Query 007510
Match_columns 601
No_of_seqs 750 out of 3923
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 11:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.6E-86 3.5E-91 716.0 70.7 573 23-595 368-940 (1060)
2 PLN03077 Protein ECB2; Provisi 100.0 6.9E-68 1.5E-72 583.3 47.2 511 28-561 54-651 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 4.6E-65 9.9E-70 560.9 49.0 507 27-571 150-727 (857)
4 PLN03218 maturation of RBCL 1; 100.0 6.6E-62 1.4E-66 525.3 60.8 464 31-503 412-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.7E-60 3.6E-65 512.5 49.5 458 71-569 97-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 6.8E-58 1.5E-62 492.3 50.0 451 37-504 135-612 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.4E-28 1.6E-32 271.3 60.8 547 22-592 326-894 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8.1E-27 1.8E-31 262.9 61.9 520 22-562 360-898 (899)
9 PRK11447 cellulose synthase su 99.9 4.1E-18 8.8E-23 193.3 60.7 286 21-313 58-428 (1157)
10 PRK11788 tetratricopeptide rep 99.9 1.6E-20 3.4E-25 189.9 36.2 301 101-444 44-353 (389)
11 PRK11788 tetratricopeptide rep 99.9 3.1E-20 6.7E-25 187.8 36.1 276 172-455 45-326 (389)
12 PRK11447 cellulose synthase su 99.9 3E-18 6.6E-23 194.3 50.1 388 34-438 278-700 (1157)
13 KOG4626 O-linked N-acetylgluco 99.9 2E-19 4.2E-24 173.4 33.2 392 29-437 52-450 (966)
14 PRK15174 Vi polysaccharide exp 99.9 9.1E-18 2E-22 178.1 47.5 328 98-437 48-380 (656)
15 KOG4626 O-linked N-acetylgluco 99.9 4.4E-19 9.6E-24 171.0 31.7 387 37-444 94-489 (966)
16 PRK15174 Vi polysaccharide exp 99.9 1.5E-17 3.4E-22 176.4 45.2 321 71-402 52-380 (656)
17 PRK10049 pgaA outer membrane p 99.9 2.4E-17 5.1E-22 178.8 46.6 404 28-445 17-461 (765)
18 TIGR00990 3a0801s09 mitochondr 99.9 8.4E-17 1.8E-21 171.4 49.5 388 33-438 135-571 (615)
19 TIGR00990 3a0801s09 mitochondr 99.8 5.7E-16 1.2E-20 165.1 51.1 333 95-437 130-536 (615)
20 KOG4422 Uncharacterized conser 99.8 1E-15 2.2E-20 141.8 43.3 408 21-439 112-591 (625)
21 PRK14574 hmsH outer membrane p 99.8 3.9E-15 8.5E-20 158.4 50.2 444 20-476 29-518 (822)
22 PRK10049 pgaA outer membrane p 99.8 1.1E-15 2.4E-20 165.8 43.3 395 67-474 21-459 (765)
23 PRK09782 bacteriophage N4 rece 99.8 7.4E-14 1.6E-18 151.9 53.0 510 37-576 56-716 (987)
24 PRK09782 bacteriophage N4 rece 99.8 1.7E-12 3.8E-17 141.4 57.3 432 28-475 185-710 (987)
25 PRK14574 hmsH outer membrane p 99.7 4.6E-13 9.9E-18 142.8 47.6 415 70-493 43-503 (822)
26 KOG2002 TPR-containing nuclear 99.7 2E-13 4.3E-18 139.4 41.1 414 20-438 265-745 (1018)
27 KOG2002 TPR-containing nuclear 99.7 2.2E-13 4.8E-18 139.1 40.2 277 124-409 449-749 (1018)
28 KOG2076 RNA polymerase III tra 99.7 5.1E-11 1.1E-15 121.4 51.7 370 27-401 141-553 (895)
29 KOG2003 TPR repeat-containing 99.7 1.2E-13 2.5E-18 129.2 29.2 411 37-456 213-706 (840)
30 KOG4422 Uncharacterized conser 99.7 7.2E-12 1.6E-16 116.7 40.7 323 92-421 116-480 (625)
31 KOG1155 Anaphase-promoting com 99.6 3.1E-11 6.6E-16 113.8 37.7 332 88-437 160-494 (559)
32 PF13429 TPR_15: Tetratricopep 99.6 6.3E-15 1.4E-19 141.1 12.8 224 133-364 50-273 (280)
33 KOG2076 RNA polymerase III tra 99.6 3.6E-11 7.8E-16 122.4 39.1 359 73-436 151-553 (895)
34 KOG1155 Anaphase-promoting com 99.6 1.3E-10 2.8E-15 109.7 39.9 368 68-452 171-548 (559)
35 TIGR00540 hemY_coli hemY prote 99.6 1E-11 2.2E-16 125.3 35.0 290 73-366 96-397 (409)
36 PF13429 TPR_15: Tetratricopep 99.6 1.3E-14 2.7E-19 139.0 12.8 256 32-295 15-274 (280)
37 KOG1915 Cell cycle control pro 99.6 1.3E-10 2.9E-15 109.8 38.5 435 17-466 58-531 (677)
38 PRK10747 putative protoheme IX 99.6 1.2E-11 2.7E-16 123.9 34.0 283 105-400 97-387 (398)
39 PRK10747 putative protoheme IX 99.6 2E-11 4.4E-16 122.4 34.1 281 74-367 97-389 (398)
40 KOG0495 HAT repeat protein [RN 99.6 1.5E-09 3.2E-14 106.8 44.5 369 94-482 481-854 (913)
41 KOG0495 HAT repeat protein [RN 99.6 4.9E-09 1.1E-13 103.2 47.7 416 24-456 375-799 (913)
42 TIGR00540 hemY_coli hemY prote 99.5 3.2E-11 6.9E-16 121.7 34.1 288 103-400 95-396 (409)
43 COG2956 Predicted N-acetylgluc 99.5 2E-10 4.4E-15 103.5 33.2 221 105-333 48-278 (389)
44 KOG2003 TPR repeat-containing 99.5 1.5E-10 3.4E-15 108.6 31.5 390 66-466 206-684 (840)
45 KOG1126 DNA-binding cell divis 99.5 1.4E-11 3E-16 121.7 25.5 283 142-438 334-620 (638)
46 COG3071 HemY Uncharacterized e 99.5 4E-10 8.7E-15 104.9 32.4 286 105-402 97-389 (400)
47 COG2956 Predicted N-acetylgluc 99.5 2E-10 4.3E-15 103.6 29.2 271 175-453 48-324 (389)
48 KOG1126 DNA-binding cell divis 99.5 2.4E-11 5.1E-16 120.0 24.6 258 177-446 334-592 (638)
49 KOG0547 Translocase of outer m 99.4 2E-09 4.4E-14 102.5 32.9 387 33-437 123-565 (606)
50 KOG1915 Cell cycle control pro 99.4 6.3E-08 1.4E-12 92.1 42.0 366 62-439 74-467 (677)
51 KOG1173 Anaphase-promoting com 99.4 1.1E-09 2.3E-14 106.3 30.6 370 71-454 151-532 (611)
52 KOG2047 mRNA splicing factor [ 99.4 2.6E-08 5.5E-13 98.2 40.0 399 33-437 110-614 (835)
53 COG3071 HemY Uncharacterized e 99.4 8E-09 1.7E-13 96.4 33.4 286 140-437 97-389 (400)
54 KOG4318 Bicoid mRNA stability 99.4 3.5E-10 7.6E-15 114.8 26.2 264 89-389 22-286 (1088)
55 PRK12370 invasion protein regu 99.3 1.4E-09 3E-14 114.2 30.0 248 74-334 274-536 (553)
56 KOG1173 Anaphase-promoting com 99.3 9E-09 1.9E-13 100.0 32.5 287 122-418 239-531 (611)
57 TIGR02521 type_IV_pilW type IV 99.3 1.9E-09 4.1E-14 100.3 27.2 200 234-437 31-231 (234)
58 TIGR02521 type_IV_pilW type IV 99.3 2E-09 4.3E-14 100.2 27.3 196 129-329 33-228 (234)
59 PRK12370 invasion protein regu 99.3 3.1E-09 6.7E-14 111.5 31.4 249 195-454 254-519 (553)
60 PF13041 PPR_2: PPR repeat fam 99.3 4.5E-12 9.7E-17 85.1 6.4 50 372-421 1-50 (50)
61 KOG4318 Bicoid mRNA stability 99.3 1.8E-09 3.8E-14 109.9 27.1 275 113-424 11-286 (1088)
62 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.8E-16 82.8 6.7 50 160-209 1-50 (50)
63 KOG1129 TPR repeat-containing 99.3 9.8E-10 2.1E-14 99.2 19.6 234 196-437 222-457 (478)
64 KOG1174 Anaphase-promoting com 99.2 4.2E-07 9.1E-12 85.2 34.9 309 122-444 189-504 (564)
65 KOG1156 N-terminal acetyltrans 99.2 1.8E-06 4E-11 85.7 41.2 389 38-440 20-470 (700)
66 KOG0547 Translocase of outer m 99.2 9.4E-07 2E-11 84.7 36.6 154 280-437 337-490 (606)
67 KOG1129 TPR repeat-containing 99.2 5.1E-09 1.1E-13 94.7 19.8 228 167-402 228-457 (478)
68 KOG2376 Signal recognition par 99.2 7.7E-06 1.7E-10 80.6 44.1 417 28-468 15-517 (652)
69 PF12569 NARP1: NMDA receptor- 99.2 1.2E-07 2.5E-12 96.4 32.1 288 71-366 14-332 (517)
70 PF12569 NARP1: NMDA receptor- 99.2 3.5E-07 7.6E-12 92.9 35.2 289 137-437 14-333 (517)
71 KOG1174 Anaphase-promoting com 99.2 5.1E-06 1.1E-10 78.1 39.2 426 29-472 47-501 (564)
72 KOG3785 Uncharacterized conser 99.1 3.3E-06 7.1E-11 77.7 36.3 379 32-434 29-453 (557)
73 KOG1840 Kinesin light chain [C 99.1 1.6E-07 3.5E-12 94.1 30.5 169 127-295 199-393 (508)
74 KOG2047 mRNA splicing factor [ 99.1 1.3E-05 2.9E-10 79.6 46.6 464 9-503 12-585 (835)
75 KOG1840 Kinesin light chain [C 99.1 8E-08 1.7E-12 96.3 28.1 240 197-436 199-477 (508)
76 KOG1156 N-terminal acetyltrans 99.1 4E-06 8.7E-11 83.4 37.5 350 73-438 19-434 (700)
77 PRK11189 lipoprotein NlpI; Pro 99.1 3.4E-07 7.3E-12 88.0 29.1 219 211-439 40-266 (296)
78 PRK11189 lipoprotein NlpI; Pro 99.0 4.5E-07 9.8E-12 87.1 28.5 126 129-260 66-191 (296)
79 KOG3785 Uncharacterized conser 99.0 9.3E-06 2E-10 74.8 34.3 400 27-454 57-504 (557)
80 COG3063 PilF Tfp pilus assembl 99.0 5.5E-07 1.2E-11 78.2 25.1 199 130-333 38-236 (250)
81 COG3063 PilF Tfp pilus assembl 99.0 6.4E-07 1.4E-11 77.8 24.8 198 236-437 37-235 (250)
82 cd05804 StaR_like StaR_like; a 99.0 5.3E-06 1.1E-10 82.8 35.6 304 128-437 7-335 (355)
83 KOG2376 Signal recognition par 99.0 8E-06 1.7E-10 80.4 34.8 395 21-435 42-517 (652)
84 KOG4162 Predicted calmodulin-b 99.0 1.3E-05 2.8E-10 81.5 36.3 374 58-437 320-782 (799)
85 cd05804 StaR_like StaR_like; a 99.0 6.8E-06 1.5E-10 82.0 34.7 302 94-402 8-335 (355)
86 PRK04841 transcriptional regul 98.9 3.6E-05 7.9E-10 87.1 41.3 337 102-438 384-760 (903)
87 KOG0624 dsRNA-activated protei 98.8 9.4E-05 2E-09 68.2 33.7 314 58-402 35-369 (504)
88 KOG4162 Predicted calmodulin-b 98.8 4.7E-05 1E-09 77.5 33.9 421 122-578 318-795 (799)
89 KOG0624 dsRNA-activated protei 98.8 0.00011 2.5E-09 67.6 31.8 317 21-368 34-370 (504)
90 PF04733 Coatomer_E: Coatomer 98.8 3.5E-07 7.7E-12 86.5 16.2 150 171-333 111-265 (290)
91 KOG0548 Molecular co-chaperone 98.8 5.8E-05 1.3E-09 73.8 31.1 386 33-438 10-455 (539)
92 PF04733 Coatomer_E: Coatomer 98.7 7E-07 1.5E-11 84.5 17.2 82 354-437 182-264 (290)
93 KOG1127 TPR repeat-containing 98.7 6.7E-05 1.5E-09 78.5 32.2 149 38-189 471-623 (1238)
94 PRK04841 transcriptional regul 98.7 0.00015 3.2E-09 82.2 38.7 331 73-403 386-760 (903)
95 KOG1125 TPR repeat-containing 98.7 1.4E-06 3E-11 85.5 18.7 218 207-436 295-525 (579)
96 KOG4340 Uncharacterized conser 98.7 5.9E-05 1.3E-09 68.1 26.5 288 31-329 16-335 (459)
97 PF12854 PPR_1: PPR repeat 98.7 4.1E-08 8.8E-13 59.0 4.2 32 157-188 2-33 (34)
98 KOG1070 rRNA processing protei 98.6 2.2E-05 4.7E-10 84.7 26.9 232 194-430 1455-1692(1710)
99 KOG1914 mRNA cleavage and poly 98.6 0.00055 1.2E-08 67.2 34.0 388 58-453 17-481 (656)
100 PF12854 PPR_1: PPR repeat 98.6 4E-08 8.6E-13 59.0 3.8 32 369-400 2-33 (34)
101 KOG0548 Molecular co-chaperone 98.6 0.0004 8.7E-09 68.2 33.0 380 71-473 12-457 (539)
102 PLN02789 farnesyltranstransfer 98.6 0.00011 2.3E-09 70.7 28.8 212 97-316 42-267 (320)
103 KOG0985 Vesicle coat protein c 98.6 0.0011 2.4E-08 69.8 36.3 321 24-399 983-1304(1666)
104 KOG1125 TPR repeat-containing 98.6 1.2E-05 2.7E-10 79.1 21.6 253 137-395 295-563 (579)
105 KOG3616 Selective LIM binding 98.5 6.7E-05 1.4E-09 75.7 25.6 169 204-399 739-907 (1636)
106 KOG1128 Uncharacterized conser 98.5 1.7E-05 3.6E-10 80.3 21.5 212 132-366 403-614 (777)
107 KOG3617 WD40 and TPR repeat-co 98.5 0.0018 3.9E-08 66.8 35.8 173 132-329 943-1170(1416)
108 KOG1070 rRNA processing protei 98.5 9.4E-05 2E-09 80.1 28.0 245 148-399 1445-1696(1710)
109 KOG1128 Uncharacterized conser 98.5 1.2E-05 2.5E-10 81.3 20.0 233 198-453 399-632 (777)
110 KOG0985 Vesicle coat protein c 98.5 0.0019 4.1E-08 68.1 35.8 250 135-435 1056-1305(1666)
111 PLN02789 farnesyltranstransfer 98.5 0.00025 5.5E-09 68.2 28.3 210 134-351 44-267 (320)
112 KOG4340 Uncharacterized conser 98.5 7.1E-05 1.5E-09 67.6 22.5 314 95-434 13-335 (459)
113 TIGR03302 OM_YfiO outer membra 98.5 2.4E-05 5.1E-10 72.9 19.9 187 89-299 30-233 (235)
114 KOG1914 mRNA cleavage and poly 98.5 0.002 4.3E-08 63.5 39.8 406 26-437 17-500 (656)
115 COG5010 TadD Flp pilus assembl 98.5 4E-05 8.7E-10 68.3 19.4 126 128-258 101-226 (257)
116 COG4783 Putative Zn-dependent 98.4 0.00077 1.7E-08 65.7 29.1 219 213-455 253-473 (484)
117 KOG3616 Selective LIM binding 98.4 0.0011 2.4E-08 67.4 30.9 194 134-363 739-932 (1636)
118 PRK10370 formate-dependent nit 98.4 5E-05 1.1E-09 67.8 20.1 115 319-437 54-172 (198)
119 TIGR03302 OM_YfiO outer membra 98.4 6.9E-05 1.5E-09 69.7 21.6 65 126-191 32-99 (235)
120 PRK10370 formate-dependent nit 98.4 8.4E-05 1.8E-09 66.4 20.9 115 250-367 55-172 (198)
121 COG5010 TadD Flp pilus assembl 98.4 0.00011 2.4E-09 65.6 20.6 155 203-363 72-226 (257)
122 KOG3081 Vesicle coat complex C 98.4 0.00018 3.8E-09 64.3 21.5 150 170-332 116-270 (299)
123 COG4783 Putative Zn-dependent 98.4 0.00055 1.2E-08 66.6 25.7 114 207-325 316-429 (484)
124 PRK15359 type III secretion sy 98.3 3.3E-05 7.1E-10 65.2 15.4 95 95-191 27-121 (144)
125 PRK15359 type III secretion sy 98.3 4.4E-05 9.5E-10 64.5 15.7 89 312-402 32-120 (144)
126 PRK15179 Vi polysaccharide bio 98.3 0.00021 4.6E-09 75.9 23.7 236 126-387 27-268 (694)
127 PRK15179 Vi polysaccharide bio 98.3 0.00047 1E-08 73.3 26.1 183 230-422 82-268 (694)
128 KOG3617 WD40 and TPR repeat-co 98.3 0.0087 1.9E-07 62.0 36.8 285 37-365 812-1171(1416)
129 PRK14720 transcript cleavage f 98.2 0.00093 2E-08 71.9 27.0 160 13-191 18-178 (906)
130 PRK14720 transcript cleavage f 98.2 0.00049 1.1E-08 74.0 24.9 237 126-420 30-268 (906)
131 KOG3081 Vesicle coat complex C 98.2 0.0043 9.3E-08 55.7 26.4 246 173-437 19-270 (299)
132 KOG1127 TPR repeat-containing 98.2 0.016 3.4E-07 61.6 33.8 186 142-332 473-658 (1238)
133 TIGR02552 LcrH_SycD type III s 98.2 9.2E-05 2E-09 62.0 14.9 23 342-364 54-76 (135)
134 TIGR00756 PPR pentatricopeptid 98.1 4.3E-06 9.4E-11 51.0 4.1 33 376-408 2-34 (35)
135 TIGR02552 LcrH_SycD type III s 98.1 0.00017 3.8E-09 60.3 14.9 120 326-450 5-124 (135)
136 KOG3060 Uncharacterized conser 98.0 0.0054 1.2E-07 54.7 23.1 86 246-333 98-183 (289)
137 TIGR00756 PPR pentatricopeptid 98.0 8.9E-06 1.9E-10 49.6 4.3 33 164-196 2-34 (35)
138 PF13812 PPR_3: Pentatricopept 98.0 9.3E-06 2E-10 49.1 3.7 32 376-407 3-34 (34)
139 KOG2053 Mitochondrial inherita 98.0 0.036 7.8E-07 58.4 42.9 224 35-264 19-256 (932)
140 KOG3060 Uncharacterized conser 97.9 0.012 2.6E-07 52.6 23.4 127 237-366 55-181 (289)
141 PF13812 PPR_3: Pentatricopept 97.9 1.6E-05 3.4E-10 48.1 4.1 33 163-195 2-34 (34)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0006 1.3E-08 67.0 15.9 120 274-400 174-294 (395)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00088 1.9E-08 65.9 16.5 126 235-366 170-295 (395)
144 PF09976 TPR_21: Tetratricopep 97.8 0.0021 4.5E-08 54.5 16.5 85 277-363 56-142 (145)
145 PF09976 TPR_21: Tetratricopep 97.8 0.0017 3.8E-08 54.9 15.3 118 210-329 24-143 (145)
146 PF10037 MRP-S27: Mitochondria 97.7 0.00067 1.4E-08 67.0 14.0 125 193-317 62-186 (429)
147 PF10037 MRP-S27: Mitochondria 97.7 0.0005 1.1E-08 67.9 13.0 123 265-387 62-186 (429)
148 PF01535 PPR: PPR repeat; Int 97.7 3.6E-05 7.8E-10 45.3 3.0 29 376-404 2-30 (31)
149 PF08579 RPM2: Mitochondrial r 97.7 0.00063 1.4E-08 52.4 10.1 77 97-173 30-115 (120)
150 PF08579 RPM2: Mitochondrial r 97.7 0.00055 1.2E-08 52.7 9.7 81 129-209 27-116 (120)
151 KOG2041 WD40 repeat protein [G 97.7 0.03 6.6E-07 57.0 24.2 376 77-492 679-1107(1189)
152 PF01535 PPR: PPR repeat; Int 97.7 5.6E-05 1.2E-09 44.5 3.3 29 164-192 2-30 (31)
153 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0022 4.8E-08 52.1 13.9 16 173-188 13-28 (119)
154 cd00189 TPR Tetratricopeptide 97.6 0.0014 2.9E-08 50.4 11.6 91 97-189 5-95 (100)
155 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0035 7.7E-08 50.8 13.8 97 95-191 5-105 (119)
156 cd00189 TPR Tetratricopeptide 97.5 0.0017 3.6E-08 49.9 11.2 24 412-435 71-94 (100)
157 PF05843 Suf: Suppressor of fo 97.5 0.0026 5.6E-08 60.5 13.5 129 271-402 3-135 (280)
158 PLN03088 SGT1, suppressor of 97.5 0.0033 7.2E-08 62.0 14.6 85 316-402 14-98 (356)
159 KOG2796 Uncharacterized conser 97.4 0.03 6.5E-07 50.3 18.5 39 10-48 6-44 (366)
160 PF06239 ECSIT: Evolutionarily 97.4 0.0024 5.1E-08 55.9 10.8 105 89-212 44-153 (228)
