPKTMEVLSDMKSL 403
           A   +    + +E + H   + ++  +S    L T + DG     +  +  E+   +  L
Sbjct: 315 ALLKSG---RVMEAFNHQSQMVVRG-ISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKL 370

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 463
            L PN +TY+ LL    +  DVE    +L + +++ V+PN+V F  II      Y K   
Sbjct: 371 NLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSII----NGYAKKGM 426

Query: 464 LNEHV 468
           LN+ V
Sbjct: 427 LNKAV 431



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 104/488 (21%), Positives = 202/488 (41%), Gaps = 48/488 (9%)

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
            G+  D     TL+    + G V    ++  +    G++P++ TY  L++   K G +AK
Sbjct: 139 GGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTYNTLVNAFCKRGDLAK 198

Query: 181 AFGA----YGIMRS-----------------KNVKPDRVVFNALITACGQSGAVDRAFDV 219
           A        G  R                  ++++P  V +  LI A  +   +D  F +
Sbjct: 199 AESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWTTLIAAYCKHRGIDDFFSL 258

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
             +M   +  V PD +T  +++      G++  A  + + ++   +      YT  I+  
Sbjct: 259 YEQM--IMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISAL 316

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            ++G    A +    M  +G+  D V  + ++D    AGK + A E+ Q      +    
Sbjct: 317 LKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKLNLVPNC 376

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
           ++Y++L+       + + A  + + M+   + P V T +++I        L K +EVL  
Sbjct: 377 VTYTALLDGHCKVGDVEFAETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRK 436

Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR-- 457
           M  + + PN   Y+ILL    R    E       + K  G+  N ++F  ++    R   
Sbjct: 437 MVQMNIMPNVFVYAILLDGYFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGG 496

Query: 458 YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV-EVVSKVLGCLQLPY 516
            ++A++L + +LS   G       ++SL    ++E   +  +  V E+  K +    + Y
Sbjct: 497 MKEAQSLIKDILS--KGIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAY 554

Query: 517 NA--------------DIRERLVENLGVSADALKRSNLCS--LIDGFGEYDPRAFSLLEE 560
           NA               +  R++E LG++ D +  +++ +   I G  E    A  LL E
Sbjct: 555 NALTKGLLRLGKYEPKSVFSRMIE-LGLTPDCVTYNSVMNTYFIQGKTE---NALDLLNE 610

Query: 561 AASFGIVP 568
             S+G++P
Sbjct: 611 MKSYGVMP 618



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 141/343 (41%), Gaps = 36/343 (10%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           L+  L+     SG V  +  ++ EMV  G+ PNV +   L+    K G +  A G     
Sbjct: 12  LWNDLLYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLALGYL--- 68

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
             +N   D V +N ++    + G  D+ F +L+EM  +   V  D +T   L+K     G
Sbjct: 69  --RNSVFDHVTYNTVVWGFCKRGLADQGFGLLSEMVKK--GVCFDSVTCNILVKGYCQIG 124

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCC----SQTGDWEFACSVYDDMTKKGVIPDE 304
            V  A  +   +    + G   +  I +N       + G    A  + +D  K GV PD 
Sbjct: 125 LVQYAEWIMGNL----VGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDI 180

Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKN---------------------QGISVGIISYS 343
           V  + L++     G +  A  ++ E                        + +   +++++
Sbjct: 181 VTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVTWT 240

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +L+ A    +       LYE M    + P V T ++++  LC   +L +   +L +M ++
Sbjct: 241 TLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNM 300

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
           GL PN ++Y+ ++ A  +   V       SQ    G+  +LV+
Sbjct: 301 GLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVL 343



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 117/294 (39%), Gaps = 39/294 (13%)

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           MR+ ++ P   ++N L+     SG V +   + +EM   +  V P+  ++  L+ +    
Sbjct: 1   MRALSLVPSLPLWNDLLYEFNASGFVSQVKVLYSEM--VLCGVVPNVFSVNLLVHSLCKV 58

Query: 248 GQVDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
           G +  A       V+  +  YN        T+    C + G  +    +  +M KKGV  
Sbjct: 59  GDLGLALGYLRNSVFDHV-TYN--------TVVWGFCKR-GLADQGFGLLSEMVKKGVCF 108

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362
           D V  + L+      G V+ A  I+      G+ +  I  ++L+          +AL+L 
Sbjct: 109 DSVTCNILVKGYCQIGLVQYAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLV 168

Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL------------------- 403
           E      +KP + T N L+ A C    L K   V++++                      
Sbjct: 169 EDGWKNGVKPDIVTYNTLVNAFCKRGDLAKAESVVNEILGFRRDDESGVLNDCGVETWDG 228

Query: 404 --GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
              L P  +T++ L+ A  +   ++    L  Q    GV+P++V    I+ G+C
Sbjct: 229 LRDLQPTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLC 282


>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
 gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
          Length = 866

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 202/450 (44%), Gaps = 42/450 (9%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK--------LVP 88
           ++G + E   L+E M  +GL      ++AR   +CK+ + + +A+R F+         +P
Sbjct: 219 KEGLVEEAERLVERMRVQGLAPNVVTFNARISALCKAGRVL-DAYRIFQDMQEDWQHGLP 277

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   TF++++S    +   + A  ++ +++  G     + Y   ++   ++G+V    E
Sbjct: 278 RPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVRNGRVGEAQE 337

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM + GI+PN +TY  ++ G  K G+   A      +RS  + PD V + +L+ A  
Sbjct: 338 LLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYC 397

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 267
             G +  A  +L EM  +     P+  T   L+++   AG   R  E  +++ + N KG 
Sbjct: 398 SKGNIAAANRILDEMAQK--GCAPNSFTYNVLLQSLWRAG---RTTEAERLLERMNEKGY 452

Query: 268 ---TPEVYTIAINCCSQT----------GDWE------------FACSVYDDMTKKGVIP 302
              T     I    C  +          G WE            F   V D    +  +P
Sbjct: 453 SLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLP 512

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 361
           D++  S LI      G+ + A + L E   + IS   + Y + + G C + K    A+++
Sbjct: 513 DQITYSILISALCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKT-SLAIKV 571

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
              M+     P+  T N LI    +  +  + M+++S+MK  G+ PN +TY+ L+ +  +
Sbjct: 572 LRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQ 631

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  V   + LL +  ++ ++PN+  F  +I
Sbjct: 632 QGMVNKAMPLLDEMLQNELVPNITSFDLLI 661



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 156/397 (39%), Gaps = 59/397 (14%)

Query: 27  EQLHSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
            ++ SYNR    L+R GR+ E  +LL +M  +G+                          
Sbjct: 314 RRVESYNRWLSGLVRNGRVGEAQELLREMAHEGI-------------------------- 347

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                  P   T+N+++S       +  A +V   ++   +  D   YT+L+      G 
Sbjct: 348 ------QPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGN 401

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           + A   +  EM   G  PN  TY  L+    +AG+  +A      M  K    D    N 
Sbjct: 402 IAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNI 461

Query: 203 LITACGQSGAVDRAFDVLAEM------------NAEVHPVD---------PDHITIGALM 241
           +I    ++  +D A D++  M            N+ +  V          PD IT   L+
Sbjct: 462 IIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILI 521

Query: 242 KACANAGQVDRARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
            A    G+ D A++ + +MI K +I     +Y   I+   + G    A  V  DM KKG 
Sbjct: 522 SALCKEGRFDEAKKKLLEMIVK-DISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGC 580

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
            P     + LI       K E   +++ E K +GIS  +++Y+SL+ +        KA+ 
Sbjct: 581 NPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMP 640

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
           L + M   +L P +++ + LI A C     P    V 
Sbjct: 641 LLDEMLQNELVPNITSFDLLIKAYCKITDFPSAQMVF 677



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 128/581 (22%), Positives = 233/581 (40%), Gaps = 79/581 (13%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLD--MDKVYHARFF--NVCKSQKAIKEAFRFFKLV 87
           YNRLI        +DL+E + +  LL      V+        +C + + ++ A R F  +
Sbjct: 113 YNRLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQALCDAGR-MELAQRVFDAM 171

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P     +F +L      +  S  A +VL  +    L     +  T++    K G V+   
Sbjct: 172 PARNEFSFGILARGYCRAGRSIDALKVLDGMPSMNLV----VCNTVVAGFCKEGLVEEAE 227

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN----VKPDRVVFNAL 203
            +   M   G+ PNV T+ A I    KAG+V  A+  +  M+        +PD+V F+ +
Sbjct: 228 RLVERMRVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVM 287

Query: 204 ITACGQSGAVDRAFDVLAEMN--AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           ++    +G VD A  ++  M     +  V+  +  +  L++     G+V  A+E+ + + 
Sbjct: 288 LSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLVR----NGRVGEAQELLREMA 343

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKV 320
              I+     Y I ++   + G   F     ++  + GV+ PD V  ++L+      G +
Sbjct: 344 HEGIQPNSYTYNIIVSGLCKEGK-AFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNI 402

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
            AA  IL E   +G +    +Y+ L+ +   A    +A  L E M         +  N +
Sbjct: 403 AAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNII 462

Query: 381 ITALCDGDQLPKTMEVLSDMKSLG-----------------------LCPNTITYSILLV 417
           I  LC   +L   M+++  M   G                         P+ ITYSIL+ 
Sbjct: 463 IDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVSDSSISQRCLPDQITYSILIS 522

Query: 418 A-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGR 475
           A C+     E    LL    +D + P+ V++   I G C                     
Sbjct: 523 ALCKEGRFDEAKKKLLEMIVKD-ISPDSVIYDTFIHGYC--------------------- 560

Query: 476 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSA 532
              ++  TSLA+ V R+    G  P+    + ++   +  + ++   +L+  +   G+S 
Sbjct: 561 ---KHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISP 617

Query: 533 DALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCVS 571
           + +  +   SLI  F +     +A  LL+E     +VP ++
Sbjct: 618 NVMTYN---SLIKSFCQQGMVNKAMPLLDEMLQNELVPNIT 655



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 152/365 (41%), Gaps = 44/365 (12%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           AF+ LR +  A       +Y  LI    +  ++D +  ++ +++ +G +P+V T   L+ 
Sbjct: 95  AFRSLRALTSAP-PPTTPVYNRLILAALRESRLDLVEALYKDLLLSGAQPDVFTRNLLLQ 153

Query: 171 GCAKAGQV---AKAFGA--------YGIMRSKNVKPDR----------------VVFNAL 203
               AG++    + F A        +GI+     +  R                VV N +
Sbjct: 154 ALCDAGRMELAQRVFDAMPARNEFSFGILARGYCRAGRSIDALKVLDGMPSMNLVVCNTV 213

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           +    + G V+ A  ++  M   V  + P+ +T  A + A   AG+V  A  +++ + + 
Sbjct: 214 VAGFCKEGLVEEAERLVERM--RVQGLAPNVVTFNARISALCKAGRVLDAYRIFQDMQED 271

Query: 264 NIKGTPE----VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAG 315
              G P      + + ++     G  + A  + D M   G +        +LS L+    
Sbjct: 272 WQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYNRWLSGLV---- 327

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTV 374
             G+V  A E+L+E  ++GI     +Y+ ++ G C   K +  A  +   ++S  + P V
Sbjct: 328 RNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFD-ARRVENFIRSGVMSPDV 386

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T  +L+ A C    +     +L +M   G  PN+ TY++LL +  R         LL +
Sbjct: 387 VTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLER 446

Query: 435 AKEDG 439
             E G
Sbjct: 447 MNEKG 451



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 18/178 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L ++GR  E    L +M  K +     +Y       CK  K   AIK      K   NP+
Sbjct: 524 LCKEGRFDEAKKKLLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPS 583

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+N+L+        SE   +++  ++E G+  +   Y +LI +  + G V+    +  
Sbjct: 584 TRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIKSFCQQGMVNKAMPLLD 643

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           EM+   + PN+ ++  LI    K      A               ++VF+A +  CGQ
Sbjct: 644 EMLQNELVPNITSFDLLIKAYCKITDFPSA---------------QMVFDAALRTCGQ 686


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 165/360 (45%), Gaps = 4/360 (1%)

Query: 94  TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           T+N L+S +C   K SE A  + + + + GL      Y ++I    + G +D    VF +
Sbjct: 455 TYNSLLSWLCKEGKMSE-ATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSD 513

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M++ G++PNV TY  L+DG  K G    AF  +  M  +N+ P    +N  I    + G 
Sbjct: 514 MLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGR 573

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
              A D+L +   E   V P  +T  ++M      G V  A   Y+ + +  +      Y
Sbjct: 574 TSEAQDMLKKF-VEKGFV-PVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITY 631

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T  IN   +  + + A  + ++M  KG+  D     ALID       +E A  +  E  +
Sbjct: 632 TTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLD 691

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+S   + Y+SL+    N  N + AL L + M    +   + T   LI  L    +L  
Sbjct: 692 GGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVL 751

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            +++ S+M + G+ P+ I Y++L+     K  +E    +L++ + D + PN+ ++  +I 
Sbjct: 752 ALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIA 811



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/469 (21%), Positives = 190/469 (40%), Gaps = 48/469 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P+  TF  ++  C    +   A ++   +   G++ +  + TTL+    K  K+ +  E 
Sbjct: 312 PSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEF 371

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI----- 204
           F +M   G  PN  TY  LI+ C K G +AKA+  Y  M++KN+ P   + N+LI     
Sbjct: 372 FDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLK 431

Query: 205 --------------TACG---------------QSGAVDRAFDVLAEMNAEVHPVDPDHI 235
                          AC                + G +  A  +  +M  +   + P  +
Sbjct: 432 VESREEASKLFDEAVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKMLDK--GLAPTKV 489

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           +  +++      G +D A  V+  +    +K     Y+I ++   + GD E+A  V+D M
Sbjct: 490 SYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRM 549

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
             + ++P +   +  I+     G+   A ++L++   +G     ++Y+S+M       + 
Sbjct: 550 VDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSV 609

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
             AL  Y  M    + P V T   LI   C  +     +++ ++M++ GL  +   Y  L
Sbjct: 610 SSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGAL 669

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 475
           +    +K D+E    L S+  + G+ PN V++  +I            LN        G 
Sbjct: 670 IDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGI 729

Query: 476 PQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVLGCL 512
                 +T+            LAL +Y E    G IP + + + ++  L
Sbjct: 730 SCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGL 778



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 168/402 (41%), Gaps = 44/402 (10%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            + +YN L+    ++G++SE   L + M  KGL      Y++     C+       A  F
Sbjct: 452 NIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAASVF 511

Query: 84  FKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKAD------------- 126
             ++     P + T+++LM     + D+E AF V  R+V E  + +D             
Sbjct: 512 SDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGLCKV 571

Query: 127 ---------------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165
                                C  Y +++    K G V +    + EM  +G+ PNV TY
Sbjct: 572 GRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNVITY 631

Query: 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225
             LI+G  K      A      MR+K ++ D   + ALI    +   ++ A  + +E+  
Sbjct: 632 TTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELLD 691

Query: 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285
               + P+ +   +L+    N   ++ A  + K +    I    + YT  I+   + G  
Sbjct: 692 --GGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRL 749

Query: 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345
             A  +Y +M+ KG+IPD +  + LI+     G++E A +IL E +   I+  +  Y++L
Sbjct: 750 VLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNAL 809

Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           +     A N Q+A  L+  M    L P  +T + LI     G
Sbjct: 810 IAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKG 851



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/431 (20%), Positives = 185/431 (42%), Gaps = 17/431 (3%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + E    Y +++ +G   +C  +   M R  L D ++    +FF   KS+    +A    
Sbjct: 225 IYEAREVYEKMVLKGVHGDCFTV-HIMMRANLKDNNEEEAKKFFLEAKSRGVKLDA---- 279

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                   + +++++     + D E A  +L+ +++ G       +T++I  C K G + 
Sbjct: 280 --------AAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMV 331

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               +  EMV+ G++ NV     L+ G  K  ++  A   +  M      P+RV +  LI
Sbjct: 332 EALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVLI 391

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
             C ++G + +A+D+  +M  +   + P    + +L++        + A +++      +
Sbjct: 392 EWCCKNGNMAKAYDLYTQMKNK--NICPTVFIVNSLIRGFLKVESREEASKLFDEAVACD 449

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           I      Y   ++   + G    A +++  M  KG+ P +V  +++I      G ++ A 
Sbjct: 450 IANI-FTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGNLDMAA 508

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +  +  + G+   +I+YS LM       + + A  +++ M    + P+  T N  I  L
Sbjct: 509 SVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFDRMVDENIVPSDFTYNIKINGL 568

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           C   +  +  ++L      G  P  +TY+ ++    ++  V   L    +  E GV PN+
Sbjct: 569 CKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTAYREMCESGVSPNV 628

Query: 445 VMFKCII-GMC 454
           + +  +I G C
Sbjct: 629 ITYTTLINGFC 639



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 115/488 (23%), Positives = 186/488 (38%), Gaps = 53/488 (10%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT-- 164
           D+ G F   RLV E+ +    K    L+T   K+  +    EV+ +MV  G+  +  T  
Sbjct: 192 DAIGCFN--RLV-ESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVH 248

Query: 165 ---------------------------------YGALIDGCAKAGQVAKAFGAYGIMRSK 191
                                            Y  +I    K   V  A G    MR K
Sbjct: 249 IMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDK 308

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
              P    F ++I AC + G +  A  +  EM +    V  + +    L+K      ++ 
Sbjct: 309 GWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVS--CGVQMNVVVATTLVKGYCKQDKLV 366

Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
            A E +  +++         Y + I  C + G+   A  +Y  M  K + P    +++LI
Sbjct: 367 SALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLI 426

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
                    E A ++  EA    I+  I +Y+SL+          +A  L++ M    L 
Sbjct: 427 RGFLKVESREEASKLFDEAVACDIA-NIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLA 485

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           PT  + N++I   C    L     V SDM   GL PN ITYSIL+    +  D E    +
Sbjct: 486 PTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYV 545

Query: 432 LSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHV--------LSFNSGRPQ-IE 479
             +  ++ ++P+   +   I G+C   R  E    L + V        L++NS     I+
Sbjct: 546 FDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIK 605

Query: 480 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN 539
               S AL  YRE   +G  P V   + ++       N D+  ++   +      L  + 
Sbjct: 606 EGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAA 665

Query: 540 LCSLIDGF 547
             +LIDGF
Sbjct: 666 YGALIDGF 673



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 149/370 (40%), Gaps = 52/370 (14%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
            + ++  Y  L++   KA ++  A G +  +   ++ P     N L+TA  ++  +  A 
Sbjct: 170 FDSDIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAR 229

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277
           +V  +M   +  V  D  T+  +M+A       + A++ +       +K     Y+I I 
Sbjct: 230 EVYEKM--VLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQ 287

Query: 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
              +  D E AC +  DM  KG +P E                                 
Sbjct: 288 AFCKNLDVELACGLLKDMRDKGWVPSEG-------------------------------- 315

Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397
              +++S++GAC    N  +AL L + M S  ++  V     L+   C  D+L   +E  
Sbjct: 316 ---TFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFF 372

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MC 454
             M   G  PN +TY++L+  C +  ++     L +Q K   + P + +   +I      
Sbjct: 373 DKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKV 432

Query: 455 SRRYEKARTLNE-------HVLSFNSGRPQI--ENKWTSLALMVYREAIVAGTIPT-VEV 504
             R E ++  +E       ++ ++NS    +  E K  S A  ++++ +  G  PT V  
Sbjct: 433 ESREEASKLFDEAVACDIANIFTYNSLLSWLCKEGK-MSEATTLWQKMLDKGLAPTKVSY 491

Query: 505 VSKVLG-CLQ 513
            S +LG C Q
Sbjct: 492 NSMILGHCRQ 501



 Score = 47.8 bits (112), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 36/159 (22%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  L +Y  LI    ++GR+   +DL  +M  KG++                       
Sbjct: 729 ISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGII----------------------- 765

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P +  + +L++        E A ++L  ++   +  +  +Y  LI    K+
Sbjct: 766 ---------PDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKA 816

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           G +   F + +EM++ G+ PN  TY  LI+G  K G  A
Sbjct: 817 GNLQEAFRLHNEMLDKGLTPNDTTYDILINGKIKGGNSA 855



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 36/196 (18%), Positives = 84/196 (42%), Gaps = 1/196 (0%)

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           +++      +Y   +N   +      A   ++ + +  ++P   FL+ L+        + 
Sbjct: 167 RFDFDSDIRIYNYLLNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIY 226

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
            A E+ ++   +G+     +   +M A     N ++A + +   KS  +K   +  + +I
Sbjct: 227 EAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVI 286

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            A C    +     +L DM+  G  P+  T++ ++ AC ++ ++   L L  +    GV 
Sbjct: 287 QAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQ 346

Query: 442 PNLVMFKCII-GMCSR 456
            N+V+   ++ G C +
Sbjct: 347 MNVVVATTLVKGYCKQ 362


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 144/308 (46%), Gaps = 4/308 (1%)

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182
            + D   YTT+I    ++ +  A+ ++  +M+  G +PNV TY  +I    +A  +  A 
Sbjct: 375 FRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAV 434

Query: 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
             +  M+    +PDRV +  LI    +SG +D A  +  +M  +   + PD  T   ++ 
Sbjct: 435 NVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKM--QDAGLTPDTFTYSVMIN 492

Query: 243 ACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
               AG ++ A  ++ +M+ +  +      Y I I   ++  ++E A  +Y DM + G  
Sbjct: 493 CLGKAGHLNAAHRLFCRMVDEGCVPNL-VTYNIMIALQAKARNYEIALKLYRDMQQSGFE 551

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD+V    +++  GH G +E A  I  E + +        Y  L+     + N QKA E 
Sbjct: 552 PDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEW 611

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           Y  M    LKP V T N+L++A     QL    ++L  M + GL P+  TY++LL  C  
Sbjct: 612 YHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTD 671

Query: 422 KDDVEVGL 429
               ++G 
Sbjct: 672 AQTNDMGF 679



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 128/264 (48%), Gaps = 2/264 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N ++     +   + A  V + +QEAG + D   Y TLI   AKSG +D    +
Sbjct: 412 PNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGM 471

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           + +M +AG+ P+  TY  +I+   KAG +  A   +  M  +   P+ V +N +I    +
Sbjct: 472 YEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAK 531

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +   + A  +  +M  +    +PD +T   +M+   + G ++ A  ++  + K N     
Sbjct: 532 ARNYEIALKLYRDM--QQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDE 589

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
            VY + ++   ++G+ + A   Y  M K G+ P+    ++L+       ++  A+++LQ 
Sbjct: 590 PVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQS 649

Query: 330 AKNQGISVGIISYSSLMGACSNAK 353
               G+   + +Y+ L+  C++A+
Sbjct: 650 MLTFGLKPSLQTYTLLLSCCTDAQ 673



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 67/309 (21%), Positives = 126/309 (40%), Gaps = 45/309 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTL 92
           + G +   + + E M+  GL   D   ++   N       +  A R F ++V     P L
Sbjct: 461 KSGFLDVAMGMYEKMQDAGLTP-DTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNL 519

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-------------C------------ 127
            T+N+++++ A +++ E A ++ R +Q++G + D             C            
Sbjct: 520 VTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIE 579

Query: 128 ----------KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
                      +Y  L+    KSG V   +E +H M+ AG++PNV T  +L+    +  Q
Sbjct: 580 MQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQ 639

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
           ++ A+     M +  +KP    +  L++ C  +   D  F     M    HP    H  +
Sbjct: 640 LSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGF-CCELMQVTGHPA---HTFL 695

Query: 238 GALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
            +L  A  N   V D   +   ++H  + +    +    ++   ++G  E A  V++   
Sbjct: 696 VSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAM 755

Query: 297 KKGVIPDEV 305
           +K V PD V
Sbjct: 756 QKNVYPDAV 764



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/263 (19%), Positives = 113/263 (42%), Gaps = 8/263 (3%)

Query: 185 YGIMRSKNVKPDRVVFNALITACG---QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
           Y + R    + D   +  +I   G   Q  A+++  D + +   +     P+ +T   ++
Sbjct: 367 YWLKRLPRFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQ-----PNVVTYNRII 421

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301
            +   A  +  A  V+K + +   +     Y   I+  +++G  + A  +Y+ M   G+ 
Sbjct: 422 HSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLT 481

Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           PD    S +I+  G AG + AA  +     ++G    +++Y+ ++   + A+N++ AL+L
Sbjct: 482 PDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKL 541

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           Y  M+    +P   T   ++  L     L +   +  +M+     P+   Y +L+    +
Sbjct: 542 YRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGK 601

Query: 422 KDDVEVGLMLLSQAKEDGVIPNL 444
             +V+          + G+ PN+
Sbjct: 602 SGNVQKAWEWYHAMLKAGLKPNV 624



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 1/182 (0%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  I    +   +     + D M K G  P+ V  + +I   G A  ++ A  + ++
Sbjct: 380 HTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQ 439

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            +  G     ++Y +L+   + +     A+ +YE M+   L P   T + +I  L     
Sbjct: 440 MQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGH 499

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L     +   M   G  PN +TY+I++    +  + E+ L L    ++ G  P+ V + C
Sbjct: 500 LNAAHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTY-C 558

Query: 450 II 451
           I+
Sbjct: 559 IV 560



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 2/159 (1%)

Query: 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367
           + +I   G A +  A  ++L +    G    +++Y+ ++ +   A   Q A+ +++ M+ 
Sbjct: 383 TTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQE 442

Query: 368 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427
              +P   T   LI        L   M +   M+  GL P+T TYS+++    +   +  
Sbjct: 443 AGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNA 502

Query: 428 GLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTL 464
              L  +  ++G +PNLV +  +I +   +R YE A  L
Sbjct: 503 AHRLFCRMVDEGCVPNLVTYNIMIALQAKARNYEIALKL 541


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 154/352 (43%), Gaps = 13/352 (3%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
           E    V R ++E G+      Y  L+     S  +++  +VF  M    I P+  TY  +
Sbjct: 200 EELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIM 259

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           I G  KAG++ KA   +  M  KNVKPD++ +  LI AC      D    +  EM     
Sbjct: 260 IKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGL 319

Query: 229 PVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTG 283
            + P    + IG L K         +  E Y +    N KG      +YT  I+  S+ G
Sbjct: 320 EIPPHSYSLVIGGLCKQ-------RKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNG 372

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
             E A  +++ M  +G  PD V  S L++    +G+++   E+    +N+G+++  + Y+
Sbjct: 373 SMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYA 432

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           SL+     A   + A  L+E M            NA+I AL    ++ + + +   M+  
Sbjct: 433 SLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEE 492

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMC 454
           G      T++IL+    ++   E  +    +  + G+ P +  F+ + IG+C
Sbjct: 493 GCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLC 544



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 155/336 (46%), Gaps = 4/336 (1%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K+VP+    T+N+++     +   + A +  R ++   +K D   Y TLI  C      D
Sbjct: 248 KIVPDTV--TYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFD 305

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
               ++ EM   G+E   H+Y  +I G  K  +  +A+  +  M  K  + +  ++ ALI
Sbjct: 306 TCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALI 365

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            +  ++G+++ A  +   M  E    +PD +T   L+     +G++D   E++       
Sbjct: 366 DSYSKNGSMEEAMRLFERMKNE--GFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKG 423

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           +      Y   I+   + G  E A +++++M++KG   D    +A+ID     GK++ A 
Sbjct: 424 VAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQAL 483

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
            +    + +G    + +++ L+         ++A++ ++ M    + PTV++  AL   L
Sbjct: 484 ALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 543

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           C   ++ +  ++L D+  +G+ P T    ++   C+
Sbjct: 544 CLCGKVARACKILDDLAPMGIIPETAFEDMINTLCK 579



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 148/347 (42%), Gaps = 18/347 (5%)

Query: 44  CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM 99
           C+ L  +ME +GL      Y      +CK +K + EA+  F+ +        ++ +  L+
Sbjct: 307 CLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCM-EAYAVFETMNQKGCRANVAIYTALI 365

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
              + +   E A ++   ++  G + D   Y+ L+    KSG++D   E+F    N G+ 
Sbjct: 366 DSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVA 425

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
            N   Y +LIDG  KAG++  A   +  M  K    D   +NA+I A  + G +D+A  +
Sbjct: 426 INAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALAL 485

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINC 278
              M  E    D    T   L+       + + A + + KMI K           +AI  
Sbjct: 486 FGRMEEE--GCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGL 543

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
           C   G    AC + DD+   G+IP+  F   +I+    A +++ A ++     ++G  + 
Sbjct: 544 C-LCGKVARACKILDDLAPMGIIPETAF-EDMINTLCKAQRIKEACKLADGIVDRGREIP 601

Query: 339 IISYSSLMGACSNAKNWQKALEL--------YEHMKSIKLKPTVSTM 377
               + L+ A   A N    ++L        Y+ M SIK +    T+
Sbjct: 602 GRIRTVLINALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTL 648



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 114/270 (42%), Gaps = 4/270 (1%)

Query: 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260
           N+LI + G  G V+    V   M    + +DP   T   L+    N+  ++ A +V++++
Sbjct: 187 NSLIKSFGNLGLVEELLWVWRRMKE--NGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVM 244

Query: 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
               I      Y I I    + G  + A   + DM  K V PD++    LI         
Sbjct: 245 DGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDF 304

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           +    +  E + +G+ +   SYS ++G     +   +A  ++E M     +  V+   AL
Sbjct: 305 DTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTAL 364

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I +      + + M +   MK+ G  P+ +TYS+L+    +   ++ G+ L    +  GV
Sbjct: 365 IDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGV 424

Query: 441 IPNLVMFKCIIGMCSR--RYEKARTLNEHV 468
             N + +  +I    +  R E A  L E +
Sbjct: 425 AINAMFYASLIDGLGKAGRIEDAENLFEEM 454



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 1/168 (0%)

Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
           V+ ++  +G++  E   ++LI   G+ G VE    + +  K  GI   + +Y+ L+    
Sbjct: 170 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 229

Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
           N+   + A +++E M   K+ P   T N +I   C   +L K ME   DM+   + P+ I
Sbjct: 230 NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKI 289

Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGV-IPNLVMFKCIIGMCSRR 457
           TY  L+ AC  + D +  L L  + +E G+ IP       I G+C +R
Sbjct: 290 TYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQR 337


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 167/397 (42%), Gaps = 15/397 (3%)

Query: 90  PTLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           PT  ++N ++  C     D        R + + GL  D K + +L+  C++ G ++    
Sbjct: 14  PTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAACSRVGHLEDARA 73

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF EM++ GI  +++TY   ID   K G +  A      M +K VKP+ V ++ LI    
Sbjct: 74  VFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYS 133

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           +    + A  +  +M +    +  D +    L+     AG+      V   + +  I+  
Sbjct: 134 KLEKYEEALKLCEKMKS--MRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKD 191

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   IN   + G  +    +  DM K+GV P  +  S LID    AG    AF +  
Sbjct: 192 TVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYL 251

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + K  G+   ++ +SS +   +     + AL L   M  + +KP V T NA+I A     
Sbjct: 252 DFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSK 311

Query: 389 QLPKTMEVLSDMKSLGLCPNTIT----------YSILLVACERKDDVEVGLMLLSQAKED 438
            + +    + DM  +G+    I            S   V   R  ++   L L  +  + 
Sbjct: 312 VMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQ 371

Query: 439 GVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNS 473
           GV PN+V F  I+  CSR   +E A  L E +  F++
Sbjct: 372 GVRPNVVTFSAILNACSRCNSFEDAALLLEQLRLFDN 408



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 178/404 (44%), Gaps = 16/404 (3%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVC 102
           +LE M+  GL      Y+A      K    ++    +F+ +      P   TFN L++ C
Sbjct: 3   VLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAAC 62

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
           +     E A  V   +   G+  D   Y T I    K G ++   +V  +M   G++PNV
Sbjct: 63  SRVGHLEDARAVFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNV 122

Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
            TY  LIDG +K  +  +A      M+S  ++ DRV +N L+    ++G      +V  E
Sbjct: 123 VTYSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDE 182

Query: 223 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282
           M  E   ++ D +T  +L+      G++D    + + + K  +  +   Y+  I+  S+ 
Sbjct: 183 M--EELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKA 240

Query: 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342
           G    A +VY D  + G+ PD V  S+ ID     G +E A  +L +    GI   +++Y
Sbjct: 241 GMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTY 300

Query: 343 SSLMGACSNAKNWQKALELYEHM--------KSIKLKPTVST--MNALITALCDGDQLPK 392
           ++++ A   +K   +       M        + +++   VS    +A    +    +L  
Sbjct: 301 NAIIDAFGKSKVMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFF 360

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
            +E+   M   G+ PN +T+S +L AC R +  E   +LL Q +
Sbjct: 361 ILELFQKMVQQGVRPNVVTFSAILNACSRCNSFEDAALLLEQLR 404



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 125/265 (47%), Gaps = 3/265 (1%)

Query: 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247
           M+   ++P  V +NA+I ACG+ G VD  F +          + PD  T  +L+ AC+  
Sbjct: 7   MKGAGLRPTTVSYNAVIDACGK-GGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAACSRV 65

Query: 248 GQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           G ++ AR V+ +MIH   I      Y   I+   + G+ E A  V  DM  KGV P+ V 
Sbjct: 66  GHLEDARAVFDEMIH-LGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVT 124

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            S LID      K E A ++ ++ K+  I +  + Y++L+     A  + +   + + M+
Sbjct: 125 YSTLIDGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEME 184

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
            + ++    T N+LI       +L     ++ DM+  G+ P+ +TYS L+    +     
Sbjct: 185 ELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHG 244

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCII 451
               +    KE G+ P++V+F   I
Sbjct: 245 DAFNVYLDFKESGLKPDVVLFSSFI 269



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 176/410 (42%), Gaps = 38/410 (9%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +   +++YN  I    + G +   + +L DME KG+      Y        K +K  +EA
Sbjct: 83  IGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEK-YEEA 141

Query: 81  FRFFKLVPNPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            +  + + +  +      +N L+++   +        V   ++E G++ D   Y +LI  
Sbjct: 142 LKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLING 201

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             K G++D +  +  +M   G+ P+V TY  LID  +KAG    AF  Y   +   +KPD
Sbjct: 202 YGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPD 261

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG-QVDRARE 255
            V+F++ I    ++G ++ A  +L +M      + P+ +T  A++ A   +   ++   E
Sbjct: 262 VVLFSSFIDTLAKNGLIEWALSLLNDMTE--MGIKPNVVTYNAIIDAFGKSKVMMEDDSE 319

Query: 256 VYKMIHKYNIKGTPEVYTIAI----NCCSQTG------------DWEFACSVYDDMTKKG 299
           V  M       G   VY   I    N  S+ G            +  F   ++  M ++G
Sbjct: 320 VGDM-------GIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQG 372

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
           V P+ V  SA+++        E A  +L++ +     V  ++Y  L+G+    + W +A 
Sbjct: 373 VRPNVVTFSAILNACSRCNSFEDAALLLEQLRLFDNFVYGVAYGLLVGS---REVWSQAQ 429

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
            L+  +  +    + +  NAL   L    Q  K  +V+ +  +  +  NT
Sbjct: 430 SLFNQLGRMDSPTSSAFYNALTDVLWHFGQRRKAQQVVFEGINRRVWENT 479



 Score = 45.8 bits (107), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKD-DVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
           M VL  MK  GL P T++Y+ ++ AC +   D+   L    Q  +DG+ P+   F  ++ 
Sbjct: 1   MGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLA 60

Query: 453 MCSR--RYEKARTLNEHVLSFNSGR 475
            CSR    E AR + + ++    GR
Sbjct: 61  ACSRVGHLEDARAVFDEMIHLGIGR 85


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 168/385 (43%), Gaps = 8/385 (2%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           +L+ F ++    A   D + + ++ + +Q +   K +  ++T +IT   + G +D   EV
Sbjct: 97  SLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREV 156

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM + G+   V++Y A+I+   + GQ   +      M+ + V P  + +N +I AC +
Sbjct: 157 FDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACAR 216

Query: 210 SGA-VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
            G   +    + AEM  E   + PD IT   L+ ACA+ G  D A  V++ +++  I   
Sbjct: 217 GGLDWEGLLGLFAEMRHE--GIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPD 274

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+  +    +    E    +  +M   G +PD    + L++     G ++ A  + +
Sbjct: 275 INTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFR 334

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           + +  G      +YS L+        +    +L+  MK     P   T N LI    +G 
Sbjct: 335 QMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGG 394

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              + + +  DM    + PN  TY  L+ AC +    E    +L    E GV+P+   + 
Sbjct: 395 YFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYT 454

Query: 449 CIIGMCSRRYEKARTLNEHVLSFNS 473
            +I      + +A    E ++ FN+
Sbjct: 455 GVI----EAFGQAALYEEALVMFNT 475



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 187/438 (42%), Gaps = 11/438 (2%)

Query: 26  SEQLHSY--NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           +E +H+     L R+G + +C ++ ++M   G++     Y A   N          +   
Sbjct: 133 NEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTA-IINAYGRNGQFHASLEL 191

Query: 84  FKLVP----NPTLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
              +     +P++ T+N +++ CA    D EG   +   ++  G++ D   Y TL+  CA
Sbjct: 192 LNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACA 251

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
             G  D    VF  M  +GI P+++TY  L+    K  ++ K       M      PD  
Sbjct: 252 HRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDIT 311

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +N L+ A  + G++  A  V  +M A       +  T   L+      G+ D  R+++ 
Sbjct: 312 SYNVLLEAYAELGSIKEAMGVFRQMQAA--GCVANAATYSVLLNLYGKHGRYDDVRDLFL 369

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            +   N       Y I I    + G ++   +++ DM ++ V P+      LI   G  G
Sbjct: 370 EMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGG 429

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
             E A +IL     +G+     +Y+ ++ A   A  +++AL ++  M  +   PTV T N
Sbjct: 430 LYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYN 489

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
           +LI A   G    +   +LS M   GL  +  +++ ++ A  +    E  +    + ++ 
Sbjct: 490 SLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKA 549

Query: 439 GVIPNLVMFKCIIGM-CS 455
              PN +  + ++ + CS
Sbjct: 550 NCEPNELTLEAVLSIYCS 567



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 155/369 (42%), Gaps = 37/369 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+N L+  CA     + A  V R + E+G+  D   Y+ L+ T  K  +++ + E+
Sbjct: 238 PDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSEL 297

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G  P++ +Y  L++  A+ G + +A G +  M++     +   ++ L+   G+
Sbjct: 298 LREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGK 357

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  D   D+  EM  +V   DPD  T   L++     G       ++  + + N++   
Sbjct: 358 HGRYDDVRDLFLEM--KVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNM 415

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF----- 324
           + Y   I  C + G +E A  +   M +KGV+P     + +I+  G A   E A      
Sbjct: 416 QTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNT 475

Query: 325 ------------------------------EILQEAKNQGISVGIISYSSLMGACSNAKN 354
                                          IL      G+   + S++ ++ A      
Sbjct: 476 MNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQ 535

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
           +++A++ Y  M+    +P   T+ A+++  C    + +  E   ++K+ G+ P+ + Y +
Sbjct: 536 YEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCM 595

Query: 415 LLVACERKD 423
           +L    + D
Sbjct: 596 MLALYAKND 604



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 157/389 (40%), Gaps = 34/389 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P ++++N+L+   A     + A  V R +Q AG  A+   Y+ L+    K G+ D + ++
Sbjct: 308 PDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDL 367

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM  +  +P+  TY  LI    + G   +    +  M  +NV+P+   +  LI ACG+
Sbjct: 368 FLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGK 427

Query: 210 SGAVDRAFDVLAEMNAE-VHP--------------------------------VDPDHIT 236
            G  + A  +L  MN + V P                                 +P   T
Sbjct: 428 GGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVET 487

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296
             +L+ A A  G    A  +   +++  +K     +   I    Q G +E A   Y +M 
Sbjct: 488 YNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEME 547

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356
           K    P+E+ L A++     AG V+   E  QE K  GI   ++ Y  ++   +      
Sbjct: 548 KANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRLN 607

Query: 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME-VLSDMKSLGLCPNTITYSIL 415
            A  L + M ++++      +  +I    D +   + +E V   + S G       Y+ L
Sbjct: 608 DAYNLIDAMITMRVSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNAL 667

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNL 444
           L A       E    +L++A + G+ P L
Sbjct: 668 LEALWCMFQRERAARVLNEASKRGLFPEL 696



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 130/350 (37%), Gaps = 43/350 (12%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + GR  +  DL  +M+     D D   +     V       KE    F  +      P +
Sbjct: 357 KHGRYDDVRDLFLEMKVSNT-DPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNM 415

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+  L+  C      E A ++L  + E G+    K YT +I    ++   +    +F+ 
Sbjct: 416 QTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNT 475

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G  P V TY +LI   A+ G   +A      M    +K D   FN +I A  Q G 
Sbjct: 476 MNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQ 535

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
            + A     EM  E    +P+ +T+ A++    +AG VD   E ++ I    I  +   Y
Sbjct: 536 YEEAVKSYVEM--EKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCY 593

Query: 273 ------------------------TIAINCCSQT------GD------WEFACSVYDDMT 296
                                   T+ ++   Q       GD      W+    V+D + 
Sbjct: 594 CMMLALYAKNDRLNDAYNLIDAMITMRVSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLN 653

Query: 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346
            +G      F +AL++      + E A  +L EA  +G+   +   S L+
Sbjct: 654 SEGCGLGMRFYNALLEALWCMFQRERAARVLNEASKRGLFPELFRKSKLV 703


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 185/427 (43%), Gaps = 7/427 (1%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L  + R+SE +DL+  M   G       Y      +CKS      A    + + +   
Sbjct: 203 NGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNT-ASALDLLRKMEHRKI 261

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+ +++         + A      ++  G+KA+   Y +LI +    G+ D   +
Sbjct: 262 KPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQ 321

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M+   I PNV T+ ALID   K G++ +A   Y  M ++ ++P+ + +N+LI    
Sbjct: 322 LLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLC 381

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
               +D A  ++  M ++    DPD  T   L+     A QVD    +++ +    +   
Sbjct: 382 NDKRLDEANQMMDLMVSK--GCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIAD 439

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y+  I    Q+     A  V+ +M  +GV P  +  + L+D     G++E A  IL 
Sbjct: 440 TVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILD 499

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +     + + I  Y+ ++    NA     A  L+  + S  +K  + + N +++ LC   
Sbjct: 500 QMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRS 559

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            L +   +   MK  G  P+  TY+ L+ A  R +D+   + L+ + K  G   +    K
Sbjct: 560 SLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVK 619

Query: 449 CIIGMCS 455
            ++ M S
Sbjct: 620 IVMDMLS 626



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 167/371 (45%), Gaps = 3/371 (0%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P PT+  FN L  + A +K  +    + + ++  G+  D      +I    +  K+   F
Sbjct: 86  PLPTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAF 145

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
               ++   G EPN  T+  L++G    G+V +A      M      PD +  N ++   
Sbjct: 146 SAMGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGL 205

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
                V  A D++A M A  +   P+  T G ++     +G    A ++ + +    IK 
Sbjct: 206 CLKDRVSEAVDLIARMMA--NGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKP 263

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YTI I+   + G  + A S + +M  KG+  +    ++LI      G+ +   ++L
Sbjct: 264 HVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLL 323

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           ++   + I+  ++++S+L+ +        +A +LY  M +  ++P   T N+LI  LC+ 
Sbjct: 324 RDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCND 383

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
            +L +  +++  M S G  P+  TY+IL+    +   V+ G+ L  +    G+I + V +
Sbjct: 384 KRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTY 443

Query: 448 KCII-GMCSRR 457
             +I G C  R
Sbjct: 444 STLIQGFCQSR 454



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 164/369 (44%), Gaps = 5/369 (1%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P L T N +++ +C   + SE    + R++   G + +   Y  ++    KSG   +  +
Sbjct: 193 PDLITLNTIVNGLCLKDRVSEAVDLIARMMAN-GCQPNQFTYGPILNRMCKSGNTASALD 251

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M +  I+P+V TY  +ID   K G++  A   +  M +K +K +   +N+LI +  
Sbjct: 252 LLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFC 311

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
             G  D    +L +M      + P+ +T  AL+ +    G++  A+++Y  +    I+  
Sbjct: 312 SFGRWDDGAQLLRDM--ITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPN 369

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   I         + A  + D M  KG  PD    + LI+    A +V+    + +
Sbjct: 370 TITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFR 429

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           +   +G+    ++YS+L+     ++    A ++++ M S  + P + T   L+  LCD  
Sbjct: 430 KMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNG 489

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           +L + + +L  M    +  +   Y+I++      + V+    L       GV  ++  + 
Sbjct: 490 ELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYN 549

Query: 449 CII-GMCSR 456
            ++ G+C R
Sbjct: 550 IMLSGLCKR 558



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 165/404 (40%), Gaps = 40/404 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           NR+ + G  +  +DLL  ME + +      Y     N+CK  + + +A  FF  +    +
Sbjct: 238 NRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGR-LDDALSFFSEMETKGI 296

Query: 93  S----TFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
                T+N L+ S C+  +  +GA Q+LR +    +  +   ++ LI +  K GK+    
Sbjct: 297 KANVFTYNSLIGSFCSFGRWDDGA-QLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAK 355

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
           ++++EM+  GIEPN  TY +LI G     ++ +A     +M SK   PD   +N LI   
Sbjct: 356 DLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGF 415

Query: 208 GQSGAVDRAFDVLAEMNAE---------------------------------VHPVDPDH 234
            ++  VD    +  +M+                                      V P  
Sbjct: 416 CKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGI 475

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T   L+    + G+++ A  +   +HK  ++    +Y I I+        + A S++  
Sbjct: 476 MTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCS 535

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           +  KGV  D    + ++        +  A  + ++ K  G      +Y++L+ A     +
Sbjct: 536 LPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYNTLIRAHLRGND 595

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
              +++L E MK        ST+  ++  L  G+     + +LS
Sbjct: 596 ITTSVQLIEEMKRCGFSSDASTVKIVMDMLSSGELDKSFLNMLS 639


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 167/358 (46%), Gaps = 11/358 (3%)

Query: 113 QVLRLVQE---AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169
           +VL+LV E    GLK D  +Y  +I    K+G+V    ++   M   G+ P+   Y  +I
Sbjct: 295 KVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVI 354

Query: 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
            G  K G V+ A   +  MR K + PD V + ++I    +SG +  A ++  EM   V  
Sbjct: 355 SGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEM--LVKG 412

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289
           ++PD +T  AL+     AG++  A  V+  + +  +      YT   +   + G+ + A 
Sbjct: 413 LEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVAN 472

Query: 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349
            +  +M++KG+ P+    + +++     G +E   ++++E    G     I+Y++LM A 
Sbjct: 473 ELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAY 532

Query: 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409
                  KA EL   M + +L+PT+ T N L+   C    L     ++  M   G+ PN 
Sbjct: 533 CKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNA 592

Query: 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNE 466
            T++ L+     K+++     +     + GV+P+   +  +I G C     KAR + E
Sbjct: 593 TTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHC-----KARNMKE 645



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 186/409 (45%), Gaps = 13/409 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-----IKEAFR 82
           YN +I    + G + E   LL  M + G+   + VY       CK         + +  R
Sbjct: 315 YNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMR 374

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             K+VP+    T +++  +C S K  E A ++   +   GL+ D   YT LI    K+G+
Sbjct: 375 RKKIVPDIVTYT-SVIHGICKSGKMVE-AREMFNEMLVKGLEPDEVTYTALIDGYCKAGE 432

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +   F V ++MV  G+ PNV TY AL DG  K G++  A      M  K ++P+   +N 
Sbjct: 433 MKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNT 492

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           ++    + G +++   ++ EM  ++    PD IT   LM A    G++ +A E+ +++  
Sbjct: 493 IVNGLCKIGNIEQTVKLMEEM--DLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLN 550

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             ++ T   + + +N    +G  E    + + M +KG++P+    ++L+        + A
Sbjct: 551 KRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRA 610

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
             EI +   ++G+     +Y+ L+     A+N ++A  L++ M       T +T +ALI 
Sbjct: 611 TTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIR 670

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
                 +  +  ++  +M+  GL      Y I +     + + E+ L L
Sbjct: 671 GFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEITLEL 719



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 204/441 (46%), Gaps = 15/441 (3%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLL---DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +  L+  G + E   L   + R G++   D   ++ +R    C  +  IK A + F+  P
Sbjct: 178 FQVLVENGFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRL--SCNFE-GIKIAVKVFEEFP 234

Query: 89  N-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                  T+S   +L  +C   K  E A  +L  + + G   D   Y  +++   + G++
Sbjct: 235 ELGVCWNTVSCNIVLHCLCQLGKVRE-AHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGEL 293

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D + ++  E+   G++P+ + Y  +I    K G+V +A      MR   V PD VV+  +
Sbjct: 294 DKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTV 353

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           I+   + G V  A  +  EM  +   + PD +T  +++     +G++  ARE++  +   
Sbjct: 354 ISGFCKLGNVSAACKLFDEMRRK--KIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVK 411

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
            ++     YT  I+   + G+ + A SV++ M +KG+ P+ V  +AL D     G+++ A
Sbjct: 412 GLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVA 471

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            E+L E   +G+   + +Y++++       N ++ ++L E M      P   T   L+ A
Sbjct: 472 NELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDA 531

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
            C   ++ K  E+L  M +  L P  +T+++L+        +E G  L+    E G++PN
Sbjct: 532 YCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPN 591

Query: 444 LVMFKCIIGM-CSRRYEKART 463
              F  ++   C +   +A T
Sbjct: 592 ATTFNSLMKQYCIKNNMRATT 612



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 190/413 (46%), Gaps = 15/413 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK-----EAFRFFKLVPNPT 91
           R G + + + L+++++ KGL   + +Y+     +CK+ + ++        R + + P+  
Sbjct: 289 RIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNV 348

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T  ++   C     S  A ++   ++   +  D   YT++I    KSGK+    E+F+
Sbjct: 349 VYT-TVISGFCKLGNVS-AACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFN 406

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           EM+  G+EP+  TY ALIDG  KAG++ +AF  +  M  K + P+ V + AL     ++G
Sbjct: 407 EMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNG 466

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE 270
            +D A ++L EM+ +   + P+  T   ++      G ++   +  K++ + ++ G  P+
Sbjct: 467 EIDVANELLHEMSRK--GLQPNVYTYNTIVNGLCKIGNIE---QTVKLMEEMDLAGFYPD 521

Query: 271 V--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              YT  ++   + G+   A  +   M  K + P  V  + L++    +G +E    +++
Sbjct: 522 TITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIE 581

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +GI     +++SLM       N +   E+Y+ M    + P  +T N LI   C   
Sbjct: 582 WMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKAR 641

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
            + +   +  +M   G      TY  L+    ++        L  + ++ G++
Sbjct: 642 NMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLV 694



 Score = 45.4 bits (106), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 56/138 (40%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P  +TFN LM       +     ++ + + + G+  D   Y  LI    K+  +   + +
Sbjct: 590 PNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFL 649

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EMV  G      TY ALI G  K  +  +A   +  MR   +  ++ +++  +    +
Sbjct: 650 HKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYE 709

Query: 210 SGAVDRAFDVLAEMNAEV 227
            G  +   ++  E   E+
Sbjct: 710 EGNWEITLELCDEFMTEL 727


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 200/461 (43%), Gaps = 16/461 (3%)

Query: 8   MLQFPYPNGKHANYAH--DVSEQLHSYNRLIRQ------GRISECIDLLEDMERKGLLDM 59
           ++++ Y +  H  Y    D+      Y   IR       GR +  + LL +M  +G  + 
Sbjct: 121 LVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGC-EF 179

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVL 115
           + V +    +    +    EA+  F  +      P + TFN L+ V     + + + ++ 
Sbjct: 180 NAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLF 239

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
             V + G+  +   +   I    + G +D    +   +V+ G+ P+V +Y  LI G  K 
Sbjct: 240 SKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKH 299

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            ++ +A      M +  V+P+   +N +I    ++G +  A  +L +  A      PD  
Sbjct: 300 SKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRD--AMFKGFIPDEF 357

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T  +L+    N G ++RA  V+    +   K +  +Y   +   S+ G    A  +  DM
Sbjct: 358 TYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDM 417

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            + G  PD    + +++     G +  A  IL +A  +G    I ++++L+      +N 
Sbjct: 418 MEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNM 477

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            KA+E+ + M S  + P V T N L+  LC   +L   ++    M   G  PN ITY+IL
Sbjct: 478 DKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNIL 537

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
           + +  +   V   + L  + K  G+ P++V    +I G+CS
Sbjct: 538 IESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCS 578



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 124/515 (24%), Positives = 205/515 (39%), Gaps = 76/515 (14%)

Query: 43  ECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           E   L ++M ++G+    L  +K+ H     +CK +  ++E+ + F  V      P L T
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHV----LCK-KGNVQESEKLFSKVMKRGVCPNLFT 253

Query: 95  FNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           FN+ +  +C      E A ++L  +   GL  D   Y TLI    K  K+       H+M
Sbjct: 254 FNIFIQGLCRKGAIDEAA-RLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           VN+G+EPN  TY  +I+G  KAG +  A         K   PD   +++LI      G +
Sbjct: 313 VNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDM 372

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           +RA  V  E  A         I    L+K  +  G V +A ++ K + ++        Y 
Sbjct: 373 NRAMAVFYE--AMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYN 430

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           + +N   + G    A  + +D   KG IPD    + LID       ++ A EIL    + 
Sbjct: 431 LVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH 490

Query: 334 GISVGIISYSSLMGACSNAKNW-----------------------------------QKA 358
           GI+  +I+Y++L+     A+                                      +A
Sbjct: 491 GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLV 417
           +EL++ MK+  L P + T+  LI  LC   +L K  E+   + K      +T  ++I++ 
Sbjct: 551 MELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMIN 610

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477
           A   K +V +   L  +       P+   ++ +I      Y K   ++            
Sbjct: 611 AFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMID----SYCKTGNID------------ 654

Query: 478 IENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
                  LA     E I  G +P+     KVL CL
Sbjct: 655 -------LAHTFLLENISKGLVPSFTTCGKVLNCL 682



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 147/336 (43%), Gaps = 16/336 (4%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  ++    + GKV     VF  M     EP+V +Y A+++   + G  ++A   Y  M
Sbjct: 78  VYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRM 137

Query: 189 RSKNVKPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           +   + PD       + +    G+  A  R  + +     E + V    +  G   + C 
Sbjct: 138 KDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENC- 196

Query: 246 NAGQVDRAREVYKMIHKYNIKGT-PEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIP 302
              Q+    E Y +  +   +G  P++ T    I+   + G+ + +  ++  + K+GV P
Sbjct: 197 ---QI----EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCP 249

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 361
           +    +  I      G ++ A  +L+   ++G++  +ISY++L+ G C ++K  +    L
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL 309

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           ++ + S  ++P   T N +I   C    +    ++L D    G  P+  TYS L+     
Sbjct: 310 HKMVNS-GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
             D+   + +  +A E G   +++++  ++   S++
Sbjct: 369 DGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQ 404



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/281 (21%), Positives = 123/281 (43%), Gaps = 14/281 (4%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAF 81
           YN L++    QG + + + L++DM   G       Y+     +CK      +   + +A 
Sbjct: 394 YNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAI 453

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
               +   P + TFN L+      ++ + A ++L  +   G+  D   Y TL+    K+ 
Sbjct: 454 AKGCI---PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKAR 510

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+D + + F  M+  G  PN+ TY  LI+   K  +V++A   +  M+++ + PD V   
Sbjct: 511 KLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLC 570

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
            LI     +G +D+A+++   +  E +           ++ A      V  A +++  + 
Sbjct: 571 TLICGLCSNGELDKAYELFVTIEKE-YKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMG 629

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
             +       Y + I+   +TG+ + A +   +   KG++P
Sbjct: 630 GSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVP 670



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 83/195 (42%), Gaps = 3/195 (1%)

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEA 322
            K T E Y   I      G +E    V  +M K     + + V++  + D+ G  GKV+ 
Sbjct: 36  FKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDY-GRKGKVQE 94

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  + +          + SY+++M        + +A ++Y  MK I + P V T    + 
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMK 154

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           + C   +    + +L++M   G   N ++Y  ++    +++       L  +  + G+ P
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICP 214

Query: 443 NLVMFKCIIGMCSRR 457
           +++ F  +I +  ++
Sbjct: 215 DILTFNKLIHVLCKK 229


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 119/493 (24%), Positives = 202/493 (40%), Gaps = 61/493 (12%)

Query: 21  YAHDVSEQLHSYNRLI------RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           + HD      SYNR++      R G  SE + L+ DMER G+       +     +    
Sbjct: 114 FRHDA----FSYNRILALLFRTRAGP-SEALRLVADMERDGVAGNISTINL----LVGMG 164

Query: 75  KAIKEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
               E  R  +L     L     T+  ++     S++    FQV   ++  G K D   Y
Sbjct: 165 GGGVEMERCLELASKWGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAY 224

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
             L+   AK+G VD  F+VF +M      P+ +TY  LI    KAG+ +K    +  M S
Sbjct: 225 NMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMSGKAGRTSKFLSFFDEMVS 284

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
           K    + + FN +I A G++  VD+   VL++M    +   P+  T    +   A  GQ+
Sbjct: 285 KGCVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVE--NDCQPNQFTYSITLDILATEGQL 342

Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA----CSVYDD------------ 294
            R  EV  +  ++  +    +Y+  +    ++G    A    C +++             
Sbjct: 343 HRLNEVLDICSRFMNRS---IYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSM 399

Query: 295 -------------------MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
                              M +KG++ D    + +    G   +V     +  + K  GI
Sbjct: 400 LEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGI 459

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              + +Y+ ++ +        KA EL+E M++   KP V T N+LI  L     L +   
Sbjct: 460 IPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHM 519

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           +  +M+  G  P+  TYSIL+    + + VE+   L  +   +G  PN+V +  ++    
Sbjct: 520 LFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLE 579

Query: 456 RR--YEKARTLNE 466
           RR   E+A  L E
Sbjct: 580 RRGKTEEAHKLYE 592



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 180/432 (41%), Gaps = 12/432 (2%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           +R   +S+   + E+M RKG   +D   +    +       + +AF+ F+ +      P 
Sbjct: 197 LRSREVSKGFQVYEEMRRKGY-KLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPD 255

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+ +L+ +   +  +         +   G   +   + T+I    K+  VD +  V  
Sbjct: 256 AYTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKVIFVLS 315

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI-MRSKNVKPDRVVFNALITACGQS 210
           +MV    +PN  TY   +D  A  GQ+ +      I  R  N    R +++ L+ +  +S
Sbjct: 316 KMVENDCQPNQFTYSITLDILATEGQLHRLNEVLDICSRFMN----RSIYSYLVKSLCKS 371

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G    A +V   M       D D     ++++   NA +   A ++  M+ +  I     
Sbjct: 372 GHASEAHNVFCRMWNSHEKGDRDAFV--SMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVG 429

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
           +Y +  +   +     F  +++D M   G+IPD    + +I   G  G V+ A E+ +  
Sbjct: 430 MYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVM 489

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           +       +++Y+SL+       +  +A  L++ M+     P V T + LI      +++
Sbjct: 490 EASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKV 549

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
                +  +M S G  PN +TY+ILL   ER+   E    L    K+ G+IP+ + +  +
Sbjct: 550 EMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSITYSIL 609

Query: 451 IGMCSRRYEKAR 462
             + SR     R
Sbjct: 610 ERLESRSQRTVR 621


>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 175/382 (45%), Gaps = 19/382 (4%)

Query: 31  SYNRLIRQGRISECIDLLE----DMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRF 83
           +Y  LI+   IS  ++  E    +M   GL     VY+A    + K   S KA +   R 
Sbjct: 192 TYALLIKAYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRM 251

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAK 139
            K    PT  T+ ML+++   +  S   F  L+L  E  +  DCK     YT L+   A+
Sbjct: 252 KKDACKPTTETYTMLINLYGKAGKS---FMALKLFHEM-MSHDCKPNICTYTALVNAFAR 307