161 PRK15363 pathogenicity island 97.4 0.0064 1.4E-07 50.8 12.7 97 92-190 35-131 (157)
162 PLN03088 SGT1, suppressor of 97.4 0.0056 1.2E-07 60.4 14.8 89 101-191 11-99 (356)
163 PF05843 Suf: Suppressor of fo 97.3 0.0046 9.9E-08 58.8 13.4 131 235-368 2-136 (280)
164 PRK15363 pathogenicity island 97.3 0.0089 1.9E-07 49.9 13.2 94 272-367 38-131 (157)
165 PRK10153 DNA-binding transcrip 97.3 0.017 3.8E-07 59.6 18.0 63 373-437 419-481 (517)
166 PF06239 ECSIT: Evolutionarily 97.3 0.0032 7E-08 55.1 10.5 116 124-260 44-165 (228)
167 KOG0550 Molecular chaperone (D 97.3 0.18 4E-06 48.5 22.7 285 102-438 59-350 (486)
168 PRK02603 photosystem I assembl 97.3 0.016 3.5E-07 50.6 15.3 86 271-357 37-124 (172)
169 PRK10153 DNA-binding transcrip 97.3 0.02 4.3E-07 59.2 18.0 145 264-413 332-490 (517)
170 PF12895 Apc3: Anaphase-promot 97.2 0.00069 1.5E-08 51.1 5.6 47 106-152 3-50 (84)
171 PRK10866 outer membrane biogen 97.2 0.11 2.3E-06 48.3 20.8 185 90-296 30-239 (243)
172 PF12895 Apc3: Anaphase-promot 97.2 0.00077 1.7E-08 50.8 5.3 17 346-362 32-48 (84)
173 KOG2053 Mitochondrial inherita 97.2 0.43 9.4E-06 50.7 40.9 222 73-300 21-257 (932)
174 PF14938 SNAP: Soluble NSF att 97.2 0.075 1.6E-06 50.8 20.1 151 310-478 100-267 (282)
175 PRK02603 photosystem I assembl 97.2 0.019 4.1E-07 50.2 14.9 94 91-185 34-129 (172)
176 CHL00033 ycf3 photosystem I as 97.2 0.016 3.4E-07 50.5 13.9 80 270-350 36-117 (168)
177 KOG0553 TPR repeat-containing 97.1 0.0058 1.3E-07 56.0 11.2 96 350-450 92-188 (304)
178 KOG0553 TPR repeat-containing 97.1 0.0066 1.4E-07 55.7 11.3 100 314-418 91-191 (304)
179 PF14559 TPR_19: Tetratricopep 97.1 0.0018 3.9E-08 46.4 6.3 52 35-88 1-52 (68)
180 CHL00033 ycf3 photosystem I as 97.1 0.011 2.3E-07 51.6 12.3 27 236-262 74-100 (168)
181 PRK10866 outer membrane biogen 97.1 0.12 2.7E-06 47.8 19.6 55 345-399 181-237 (243)
182 PF12688 TPR_5: Tetratrico pep 97.0 0.037 8E-07 44.5 13.8 55 278-332 10-66 (120)
183 COG4235 Cytochrome c biogenesi 97.0 0.033 7.1E-07 51.5 15.1 30 338-367 155-184 (287)
184 PF14559 TPR_19: Tetratricopep 96.9 0.0034 7.3E-08 45.0 6.5 51 105-156 4-54 (68)
185 KOG2796 Uncharacterized conser 96.9 0.31 6.6E-06 44.1 25.1 142 270-414 178-324 (366)
186 PF12688 TPR_5: Tetratrico pep 96.9 0.058 1.2E-06 43.4 13.5 53 172-224 11-65 (120)
187 PF13432 TPR_16: Tetratricopep 96.8 0.005 1.1E-07 43.6 6.5 54 348-402 6-59 (65)
188 COG4235 Cytochrome c biogenesi 96.8 0.039 8.5E-07 51.0 13.4 100 124-225 153-255 (287)
189 PF14938 SNAP: Soluble NSF att 96.8 0.12 2.6E-06 49.3 17.4 25 273-297 159-183 (282)
190 PF04840 Vps16_C: Vps16, C-ter 96.7 0.61 1.3E-05 45.0 28.2 110 271-400 179-288 (319)
191 PF13432 TPR_16: Tetratricopep 96.7 0.0073 1.6E-07 42.7 6.4 50 138-188 8-57 (65)
192 COG4700 Uncharacterized protei 96.6 0.38 8.1E-06 41.2 19.1 129 159-291 86-215 (251)
193 PF13525 YfiO: Outer membrane 96.6 0.41 9E-06 43.0 18.5 59 98-156 11-71 (203)
194 PF13414 TPR_11: TPR repeat; P 96.6 0.012 2.6E-07 42.2 7.0 62 92-154 3-65 (69)
195 COG3898 Uncharacterized membra 96.5 0.82 1.8E-05 43.9 31.5 286 74-378 97-399 (531)
196 PF13414 TPR_11: TPR repeat; P 96.5 0.014 3E-07 41.9 7.1 59 236-295 5-64 (69)
197 PF04840 Vps16_C: Vps16, C-ter 96.5 0.89 1.9E-05 43.9 28.8 107 306-432 179-285 (319)
198 KOG1130 Predicted G-alpha GTPa 96.4 0.059 1.3E-06 51.6 12.3 264 102-366 27-342 (639)
199 PF13525 YfiO: Outer membrane 96.4 0.56 1.2E-05 42.2 18.5 20 347-366 149-168 (203)
200 COG3898 Uncharacterized membra 96.4 0.95 2.1E-05 43.5 28.7 67 374-442 329-396 (531)
201 PRK10803 tol-pal system protei 96.4 0.078 1.7E-06 49.5 13.1 97 128-226 144-246 (263)
202 COG4700 Uncharacterized protei 96.4 0.56 1.2E-05 40.1 18.6 130 301-434 86-218 (251)
203 PRK10803 tol-pal system protei 96.3 0.071 1.5E-06 49.8 12.1 51 173-225 154-208 (263)
204 PF03704 BTAD: Bacterial trans 96.2 0.031 6.8E-07 47.3 8.6 69 130-199 65-138 (146)
205 KOG2041 WD40 repeat protein [G 96.1 2.1 4.5E-05 44.5 29.9 61 376-436 1023-1084(1189)
206 PF13371 TPR_9: Tetratricopept 96.1 0.032 7E-07 40.5 7.3 53 349-402 5-57 (73)
207 PF12921 ATP13: Mitochondrial 96.1 0.11 2.3E-06 42.3 10.5 51 193-244 48-98 (126)
208 PF13371 TPR_9: Tetratricopept 96.0 0.045 9.7E-07 39.7 7.7 52 137-189 5-56 (73)
209 COG4649 Uncharacterized protei 96.0 0.42 9.1E-06 40.3 13.7 122 34-155 67-195 (221)
210 PF03704 BTAD: Bacterial trans 96.0 0.054 1.2E-06 45.8 9.0 72 94-166 64-140 (146)
211 KOG1538 Uncharacterized conser 95.9 1.5 3.3E-05 45.0 19.5 39 44-86 619-657 (1081)
212 PF12921 ATP13: Mitochondrial 95.9 0.18 4E-06 41.0 11.1 82 198-279 3-98 (126)
213 PRK15331 chaperone protein Sic 95.8 0.15 3.2E-06 43.0 10.6 82 37-120 49-133 (165)
214 KOG1130 Predicted G-alpha GTPa 95.8 0.18 4E-06 48.4 12.2 132 306-437 197-343 (639)
215 KOG3941 Intermediate in Toll s 95.7 0.094 2E-06 47.7 9.5 124 81-223 54-185 (406)
216 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.24 5.1E-06 49.1 13.0 71 14-86 64-137 (453)
217 PF07079 DUF1347: Protein of u 95.6 2.7 5.9E-05 41.5 40.4 135 37-174 18-179 (549)
218 KOG2280 Vacuolar assembly/sort 95.5 3.9 8.5E-05 43.0 25.3 57 337-399 713-769 (829)
219 PF04053 Coatomer_WDAD: Coatom 95.5 0.94 2E-05 46.0 17.0 169 24-223 260-428 (443)
220 KOG1538 Uncharacterized conser 95.5 1.5 3.2E-05 45.0 17.8 213 126-367 555-801 (1081)
221 COG5107 RNA14 Pre-mRNA 3'-end 95.4 2.9 6.4E-05 41.1 32.8 145 304-454 397-545 (660)
222 KOG1258 mRNA processing protei 95.4 3.8 8.1E-05 42.0 39.5 129 26-156 42-180 (577)
223 PF13281 DUF4071: Domain of un 95.4 3 6.6E-05 40.8 19.5 31 408-438 304-334 (374)
224 COG3118 Thioredoxin domain-con 95.3 2.5 5.3E-05 39.4 18.1 50 139-189 146-195 (304)
225 PRK15331 chaperone protein Sic 95.1 1.8 3.9E-05 36.7 15.1 90 276-367 44-133 (165)
226 COG3118 Thioredoxin domain-con 95.1 1.3 2.8E-05 41.2 14.8 52 35-88 144-195 (304)
227 KOG0550 Molecular chaperone (D 95.0 3.8 8.2E-05 40.0 24.3 258 33-298 57-350 (486)
228 PF13424 TPR_12: Tetratricopep 95.0 0.082 1.8E-06 38.9 5.9 61 376-436 7-73 (78)
229 PF13424 TPR_12: Tetratricopep 94.9 0.082 1.8E-06 38.9 5.7 62 340-401 6-73 (78)
230 KOG2114 Vacuolar assembly/sort 94.8 6.2 0.00014 42.1 20.5 149 60-223 367-516 (933)
231 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.15 3.3E-06 50.4 8.7 99 336-440 72-176 (453)
232 PF04053 Coatomer_WDAD: Coatom 94.6 1.4 3.1E-05 44.7 15.4 130 129-293 297-426 (443)
233 smart00299 CLH Clathrin heavy 94.5 2.4 5.2E-05 35.4 15.4 41 133-174 13-53 (140)
234 KOG3941 Intermediate in Toll s 94.5 0.31 6.7E-06 44.5 9.2 118 124-262 64-187 (406)
235 smart00299 CLH Clathrin heavy 94.3 2.6 5.7E-05 35.1 15.5 84 239-330 12-95 (140)
236 PRK11906 transcriptional regul 94.2 4.9 0.00011 40.2 17.5 116 250-367 274-400 (458)
237 PF10300 DUF3808: Protein of u 94.2 2.5 5.4E-05 43.5 16.5 177 147-332 177-375 (468)
238 PF13281 DUF4071: Domain of un 93.8 7.2 0.00016 38.3 20.8 29 270-298 306-334 (374)
239 KOG0543 FKBP-type peptidyl-pro 93.8 1 2.2E-05 43.7 11.7 71 341-414 259-329 (397)
240 PF10300 DUF3808: Protein of u 93.7 6.2 0.00013 40.7 18.2 16 35-50 6-21 (468)
241 PF09205 DUF1955: Domain of un 93.5 3.3 7.2E-05 33.4 12.8 139 281-441 14-152 (161)
242 PF09205 DUF1955: Domain of un 93.5 3.4 7.4E-05 33.4 13.8 63 307-370 89-151 (161)
243 PF13512 TPR_18: Tetratricopep 93.4 3.1 6.7E-05 34.4 12.3 80 98-177 16-97 (142)
244 PRK11906 transcriptional regul 93.3 5.6 0.00012 39.8 16.1 143 75-222 272-432 (458)
245 COG1729 Uncharacterized protei 93.3 1.5 3.3E-05 40.3 11.4 58 240-297 184-243 (262)
246 KOG0543 FKBP-type peptidyl-pro 93.2 2 4.4E-05 41.8 12.7 95 270-366 258-353 (397)
247 COG3629 DnrI DNA-binding trans 93.2 1.1 2.4E-05 41.8 10.7 78 128-206 154-236 (280)
248 KOG4555 TPR repeat-containing 93.2 3.6 7.7E-05 33.1 11.8 91 101-192 52-145 (175)
249 COG1729 Uncharacterized protei 93.2 1.5 3.2E-05 40.4 11.3 98 165-263 145-244 (262)
250 KOG2610 Uncharacterized conser 93.1 2.5 5.3E-05 39.9 12.6 116 174-294 115-234 (491)
251 KOG2610 Uncharacterized conser 93.0 3.2 6.9E-05 39.2 13.1 116 139-259 115-234 (491)
252 PF13170 DUF4003: Protein of u 93.0 8.9 0.00019 36.7 18.0 130 286-417 79-225 (297)
253 PF13170 DUF4003: Protein of u 92.9 5.1 0.00011 38.3 15.0 47 145-191 80-132 (297)
254 KOG1920 IkappaB kinase complex 92.7 20 0.00043 40.2 23.0 132 275-434 914-1051(1265)
255 PF08631 SPO22: Meiosis protei 92.5 9.9 0.00022 36.1 25.4 62 199-263 86-150 (278)
256 PF13428 TPR_14: Tetratricopep 92.4 0.58 1.3E-05 29.8 5.6 25 239-263 6-30 (44)
257 KOG4555 TPR repeat-containing 92.3 3 6.5E-05 33.6 10.2 91 348-439 52-145 (175)
258 COG0457 NrfG FOG: TPR repeat [ 92.2 8.5 0.00019 34.6 30.0 200 235-438 60-265 (291)
259 PF13512 TPR_18: Tetratricopep 92.1 4.6 0.0001 33.4 11.7 23 240-262 53-75 (142)
260 PF04184 ST7: ST7 protein; In 92.0 13 0.00028 37.6 16.5 60 343-402 263-323 (539)
261 KOG1585 Protein required for f 92.0 9.3 0.0002 34.6 17.6 85 165-261 34-118 (308)
262 KOG1920 IkappaB kinase complex 92.0 18 0.00038 40.6 18.8 137 165-329 911-1051(1265)
263 PF13428 TPR_14: Tetratricopep 91.9 0.64 1.4E-05 29.6 5.3 29 271-299 3-31 (44)
264 COG4105 ComL DNA uptake lipopr 91.7 10 0.00023 34.7 20.8 22 346-367 174-195 (254)
265 PRK09687 putative lyase; Provi 91.6 12 0.00027 35.4 30.2 238 85-349 30-277 (280)
266 KOG1941 Acetylcholine receptor 91.6 11 0.00023 36.3 14.7 127 239-365 127-272 (518)
267 COG3629 DnrI DNA-binding trans 91.6 2.5 5.4E-05 39.6 10.8 77 236-313 155-236 (280)
268 COG4785 NlpI Lipoprotein NlpI, 90.2 13 0.00028 33.1 17.0 178 248-438 79-266 (297)
269 KOG2280 Vacuolar assembly/sort 90.2 28 0.00061 37.0 32.1 302 120-436 425-771 (829)
270 PF10602 RPN7: 26S proteasome 90.2 6.5 0.00014 34.3 11.6 61 129-189 38-100 (177)
271 PF04184 ST7: ST7 protein; In 90.1 23 0.00051 35.8 17.2 61 308-368 263-324 (539)
272 KOG2114 Vacuolar assembly/sort 89.8 27 0.00058 37.7 17.2 177 165-366 337-517 (933)
273 PF07079 DUF1347: Protein of u 89.8 23 0.0005 35.3 36.1 398 39-451 59-532 (549)
274 PF07035 Mic1: Colon cancer-as 89.8 12 0.00026 32.1 15.0 133 183-332 15-148 (167)
275 cd00923 Cyt_c_Oxidase_Va Cytoc 89.8 4 8.8E-05 30.9 8.3 64 389-454 22-86 (103)
276 COG5107 RNA14 Pre-mRNA 3'-end 89.7 23 0.0005 35.3 23.8 131 162-298 397-531 (660)
277 PF09613 HrpB1_HrpK: Bacterial 89.5 12 0.00026 31.7 12.2 53 208-263 21-73 (160)
278 PF10602 RPN7: 26S proteasome 89.5 4.4 9.6E-05 35.4 10.1 89 376-464 38-135 (177)
279 PF02284 COX5A: Cytochrome c o 89.4 5.1 0.00011 30.7 8.7 61 392-454 28-89 (108)
280 KOG0276 Vesicle coat complex C 89.1 5.6 0.00012 40.8 11.4 155 31-222 592-746 (794)
281 PF09613 HrpB1_HrpK: Bacterial 89.0 13 0.00028 31.5 12.8 69 102-174 20-89 (160)
282 COG0457 NrfG FOG: TPR repeat [ 88.7 17 0.00038 32.5 29.6 201 198-402 60-264 (291)
283 PF13176 TPR_7: Tetratricopept 87.8 1.3 2.8E-05 26.6 4.0 24 165-188 2-25 (36)
284 PF13431 TPR_17: Tetratricopep 87.6 0.81 1.8E-05 27.2 3.0 30 259-289 4-33 (34)
285 COG4105 ComL DNA uptake lipopr 86.9 25 0.00054 32.3 20.4 181 94-298 37-233 (254)
286 PF00515 TPR_1: Tetratricopept 86.9 1.4 3E-05 25.9 3.8 25 377-401 4-28 (34)
287 PF07035 Mic1: Colon cancer-as 86.9 19 0.00041 30.9 15.0 134 113-262 15-148 (167)
288 KOG1586 Protein required for f 86.6 24 0.00052 31.9 12.5 28 350-377 165-192 (288)
289 PF13176 TPR_7: Tetratricopept 86.5 1.7 3.7E-05 26.1 4.1 26 411-436 1-26 (36)
290 KOG2066 Vacuolar assembly/sort 86.3 52 0.0011 35.4 27.2 150 31-189 362-532 (846)
291 PF08631 SPO22: Meiosis protei 86.2 31 0.00068 32.8 28.0 161 103-268 4-191 (278)
292 COG4649 Uncharacterized protei 85.5 22 0.00048 30.4 15.8 139 306-445 61-203 (221)
293 PF00515 TPR_1: Tetratricopept 85.1 2.3 5E-05 24.9 4.2 32 410-443 2-33 (34)
294 COG2976 Uncharacterized protei 85.1 16 0.00034 32.1 10.4 128 27-157 52-189 (207)
295 TIGR02508 type_III_yscG type I 85.1 15 0.00033 28.1 9.9 88 38-130 18-105 (115)
296 PF13431 TPR_17: Tetratricopep 85.0 1.3 2.8E-05 26.3 2.9 21 161-181 12-32 (34)
297 KOG1941 Acetylcholine receptor 84.7 40 0.00086 32.7 18.7 165 271-436 85-273 (518)
298 PF10345 Cohesin_load: Cohesin 84.4 64 0.0014 34.8 36.2 180 43-223 39-251 (608)
299 KOG1550 Extracellular protein 84.4 60 0.0013 34.5 26.6 181 108-300 228-428 (552)
300 TIGR02561 HrpB1_HrpK type III 84.2 23 0.00051 29.5 11.2 50 103-156 21-73 (153)
301 KOG4570 Uncharacterized conser 83.9 17 0.00037 34.3 10.8 98 303-402 63-163 (418)
302 PF07719 TPR_2: Tetratricopept 83.4 2.5 5.4E-05 24.6 3.8 22 380-401 7-28 (34)
303 PRK09687 putative lyase; Provi 83.2 43 0.00093 31.8 30.7 233 160-419 35-277 (280)
304 KOG1585 Protein required for f 82.9 37 0.00081 31.0 17.2 26 94-119 33-58 (308)
305 PF13929 mRNA_stabil: mRNA sta 82.7 43 0.00094 31.5 15.4 116 107-222 143-263 (292)
306 PF07575 Nucleopor_Nup85: Nup8 82.6 73 0.0016 34.0 18.8 147 289-453 390-539 (566)
307 KOG4570 Uncharacterized conser 82.5 21 0.00045 33.7 10.8 105 192-298 59-164 (418)
308 PF11207 DUF2989: Protein of u 82.1 16 0.00035 32.2 9.6 79 173-253 118-197 (203)
309 PF06552 TOM20_plant: Plant sp 81.0 15 0.00033 31.7 8.8 59 392-454 53-123 (186)
310 cd00923 Cyt_c_Oxidase_Va Cytoc 80.4 15 0.00033 27.9 7.5 45 322-366 25-69 (103)
311 KOG1550 Extracellular protein 80.3 85 0.0018 33.3 26.7 179 143-335 228-428 (552)
312 PF07719 TPR_2: Tetratricopept 80.3 4.5 9.9E-05 23.5 4.2 28 410-437 2-29 (34)
313 TIGR02508 type_III_yscG type I 79.4 21 0.00046 27.3 8.0 86 107-200 20-105 (115)
314 COG3947 Response regulator con 78.3 61 0.0013 30.5 14.8 59 272-331 282-340 (361)
315 PF13374 TPR_10: Tetratricopep 78.0 6.1 0.00013 24.2 4.5 27 270-296 3-29 (42)
316 TIGR02561 HrpB1_HrpK type III 78.0 40 0.00086 28.2 12.3 52 210-264 23-74 (153)
317 PF06552 TOM20_plant: Plant sp 77.7 34 0.00074 29.6 9.9 45 390-442 96-140 (186)
318 PF13374 TPR_10: Tetratricopep 77.6 5.9 0.00013 24.3 4.3 26 164-189 4-29 (42)
319 PF00637 Clathrin: Region in C 77.3 0.87 1.9E-05 38.2 0.4 84 345-435 13-96 (143)
320 PF07163 Pex26: Pex26 protein; 75.5 25 0.00054 32.7 9.0 87 204-292 90-181 (309)
321 PF13762 MNE1: Mitochondrial s 74.8 49 0.0011 27.6 10.7 80 377-456 42-127 (145)
322 PF13181 TPR_8: Tetratricopept 74.7 4.7 0.0001 23.5 3.1 22 379-400 6-27 (34)
323 COG4785 NlpI Lipoprotein NlpI, 74.6 64 0.0014 28.9 18.2 66 90-156 97-162 (297)
324 PF00637 Clathrin: Region in C 74.4 1.6 3.5E-05 36.6 1.3 52 100-151 15-66 (143)
325 KOG2471 TPR repeat-containing 74.1 80 0.0017 32.0 12.5 105 349-455 250-380 (696)
326 PRK11619 lytic murein transgly 73.7 1.4E+02 0.003 32.4 39.1 165 250-434 295-464 (644)
327 PRK15180 Vi polysaccharide bio 73.6 38 0.00082 34.0 10.3 123 207-334 299-421 (831)
328 COG4455 ImpE Protein of avirul 72.4 28 0.00061 31.1 8.2 52 134-186 8-59 (273)
329 KOG1464 COP9 signalosome, subu 72.2 83 0.0018 29.2 15.6 181 37-218 39-252 (440)
330 COG4455 ImpE Protein of avirul 72.1 30 0.00064 31.0 8.3 52 169-221 8-59 (273)
331 COG2976 Uncharacterized protei 71.9 70 0.0015 28.2 12.7 88 205-299 97-189 (207)
332 KOG0276 Vesicle coat complex C 71.8 50 0.0011 34.3 10.9 24 236-259 668-691 (794)
333 TIGR03504 FimV_Cterm FimV C-te 71.5 9.4 0.0002 24.3 3.9 24 415-438 5-28 (44)
334 PF09477 Type_III_YscG: Bacter 69.5 52 0.0011 25.7 8.5 80 106-192 20-99 (116)
335 PF13762 MNE1: Mitochondrial s 69.5 66 0.0014 26.9 10.4 83 342-424 42-130 (145)
336 KOG4077 Cytochrome c oxidase, 69.1 47 0.001 26.8 7.9 61 392-453 67-127 (149)
337 PF07721 TPR_4: Tetratricopept 68.7 8.1 0.00018 21.1 2.9 18 345-362 7-24 (26)
338 PF13174 TPR_6: Tetratricopept 68.3 8.4 0.00018 22.0 3.2 18 172-189 10-27 (33)
339 PF08311 Mad3_BUB1_I: Mad3/BUB 67.4 31 0.00067 28.1 7.2 58 26-85 66-123 (126)
340 KOG4648 Uncharacterized conser 67.4 36 0.00079 32.6 8.4 84 72-156 108-194 (536)
341 KOG1586 Protein required for f 66.5 1E+02 0.0023 28.0 19.2 99 384-484 164-270 (288)
342 COG5159 RPN6 26S proteasome re 66.0 1.2E+02 0.0026 28.5 11.2 34 378-411 129-166 (421)
343 PF02284 COX5A: Cytochrome c o 66.0 60 0.0013 25.1 9.3 43 289-331 30-72 (108)
344 PF13181 TPR_8: Tetratricopept 65.4 20 0.00043 20.7 4.4 27 271-297 3-29 (34)
345 PF11663 Toxin_YhaV: Toxin wit 64.4 8.2 0.00018 31.3 3.1 32 386-419 107-138 (140)
346 PF02259 FAT: FAT domain; Int 64.4 1.5E+02 0.0032 29.1 23.3 63 270-332 147-212 (352)
347 COG3947 Response regulator con 63.0 1.4E+02 0.003 28.3 16.0 59 307-366 282-340 (361)
348 cd08819 CARD_MDA5_2 Caspase ac 62.6 60 0.0013 24.3 7.1 14 318-331 50-63 (88)
349 PF14853 Fis1_TPR_C: Fis1 C-te 62.6 40 0.00086 22.5 5.7 37 415-453 7-43 (53)
350 KOG4648 Uncharacterized conser 62.1 47 0.001 31.9 8.0 50 102-152 107-156 (536)
351 TIGR03504 FimV_Cterm FimV C-te 61.9 18 0.0004 23.0 3.8 20 170-189 7-26 (44)
352 KOG4234 TPR repeat-containing 61.5 1.2E+02 0.0026 27.0 10.0 91 315-409 106-201 (271)
353 PF13929 mRNA_stabil: mRNA sta 61.0 1.5E+02 0.0033 28.0 22.0 61 231-291 199-260 (292)
354 PF09477 Type_III_YscG: Bacter 60.1 81 0.0018 24.7 9.3 81 38-122 19-99 (116)
355 KOG2297 Predicted translation 60.1 1.6E+02 0.0035 28.0 19.6 73 277-359 263-341 (412)
356 PF08424 NRDE-2: NRDE-2, neces 60.0 1.7E+02 0.0038 28.4 16.7 77 144-222 48-127 (321)
357 KOG4234 TPR repeat-containing 59.6 1.3E+02 0.0028 26.8 10.0 88 102-191 105-197 (271)
358 PF07163 Pex26: Pex26 protein; 59.6 1.2E+02 0.0026 28.5 10.0 23 310-332 124-146 (309)
359 PHA02875 ankyrin repeat protei 58.3 2.1E+02 0.0046 28.9 13.8 11 173-183 76-86 (413)
360 KOG2471 TPR repeat-containing 57.9 1.3E+02 0.0029 30.6 10.6 116 314-431 250-394 (696)
361 PF04097 Nic96: Nup93/Nic96; 57.9 2.8E+02 0.006 30.0 15.6 45 167-212 116-160 (613)
362 PF11207 DUF2989: Protein of u 56.1 1.5E+02 0.0032 26.4 15.0 73 144-217 123-198 (203)
363 PF14561 TPR_20: Tetratricopep 54.6 65 0.0014 24.3 6.5 36 20-55 17-52 (90)
364 COG1747 Uncharacterized N-term 54.6 2.6E+02 0.0057 28.8 25.2 182 90-280 64-250 (711)
365 PRK15180 Vi polysaccharide bio 54.3 2.5E+02 0.0055 28.6 29.6 136 18-157 283-421 (831)
366 KOG0991 Replication factor C, 53.6 1.8E+02 0.0039 26.6 12.3 30 195-225 237-266 (333)
367 PF10579 Rapsyn_N: Rapsyn N-te 53.4 46 0.00099 24.3 5.0 46 386-431 18-65 (80)
368 PF04190 DUF410: Protein of un 53.0 2E+02 0.0043 27.0 15.5 25 126-150 89-113 (260)
369 smart00028 TPR Tetratricopepti 52.3 25 0.00055 19.0 3.4 19 381-399 8-26 (34)
370 PF08424 NRDE-2: NRDE-2, neces 51.8 2.4E+02 0.0051 27.5 18.7 59 288-348 50-108 (321)
371 PF11848 DUF3368: Domain of un 50.5 53 0.0012 21.3 4.7 32 420-451 13-44 (48)
372 PF11663 Toxin_YhaV: Toxin wit 50.5 20 0.00044 29.1 3.3 31 139-171 107-137 (140)
373 cd08819 CARD_MDA5_2 Caspase ac 50.2 84 0.0018 23.5 6.1 36 74-110 49-84 (88)
374 COG2909 MalT ATP-dependent tra 49.4 4.1E+02 0.0089 29.6 26.1 87 138-224 426-524 (894)
375 PF14853 Fis1_TPR_C: Fis1 C-te 48.5 57 0.0012 21.7 4.7 33 380-414 7-39 (53)
376 PF02847 MA3: MA3 domain; Int 48.2 1.3E+02 0.0029 23.5 8.8 69 378-449 6-77 (113)
377 PF11848 DUF3368: Domain of un 48.1 68 0.0015 20.8 4.9 33 385-417 13-45 (48)
378 KOG0403 Neoplastic transformat 47.5 3.2E+02 0.0069 27.7 18.4 75 377-456 512-586 (645)
379 PF10366 Vps39_1: Vacuolar sor 47.5 1.3E+02 0.0029 23.6 7.5 27 271-297 41-67 (108)
380 KOG2396 HAT (Half-A-TPR) repea 46.1 3.5E+02 0.0077 27.9 36.3 242 181-437 301-558 (568)
381 COG2909 MalT ATP-dependent tra 45.3 4.8E+02 0.01 29.1 25.3 227 208-434 426-684 (894)
382 PF10579 Rapsyn_N: Rapsyn N-te 45.0 86 0.0019 23.0 5.4 45 281-325 18-64 (80)
383 PF14689 SPOB_a: Sensor_kinase 44.9 59 0.0013 22.5 4.6 21 168-188 29-49 (62)
384 PF10255 Paf67: RNA polymerase 44.8 3E+02 0.0066 27.7 11.0 61 129-189 124-191 (404)
385 smart00777 Mad3_BUB1_I Mad3/BU 44.3 79 0.0017 25.7 5.8 23 94-116 101-123 (125)
386 KOG4077 Cytochrome c oxidase, 43.2 1.8E+02 0.0039 23.6 7.3 45 288-332 68-112 (149)
387 PF07575 Nucleopor_Nup85: Nup8 43.2 2.1E+02 0.0044 30.6 10.5 32 316-347 507-538 (566)
388 PF11846 DUF3366: Domain of un 42.6 1.3E+02 0.0028 26.6 7.7 33 405-437 140-172 (193)
389 KOG4507 Uncharacterized conser 42.0 2.1E+02 0.0047 29.9 9.5 132 251-385 590-721 (886)
390 PF11846 DUF3366: Domain of un 41.5 74 0.0016 28.2 6.0 32 159-190 141-172 (193)
391 KOG0991 Replication factor C, 41.1 2.9E+02 0.0062 25.4 13.1 76 331-409 186-273 (333)
392 PF14689 SPOB_a: Sensor_kinase 39.8 64 0.0014 22.3 4.1 23 414-436 28-50 (62)
393 KOG2063 Vacuolar assembly/sort 39.5 6E+02 0.013 28.6 17.0 302 32-351 314-638 (877)
394 COG5108 RPO41 Mitochondrial DN 39.3 2.5E+02 0.0053 30.0 9.5 75 167-246 33-115 (1117)
395 KOG1258 mRNA processing protei 38.7 5E+02 0.011 27.4 33.3 367 37-425 91-491 (577)
396 PRK10564 maltose regulon perip 38.5 56 0.0012 31.0 4.7 37 377-413 260-296 (303)
397 KOG3807 Predicted membrane pro 38.1 3.8E+02 0.0082 25.9 11.8 56 167-224 280-338 (556)
398 COG0735 Fur Fe2+/Zn2+ uptake r 38.0 1.7E+02 0.0036 24.6 7.1 60 151-211 10-69 (145)
399 COG0735 Fur Fe2+/Zn2+ uptake r 37.9 2.3E+02 0.0049 23.8 7.9 63 114-177 8-70 (145)
400 PF10345 Cohesin_load: Cohesin 37.2 5.7E+02 0.012 27.7 36.9 158 31-189 65-252 (608)
401 KOG0890 Protein kinase of the 37.1 9.8E+02 0.021 30.4 26.2 147 67-221 1389-1542(2382)
402 cd00280 TRFH Telomeric Repeat 36.2 2.3E+02 0.0051 24.8 7.5 35 381-418 118-152 (200)
403 PRK10941 hypothetical protein; 36.2 3.8E+02 0.0082 25.3 10.5 56 168-224 187-242 (269)
404 KOG0890 Protein kinase of the 35.8 1E+03 0.022 30.2 26.0 313 97-437 1388-1730(2382)
405 PF09868 DUF2095: Uncharacteri 35.7 1.4E+02 0.0031 23.5 5.6 33 133-166 67-99 (128)
406 COG5108 RPO41 Mitochondrial DN 35.3 3.2E+02 0.007 29.2 9.7 75 309-386 33-115 (1117)
407 KOG4567 GTPase-activating prot 35.0 2.5E+02 0.0054 26.8 8.1 72 147-223 263-344 (370)
408 PF12862 Apc5: Anaphase-promot 34.9 1.6E+02 0.0034 22.3 6.1 53 102-154 8-68 (94)
409 PHA02875 ankyrin repeat protei 34.7 4.9E+02 0.011 26.2 15.8 38 138-179 10-49 (413)
410 cd00280 TRFH Telomeric Repeat 34.3 2.9E+02 0.0062 24.3 7.8 23 345-367 117-139 (200)
411 PRK10941 hypothetical protein; 33.7 4.2E+02 0.009 25.0 10.5 75 377-453 184-260 (269)
412 cd08332 CARD_CASP2 Caspase act 33.3 1.8E+02 0.0039 21.9 6.0 57 46-107 24-80 (90)
413 KOG4507 Uncharacterized conser 33.1 1.8E+02 0.0038 30.5 7.4 152 159-315 568-721 (886)
414 COG1782 Predicted metal-depend 33.1 27 0.00058 35.4 1.8 34 548-582 419-452 (637)
415 PRK10564 maltose regulon perip 33.0 1E+02 0.0022 29.3 5.4 36 94-129 259-294 (303)
416 PF04097 Nic96: Nup93/Nic96; 32.8 6.7E+02 0.014 27.2 20.1 284 127-436 112-441 (613)
417 PF09454 Vps23_core: Vps23 cor 32.2 79 0.0017 22.2 3.5 30 128-157 9-38 (65)
418 TIGR03362 VI_chp_7 type VI sec 32.0 4.7E+02 0.01 25.2 12.8 47 27-75 101-147 (301)
419 COG0790 FOG: TPR repeat, SEL1 31.9 4.5E+02 0.0097 24.9 22.3 45 357-404 173-221 (292)
420 PRK12798 chemotaxis protein; R 31.2 5.6E+02 0.012 25.8 20.9 83 175-261 125-212 (421)
421 PF02259 FAT: FAT domain; Int 31.0 5.1E+02 0.011 25.2 27.8 65 338-402 145-212 (352)
422 cd08326 CARD_CASP9 Caspase act 30.8 2.3E+02 0.0049 21.1 6.4 62 45-111 19-80 (84)
423 KOG3677 RNA polymerase I-assoc 30.7 5.7E+02 0.012 25.7 11.0 228 146-381 191-426 (525)
424 PF11768 DUF3312: Protein of u 30.5 6.6E+02 0.014 26.4 11.1 21 203-223 414-434 (545)
425 smart00386 HAT HAT (Half-A-TPR 30.3 1E+02 0.0022 17.0 4.1 27 249-276 2-28 (33)
426 PRK09857 putative transposase; 30.3 4.3E+02 0.0094 25.3 9.4 66 130-196 209-274 (292)
427 PF09454 Vps23_core: Vps23 cor 29.9 1.5E+02 0.0033 20.8 4.6 51 89-140 5-55 (65)
428 PRK11639 zinc uptake transcrip 29.7 3E+02 0.0066 23.7 7.6 44 135-178 33-76 (169)
429 COG2178 Predicted RNA-binding 29.3 4.1E+02 0.0088 23.6 9.0 14 318-331 135-148 (204)
430 COG4003 Uncharacterized protei 29.1 2.1E+02 0.0046 21.0 5.2 25 133-157 37-61 (98)
431 PF05944 Phage_term_smal: Phag 29.0 2.7E+02 0.0058 22.9 6.6 36 20-57 45-80 (132)
432 PRK13800 putative oxidoreducta 28.8 9.3E+02 0.02 27.6 31.2 252 85-367 628-880 (897)
433 KOG0687 26S proteasome regulat 28.4 5.6E+02 0.012 24.9 15.2 134 299-436 65-208 (393)
434 smart00804 TAP_C C-terminal do 28.4 54 0.0012 22.8 2.2 44 524-572 19-62 (63)
435 PF10366 Vps39_1: Vacuolar sor 28.1 3E+02 0.0065 21.6 8.5 26 307-332 42-67 (108)
436 PF09670 Cas_Cas02710: CRISPR- 28.1 6.2E+02 0.014 25.3 12.2 54 279-333 141-198 (379)
437 COG5159 RPN6 26S proteasome re 27.9 5.3E+02 0.012 24.5 20.7 212 26-237 4-246 (421)
438 KOG1166 Mitotic checkpoint ser 27.8 2.1E+02 0.0045 32.5 7.6 67 21-88 75-141 (974)
439 PF10475 DUF2450: Protein of u 27.2 5.6E+02 0.012 24.5 10.1 51 168-224 104-154 (291)
440 PF12862 Apc5: Anaphase-promot 27.2 2.8E+02 0.006 21.0 6.8 22 275-296 47-68 (94)
441 KOG1464 COP9 signalosome, subu 27.1 5.3E+02 0.011 24.2 19.5 22 239-260 70-91 (440)
442 PF11123 DNA_Packaging_2: DNA 27.1 1.9E+02 0.0041 20.8 4.6 33 249-282 12-44 (82)
443 PF02184 HAT: HAT (Half-A-TPR) 27.0 1.3E+02 0.0028 17.7 3.2 11 391-401 4-14 (32)
444 KOG4567 GTPase-activating prot 26.9 4.1E+02 0.0089 25.5 8.1 57 359-420 263-319 (370)
445 PF10255 Paf67: RNA polymerase 26.8 6.8E+02 0.015 25.3 12.2 63 199-261 124-191 (404)
446 PF08311 Mad3_BUB1_I: Mad3/BUB 26.6 3.5E+02 0.0076 21.9 9.8 43 110-152 81-124 (126)
447 KOG4642 Chaperone-dependent E3 26.6 5.2E+02 0.011 23.9 11.0 115 316-434 22-142 (284)
448 TIGR01503 MthylAspMut_E methyl 26.3 7.2E+02 0.016 25.5 10.7 47 318-367 68-114 (480)
449 KOG0376 Serine-threonine phosp 26.0 2.2E+02 0.0047 29.1 6.6 49 316-366 16-65 (476)
450 COG4003 Uncharacterized protei 26.0 2.4E+02 0.0053 20.7 5.0 30 310-340 37-66 (98)
451 KOG0686 COP9 signalosome, subu 25.8 6.9E+02 0.015 25.1 14.3 62 270-332 151-215 (466)
452 PF04910 Tcf25: Transcriptiona 25.5 6.8E+02 0.015 24.9 18.7 212 21-246 36-271 (360)
453 PF11817 Foie-gras_1: Foie gra 24.8 3.3E+02 0.0072 25.2 7.6 24 29-52 14-37 (247)
454 PF15297 CKAP2_C: Cytoskeleton 24.7 6.7E+02 0.015 24.6 9.9 64 390-455 119-186 (353)
455 COG1747 Uncharacterized N-term 24.6 8.2E+02 0.018 25.5 25.7 166 160-334 64-235 (711)
456 PF09868 DUF2095: Uncharacteri 24.1 3.1E+02 0.0068 21.7 5.7 24 311-334 68-91 (128)
457 KOG1308 Hsp70-interacting prot 24.1 68 0.0015 30.9 2.7 92 351-445 126-218 (377)
458 KOG2297 Predicted translation 24.0 6.5E+02 0.014 24.2 17.0 16 376-391 323-338 (412)
459 KOG3364 Membrane protein invol 23.8 4.3E+02 0.0092 22.0 10.0 23 380-402 77-99 (149)
460 KOG4642 Chaperone-dependent E3 23.2 6E+02 0.013 23.5 11.2 80 140-223 23-104 (284)
461 PF11417 Inhibitor_G39P: Loade 22.8 2.4E+02 0.0053 20.2 4.7 38 23-60 27-64 (71)
462 PRK11619 lytic murein transgly 22.6 1E+03 0.022 26.0 36.2 313 33-367 41-374 (644)
463 KOG2034 Vacuolar sorting prote 22.6 1.1E+03 0.024 26.4 30.5 92 27-128 360-451 (911)
464 PF11817 Foie-gras_1: Foie gra 22.5 4.5E+02 0.0099 24.3 8.0 55 274-328 183-242 (247)
465 PF07064 RIC1: RIC1; InterPro 22.3 6.5E+02 0.014 23.6 15.7 26 95-120 85-110 (258)
466 PRK11639 zinc uptake transcrip 21.9 5.2E+02 0.011 22.3 8.2 60 153-213 17-76 (169)
467 PRK09462 fur ferric uptake reg 21.4 4.8E+02 0.01 21.8 7.2 64 290-353 3-66 (148)
468 cd07153 Fur_like Ferric uptake 21.2 2.7E+02 0.0059 21.9 5.5 28 418-445 9-36 (116)
469 PF14561 TPR_20: Tetratricopep 21.1 3.7E+02 0.008 20.2 9.0 34 266-299 19-52 (90)
470 PRK12798 chemotaxis protein; R 21.1 8.7E+02 0.019 24.6 19.9 153 139-297 124-285 (421)
471 PF15297 CKAP2_C: Cytoskeleton 21.1 7.9E+02 0.017 24.1 9.0 62 214-279 120-185 (353)
472 KOG0376 Serine-threonine phosp 20.8 2.3E+02 0.005 28.9 5.7 101 102-207 14-115 (476)
473 KOG3636 Uncharacterized conser 20.8 8.2E+02 0.018 24.8 9.2 95 113-208 169-271 (669)
474 KOG2396 HAT (Half-A-TPR) repea 20.8 9.6E+02 0.021 24.9 30.8 68 89-157 102-170 (568)
475 COG4259 Uncharacterized protei 20.7 4.1E+02 0.0088 20.6 6.4 42 148-189 58-99 (121)
476 PRK08691 DNA polymerase III su 20.6 1.2E+03 0.025 25.8 11.2 46 286-333 181-227 (709)
477 PRK13800 putative oxidoreducta 20.2 1.3E+03 0.029 26.4 32.6 155 266-437 725-880 (897)
478 PF02607 B12-binding_2: B12 bi 20.1 2.4E+02 0.0052 20.3 4.5 33 421-453 13-45 (79)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-86 Score=715.99 Aligned_cols=573 Identities=77% Similarity=1.240 Sum_probs=555.2
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 007510 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (601)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (601)
.+.+.++..|+.+++.|++++|+++|++|.+.|+++++..++..++..|.+.|.+++|.++|+.|+.||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35888999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (601)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (601)
++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|+
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875558899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007510 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (601)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (601)
.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 007510 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (601)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 422 (601)
++||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHcCCCCcH
Q 007510 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV 502 (601)
Q Consensus 423 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 502 (601)
|++++|.++|++|.+.|+.||..+|++|+++|.+++++|+.+.+....|+.+.+.+...|+.+|+.+|++|++.|+.||.
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 99999999999999999999999999999998888999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHhccCCCCchhHHhhHHHhhCCCccccccccccccccccCCchhHHHHHHHHHHhCCCCCccccCCCCeeeccc
Q 007510 503 EVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDAR 582 (601)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~~~~~~~~ 582 (601)