Query: 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199
            G  +   EVF +M  AG+EP+V+ Y AL++  ++AG    A   + +M+    +PDR  
Sbjct: 308 EGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRAS 367

Query: 200 FNALITACGQSGAVDRAFDVLAEMN-AEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
           +N L+ A G++G  D A  V  +M    + P    H+    L+ A +  G V++  E+  
Sbjct: 368 YNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMV---LLSAYSKMGSVNKCEEILN 424

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + K  +K    V    +N   + G +     V   M K   + D    + LI+  G AG
Sbjct: 425 QMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAG 484

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
            +E   ++ Q   ++G+   +++++S +GA S  K + K LE++E M      P   T  
Sbjct: 485 FIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAK 544

Query: 379 ALITALCDGDQLPKTMEVLSDM 400
            L+ A  + DQ  +   V+  M
Sbjct: 545 VLLAACSNEDQTEQVTTVIRTM 566



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 155/335 (46%), Gaps = 8/335 (2%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +N  ++      +S+ A ++ + +++   K   + YT LI    K+GK     ++FHEM+
Sbjct: 228 YNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMM 287

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG--- 211
           +   +PN+ TY AL++  A+ G   KA   +  M+   ++PD   +NAL+ A  ++G   
Sbjct: 288 SHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPY 347

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
                F ++  M  E     PD  +   L+ A   AG  D A  V+K + +  I  T + 
Sbjct: 348 GAAEIFSLMQHMGCE-----PDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKS 402

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           + + ++  S+ G       + + M K G+  D   L+++++  G  G+     E+L+  +
Sbjct: 403 HMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVME 462

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
                  I +Y+ L+     A   ++  +L++ + S  LKP V T  + I A        
Sbjct: 463 KGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYL 522

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
           K +E+  +M   G  P+  T  +LL AC  +D  E
Sbjct: 523 KCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTE 557



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 154/366 (42%), Gaps = 2/366 (0%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT  T+ +L+     S   E A  V   ++  GL +   +Y   I    K G  D   E+
Sbjct: 188 PTEDTYALLIKAYCISGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEI 247

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F  M     +P   TY  LI+   KAG+   A   +  M S + KP+   + AL+ A  +
Sbjct: 248 FKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAR 307

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G  ++A +V  +M  +   ++PD     ALM+A + AG    A E++ ++     +   
Sbjct: 308 EGLCEKAEEVFEQM--QEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDR 365

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y I ++   + G  + A +V+ DM + G+ P       L+      G V    EIL +
Sbjct: 366 ASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQ 425

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               G+ +     +S++        + K  E+   M+       +ST N LI        
Sbjct: 426 MCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGF 485

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++   + S GL P+ +T++  + A  +K      L +  +  +DG  P+    K 
Sbjct: 486 IERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLKCLEIFEEMIDDGCYPDGGTAKV 545

Query: 450 IIGMCS 455
           ++  CS
Sbjct: 546 LLAACS 551



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 131/304 (43%), Gaps = 2/304 (0%)

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           ++ +  +P+V  Y  LI+   +     +A   Y  +      P    +  LI A   SG 
Sbjct: 146 LLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGL 205

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           +++A  V AEM     P     +   A +      G  D+A E++K + K   K T E Y
Sbjct: 206 LEKAEAVFAEMRNYGLP--SSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETY 263

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
           T+ IN   + G    A  ++ +M      P+    +AL++     G  E A E+ ++ + 
Sbjct: 264 TMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQE 323

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
            G+   + +Y++LM A S A     A E++  M+ +  +P  ++ N L+ A         
Sbjct: 324 AGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDD 383

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
              V  DMK +G+ P   ++ +LL A  +   V     +L+Q  + G+  +  +   ++ 
Sbjct: 384 AEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLN 443

Query: 453 MCSR 456
           +  R
Sbjct: 444 LYGR 447



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 8/261 (3%)

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
           I+   + KPD + +N LI A GQ      A     ++  E   + P   T   L+KA   
Sbjct: 145 ILLRSSFKPDVICYNLLIEAFGQKLLYKEAESTYLQL-LEARCI-PTEDTYALLIKAYCI 202

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           +G +++A  V+  +  Y +  +  VY   IN   + G+ + A  ++  M K    P    
Sbjct: 203 SGLLEKAEAVFAEMRNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTET 262

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            + LI+  G AGK   A ++  E  +      I +Y++L+ A +     +KA E++E M+
Sbjct: 263 YTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQ 322

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KD 423
              L+P V   NAL+ A           E+ S M+ +G  P+  +Y+IL+ A  +   +D
Sbjct: 323 EAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQD 382

Query: 424 DVEVGLMLLSQAKEDGVIPNL 444
           D E    +    K  G+ P +
Sbjct: 383 DAEA---VFKDMKRVGITPTM 400



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 10/178 (5%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PT+ +  +L+S  +         ++L  + ++GLK D  +  +++    + G+   M E
Sbjct: 397 TPTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEE 456

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V   M       ++ TY  LI+   +AG + +    + ++ SK +KPD V + + I A  
Sbjct: 457 VLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYS 516

Query: 209 QSGAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +     +  ++  EM      +D    PD  T   L+ AC+N  Q ++   V + +HK
Sbjct: 517 KKKLYLKCLEIFEEM------IDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTMHK 568



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 55/120 (45%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           +VLR++++    AD   Y  LI    ++G ++ M ++F  + + G++P+V T+ + I   
Sbjct: 456 EVLRVMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAY 515

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
           +K     K    +  M      PD      L+ AC      ++   V+  M+ ++  V P
Sbjct: 516 SKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTMHKDMKTVLP 575


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 166/377 (44%), Gaps = 12/377 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + M++ + A     + A  +   +QE   K D  +Y +LI   +++G+      +  +M+
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            A I P   TY  +I+ C  AG   KA      M    V PD V  N +++A        
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYS 133

Query: 215 RA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           +A   F+++   N     V  D  T+  ++      GQ   A E++  + +   K  P+V
Sbjct: 134 KAISYFEIMKGAN-----VTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDV 188

Query: 272 --YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  ++     G  E   +++D M  +GV P+ V  ++L+      G    A  I   
Sbjct: 189 VTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNL 248

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G+   I+SY+SL+ A   +   +KA E++  MK    KP   + NALI A      
Sbjct: 249 IKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGM 308

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L + + +L +M+  G+ P+ ++ S LL AC R   +     +L  A+  G+  N V +  
Sbjct: 309 LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNS 368

Query: 450 IIG--MCSRRYEKARTL 464
            I   +    YEKA  L
Sbjct: 369 GIKSYLSFGDYEKALEL 385



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/504 (21%), Positives = 205/504 (40%), Gaps = 71/504 (14%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----N 89
           L++ G+  E I+L   M ER+     D V +    +       ++     F L+      
Sbjct: 161 LVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVK 220

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P +  +N L+   AS      A  +  L+++ GL+ D   YT+L+    +S + +   EV
Sbjct: 221 PNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREV 280

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F++M     +PN  +Y ALID    AG + +A G    M    ++PD V  + L+ ACG+
Sbjct: 281 FNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGR 340

Query: 210 SGAVDRAFDVLA---------------------------EMNAEVHP------VDPDHIT 236
              + R   +L                            E   E++       V PD +T
Sbjct: 341 CRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVT 400

Query: 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPE-----------------------VYT 273
              L+   +  G+   +   ++ +    +  T E                        YT
Sbjct: 401 YNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYT 460

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
             I   +  G W+ A  ++ +M   G+ PD +  S+L++     G+ E   ++++  K +
Sbjct: 461 TLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKK 520

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
            I +   SY  ++ +C+  ++W+ A E+ E++ S     +V T+N ++  L    +    
Sbjct: 521 SIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENM 580

Query: 394 MEVLSDM----KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           M++   M     ++GL    +    LLV  + +  +EV    L   ++ GV P L MF+ 
Sbjct: 581 MKLFYKMVTSCSTVGLSTYAVVLRNLLVVGKWRKYIEV----LQWMEDSGVHPTLYMFQN 636

Query: 450 IIGMCSRR--YEKARTLNEHVLSF 471
           ++    R    + A T+ E + S 
Sbjct: 637 VLPYIWRENGMDFAATMQEKISSL 660



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 170/359 (47%), Gaps = 15/359 (4%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  +I   A+  +VD    +F EM     +P+   Y +LI   ++AGQ   A      M
Sbjct: 13  IYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDM 72

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               + P R  +N +I ACG +G   +A ++  +M    + V PD +T   ++ A  N  
Sbjct: 73  LRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTE--NGVGPDLVTHNIVLSALKNGA 130

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVF 306
           Q  +A   ++++   N+        I I+C  + G    A  +++ M ++     PD V 
Sbjct: 131 QYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVT 190

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            ++++      G+VE    I      +G+   I++Y+SL+GA ++    ++AL ++  +K
Sbjct: 191 YTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIK 250

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              L+P + +  +L+ A     Q  K  EV + MK     PN ++Y+ L+ A      ++
Sbjct: 251 KNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLK 310

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----RYE------KARTLNEHVLSFNSG 474
             + LL + ++DG+ P++V    ++  C R     R E      ++R ++ + +++NSG
Sbjct: 311 EAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSG 369



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 160/367 (43%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+   + +     A  ++  +  A +      Y  +I  C  +G      E+
Sbjct: 44  PDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALEL 103

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M   G+ P++ T+  ++       Q +KA   + IM+  NV  D    N +I    +
Sbjct: 104 CKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVK 163

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G    A ++   M        PD +T  ++M +    GQV+  + ++ ++    +K   
Sbjct: 164 IGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNI 223

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +   +  G    A ++++ + K G+ PD V  ++L++  G + + E A E+  +
Sbjct: 224 VAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNK 283

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K        +SY++L+ A  +A   ++A+ L   M+   ++P V +++ L+ A     Q
Sbjct: 284 MKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQ 343

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +   +L   +S G+  NT+ Y+  + +     D E  L L +  +E  V P+ V +  
Sbjct: 344 ITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNI 403

Query: 450 IIGMCSR 456
           +I   S+
Sbjct: 404 LISGSSK 410



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           ++Y + I   ++    + A  ++ +M +    PD    ++LI     AG+   A  I+++
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                I     +Y++++ AC  A NW+KALEL + M    + P + T N +++AL +G Q
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
             K +     MK   +  +T T +I++
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIII 158


>gi|440804148|gb|ELR25026.1| PPR repeat-containing protein [Acanthamoeba castellanii str. Neff]
          Length = 715

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 156/337 (46%), Gaps = 25/337 (7%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           +  L+ +C +S D + A  +  L+++  ++ D  ++ +L+  CA    V+   E+  EM 
Sbjct: 151 YTSLIKICTTSSDLDSALAMWELMKQRQVRPDAHVFASLLAACASQCNVEKAEELLKEME 210

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
              +EPNV+ Y ALID  AK   +++AF     M  K+V+P+   F+ LI AC +   + 
Sbjct: 211 QFEVEPNVYVYSALIDVYAKTTNISRAFATLDAMMQKDVRPNVWTFSTLINACARVQDLP 270

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD-RAREVYKMIHKYNIK--GTPEV 271
             F ++  M  E   V P+  T   ++ AC +  Q   R R +       +++     EV
Sbjct: 271 SVFAIMRIM--EQCEVRPNAHTYTTILDACLDQPQFYIRHRMISSSSSSSSVREGEAGEV 328

Query: 272 YTIA-----INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           + +A     +   +   D + A SV   M + G  P+E   ++L+     AGKV+ A+E 
Sbjct: 329 HNLALLTAVLGLAATQADLDVATSVMAIMKQNGWEPNERTYTSLLRVYSQAGKVDLAYET 388

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---------------LK 371
           L     +G++  +I  + ++GAC   ++ QK + L E +  +                 +
Sbjct: 389 LLAMPKRGVTPNVIHLNVVLGACVKTRDQQKIIALAELIGRLDSPDLATYTSFIIDNGFQ 448

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408
           P +    AL+      D   + +E+  DMK+ G+ P+
Sbjct: 449 PDMLVYQALLAVSWSKDDPGEMVEIFEDMKARGIEPD 485



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 130/298 (43%), Gaps = 12/298 (4%)

Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
             M  + V+ + + + +LI  C  S  +D A  +   M      V PD     +L+ ACA
Sbjct: 137 NFMTDRGVRANAMCYTSLIKICTTSSDLDSALAMWELMKQR--QVRPDAHVFASLLAACA 194

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
           +   V++A E+ K + ++ ++    VY+  I+  ++T +   A +  D M +K V P+  
Sbjct: 195 SQCNVEKAEELLKEMEQFEVEPNVYVYSALIDVYAKTTNISRAFATLDAMMQKDVRPNVW 254

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW---QKALELY 362
             S LI+       + + F I++  +   +     +Y++++ AC +   +    + +   
Sbjct: 255 TFSTLINACARVQDLPSVFAIMRIMEQCEVRPNAHTYTTILDACLDQPQFYIRHRMISSS 314

Query: 363 EHMKSIKLKPTVSTMN-ALITAL----CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
               S++        N AL+TA+         L     V++ MK  G  PN  TY+ LL 
Sbjct: 315 SSSSSVREGEAGEVHNLALLTAVLGLAATQADLDVATSVMAIMKQNGWEPNERTYTSLLR 374

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSFNS 473
              +   V++    L    + GV PN++    ++G C  +R  +K   L E +   +S
Sbjct: 375 VYSQAGKVDLAYETLLAMPKRGVTPNVIHLNVVLGACVKTRDQQKIIALAELIGRLDS 432



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 110/252 (43%), Gaps = 9/252 (3%)

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
            D  +++   +    ++     YT  I  C+ + D + A ++++ M ++ V PD    ++
Sbjct: 129 TDLGKQLLNFMTDRGVRANAMCYTSLIKICTTSSDLDSALAMWELMKQRQVRPDAHVFAS 188

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           L+        VE A E+L+E +   +   +  YS+L+   +   N  +A    + M    
Sbjct: 189 LLAACASQCNVEKAEELLKEMEQFEVEPNVYVYSALIDVYAKTTNISRAFATLDAMMQKD 248

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           ++P V T + LI A      LP    ++  M+   + PN  TY+ +L AC  +    +  
Sbjct: 249 VRPNVWTFSTLINACARVQDLPSVFAIMRIMEQCEVRPNAHTYTTILDACLDQPQFYIRH 308

Query: 430 MLLS--------QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENK 481
            ++S        +  E G + NL +   ++G+ + + +     +   +   +G    E  
Sbjct: 309 RMISSSSSSSSVREGEAGEVHNLALLTAVLGLAATQADLDVATSVMAIMKQNGWEPNERT 368

Query: 482 WTSLALMVYREA 493
           +TSL L VY +A
Sbjct: 369 YTSL-LRVYSQA 379



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 145/391 (37%), Gaps = 90/391 (23%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECID----LLEDMERKGLLD 58
           D GK +L F    G  AN           Y  LI+    S  +D    + E M+++ +  
Sbjct: 130 DLGKQLLNFMTDRGVRANAM--------CYTSLIKICTTSSDLDSALAMWELMKQRQVRP 181

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQV 114
              V+ A     C SQ  +++A    K +      P +  ++ L+ V A + +   AF  
Sbjct: 182 DAHVF-ASLLAACASQCNVEKAEELLKEMEQFEVEPNVYVYSALIDVYAKTTNISRAFAT 240

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC-- 172
           L  + +  ++ +   ++TLI  CA+   + ++F +   M    + PN HTY  ++D C  
Sbjct: 241 LDAMMQKDVRPNVWTFSTLINACARVQDLPSVFAIMRIMEQCEVRPNAHTYTTILDACLD 300

Query: 173 ----------------------AKAGQVAK-------------------AFGAYGIMRSK 191
                                  +AG+V                     A     IM+  
Sbjct: 301 QPQFYIRHRMISSSSSSSSVREGEAGEVHNLALLTAVLGLAATQADLDVATSVMAIMKQN 360

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
             +P+   + +L+    Q+G VD A++ L  M      V P+ I +  ++ AC       
Sbjct: 361 GWEPNERTYTSLLRVYSQAGKVDLAYETLLAMPKR--GVTPNVIHLNVVLGACV------ 412

Query: 252 RAREVYKMIHKYNIKG---TPE------------------VYTIAINCCSQTGDWEFACS 290
           + R+  K+I    + G   +P+                  VY   +       D      
Sbjct: 413 KTRDQQKIIALAELIGRLDSPDLATYTSFIIDNGFQPDMLVYQALLAVSWSKDDPGEMVE 472

Query: 291 VYDDMTKKGVIPDEVFL-SALIDFAGHAGKV 320
           +++DM  +G+ PDE    +AL + A H   +
Sbjct: 473 IFEDMKARGIEPDESICDTALAEVAQHVSSL 503



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 67/151 (44%)

Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
           FL      + +    +   ++L    ++G+    + Y+SL+  C+ + +   AL ++E M
Sbjct: 115 FLQVFRKMSDYPSFTDLGKQLLNFMTDRGVRANAMCYTSLIKICTTSSDLDSALAMWELM 174

Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
           K  +++P      +L+ A      + K  E+L +M+   + PN   YS L+    +  ++
Sbjct: 175 KQRQVRPDAHVFASLLAACASQCNVEKAEELLKEMEQFEVEPNVYVYSALIDVYAKTTNI 234

Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
                 L    +  V PN+  F  +I  C+R
Sbjct: 235 SRAFATLDAMMQKDVRPNVWTFSTLINACAR 265


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 165/363 (45%), Gaps = 3/363 (0%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F++LM+    S     A Q  RLV++  L+        L     K       +  + E++
Sbjct: 158 FSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEEIL 217

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           + G  P+V  +  L+    K  ++ +A   +G +  + ++P  V FN LI    +SG +D
Sbjct: 218 DCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLD 277

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
           + F +   M    + V PD  T   L+      GQ+D A +++  +    +      +T 
Sbjct: 278 QGFRLKRFMME--NRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTT 335

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            IN    TG  +    +Y  M +KGV PD +  + LI+     G +  A +++ E   +G
Sbjct: 336 LINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG 395

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +     +Y+ L+  C    + + ALE+ + M    ++       ALI+  C   Q+ +  
Sbjct: 396 LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAE 455

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
             L +M   G+ P+  TY++++    +K DV+ G  LL + + DG +P +V +  ++ G+
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGL 515

Query: 454 CSR 456
           C +
Sbjct: 516 CKQ 518



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 186/424 (43%), Gaps = 17/424 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-- 94
           R+G+ S        +E +G    + V+     N         +A + F+LV    L    
Sbjct: 132 RKGKNSASSVFTSVLEARGTHQSNLVFSV-LMNAYTDSGYFSDAIQCFRLVRKHNLQIPF 190

Query: 95  ------FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
                 F+ LM +  +S     A+     + + G   D   +  L+    K  K++    
Sbjct: 191 HSCGYLFDRLMKLNLTSP----AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQL 246

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F E+   G+ P V ++  LI+G  K+G + + F     M    V PD   ++ LI    
Sbjct: 247 LFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLC 306

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           + G +D A  +  EM      + P+ +T   L+      G+ D   E+Y+ + +  +K  
Sbjct: 307 KEGQLDDANKLFLEMCDR--GLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPD 364

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y   IN   + GD   A  +  +MT++G+ PD+   + LID     G +E+A EI +
Sbjct: 365 VITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRK 424

Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           E   +GI +  +++++L+ G C   +  +    L E +++  +KP  +T   +I   C  
Sbjct: 425 EMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEA-GIKPDDATYTMVIHGFCKK 483

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             +    ++L +M+  G  P  +TY++LL    ++  ++   MLL      GV+P+ + +
Sbjct: 484 GDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITY 543

Query: 448 KCII 451
             ++
Sbjct: 544 NILL 547



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 42/338 (12%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           Y  DV +     +RL ++ +I+E   L  ++ ++GL      ++      CKS   + + 
Sbjct: 221 YPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGN-LDQG 279

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           FR  + +      P + T+++L++        + A ++   + + GL  +   +TTLI  
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLING 339

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
              +G+ D   E++ +M+  G++P+V TY  LI+G  K G + +A      M  + +KPD
Sbjct: 340 HCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPD 399

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA--- 253
           +  +  LI  C + G ++ A ++  EM  E   ++ D++   AL+      GQV  A   
Sbjct: 400 KFTYTMLIDGCCKEGDLESALEIRKEMVKE--GIELDNVAFTALISGFCREGQVIEAERT 457

Query: 254 -REV-----------YKM-IHKYNIKG-----------------TPEV--YTIAINCCSQ 281
            RE+           Y M IH +  KG                  P V  Y + +N   +
Sbjct: 458 LREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCK 517

Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
            G  + A  + D M   GV+PD++  + L++    A K
Sbjct: 518 QGQMKNANMLLDAMLNLGVVPDDITYNILLERTLQAWK 555


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 172/376 (45%), Gaps = 9/376 (2%)

Query: 80  AFRFFKLV-PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +FR   L  P P +  F+ L S        E    + + ++  G++ D    + LI    
Sbjct: 49  SFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFC 108

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
              +VD    V  +++  G+EP++ T+  L++G    G++ +    Y  M  + ++P+  
Sbjct: 109 HLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVY 168

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            +N +I +  +SG  + A   L +M  E     P+ +    L+      GQ+D AR V+ 
Sbjct: 169 TYNVIINSLSKSGKANEALGFLKQM--EKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFD 226

Query: 259 MIHKYNIKG-TPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           ++     KG TP VYT    +N   +    E A  + D+  +KG++PD V  + +I    
Sbjct: 227 LMVS---KGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLC 283

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            AG+  AA ++ +     G +  I++Y  L+       N ++A  L++ M+   +KP + 
Sbjct: 284 RAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLV 343

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
               LI +LC   ++    E+ S +   GL PN  TY+ L+ A  ++  +     L  + 
Sbjct: 344 IYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKM 403

Query: 436 KEDGVIPNLVMFKCII 451
           +EDG  P+   +  II
Sbjct: 404 EEDGCTPDKCAYNVII 419



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 151/338 (44%), Gaps = 10/338 (2%)

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTC 137
           +  KL   P++ TF  L++ +C   K      QV+ L  +    GL+ +   Y  +I + 
Sbjct: 122 KILKLGLEPSIVTFTTLLNGLCMEGKMD----QVMMLYDDMLVRGLQPNVYTYNVIINSL 177

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
           +KSGK +       +M   G  PNV  Y  LIDG    GQ+ +A   + +M SK   P+ 
Sbjct: 178 SKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNV 237

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             + +L+    +   ++ A  +L E   +   + PD +T   ++     AG+   A++++
Sbjct: 238 YTYTSLMNGYCKIERIEEAVQLLDETLRK--GLVPDIVTFTTIISGLCRAGRPLAAQQLF 295

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
           + I  +        Y + ++   + G+ E A +++ +M +  V P+ V  + LID     
Sbjct: 296 RYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKC 355

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           GK++   E+     ++G+   + +Y++L+GA        +A +L+  M+     P     
Sbjct: 356 GKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAY 415

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
           N +I             +++ +M + G   +  T ++L
Sbjct: 416 NVIIQGFLQHKDPSMARQLVEEMVNRGFSADAATRALL 453



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 3/187 (1%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFF-KLVPNPTLSTFN 96
           RI E + LL++  RKGL+     +      +C++ +  A ++ FR+       P + T+ 
Sbjct: 252 RIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYG 311

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           +L+       + E AF + + +Q + +K +  +YT LI +  K GK+    E+F  +++ 
Sbjct: 312 VLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDE 371

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           G++PNV+TY AL+    K G + +A   +  M      PD+  +N +I    Q      A
Sbjct: 372 GLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMA 431

Query: 217 FDVLAEM 223
             ++ EM
Sbjct: 432 RQLVEEM 438



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 106/243 (43%), Gaps = 16/243 (6%)

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           D + A + +  M  +  +P  V  S L       G  E    + +E +  GI   I S S
Sbjct: 42  DKDDALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLS 101

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
            L+    +       L +   +  + L+P++ T   L+  LC   ++ + M +  DM   
Sbjct: 102 ILINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVR 161

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 461
           GL PN  TY++++ +  +       L  L Q ++ G +PN+V +  +I G C R + ++A
Sbjct: 162 GLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEA 221

Query: 462 RTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVL 509
           R++ + ++S     P +   +TSL            A+ +  E +  G +P +   + ++
Sbjct: 222 RSVFDLMVS-KGCTPNVYT-YTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTII 279

Query: 510 GCL 512
             L
Sbjct: 280 SGL 282


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 113/515 (21%), Positives = 206/515 (40%), Gaps = 80/515 (15%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK------------DSEG 110
           +H++  +      AI    R  ++ P P+   FN L++  A  K            DS G
Sbjct: 32  FHSKSLHFNTIDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFG 91

Query: 111 -----------------------AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
                                  AF VL  + + G + D   +TTLI      GK+    
Sbjct: 92  IPPNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEAL 151

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F +M+  G  P+V TYG LI+G  K G  + A    G M  KN +P+   +N +I + 
Sbjct: 152 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211

Query: 208 GQSGAVDRAFDVLAEM------------NAEVHP---------------------VDPDH 234
            +   V  AF++ +EM            N+ +H                      + PD 
Sbjct: 212 CKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDV 271

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           ++   ++ A    G+V  A +V   + +  ++     YT  ++      + + A  V+D 
Sbjct: 272 VSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDT 331

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M  KG +P+ +  + LI+      +++ A  +  E   Q +    ++YS+L+    + + 
Sbjct: 332 MVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVER 391

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            Q A+ L+  M +    P + T   L+  LC    L + M +L  ++   L P+    +I
Sbjct: 392 LQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNI 451

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-----EKARTLNEHV 468
            +    R  ++E    L S     G+ P++  +  +I G+C R       +  R ++E+ 
Sbjct: 452 AIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENG 511

Query: 469 LSFNS------GRPQIENKWTSLALMVYREAIVAG 497
            + N        R  + N  TS A+ + +E +  G
Sbjct: 512 CTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARG 546



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 171/402 (42%), Gaps = 43/402 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N L + G  S  I LL  M +K        Y+    ++CK ++ + EAF  F ++V    
Sbjct: 174 NGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQ-VTEAFNLFSEMVTKGI 232

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+N L+    +  + +    +L  + ++ +  D   + T++    K GKV    +
Sbjct: 233 SPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHD 292

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V  +M+  G+EPNV TY AL+DG     ++ +A   +  M  K   P+ + +N LI    
Sbjct: 293 VVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYC 352

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-------------------MKACANAGQ 249
           +   +D+A  +  EM  +   + PD +T   L                   M AC+    
Sbjct: 353 KIQRIDKAMYLFGEMCRQ--ELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPN 410

Query: 250 V----------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
           +                  A  + K I   N+    +V  IAI+   + G+ E A  ++ 
Sbjct: 411 LVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFS 470

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +++ KG+ PD    S +I+     G ++ A ++ +E    G ++    Y+++        
Sbjct: 471 NLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNN 530

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
              +A++L + M +       STM   +  L D D L ++++
Sbjct: 531 ETSRAIQLLQEMVARGFSADASTMTLFVKMLSD-DGLDQSLK 571



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 96/214 (44%), Gaps = 7/214 (3%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN LI    +  RI + + L  +M R+ L+     Y      +C  ++       F ++
Sbjct: 343 SYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEM 402

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V     P L T+ +L+     ++    A  +L+ ++ + L  D ++    I    ++G++
Sbjct: 403 VACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGEL 462

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           +A  ++F  + + G++P+V TY  +I+G  + G + +A   +  M       +  ++N +
Sbjct: 463 EAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTI 522

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
                ++    RA  +L EM A     D   +T+
Sbjct: 523 TRGFLRNNETSRAIQLLQEMVARGFSADASTMTL 556


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 170/379 (44%), Gaps = 43/379 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T N+L++     +    AF VL  + + G + +   + TLI      GK+  +  +
Sbjct: 101 PNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHL 160

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M+  G +PNV TYG LI+G  K G  + A      M   N +PD VV+ ++I +  +
Sbjct: 161 FDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 220

Query: 210 SGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
              V +AF++ +EM   +H  + P   T  +L+ A  N                      
Sbjct: 221 DRQVTQAFNLFSEM---IHQGISPSIFTYNSLIHALCNL--------------------- 256

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
                     C    +W+   ++ ++M    ++P+ V  S ++D     GKV  A +++ 
Sbjct: 257 ----------C----EWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVD 302

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G+   +++Y++LM          +A+++++ M      P V + + LI   C   
Sbjct: 303 MMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQ 362

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ K M +  +M    L PNT+TYS L+        ++  + L  +    G IP+ V + 
Sbjct: 363 RIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY- 421

Query: 449 CII--GMC-SRRYEKARTL 464
           CI+   +C +RR ++A  L
Sbjct: 422 CILLDYLCKNRRLDEAIAL 440



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 173/403 (42%), Gaps = 50/403 (12%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K I E F+       P + T+  L++       +  A ++LR +++   + D  +YT++I
Sbjct: 163 KMIGEGFQ-------PNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSII 215

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +  K  +V   F +F EM++ GI P++ TY +LI       +          M +  + 
Sbjct: 216 DSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIM 275

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ V+F+ ++ A  + G V  A DV+  M      V+P+ +T  ALM       ++D A 
Sbjct: 276 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKR--GVEPNVVTYNALMDGHCLRSEMDEAV 333

Query: 255 EVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +V+  +     KG  P+V  Y+  IN   +    E A  ++++M +K +IP+ V  S L+
Sbjct: 334 KVFDTM---VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLM 390

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG-ACSN------------------- 351
               H G+++ A  +  E   +G     +SY  L+   C N                   
Sbjct: 391 HGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMD 450

Query: 352 ---------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
                          A   + A +L+ ++ S  L P V T   +I  LC    L +  ++
Sbjct: 451 PDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKL 510

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
             +MK  G  PN  TY+++     R ++   G+ LL +    G
Sbjct: 511 FGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARG 553