.|+..+++|.....+...+..|.+.+++.|...+|..+.++|+++|...++|+.+|++|.+.|++|+..+.....++|++
T Consensus 848 ~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~ 927 (1060)
T PLN03218 848 EVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAE 927 (1060)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEcc
Confidence 99999999998888888888999999999998888888899999987667999999999999999999988889999999
Q ss_pred CCcchhhHHhhhc
Q 007510 583 KLEIHTAKVSLSF 595 (601)
Q Consensus 583 ~~~~~~~~~~~~~ 595 (601)
+++..||++++++
T Consensus 928 ~~~~~aa~~~l~~ 940 (1060)
T PLN03218 928 ELPVFAAEVYLLT 940 (1060)
T ss_pred cCcchhHHHHHHH
Confidence 9999999999954
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.9e-68 Score=583.26 Aligned_cols=511 Identities=19% Similarity=0.295 Sum_probs=442.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHhh
Q 007510 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFFNVCKS 73 (601)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~----------------------------------~~~l~~~~~~ 73 (601)
.......+++.|++++|..+|++|.+.|..|....+ ...++..+.+
T Consensus 54 ~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~ 133 (857)
T PLN03077 54 SNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh
Confidence 334455566899999999999999987754332221 1234445567
Q ss_pred hHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-----------------------
Q 007510 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY----------------------- 130 (601)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----------------------- 130 (601)
.|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|...|+.||..||
T Consensus 134 ~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~ 213 (857)
T PLN03077 134 FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213 (857)
T ss_pred CCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence 788999999999999999999999999999999999999999999998888887776
Q ss_pred ------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 131 ------------TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 131 ------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
+.||.+|+++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|...|+.||..
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ 289 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 455666677777777777777776 5677888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007510 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (601)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 278 (601)
||+.++.+|++.|+.+.|.+++..|... |+.||..+|++++.+|++.|++++|.++|+.|.. ||..+|+++|.+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~ 363 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISG 363 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHH
Confidence 8888888888888888888888888775 7888999999999999999999999999998864 566889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (601)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (601)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+|++|+++|+++|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
.++|++|. .+|..+|+++|.+|++.|+.++|+.+|++|.. +++||..||++++.+|++.|+++.+.+++..+.+.
T Consensus 444 ~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 444 LEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 99999997 58899999999999999999999999999986 59999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhHHHH------------HHHHHHHHHHcCCCCcHHHHH
Q 007510 439 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVS 506 (601)
Q Consensus 439 g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~m~~~g~~p~~~~~~ 506 (601)
|+.+|..++|+||++|++ +|++.++...|+.+ ..+..+|+.+ |+.+|++|.+.|+.||.+|+.
T Consensus 519 g~~~~~~~~naLi~~y~k----~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 593 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVR----CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593 (857)
T ss_pred CCCccceechHHHHHHHH----cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Confidence 999999999999999655 67777777777776 6677888874 999999999999999999999
Q ss_pred HHH-hccCCCC---chhHHhhHHHhhCCCccccccccccccccccCCch--hHHHHHHHHH
Q 007510 507 KVL-GCLQLPY---NADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEA 561 (601)
Q Consensus 507 ~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~--~~a~~~~~~~ 561 (601)
.++ +|++.+. +..+++.|.+.+|+.|+..+|+ ++++.+++.+ ++|.+++++|
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~---~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA---CVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH---HHHHHHHhCCCHHHHHHHHHHC
Confidence 876 7777664 3456778887899999999987 5777776543 6788888876
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-65 Score=560.90 Aligned_cols=507 Identities=20% Similarity=0.292 Sum_probs=392.1
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 007510 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (601)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~m~~~~~~~~~~~~----------------------------------~~~l~ 68 (601)
+++.+||.++ +.|++++|+++|++|...|+.|+...+ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 4566777776 789999999999999988875543322 23455
Q ss_pred HHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007510 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (601)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (601)
..+.+.|++++|.++|+.|+.+|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 66777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCC
Q 007510 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 228 (601)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 228 (601)
++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|. .||.++|+.+|.+|++.|++++|.++|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-- 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD-- 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 99999999999999998888888888888888888888886 467788888888888888888888888888764
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------
Q 007510 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---------- 298 (601)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------- 298 (601)
++.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+|++||.+|++.|++++|.++|++|.+.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 6677777777777777777777777777777777776666666666666666666666666665555332
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 299 --------------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 358 (601)
Q Consensus 299 --------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 358 (601)
++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++|+|+++|+++|++++|
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 356777777777777777777777777777777777777777778888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-H
Q 007510 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-E 437 (601)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~ 437 (601)
.++|+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +
T Consensus 544 ~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 544 WNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 8888876 489999999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred CCCCCCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCCCccchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCc
Q 007510 438 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 517 (601)
Q Consensus 438 ~g~~p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~ 517 (601)
.|+.|+..+|++++++|+| +|.+.+ |.+++++| +++||..+|..+++.+..+++
T Consensus 619 ~gi~P~~~~y~~lv~~l~r----~G~~~e-------------------A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGR----AGKLTE-------------------AYNFINKM---PITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred hCCCCchHHHHHHHHHHHh----CCCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Confidence 7999999999999999776 343333 33344444 466777777776655555555
Q ss_pred hhHHhhHH-HhhCCCcc-ccccccccccccccCCchhHHHHHHHHHHhCCCCCccc
Q 007510 518 ADIRERLV-ENLGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 571 (601)
Q Consensus 518 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~ 571 (601)
.+..+... +...+.|+ ++.|..+..++...|++ ++|.++.++|++.|+.++.+
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~-~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKW-DEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCCh-HHHHHHHHHHHHcCCCCCCC
Confidence 54443332 22345554 33333333334444554 35667777777777766543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.6e-62 Score=525.29 Aligned_cols=464 Identities=23% Similarity=0.399 Sum_probs=417.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC----CCCHHHHHHHHHHHHhcC
Q 007510 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSK 106 (601)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g 106 (601)
.++.+.+.|.+++|..+|+.|.. ++...+..++..|.+.|++++|.++|+.|. .||..+|+++|.+|++.|
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G 486 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc
Confidence 34455688999999999999875 355566678888889999999999998874 689999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (601)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (601)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|+
T Consensus 487 ~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 007510 187 IMRS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (601)
Q Consensus 187 ~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (601)
+|.. .|+.||.++|+.+|.+|++.|++++|.++|+.|... ++.|+..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 567 eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 9976 688999999999999999999999999999999985 789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007510 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344 (601)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (601)
+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+||.
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~ 724 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh---
Q 007510 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER--- 421 (601)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--- 421 (601)
||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+
T Consensus 725 LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ 804 (1060)
T PLN03218 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFE 804 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred -c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccch
Q 007510 422 -K-------------------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIE 479 (601)
Q Consensus 422 -~-------------------g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~ 479 (601)
. +..+.|..+|++|.+.|+.||..+|+.++.++.+ ....+..+.+.+. ..+..+ +.
T Consensus 805 ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~-~~ 882 (1060)
T PLN03218 805 KACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQ-KQ 882 (1060)
T ss_pred HHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCc-ch
Confidence 1 2246799999999999999999999999965533 3444444443221 011111 11
Q ss_pred hh----------HHHHHHHHHHHHHHcCCCCcHH
Q 007510 480 NK----------WTSLALMVYREAIVAGTIPTVE 503 (601)
Q Consensus 480 ~~----------~~~~a~~~~~~m~~~g~~p~~~ 503 (601)
.. +...|+.+|++|...|+.|+..
T Consensus 883 ~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 883 SNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence 11 2235888888898888888864
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-60 Score=512.50 Aligned_cols=458 Identities=21% Similarity=0.305 Sum_probs=406.2
Q ss_pred HhhhHHHHHHHHHHhhCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 007510 71 CKSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (601)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 145 (601)
+.+.|++++|+++|+.|. .||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++
T Consensus 97 l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~ 176 (697)
T PLN03081 97 LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID 176 (697)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHH
Confidence 344455566666665442 478899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
|.++|++|. .||..+||+++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+
T Consensus 177 A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 177 ARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999997 6899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (601)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 305 (601)
. ++.||..++++|+.+|++.|++++|.++|+.|.. +|..+||+||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 253 ~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 253 T--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred h--CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 5 7899999999999999999999999999999964 467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (601)
||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..+||+||.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997 589999999999999
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhHHHHHHh
Q 007510 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTL 464 (601)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~~~~~~~a~~~ 464 (601)
++|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|++ +|.+
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~G~~ 478 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----EGLL 478 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----cCCH
Confidence 9999999999999999999999999999999999999999999999999986 5999999999999999776 4444
Q ss_pred hhhhhhccCCCccchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHhccCCCCchhHHhh-HHHhhCCCcc-ccccccccc
Q 007510 465 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER-LVENLGVSAD-ALKRSNLCS 542 (601)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 542 (601)
.++ .+++++ .++.|+..+|..++..+...++.+.... ..+..++.|+ ...|..++.
T Consensus 479 ~eA-------------------~~~~~~---~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~ 536 (697)
T PLN03081 479 DEA-------------------YAMIRR---APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLN 536 (697)
T ss_pred HHH-------------------HHHHHH---CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHH
Confidence 433 334443 4788999999998754444444443333 3344677775 566665444
Q ss_pred cccccCCchhHHHHHHHHHHhCCCCCc
Q 007510 543 LIDGFGEYDPRAFSLLEEAASFGIVPC 569 (601)
Q Consensus 543 ~i~~~g~~~~~a~~~~~~~~~~g~~p~ 569 (601)
++...|++ ++|.+++++|.+.|+...