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 171/406 (42%), Gaps = 42/406 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G  S  I LL  ME+        VY +   ++CK ++ + +AF  F  + +   
Sbjct: 181 NGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ-VTQAFNLFSEMIHQGI 239

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P++ T+N L+    +  + +    +L  +  + +  +  +++T++    K GKV    +
Sbjct: 240 SPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHD 299

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V   M+  G+EPNV TY AL+DG     ++ +A   +  M  K   PD V ++ LI    
Sbjct: 300 VVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYC 359

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV------------------ 250
           +   +++A  +  EM  +   + P+ +T   LM    + G++                  
Sbjct: 360 KIQRIEKAMYLFEEMCRK--ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPD 417

Query: 251 -----------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
                            D A  + K I   N+    ++YTI I+   + G+ E A  ++ 
Sbjct: 418 FVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFS 477

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +++ KG+ P+    + +I+     G +  A ++  E K +G S    +Y+ +        
Sbjct: 478 NLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNN 537

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
              + ++L + M +      VST   L+  L D        ++LS+
Sbjct: 538 ETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQILSE 583



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 57/387 (14%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +T L+ +  K      +  + H+M + GI PN++T   LI+      ++  AF     + 
Sbjct: 71  FTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKIL 130

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               +P+   FN LI      G +     +  +M  E     P+ +T G L+      G 
Sbjct: 131 KLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGE--GFQPNVVTYGTLINGLCKVGS 188

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
              A  + + + + N +                                   PD V  ++
Sbjct: 189 TSAAIRLLRSMEQGNCQ-----------------------------------PDVVVYTS 213

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           +ID      +V  AF +  E  +QGIS  I +Y+SL+ A  N   W+    L   M + K
Sbjct: 214 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 273

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           + P V   + ++ ALC   ++ +  +V+  M   G+ PN +TY+ L+     + +++  +
Sbjct: 274 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 333

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 487
            +       G  P++V +  +I G C  +R EKA  L E +      +  I N  T   L
Sbjct: 334 KVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR----KELIPNTVTYSTL 389

Query: 488 M--------------VYREAIVAGTIP 500
           M              ++ E +  G IP
Sbjct: 390 MHGLCHVGRLQDAIALFHEMVTRGQIP 416


>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g19290-like [Cucumis
           sativus]
          Length = 885

 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 118/514 (22%), Positives = 208/514 (40%), Gaps = 77/514 (14%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKAIKEAFRFF--KLVP 88
           +  LIR G       L  D+ RKG    +  ++      C K    I EA      K   
Sbjct: 229 FRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRC 288

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + ++N++++       S  A  +L L+ E G K     + T+I    K G V+   +
Sbjct: 289 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARK 348

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL----- 203
            F E+ + G+  N   Y  +I G  KA  +++A   +  MR+K++ PD + FN L     
Sbjct: 349 YFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHY 408

Query: 204 ----------------------------ITACG--QSGAVDRAFDVLAEMNAEVHPVDPD 233
                                       +T  G   +G  D A  +L  +  +  P  P 
Sbjct: 409 RYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIP--PS 466

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNI---------------------------- 265
            +   +++ A  NAG  +RA   Y ++ K+ +                            
Sbjct: 467 VVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALY 526

Query: 266 ----KGTPEV---YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
               KG P     +T+ ++   + G    A S++++M  +GV PD V  +A I+    +G
Sbjct: 527 DMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISG 586

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
            +  A+++  +   +G       Y+SL+G         +AL+L   M    L P + T+N
Sbjct: 587 LMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVN 646

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            +I  LC   ++   +E   DM  +GL P+ +TY+ L+    +  DV     L+ +  + 
Sbjct: 647 MIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDS 706

Query: 439 GVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLS 470
           G  P+L  +   I G C+ R+  +A  + E ++S
Sbjct: 707 GWEPDLTTYNIRIHGYCTVRKINRAVMILEELIS 740



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/490 (20%), Positives = 205/490 (41%), Gaps = 49/490 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAFRFFKLVPNPT 91
           ++G +       +++E  GL     VY+       K++       + E  R   +VP+  
Sbjct: 339 KEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGI 398

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             TFN L++        E   ++LR +  +GL  D  L    +     +G+ D   ++  
Sbjct: 399 --TFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLE 456

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            ++  GI P+V  + ++I     AG   +AF AYGIM    + P     ++L+ +  + G
Sbjct: 457 NLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKG 516

Query: 212 AVDRAFDVLAEMNAEVHPVD---------------------------------PDHITIG 238
           ++D A+  L +M  +  PV                                  PD +   
Sbjct: 517 SLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFA 576

Query: 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298
           A +     +G +  A +V+  + +        VY   I    + G    A  +  +M K+
Sbjct: 577 AFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKR 636

Query: 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358
           G++PD   ++ +I      G+++ A E   +    G+S  I++Y++L+     A +   A
Sbjct: 637 GLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGA 696

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
            +L   M     +P ++T N  I   C   ++ + + +L ++ S+G+ PNT+TY+ ++ A
Sbjct: 697 DDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINA 756

Query: 419 -CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII------GMCSRRYEKARTLNEHVLSF 471
            C     ++  ++L ++  +   +PN V    ++      GM  +     + L+E  L F
Sbjct: 757 VCNVI--LDHAMILTAKLLKMAFVPNTVTVNVLLSQFCKQGMPEKAIFWGQKLSEIHLDF 814

Query: 472 NSGRPQIENK 481
           +    ++ N+
Sbjct: 815 DETTHKLMNR 824



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 154/373 (41%), Gaps = 11/373 (2%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           + PNP  S  ++L  +   + D    +++   V   G   +   +  LI    + G    
Sbjct: 218 VTPNP--SAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRI 275

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              + H M     EP+V++Y  +I+     GQ + A     +M     KP    F  +I 
Sbjct: 276 GEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIID 335

Query: 206 ACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           A  + G V+ A   FD + +M      +  + I    ++     A  + +A  +++ +  
Sbjct: 336 AFCKEGNVELARKYFDEIEDMG-----LSQNTIVYNIMISGYVKARDISQANLLFEEMRT 390

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
            +I      +   +    + G  E    +  D++  G++ D       +     AG+ + 
Sbjct: 391 KDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDE 450

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A ++L+    +GI   +++++S++ A  NA   ++A   Y  M    L P+ ST ++L+ 
Sbjct: 451 AMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLI 510

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           +L     L +    L DM   G     + +++LL    R   V +   L ++ K  GV P
Sbjct: 511 SLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFP 570

Query: 443 NLVMFKCII-GMC 454
           + V F   I G+C
Sbjct: 571 DAVAFAAFINGLC 583



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L   G +++  D+  DM RKG +  + VY++     CK  K + EA +  + +     
Sbjct: 580 NGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGK-LNEALKLVREMNKRGL 638

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T NM++         + A +    +   GL  D   Y TLI    K+  V    +
Sbjct: 639 LPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADD 698

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  +M ++G EP++ TY   I G     ++ +A      + S  + P+ V +N +I A  
Sbjct: 699 LMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVC 758

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 253
               +D A  + A++        P+ +T+  L+      G  ++A
Sbjct: 759 NV-ILDHAMILTAKLLKMAFV--PNTVTVNVLLSQFCKQGMPEKA 800



 Score = 39.7 bits (91), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
           +LM A   ++   +ALE+   M+ + + P  S ++ L   L          ++  D+   
Sbjct: 192 TLMQAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRK 251

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 463
           G CPN  T+++L++   RK    +G  LL    +    P++  +  +I     + + +  
Sbjct: 252 GPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYA 311

Query: 464 LNEHVLSF---NSGRPQI 478
           L  H+L+    N  +P I
Sbjct: 312 L--HLLNLMIENGCKPSI 327


>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
 gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
          Length = 864

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 125/531 (23%), Positives = 223/531 (41%), Gaps = 41/531 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T++ +++        + A ++++ + +  +  +  +Y TLI    K+GK DA  ++
Sbjct: 329 PNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQNIMPNAYIYATLIDGHLKAGKQDAAVDL 388

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           ++EM   G+E N     A I+   +  ++ +A G    M SK +  DRV + +L+    +
Sbjct: 389 YNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMSKGLLLDRVNYTSLMDGFFK 448

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G    AF  +AE  AE   +  D +    L+      G+ D A  VY  I +  +    
Sbjct: 449 TGRESAAF-TMAEKMAET-GIKFDVVAYNVLINGLLRLGKYD-AESVYSGIRELGLAPDR 505

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   IN   + G  E A  ++++M    V+P+ +  + L+     AG+ E A ++L E
Sbjct: 506 ATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVGGLSKAGETERAIDVLNE 565

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI   +  + +L+ ACS  +     L++++ +  + LK      N+LIT LC    
Sbjct: 566 MLLWGICPNVTIHRALLNACSKCERADTILQMHKRLVGMGLKANREVYNSLITVLCGLGM 625

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK- 448
             +   VL++M   G+  +T+TY+ L+    +   +E  L   +Q   +GV P +  +  
Sbjct: 626 TKRATLVLNNMTKEGISADTVTYNALIHGHFKSSHIEKALATYTQMLNEGVSPGIRTYNL 685

Query: 449 -----CIIGMCSRRYE-----KARTLNEHVLSFN---SGRPQIENKWTSLALMVYREAIV 495
                   G+ S+ YE     K   L+     +N   SG  +I NK    A+  Y E + 
Sbjct: 686 LLGGLLAAGLMSKAYEILSKMKDSGLDPDASLYNTLISGHGKIGNK--KEAIKFYCEMVT 743

Query: 496 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF-------- 547
            G +P     + ++         D    L+  + V       S    LI G+        
Sbjct: 744 KGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQVRRVPPNSSTYDILICGWCNLSKQPE 803

Query: 548 ------GEYDPRAFSLLEEAASFGIVPC--------VSFKEIPVVVDARKL 584
                   Y   A +L  E    G VPC         +F    +VVDA+ +
Sbjct: 804 LDRISKKTYRTEARTLFAEMNEKGFVPCENTLACISSTFARPGMVVDAKHM 854



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 191/428 (44%), Gaps = 20/428 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFK-LVPNPTLS- 93
           + G +S  +DL+ +++    +D+D V Y+   +  C+ Q    + F F   +V   T   
Sbjct: 58  KMGHLSLALDLIRNVD----IDVDTVTYNTAIWGFCQ-QGLANQGFGFLSIMVKKDTFFD 112

Query: 94  --TFNMLM-SVCASSKDSEGAFQVLRLVQE-------AGLKADCKLYTTLITTCAKSGKV 143
             T N+L+   C       G + +  L+ +         L+ +   YTTLI+   K   +
Sbjct: 113 SFTCNILVKGFCRIGSVKYGEWVMDNLIDDMNDDDGTTNLEPNLVTYTTLISAYCKQHGL 172

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                ++ EM++ G  P+V TY ++I+G  K G + +A      M    V P+ VV+  L
Sbjct: 173 SEALSLYEEMISDGFLPDVVTYSSIINGLCKRGMLTEAKALLREMDKMGVNPNHVVYAIL 232

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           + +  ++G+   +F   ++M   V  V  D +    L+     AG+ D A  ++  + K 
Sbjct: 233 VDSLFKAGSAWESFIYQSQM--IVCGVSFDLVVCTTLIDGLFKAGKSDEAEAMFCTLAKL 290

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           N       YT  I+   + GD + A S+  DM KK V+P+ V  S++I+     G ++ A
Sbjct: 291 NCIPNNITYTAMIDGYCKLGDMDGAESLLRDMEKKQVVPNVVTYSSIINGYTKKGMLDVA 350

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
             I+++  +Q I      Y++L+     A     A++LY  MK   L+     ++A I  
Sbjct: 351 VRIMKKMLDQNIMPNAYIYATLIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAFINN 410

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
           L  G ++ +   +   M S GL  + + Y+ L+    +         +  +  E G+  +
Sbjct: 411 LKRGRKMEEAEGLCKYMMSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETGIKFD 470

Query: 444 LVMFKCII 451
           +V +  +I
Sbjct: 471 VVAYNVLI 478



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 118/533 (22%), Positives = 229/533 (42%), Gaps = 42/533 (7%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS 100
           ID + D +    L+ + V +    +    Q  + EA   ++ + +    P + T++ +++
Sbjct: 140 IDDMNDDDGTTNLEPNLVTYTTLISAYCKQHGLSEALSLYEEMISDGFLPDVVTYSSIIN 199

Query: 101 -VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
            +C     +E A  +LR + + G+  +  +Y  L+ +  K+G     F    +M+  G+ 
Sbjct: 200 GLCKRGMLTE-AKALLREMDKMGVNPNHVVYAILVDSLFKAGSAWESFIYQSQMIVCGVS 258

Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
            ++     LIDG  KAG+  +A   +  +   N  P+ + + A+I    + G +D A  +
Sbjct: 259 FDLVVCTTLIDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMIDGYCKLGDMDGAESL 318

Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
           L +M  E   V P+ +T  +++      G +D A  + K +   NI     +Y   I+  
Sbjct: 319 LRDM--EKKQVVPNVVTYSSIINGYTKKGMLDVAVRIMKKMLDQNIMPNAYIYATLIDGH 376

Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
            + G  + A  +Y++M   G+  +   + A I+      K+E A  + +   ++G+ +  
Sbjct: 377 LKAGKQDAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEGLCKYMMSKGLLLDR 436

Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK--TMEVL 397
           ++Y+SLM           A  + E M    +K  V   N LI  L    +L K     V 
Sbjct: 437 VNYTSLMDGFFKTGRESAAFTMAEKMAETGIKFDVVAYNVLINGLL---RLGKYDAESVY 493

Query: 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
           S ++ LGL P+  TY+ ++ A  ++  +E  + L ++ K   V+PN +    ++G  S+ 
Sbjct: 494 SGIRELGLAPDRATYNTMINAYCKQGKLENAIKLWNEMKGHSVMPNSITCNILVGGLSKA 553

Query: 458 YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517
            E  R ++                       V  E ++ G  P V +   +L        
Sbjct: 554 GETERAID-----------------------VLNEMLLWGICPNVTIHRALLNACSKCER 590

Query: 518 AD----IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGI 566
           AD    + +RLV  +G+ A+    ++L +++ G G    RA  +L      GI
Sbjct: 591 ADTILQMHKRLV-GMGLKANREVYNSLITVLCGLG-MTKRATLVLNNMTKEGI 641



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 106/465 (22%), Positives = 189/465 (40%), Gaps = 37/465 (7%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           L+  LI     +G V  +++++ EM++ G+ PNV T+  L+    K G ++ A     ++
Sbjct: 13  LWNRLIYQFNATGLVSQVWDLYSEMLSCGVLPNVFTHNILVHAWCKMGHLSLAL---DLI 69

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
           R+ ++  D V +N  I    Q G  ++ F  L+ M  +      D  T   L+K     G
Sbjct: 70  RNVDIDVDTVTYNTAIWGFCQQGLANQGFGFLSIMVKK--DTFFDSFTCNILVKGFCRIG 127

Query: 249 QVDRAREVYKMI--------HKYNIKGTPEVYTIAINC-CSQTGDWEFACSVYDDMTKKG 299
            V     V   +           N++     YT  I+  C Q G  E A S+Y++M   G
Sbjct: 128 SVKYGEWVMDNLIDDMNDDDGTTNLEPNLVTYTTLISAYCKQHGLSE-ALSLYEEMISDG 186

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
            +PD V  S++I+     G +  A  +L+E    G++   + Y+ L+ +   A +  ++ 
Sbjct: 187 FLPDVVTYSSIINGLCKRGMLTEAKALLREMDKMGVNPNHVVYAILVDSLFKAGSAWESF 246

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
                M    +   +     LI  L    +  +   +   +  L   PN ITY+ ++   
Sbjct: 247 IYQSQMIVCGVSFDLVVCTTLIDGLFKAGKSDEAEAMFCTLAKLNCIPNNITYTAMIDGY 306

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ-- 477
            +  D++    LL   ++  V+PN+V +  II      Y K   L+  V        Q  
Sbjct: 307 CKLGDMDGAESLLRDMEKKQVVPNVVTYSSII----NGYTKKGMLDVAVRIMKKMLDQNI 362

Query: 478 IENKWTSLALM--------------VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER 523
           + N +    L+              +Y E  + G      +V   +  L+     +  E 
Sbjct: 363 MPNAYIYATLIDGHLKAGKQDAAVDLYNEMKLNGLEENSFIVDAFINNLKRGRKMEEAEG 422

Query: 524 LVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLEEAASFGI 566
           L + +      L R N  SL+DGF +   +  AF++ E+ A  GI
Sbjct: 423 LCKYMMSKGLLLDRVNYTSLMDGFFKTGRESAAFTMAEKMAETGI 467



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 25/252 (9%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFF 84
           YN LI      G       +L +M ++G+      Y+A      KS   +KA+    +  
Sbjct: 613 YNSLITVLCGLGMTKRATLVLNNMTKEGISADTVTYNALIHGHFKSSHIEKALATYTQML 672

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               +P + T+N+L+    ++     A+++L  ++++GL  D  LY TLI+   K G   
Sbjct: 673 NEGVSPGIRTYNLLLGGLLAAGLMSKAYEILSKMKDSGLDPDASLYNTLISGHGKIGNKK 732

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              + + EMV  G+ P   TY  LI+  AK G++ +A      M+ + V P+   ++ LI
Sbjct: 733 EAIKFYCEMVTKGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQVRRVPPNSSTYDILI 792

Query: 205 TACG-----QSGAVDR---------AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250
             CG     +   +DR         A  + AEMN +     P   T+  +    A  G V
Sbjct: 793 --CGWCNLSKQPELDRISKKTYRTEARTLFAEMNEK--GFVPCENTLACISSTFARPGMV 848

Query: 251 DRAREVYKMIHK 262
             A+ + K ++K
Sbjct: 849 VDAKHMLKDMYK 860


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 166/377 (44%), Gaps = 12/377 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + M++ + A     + A  +   +QE   K D  +Y +LI   +++G+      +  +M+
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
            A I P   TY  +I+ C  AG   KA      M    V PD V  N +++A        
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYS 133

Query: 215 RA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           +A   F+++   N     V  D  T+  ++      GQ   A E++  + +   K  P+V
Sbjct: 134 KAISYFEIMKGAN-----VTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDV 188

Query: 272 --YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             YT  ++     G  E   +++D M  +GV P+ V  ++L+      G    A  I   
Sbjct: 189 VTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNL 248

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K  G+   I+SY+SL+ A   +   +KA E++  MK    KP   + NALI A      
Sbjct: 249 IKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGM 308

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           L + + +L +M+  G+ P+ ++ S LL AC R   +     +L  A+  G+  N V +  
Sbjct: 309 LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNS 368

Query: 450 IIG--MCSRRYEKARTL 464
            I   +    YEKA  L
Sbjct: 369 GIKSYLSFGDYEKALEL 385



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 173/379 (45%), Gaps = 13/379 (3%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    R G+    I+++EDM R  +      Y+    N C +    K+A    K +
Sbjct: 49  YNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYN-NVINACGAAGNWKKALELCKKM 107

Query: 88  P----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P L T N+++S   +      A     +++ A + +D      +I    K G+ 
Sbjct: 108 TENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQC 167

Query: 144 DAMFEVFHEMVNAGIE--PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
               E+F+ M     +  P+V TY +++      GQV      + +M ++ VKP+ V +N
Sbjct: 168 GEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYN 227

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +L+ A    G    A  +   +    + + PD ++  +L+ A   + Q ++AREV+  + 
Sbjct: 228 SLLGAYASRGMHREALAIFNLIKK--NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMK 285

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           K + K     Y   I+     G  + A  +  +M K G+ PD V +S L+   G   ++ 
Sbjct: 286 KNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQIT 345

Query: 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
               IL+ A+++GI +  ++Y+S + +  +  +++KALELY  M+   +KP   T N LI
Sbjct: 346 RIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILI 405

Query: 382 TALCDGDQLPKTMEVLSDM 400
           +      +  +++    DM
Sbjct: 406 SGSSKLGKYTESLRFFEDM 424



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 170/359 (47%), Gaps = 15/359 (4%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  +I   A+  +VD    +F EM     +P+   Y +LI   ++AGQ   A      M
Sbjct: 13  IYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDM 72

Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
               + P R  +N +I ACG +G   +A ++  +M    + V PD +T   ++ A  N  
Sbjct: 73  LRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTE--NGVGPDLVTHNIVLSALKNGA 130

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVF 306
           Q  +A   ++++   N+        I I+C  + G    A  +++ M ++     PD V 
Sbjct: 131 QYSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVT 190

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
            ++++      G+VE    I      +G+   I++Y+SL+GA ++    ++AL ++  +K
Sbjct: 191 YTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIK 250

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426
              L+P + +  +L+ A     Q  K  EV + MK     PN ++Y+ L+ A      ++
Sbjct: 251 KNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLK 310

Query: 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----RYE------KARTLNEHVLSFNSG 474
             + LL + ++DG+ P++V    ++  C R     R E      ++R ++ + +++NSG
Sbjct: 311 EAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSG 369



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 160/367 (43%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P    +N L+   + +     A  ++  +  A +      Y  +I  C  +G      E+
Sbjct: 44  PDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALEL 103

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             +M   G+ P++ T+  ++       Q +KA   + IM+  NV  D    N +I    +
Sbjct: 104 CKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMKGANVTSDTFTLNIIIHCLVK 163

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G    A ++   M        PD +T  ++M +    GQV+  + ++ ++    +K   
Sbjct: 164 IGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNI 223

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +   +  G    A ++++ + K G+ PD V  ++L++  G + + E A E+  +
Sbjct: 224 VAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNK 283

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
            K        +SY++L+ A  +A   ++A+ L   M+   ++P V +++ L+ A     Q
Sbjct: 284 MKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQ 343

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +   +L   +S G+  NT+ Y+  + +     D E  L L +  +E  V P+ V +  
Sbjct: 344 ITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNI 403

Query: 450 IIGMCSR 456
           +I   S+
Sbjct: 404 LISGSSK 410



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 170/399 (42%), Gaps = 23/399 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T+  +M         E    +  L+   G+K +   Y +L+   A  G       +
Sbjct: 186 PDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAI 245

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F+ +   G+ P++ +Y +L++   ++ Q  KA   +  M+  + KP++V +NALI A G 
Sbjct: 246 FNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGS 305

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           +G +  A  +L EM  E   + PD ++I  L+ AC    Q+ R   + +      I    
Sbjct: 306 AGMLKEAVGLLHEM--EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNT 363

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   I      GD+E A  +Y  M +  V PD V  + LI  +   GK   +    ++
Sbjct: 364 VAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFED 423

Query: 330 AKNQGIS-----VGIISY-SSLMGACSN-----AKNWQKALELYEHMKSIKLKPTVSTMN 378
             +  +S     +  I +    +G          ++W+ A E+ E++ S     +V T+N
Sbjct: 424 MVDSKVSSTKEFLWTIRWLEESLGPVQRDGSKWIRDWKTASEMIEYLDSSLSSISVGTLN 483

Query: 379 ALITALCDGDQLPKTMEVLSDM----KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            ++  L    +    M++   M     ++GL    +    LLV  + +  +EV    L  
Sbjct: 484 HVLNFLGKCGKTENMMKLFYKMVTSCSTVGLSTYAVVLRNLLVVGKWRKYIEV----LQW 539

Query: 435 AKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSF 471
            ++ GV P L MF+ ++    R    + A T+ E + S 
Sbjct: 540 MEDSGVHPTLYMFQNVLPYIWRENGMDFAATMQEKISSL 578



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%)

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
           ++Y + I   ++    + A  ++ +M +    PD    ++LI     AG+   A  I+++
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
                I     +Y++++ AC  A NW+KALEL + M    + P + T N +++AL +G Q
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILL 416
             K +     MK   +  +T T +I++
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIII 158


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 170/379 (44%), Gaps = 43/379 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P + T N+L++     +    AF VL  + + G + +   + TLI      GK+  +  +
Sbjct: 92  PNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHL 151

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F +M+  G +PNV TYG LI+G  K G  + A      M   N +PD VV+ ++I +  +
Sbjct: 152 FDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 211

Query: 210 SGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
              V +AF++ +EM   +H  + P   T  +L+ A  N                      
Sbjct: 212 DRQVTQAFNLFSEM---IHQGISPSIFTYNSLIHALCNL--------------------- 247

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
                     C    +W+   ++ ++M    ++P+ V  S ++D     GKV  A +++ 
Sbjct: 248 ----------C----EWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVD 293

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
               +G+   +++Y++LM          +A+++++ M      P V + + LI   C   
Sbjct: 294 MMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQ 353

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ K M +  +M    L PNT+TYS L+        ++  + L  +    G IP+ V + 
Sbjct: 354 RIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY- 412

Query: 449 CII--GMC-SRRYEKARTL 464
           CI+   +C +RR ++A  L
Sbjct: 413 CILLDYLCKNRRLDEAIAL 431



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 173/403 (42%), Gaps = 50/403 (12%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K I E F+       P + T+  L++       +  A ++LR +++   + D  +YT++I
Sbjct: 154 KMIGEGFQ-------PNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSII 206

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +  K  +V   F +F EM++ GI P++ TY +LI       +          M +  + 
Sbjct: 207 DSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIM 266

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ V+F+ ++ A  + G V  A DV+  M      V+P+ +T  ALM       ++D A 
Sbjct: 267 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKR--GVEPNVVTYNALMDGHCLRSEMDEAV 324

Query: 255 EVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +V+  +     KG  P+V  Y+  IN   +    E A  ++++M +K +IP+ V  S L+
Sbjct: 325 KVFDTM---VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLM 381

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG-ACSN------------------- 351
               H G+++ A  +  E   +G     +SY  L+   C N                   
Sbjct: 382 HGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMD 441

Query: 352 ---------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
                          A   + A +L+ ++ S  L P V T   +I  LC    L +  ++
Sbjct: 442 PDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKL 501

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
             +MK  G  PN  TY+++     R ++   G+ LL +    G
Sbjct: 502 FGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARG 544



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 171/406 (42%), Gaps = 42/406 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G  S  I LL  ME+        VY +   ++CK ++ + +AF  F  + +   
Sbjct: 172 NGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ-VTQAFNLFSEMIHQGI 230

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P++ T+N L+    +  + +    +L  +  + +  +  +++T++    K GKV    +
Sbjct: 231 SPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHD 290

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V   M+  G+EPNV TY AL+DG     ++ +A   +  M  K   PD V ++ LI    
Sbjct: 291 VVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYC 350

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV------------------ 250
           +   +++A  +  EM  +   + P+ +T   LM    + G++                  
Sbjct: 351 KIQRIEKAMYLFEEMCRK--ELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPD 408

Query: 251 -----------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
                            D A  + K I   N+    ++YTI I+   + G+ E A  ++ 
Sbjct: 409 FVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFS 468

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +++ KG+ P+    + +I+     G +  A ++  E K +G S    +Y+ +        
Sbjct: 469 NLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNN 528

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
              + ++L + M +      VST   L+  L D        ++LS+
Sbjct: 529 ETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQILSE 574



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 152/387 (39%), Gaps = 57/387 (14%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +T L+ +  K      +  + H+M + GI PN++T   LI+      ++  AF     + 
Sbjct: 62  FTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKIL 121

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               +P+   FN LI      G +     +  +M  E     P+ +T G L+      G 
Sbjct: 122 KLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGE--GFQPNVVTYGTLINGLCKVGS 179

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
              A  + + + + N +                                   PD V  ++
Sbjct: 180 TSAAIRLLRSMEQGNCQ-----------------------------------PDVVVYTS 204

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           +ID      +V  AF +  E  +QGIS  I +Y+SL+ A  N   W+    L   M + K
Sbjct: 205 IIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSK 264

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           + P V   + ++ ALC   ++ +  +V+  M   G+ PN +TY+ L+     + +++  +
Sbjct: 265 IMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAV 324

Query: 430 MLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 487
            +       G  P++V +  +I G C  +R EKA  L E +      +  I N  T   L
Sbjct: 325 KVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR----KELIPNTVTYSTL 380

Query: 488 M--------------VYREAIVAGTIP 500
           M              ++ E +  G IP
Sbjct: 381 MHGLCHVGRLQDAIALFHEMVTRGQIP 407


>gi|299469706|emb|CBN76560.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 915

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 7/308 (2%)

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            E+  EM   G  PN   Y + I  CA+A     A      MR   V P+ VV NA + A
Sbjct: 347 LELIQEMRREGPSPNSQCYASAITACARAHDPRSAMRLLADMREDGVPPNDVVLNAAVDA 406

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
           CG+  A D A  +L  M  + + V P+ +T  + +   + AG   RARE   ++++ + +
Sbjct: 407 CGKGDAPDEALKLLRGME-KAYGVKPNTVTFNSAISGLSRAG---RAREAKALLNEMSER 462

Query: 267 G-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
           G  P+ ++   A+   +  GD     S+ D+M  +G+  D V     +     AG V+ A
Sbjct: 463 GLKPDNFSFNAAMQGFAAAGDPRNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKGA 522

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
            ++L+E +  G+    + Y+S + AC  A   + A +L   M    +    ++    I A
Sbjct: 523 LKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRKMGETGVVRDATSYTGAIVA 582

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
                   K +E L  M   G+ P  ITY+  + AC R  +      LL++ +  GV PN
Sbjct: 583 CSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAACGRSGNDRQAEWLLNEMRGQGVTPN 642

Query: 444 LVMFKCII 451
            + +   +
Sbjct: 643 RISYSAAM 650



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 162/362 (44%), Gaps = 6/362 (1%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + S  A  K +    + L L+QE    G   + + Y + IT CA++    +   +  +M 
Sbjct: 330 IASAVADPKPTRAHEKALELIQEMRREGPSPNSQCYASAITACARAHDPRSAMRLLADMR 389

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFG-AYGIMRSKNVKPDRVVFNALITACGQSGAV 213
             G+ PN     A +D C K     +A     G+ ++  VKP+ V FN+ I+   ++G  
Sbjct: 390 EDGVPPNDVVLNAAVDACGKGDAPDEALKLLRGMEKAYGVKPNTVTFNSAISGLSRAGRA 449

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A  +L EM+     + PD+ +  A M+  A AG       +   +    I      Y 
Sbjct: 450 REAKALLNEMSE--RGLKPDNFSFNAAMQGFAAAGDPRNTASLSDEMKSRGIGMDVVSYG 507

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
            A++ C++ GD + A  +  +M + GV P+ V  ++ +D  G AGK + A ++L++    
Sbjct: 508 TAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRKMGET 567

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
           G+     SY+  + ACS   +  KALE  E M    + P   T N  + A        + 
Sbjct: 568 GVVRDATSYTGAIVACSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAACGRSGNDRQA 627

Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
             +L++M+  G+ PN I+YS  + A  +   +   L LL +   +GV  + V +   +  
Sbjct: 628 EWLLNEMRGQGVTPNRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEADEVTYHIAVDA 687

Query: 454 CS 455
            S
Sbjct: 688 AS 689



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 165/368 (44%), Gaps = 3/368 (0%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +KA++      +  P+P    +   ++ CA + D   A ++L  ++E G+  +  +    
Sbjct: 344 EKALELIQEMRREGPSPNSQCYASAITACARAHDPRSAMRLLADMREDGVPPNDVVLNAA 403

Query: 134 ITTCAKSGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           +  C K    D   ++   M  A G++PN  T+ + I G ++AG+  +A      M  + 
Sbjct: 404 VDACGKGDAPDEALKLLRGMEKAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSERG 463

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           +KPD   FNA +     +G       +  EM +    +  D ++ G  + ACA AG V  
Sbjct: 464 LKPDNFSFNAAMQGFAAAGDPRNTASLSDEMKS--RGIGMDVVSYGTAVSACAKAGDVKG 521

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A ++ K + +  ++    VY  A++ C + G  + A  +   M + GV+ D    +  I 
Sbjct: 522 ALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRKMGETGVVRDATSYTGAIV 581

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                G  + A E L+    +GI+   I+Y+  M AC  + N ++A  L   M+   + P
Sbjct: 582 ACSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAACGRSGNDRQAEWLLNEMRGQGVTP 641

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              + +A + AL    +LP  + +L +M   G+  + +TY I + A     D+   + L 
Sbjct: 642 NRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEADEVTYHIAVDAASIARDLGCAMDLF 701

Query: 433 SQAKEDGV 440
            + +  G+
Sbjct: 702 REMRARGL 709



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 155/335 (46%), Gaps = 8/335 (2%)

Query: 44  CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-----PTLSTFNML 98
            + LL DM   G+   D V +A   + C    A  EA +  + +       P   TFN  
Sbjct: 381 AMRLLADMREDGVPPNDVVLNA-AVDACGKGDAPDEALKLLRGMEKAYGVKPNTVTFNSA 439

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
           +S  + +  +  A  +L  + E GLK D   +   +   A +G       +  EM + GI
Sbjct: 440 ISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDPRNTASLSDEMKSRGI 499

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
             +V +YG  +  CAKAG V  A      M+   V+P+ VV+N+ + ACG++G    A  
Sbjct: 500 GMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEK 559

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           +L +M  E   V       GA++ AC+  G  D+A E  + + K  I      Y  A+  
Sbjct: 560 LLRKMG-ETGVVRDATSYTGAIV-ACSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAA 617

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
           C ++G+   A  + ++M  +GV P+ +  SA +   G AG++     +L+E   +G+   
Sbjct: 618 CGRSGNDRQAEWLLNEMRGQGVTPNRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEAD 677

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373
            ++Y   + A S A++   A++L+  M++  L  T
Sbjct: 678 EVTYHIAVDAASIARDLGCAMDLFREMRARGLPVT 712



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 157/370 (42%), Gaps = 40/370 (10%)

Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK--------- 174
           + D   Y   I  C K+G+      +  EM    ++P+V  +G+ I    +         
Sbjct: 254 RPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFGSAIFALGEVAGTQNRST 313

Query: 175 -----------------AGQVA---------KAFGAYGIMRSKNVKPDRVVFNALITACG 208
                            A  VA         KA      MR +   P+   + + ITAC 
Sbjct: 314 WGRKGADEGGEGGDKPIASAVADPKPTRAHEKALELIQEMRREGPSPNSQCYASAITACA 373

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-YNIKG 267
           ++     A  +LA+M  +  P  P+ + + A + AC      D A ++ + + K Y +K 
Sbjct: 374 RAHDPRSAMRLLADMREDGVP--PNDVVLNAAVDACGKGDAPDEALKLLRGMEKAYGVKP 431

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               +  AI+  S+ G    A ++ ++M+++G+ PD    +A +     AG       + 
Sbjct: 432 NTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDPRNTASLS 491

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E K++GI + ++SY + + AC+ A + + AL+L + M+   ++P     N+ + A C  
Sbjct: 492 DEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDA-CGR 550

Query: 388 DQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              PK  E +L  M   G+  +  +Y+  +VAC R  D +  L  L    ++G+ P  + 
Sbjct: 551 AGKPKVAEKLLRKMGETGVVRDATSYTGAIVACSRNGDGDKALEWLETMSKEGIAPEAIT 610

Query: 447 FKCIIGMCSR 456
           +   +  C R
Sbjct: 611 YNYAMAACGR 620



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 112/273 (41%), Gaps = 44/273 (16%)

Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWE 286
           +DP  +  G ++   A   ++ +AR+   M+    ++  P+   V T+AI C  Q G W 
Sbjct: 181 LDPQTVEKGKML--AARIKELAKARDFEGMLEA--LEEGPKNAIVCTVAITCLGQAGKWR 236

Query: 287 FACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
            A  V D M K G     PD    +A I+  G AG+   A  +L E   + +   ++ + 
Sbjct: 237 EAVEVLDGMGKGGDGSDRPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFG 296

Query: 344 SLM------GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP-----K 392
           S +          N   W +  +  +       KP  S +          D  P     K
Sbjct: 297 SAIFALGEVAGTQNRSTWGR--KGADEGGEGGDKPIASAV---------ADPKPTRAHEK 345

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452
            +E++ +M+  G  PN+  Y+  + AC R  D    + LL+  +EDGV PN V+    + 
Sbjct: 346 ALELIQEMRREGPSPNSQCYASAITACARAHDPRSAMRLLADMREDGVPPNDVVLNAAVD 405

Query: 453 MCS------------RRYEKARTLNEHVLSFNS 473
            C             R  EKA  +  + ++FNS
Sbjct: 406 ACGKGDAPDEALKLLRGMEKAYGVKPNTVTFNS 438


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 175/434 (40%), Gaps = 78/434 (17%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK------------DSEG 110
           +H++  N      A+    R   + P P+   FN L++  A +K            DS G
Sbjct: 40  FHSKSLNFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFG 99

Query: 111 -----------------------AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
                                  AF VL  + + G + D   +TTLI      GK+    
Sbjct: 100 IPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDAL 159

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
            +F +M+  G +PNV TYG LI+G  K G    A      M   N +PD VV+ ++I + 
Sbjct: 160 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 219

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            +   V  AF++ ++M  +   + PD  T  +L+ +  N  +                  
Sbjct: 220 CKDRQVTEAFNLFSKMVGQ--GISPDIFTYTSLIHSLCNLCE------------------ 259

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
                            W+   ++ + M    ++PD V  S ++D     GK+  A +++
Sbjct: 260 -----------------WKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVV 302

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
                +G+   +++Y++LM          +A+++++ M      P V + N LI   C  
Sbjct: 303 DMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKI 362

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACE--RKDDVEVGLMLLSQAKEDGVIPNLV 445
            ++ K   +  +M    L PNT+TY+ L+  C   R  D    + L  +    G IP+L 
Sbjct: 363 QRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQD---AIALFHEMVAHGQIPDLA 419

Query: 446 MFKCIIG-MCSRRY 458
            ++ ++  +C + +
Sbjct: 420 TYRILLDYLCKKSH 433



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 173/379 (45%), Gaps = 16/379 (4%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K I E F+       P + T+  L++      ++  A ++LR +++   + D  +YT++I
Sbjct: 164 KMIGEGFQ-------PNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSII 216

Query: 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194
            +  K  +V   F +F +MV  GI P++ TY +LI       +          M +  + 
Sbjct: 217 DSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIM 276

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           PD V+F+ ++ A  + G +  A DV+  M   +  V+P+ +T  ALM       ++D A 
Sbjct: 277 PDVVIFSTVVDALCKEGKITEAHDVVDMM--IIRGVEPNVVTYNALMDGHCLQSEMDEAV 334

Query: 255 EVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
           +V+  M+H       P V  Y   IN   +    + A  ++++M +K +IP+ V  + L+
Sbjct: 335 KVFDTMVHN---GYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLM 391

Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371
               H G+++ A  +  E    G    + +Y  L+       +  +A+ L + ++   + 
Sbjct: 392 HXC-HVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMD 450

Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           P +     +I  +C   +L    ++ S++ S GL PN  TY+I++    R+  ++    L
Sbjct: 451 PDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKL 510

Query: 432 LSQAKEDGVIPNLVMFKCI 450
             +   +G  P+   +  I
Sbjct: 511 FMEMDGNGCSPDGCTYNTI 529



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 156/369 (42%), Gaps = 13/369 (3%)

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +D     F+ M++    P+   +  L+   AK  Q    F     M S  + PD    N 
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           LI +      +  AF VLA++    H   PD  T   L++     G++  A  ++  +  
Sbjct: 110 LINSFCHLNRLGFAFSVLAKILKLGH--QPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 167

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
              +     Y   IN   + G+   A  +   M +    PD V  +++ID      +V  
Sbjct: 168 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTE 227

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           AF +  +   QGIS  I +Y+SL+ +  N   W+    L   M + K+ P V   + ++ 
Sbjct: 228 AFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVD 287

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           ALC   ++ +  +V+  M   G+ PN +TY+ L+     + +++  + +      +G  P
Sbjct: 288 ALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAP 347

Query: 443 NLVMFKCII-GMCS-RRYEKARTLNE---------HVLSFNSGRPQIENKWTSLALMVYR 491
           N++ +  +I G C  +R +KA  L E         + +++N+            A+ ++ 
Sbjct: 348 NVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIALFH 407

Query: 492 EAIVAGTIP 500
           E +  G IP
Sbjct: 408 EMVAHGQIP 416



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 179/406 (44%), Gaps = 43/406 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N L + G  +  I LL  ME+        VY +   ++CK ++ + EAF  F K+V    
Sbjct: 182 NGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQ-VTEAFNLFSKMVGQGI 240

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+  L+    +  + +    +L  +  + +  D  +++T++    K GK+    +
Sbjct: 241 SPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHD 300

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           V   M+  G+EPNV TY AL+DG     ++ +A   +  M      P+ + +N LI    
Sbjct: 301 VVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYC 360

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC---------------ANAGQV--- 250
           +   +D+A  +  EM  +   + P+ +T   LM  C                  GQ+   
Sbjct: 361 KIQRMDKATYLFEEMCQK--ELIPNTVTYNTLMHXCHVGRLQDAIALFHEMVAHGQIPDL 418

Query: 251 ----------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
                           D A  + K I   N+    ++YTI I+   + G+ E A  ++ +
Sbjct: 419 ATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSN 478

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           ++ KG+ P+    + +I+     G ++ A ++  E    G S    +Y+++       K 
Sbjct: 479 LSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKE 538

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM-EVLSD 399
             +A++L + M +      VST   L+  LCD D+L +++ ++LS+
Sbjct: 539 ALRAIQLLQEMLARGFSADVSTTTLLVEMLCD-DKLDQSVKQILSE 583



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 104/227 (45%), Gaps = 12/227 (5%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H  YA +V     SYN LI    +  R+ +   L E+M +K L+  + V +    + C  
Sbjct: 342 HNGYAPNVI----SYNTLINGYCKIQRMDKATYLFEEMCQKELIP-NTVTYNTLMHXCHV 396

Query: 74  QKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
            +       F ++V +   P L+T+ +L+         + A  +L+ ++ + +  D ++Y
Sbjct: 397 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIY 456

Query: 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190
           T +I    ++G+++A  ++F  + + G+ PNV TY  +I+G  + G + +A   +  M  
Sbjct: 457 TIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDG 516

Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
               PD   +N +     Q+    RA  +L EM A     D    T+
Sbjct: 517 NGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTL 563


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 162/363 (44%), Gaps = 2/363 (0%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+N L+         +    +   +++A    D   Y  LI    K  ++   FE
Sbjct: 287 TPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFE 346

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
             HEM   G++PNV TY   ID   K G + +A   +  MR   + P+   + +LI A  
Sbjct: 347 FLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANC 406

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G +  A  ++ E+      +  + +T  AL+      G++  A EV++ +    +   
Sbjct: 407 KAGNLAEALKLVEEILQA--GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 464

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
            E YT  ++   +  + E+A  +  +M +K + PD +    ++    +  ++E A  ++ 
Sbjct: 465 QETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIG 524

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E K  GI+   + Y++LM A   +    +AL L E M  + L  T  T  ALI  LC   
Sbjct: 525 EIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSG 584

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
            + + M     M  +GL PN   Y+ L+    + +  EV   L  +  + G++P+ + + 
Sbjct: 585 LVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYT 644

Query: 449 CII 451
            +I
Sbjct: 645 ALI 647



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 196/429 (45%), Gaps = 11/429 (2%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D    + +YN LI    +  R+ +  + L +M+  GL   + V ++ F +    +  ++E
Sbjct: 320 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGL-KPNVVTYSTFIDAFCKEGMLQE 378

Query: 80  AFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A +FF    ++   P   T+  L+     + +   A +++  + +AG+K +   YT L+ 
Sbjct: 379 AIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLD 438

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              + G++    EVF  M+NAG+ PN  TY AL+ G  KA ++  A      M+ K +KP
Sbjct: 439 GLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKP 498

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           D +++  ++        ++ A  ++ E+      ++ + +    LM A   +GQ   A  
Sbjct: 499 DLLLYGTILWGLCNESRLEEAKLLIGEIKES--GINTNAVIYTTLMDAYFKSGQATEALT 556

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           + + +    +  T   Y   I+   ++G  + A   +  M++ G+ P+    +AL+D   
Sbjct: 557 LLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLC 616

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
                E A ++  E  ++G+    I+Y++L+       N Q+AL L + M  I ++  + 
Sbjct: 617 KNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLH 676

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
              ALI  L    Q+ K   +L +M   G+ P+ + Y  L+        V+  L L ++ 
Sbjct: 677 AYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEM 736

Query: 436 KEDGVIPNL 444
            + G+I  L
Sbjct: 737 AKRGMITGL 745



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 206/460 (44%), Gaps = 19/460 (4%)

Query: 2   QDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLL 57
           ++G   M +  +   K A +  D+     +YN LI    + G + ECI + E M +    
Sbjct: 267 KEGDLEMARSLFTQMKEAGFTPDIV----TYNSLIDGHGKLGLLDECICIFEQM-KDADC 321

Query: 58  DMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAF 112
           D D + +    N  CK ++  K AF F   +      P + T++  +         + A 
Sbjct: 322 DPDVITYNALINCFCKFERMPK-AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 380

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172
           +    ++   L  +   YT+LI    K+G +    ++  E++ AGI+ NV TY AL+DG 
Sbjct: 381 KFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGL 440

Query: 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
            + G++ +A   +  M +  V P++  + AL+    ++  ++ A D+L EM  +   + P
Sbjct: 441 CEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKC--IKP 498

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
           D +  G ++    N  +++ A+ +   I +  I     +YT  ++   ++G    A ++ 
Sbjct: 499 DLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLL 558

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSN 351
           ++M   G+I  EV   ALID    +G V+ A          G+   +  Y++L+ G C N
Sbjct: 559 EEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKN 618

Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
              ++ A +L++ M    + P      ALI        L + + +   M  +G+  +   
Sbjct: 619 -NCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHA 677

Query: 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           Y+ L+        V+    LL +    GV+P+ V++ C+I
Sbjct: 678 YTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLI 717



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 148/319 (46%), Gaps = 2/319 (0%)

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+   +K G+ D   + F +M  AGI+ +V TY  +ID   K G +  A   +  M+   
Sbjct: 226 LLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAG 285

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
             PD V +N+LI   G+ G +D    +  +M       DPD IT  AL+       ++ +
Sbjct: 286 FTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA--DCDPDVITYNALINCFCKFERMPK 343

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
           A E    +    +K     Y+  I+   + G  + A   + DM +  + P+E   ++LID
Sbjct: 344 AFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLID 403

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
               AG +  A ++++E    GI + +++Y++L+         ++A E++  M +  + P
Sbjct: 404 ANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP 463

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
              T  AL+       ++    ++L +MK   + P+ + Y  +L     +  +E   +L+
Sbjct: 464 NQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLI 523

Query: 433 SQAKEDGVIPNLVMFKCII 451
            + KE G+  N V++  ++
Sbjct: 524 GEIKESGINTNAVIYTTLM 542



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 142/293 (48%), Gaps = 6/293 (2%)

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P   VF+AL +A  + G ++ A +   +M      V P   +  AL+   +  G+ D +R
Sbjct: 183 PGFGVFDALFSALIELGMLEEASECFLKMRK--FRVFPKPRSCNALLHRLSKVGRGDLSR 240

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
           + +K +    IK +   Y I I+   + GD E A S++  M + G  PD V  ++LID  
Sbjct: 241 KFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 300

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
           G  G ++    I ++ K+      +I+Y++L+      +   KA E    MK+  LKP V
Sbjct: 301 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNV 360

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T +  I A C    L + ++   DM+ + L PN  TY+ L+ A  +  ++   L L+ +
Sbjct: 361 VTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEE 420

Query: 435 AKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSL 485
             + G+  N+V +  ++ G+C   R ++A  +   +L  N+G    +  +T+L
Sbjct: 421 ILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAML--NAGVAPNQETYTAL 471


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 179/447 (40%), Gaps = 60/447 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L R  R  E   +L++ME+ G+   + +Y+      C+ +    +A R F  +     
Sbjct: 89  NGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCR-KGHCSQALRLFDEMVLKKM 147

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT---------------- 132
            PT  T+N++        + E A ++L  +   G+   C L+ T                
Sbjct: 148 KPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVV 207

Query: 133 ----------------LITTC----AKSGK----VDAMFE-------------VFHEMVN 155
                           L+T C     K GK    V   F+             V   M+N
Sbjct: 208 SITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGKYMKEATKVIQTMLN 267

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
            GIE +  TY  +I GC K  ++ +A   +G M  +  KPD   FN L+ A    G ++ 
Sbjct: 268 KGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLGKMEE 327

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
            F +L +M  E   + PD ++ G ++     A  + +A+E    +    +K    +Y   
Sbjct: 328 TFHLLDQMKTE--GLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYNAL 385

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I    + GD   A    + M   G+ P  V   +L+ +  HAG VE A  I  +A+   +
Sbjct: 386 IGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEAKTIFSQARENNV 445

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
            +G+I Y+ ++          +A+  +E M+S  + P   T   L+ A        +  +
Sbjct: 446 DLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLMYAYSKSGNSEEASK 505

Query: 396 VLSDMKSLGLCPNTITYSILLVACERK 422
           +  +M   G+ P+ ITY  L+  C  K
Sbjct: 506 LFDEMVGSGVIPDNITYGTLIARCSEK 532



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 119/508 (23%), Positives = 197/508 (38%), Gaps = 74/508 (14%)

Query: 63  YHARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           Y A    +CK+ K     +     ++    PT+ T+N+LM     S   E AF++   ++
Sbjct: 14  YTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRME 73

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179
           + G+      +  LI   A+  +   +  V  EM   G+ PN   Y  LI    + G  +
Sbjct: 74  QGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCS 133

Query: 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM---NAEVH-------- 228
           +A   +  M  K +KP  V +N +  A  + G ++RA  +L +M      VH        
Sbjct: 134 QALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVV 193

Query: 229 --------------------------PVDP--------------DHITIGALMKACANAG 248
                                     P DP                  +G   K      
Sbjct: 194 AWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGK 253

Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
            +  A +V + +    I+     Y I I  C +    E A  ++ DMT++G  PD    +
Sbjct: 254 YMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFN 313

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
            L+    + GK+E  F +L + K +G+   I+SY +++     AK+ +KA E    +   
Sbjct: 314 TLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDR 373

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            LKP V   NALI        +   ++ +  MKS G+ P  +TY  L+        VE  
Sbjct: 374 GLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHAGLVEEA 433

Query: 429 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ--IENKWTSLA 486
             + SQA+E+ V   ++ +  +I    + Y K   + E V  F   R +    NK T   
Sbjct: 434 KTIFSQARENNVDLGVIGYTIMI----QGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTT 489

Query: 487 LM--------------VYREAIVAGTIP 500
           LM              ++ E + +G IP
Sbjct: 490 LMYAYSKSGNSEEASKLFDEMVGSGVIP 517



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 7/147 (4%)

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           ++E++N  +++   SY++++ A   A       E+   +    L+PTV T N L+ ALC 
Sbjct: 1   MRESRN--VALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCK 58

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLSQAKEDGVIPNLV 445
             ++ +   +   M+  G+ P+ +T+ IL+    R +   EVG+ +L + ++ GV PN V
Sbjct: 59  SGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGI-VLQEMEQLGVSPNEV 117

Query: 446 MFKCIIGMCSRR---YEKARTLNEHVL 469
           ++  +IG   R+    +  R  +E VL
Sbjct: 118 IYNELIGWHCRKGHCSQALRLFDEMVL 144



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    R G IS  ID +E M+  G+   +  Y +  + +C +   ++EA   F   
Sbjct: 382 YNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHA-GLVEEAKTIFSQA 440

Query: 88  P--NPTLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
              N  L       M+   C   K  E A      ++  G+  +   YTTL+   +KSG 
Sbjct: 441 RENNVDLGVIGYTIMIQGYCKLGKMVE-AVAYFEEMRSRGISPNKLTYTTLMYAYSKSGN 499

Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
            +   ++F EMV +G+ P+  TYG LI  C++ G     +G
Sbjct: 500 SEEASKLFDEMVGSGVIPDNITYGTLIARCSEKGGKTTQYG 540


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 195/464 (42%), Gaps = 19/464 (4%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           +P P+ + F  L+   +S+   + A +    + +   +    +Y  +       G +   
Sbjct: 140 LPAPS-AAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLA 198

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
             +++ MV++G  PN  TY  L+DG  K G    A   +  M  + + PD  ++  L+++
Sbjct: 199 LALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSS 258

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
               G ++ A  +L  M     P  PD +T    +     AG+VD A   ++++      
Sbjct: 259 LCNEGRIEDAGRLLCSMKENGCP--PDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFT 316

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+  I+   Q G ++   S Y +M  K + PD    + LI     AG+ + AF +
Sbjct: 317 LGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLL 376

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
           L E K++G       Y++L+ A  +  N  +A  L   M    +    +T N +I  LC 
Sbjct: 377 LDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCK 436

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              + K M+V  +M   G  P  +TY+ L+    R   +E   ML  +  E G  P+L +
Sbjct: 437 KGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHKM-EMGNNPSLFL 495

Query: 447 FKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVS 506
              +     R  E  R L + +    SG  Q+   +  L     R  I +G +P V   +
Sbjct: 496 RLTLGANQVRDTESLRKLVDGMC--QSG--QVLKAYKLL-----RGIIESGVVPDVVTYN 546

Query: 507 KVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGF 547
            ++  L    N D   RL + L   G+S D +      +LIDG 
Sbjct: 547 TLINGLCKAKNLDGALRLFKELQLKGISPDEITYG---TLIDGL 587



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/450 (23%), Positives = 187/450 (41%), Gaps = 18/450 (4%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           +  L+ +G I   + L   M   G L     Y      +CK   A+     F +++    
Sbjct: 186 FQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGI 245

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  + +L+S   +    E A ++L  ++E G   D   YT  ++   K+G+VD  F 
Sbjct: 246 VPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFH 305

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
            F  + + G    +  Y  LIDG  +AG+  +    Y  M  K++ PD  ++  LI    
Sbjct: 306 RFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFA 365

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++G    AF +L EM  +     PD      L+KA  + G +DRA+ +   + + N+   
Sbjct: 366 EAGRTKDAFLLLDEMKDK--GFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLD 423

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA---FE 325
              + I I    + G  + A  V+D+M + G  P  +  +ALID    AG +E A   F 
Sbjct: 424 STTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFH 483

Query: 326 ILQEAKNQGISVGII----------SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            ++   N  + + +           S   L+     +    KA +L   +    + P V 
Sbjct: 484 KMEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVV 543

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N LI  LC    L   + +  +++  G+ P+ ITY  L+    R        ML    
Sbjct: 544 TYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNI 603

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKARTLN 465
              G  P+L ++  ++    R  + ++ +N
Sbjct: 604 LRSGGFPSLPIYNTMMRSLCRMKKLSQAIN 633



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 159/390 (40%), Gaps = 36/390 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L  +GRI +   LL  M+  G    +  Y      +CK+ + + EAF  F+L+ +   + 
Sbjct: 259 LCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGR-VDEAFHRFELLQDGGFT- 316

Query: 95  FNMLMSVCASSKDSEGAFQVLRL---------VQEAGLKADCKLYTTLITTCAKSGKVDA 145
               + +   S   +G FQ  R          +    +  D  LYT LI   A++G+   
Sbjct: 317 ----LGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKD 372

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
            F +  EM + G  P+   Y  L+      G + +A      M   NV  D    N +I 
Sbjct: 373 AFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMIC 432

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
              + G +D+A  V  EM    H   P  +T  AL+     AG ++ AR ++   HK  +
Sbjct: 433 GLCKKGLIDKAMQVFDEMGE--HGCHPTVMTYNALIDGLYRAGMLEEARMLF---HKMEM 487

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDM----------------TKKGVIPDEVFLSA 309
              P ++       +Q  D E    + D M                 + GV+PD V  + 
Sbjct: 488 GNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNT 547

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LI+    A  ++ A  + +E + +GIS   I+Y +L+     A     A  L++++    
Sbjct: 548 LINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSG 607

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSD 399
             P++   N ++ +LC   +L + + +  D
Sbjct: 608 GFPSLPIYNTMMRSLCRMKKLSQAINLWLD 637



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 134/313 (42%), Gaps = 3/313 (0%)

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
           AMF+   +   AG+      + AL+   + AG+  +A  A+  M   + +P   V+NA+ 
Sbjct: 127 AMFDALADARAAGLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVF 186

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
                 G +  A  +   M +      P+  T   LM      G    A +++  + +  
Sbjct: 187 QVLVDRGVILLALALYNRMVSS--GCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERG 244

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324
           I    ++YT+ ++     G  E A  +   M + G  PDEV  +  +     AG+V+ AF
Sbjct: 245 IVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAF 304

Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
              +  ++ G ++G+I YS L+     A  + + L  Y  M    + P ++    LI   
Sbjct: 305 HRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRF 364

Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
            +  +      +L +MK  G  P+T  Y+ LL A     +++    L+S+  ++ V+ + 
Sbjct: 365 AEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDS 424

Query: 445 VMFKCII-GMCSR 456
                +I G+C +
Sbjct: 425 TTHNIMICGLCKK 437



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           A+++LR + E+G+  D   Y TLI    K+  +D    +F E+   GI P+  TYG LID
Sbjct: 526 AYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDEITYGTLID 585

Query: 171 GCAKAGQVAKAFGAY-GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229
           G  +A +   A   +  I+RS    P   ++N ++ +  +   + +A ++  +   + + 
Sbjct: 586 GLWRAHRENDATMLFQNILRSGGF-PSLPIYNTMMRSLCRMKKLSQAINLWLDYLPKKYN 644

Query: 230 VDPDHITIGALMKACANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288
           + P+   I A  + C   G +D   +E+ K+   Y     P  YTI +    Q    + A
Sbjct: 645 LSPEDEVI-ANARKCFEDGFLDETVKELIKIDQVYG-SLNPNPYTIWVIGLCQVRKIDDA 702

Query: 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
             ++  + + G++      + LI++      + AA +I+
Sbjct: 703 LRIFHILEEFGIVVTPACCALLINYLCWDRNLNAAVDIM 741


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 163/363 (44%), Gaps = 16/363 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P  ST++ ++     +   E AF +   ++  G+      YT LI +  K+G +    + 
Sbjct: 458 PDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKW 517

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM++ G  PNV TY ALI    KA Q+  A   + +M  +  KP+ V + ALI    +
Sbjct: 518 FDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCK 577

Query: 210 SGAVDRAFDVLAEMNAEVHPVD--------------PDHITIGALMKACANAGQVDRARE 255
           +G +++A  + A M  ++   D              P+ IT GAL+     A +V  A E
Sbjct: 578 AGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHE 637

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +   +  +  +    VY   I+   + G  + A  V+  M+++G  P+    S+ ID   
Sbjct: 638 LLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLF 697

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTV 374
              +++   ++L +      +  ++ Y+ ++ G C   K   +A +L   M+     P V
Sbjct: 698 KDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKT-DEAYKLMLKMEEKGCNPNV 756

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T  A+I       ++ + +E+  DM S G  PN ITY +L+  C     ++    LL +
Sbjct: 757 VTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDE 816

Query: 435 AKE 437
            K+
Sbjct: 817 MKQ 819



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 116/520 (22%), Positives = 226/520 (43%), Gaps = 41/520 (7%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G+  +   ++ +M  KG +  D  Y      +C + K +++AF  F+ +      P++ T
Sbjct: 439 GKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASK-VEKAFSLFEEMKRNGIVPSVYT 497

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           + +L+     +   + A +    +   G   +   YT LI    K+ ++    E+F  M+
Sbjct: 498 YTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMML 557

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR--------SKNVK--------PDRV 198
             G +PNV TY ALIDG  KAGQ+ KA   Y  MR         K  K        P+ +
Sbjct: 558 LEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVI 617

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            + AL+    ++  V  A ++L  M A  H  +P+ I   A++      G++  A+EV+ 
Sbjct: 618 TYGALVDGLCKANRVKEAHELLDTMLA--HGCEPNQIVYDAVIDGFCKIGKLQDAQEVFT 675

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318
            + +         Y+  I+C  +    +    V   M +    P+ V  + ++D     G
Sbjct: 676 KMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIG 735

Query: 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
           K + A++++ + + +G +  +++Y++++     +   ++ LEL+  M S    P   T  
Sbjct: 736 KTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYR 795