T Consensus 537 ~y~~~G~~-~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 537 LYNSSGRQ-AEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHhCCCH-HHHHHHHHHHHHcCCccC
Confidence 44444653 689999999999998644
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.8e-58 Score=492.30 Aligned_cols=451 Identities=18% Similarity=0.272 Sum_probs=396.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 116 (601)
+.++++.|.+++..|.+.|..| +......++..+.+.|++++|.++|++|+.||.++||+++.+|++.|++++|+++|+
T Consensus 135 ~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 135 ALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213 (697)
T ss_pred hCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHH
Confidence 5566677777777777766544 455566677888888999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007510 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (601)
Q Consensus 117 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (601)
+|.+.|+.||..+|+.++.++++.|+.+.+.+++..+.+.|+.||..+||+|+.+|++.|++++|.++|++|. ++|
T Consensus 214 ~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~ 289 (697)
T PLN03081 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKT 289 (697)
T ss_pred HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 468
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007510 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (601)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 276 (601)
.++||.+|.+|++.|+.++|.++|++|... ++.||..||++++.+|++.|++++|.+++..|.+.|+.|+..+|++||
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 999999999999999999999999999875 789999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (601)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (601)
.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.++
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 999999999999999999864 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 007510 357 KALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (601)
Q Consensus 357 ~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (601)
+|.++|+.|.+ .|+.|+..+|+.|+.+|++.|++++|.+++++| ++.|+..+|++++.+|...|+++.|..+++++
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 99999999975 689999999999999999999999999999876 47899999999999999999999999999988
Q ss_pred HHCCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhhccC--------------------C---CccchhhHHHHHHHH
Q 007510 436 KEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNS--------------------G---RPQIENKWTSLALMV 489 (601)
Q Consensus 436 ~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~--------------------~---~~~~~~~~~~~a~~~ 489 (601)
.+ +.|+ ..+|+.|+++|++ ++++|.++.+.+..-.- + .|.....+ .....+
T Consensus 521 ~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~-~~l~~l 597 (697)
T PLN03081 521 YG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIY-QKLDEL 597 (697)
T ss_pred hC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHH-HHHHHH
Confidence 75 5554 5689999999887 77787777654432210 0 11111122 235667
Q ss_pred HHHHHHcCCCCcHHH
Q 007510 490 YREAIVAGTIPTVEV 504 (601)
Q Consensus 490 ~~~m~~~g~~p~~~~ 504 (601)
..+|.+.|..||...
T Consensus 598 ~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 598 MKEISEYGYVAEENE 612 (697)
T ss_pred HHHHHHcCCCCCcch
Confidence 788999999998654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.4e-28 Score=271.34 Aligned_cols=547 Identities=15% Similarity=0.068 Sum_probs=377.6
Q ss_pred CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHH
Q 007510 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (601)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (601)
|.+..........+.+.|++++|++.++++...+ |.+......+...+...|++++|.++|+++. +.+...|..+
T Consensus 326 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 403 (899)
T TIGR02917 326 PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQL 403 (899)
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3333333333344456666677776666666554 3444444555555666667777777776543 3345566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (601)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (601)
...+...|++++|...++.+.+.. +........++..+.+.|++++|.++++.+.... +++..+|..+...|...|++
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 481 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDL 481 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCH
Confidence 666777777777777777766554 2233445556667777777777777777776543 45677888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007510 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (601)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (601)
++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++... .+.+..++..+...+.+.|+.++|...++
T Consensus 482 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 482 AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI---DPKNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888887653 445566777778888888888888888888754 23456677788888888888888988888
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (601)
++.+.+ +.+...+..++..|.+.|++++|..+++.+..... .+...|..+...+...|++++|...++.+.+.. +.+
T Consensus 558 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 634 (899)
T TIGR02917 558 KAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDS 634 (899)
T ss_pred HHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 887765 55677788888889999999999999988877643 367788888899999999999999999888765 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (601)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (601)
...+..+..+|.+.|++++|...|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.+ +++...+..+...
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 712 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDL 712 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHH
Confidence 7778888889999999999999999888754 4557888899999999999999999999988764 4567778888888
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccchhhHH------------H
Q 007510 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT------------S 484 (601)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~ 484 (601)
+...|++++|.+.++++.+.+ |+..++..+..++.+ ++++|....+.....++ .+...+. .
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP---NDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCcCHH
Confidence 999999999999999988754 444566666666654 56666665554433332 2222222 2
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHH--hccCCCCchhHHhhHHHhhCCCccccc-cccccccccccCCchhHHHHHHHHH
Q 007510 485 LALMVYREAIVAGTIPTVEVVSKVL--GCLQLPYNADIRERLVENLGVSADALK-RSNLCSLIDGFGEYDPRAFSLLEEA 561 (601)
Q Consensus 485 ~a~~~~~~m~~~g~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~g~~~~~a~~~~~~~ 561 (601)
.|...|+++++.. |+.......+ .....+. .+....+.+...+.|+... ...++.+....|+ .++|...++++
T Consensus 788 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a 863 (899)
T TIGR02917 788 KAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE-ADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 4888888887654 5544332222 2333444 4455566666666676432 2222333333455 46899999999
Q ss_pred HhCCCCCccccCC--CCeeecccCCcchhhHHh
Q 007510 562 ASFGIVPCVSFKE--IPVVVDARKLEIHTAKVS 592 (601)
Q Consensus 562 ~~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~ 592 (601)
++. .|+.+..- -+.++-..|...+|.+.+
T Consensus 864 ~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 864 VNI--APEAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Hhh--CCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 984 45443321 122344456666665554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=8.1e-27 Score=262.91 Aligned_cols=520 Identities=13% Similarity=0.059 Sum_probs=411.9
Q ss_pred CCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHH
Q 007510 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (601)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (601)
|.+..........+.+.|++++|.+.|+++.+.. |.+...+..+...+...|++++|.+.|+.+. +.+...+..+
T Consensus 360 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 437 (899)
T TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLL 437 (899)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHH
Confidence 3333333334455668999999999999999876 5666667777777788899999999998754 3345566778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (601)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (601)
+..+.+.|++++|..+++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 888999999999999999998754 6678899999999999999999999999998764 45677888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007510 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (601)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (601)
++|.+.|+++...+ +.+..++..+...+.+.|+.++|..+++++... .+.+...+..+...|.+.|++++|..+++
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL---NPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999998764 557788889999999999999999999998764 24456677889999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (601)
.+.+.. +.+..+|..+...|...|++++|...|+++.+.... +...+..+...+.+.|++++|...++++.+.. +.+
T Consensus 592 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 668 (899)
T TIGR02917 592 EAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDN 668 (899)
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence 998765 677889999999999999999999999999886543 66788889999999999999999999998875 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (601)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (601)
..++..+...+...|++++|.++++.+.+.. +++...+..+...+.+.|++++|.+.|+++... .|+..++..+..+
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 745 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHH
Confidence 8899999999999999999999999998775 567788888999999999999999999999884 5666888889999
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCccchhhHHH-----------H
Q 007510 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTS-----------L 485 (601)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----------~ 485 (601)
+.+.|++++|.+.++++.+.. ..+...+..+...|.+ ++++|....+.+....+ .+...+.. .
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~ 821 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP---DNAVVLNNLAWLYLELKDPR 821 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCcHH
Confidence 999999999999999998753 3356677777777764 67777777665544433 23333322 3
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHh--ccCCCCchhHHhhHHHhhCCCc-cccccccccccccccCCchhHHHHHHHHHH
Q 007510 486 ALMVYREAIVAGTIPTVEVVSKVLG--CLQLPYNADIRERLVENLGVSA-DALKRSNLCSLIDGFGEYDPRAFSLLEEAA 562 (601)
Q Consensus 486 a~~~~~~m~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~a~~~~~~~~ 562 (601)
|+..+++.++. .|+...+...+| +...+.-.+....+.+.....| ++..+..++......|+ .++|..++++|+
T Consensus 822 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 898 (899)
T TIGR02917 822 ALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR-KAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHh
Confidence 67777776653 455544433333 3445555555555666666666 45555554444455566 467989998875
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=4.1e-18 Score=193.29 Aligned_cols=286 Identities=16% Similarity=0.137 Sum_probs=185.4
Q ss_pred CCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------HHHHHHHhhhHHHHHHHHHH
Q 007510 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------ARFFNVCKSQKAIKEAFRFF 84 (601)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----------------~~l~~~~~~~~~~~~A~~~~ 84 (601)
.|++..........+.+.|+.++|.+.+++..+.. |.+.... ...++.+...|++++|++.|
T Consensus 58 ~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 58 DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 46666666666666678888888888888888877 4443322 12233456668888888888
Q ss_pred hhCCC---CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--
Q 007510 85 KLVPN---PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-- 158 (601)
Q Consensus 85 ~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-- 158 (601)
++... ++.. ............|+.++|...++.+.+.. +.+...+..+...+...|+.++|++.++++.+...
T Consensus 136 ~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 136 DKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 87542 2221 11111122234588888888888888764 44667777888888888888888888887754310
Q ss_pred ----------------C--------------CCHHHH---------------------HHHHHHHHhcCCHHHHHHHHHH
Q 007510 159 ----------------E--------------PNVHTY---------------------GALIDGCAKAGQVAKAFGAYGI 187 (601)
Q Consensus 159 ----------------~--------------~~~~~~---------------------~~li~~~~~~g~~~~A~~~~~~ 187 (601)
. |+.... ..+...+...|++++|+..|++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 000000 0113345667888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHH------------HHHHHHHHhcCChhHHHH
Q 007510 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------------GALMKACANAGQVDRARE 255 (601)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~ll~~~~~~g~~~~a~~ 255 (601)
..... +.+...+..+...+.+.|++++|+..|++....... .+....+ ......+.+.|++++|..
T Consensus 295 aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 295 AVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 87763 346777778888888888888888888887754211 1111111 122345667888888888
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
.|+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l 428 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 888888775 556677778888888888888888888888775432 33344433333
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.6e-20 Score=189.92 Aligned_cols=301 Identities=13% Similarity=0.098 Sum_probs=157.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~ 177 (601)
.+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455667777777777777653 33455666677777777777777777777665421111 2345666666677777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHhcCChhHHH
Q 007510 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (601)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~ 254 (601)
+++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.... +..+. ...+..+...+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG-GDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 777777777766542 3445566666666666677777766666665431 11111 112233444444555555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (601)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (601)
..|+++.+.. +.+...+..+...+.+.|++++|.++|+++...+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--------------------------------- 246 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE--------------------------------- 246 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh---------------------------------
Confidence 5555554433 223344444445555555555555555554443221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (601)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (601)
....+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..
T Consensus 247 --~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 247 --YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred --hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 11233444445555555555555555554443 233333444555555555555555555554442 355555554
Q ss_pred HHHHHhh---cCCHHHHHHHHHHHHHCCCCCCH
Q 007510 415 LLVACER---KDDVEVGLMLLSQAKEDGVIPNL 444 (601)
Q Consensus 415 ll~a~~~---~g~~~~a~~~~~~~~~~g~~p~~ 444 (601)
++..+.. .|+.+++..+++++.+.++.|++
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 4444332 33455555555555544443333
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3.1e-20 Score=187.79 Aligned_cols=276 Identities=18% Similarity=0.157 Sum_probs=198.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCC--CHHHHHHHHHHHHhcCC
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAGQ 249 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~ 249 (601)
+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+.... ...+ ....+..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCC
Confidence 445555666666666665542 2233455555556666666666666666555421 1111 12345666667777777
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 007510 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFE 325 (601)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~ 325 (601)
+++|..+|+.+.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777776653 445667777777777778888888887777765543322 234566677788899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007510 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (601)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (601)
.++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 999888764 34566788888999999999999999999987532222467889999999999999999999999884
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (601)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (601)
.|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhh
Confidence 677777888999999999999999999998874 689989988887654
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=3e-18 Score=194.33 Aligned_cols=388 Identities=11% Similarity=0.040 Sum_probs=285.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CC---HHHHHH-----------
Q 007510 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PT---LSTFNM----------- 97 (601)
Q Consensus 34 ~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~----------- 97 (601)
.+...|++++|+..|++..+.. |.+...+..+...+...|++++|+..|++... |+ ...|..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3457889999999999888876 66777777788888888889999988876531 21 112222
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (601)
Q Consensus 98 -li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (601)
....+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 2345677889999999998888764 4566777788888889999999999999888764 345666777777764 45
Q ss_pred CHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007510 177 QVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (601)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (601)
+.++|+..++.+...... .....+..+...+...|++++|.+.|++..... +.+...+..+...|.+.|
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence 778888888765432100 011234456667788899999999999887641 234556677888889999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCC
Q 007510 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHAGK 319 (601)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g~ 319 (601)
++++|...++++.+.. +.++..+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999888764 4566666666667778899999998888765433222221 12344566778899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007510 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (601)
.++|..+++. .+.+...+..+...|.+.|++++|+..|++..+.. +.+...+..++..|...|++++|++.++.
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999988872 24566677888889999999999999999988764 44678888899999999999999999998
Q ss_pred HHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 400 MKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 400 m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
..+. .|+ ..++..+..++...|++++|.++++++.+.
T Consensus 663 ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 663 LPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred Hhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 7763 444 455667778888899999999999988764
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=2e-19 Score=173.38 Aligned_cols=392 Identities=13% Similarity=0.085 Sum_probs=234.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHh---hCCCCCHHHHHHHHHHHHhc
Q 007510 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMSVCASS 105 (601)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~ 105 (601)
......+.+.|++.+|.+.-..+-.++ |.+......+...+.+..+.+.....-. +..+.-..+|..+...+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 334456668899999888766655554 2232222222222222222332221111 11223445666677777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 007510 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT-YGALIDGCAKAGQVAKAFGA 184 (601)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~ 184 (601)
|++++|+..++.+++.. +.....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+-..|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 77777777777777653 334566777777777777777777777766654 344332 33344444456777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007510 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKY 263 (601)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (601)
|.+..+.. +-=.+.|+.|.-.+-..|+...|++.|++.... .|+ ...|-.|...|...+.+++|...+.+....
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 76666542 122445666666666677777777777666542 333 235566666666666677777666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007510 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (601)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (601)
. +....++..|...|...|..+-|+..+++.++..+. =...|+.+..++-..|++.+|...+.+..... +-.....+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 3 334556666666666777777777777766654322 23456666666666677777777776666553 33355666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhh
Q 007510 344 SLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACER 421 (601)
Q Consensus 344 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 421 (601)
.|...|...|.+++|..+|....+. .|. ....+.|...|-+.|++++|+..+++.++ +.|+ ...|+.+...|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 6667777777777777777666653 333 34566666667777777777777776665 5666 3456666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 007510 422 KDDVEVGLMLLSQAKE 437 (601)
Q Consensus 422 ~g~~~~a~~~~~~~~~ 437 (601)
.|+++.|.+.+.+.+.
T Consensus 435 ~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ 450 (966)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 7777777777666665
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=9.1e-18 Score=178.14 Aligned_cols=328 Identities=12% Similarity=0.047 Sum_probs=156.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (601)
++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|...|+++.... +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3344455555555555555555443 2223333333344444555555555555555442 2234445555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007510 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (601)
Q Consensus 178 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (601)
+++|...|+++.... +.+...+..+...+...|+.++|...+..+.... +.+...+..+ ..+.+.|++++|...+
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 555555555555431 2233444455555555555555555555443321 1111122112 2244555555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHC
Q 007510 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEAKNQ 333 (601)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~ 333 (601)
+.+.+....++...+..+...+.+.|++++|+..+++....... +...+..+...+...|++++ |...++++.+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 55544332222233333344455555555555555555544322 34444455555555555553 45555555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH-H
Q 007510 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-Y 412 (601)
Q Consensus 334 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~ 412 (601)
. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|+..|+++.+. .|+... +
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH
Confidence 3 2344455555555555555555555555555432 223344444555555555555555555555542 333322 2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 413 SILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 413 ~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..+..++...|+.++|...|++..+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2233445555555555555555554
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=4.4e-19 Score=170.97 Aligned_cols=387 Identities=15% Similarity=0.162 Sum_probs=320.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 113 (601)
+..+++...+--....+.. |........+..++...|++.+|+++++.+. +..+..|..+..++...|+.+.|.+
T Consensus 94 q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred cccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHH
Confidence 4445555444433444443 5666777788899999999999999998764 4567789999999999999999999
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 114 VLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 114 ~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (601)
.|....+. .|+.. ..+.+...+-..|++++|..-|.+.++. .|. ..+|+.|...+...|+...|++-|++....
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 99998875 45544 3445556666789999999999888876 344 568999999999999999999999999876
Q ss_pred CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 007510 192 NVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (601)
Q Consensus 192 g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (601)
.|+ ...|-.|...|...+.+++|...+.+... ..|+ ..++..+...|-..|.++.|+..+++..+.. +.-+
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~----lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~ 320 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN----LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFP 320 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh----cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCch
Confidence 444 56788899999999999999999988875 3555 5677788888999999999999999999875 4457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (601)
..|+.|..++...|++.+|...+.+.+..... -....+.|...|...|.+++|..+|....... +--....+.|...|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIY 398 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHH
Confidence 89999999999999999999999998887543 45678889999999999999999999988764 33356788999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHH
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 427 (601)
-+.|++++|..-|++..+. .|+ ..+|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|...|-.+|++.+
T Consensus 399 kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999998874 676 47899999999999999999999999987 6676 4678999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH
Q 007510 428 GLMLLSQAKEDGVIPNL 444 (601)
Q Consensus 428 a~~~~~~~~~~g~~p~~ 444 (601)
|++-+++.++ ++||.
T Consensus 475 AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 475 AIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHHHc--cCCCC
Confidence 9999999998 55553
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.5e-17 Score=176.39 Aligned_cols=321 Identities=9% Similarity=0.010 Sum_probs=179.2
Q ss_pred HhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 007510 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (601)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 147 (601)
+.+.|++++|+.++..+. +.+...+..++......|++++|...++.+.+.. +.+...+..+...+...|++++|.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 334456666666655432 2333444444455555666666666666666553 334555666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCC
Q 007510 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (601)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 227 (601)
..+++..+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+....
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666666542 3345556666666666666666666666555442 1122222222 23555666666666666654321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCC
Q 007510 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPD 303 (601)
Q Consensus 228 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~ 303 (601)
..++......+...+.+.|++++|...++...+.+ +.+...+..+...+...|++++ |...|++..+..+. +
T Consensus 208 --~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~ 283 (656)
T PRK15174 208 --ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-N 283 (656)
T ss_pred --CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-C
Confidence 01222233334455566666666666666666554 4455566666666666666654 56666666654332 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 007510 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALIT 382 (601)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~ 382 (601)
...+..+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+. .|+. ..+..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 4556666666666666666666666666553 334445555666666666666666666666553 2332 22333445
Q ss_pred HHHcCCChhHHHHHHHHHHh
Q 007510 383 ALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~ 402 (601)
++...|+.++|...|++..+
T Consensus 361 al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 56666666666666666554
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=2.4e-17 Score=178.81 Aligned_cols=404 Identities=10% Similarity=0.011 Sum_probs=304.6
Q ss_pred hHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHH
Q 007510 28 QLHSYNRL-IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCA 103 (601)
Q Consensus 28 ~~~~~~~l-~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~ 103 (601)
.+.-|..+ ...|+.++|++++.+..... |.....+..+...+...|++++|.++|++. .+.+...+..+...+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444444 48999999999999998744 556666777888888999999999999984 4566778888889999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (601)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (601)
..|++++|+..++...+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..+.|+.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999874 45666 8889999999999999999999999874 4466777788888999999999999
Q ss_pred HHHHHHhCCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHhhhCCCCCCCCHH-HH----HHHHHHH
Q 007510 184 AYGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TI----GALMKAC 244 (601)
Q Consensus 184 ~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~~~~~~~~~~-~~----~~ll~~~ 244 (601)
.++.... .|+. .....++.... ..+++ ++|++.++.+.... ...|+.. .+ ...+..+
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~L 247 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGAL 247 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHHH
Confidence 9987664 2221 11222222222 22234 77888888887531 1223221 11 1113345
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHH
Q 007510 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVE 321 (601)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~ 321 (601)
...|++++|+..|+.+.+.+.+........+...|...|++++|+..|+++.+..... .......+..++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 6779999999999999887632112233335778999999999999999987654321 1345666677889999999
Q ss_pred HHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007510 322 AAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (601)
Q Consensus 322 ~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (601)
+|...++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 99999999887631 122 2345667788999999999999999998764 55678899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 388 DQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (601)
Q Consensus 388 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (601)
|++++|++.+++..+ +.|+ ...+......+...|++++|..+++++++. .|+..
T Consensus 407 g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 407 GWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred CCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 999999999999988 4576 556667777899999999999999999983 45543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=8.4e-17 Score=171.42 Aligned_cols=388 Identities=12% Similarity=0.048 Sum_probs=267.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 109 (601)
+.+.+.|++++|+..|++.++.. |. ..++..+...+...|++++|++.+.... +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 44558899999999999988765 43 4566667777888899999999988653 456678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-----------------------
Q 007510 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG----------------------- 166 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~----------------------- 166 (601)
+|+.-|......+...+.. ...++..+... .+........+.. +++...+.
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETK-PENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcC-CCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9998887665443111211 11111111110 1111111111110 00000000
Q ss_pred -------HHHHHH------HhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC
Q 007510 167 -------ALIDGC------AKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (601)
Q Consensus 167 -------~li~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 231 (601)
.++..+ ...+++++|.+.|++....+ ..| +...|+.+...+...|++++|+..++..... .
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~ 361 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----D 361 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Confidence 001110 12367888888888888654 223 3456777777888889999999999888753 3
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 232 PD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (601)
Q Consensus 232 ~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (601)
|+ ...|..+...+...|++++|...|+...+.+ +.+..+|..+...+...|++++|...|++..+.... +...+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHH
Confidence 44 5567777888888899999999998888765 566788888888899999999999999988877543 56677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHH
Q 007510 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITAL 384 (601)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~ 384 (601)
...+.+.|++++|+..+++..+.. +.+...++.+...+...|++++|.+.|++..+.....+. ..++.....+
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 888888899999999998887754 456778888888899999999999999888764311111 1122222334
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 385 CDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
...|++++|.+++++..+. .|+ ...+..+...+...|++++|...|++..+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4468899999999887764 444 456788888889999999999999888763
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=5.7e-16 Score=165.10 Aligned_cols=333 Identities=12% Similarity=0.010 Sum_probs=194.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (601)
+......+.+.|++++|+..|+..++. .|+...|..+..+|.+.|++++|++.++..++.. +.+..+|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334555667777777777777777654 4566677777777777777777777777777653 3355677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-----------------------------HHHHH----------------------
Q 007510 175 AGQVAKAFGAYGIMRSKNVKPDRV-----------------------------VFNAL---------------------- 203 (601)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~-----------------------------~~~~l---------------------- 203 (601)
.|++++|+..|......+-..+.. .+..+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 777777766554433221000000 00000
Q ss_pred --------HHH------HhccCCHHHHHHHHHHhhhCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 007510 204 --------ITA------CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (601)
Q Consensus 204 --------i~~------~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 268 (601)
+.. ....+++++|.+.|+...... ...| ....+..+...+...|++++|...|++..+.. +..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 000 001235666666666665431 1122 23445555666666677777777776666553 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (601)
Q Consensus 269 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (601)
...|..+...+...|++++|...|++..+.... +...+..+...+...|++++|...|++..+.. +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 556666666666677777777777666655432 45566666666666777777777777666654 3345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HH-------HHHHHHHHh
Q 007510 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-IT-------YSILLVACE 420 (601)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t-------~~~ll~a~~ 420 (601)
+.+.|++++|...|++..+.. +.+...|+.+...+...|++++|+..|++..+. .|+. .+ +...+..+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHH
Confidence 667777777777777665532 234556666666666777777777777666552 2221 11 111111223
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007510 421 RKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 421 ~~g~~~~a~~~~~~~~~ 437 (601)
..|++++|.+++++..+
T Consensus 520 ~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 520 WKQDFIEAENLCEKALI 536 (615)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 35667777777766655
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1e-15 Score=141.79 Aligned_cols=408 Identities=16% Similarity=0.189 Sum_probs=291.6
Q ss_pred CCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh----------------------------
Q 007510 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---------------------------- 72 (601)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~---------------------------- 72 (601)
.|..+. +-...-.+|.+|.+.++.-+++.|.+.|. +-+..+...++++..
T Consensus 112 ~~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~s 189 (625)
T KOG4422|consen 112 DPLQVE-TENNLLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSS 189 (625)
T ss_pred Cchhhc-chhHHHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccc
Confidence 344444 44455567799999999999999999986 334444444443321
Q ss_pred -hhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007510 73 -SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (601)
Q Consensus 73 -~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (601)
+.|++ |. ++-+..+....++..+|.++|+-...+.|.+++++-.....+.+..+||.+|.+-+-. ...++..
T Consensus 190 WK~G~v--Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~ 262 (625)
T KOG4422|consen 190 WKSGAV--AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVA 262 (625)
T ss_pred cccccH--HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHH
Confidence 11222 22 4455556778899999999999999999999999998887899999999999875433 2378999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHhhhC
Q 007510 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKA----FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR-AFDVLAEMNAE 226 (601)
Q Consensus 152 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~ 226 (601)
+|....+.||..|+|+++++.++.|+++.| .+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++...
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 999999999999999999999999987754 5677889999999999999999999998887644 44444444321
Q ss_pred --CCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 227 --VHPVD----PDHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQTGDWEFACSVYD 293 (601)
Q Consensus 227 --~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~ 293 (601)
+..+. .|...|...+..|.+..+.+.|.++........ +.|+ ..-|..+....|+....+.-...|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 346677888899999999999999887765432 2222 2235677888899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHH
Q 007510 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NW--------Q-----KAL 359 (601)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~-----~A~ 359 (601)
.|.-.-.-|+..+...++++..-.|.++-..+++..++..|...+.....-++..+++.+ .. . -|.
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 999888888999999999999999999999999998888775544444444444444433 11 0 011
Q ss_pred HHHH-------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHhhcCCHHHH
Q 007510 360 ELYE-------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL----CPNTITYSILLVACERKDDVEVG 428 (601)
Q Consensus 360 ~~~~-------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~a~~~~g~~~~a 428 (601)
.+++ ++.+ ........+...-.+.+.|+.++|.++|....+++- .|......-++++..+..+...|
T Consensus 503 d~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 1111 1222 233445566677777788888888888887755442 23333444566666777777777
Q ss_pred HHHHHHHHHCC
Q 007510 429 LMLLSQAKEDG 439 (601)
Q Consensus 429 ~~~~~~~~~~g 439 (601)
..+++.|...+
T Consensus 581 ~~~lQ~a~~~n 591 (625)
T KOG4422|consen 581 IEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHcC
Confidence 77777776544
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=3.9e-15 Score=158.44 Aligned_cols=444 Identities=13% Similarity=0.095 Sum_probs=311.0
Q ss_pred CCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHH-HHHH
Q 007510 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS-TFNM 97 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 97 (601)
-+|......-...-...++|+++.|++.|++..+.. |.+. .++ -++.++...|+.++|+..+++...|+.. .+..
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 345444444444444559999999999999999887 4442 233 5555666679999999999987765433 3333
Q ss_pred H--HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007510 98 L--MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (601)
Q Consensus 98 l--i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (601)
+ ...+...|++++|+++|+.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 3 457888899999999999999875 446777888889999999999999999999876 56666665554455456
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHH------HHHHHHH---H-
Q 007510 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC---A- 245 (601)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------~~ll~~~---~- 245 (601)
++..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-.. -+.+....+ ..+++.- .
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~---~f~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN---LVSAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc---ccCHHHHHHHHHHHHHHHHhhcccccc
Confidence 66767999999999884 44677778888999999999999888765331 122221111 1111100 0
Q ss_pred -hcCC---hhHHHHHHHHHHhcC--CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 246 -NAGQ---VDRAREVYKMIHKYN--IKGTPE----VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (601)
Q Consensus 246 -~~g~---~~~a~~~~~~~~~~~--~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (601)
...+ .+.|..-++.+...- .++... +..-.+-++...|++.++++.|+.+...+......+-..+.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 1122 345666666655521 122212 223456677888999999999999998886545568888999999
Q ss_pred hcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCH-HH
Q 007510 316 HAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------------LKPTV-ST 376 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~~~~-~~ 376 (601)
..+++++|+.++..+.... .+++......|.-+|...+++++|..+++.+.+.. ..||- ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 9999999999999987643 23345556788899999999999999999998631 12232 23
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 007510 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS 455 (601)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~ 455 (601)
+..++..+...|+..+|.+.++++... -+-|......+...+...|.+.+|++.++.... +.|+.. +.........
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAM 495 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHH
Confidence 445677788899999999999999775 355778888889999999999999999977665 355532 2222222222
Q ss_pred --hhHHHHHHhhhhhhhccCCCc
Q 007510 456 --RRYEKARTLNEHVLSFNSGRP 476 (601)
Q Consensus 456 --~~~~~a~~~~~~~~~~~~~~~ 476 (601)
..+.+|..+.+.+....|..+
T Consensus 496 ~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 496 ALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred hhhhHHHHHHHHHHHHhhCCCch
Confidence 257777777766666655544
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.1e-15 Score=165.85 Aligned_cols=395 Identities=12% Similarity=0.080 Sum_probs=286.0
Q ss_pred HHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 007510 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (601)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 143 (601)
...+....|+.++|++++.... +.+...+..+...+...|++++|..+++...+.. +.+...+..+..++...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 3445566788999999998754 3455568999999999999999999999998764 55677788888999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
++|...+++..+.. +.+.. +..+...+...|+.++|+..++++.+.. +.+...+..+..++...+..++|++.++..
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998873 44566 8889999999999999999999999874 345566667788888899999999999876
Q ss_pred hhCCCCCCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHHhc-CCCCCH-HHH----HHHHHHHHhcC
Q 007510 224 NAEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCSQTG 283 (601)
Q Consensus 224 ~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~-~~~----~~li~~~~~~g 283 (601)
.. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+. ..+ ...+..+...|
T Consensus 177 ~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 177 NL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred CC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 53 2331 11122222222 12233 6788888888754 112221 111 11133456779
Q ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 007510 284 DWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKAL 359 (601)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 359 (601)
++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+++.+..... .......+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987642 432 22335678999999999999999987654211 1345666777889999999999
Q ss_pred HHHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 007510 360 ELYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (601)
Q Consensus 360 ~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 425 (601)
.+++.+.+... .|+ ...+..+...+...|+.++|+++++++... .+-+...+..+...+...|++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCH
Confidence 99999986421 123 234566778889999999999999999875 344567788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--hhHHHHHHhhhhhhhccCC
Q 007510 426 EVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEKARTLNEHVLSFNSG 474 (601)
Q Consensus 426 ~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~--~~~~~a~~~~~~~~~~~~~ 474 (601)
++|++.++++.+ ..|+.. .+-.....+. .++++|..+.+.+....|.
T Consensus 410 ~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 410 RAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 999999999988 445532 2222222222 2677777766655544443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.79 E-value=7.4e-14 Score=151.92 Aligned_cols=510 Identities=11% Similarity=0.004 Sum_probs=284.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CC-CHHHHHHHHHHHHhcCChHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCASSKDSEGAFQ 113 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~ 113 (601)
..|++++|+..|++..+.. |.+..++..+.+++...|+.++|+..+++.. +| |...+..+ ..+ +++.+|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHH
Confidence 3466666666666666655 5555555666666666666666666665543 12 22222222 111 45555555
Q ss_pred HHHHHHHcC--------------------------------------CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHH
Q 007510 114 VLRLVQEAG--------------------------------------LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMV 154 (601)
Q Consensus 114 ~~~~m~~~g--------------------------------------~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~ 154 (601)
+++++.+.. ..|+..+.... ...|.+.|++++|++++.++.
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 555554432 12222222222 556666666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC
Q 007510 155 NAGIEPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (601)
Q Consensus 155 ~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 233 (601)
+.+ +.+..-...|...|.. .++ +.+..+++. .++-+...+..+...|.+.|+.++|.+++.++.... .-.|+
T Consensus 210 k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~-~~~~~ 282 (987)
T PRK09782 210 QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF-TTDAQ 282 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc-cCCCc
Confidence 664 3344445555556655 244 555555442 223466777788888888999999998888865421 11122
Q ss_pred HHHH------------------------------HHHHHHHHhcCChhHHHHHHH-------------------------
Q 007510 234 HITI------------------------------GALMKACANAGQVDRAREVYK------------------------- 258 (601)
Q Consensus 234 ~~~~------------------------------~~ll~~~~~~g~~~~a~~~~~------------------------- 258 (601)
..++ ..++..+.+.++++.+.++..
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 2111 122444555555555544422
Q ss_pred ----HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH---
Q 007510 259 ----MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-G-VIPDEVFLSALIDFAGHAGK---VEAAFEI--- 326 (601)
Q Consensus 259 ----~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~li~~~~~~g~---~~~a~~~--- 326 (601)
.+.+.. +.+......+.-...+.|+.++|.++|+..... + ..++......++..|.+.+. ...+..+
T Consensus 363 ~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 363 RLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 111110 123333333344455678888888888877652 1 22234444567777776655 2333222
Q ss_pred -------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 327 -------------------LQEAKNQ-GI-SV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (601)
Q Consensus 327 -------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (601)
....... +. ++ +...|..+..++.. ++.++|...+.+.... .|+......+...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHH
Confidence 1111111 11 33 56677777777776 7888888877777654 3664443344455
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH--hhHHH
Q 007510 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCS--RRYEK 460 (601)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~-~~~~li~~~~--~~~~~ 460 (601)
+.+.|++++|...|+++.. .+|+...+..+..++.+.|++++|...+++..+.. |+.. .+..+...+. .++++
T Consensus 519 l~~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 519 AYQVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHH
Confidence 5688999999999988765 35555666677778888899999999998888753 3332 2222222221 24666
Q ss_pred HHHhhhhhhhccCCCccchhhHHH------------HHHHHHHHHHHcCCCCcHHHHHHHHh--ccCCCCchhHHhhHHH
Q 007510 461 ARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVLG--CLQLPYNADIRERLVE 526 (601)
Q Consensus 461 a~~~~~~~~~~~~~~~~~~~~~~~------------~a~~~~~~m~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~ 526 (601)
|....+.....++. ...|.. .|...|++.+. ..|+.......+| +...+...+....+.+
T Consensus 595 Al~~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 595 ALNDLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66665544444442 233333 25666666544 4577765555554 3344555555556666
Q ss_pred hhCCCccc-cccccccccccccCCchhHHHHHHHHHHhCCCCCccccCCCC
Q 007510 527 NLGVSADA-LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIP 576 (601)
Q Consensus 527 ~~~~~~~~-~~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~~ 576 (601)
...+.|+. ..+.+++.+....|+ .++|...++++.+ +.|+..-..+.
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd-~~eA~~~l~~Al~--l~P~~a~i~~~ 716 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDD-MAATQHYARLVID--DIDNQALITPL 716 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh--cCCCCchhhhh
Confidence 66777753 333344444445565 4678888888887 67776554443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.7e-12 Score=141.37 Aligned_cols=432 Identities=14% Similarity=0.063 Sum_probs=282.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh-hHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 007510 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (601)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 106 (601)
.......+.+.|++++|+.++.++.+.+ +.+......+...+.. .++ ++|..+++.....++..+..+...+.+.|
T Consensus 185 ~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 185 RTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCC
Confidence 3333566778999999999999999998 4555555555556655 355 88888877655678899999999999999
Q ss_pred ChHHHHHHHHHHHHcCCC-CCHHHHH------------------------------HHHHHHHhcCChhHHHHHHH----
Q 007510 107 DSEGAFQVLRLVQEAGLK-ADCKLYT------------------------------TLITTCAKSGKVDAMFEVFH---- 151 (601)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~-~~~~~~~------------------------------~li~~~~~~g~~~~a~~~~~---- 151 (601)
+.++|.++++.+...-.. |+..+|. .++..+.+.++++.+.++.+
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 999999999887643211 2222221 12444555555554444421
Q ss_pred -------------------------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHH
Q 007510 152 -------------------------EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N-VKPDRVVFNALI 204 (601)
Q Consensus 152 -------------------------~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~~~~~li 204 (601)
.|.+.. +-+......+.-...+.|+.++|.++|+..... + -.++.....-++
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 111110 112333333333445678888888888887652 1 123344444666
Q ss_pred HHHhccCC---HHHHHHH----------------------HHHhhhCCCCCCC--CHHHHHHHHHHHHhcCChhHHHHHH
Q 007510 205 TACGQSGA---VDRAFDV----------------------LAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVY 257 (601)
Q Consensus 205 ~~~~~~g~---~~~A~~~----------------------~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (601)
..|.+.+. ..++..+ .+.........++ +...|..+..++.. ++.++|...+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 77766655 2223222 1111111111123 45666767766666 7888899888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007510 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (601)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (601)
....... |+......+...+...|++++|...|+++... .|+...+..+..++.+.|++++|...++...+.. +.
T Consensus 500 ~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 7776653 44333444455556889999999999987654 3344456666777888999999999999888765 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 007510 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILL 416 (601)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 416 (601)
+...+..+.....+.|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++..+. .|+ ...+..+.
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG 650 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALG 650 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3334444444455669999999999998875 467888888899999999999999999998874 455 55677777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCC
Q 007510 417 VACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGR 475 (601)
Q Consensus 417 ~a~~~~g~~~~a~~~~~~~~~~g~~p~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~ 475 (601)
.++...|++++|+..+++..+. .|+ ...+..+-.++.. ++++|....+.....++..
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 7888999999999999998874 343 3344444444433 5667766655555555543
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=4.6e-13 Score=142.83 Aligned_cols=415 Identities=10% Similarity=0.058 Sum_probs=289.2
Q ss_pred HHhhhHHHHHHHHHHhhCCC--CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 007510 70 VCKSQKAIKEAFRFFKLVPN--PTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (601)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 146 (601)
...+.|+++.|+..|.+... |+. .....++..+...|+.++|+..+++..... +........+...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34567889999999988753 332 123378888889999999999999988211 22344444446688889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhC
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 226 (601)
.++|+++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++...