Query: 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438
            LI   C    L +  ++L +MK      + +++  ++    ++    +G  LL +  E+
Sbjct: 796 VLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEFITSIG--LLDELSEN 853

Query: 439 GVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 496
             +P   +++ +I   + + R E A  L E + S  S    + NK+           + A
Sbjct: 854 ESVPVDSLYRILIDNYIKAGRLEVALDLLEEISS--SPSHAVSNKY-----------LYA 900

Query: 497 GTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALK 536
             I  +   SKV   L+L Y + I + +V  L +    +K
Sbjct: 901 SLIENLSHASKVDKALEL-YASMISKNVVPELSILVHLIK 939



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 111/483 (22%), Positives = 198/483 (40%), Gaps = 70/483 (14%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPT 91
           +R+G++  C  +L  M  +G     +++++     CKS +    A++ FK +      P 
Sbjct: 325 LRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKS-RDYSYAYKLFKKMIKCGCQPG 383

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEA----------------------------- 121
              +N+ + SVC  S + + +  +L LV++A                             
Sbjct: 384 YLVYNIFIGSVC--SNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKF 441

Query: 122 -------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168
                        G   D   Y+ +I     + KV+  F +F EM   GI P+V+TY  L
Sbjct: 442 DQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTIL 501

Query: 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228
           ID   KAG + +A   +  M  K   P+ V + ALI A  ++  +  A D L EM   + 
Sbjct: 502 IDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVA-DELFEMML-LE 559

Query: 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIH---------KY------NIKGTPEV-- 271
              P+ +T  AL+     AGQ+++A ++Y  +          KY      N +G P V  
Sbjct: 560 GCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEG-PNVIT 618

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y   ++   +    + A  + D M   G  P+++   A+ID     GK++ A E+  +  
Sbjct: 619 YGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMS 678

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G S  + +YSS +            L++   M      P V     ++  LC   +  
Sbjct: 679 ERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTD 738

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  +++  M+  G  PN +TY+ ++    +   +E  L L       G  PN + ++ +I
Sbjct: 739 EAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLI 798

Query: 452 GMC 454
             C
Sbjct: 799 NHC 801



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 163/369 (44%), Gaps = 17/369 (4%)

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITT 136
           +E   +  ++   TLS F    S+C   K  E AF    L+ EA     D   Y  +++ 
Sbjct: 235 REMLSYAFVMDRYTLSCF--AYSLCKGGKCRE-AFD---LIDEAEDFVPDTVFYNRMVSG 288

Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
             ++   +   ++ H M ++   PNV TY  L+ GC + GQ+ +      +M ++   P+
Sbjct: 289 LCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPN 348

Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQ-----V 250
           R +FN+LI A  +S     A+ +  +M        P ++     + + C+N  Q     +
Sbjct: 349 REIFNSLIHAYCKSRDYSYAYKLFKKMIK--CGCQPGYLVYNIFIGSVCSNEEQPSSDIL 406

Query: 251 DRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           D   + Y +M+    +     V   A  C    G ++ A  +  +M  KG +PD+   S 
Sbjct: 407 DLVEKAYSEMLDLGVVLNKVNVSNFA-RCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSK 465

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           +I F   A KVE AF + +E K  GI   + +Y+ L+ +   A   Q+A + ++ M    
Sbjct: 466 VIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKG 525

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P V T  ALI A     Q+P   E+   M   G  PN +TY+ L+    +   +E   
Sbjct: 526 CTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKAC 585

Query: 430 MLLSQAKED 438
            + ++ + D
Sbjct: 586 QIYARMRGD 594



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 46/402 (11%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
            N L+  C  +     A + L  +++ G K     Y  LI    ++ K+D  + V  EM+
Sbjct: 179 LNFLVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREML 238

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           +     + +T         K G+  +AF    I  +++  PD V +N +++   ++   +
Sbjct: 239 SYAFVMDRYTLSCFAYSLCKGGKCREAFDL--IDEAEDFVPDTVFYNRMVSGLCEASLFE 296

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
            A D+L  M +      P+ +T   L+  C   GQ+ R + +  M+         E++  
Sbjct: 297 EAMDILHRMRSS--SCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNS 354

Query: 275 AINCCSQTGDWEFA--------------------------CS---------------VYD 293
            I+   ++ D+ +A                          CS                Y 
Sbjct: 355 LIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYS 414

Query: 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353
           +M   GV+ ++V +S        AGK + AF+I+ E   +G      +YS ++G   +A 
Sbjct: 415 EMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDAS 474

Query: 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413
             +KA  L+E MK   + P+V T   LI + C    + +  +   +M   G  PN +TY+
Sbjct: 475 KVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYT 534

Query: 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 454
            L+ A  +   + V   L      +G  PN+V +  +I G C
Sbjct: 535 ALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHC 576



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 159/371 (42%), Gaps = 47/371 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L +  R+ E  +LL+ M   G      VY A     CK  K       F K+     +P 
Sbjct: 626 LCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPN 685

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L T++  +         +   +VL  + E     +  +YT ++    K GK D  +++  
Sbjct: 686 LYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLML 745

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +M   G  PNV TY A+IDG  K+G++ +    +  M SK   P+ + +  LI  C  +G
Sbjct: 746 KMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNG 805

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            +D A+ +L EM     P    HI                       + H+  I+G  + 
Sbjct: 806 LLDEAYKLLDEMKQTYWP---KHI-----------------------LSHRKIIEGFSQE 839

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-- 329
           +  +I              + D++++   +P +     LID    AG++E A ++L+E  
Sbjct: 840 FITSI-------------GLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEIS 886

Query: 330 -AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
            + +  +S   + Y+SL+   S+A    KALELY  M S  + P +S +  LI  L   D
Sbjct: 887 SSPSHAVSNKYL-YASLIENLSHASKVDKALELYASMISKNVVPELSILVHLIKGLIKVD 945

Query: 389 QLPKTMEVLSD 399
           +  + ++ LSD
Sbjct: 946 KWQEALQ-LSD 955



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 127/334 (38%), Gaps = 32/334 (9%)

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
           C + G W  A      +   G  P +   +ALI     A K++ A+ + +E  +    + 
Sbjct: 186 CCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMD 245

Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398
             + S    +       ++A +L +  +     P     N +++ LC+     + M++L 
Sbjct: 246 RYTLSCFAYSLCKGGKCREAFDLIDEAED--FVPDTVFYNRMVSGLCEASLFEEAMDILH 303

Query: 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SR 456
            M+S    PN +TY ILL  C RK  +     +LS    +G  PN  +F  +I   C SR
Sbjct: 304 RMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSR 363

Query: 457 RYEKARTL----------------NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 500
            Y  A  L                N  + S  S   Q  +    L    Y E +  G + 
Sbjct: 364 DYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVL 423

Query: 501 TVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSL 557
               VS    CL      D   +++  +   G   D    S +   +    + + +AFSL
Sbjct: 424 NKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVE-KAFSL 482

Query: 558 LEEAASFGIVPCV--------SFKEIPVVVDARK 583
            EE    GIVP V        SF +  ++  ARK
Sbjct: 483 FEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARK 516



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 104/247 (42%), Gaps = 35/247 (14%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            PN  + T  M+  +C   K  E A++++  ++E G   +   YT +I    KSGK++  
Sbjct: 718 TPNVVIYT-EMVDGLCKIGKTDE-AYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQC 775

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS----KNVKPDRVVFNA 202
            E+F +M + G  PN  TY  LI+ C   G + +A+     M+     K++   R +   
Sbjct: 776 LELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEG 835

Query: 203 L----ITACG-------------------------QSGAVDRAFDVLAEMNAEVHPVDPD 233
                IT+ G                         ++G ++ A D+L E+++       +
Sbjct: 836 FSQEFITSIGLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAVSN 895

Query: 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293
                +L++  ++A +VD+A E+Y  +   N+     +    I    +   W+ A  + D
Sbjct: 896 KYLYASLIENLSHASKVDKALELYASMISKNVVPELSILVHLIKGLIKVDKWQEALQLSD 955

Query: 294 DMTKKGV 300
            + +  +
Sbjct: 956 SICQMDI 962



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 121/301 (40%), Gaps = 65/301 (21%)

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
           L+  C     W  ALE    +K    KP+ +T NALI      D+L     V  +M S  
Sbjct: 182 LVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLSYA 241

Query: 405 --------------LC-------------------PNTITYSILLVACERKDDVEVGLML 431
                         LC                   P+T+ Y+ ++         E  + +
Sbjct: 242 FVMDRYTLSCFAYSLCKGGKCREAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDI 301

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS-------------FNSG-RPQ 477
           L + +    IPN+V ++ ++  C R+ +  R   + +LS             FNS     
Sbjct: 302 LHRMRSSSCIPNVVTYRILLSGCLRKGQLGRC--KRILSMMITEGCYPNREIFNSLIHAY 359

Query: 478 IENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVE------- 526
            +++  S A  ++++ I  G  P   V +  +G +    + P ++DI + LVE       
Sbjct: 360 CKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQP-SSDILD-LVEKAYSEML 417

Query: 527 NLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSF--KEIPVVVDARKL 584
           +LGV  + +  SN    + G G++D +AF ++ E    G VP  S   K I  + DA K+
Sbjct: 418 DLGVVLNKVNVSNFARCLCGAGKFD-QAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKV 476

Query: 585 E 585
           E
Sbjct: 477 E 477


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/451 (20%), Positives = 187/451 (41%), Gaps = 44/451 (9%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNP-TLSTFN 96
           ++E  +LL +ME KG+      Y    + + ++++ +  A+ F +++    NP     FN
Sbjct: 227 LAEAFELLSEMEMKGVKPNAATYGTYLYGLSRTRQ-VASAWNFLQMLCQRGNPCNTYCFN 285

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
            ++         + A +V   +++ GL  D   Y+ L+    K G V   +++  EM   
Sbjct: 286 AVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARN 345

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216
           GI P + +Y +L+ G  +AG+V  AF  +  +  +  K D +V++ ++  C Q   ++  
Sbjct: 346 GIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVV 405

Query: 217 FDVLAEMNAEVH------------------------------------PVDPDHITIGAL 240
            D+  +M   VH                                     V P+ +T   L
Sbjct: 406 CDLWNDM---VHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTIL 462

Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
           +        +D A      + ++ I     +Y + IN   +    +    ++ DM K+G 
Sbjct: 463 VDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGY 522

Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
           +PD V  S +ID    A K+  AF +  +  ++G    + +Y+SL+    +     + + 
Sbjct: 523 VPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVT 582

Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
           L++HM    L P      +LI   C    +   +E+   M  LGL  +   Y+ L+    
Sbjct: 583 LFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFS 642

Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +   ++    L+ +    G+ P++V +  +I
Sbjct: 643 KVLAMDGAQCLMEEMTNKGLTPSVVTYTNLI 673



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 184/425 (43%), Gaps = 31/425 (7%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKNVKPDRVVFNALITA 206
           +F +M ++G  PNV++Y  L+       ++  A+AF     M  K VKP+   +   +  
Sbjct: 196 LFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYLYG 255

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             ++  V  A++ L  +    +P +       A+++     GQV  A EV+  + K  + 
Sbjct: 256 LSRTRQVASAWNFLQMLCQRGNPCNT--YCFNAVIQGFCREGQVQEAIEVFDAMKKGGLV 313

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+I ++   + GD      +  +M + G+ P  V  S+L+     AGKVE AFE+
Sbjct: 314 PDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFEL 373

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
            +  + QG     I YS ++  C    N +   +L+  M      P      +LI A C 
Sbjct: 374 FRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCR 433

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
              L   + V   M   G+ PN +T +IL+    ++  ++   + L + ++ G++PNL M
Sbjct: 434 HRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCM 493

Query: 447 FKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV 505
           ++ II G+C  +  K+    +HV             W   A M+ R   V  T+    ++
Sbjct: 494 YRVIINGLC--KVNKS----DHV-------------WGIFADMIKR-GYVPDTVVYSIII 533

Query: 506 SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAAS 563
              +  L+LP    +  ++++  G   +    +   SLI+G    D  P   +L +    
Sbjct: 534 DSFVKALKLPEAFRLFHKMLDE-GTKPNVFTYT---SLINGLCHDDRLPEVVTLFKHMIW 589

Query: 564 FGIVP 568
            G+ P
Sbjct: 590 EGLTP 594



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 173/425 (40%), Gaps = 40/425 (9%)

Query: 172 CAKAGQVAKAFGAYGI-MRS---KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227
           C +   +++  G + + MRS   + ++  R    +++  CG SG   R    LA M    
Sbjct: 77  CVRLYGLSQTIGLFALLMRSFLPQRIREIRCFIRSIVDYCGSSG---RELFELAPMLVSS 133

Query: 228 HPVDPDHITIGA-LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286
                  + + A +++        + A   Y    K  ++   ++    + C  +     
Sbjct: 134 LGGSMTLLQVYATIIRIFVELSMFEDALLTYTEAKKVGVE--LQLCNFLLKCLVERNQII 191

Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK--VEAAFEILQEAKNQGISVGIISYSS 344
           +A S++DDM   G  P+    S L+    H  +  +  AFE+L E + +G+     +Y +
Sbjct: 192 YARSLFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGT 251

Query: 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404
            +   S  +    A    + +            NA+I   C   Q+ + +EV   MK  G
Sbjct: 252 YLYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGG 311

Query: 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-------- 455
           L P+T +YSIL+    ++ DV  G  LL +   +G+ P LV +  ++ G+C         
Sbjct: 312 LVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAF 371

Query: 456 ---RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
              RR E+    ++H++         ++    +   ++ + +    +P     + ++   
Sbjct: 372 ELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLI--- 428

Query: 513 QLPYNADIRER-LVENLGV---SADALKRSNLCS---LIDGFGEYD--PRAFSLLEEAAS 563
                A  R R L + LGV     D+    N+ +   L+DGFG+      AF  L +   
Sbjct: 429 ----YAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQ 484

Query: 564 FGIVP 568
           FGIVP
Sbjct: 485 FGIVP 489


>gi|302775192|ref|XP_002971013.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
 gi|300160995|gb|EFJ27611.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
          Length = 413

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 157/359 (43%), Gaps = 9/359 (2%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
           AF+VL  + +         Y +LIT   K G       +F  M +  + P ++TY A++ 
Sbjct: 11  AFKVLEWLSDRKRGIHANAYNSLITGLMKDGDEADAIAIFERMKHDRVAPTLYTYTAVMR 70

Query: 171 GCAKAGQVAKAFGAYG-IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE--V 227
             +       A   +  ++   ++KPD  ++N ++ A G+   ++R       M  E  V
Sbjct: 71  ALSHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWERMQKEGCV 130

Query: 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287
             V     T   L+       Q D A + Y  ++   +K T  +Y   +  C+  G W  
Sbjct: 131 ENVG----TYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLV 186

Query: 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347
           A + + +M + G  P  V  + L+   G AGK E   ++L   K  G++    + ++++ 
Sbjct: 187 ALTFFKEMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLN 246

Query: 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407
               A+ + +A+  +  +KS  +K      N ++ A          + ++ +M+  G+ P
Sbjct: 247 GLIAAREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAP 306

Query: 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 464
           N +T+  LLVACE    VEV L L    K+   +PN  +   +I  C +   +++AR +
Sbjct: 307 NEVTFGPLLVACENAKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNI 365



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 170/405 (41%), Gaps = 27/405 (6%)

Query: 16  GKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           G HAN          +YN LI    + G  ++ I + E M+   +      Y A    + 
Sbjct: 24  GIHAN----------AYNSLITGLMKDGDEADAIAIFERMKHDRVAPTLYTYTAVMRALS 73

Query: 72  KSQKAIKEAFRFF-KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
             Q   + A R F +LV +    P ++ +N +++        E   Q    +Q+ G   +
Sbjct: 74  HVQ-GWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWERMQKEGCVEN 132

Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
              Y  L++T  ++ + D   + +  M + G++     Y  L+  CA  G+   A   + 
Sbjct: 133 VGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFK 192

Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
            M     KP  V +N L+ A G++G  +   D+L  M A    V PD  T+ A++     
Sbjct: 193 EMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKAS--GVAPDFYTVNAVLNGLIA 250

Query: 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306
           A + DRA   +  +    +K   EVY + +  C ++ +WE A S+  +M + G+ P+EV 
Sbjct: 251 AREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVT 310

Query: 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366
              L+    +A +VE A  + +  K +         +SL+ AC     WQ+A  +Y    
Sbjct: 311 FGPLLVACENAKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNIYR--- 367

Query: 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
                P V   NALI A C   +     +V   M   G   N +T
Sbjct: 368 --VSSPNVYVYNALIDAYCRSQKYHLAKKVDRRMIEEGCQRNNVT 410



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 91/210 (43%), Gaps = 16/210 (7%)

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
           AG+   AF++L+   ++   +   +Y+SL+       +   A+ ++E MK  ++ PT+ T
Sbjct: 5   AGRRRTAFKVLEWLSDRKRGIHANAYNSLITGLMKDGDEADAIAIFERMKHDRVAPTLYT 64

Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQA 435
             A++ AL           + S++   G L P+   Y+ +L A  R   +E  L    + 
Sbjct: 65  YTAVMRALSHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWERM 124

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL---------- 485
           +++G + N+  +  ++    +  +    L+ +    + G    +  +  L          
Sbjct: 125 QKEGCVENVGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRW 184

Query: 486 --ALMVYREAIVAGTIPTV---EVVSKVLG 510
             AL  ++E + +G  PT+    V+ + LG
Sbjct: 185 LVALTFFKEMLESGCKPTIVTYNVLMRALG 214


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 176/383 (45%), Gaps = 5/383 (1%)

Query: 70  VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           V KS+K IKE   F      P   T+N +++     +D  G  ++L+++++ G+  +   
Sbjct: 221 VEKSKKLIKE---FSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVT 277

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           YT LI    K+GK++ + ++F EM   GIE ++H Y +LI    + G + +AF  +  + 
Sbjct: 278 YTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELT 337

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
            K + P    + ALI    + G +  A  ++ EM ++   V+   +    L+      G 
Sbjct: 338 EKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSK--GVNITQVVFNTLINGYCRKGM 395

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           +D A  +Y ++ K   +          +C ++   ++ A      M + GV    V  + 
Sbjct: 396 IDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTN 455

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           LID     G VE A  +  E  ++ +    I+Y+ ++ A       ++A +L+ +MK+  
Sbjct: 456 LIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANG 515

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
           + P   T  +LI   C  D + + M + S+M   GL  N++TY++++    +    +   
Sbjct: 516 MDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAF 575

Query: 430 MLLSQAKEDGVIPNLVMFKCIIG 452
            L  + K  G   +  ++  +IG
Sbjct: 576 GLYDEIKRKGYTIDNKVYTALIG 598



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 188/425 (44%), Gaps = 7/425 (1%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP----T 91
           +  G   E + + + M +KGL  +D+     F    K ++ I     FF+ + +     T
Sbjct: 146 VDNGMFEEGLRVFDYMVKKGL-SIDERSCIVFLVAAKKRRRIDLCLEFFRRMVDSGVKIT 204

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + +  +++       + E + ++++     G+K +   Y T+I    K      + ++  
Sbjct: 205 VYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILK 264

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M   G+  N  TY  LI+   K G++      +  MR + ++ D  V+ +LI+   + G
Sbjct: 265 VMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKG 324

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            + RAF +  E+  +   + P   T GAL+      G++  A  +   +    +  T  V
Sbjct: 325 NIKRAFLLFDELTEK--GLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVV 382

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   IN   + G  + A  +YD M KKG   D    + +        + + A + L    
Sbjct: 383 FNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMM 442

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
             G+ +  +SY++L+       N ++A  L+  M S +++P   T N +I A C   ++ 
Sbjct: 443 EGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVK 502

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +  ++ ++MK+ G+ P++ TY+ L+      D+V+  + L S+    G+  N V +  +I
Sbjct: 503 EARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMI 562

Query: 452 GMCSR 456
              S+
Sbjct: 563 SGLSK 567



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/357 (20%), Positives = 164/357 (45%), Gaps = 2/357 (0%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154
           F+++  V   +   E   +V   + + GL  D +     +    K  ++D   E F  MV
Sbjct: 138 FDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEFFRRMV 197

Query: 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214
           ++G++  V++   +++G  + G+V K+         K +KP+   +N +I A  +     
Sbjct: 198 DSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFS 257

Query: 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274
               +L  M  +   V  + +T   L++     G+++   +++  + +  I+    VYT 
Sbjct: 258 GVEKILKVMKKD--GVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTS 315

Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
            I+   + G+ + A  ++D++T+KG++P      ALID     G++ AA  ++ E +++G
Sbjct: 316 LISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKG 375

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
           +++  + +++L+          +A  +Y+ M+    +  V T N + +      +  +  
Sbjct: 376 VNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAK 435

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           + L  M   G+  +T++Y+ L+    ++ +VE    L  +     V PN + +  +I
Sbjct: 436 QWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMI 492



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 133/331 (40%), Gaps = 44/331 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +   +H Y  LI    R+G I     L +++  KGLL     Y A    VCK  +     
Sbjct: 306 IESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAE 365

Query: 81  FRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               ++     N T   FN L++        + A  +  ++++ G +AD     T+ +  
Sbjct: 366 ILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNTIASCF 425

Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
            +  + D   +    M+  G+  +  +Y  LID   K G V +A   +  M SK V+P+ 
Sbjct: 426 NRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNA 485

Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
           + +N +I A  + G V  A  + A M A  + +DPD  T  +L+     A  VD A    
Sbjct: 486 ITYNVMIYAYCKQGKVKEARKLWANMKA--NGMDPDSYTYTSLIHGECIADNVDEA---- 539

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
                                            ++ +M  KG+  + V  + +I     A
Sbjct: 540 -------------------------------MRLFSEMGLKGLDQNSVTYTVMISGLSKA 568

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGA 348
           GK + AF +  E K +G ++    Y++L+G+
Sbjct: 569 GKSDEAFGLYDEIKRKGYTIDNKVYTALIGS 599



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 60/279 (21%), Positives = 117/279 (41%), Gaps = 41/279 (14%)

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH------PVDPDHITIGALMKACA 245
           N+KPD     A++T   +  +  R  ++   +N+ V+      PV+     +G+ M  C 
Sbjct: 73  NLKPD---LTAVVTLSHRLYSNRRFSEMRLLLNSVVNDGFYERPVEG----LGSAMVDC- 124

Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE- 304
                D + E ++   K+        + +        G +E    V+D M KKG+  DE 
Sbjct: 125 -----DISEEKFEFWEKF--------FDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDER 171

Query: 305 ---VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
              VFL A    A    +++   E  +   + G+ + + S + ++         +K+ +L
Sbjct: 172 SCIVFLVA----AKKRRRIDLCLEFFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKL 227

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VA 418
            +      +KP   T N +I A           ++L  MK  G+  N +TY++L+   V 
Sbjct: 228 IKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVK 287

Query: 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
             + +DVE    L  + +E G+  ++ ++  +I    R+
Sbjct: 288 NGKMNDVE---KLFDEMRERGIESDIHVYTSLISWNCRK 323


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 168/361 (46%), Gaps = 43/361 (11%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           PT  T+N L+S +C + + SE A+ +L  +  +G   D   YTTLIT   KS K D    
Sbjct: 52  PTAVTYNSLISGLCKAERASE-AYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 110

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM-RSKNVKPDRVVFNALITAC 207
           VF ++V  G  P+V TY  LIDG  K G++ +A   +G M +S +  P+ V +N+LI+  
Sbjct: 111 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G +D A ++L  M AE     PD +T   LM       ++D A   Y ++++     
Sbjct: 171 CRMGKMDEAMNLLERM-AETGS-SPDVVTYTTLMNGFCKLARLDDA---YDLLNQ----- 220

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
                                      MT+KG+ P+ V  ++L+D      ++  A  IL
Sbjct: 221 ---------------------------MTRKGLTPNVVTFTSLMDGLCRENRLSDAVHIL 253

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
            E + +  S  + +Y++++         ++A +    ++ +   P V + N +I  LC  
Sbjct: 254 GEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKF--MLEEMDCPPNVVSFNIMIRGLCKV 311

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVM 446
           ++  + ME++ + +     P+ + Y+ ++ V C  K   E   +     +E G +PN + 
Sbjct: 312 NRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSIT 371

Query: 447 F 447
           +
Sbjct: 372 Y 372



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/339 (19%), Positives = 147/339 (43%), Gaps = 38/339 (11%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177
           VQ+A        Y +LI+   K+ +    +++  EMV +G  P++ TY  LI G  K+ +
Sbjct: 45  VQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKK 104

Query: 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237
              A   +  + ++  +PD V ++ LI    + G +  A D+   M  +     P+ +T 
Sbjct: 105 SDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRM-IKSGSCMPNTVTY 163

Query: 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297
            +L+      G++D A                                    ++ + M +
Sbjct: 164 NSLISGFCRMGKMDEAM-----------------------------------NLLERMAE 188

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
            G  PD V  + L++      +++ A+++L +   +G++  +++++SLM           
Sbjct: 189 TGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSD 248

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A+ +   M+     PTV T N ++   C  +QL +  + +  ++ +   PN ++++I++ 
Sbjct: 249 AVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFM--LEEMDCPPNVVSFNIMIR 306

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
              + +     + L+ +A+     P++VM+  +I +  R
Sbjct: 307 GLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCR 345



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 137/325 (42%), Gaps = 15/325 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-K 85
           +YN LI    +  R SE  DLLE+M   G +     Y       CKS+K+  +A R F +
Sbjct: 56  TYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKS-DDALRVFEQ 114

Query: 86  LVP---NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           LV     P + T++ L+  +C   +  E      R+++      +   Y +LI+   + G
Sbjct: 115 LVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 174

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
           K+D    +   M   G  P+V TY  L++G  K  ++  A+     M  K + P+ V F 
Sbjct: 175 KMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFT 234

Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
           +L+    +   +  A  +L EM  +     P   T   ++       Q++ AR+   M+ 
Sbjct: 235 SLMDGLCRENRLSDAVHILGEMRRK--SCSPTVYTYNTILDGYCRVNQLEEARKF--MLE 290

Query: 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 321
           + +       + I I    +      A  + ++  ++   PD V  + +ID      KV+
Sbjct: 291 EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVD 350

Query: 322 AAFEILQEA-KNQGISVGIISYSSL 345
            A  + ++  +  G     I+YS+ 
Sbjct: 351 EACRVYRKMLEEPGCLPNSITYSTF 375


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 190/459 (41%), Gaps = 26/459 (5%)

Query: 15  NGKHANYAH----DVSEQLH--------SYNRLIR----QGRISECIDLLEDMERKGLLD 58
            G H   A     D+S + H        SY  ++R      R  E + LL  M+  G+  
Sbjct: 97  GGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRA 156

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQV 114
               Y      +C + + +  A      +      P +  ++ L+     S   +   +V
Sbjct: 157 DVVTYGTLIRGLCDASE-LDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKV 215

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
              +   G+K D  ++T LI    K GK     +V   MV  G+EPNV TY  LI+   K
Sbjct: 216 FEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCK 275

Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
            G V +A      M  K V PD V +N LI        +D A   L EM      V+PD 
Sbjct: 276 EGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDV 335

Query: 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294
           +T  +++      G++ +A +V +M+ +         Y   I    +    + A ++ D+
Sbjct: 336 VTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDE 395

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           +   G+ PD    S LI+      +V+ A + L   + +GI   +  Y  L+ A      
Sbjct: 396 LAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGM 455

Query: 355 WQKALELYEHM-KSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
            ++A+ L+  M K+  L     STM   I   C    +    +++ DM   GL P+ +TY
Sbjct: 456 MERAMGLFNEMDKNCGLDAIAYSTM---IHGACKSGDMKTVKQLIQDMLDEGLAPDAVTY 512

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           S+L+    +  D+E    +L Q    G +P++ +F  +I
Sbjct: 513 SMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLI 551



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 141/306 (46%), Gaps = 4/306 (1%)

Query: 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218
            PN  +Y  ++ G   + +  +A      M++  V+ D V +  LI     +  +D A +
Sbjct: 120 RPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALE 179

Query: 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
           +L EM      V P+ +    L++    +G+     +V++ + +  IK    ++T  I+ 
Sbjct: 180 LLDEMCGS--GVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDD 237

Query: 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338
             + G    A  V D M ++G+ P+ V  + LI+     G V  A  + +E  ++G++  
Sbjct: 238 LCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPD 297

Query: 339 IISYSSLMGACSNAKNWQKALELYEHM--KSIKLKPTVSTMNALITALCDGDQLPKTMEV 396
           +++Y++L+   S      +A+   E M      ++P V T N++I  LC   ++ + ++V
Sbjct: 298 VVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKV 357

Query: 397 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
              M   G   N +TY+ L+    R   V++ + L+ +    G+ P+   +  +I   S+
Sbjct: 358 REMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSK 417

Query: 457 RYEKAR 462
            +E  R
Sbjct: 418 MWEVDR 423



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 139/318 (43%), Gaps = 14/318 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------L 86
           N L ++G + E + L ++M+ KG+   D V +            + EA  F +       
Sbjct: 271 NSLCKEGSVREALTLRKEMDDKGVAP-DVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDT 329

Query: 87  VPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           V  P + TFN ++  +C   + ++ A +V  ++ E G   +   Y  LI    +  KV  
Sbjct: 330 VVEPDVVTFNSVIHGLCKIGRMTQ-AVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKM 388

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
              +  E+  +G+EP+  TY  LI+G +K  +V +A      MR + +K +   +  L+ 
Sbjct: 389 AMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLA 448

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           A  Q G ++RA  +  EM+        D I    ++     +G +   +++ + +    +
Sbjct: 449 AMCQQGMMERAMGLFNEMDKNC---GLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGL 505

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 Y++ IN  ++ GD E A  V   MT  G +PD     +LI      G+ +   +
Sbjct: 506 APDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLK 565

Query: 326 ILQE--AKNQGISVGIIS 341
           ++ E  AKN      IIS
Sbjct: 566 LIHEMRAKNVAFDPKIIS 583



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 153/379 (40%), Gaps = 43/379 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           R GR  +   + EDM R+G+     ++     ++CK  K  K A     +V     P + 
Sbjct: 205 RSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVV 264