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 99999999875 445777888889999999999999999999876 566666644544554566676799999999875
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH------HHHHHHH-----HhcCCH---HHHHHHH
Q 007510 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY------TIAINCC-----SQTGDW---EFACSVY 292 (601)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~li~~~-----~~~g~~---~~a~~~~ 292 (601)
.+.+...+..+..+..+.|-...|.++...-+..- .+....+ ..++..- ....++ +.|+.-+
T Consensus 199 ---~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 199 ---APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 23356677888888999999999988776544321 1111111 1111110 012233 3445555
Q ss_pred HHHHHC-CCCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 293 DDMTKK-GVIPDE-VF----LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 293 ~~m~~~-~~~p~~-~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
+.+... +..|.. .. ..-.+-++...|+..++++.++.+...+.+....+-.++.++|...+++++|..+|+.+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 555442 222322 12 123334778899999999999999998876667788999999999999999999999987
Q ss_pred hCC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-------------CCCCHH-HHHHHHHHHhhcCCHHH
Q 007510 367 SIK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-------------LCPNTI-TYSILLVACERKDDVEV 427 (601)
Q Consensus 367 ~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~-t~~~ll~a~~~~g~~~~ 427 (601)
... ..++......|..+|...+++++|..+++++.+.- ..||-. .+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 532 13345556789999999999999999999998731 112323 34556777899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhccCCCcc--chhhHHHHHHHHHHHH
Q 007510 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ--IENKWTSLALMVYREA 493 (601)
Q Consensus 428 a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~m 493 (601)
|.+.++++..... -|......+-+.+.. ...+|.++.+.....++.... ....++.+++.-|+++
T Consensus 435 Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 435 AQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 9999999987532 255566666666654 688888888777666655322 2334555555445544
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2e-13 Score=139.39 Aligned_cols=414 Identities=13% Similarity=0.105 Sum_probs=255.3
Q ss_pred CCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCC--HHH
Q 007510 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT--LST 94 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~--~~~ 94 (601)
.+++++..-.+..|.+.--|++..++++...+....... .-..-+..+++.+-..|++++|..+|-+.. .++ +..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 467777788888888889999999999999888765211 111224556777778899999999987643 233 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 170 (601)
+.-+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..+..+..+.- +.|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 4556788999999999999999998864 556667777777777665 4566777777766554 557778888777
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCC-CCCCCH------HHHHH
Q 007510 171 GCAKAGQVAKAFGAYGIMR----SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH------ITIGA 239 (601)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~------~~~~~ 239 (601)
.|-...-+ .++.+|.... ..+.++.....|.+...+...|++++|...|........ ...+|. .+--.
T Consensus 423 l~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 77654443 3477666543 445567788888888888889999999888887765310 112222 11112
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC---------------------------------CCCHHHHHHHHHHHHhcCCHH
Q 007510 240 LMKACANAGQVDRAREVYKMIHKYNI---------------------------------KGTPEVYTIAINCCSQTGDWE 286 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~li~~~~~~g~~~ 286 (601)
+...+-..++.+.|.+.|..+.+... ..++.+++.+...+.+...+.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 33333344455555555555544320 333444444444555555555
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 287 FACSVYDDMTKK-GVIPDEVFLSALIDFAGH------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (601)
Q Consensus 287 ~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (601)
.|.+-|....+. ...+|.++.-+|.+.|.+ .+..+.|+++|.++++.. +-|...-|.+.-.++..|
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence 554444433322 112354554455444332 123456666666666654 445666666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 007510 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (601)
++..|..+|.++.+... .+..+|-.+.++|...|++..|+++|+... +..-.-+......|.+++...|.+.+|.+.+
T Consensus 661 ~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66666666666665432 233456666666666666666666666633 3222334555666666666666666666666
Q ss_pred HHHHHC
Q 007510 433 SQAKED 438 (601)
Q Consensus 433 ~~~~~~ 438 (601)
......
T Consensus 740 l~a~~~ 745 (1018)
T KOG2002|consen 740 LKARHL 745 (1018)
T ss_pred HHHHHh
Confidence 665553
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.2e-13 Score=139.07 Aligned_cols=277 Identities=13% Similarity=0.089 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 007510 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---GIEPNVH------TYGALIDGCAKAGQVAKAFGAYGIMRSKNVK 194 (601)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 194 (601)
.+.....|.+...+...|+++.|...|...... ...++.. +--.+...+-..++.+.|.+.|..+... .
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--h 526 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--H 526 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--C
Confidence 344455555555555555555555555554432 1112221 1112333333444555555555555444 2
Q ss_pred CCHHHH-HHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHH
Q 007510 195 PDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPEVY 272 (601)
Q Consensus 195 p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~ 272 (601)
|+-+.. --+.-..-..+...+|...+...... ...+...++.+...+.+...+..|.+-|..+.+.- ..+|+.+.
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~---d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI---DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc---ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 332221 11111111224555666666665542 12333355556667777777777777776665542 23566777
Q ss_pred HHHHHHHHhc------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 273 TIAINCCSQT------------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340 (601)
Q Consensus 273 ~~li~~~~~~------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 340 (601)
-+|.+.|.+. +..++|+++|.+.++..+. |...-+-+.-.++..|++.+|..+|.++.+.. .-+..
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCc
Confidence 7777766532 4578999999999988765 77888888889999999999999999998875 33567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007510 341 SYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (601)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (601)
+|-.+.++|..+|++..|+++|+...+. ....++.....|..++.+.|.+.+|.+.+...... .|..
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~ 749 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSN 749 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCcc
Confidence 8889999999999999999999987653 33456788899999999999999999999888774 4543
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=5.1e-11 Score=121.36 Aligned_cols=370 Identities=14% Similarity=0.141 Sum_probs=278.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCCCHHHHHHHHHHHH
Q 007510 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCA 103 (601)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~ 103 (601)
.-..-.|.+.-.|++++|..++.++++++ |.+...+..++.++-..|+.+++...+-. ..+.|...|-.+-....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34445677777899999999999999998 77888888899999999999999987643 34667889999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHH
Q 007510 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQVA 179 (601)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~ 179 (601)
+.|.+++|.-.|.+.++.. +++...+---...|-+.|+...|..-|.++.....+.|.. .--.++..+...++.+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999886 5565555566778899999999999999999874222222 2233455677788889
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhC-------------------------CCCCCCC
Q 007510 180 KAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPD 233 (601)
Q Consensus 180 ~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------------~~~~~~~ 233 (601)
.|.+.++..... +-..+...++.++..+.+...++.|......+... +.+..++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999999888763 22345566788888888888899888887766541 0112233
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 311 (601)
..++ -++-++.+....+....+.......++ ..+...|.-+..+|.+.|++.+|+++|..+......-+...|-.+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 3331 223344555555666666666666663 3456789999999999999999999999998876655778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHH
Q 007510 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITA 383 (601)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~ 383 (601)
.+|...|..++|.+.|..+.... +.+...-..|...+-+.|+.++|.++++.+.. .+..|+...-......
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998875 55666777888899999999999999998652 2233444444445667
Q ss_pred HHcCCChhHHHHHHHHHH
Q 007510 384 LCDGDQLPKTMEVLSDMK 401 (601)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~ 401 (601)
+.+.|+.++=+.+-..|.
T Consensus 536 l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 778888877555544443
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=1.2e-13 Score=129.20 Aligned_cols=411 Identities=14% Similarity=0.184 Sum_probs=281.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh----CCCCC----HHHHHHHHHHHHhcCCh
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VPNPT----LSTFNMLMSVCASSKDS 108 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~----~~~~~~li~~~~~~g~~ 108 (601)
.+.-..+|+..++-+.+...+|....+...+..++.+.+.+.+|+++|.. +|.-+ +...|.+.-.+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 45667889999999888887777766666777778888899999998864 34322 23455555568899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC------------CCHHHHHHHH-----HH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE------------PNVHTYGALI-----DG 171 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------------~~~~~~~~li-----~~ 171 (601)
+.|..-|+...+. .|+..+--.|+-++...|+-++..+.|.+|+..... |+....+.-| .-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999998876 678776666777777889999999999999864322 2322222222 22
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHHH-------------HH--------HHHHHHhccCCHHHHHHHHHHhhhCCC
Q 007510 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV-------------FN--------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (601)
Q Consensus 172 ~~~~g--~~~~A~~~~~~m~~~g~~p~~~~-------------~~--------~li~~~~~~g~~~~A~~~~~~~~~~~~ 228 (601)
+-+.+ +.++++-.-.++..--+.|+-.. +. .-...+.+.|+++.|.+++.-+.++..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22221 12222222222322222333110 00 112357888999999888877655421
Q ss_pred CCCCCHHHHHHHHH----------------------------------HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 007510 229 PVDPDHITIGALMK----------------------------------ACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (601)
Q Consensus 229 ~~~~~~~~~~~ll~----------------------------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (601)
....-..+-..++. .....|++++|.+.+.+....+..-. .....
T Consensus 451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-ealfn 529 (840)
T KOG2003|consen 451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-EALFN 529 (840)
T ss_pred hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-HHHHH
Confidence 11110000000010 01134788999999988887663222 23333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (601)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (601)
+.-.+-..|+.++|++.|-++...-. .+...+..+...|....+..+|++++.+.... ++.|+.+..-|.+.|-+.|+
T Consensus 530 iglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccc
Confidence 34456778999999999877644322 26677778888898999999999998877654 57789999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-hcCCHHHHHHHHH
Q 007510 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKDDVEVGLMLLS 433 (601)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~ 433 (601)
-.+|.+.+-.--+. ++-|..+...|..-|....-+++|+..|++..- +.|+..-|..++..|. +.|+++.|.++++
T Consensus 608 ksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 608 KSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99998876554332 345778888888889999999999999999765 7899999998887775 5899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh
Q 007510 434 QAKEDGVIPNLVMFKCIIGMCSR 456 (601)
Q Consensus 434 ~~~~~g~~p~~~~~~~li~~~~~ 456 (601)
...+. +.-|......|+..|+.
T Consensus 685 ~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 685 DIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHh-CccchHHHHHHHHHhcc
Confidence 88753 66678888888888764
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=7.2e-12 Score=116.67 Aligned_cols=323 Identities=21% Similarity=0.271 Sum_probs=237.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhHH-HHHHHHHHHCC-----------
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA--KSGKVDAM-FEVFHEMVNAG----------- 157 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~~~~a-~~~~~~m~~~g----------- 157 (601)
+++=|.|+.. ..+|....+.-+|+.|...|++.+...-..|+...+ ...++.-| ++.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4455666654 557889999999999999988877766655554433 11111111 12222222111
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCC
Q 007510 158 --------IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (601)
Q Consensus 158 --------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 229 (601)
.+.+..++.+||.++|+.-..+.|.++|++-.....+.+..+||.+|.+-.-. ...+++.+|... .
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisq--k 268 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQ--K 268 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHh--h
Confidence 25678899999999999999999999999998887789999999999765433 237788899876 6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCC
Q 007510 230 VDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK----KGV 300 (601)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~ 300 (601)
+.||..|+|+++.+.++.|+++.| .+++.+|.+.|+.|+..+|..+|..+++.++..+ +..++.++.. +.+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 899999999999999999987655 5677889999999999999999999999888754 4444444432 222
Q ss_pred C---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007510 301 I---P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG---IISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (601)
Q Consensus 301 ~---p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 369 (601)
+ | |...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2 2 55678888899999999999999887665421 2233 2235667778888889999999999998766
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007510 370 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (601)
Q Consensus 370 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (601)
+-|+..+...++++..-.|+++-.-++|..++..|..-+...-.-++.-+++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~ 480 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLAR 480 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhc
Confidence 7788888888999999999999998999888887644444433333333333
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.1e-11 Score=113.83 Aligned_cols=332 Identities=14% Similarity=0.042 Sum_probs=193.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HH
Q 007510 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH--TY 165 (601)
Q Consensus 88 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~ 165 (601)
.+.|...+-...-.+.+.|....|...|...... . +..|...+....-..+.+.+..+ .. |.+.|.. .=
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~--P~~W~AWleL~~lit~~e~~~~l----~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--Y--PWFWSAWLELSELITDIEILSIL----VV-GLPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--C--CcchHHHHHHHHhhchHHHHHHH----Hh-cCcccchHHHH
Confidence 3455555555555666677777777777666532 1 22233333322222222222221 11 1121111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC-CCHHHHHHHHHHH
Q 007510 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-PDHITIGALMKAC 244 (601)
Q Consensus 166 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~ll~~~ 244 (601)
--+..+|-...+.+++++-.+...+.|++-+...-+....+.-...++++|+.+|+++.+.. +.. .|..+|+.++ |
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~L--Y 307 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVL--Y 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHH--H
Confidence 22344555556677777777777777665555544445555566677777777777776642 222 3455666655 3
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (601)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (601)
.+..+-.-+. +-......+ +--+.|...+.+.|.-.++.++|...|++.++.+.. ....|+.+..-|....+...|.
T Consensus 308 v~~~~skLs~-LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 308 VKNDKSKLSY-LAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHhhhHHHHH-HHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 3332211111 111111111 222356666777777777777777777777766544 4556677777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007510 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (601)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (601)
+-++.+.+-+ +.|-..|-.|.++|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|.+....|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 7777777665 5566777777777777777777777777776653 4466777777777777777777777777776654
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..+...+..|...+.+.++.++|.+.+++-++
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22456677777777777777777777766554
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=6.3e-15 Score=141.11 Aligned_cols=224 Identities=18% Similarity=0.174 Sum_probs=57.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007510 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (601)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (601)
+...+...++.+.|.+.++++...+ +-++..+..++.. ...+++++|.+++.+..+. .++...+..++..+.+.++
T Consensus 50 ~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 50 LADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred ccccccccccccccccccccccccc-ccccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhH
Confidence 3333344444444444444444433 1133334444443 3444444444444443332 1233334444444444444
Q ss_pred HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (601)
Q Consensus 213 ~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (601)
++++..+++.+... ...+.+...|..+...+.+.|+.++|.+.+++..+.. |.+....+.++..+...|+.+++.+++
T Consensus 126 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 126 YDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 44444444443321 1222334444444444444444444444444444443 333444444444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (601)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (601)
+...+.. ..|...+..+..++...|+.++|...+++..+.. +.|+.+...+.+++...|+.++|.++.++
T Consensus 204 ~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 204 KRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred HHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 4433332 1122333444444444444444444444444432 33444444444444444444444444443
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=3.6e-11 Score=122.43 Aligned_cols=359 Identities=14% Similarity=0.097 Sum_probs=269.8
Q ss_pred hhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (601)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (601)
..|++++|.+++.++. +.+...|.+|...|-+.|+.+++...+-..--.+ +.|...|..+.....+.|.+++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3489999999998864 5677899999999999999999988775554433 55778999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHHhhh
Q 007510 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA----LITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|..-+.. ++..+...++.+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999875 55666666677889999999999999999988743223223333 44556677777999999988876
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---------------------------CCCCHHHHHHHHHH
Q 007510 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN---------------------------IKGTPEVYTIAINC 278 (601)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~li~~ 278 (601)
. .+-..+...++.++..+.+...++.+......+..+. +.++..+ --++-+
T Consensus 309 ~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 309 K-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred h-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 3 2334455577888888999999999888777665521 1222233 122333
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 279 CSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (601)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (601)
+......+....+.....+.. +.-+...|.-+..++...|++.+|+.++..+.....--+..+|-.+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 444444444444555555555 333566888999999999999999999999988766667889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhhcCCHHHH
Q 007510 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------LGLCPNTITYSILLVACERKDDVEVG 428 (601)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~a~~~~g~~~~a 428 (601)
+|.+.|+...... +-+...--+|...+.+.|+.++|++.+..+.. .+..|+..........+...|+.++-
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999998753 33455666788889999999999999998642 23455555566667778888888876
Q ss_pred HHHHHHHH
Q 007510 429 LMLLSQAK 436 (601)
Q Consensus 429 ~~~~~~~~ 436 (601)
..+-.+|+
T Consensus 546 i~t~~~Lv 553 (895)
T KOG2076|consen 546 INTASTLV 553 (895)
T ss_pred HHHHHHHH
Confidence 55555554
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.3e-10 Score=109.66 Aligned_cols=368 Identities=12% Similarity=0.046 Sum_probs=242.7
Q ss_pred HHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChhH
Q 007510 68 FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CK-LYTTLITTCAKSGKVDA 145 (601)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~g~~~~ 145 (601)
+.+....|....|+..|......-+..|.+-+....-.-+.+. ...+.. |.+.| .. .=-.+..++-...+.++
T Consensus 171 Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~----~~~l~~-~l~~~~h~M~~~F~~~a~~el~q~~e 245 (559)
T KOG1155|consen 171 GVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI----LSILVV-GLPSDMHWMKKFFLKKAYQELHQHEE 245 (559)
T ss_pred HHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----HHHHHh-cCcccchHHHHHHHHHHHHHHHHHHH
Confidence 3344555667777777776554444445444433222222222 222222 22222 11 11234456666677788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
+..-.+.....|++-+...-+....+.-...++++|+.+|+++.+... --|..+|+.++-. +..+. .+.++.+-
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s--kLs~LA~~ 321 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS--KLSYLAQN 321 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH--HHHHHHHH
Confidence 888888888888766666555555566677888899999988887631 1256677776643 33221 12222222
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (601)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 303 (601)
......+.|. |+..+.+-|+-.++.++|...|++..+.+ +....+|+.+.+-|....+...|++-++...+.++. |
T Consensus 322 v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-D 397 (559)
T KOG1155|consen 322 VSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-D 397 (559)
T ss_pred HHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-h
Confidence 1111245554 66777788888888889999998888877 666778888888898888888999988888887655 7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (601)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 383 (601)
-..|-.+.++|.-.+...-|+-.|++..+.. +.|...|.+|.++|.+.++.++|++-|.+....| ..+...+..|...
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakL 475 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKL 475 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHH
Confidence 8888888889988888888888888887764 6678888899999999999999999998888765 3456788888888
Q ss_pred HHcCCChhHHHHHHHHHHh----CCCCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 384 LCDGDQLPKTMEVLSDMKS----LGLCPNTI--TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (601)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~ 452 (601)
|-+.++..+|.+.|.+-.+ .|..-+.. ...-|..-+.+.+++++|........+. .+...-.++|+.
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlR 548 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLR 548 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 8888888888888877544 33332211 1222445567778888887766655542 444444444443
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=1e-11 Score=125.28 Aligned_cols=290 Identities=10% Similarity=-0.036 Sum_probs=175.2
Q ss_pred hhHHHHHHHHHHhhCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 73 SQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (601)
Q Consensus 73 ~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (601)
..|+++.|.+.+.+..+ |+ ...+-....+..+.|+++.|.+.+....+....+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34667777777765442 22 2233344455666778888888887776543222223333446667777888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---hccCCHHHHHHHHHHhhh
Q 007510 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITAC---GQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~A~~~~~~~~~ 225 (601)
++.+.+.. +.+..++..+...|.+.|++++|.+.+..+.+.++.+ ...+. .-..++ ...+..+++.+.+..+..