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           T+N+L++          A  + + + + G+  D   Y TLI   +   ++D       EM
Sbjct: 265 TYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEM 324

Query: 154 VNAG--IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +     +EP+V T+ ++I G  K G++ +A     +M  +    + V +N LI    +  
Sbjct: 325 IQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVH 384

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK----- 266
            V  A +++ E+   +  ++PD  T   L+   +   +VDRA +    + +  IK     
Sbjct: 385 KVKMAMNLMDEL--AISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFH 442

Query: 267 -----------GTPE------------------VYTIAINCCSQTGDWEFACSVYDDMTK 297
                      G  E                   Y+  I+   ++GD +    +  DM  
Sbjct: 443 YIPLLAAMCQQGMMERAMGLFNEMDKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLD 502

Query: 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357
           +G+ PD V  S LI+     G +E A  +L++    G    +  + SL+   S      K
Sbjct: 503 EGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDK 562

Query: 358 ALELYEHM--KSIKLKPTV 374
            L+L   M  K++   P +
Sbjct: 563 VLKLIHEMRAKNVAFDPKI 581



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 114/255 (44%), Gaps = 14/255 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFFKLVPNPT 91
           L + GR+++ + + E M  +G +     Y+     F  V K + A+            P 
Sbjct: 345 LCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPD 404

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
             T+++L++  +   + + A + L  +++ G+KA+   Y  L+    + G ++    +F+
Sbjct: 405 SFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFN 464

Query: 152 EM-VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           EM  N G+  +   Y  +I G  K+G +         M  + + PD V ++ LI    + 
Sbjct: 465 EMDKNCGL--DAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKL 522

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY---NIKG 267
           G ++ A  VL +M A      PD     +L+K  +  GQ D+   V K+IH+    N+  
Sbjct: 523 GDLEEAERVLKQMTASGFV--PDVAVFDSLIKGYSAEGQTDK---VLKLIHEMRAKNVAF 577

Query: 268 TPEVYTIAINCCSQT 282
            P++ +  I    QT
Sbjct: 578 DPKIISTIIRLPQQT 592


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 168/366 (45%), Gaps = 3/366 (0%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L TFN++++          A  VL  + + G + D     +L+    +  +V     +  
Sbjct: 120 LYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
           +MV  G  P++  Y A+ID   K  +V  A   +  +  K ++P+ V + AL+     SG
Sbjct: 180 KMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSG 239

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
             + A  +L +M      + P+ IT  AL+ A    G+V  A+E+++ + + +I      
Sbjct: 240 RWNDAARLLRDMIK--RKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVT 297

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y+  IN        + A  ++D M  KG  PD V  + LI+    A +VE   ++ ++  
Sbjct: 298 YSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMS 357

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
            +G+    ++Y++L+       +  KA E +  M S  + P + T N L+  LCD   L 
Sbjct: 358 QRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLE 417

Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           K + +  DM+   +  + +TY+ ++    +   VE    L       G+ P++V +  ++
Sbjct: 418 KALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMM 477

Query: 452 -GMCSR 456
            G+C++
Sbjct: 478 SGLCTK 483



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 147/323 (45%), Gaps = 2/323 (0%)

Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
           +  L++   K  K D +  +  +M   GI  +++T+  +I+      QV+ A    G M 
Sbjct: 88  FNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKML 147

Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
               +PDRV   +L+    +   V  A  ++ +M  E+    PD +   A++ +     +
Sbjct: 148 KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEIG-YRPDIVAYNAIIDSLCKTRR 205

Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
           V+ A + +K I +  I+     YT  +N    +G W  A  +  DM K+ + P+ +  SA
Sbjct: 206 VNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSA 265

Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
           L+D     GKV  A EI +E     I   I++YSSL+          +A ++++ M S  
Sbjct: 266 LLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325

Query: 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
             P V + N LI   C   ++   M++   M   GL  NT+TY+ L+    +  DV+   
Sbjct: 326 CFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQ 385

Query: 430 MLLSQAKEDGVIPNLVMFKCIIG 452
              SQ    GV P++  +  ++G
Sbjct: 386 EFFSQMDSFGVSPDIWTYNILLG 408



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 187/395 (47%), Gaps = 18/395 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N   R+ R+S+ + L++ M   G       Y+A   ++CK+++ + +A  FFK +     
Sbjct: 163 NGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRR-VNDALDFFKEIGRKGI 221

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+  L++   +S     A ++LR + +  +  +   Y+ L+    K+GKV    E
Sbjct: 222 RPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKE 281

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +F EMV   I+P++ TY +LI+G     ++ +A   + +M SK   PD V +N LI    
Sbjct: 282 IFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFC 341

Query: 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268
           ++  V+    +  +M+     +  + +T   L++     G VD+A+E +  +  + +   
Sbjct: 342 KAKRVEDGMKLFRKMSQ--RGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPD 399

Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
              Y I +      G  E A  +++DM K  +  D V  + +I      GKVE A+ +  
Sbjct: 400 IWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFC 459

Query: 329 EAKNQGISVGIISYSSLM-GACSNAKNWQKALE-LYEHMKSIKLKPTVSTMNALITALCD 386
               +G+   I++Y+++M G C+  K  Q  +E LY  MK   L    S +      L D
Sbjct: 460 SLSLKGLKPDIVTYTTMMSGLCT--KGLQHEVEALYTKMKQEGLMKNDSML-----CLGD 512

Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           GD +  + E++  M S G  P+ +   I  V C++
Sbjct: 513 GD-ITISAELIKKMLSCGYAPSLLG-DIKPVGCKK 545



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 176/387 (45%), Gaps = 9/387 (2%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           K   AI       K  P P++  FN L+S     K  +    + + ++  G++ D   + 
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
            +I       +V     V  +M+  G EP+  T G+L++G  +  +V+ A      M   
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEI 184

Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV- 250
             +PD V +NA+I +  ++  V+ A D   E+  +   + P+ +T  AL+    N+G+  
Sbjct: 185 GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRK--GIRPNVVTYTALVNGLCNSGRWN 242

Query: 251 DRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 308
           D AR +  MI +   K TP V  Y+  ++   + G    A  ++++M +  + PD V  S
Sbjct: 243 DAARLLRDMIKR---KITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYS 299

Query: 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368
           +LI+      +++ A ++     ++G    ++SY++L+     AK  +  ++L+  M   
Sbjct: 300 SLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQR 359

Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
            L     T N LI        + K  E  S M S G+ P+  TY+ILL        +E  
Sbjct: 360 GLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKA 419

Query: 429 LMLLSQAKEDGVIPNLVMFKCII-GMC 454
           L++    ++  +  ++V +  +I GMC
Sbjct: 420 LVIFEDMQKSEMDLDIVTYTTVIQGMC 446


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 98/427 (22%), Positives = 188/427 (44%), Gaps = 15/427 (3%)

Query: 35  LIRQGRISECIDLLEDMER--KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           L R+G+     DLL++M     G   +D   +    +    +   + A   F  +     
Sbjct: 159 LAREGQHDAVCDLLDEMLPLPPGSPGLDVRAYTTVLHALSHEGRYERALELFAELKREGV 218

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKSGKVDA 145
            PT   +N+++ V      S    Q++ +++E   AG++ D    +T+I  C + G VD 
Sbjct: 219 APTHVMYNVMLDVYGRMGRSWP--QIVAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDE 276

Query: 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205
               F ++ + G  P V TY AL+    KAG   +A      M     KPD V +N L  
Sbjct: 277 AVAFFEDLKSRGHVPCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAG 336

Query: 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 265
           +  ++G  + A   L  M ++   + P+  T   +M A  NAG+VD A  ++  + K   
Sbjct: 337 SYARAGFYEEAAKCLDTMVSK--GILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGF 394

Query: 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325
                 Y + +    +   +     +  +M++ G  P+ V  + ++   G  G       
Sbjct: 395 IPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTR 454

Query: 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           +L+  K+ G+ +   ++++L+ A     +   A ++Y+ M +    P ++T NAL++ L 
Sbjct: 455 VLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLS 514

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPNL 444
                     +++ MK+ G  PN ++YS+LL  C  K     G+  + +   +G V P+ 
Sbjct: 515 RQGDWTAAQSIINKMKNEGFKPNDMSYSLLL-QCHAKGGNAAGIEAIEKEVYEGTVFPSW 573

Query: 445 VMFKCII 451
           V+ + ++
Sbjct: 574 VILRTLV 580



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 107/513 (20%), Positives = 216/513 (42%), Gaps = 80/513 (15%)

Query: 37  RQGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           R GR   + + +LE+M   G+ + D    +     C     + EA  FF+ + +    P 
Sbjct: 234 RMGRSWPQIVAMLEEMRAAGV-EPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPC 292

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           + T+N L+ V   + +   A +VL+ ++E+G K D   Y  L  + A++G  +   +   
Sbjct: 293 VVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLD 352

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            MV+ GI PN  TY  ++     AG+V +A   +  M+     P    +N ++   G+  
Sbjct: 353 TMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKS 412

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ---VDRARE------------- 255
             +   ++L EM+       P+ +T   ++  C   G    V R  E             
Sbjct: 413 RFNVMLEMLGEMSRS--GCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDT 470

Query: 256 ----------------VYKMIHKYNIKG-TP--EVYTIAINCCSQTGDWEFACSVYDDMT 296
                            +KM  +    G TP    Y   ++  S+ GDW  A S+ + M 
Sbjct: 471 FNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMK 530

Query: 297 KKGVIPDEVFLSALIDF---AGHAGKVEA------------AFEIL-------------- 327
            +G  P+++  S L+      G+A  +EA            ++ IL              
Sbjct: 531 NEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVILRTLVISNFKCRRLE 590

Query: 328 ------QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381
                 QE   +G    ++ ++S++   +    ++KA E+++ +K   L P + T N+++
Sbjct: 591 GIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMM 650

Query: 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441
                 ++  +  ++L  +K+  L P+ ++Y+ ++    ++  ++    +LS+   DGV 
Sbjct: 651 DMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVR 710

Query: 442 PNLVMFKCIIGMCSRR--YEKARTLNEHVLSFN 472
           P +V +  ++G  + R  + +AR +  +++  N
Sbjct: 711 PCVVTYHTLVGGYASREMFSEAREVVSYMIQRN 743



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 150/332 (45%), Gaps = 12/332 (3%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV--- 154
           L+     S   E A  ++R V+  G  AD      ++ T A+ G+ DA+ ++  EM+   
Sbjct: 120 LLKALELSGHWEWALALVRWVRAEGGAADAAALEMVVRTLAREGQHDAVCDLLDEMLPLP 179

Query: 155 --NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
             + G+  +V  Y  ++   +  G+  +A   +  ++ + V P  V++N ++   G+ G 
Sbjct: 180 PGSPGL--DVRAYTTVLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMG- 236

Query: 213 VDRAFDVLAEMNAEVHP--VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
             R++  +  M  E+    V+PD  T   ++ AC   G VD A   ++ +          
Sbjct: 237 --RSWPQIVAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVV 294

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            Y   +    + G++  A  V  +M + G  PD V  + L      AG  E A + L   
Sbjct: 295 TYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTM 354

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
            ++GI     +Y+++M A  NA    +AL L++ MK     P V+T N ++  L    + 
Sbjct: 355 VSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRF 414

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
              +E+L +M   G  PN +T++ +L  C ++
Sbjct: 415 NVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKR 446



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/381 (19%), Positives = 166/381 (43%), Gaps = 13/381 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTF 95
           G++ E + L + M++ G +     Y+     + K  +    ++      +    P   T+
Sbjct: 377 GKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTW 436

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
           N +++VC          +VL  ++  G++     + TLI+   + G     F+++ EM  
Sbjct: 437 NTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTA 496

Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           AG  P + TY AL+   ++ G    A      M+++  KP+ + + +L+  C   G    
Sbjct: 497 AGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDMSY-SLLLQCHAKGGNAA 555

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKA---CANAGQVDRA-REVYKMIHKYNIKGTPEV 271
             + + E       V P  + +  L+ +   C     ++RA +EV    HK ++     +
Sbjct: 556 GIEAI-EKEVYEGTVFPSWVILRTLVISNFKCRRLEGIERAFQEVMARGHKPDLV----I 610

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           +   ++  ++ G +  A  ++D + + G+ PD +  ++++D    + +   A +IL+  K
Sbjct: 611 FNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLK 670

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
              +   ++SY+++M         ++A  +   M +  ++P V T + L+      +   
Sbjct: 671 TSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFS 730

Query: 392 KTMEVLSDMKSLGLCPNTITY 412
           +  EV+S M    L P  +TY
Sbjct: 731 EAREVVSYMIQRNLSPMELTY 751



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 76/374 (20%), Positives = 158/374 (42%), Gaps = 19/374 (5%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +++YN ++    ++ R +  +++L +M R G    ++V       VC  +       R  
Sbjct: 398 VNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTP-NRVTWNTMLAVCGKRGMEGYVTRVL 456

Query: 85  KLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + + +  +     TFN L+S          AF++   +  AG       Y  L++  ++ 
Sbjct: 457 ERMKSCGVELCRDTFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQ 516

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           G   A   + ++M N G +PN  +Y  L+   AK G  A        +    V P  V+ 
Sbjct: 517 GDWTAAQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWVIL 576

Query: 201 NALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
             L+ +   C +   ++RAF    E+ A  H   PD +   +++   A  G   +A E++
Sbjct: 577 RTLVISNFKCRRLEGIERAFQ---EVMARGH--KPDLVIFNSMLSMYAKNGMYRKAGEMF 631

Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
             I +  +      Y   ++  +++ + WE A  +   +    + PD V  + +++    
Sbjct: 632 DSIKQGGLSPDLITYNSMMDMYAKSNESWE-AEKILKRLKTSQLKPDVVSYNTVMNGFCK 690

Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376
            G ++ A  IL E    G+   +++Y +L+G  ++ + + +A E+  +M    L P   T
Sbjct: 691 QGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSPMELT 750

Query: 377 MNALITALCDGDQL 390
              ++ + C   + 
Sbjct: 751 YRRVVDSYCKAKRF 764



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 65/135 (48%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P L T+N +M + A S +S  A ++L+ ++ + LK D   Y T++    K G +     
Sbjct: 640 SPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQR 699

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           +  EM+  G+ P V TY  L+ G A     ++A      M  +N+ P  + +  ++ +  
Sbjct: 700 ILSEMIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYMIQRNLSPMELTYRRVVDSYC 759

Query: 209 QSGAVDRAFDVLAEM 223
           ++   D A   L E+
Sbjct: 760 KAKRFDEARGFLYEI 774


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 183/419 (43%), Gaps = 6/419 (1%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R  RI E   L++ M  +G    D  Y      +C+  K + EA      VP P    
Sbjct: 288 LCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGK-VDEAQVLLNKVPTPNDVH 346

Query: 95  FNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
           F +L++  V +   D   AF   ++++  G + D   + TLI    K G + +  ++ ++
Sbjct: 347 FTILINGYVKSGRLDEANAFLYDKMIKN-GCRPDVFTFNTLIHGLCKKGLMGSAVDMVND 405

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   G  PN+ TY  L+DG  K  Q+ +A      M +K  + + + +N L+ A  ++G 
Sbjct: 406 MSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGK 465

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           V +A D+L EM+ +     PD  T   L+       + + A  +Y+ +    +      Y
Sbjct: 466 VPKALDMLGEMSDK--GCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTY 523

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
              I+   + G  + A  + +DM  +G   DE+  + LI      G  E A  +  E   
Sbjct: 524 NTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVR 583

Query: 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392
           + +    IS + L+           ALEL   M    L P V T N+LI  LC    + +
Sbjct: 584 KDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIRE 643

Query: 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
              + + +++ G+ P+ ITY+ L+    R    +   +LL +  E+  IPN V +  ++
Sbjct: 644 AFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILV 702



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 160/348 (45%), Gaps = 13/348 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           PT+ TF ++M       + + A  +LR + + G   +  +Y TLI   +K  +V+   ++
Sbjct: 206 PTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKL 265

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
             EM   G  P+V T+  +I G  +  ++ +       M  +   P+ + +  L+    +
Sbjct: 266 LEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCR 325

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE-VYKMIHKYNIKGT 268
            G VD A  +L ++        P+ +    L+     +G++D A   +Y  + K   +  
Sbjct: 326 VGKVDEAQVLLNKVPT------PNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCR-- 377

Query: 269 PEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
           P+V+T    I+   + G    A  + +DM+  G  P+ +  + L+D      ++E A  +
Sbjct: 378 PDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYV 437

Query: 327 LQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
           L E   +G  + I+ Y+ L+ A C N K   KAL++   M     KP + T N LI  LC
Sbjct: 438 LNEMSAKGFELNIMGYNVLLRALCKNGK-VPKALDMLGEMSDKGCKPDIFTFNTLIFGLC 496

Query: 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433
             D+    + +  DM   G+  NT+TY+ L+ A  R   ++  L L++
Sbjct: 497 KVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVN 544



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 143/337 (42%), Gaps = 38/337 (11%)

Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
           VF+EM++ G+ P V+T+G ++       +V  A      M      P+ VV+  LI A  
Sbjct: 195 VFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALS 254

Query: 209 QSGAVDRAFDVLAEMNA---------------------EVHP----VD--------PDHI 235
           +   V+ A  +L EM                        +H     VD        P+ I
Sbjct: 255 KRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDI 314

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS-VYDD 294
           T G LM      G+VD A+ +   +   N       +TI IN   ++G  + A + +YD 
Sbjct: 315 TYGVLMNGLCRVGKVDEAQVLLNKVPTPN----DVHFTILINGYVKSGRLDEANAFLYDK 370

Query: 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354
           M K G  PD    + LI      G + +A +++ +    G +  +I+Y++L+        
Sbjct: 371 MIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQ 430

Query: 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414
            ++A  +   M +   +  +   N L+ ALC   ++PK +++L +M   G  P+  T++ 
Sbjct: 431 LEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNT 490

Query: 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           L+    + D  E  L L      DGVI N V +  +I
Sbjct: 491 LIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLI 527



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 6/228 (2%)

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
            R +  M   Y  + T + Y + ++          A +V+ +M  KGVIP       ++ 
Sbjct: 157 TRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMK 216

Query: 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
                 +V+ A  +L++    G     + Y +L+ A S      +AL+L E M  +   P
Sbjct: 217 ALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLP 276

Query: 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432
            V T N +I  LC  +++ +  +++  M   G  PN ITY +L+    R   V+   +LL
Sbjct: 277 DVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLL 336

Query: 433 SQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSFNSGRPQI 478
           ++       PN V F  +I   + S R ++A       +  N  RP +
Sbjct: 337 NKVPT----PNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDV 380


>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 658

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 157/337 (46%), Gaps = 5/337 (1%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
           L T N L+S        E   ++++  ++AGLK     Y  LI   +++G++D     FH
Sbjct: 254 LRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFH 313

Query: 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211
            M    +  N   Y  L+     A Q          M + N+KP++ +FN LI   G+ G
Sbjct: 314 NMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFG 373

Query: 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
            + +A    A+M+ E     PD +T  +L++A   AG +  A ++ K + +     +   
Sbjct: 374 RLPQAMRTFAQMDKE--GFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHT 431

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331
           Y I +N       W+    + D+M  KG+ P+ V  + L+D  G + +   A E L++ K
Sbjct: 432 YNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMK 491

Query: 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
           +QG+      Y +L  + +     ++A+E+++ M+   ++  +S +N LI A     +  
Sbjct: 492 SQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYV 551

Query: 392 KTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDV 425
           +   V   +  +G+ P+ +TY+ L   L+  E+ D V
Sbjct: 552 EAFSVFDYILEVGMSPDVVTYTTLMKALIKAEQLDQV 588



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 108/479 (22%), Positives = 199/479 (41%), Gaps = 49/479 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L ++ R+ E + L + +++ G+      Y+A     C  +  ++ A      +      P
Sbjct: 88  LSKESRVEEAMLLFDQLKQLGVSPGPMAYNA-IVGTCAREDRLETALELMNQMRGSGFQP 146

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRL---VQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
               + ++   CA  K   G   + R+   +++ GL+ D KLY  +I    ++G  D  F
Sbjct: 147 DNVNYTLVFQACA--KKRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRAGDPDKAF 204

Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL---- 203
           +    M    + P+V +Y +LI+      ++  A  AY  M+SK+ K +    NAL    
Sbjct: 205 QYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLRTLNALLSAY 264

Query: 204 -------------------------------ITACGQSGAVDRAFDVLAEMNAEVHPVDP 232
                                          I A  ++G +D+A      M  E  P + 
Sbjct: 265 TRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANA 324

Query: 233 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292
                  LM A  NA Q D    + K ++  NIK    ++ I I+   + G    A   +
Sbjct: 325 --FIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRLPQAMRTF 382

Query: 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352
             M K+G  PD V  ++LI+    AG +  A ++L++ + +     + +Y+ ++ A    
Sbjct: 383 AQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWH 442

Query: 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412
             W++   L + M+   L P V T   L+ +     +  +  E L  MKS GL P+T  Y
Sbjct: 443 NRWKEMALLLDEMRFKGLDPNVVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVY 502

Query: 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM--CSRRYEKARTLNEHVL 469
             L  +  ++   E  + +    ++DGV  NL M   +I     + +Y +A ++ +++L
Sbjct: 503 CALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYIL 561



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 161/379 (42%), Gaps = 18/379 (4%)

Query: 99  MSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           +++   SK+S  E A  +   +++ G+      Y  ++ TCA+  +++   E+ ++M  +
Sbjct: 83  IAITGLSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALELMNQMRGS 142

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR------SKNVKPDRVVFNALITACGQS 210
           G +P+   Y  +   CAK     K  G   I R       + ++ D  ++N +I A  ++
Sbjct: 143 GFQPDNVNYTLVFQACAK-----KRVGVDVISRVCANIEQEGLEMDTKLYNDVINAYCRA 197

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G  D+AF  +  M A    + PD  +  +L++      ++D A   Y  +   + K    
Sbjct: 198 GDPDKAFQYMGLMQA--CDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSYKINLR 255

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
                ++  ++    E    +  D    G+         LID    AG+++ A       
Sbjct: 256 TLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAGRLDQAKAAFHNM 315

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390
           K + +      YS LM A  NA+ W   + L + M +  +KP     N LI       +L
Sbjct: 316 KVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTYGKFGRL 375

Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
           P+ M   + M   G  P+ +T++ L+ A  R   +   L LL Q +E   +P+L  +  I
Sbjct: 376 PQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNII 435

Query: 451 ---IGMCSRRYEKARTLNE 466
              +G  +R  E A  L+E
Sbjct: 436 LNALGWHNRWKEMALLLDE 454



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 11/202 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA-----RFFNVCKSQKAIKEAF 81
           ++N LI    R G I+E +DLL+ M+ +  +     Y+       + N  K    + +  
Sbjct: 396 TWNSLIEAHCRAGLITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEM 455

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           RF  L PN  + T+  L+    +SK    A + L+ ++  GL+    +Y  L  + AK G
Sbjct: 456 RFKGLDPN--VVTYTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRG 513

Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
             +   EVF  M   G+E N+     LI+    AG+  +AF  +  +    + PD V + 
Sbjct: 514 LCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVAGKYVEAFSVFDYILEVGMSPDVVTYT 573

Query: 202 ALITACGQSGAVDRAFDVLAEM 223
            L+ A  ++  +D+  DV  +M
Sbjct: 574 TLMKALIKAEQLDQVPDVYEQM 595



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/293 (22%), Positives = 118/293 (40%), Gaps = 46/293 (15%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           YA ++      +N LI    + GR+ + +     M+++G       +++     C++   
Sbjct: 351 YASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRA-GL 409

Query: 77  IKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           I EA    K +      P+L T+N++++        +    +L  ++  GL  +   YTT
Sbjct: 410 ITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTT 469

Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
           L+ +   S +     E   +M + G++P+   Y AL +  AK G   +A   +  M    
Sbjct: 470 LVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDG 529

Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252
           V+ +  + N LI A G +G    AF V  +   EV  + PD +T   LMKA   A Q+D+
Sbjct: 530 VELNLSMLNLLINAFGVAGKYVEAFSVF-DYILEVG-MSPDVVTYTTLMKALIKAEQLDQ 587

Query: 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
             +VY                                   + M + G  PD++
Sbjct: 588 VPDVY-----------------------------------EQMVRAGCTPDDM 605



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 9/186 (4%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           LH+YN ++       R  E   LL++M  KGL D + V +    +   + K  +EA  + 
Sbjct: 429 LHTYNIILNALGWHNRWKEMALLLDEMRFKGL-DPNVVTYTTLVDSYGTSKRYREASEYL 487

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           K + +    P+ S +  L +  A     E A +V + +++ G++ +  +   LI     +
Sbjct: 488 KQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDGVELNLSMLNLLINAFGVA 547

Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
           GK    F VF  ++  G+ P+V TY  L+    KA Q+ +    Y  M      PD +  
Sbjct: 548 GKYVEAFSVFDYILEVGMSPDVVTYTTLMKALIKAEQLDQVPDVYEQMVRAGCTPDDMAK 607

Query: 201 NALITA 206
           + L +A
Sbjct: 608 DMLRSA 613



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 373 TVSTMNAL-ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431
           T+  ++A+ IT L    ++ + M +   +K LG+ P  + Y+ ++  C R+D +E  L L
Sbjct: 76  TIDLLSAIAITGLSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALEL 135

Query: 432 LSQAKEDGVIPNLVMFKCIIGMCSRR 457
           ++Q +  G  P+ V +  +   C+++
Sbjct: 136 MNQMRGSGFQPDNVNYTLVFQACAKK 161



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/99 (22%), Positives = 54/99 (54%), Gaps = 4/99 (4%)

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
           ++ ++S  ++ G  S     ++A+ L++ +K + + P     NA++      D+L   +E
Sbjct: 76  TIDLLSAIAITG-LSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAREDRLETALE 134

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
           +++ M+  G  P+ + Y+++  AC +K    VG+ ++S+
Sbjct: 135 LMNQMRGSGFQPDNVNYTLVFQACAKK---RVGVDVISR 170


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 198/433 (45%), Gaps = 9/433 (2%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 337 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 395

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
              TFN+L+   A+    + A  +   +++ G+K D   Y T+I    + GK+D   E F
Sbjct: 396 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 455

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
           ++M++ G+ P+ + Y  LI G    G + KA      + +  +  D V F+++I    + 
Sbjct: 456 NQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 515

Query: 211 GAVDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
           G V  A ++    +N  +HP   D +    LM      G++++A  V+  +    I+   
Sbjct: 516 GRVMDAQNIFDLTVNVGLHP---DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 572

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329
             Y   +N   + G  +   S++ +M ++G+ P  +  S +ID    AG+   A     E
Sbjct: 573 VGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHE 632

Query: 330 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389
               GI++ I +Y+ ++      + + +A+ L++ ++++ +K  + T+N +I  +    +
Sbjct: 633 MTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRR 692

Query: 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449
           + +  ++ + +    L P+ +TYSI++    ++  VE    + S  +  G  PN  +   
Sbjct: 693 VEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNH 752

Query: 450 IIGMCSRRYEKAR 462
           ++    ++ E  R
Sbjct: 753 VVRELLKKNEIVR 765



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 104/442 (23%), Positives = 194/442 (43%), Gaps = 25/442 (5%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +L+ D       +  A     C+S  A+  A  F +
Sbjct: 41  VREGTLRPEEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVAL-FNR 99

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ +  +   L+   
Sbjct: 100 AASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGF 159

Query: 138 AKSGKVDAMFEV-FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--K 194
            ++ + D   ++  H     G  P+V +Y  L+      G+  +A     +M        
Sbjct: 160 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS 219

Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254
           P+ V +N +I    + G V++A D+  EM     P  PD +T  +++ A   A  +D+A 
Sbjct: 220 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP--PDLVTYNSVVHALCKARAMDKAE 277

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
              + +    +      Y   I   S TG W+ A  V+ +M +  ++PD V LS L+   
Sbjct: 278 AFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSL 337

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              GK++ A ++      +G +  + SY+ ++   +         +L++ M    + P  
Sbjct: 338 CKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDF 397

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  +   +Q
Sbjct: 398 YTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQ 457

Query: 435 AKEDGVIPNLVMFKCII-GMCS 455
             + GV P+   + C+I G C+
Sbjct: 458 MIDQGVAPDKYAYNCLIQGFCT 479



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 165/377 (43%), Gaps = 9/377 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149
           P L T+N ++     ++  + A   LR +    +  +   Y  LI   + +G+      V
Sbjct: 255 PDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRV 314

Query: 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209
           F EM    I P+V T   L+    K G++ +A   +  M  K   PD   +N ++     
Sbjct: 315 FKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYAT 374

Query: 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269
            G +    D+   M  +   + PD  T   L+KA AN G +D+A  ++  +  + +K   
Sbjct: 375 KGCLVDMTDLFDLMLGD--GIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDV 432

Query: 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQ 328
             Y   I    + G  + A   ++ M  +GV PD+   + LI  F  H G +  A E++ 
Sbjct: 433 VTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTH-GSLLKAKELIS 491

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           E  N G+ + I+ +SS++           A  +++   ++ L P     N L+   C   
Sbjct: 492 EIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVG 551

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
           ++ K + V   M S G+ PN + Y  L+    +   ++ GL L  +  + G+ P+ +++ 
Sbjct: 552 KMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 611

Query: 449 CII-GMCSRRYEKARTL 464
            II G+    +E  RT+
Sbjct: 612 IIIDGL----FEAGRTV 624



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 161/341 (47%), Gaps = 11/341 (3%)

Query: 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217
           + P  HTY  L+D C +A +   A   +G +    ++ + ++ N L+    ++   D A 
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169

Query: 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIA 275
           D+L     E+  V PD  +   L+K+  + G+  +A ++ +M+ +     +P V  Y   
Sbjct: 170 DILLHRTPELGCV-PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTV 228

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
           I+   + GD   AC ++ +M ++G+ PD V  ++++     A  ++ A   L++  N+ +
Sbjct: 229 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 288

Query: 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395
                +Y++L+   S+   W++A+ +++ M+   + P V T++ L+ +LC   ++ +  +
Sbjct: 289 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 348

Query: 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455
           V   M   G  P+  +Y+I+L     K  +     L      DG+ P+   F  +I    
Sbjct: 349 VFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLI---- 404

Query: 456 RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 496
           + Y     L++ ++ FN    ++ +      ++ YR  I A
Sbjct: 405 KAYANCGMLDKAMIIFN----EMRDHGVKPDVVTYRTVIAA 441


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 200/461 (43%), Gaps = 16/461 (3%)

Query: 8   MLQFPYPNGKHANYAH--DVSEQLHSYNRLIRQ------GRISECIDLLEDMERKGLLDM 59
           ++++ Y +  H  Y    D+      Y   IR       GR +  + LL +M  +G  + 
Sbjct: 121 LVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGC-EF 179

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVL 115
           + V +    +    +    EA+  F  +      P + TFN L+ V     + + + ++ 
Sbjct: 180 NAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLF 239

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175
             V + G+  +   +   I    + G +D    +   +V+ G+ P+V +Y  LI G  K 
Sbjct: 240 SKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKH 299

Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
            ++ +A      M +  V+P+   +N +I    ++G +  A  +L +  A      PD  
Sbjct: 300 SKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRD--AMFKGFIPDEF 357

Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
           T  +L+    N G ++RA  V+    +   K +  +Y   +   S+ G    A  +  DM
Sbjct: 358 TYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDM 417

Query: 296 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355
            + G  PD    + +++     G +  A  IL +A  +G    I ++++L+      +N 
Sbjct: 418 MEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNM 477

Query: 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
            KA+E+ + M S  + P V T N L+  LC   +L   ++    M   G  PN ITY+IL
Sbjct: 478 DKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNIL 537

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 455
           + +  +   V   + L  + K  G+ P++V    +I G+CS
Sbjct: 538 IESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCS 578



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 124/515 (24%), Positives = 205/515 (39%), Gaps = 76/515 (14%)

Query: 43  ECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           E   L ++M ++G+    L  +K+ H     +CK +  ++E+ + F  V      P L T
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHV----LCK-KGNVQESEKLFSKVMKRGVCPNLFT 253

Query: 95  FNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           FN+ +  +C      E A ++L  +   GL  D   Y TLI    K  K+       H+M
Sbjct: 254 FNIFIQGLCRKGAIDEAA-RLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           VN+G+EPN  TY  +I+G  KAG +  A         K   PD   +++LI      G +
Sbjct: 313 VNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDM 372

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
           +RA  V  E  A         I    L+K  +  G V +A ++ K + ++        Y 
Sbjct: 373 NRAMAVFYE--AMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYN 430

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           + +N   + G    A  + +D   KG IPD    + LID       ++ A EIL    + 
Sbjct: 431 LVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH 490

Query: 334 GISVGIISYSSLMGACSNAKNW-----------------------------------QKA 358
           GI+  +I+Y++L+     A+                                      +A
Sbjct: 491 GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLV 417
           +EL++ MK+  L P + T+  LI  LC   +L K  E+   + K      +T  ++I++ 
Sbjct: 551 MELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMIN 610

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477
           A   K +V +   L  +       P+   ++ +I      Y K   ++            
Sbjct: 611 AFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMID----SYCKTGNID------------ 654

Query: 478 IENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 512
                  LA     E I  G +P+     KVL CL
Sbjct: 655 -------LAHTFLLENISKGLVPSFTTCGKVLNCL 682



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/336 (20%), Positives = 147/336 (43%), Gaps = 16/336 (4%)

Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
           +Y  ++    + GKV     VF  M     EP+V +Y A+++   + G  ++A   Y  M
Sbjct: 78  VYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRM 137

Query: 189 RSKNVKPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
           +   + PD       + +    G+  A  R  + +     E + V    +  G   + C 
Sbjct: 138 KDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENC- 196

Query: 246 NAGQVDRAREVYKMIHKYNIKGT-PEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIP 302
              Q+    E Y +  +   +G  P++ T    I+   + G+ + +  ++  + K+GV P
Sbjct: 197 ---QI----EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCP 249

Query: 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 361
           +    +  I      G ++ A  +L+   ++G++  +ISY++L+ G C ++K  +    L
Sbjct: 250 NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYL 309

Query: 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
           ++ + S  ++P   T N +I   C    +    ++L D    G  P+  TYS L+     
Sbjct: 310 HKMVNS-GVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368

Query: 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 457
             D+   + +  +A E G   +++++  ++   S++
Sbjct: 369 DGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQ 404



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 83/195 (42%), Gaps = 3/195 (1%)

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEA 322
            K T E Y   I      G +E    V  +M K     + + V++  + D+ G  GKV+ 
Sbjct: 36  FKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDY-GRKGKVQE 94

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A  + +          + SY+++M        + +A ++Y  MK I + P V T    + 
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMK 154

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442
           + C   +    + +L++M   G   N ++Y  ++    +++       L  +  + G+ P
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICP 214

Query: 443 NLVMFKCIIGMCSRR 457
           +++ F  +I +  ++
Sbjct: 215 DILTFNKLIHVLCKK 229


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 179/428 (41%), Gaps = 8/428 (1%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           SY  L+R      R ++ + LL  M+  G+      Y      +C +     A++     
Sbjct: 96  SYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEM 155

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P +  ++ L+     +   E   +V   +   G++ D  +YT LI +  + GKV
Sbjct: 156 CESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKV 215

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
                V   M   G+EPNV TY  LI+   K G V +A      M  K V+PD V +N L
Sbjct: 216 KKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTL 275

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
           IT       +D A  +L EM      V PD +T  +++      G + +A +V  M+ + 
Sbjct: 276 ITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAEN 335

Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
             +     + + I    +    + A  + D+M   G+ PD    S LI+      +VE A
Sbjct: 336 GCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERA 395

Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
              L E ++QG+    + Y  L+ A  +     +A +L+  M     K   +  + +I  
Sbjct: 396 ESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDR-NCKLDAAAYSTMIHG 454

Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
                +     E L DM   GL P+ +TYSI +    +  D+     +L Q    G +P+
Sbjct: 455 AFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPD 514

Query: 444 LVMFKCII 451
           + +F  +I
Sbjct: 515 VAVFDSLI 522



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 155/336 (46%), Gaps = 4/336 (1%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +L   P   ++  LM    + + +  A  +LR +Q+ G++ D   Y TLI     +  VD
Sbjct: 87  RLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVD 146

Query: 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204
              E+ +EM  +GIEPNV  Y  L+ G  K G+       +  M  + ++PD V++ ALI
Sbjct: 147 TAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALI 206

Query: 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264
            +  + G V +A  V+  M      ++P+ +T   L+ +    G V  A ++ K + +  
Sbjct: 207 DSLCRHGKVKKAARVMDMMTE--RGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKG 264

Query: 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK--KGVIPDEVFLSALIDFAGHAGKVEA 322
           ++     Y   I   S   + + A ++ ++M +    V PD +  +++I      G +  
Sbjct: 265 VQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQ 324

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382
           A ++       G    +++++ L+G        +KA+EL + M S  L+P   T + LI 
Sbjct: 325 ALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILIN 384

Query: 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418
             C   Q+ +    LS+M+  G+ P  + Y  LL A
Sbjct: 385 GFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKA 420



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 171/371 (46%), Gaps = 13/371 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           + L R G++ +   +++ M  +GL      Y+    ++CK + +++EA    K +     
Sbjct: 207 DSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCK-EGSVREALDLRKNMSEKGV 265

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLR--LVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            P + T+N L++  +S  + + A  +L   +  E  ++ D   + ++I    K G +   
Sbjct: 266 QPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQA 325

Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
            +V   M   G   N+  +  LI G  +  +V KA      M S  ++PD   ++ LI  
Sbjct: 326 LQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILING 385

Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
             +   V+RA   L+EM  +    +P H     L+KA  + G + +AR+++  + + N K
Sbjct: 386 FCKMRQVERAESYLSEMRHQGMEPEPVHYI--PLLKAMCDQGMMGQARDLFNEMDR-NCK 442

Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326
                Y+  I+   ++G+ + A     DM  +G+IPD V  S  I+    +G + AA  +
Sbjct: 443 LDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERV 502

Query: 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM--KSIKLKP-TVSTMNALITA 383
           L++    G    +  + SL+       + +K LEL   M  K + L P  +ST+   + A
Sbjct: 503 LKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTSLGA 562

Query: 384 LCDGDQLPKTM 394
             +G +L +++
Sbjct: 563 SIEGQKLLQSL 573



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 123/263 (46%), Gaps = 4/263 (1%)

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-PDHITIGALMKACANAGQVDRAR 254
           D V +N ++ A  + G +D A  +L  M+ E      P+ I+   LM+A     +  +A 
Sbjct: 55  DAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQAV 114

Query: 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314
            + + +    ++     Y   I       D + A  + ++M + G+ P+ V  S L+   
Sbjct: 115 GLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGY 174

Query: 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
              G+ E+  ++ +E   +GI   ++ Y++L+ +       +KA  + + M    L+P V
Sbjct: 175 CKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNV 234

Query: 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434
            T N LI ++C    + + +++  +M   G+ P+ +TY+ L+       +++  + LL +
Sbjct: 235 VTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEE 294

Query: 435 --AKEDGVIPNLVMFKCII-GMC 454
               E  V P+L+ F  +I G+C
Sbjct: 295 MMQGETRVRPDLMTFNSVIHGLC 317



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 2/142 (1%)

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164
           S + + A + L+ + + GL  D   Y+  I   AKSG + A   V  +M  +G  P+V  
Sbjct: 458 SGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAV 517

Query: 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224
           + +LI G    G   K       M +K+V  D  + + ++T+ G S    +    L   +
Sbjct: 518 FDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTSLGASIEGQKLLQSLPGFD 577

Query: 225 AEVHPVD--PDHITIGALMKAC 244
            E+   D    H  +  L K C
Sbjct: 578 TEISKGDVISPHDVMNMLQKHC 599


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 192/426 (45%), Gaps = 21/426 (4%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + LVP+    TF  +M       D +GA ++   + E G          ++    K G+V
Sbjct: 218 YGLVPDE--KTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRV 275

Query: 144 DAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
           +       EM N  G  P+ +T+  L++G  KAG V  A     +M  +   PD   +N+
Sbjct: 276 EDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNS 335

Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
           +I+   + G V  A + L +M        P+ +T   L+       QV+ A E+ +++  
Sbjct: 336 VISGLCKLGEVKEAVEFLDQMIT--RDCSPNTVTYNTLISTLCKENQVEEATELARVLTS 393

Query: 263 YNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
             I   P+V T    I     T +   A  ++++M  KG  PDE   + LID     GK+
Sbjct: 394 KGI--LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451

Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380
           + A  +L++ +  G +  +I+Y++L+     A   ++A E+++ M+   +     T N L
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTL 511

Query: 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440
           I  LC   ++    +++  M   G  P+  TY+ LL    R  D++    ++     +G 
Sbjct: 512 IDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571

Query: 441 IPNLVMFKCII-GMC-SRRYEKARTLNEHV------LSFNSGRPQIE----NKWTSLALM 488
            P++V +  +I G+C + R E A  L   +      L+ ++  P I+     + T+ A+ 
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAIN 631

Query: 489 VYREAI 494
           ++RE +
Sbjct: 632 LFREML 637



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/463 (22%), Positives = 198/463 (42%), Gaps = 14/463 (3%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +   + ++N LI    R  ++   I +LEDM   GL+  +K +        + +  +  A
Sbjct: 185 IKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIE-EGDLDGA 243

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ-VLRLVQEA----GLKADCKLYTTLIT 135
            R  + +     S  N+ ++V       EG  +  L  +QE     G   D   + TL+ 
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
              K+G V    E+   M+  G +P+V+TY ++I G  K G+V +A      M +++  P
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSP 363

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + V +N LI+   +   V+ A ++   + ++   + PD  T  +L++          A E
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSK--GILPDVCTFNSLIQGLCLTRNHRVAME 421

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
           +++ +     +     Y + I+     G  + A ++   M   G     +  + LID   
Sbjct: 422 LFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFC 481

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
            A K+  A EI  E +  G+S   ++Y++L+     ++  + A +L + M     KP   
Sbjct: 482 KANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKF 541

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
           T N+L+T  C G  + K  +++  M S G  P+ +TY  L+    +   VEV   LL   
Sbjct: 542 TYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI 601

Query: 436 KEDGVIPNLVMFKCIIGMCSRRYEKARTLN--EHVLSFNSGRP 476
           +  G+      +  +I    R+ +    +N    +L  N   P
Sbjct: 602 QMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAAP 644



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 159/352 (45%), Gaps = 7/352 (1%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181
           G+K D   +  LI    ++ ++     +  +M + G+ P+  T+  ++ G  + G +  A
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGA 243

Query: 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 241
                 M         V  N ++    + G V+ A + + EM+ +     PD  T   L+
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLV 302

Query: 242 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKG 299
                AG V  A E+  ++ +      P+VYT    I+   + G+ + A    D M  + 
Sbjct: 303 NGLCKAGHVKHAIEIMDVMLQEGYD--PDVYTYNSVISGLCKLGEVKEAVEFLDQMITRD 360

Query: 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359
             P+ V  + LI       +VE A E+ +   ++GI   + +++SL+      +N + A+
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420

Query: 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419
           EL+E M+S   +P   T N LI +LC   +L + + +L  M+  G   + ITY+ L+   
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480

Query: 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 469
            + + +     +  + +  GV  N V +  +I G+C SRR E A  L + ++
Sbjct: 481 CKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMI 532



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 168/378 (44%), Gaps = 7/378 (1%)

Query: 98  LMSVCASSKDSEGAFQVLRLV-QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156
           L+    S  D   A ++  L  ++     +  LY  ++    +SG  D M ++  +M N+
Sbjct: 53  LLDSLRSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNS 112

Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAFG-AYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
           G E     +  LI+  A+     +  G  + ++    +KPD   +N ++        +  
Sbjct: 113 GCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKL 172

Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
                A+M+  V  + PD  T   L+KA   A Q+  A  + + +  Y +    + +T  
Sbjct: 173 VEIAHAKMS--VWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTI 230

Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-G 334
           +    + GD + A  + + M + G     V ++ ++      G+VE A   +QE  NQ G
Sbjct: 231 MQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDG 290

Query: 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
                 ++++L+     A + + A+E+ + M      P V T N++I+ LC   ++ + +
Sbjct: 291 FFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350

Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 453
           E L  M +    PNT+TY+ L+    +++ VE    L       G++P++  F  +I G+
Sbjct: 351 EFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 454 C-SRRYEKARTLNEHVLS 470
           C +R +  A  L E + S
Sbjct: 411 CLTRNHRVAMELFEEMRS 428


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/456 (23%), Positives = 202/456 (44%), Gaps = 43/456 (9%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS 93
            G   E   +   M  KGL+     +++   ++CK  ++ K+A   F+ +      P L 
Sbjct: 347 SGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRS-KDAEEIFQYMTTKGHMPDLV 405

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           ++++L+   A+         +   + + G+ A+C  +  LI+  AK G +D    VF EM
Sbjct: 406 SYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEM 465

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
              G+ P+V TY  LI    + G++A A   +  M S  ++P+ VV+++LI      G +
Sbjct: 466 QGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDL 525

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
            +A ++++EM ++  P  P+ +   +++ +  N G+V  A +V+ ++     + T   + 
Sbjct: 526 VKAKELVSEMMSKGIP-RPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFN 584

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI---------------------- 311
             I+     G  E A  V D M   G+ PD V  + L+                      
Sbjct: 585 SLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHK 644

Query: 312 -------------DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQK 357
                        D   HAG+  AA ++  E  + G +V I +Y  L+ G C N     +
Sbjct: 645 KVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLT-DE 703

Query: 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
           A+ L+  + ++  K  ++ +N +I AL    +  +  ++ + + + GL PN  TY +++ 
Sbjct: 704 AITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIH 763

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
              ++  VE    + S  ++ G  P+  +   II M
Sbjct: 764 NLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRM 799



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 196/438 (44%), Gaps = 11/438 (2%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + S+N +I    +QG +S+  +L+ +M +KG+      Y++    +CK++   K   
Sbjct: 261 SPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAEL 320

Query: 82  RFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
              ++V     P   T+  ++   + S   + + ++ R +   GL      + + +++  
Sbjct: 321 VLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLC 380

Query: 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198
           K G+     E+F  M   G  P++ +Y  L+ G A  G+ A     +  M  K +  +  
Sbjct: 381 KHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCH 440

Query: 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
            FN LI+A  + G +D A  V  EM  +   V PD +T   L+ A    G++  A E + 
Sbjct: 441 CFNILISAHAKRGMMDEAMLVFTEMQGQ--GVRPDVVTYSTLISAFCRMGRLADAMEKFS 498

Query: 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHA 317
            +    ++    VY   I+     GD   A  +  +M  KG+  P+ VF S++I    + 
Sbjct: 499 QMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNE 558

Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
           G+V  A ++     + G    I++++SL+         +KA  + + M S+ ++P V T 
Sbjct: 559 GRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTY 618

Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
           N L++  C   ++   + +  +M    + P T+TYSI+L              +  +  +
Sbjct: 619 NTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMID 678

Query: 438 DGVIPNLVMFKCII-GMC 454
            G   ++  +K ++ G+C
Sbjct: 679 SGTAVDIDTYKILLKGLC 696



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 172/393 (43%), Gaps = 7/393 (1%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVF 150
           ++ T+ +LM  C  ++  +        +  AGL+       T +     + + D   +V 
Sbjct: 155 SVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVL 214

Query: 151 -HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK--PDRVVFNALITAC 207
            H M + G  PN  +Y  +I       +  +A      M  +  +  PD V FN +I   
Sbjct: 215 LHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGF 274

Query: 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
            + G V +A +++ EM  +   V+PD +T  +++ A   A  +D+A  V + +    ++ 
Sbjct: 275 FKQGEVSKACNLINEMVQK--GVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEP 332

Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
               YT  I+  S +G W+ +  ++  MT KG+IP  V  ++ +      G+ + A EI 
Sbjct: 333 DGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIF 392

Query: 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387
           Q    +G    ++SYS L+   +    +     L+  M    +       N LI+A    
Sbjct: 393 QYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKR 452

Query: 388 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447
             + + M V ++M+  G+ P+ +TYS L+ A  R   +   +   SQ    G+ PN V++
Sbjct: 453 GMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVY 512

Query: 448 KCII-GMCSR-RYEKARTLNEHVLSFNSGRPQI 478
             +I G C      KA+ L   ++S    RP I
Sbjct: 513 HSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNI 545



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 130/577 (22%), Positives = 233/577 (40%), Gaps = 71/577 (12%)

Query: 40  RISECID-LLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRFFKLVP--NPTLS 93
           R  E +D LL  M   G +     Y+    ++C   +SQ+A+    R  K     +P + 
Sbjct: 206 RTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVV 265

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153
           +FN ++       +   A  ++  + + G++ D   Y +++    K+  +D    V  +M
Sbjct: 266 SFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQM 325

Query: 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213
           V+ G+EP+  TY A+I G + +G   ++   +  M SK + P  V FN+ +++  + G  
Sbjct: 326 VDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRS 385

Query: 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273
             A ++   M  + H   PD ++   L+   A  G+      ++  +    I      + 
Sbjct: 386 KDAEEIFQYMTTKGHM--PDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFN 443

Query: 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333
           I I+  ++ G  + A  V+ +M  +GV PD V  S LI      G++  A E   +  + 
Sbjct: 444 ILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISI 503

Query: 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKS-------------------------- 367
           G+    + Y SL+       +  KA EL   M S                          
Sbjct: 504 GLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMD 563

Query: 368 ----------IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417
                     I  +PT+ T N+LI   C   ++ K   VL  M S+G+ P+ +TY+ L+ 
Sbjct: 564 AHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVS 623

Query: 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRP 476
              +   ++ GL+L  +     V P  V +  ++ G+                 F++GR 
Sbjct: 624 GYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGL-----------------FHAGR- 665

Query: 477 QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALK 536
                 TS A  ++ E I +GT   ++    +L  L      D    L   LG       
Sbjct: 666 ------TSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFD 719

Query: 537 RSNLCSLIDGFGEYDPR--AFSLLEEAASFGIVPCVS 571
            + L ++I+   +   R  A  L    ++ G+VP VS
Sbjct: 720 ITILNTVINALYKVRRREEANDLFAAISTSGLVPNVS 756



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 143/339 (42%), Gaps = 12/339 (3%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           Y+ LI      G + +  +L+ +M  KG+   + V+ +   +   ++  + +A   F LV
Sbjct: 512 YHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLV 571

Query: 88  ----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 PT+ TFN L+         E AF VL  +   G++ D   Y TL++   KSGK+
Sbjct: 572 IHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKI 631

Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
           D    +F EM++  ++P   TY  ++DG   AG+ + A   +  M       D   +  L
Sbjct: 632 DDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKIL 691

Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHK 262
           +    ++   D A  +  ++ A     D   ITI   ++ A     + + A +++  I  
Sbjct: 692 LKGLCRNDLTDEAITLFHKLGAMDCKFD---ITILNTVINALYKVRRREEANDLFAAIST 748

Query: 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322
             +      Y + I+   + G  E A +++  M K G  P    L+ +I      G +  
Sbjct: 749 SGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVK 808

Query: 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361
           A   + +     IS+   + S LM   S+    ++ ++ 
Sbjct: 809 AGYYMSKVDGTIISLEASTTSLLMSLFSSKGKHREQIKF 847


>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 938

 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 109/427 (25%), Positives = 188/427 (44%), Gaps = 44/427 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L R GRI E   L++DM  KG + +D + +    +V            FFK       
Sbjct: 477 NHLKRIGRIKEVKGLVKDMVSKG-VTLDHINYTSLIDV------------FFK------- 516

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
                         D E A      +QE  +  D   Y  LI+   K GKV A +  +  
Sbjct: 517 ------------GGDEEAALSWAEEMQEKEMPWDVVSYNVLISGLLKFGKVGADW-AYKG 563

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           M   GIEP++ T+  +++   K G        +  M+S  +KP  ++ N ++    + G 
Sbjct: 564 MREKGIEPDIATFNIMMNSQRKQGDFEGILKLWDKMKSCGIKPSLMICNIVVGMLCEKGK 623

Query: 213 VDRAFDVLAEMN-AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271
           +  A D+L +M   E+H   P+  T    +   +   + D   + ++ +  Y IK + +V
Sbjct: 624 MKEAIDILDQMMFMEIH---PNLTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLSRQV 680

Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID--FAG-HAGKVEAAFEILQ 328
           Y   I    + G    A  V +DM  +G +PD V  +AL+   F G H GK  + + ++ 
Sbjct: 681 YNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMM 740

Query: 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388
           EA   GIS  + +Y++++   S+A   ++  +    MKS  ++P   T NALI+      
Sbjct: 741 EA---GISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIG 797

Query: 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448
              ++M +  +M + GL P T TY++L+    +   +     L+ +  +  V PN   + 
Sbjct: 798 NKKESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKMLQATELMKEMGKRRVSPNTSTYC 857

Query: 449 CII-GMC 454
            +I G+C
Sbjct: 858 TMISGLC 864



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 117/518 (22%), Positives = 215/518 (41%), Gaps = 26/518 (5%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCA 103
           LLED E   ++     Y A    +CK+       F   +++     P + T++ +++   
Sbjct: 355 LLEDNEVPNVV----TYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYV 410

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163
                E A  ++R +++  +  +   Y T+I    K+GK +   E+  EM   G+E N +
Sbjct: 411 KKGMLEEAVSLMRKMEDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNY 470

Query: 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
              AL++   + G++ +  G    M SK V  D + + +LI    + G  + A     EM
Sbjct: 471 ILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDHINYTSLIDVFFKGGDEEAALSWAEEM 530

Query: 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283
             +  P D   ++   L+      G+V  A   YK + +  I+     + I +N   + G
Sbjct: 531 QEKEMPWDV--VSYNVLISGLLKFGKVG-ADWAYKGMREKGIEPDIATFNIMMNSQRKQG 587

Query: 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343
           D+E    ++D M   G+ P  +  + ++      GK++ A +IL +     I   + +Y 
Sbjct: 588 DFEGILKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPNLTTYR 647

Query: 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403
             +   S  K      + +E + S  +K +    N LI  LC      K   V+ DM++ 
Sbjct: 648 IFLDMSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEAR 707

Query: 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS-----RRY 458
           G  P+T+T++ L+        V   L   S   E G+ PN+  +  II   S     +  
Sbjct: 708 GFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEV 767

Query: 459 E------KARTLNEHVLSFN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 509
           E      K+R +     ++N   SG+ +I NK  S+   +Y E I  G +P     + ++
Sbjct: 768 EKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMT--IYCEMIADGLVPKTSTYNVLI 825

Query: 510 GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 547
                         L++ +G    +   S  C++I G 
Sbjct: 826 SEFAKVGKMLQATELMKEMGKRRVSPNTSTYCTMISGL 863



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 175/418 (41%), Gaps = 68/418 (16%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           NRL + G++ E   LL +ME  G      VY                          P  
Sbjct: 267 NRLCKDGKVMEGGLLLREMEEMG------VY--------------------------PNH 294

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152
            T+  L+     +KD   A  +   +   G+  D  +YT L+    K+G +    + F  
Sbjct: 295 VTYTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKM 354

Query: 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212
           ++     PNV TY AL+DG  KAG ++ A      M  K+V P+ V ++++I    + G 
Sbjct: 355 LLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGM 414

Query: 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272
           ++ A  ++ +M  E   V P+  T G ++     AG+ + A E+ K +    ++    + 
Sbjct: 415 LEEAVSLMRKM--EDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNYIL 472

Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF---EILQE 329
              +N   + G  +    +  DM  KGV  D +  ++LID     G  EAA    E +QE
Sbjct: 473 DALVNHLKRIGRIKEVKGLVKDMVSKGVTLDHINYTSLIDVFFKGGDEEAALSWAEEMQE 532

Query: 330 A-------------------------------KNQGISVGIISYSSLMGACSNAKNWQKA 358
                                           + +GI   I +++ +M +     +++  
Sbjct: 533 KEMPWDVVSYNVLISGLLKFGKVGADWAYKGMREKGIEPDIATFNIMMNSQRKQGDFEGI 592

Query: 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
           L+L++ MKS  +KP++   N ++  LC+  ++ + +++L  M  + + PN  TY I L
Sbjct: 593 LKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPNLTTYRIFL 650



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 171/396 (43%), Gaps = 48/396 (12%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFEVF 150
           +S F+ L  +  S     GA + L  +   G+  D  L+ +LI     +G V D +  V+
Sbjct: 58  VSLFHTLFRLYLSCGRLYGAARTLSAMCTFGVVPDLCLWNSLIHQFNVNGLVHDQVSLVY 117

Query: 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
            +M+  G+ P+V     LI    K GQ++ A     ++R++ +  D V +N +I+   + 
Sbjct: 118 SKMIACGVSPDVFALNVLIHSLCKVGQLSFAIS---LLRNRVISVDTVTYNTVISGLCEH 174

Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270
           G  D A+  L+EM      + PD ++   L+      G   RA+ +   I + N+     
Sbjct: 175 GLADEAYQFLSEMVK--IGILPDTVSFNTLIDGFCKVGNFARAKALVDEISELNLI---- 228

Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330
            +TI I+        E A   Y DM   G  PD V  S++I+     GKV     +L+E 
Sbjct: 229 THTILISSYYNLHAIEEA---YRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREM 285

Query: 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHM------------------------- 365
           +  G+    ++Y++L+ +   AK+++ AL LY  M                         
Sbjct: 286 EEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDL 345

Query: 366 ----KSIKL------KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415
               K+ K+       P V T  AL+  LC    L     +++ M    + PN +TYS +
Sbjct: 346 REAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSM 405

Query: 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
           +    +K  +E  + L+ + ++  V+PN   +  +I
Sbjct: 406 INGYVKKGMLEEAVSLMRKMEDQNVVPNGFTYGTVI 441



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 197/436 (45%), Gaps = 23/436 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKE 79
           VS  + + N LI    + G++S  I LL    R  ++ +D V Y+     +C+   A  E
Sbjct: 125 VSPDVFALNVLIHSLCKVGQLSFAISLL----RNRVISVDTVTYNTVISGLCEHGLA-DE 179

Query: 80  AFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A++F     K+   P   +FN L+       +   A  ++  + E  L      +T LI+
Sbjct: 180 AYQFLSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALVDEISELNLIT----HTILIS 235

Query: 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
           +      + A+ E + +MV +G +P+V T+ ++I+   K G+V +       M    V P
Sbjct: 236 SYYN---LHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYP 292

Query: 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255
           + V +  L+ +  ++     A  + ++M     PVD    T+  LM     AG +  A +
Sbjct: 293 NHVTYTTLVDSLFKAKDYRHALALYSQMVVRGIPVDLVVYTV--LMAGLFKAGDLREAEK 350

Query: 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315
            +KM+ + N       YT  ++   + GD   A  +   M +K V P+ V  S++I+   
Sbjct: 351 TFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYV 410

Query: 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 375
             G +E A  ++++ ++Q +     +Y +++     A   + A E+ + M+ I ++    
Sbjct: 411 KKGMLEEAVSLMRKMEDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNY 470

Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435
            ++AL+  L    ++ +   ++ DM S G+  + I Y+ L+    +  D E  L    + 
Sbjct: 471 ILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDHINYTSLIDVFFKGGDEEAALSWAEEM 530

Query: 436 KEDGVIPNLVMFKCII 451
           +E  +  ++V +  +I
Sbjct: 531 QEKEMPWDVVSYNVLI 546


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,966,297,837
Number of Sequences: 23463169
Number of extensions: 358248065
Number of successful extensions: 1072088
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8092
Number of HSP's successfully gapped in prelim test: 4679
Number of HSP's that attempted gapping in prelim test: 851312
Number of HSP's gapped (non-prelim): 75397
length of query: 601
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 452
effective length of database: 8,863,183,186
effective search space: 4006158800072
effective search space used: 4006158800072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)