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88877764 4466677777778888888888888888877765432 22221 111111 222222323334433333
Q ss_pred CCC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007510 226 EVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (601)
Q Consensus 226 ~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 302 (601)
... ..+.+...+..+...+...|+.++|.+++++..+.. +.+... ...........++.+.+.+.++...+....
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 210 111356667777777888888888888888777754 222211 111222223456777777777776665332
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 303 DE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 303 ~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 55667777788888888888888854443345777777788888888888888888887754
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=1.3e-14 Score=139.03 Aligned_cols=256 Identities=18% Similarity=0.155 Sum_probs=81.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhcCCh
Q 007510 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (601)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 108 (601)
.+.+.+.|++++|++++++.......|.+..+...+..++...++++.|++.++++.. .++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 4445567777777777754433321245555555555566666667777766666542 233345555554 566667
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 187 (601)
++|.++++...+. .++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.|++
T Consensus 94 ~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 94 EEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7776666655443 2344555566666666677777776666655422 234556666666666677777777777766
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 007510 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (601)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (601)
..+.. +-|....+.++..+...|+.+++.+++...... .+.|...+..+..+|...|+.++|...|++..+.. +.
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~---~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA---APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH---CcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 66552 223555666666666666666666666655542 12333455566666666677777777776666654 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 268 TPEVYTIAINCCSQTGDWEFACSVYDDM 295 (601)
Q Consensus 268 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (601)
|+.+...+...+...|+.++|.++.++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6666666666666667766666666554
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.3e-10 Score=109.76 Aligned_cols=435 Identities=13% Similarity=0.097 Sum_probs=292.2
Q ss_pred CCCCCCCChhhhHHHHHHHH-------hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-
Q 007510 17 KHANYAHDVSEQLHSYNRLI-------RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP- 88 (601)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~-------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 88 (601)
+++.|.+.+..+..-....+ .++++..|+++|++.+..+ ..+..+....+.+--+++.+..|+.+++...
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 33444555554444333333 4788889999999999876 4555566666777778889999999998753
Q ss_pred --CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007510 89 --NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (601)
Q Consensus 89 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (601)
+.-...|-..+-.=-..|+...|.++|++-.+. .|+...|++.|+.=.+.+.++.|..+|+..+-. .|++.+|-
T Consensus 136 ~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wi 211 (677)
T KOG1915|consen 136 ILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWI 211 (677)
T ss_pred hcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHH
Confidence 222345666665566679999999999988765 899999999999999999999999999998754 69999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHH
Q 007510 167 ALIDGCAKAGQVAKAFGAYGIMRSK-NV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMK 242 (601)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~ll~ 242 (601)
--...=.++|....|..+|+...+. |- .-+...+.+...--.++..++.|.-+|.-.... ++.+ ...|.....
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~ 288 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTA 288 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHH
Confidence 9999889999999999999988754 20 111223333333334556777888887766653 2222 333444443
Q ss_pred HHHhcCChhHHHHH--------HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 007510 243 ACANAGQVDRAREV--------YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALID 312 (601)
Q Consensus 243 ~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~ 312 (601)
.--+-|+....... ++.+.+.+ +.|-.+|--.+..-...|+.+...++|++.... ++|-. ..|...|-
T Consensus 289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY 366 (677)
T KOG1915|consen 289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIY 366 (677)
T ss_pred HHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH
Confidence 33344554333322 33444444 556677877787777888888888888887764 33321 12222111
Q ss_pred -----HH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007510 313 -----FA---GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC----SNAKNWQKALELYEHMKSIKLKPTVSTMNAL 380 (601)
Q Consensus 313 -----~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 380 (601)
++ ....+.+.+.++++..++. ++-...|+.-+=-+| .++.++..|++++..... ..|-..++...
T Consensus 367 LWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~Y 443 (677)
T KOG1915|consen 367 LWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGY 443 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHH
Confidence 11 2457788888888887773 333344444433333 467788888888887663 46777788888
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh--h
Q 007510 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--R 457 (601)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~~~--~ 457 (601)
|..-.+.++++....++++.++.+ +-|..+|......=...|+.+.|+.+|+-++.. .++.....|.+.|+-=.. .
T Consensus 444 IelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 444 IELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 888788888888888888888753 335677887777777888888888888888765 334444566666664221 3
Q ss_pred HHHHHHhhh
Q 007510 458 YEKARTLNE 466 (601)
Q Consensus 458 ~~~a~~~~~ 466 (601)
++++..+.+
T Consensus 523 ~ekaR~LYe 531 (677)
T KOG1915|consen 523 FEKARALYE 531 (677)
T ss_pred HHHHHHHHH
Confidence 555555544
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=1.2e-11 Score=123.92 Aligned_cols=283 Identities=13% Similarity=0.053 Sum_probs=143.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 007510 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~ 182 (601)
.|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 46666666655554433111 1222322334445666666666666666654 34432222 2244566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCH------HHHHHHHHHHHhcCChhHHHHH
Q 007510 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (601)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~ 256 (601)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666553 3345555566666666666666666666665532 111111 1122222222233333444444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007510 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (601)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (601)
++.+.+.- +.++.....+...+...|+.++|.+++.+..+. .||.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 44443321 344555555666666666666666666555553 2232111 1122223355555555555555443 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
-|+..+..+...|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++-
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44445555555566666666666666655543 355555555555556666666665555554
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=2e-11 Score=122.39 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=217.4
Q ss_pred hHHHHHHHHHHhhCCCC--CHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChhHHHH
Q 007510 74 QKAIKEAFRFFKLVPNP--TLST-FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMFE 148 (601)
Q Consensus 74 ~~~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~ 148 (601)
.|+++.|.+.+...+.. ++.. |........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 48889999888876542 2333 333344558899999999999999875 45543332 44678889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHH
Q 007510 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVLA 221 (601)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~ 221 (601)
.++++.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 557888999999999999999999999999987644322 123334444444555666777777
Q ss_pred HhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007510 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (601)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 301 (601)
.+... .+.+......+...+...|+.++|.+++++..+. ++++.. .++.+....++.+++++..+...+..+.
T Consensus 254 ~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 254 NQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred hCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 66542 3456777888999999999999999999998874 455432 2344445669999999999999887654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+.+++-..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777889999999999999999999999886 58888889999999999999999999997754
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=1.5e-09 Score=106.81 Aligned_cols=369 Identities=12% Similarity=0.088 Sum_probs=278.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
.|-.=...|-..|..-.+..+....+..|+.. -..||+.-.+.|.+.+.++-|..+|...++-- +.+...|......
T Consensus 481 qWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ 559 (913)
T KOG0495|consen 481 QWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMF 559 (913)
T ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHH
Confidence 34333444444555555555555555555543 24689999999999999999999999988753 5567788888887
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChh
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (601)
=-..|..+....+|++.... ++-....|......+-..|++..|..++.+..... +-+...|...+..-....+++
T Consensus 560 ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELE 635 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHH
Confidence 77889999999999999876 34556677777778888899999999999887641 235667888888889999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEA 330 (601)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (601)
.|..+|.+.... .|+..+|.--+...--.+..++|++++++.++. -|+ .-.|..+.+.+-+.++.+.|.+.|..-
T Consensus 636 raR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G 711 (913)
T KOG0495|consen 636 RARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQG 711 (913)
T ss_pred HHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 999999988764 667788888888888889999999999988876 344 347788888999999999999998876
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 007510 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (601)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 410 (601)
.+. ++-.+..|-.|...--+.|.+-.|+.++++..-.+ +.+...|-..|+.-.+.|+.+.|..+..+.++. ++.+..
T Consensus 712 ~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~ 788 (913)
T KOG0495|consen 712 TKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGL 788 (913)
T ss_pred ccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccch
Confidence 655 35566788888888889999999999999988665 567889999999999999999999999887765 666677
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-H-hhHHHHHHhhhhhhhccCCCccchhhH
Q 007510 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-S-RRYEKARTLNEHVLSFNSGRPQIENKW 482 (601)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (601)
.|.--|....+.++-......+++. +-|+.+.-++-.++ + +++++|.++.+.....+ |+.+..|
T Consensus 789 LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d---~d~GD~w 854 (913)
T KOG0495|consen 789 LWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD---PDNGDAW 854 (913)
T ss_pred hHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC---CccchHH
Confidence 8888888877777755555444332 23444444444443 2 37888888876554433 3444455
No 41
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.55 E-value=4.9e-09 Score=103.23 Aligned_cols=416 Identities=13% Similarity=0.099 Sum_probs=333.1
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh---CCCCCHHHHHHHHH
Q 007510 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMS 100 (601)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~ 100 (601)
.++.++..|..-+.-...+.|+-++.+..+.- |.+......+ .+..-++.|.+++.+ ..+.+...|.+...
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlAl----arLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLAL----ARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHHH----HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 45677888998888888888999999888753 5554444333 333446667666654 45778899998888
Q ss_pred HHHhcCChHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 007510 101 VCASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~ 174 (601)
.=-.+|+.+....+..+ +...|+..+...|..=...|-..|.+-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 88889999988888765 4467888899999998999999999999999999998877643 35689999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 007510 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (601)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (601)
.+.++-|..+|....+. .+.+...|......--..|..++...+|++.... .+-....|......+-..|++..|+
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 99999999999998875 3556777877777767789999999999998864 3444556666677778889999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (601)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (601)
.++....+.. +.+...|.+-+.....+..++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 9999999886 668899999999999999999999999988775 456666666666666679999999999998886
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (601)
Q Consensus 335 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (601)
++.-...|..+...+-+.++++.|++.|..-.+. ++..+..|-.|...-.+.|++-+|..+|++.+-.+ +-|...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 3444668888899999999999999998876543 34456788888888889999999999999987754 446788999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (601)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (601)
.|+.=.+.|+.+.|..+..++++. +..+...|..-|-+..+
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccC
Confidence 999999999999999999988864 44455667766666543
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=3.2e-11 Score=121.68 Aligned_cols=288 Identities=11% Similarity=-0.009 Sum_probs=153.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 007510 103 ASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVA 179 (601)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 179 (601)
...|+++.|.+.+....+.. |+ ...+-....++.+.|+.+.|.+.+.+..+. .|+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 34677777777777666542 33 333444456666777788887777776654 2333 23334466677777788
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHH-HHHHH---HhcCChhHHHH
Q 007510 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMKAC---ANAGQVDRARE 255 (601)
Q Consensus 180 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-ll~~~---~~~g~~~~a~~ 255 (601)
.|...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+ . ++...+.. -..++ ...+..+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--L-FDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 8887777777664 3355566677777777788877777777776542 1 12121210 11111 12222222222
Q ss_pred HHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHH
Q 007510 256 VYKMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID--FAGHAGKVEAAFEILQEA 330 (601)
Q Consensus 256 ~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~ 330 (601)
.+..+.+.. .+.++..+..+...+...|+.++|.+++++..+....+....+. ++. .....++.+.+.+.++..
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHH
Confidence 333333221 12355666667777777777777777777766653321111101 111 112234555555555554
Q ss_pred HHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 331 KNQGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 331 ~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
.+.. +-|+ ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 326 lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 326 AKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4432 2233 3444555555566666666666553222222455555555555555566666665555553
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=2e-10 Score=103.54 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=126.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCH
Q 007510 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV------HTYGALIDGCAKAGQV 178 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~~ 178 (601)
+.+.++|.++|-+|.+.. +.+..+.-+|.+.|.+.|.++.|+++++.+.++ ||. .+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 356777777777777643 334555666777777777777777777777653 332 2334455566677777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHhcCChhHHH
Q 007510 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAR 254 (601)
Q Consensus 179 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~ 254 (601)
+.|..+|..+.+.| .--......|+..|-...+|++|+++-+++.+.+ -.+. ...|.-+...+....+.+.|.
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 77777777776544 2234455566667777777777777666555421 1111 112333334444445566666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (601)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (601)
.++.+..+.+ +.++.+--.+...+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+..+.+.
T Consensus 201 ~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 201 ELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666655544 33333334445555566666666666666655544333344555555566666666666555555544
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.5e-10 Score=108.60 Aligned_cols=390 Identities=15% Similarity=0.168 Sum_probs=253.1
Q ss_pred HHHHHHhhhHHHHHHHHHHhhCCC----CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 007510 66 RFFNVCKSQKAIKEAFRFFKLVPN----PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITT 136 (601)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~ 136 (601)
.+..-+..+.-..+|+..|+-+.. ||.- .--.+...+.+...+.+|+..++.....-...+ ....+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344445555667788888876542 2221 112244567788899999999988776522222 2234444445
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHH
Q 007510 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVK------------PDRVVFNALI 204 (601)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------p~~~~~~~li 204 (601)
+.+.|+++.|+..|+...+. .||..+-..|+-++..-|+.++..+.|.+|...... |+....+.-|
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 67889999999999998776 688877777777777789999999999999765333 3333333322
Q ss_pred H-----HHhccCCHHHHHHHH---HHhhhCCCCCCCCHH---------------------HHHHHHHHHHhcCChhHHHH
Q 007510 205 T-----ACGQSGAVDRAFDVL---AEMNAEVHPVDPDHI---------------------TIGALMKACANAGQVDRARE 255 (601)
Q Consensus 205 ~-----~~~~~g~~~~A~~~~---~~~~~~~~~~~~~~~---------------------~~~~ll~~~~~~g~~~~a~~ 255 (601)
. -.-+.. -..|.+.. ..+.. +-+.||-. .-..-...|.+.|+++.|.+
T Consensus 364 ~nd~lk~~ek~~-ka~aek~i~ta~kiia--pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 364 KNDHLKNMEKEN-KADAEKAIITAAKIIA--PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred hhHHHHHHHHhh-hhhHHHHHHHHHHHhc--cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 1 111111 11122211 11111 11222210 00112445789999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHH------------------------------------HHhcCCHHHHHHHHHHHHHCC
Q 007510 256 VYKMIHKYNIKGTPEVYTIAINC------------------------------------CSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~------------------------------------~~~~g~~~~a~~~~~~m~~~~ 299 (601)
++.-+.+.+-+.-...-+.|-.. -..+|++++|.+.+++.+...
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 99877665422211111111111 112478889999888887764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 300 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (601)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (601)
..-....|+ +.-.+...|++++|++.|-++..- +..+..+...+...|-...+..+|++++-+.... ++.|+....-
T Consensus 521 asc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred hHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 322222232 223466788999999888766432 2346777788888898899999999998877653 4557788888
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 007510 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--- 456 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--- 456 (601)
|...|-+.|+-.+|.+..-+--+. ++-|..|..-|..-|....-++.++.+|++..- +.|+..-|..+|..|.|
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 999999999999998877664443 556778888888888888888999999988765 78999999999998876
Q ss_pred hHHHHHHhhh
Q 007510 457 RYEKARTLNE 466 (601)
Q Consensus 457 ~~~~a~~~~~ 466 (601)
.|.+|..+..
T Consensus 675 nyqka~d~yk 684 (840)
T KOG2003|consen 675 NYQKAFDLYK 684 (840)
T ss_pred cHHHHHHHHH
Confidence 5666665544
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.4e-11 Score=121.65 Aligned_cols=283 Identities=14% Similarity=0.085 Sum_probs=160.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007510 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDV 219 (601)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~ 219 (601)
+..+|...|..+.+. +.-+..+...+..+|...+++++|.++|+.+.+.. .--+...|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 345666666664433 12233444556666666677777777776665431 011344555554333211 11111
Q ss_pred HH-HhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 220 LA-EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 220 ~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
+. ++... .+-...+|.++.++|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~---~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDT---DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhh---CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 11 11111 11223466677777777777777777777666654 335566666666666667777777777666544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007510 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (601)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 378 (601)
... +-..|--+...|.+.++++.|+-.|+.+.+-+ +.+.+....+...+-+.|+.++|++++++..... +.|+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 222 22344455556667777777777777666655 3445555556666667777777777777666543 23444444
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
..+..+...+++++|+..++++++ +.|+. ..|..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 455556666777777777777766 44543 44556666677777777777666666553
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=4e-10 Score=104.88 Aligned_cols=286 Identities=16% Similarity=0.122 Sum_probs=213.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 184 (601)
.|++.+|+++..+-.+.+ +.....|..-..+.-..|+.+.+-.++.+..+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 589999999998877776 3345567777788888899999999999988763356677777888888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC-------HHHHHHHHHHHHhcCChhHHHHHH
Q 007510 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-------HITIGALMKACANAGQVDRAREVY 257 (601)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~ 257 (601)
.+++.+.+ +.++........+|.+.|++.+...++..+.+.+ .-.| ..+|..++.-....+..+.-...+
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~--~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG--LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 88888775 5567788888899999999999999999988753 3222 235666666666666666656666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007510 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (601)
Q Consensus 258 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (601)
+..++. .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+ -.+.+.++...-.+..++..+.. +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 666554 355567777788888888888888888888888776654 2222 23455677777666666655543 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
++-.+.+|...|.+.+.+.+|.+.|+..... .|+..+|+.+.++|.+.|+..+|.+.+++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5577778888888888888888888876654 57888888888888888888888888877543
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=2e-10 Score=103.60 Aligned_cols=271 Identities=17% Similarity=0.165 Sum_probs=159.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHHHHHhcCChhH
Q 007510 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDR 252 (601)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~ 252 (601)
+.+.++|.++|-+|.+.. +-+..+--+|.+.|-+.|..|.|++++..+... ++...+ ....-.|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 355566666666665431 112223334555566666666666666665542 111111 1223344555666777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQ 328 (601)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~ 328 (601)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++...+..+.. ..|.-+...+....+.+.|...+.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 777777766644 233455666777777777777777777777666554432 234455555555667777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007510 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (601)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (601)
+..+.+ +.++..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+. .+.
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g 281 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTG 281 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCC
Confidence 777665 33444555666777777888888888887776543223455667777888888888888877777664 333
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 409 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (601)
Q Consensus 409 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (601)
...-..+...-....-.+.|...+.+-++ -.|+...+..||+.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~ 324 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDY 324 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHh
Confidence 33333333333344444555555544443 35777777777764
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.4e-11 Score=120.00 Aligned_cols=258 Identities=11% Similarity=0.011 Sum_probs=161.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (601)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (601)
+..+|...|.++... +.-+......+..+|...+++++|.++|+.+.....-...+...|++.+--+-+ +-+...
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 346777777775544 122223444566777788888888888877766432222345566666533221 112222
Q ss_pred H-HHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007510 257 Y-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (601)
Q Consensus 257 ~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (601)
+ +.+.+.+ +..+.+|.++.++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 2333333 555678888888888888888888888877766433 56677777777777777888888887765442
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007510 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (601)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 415 (601)
+-+-..|..+...|.+.++++.|.-.|+...+.+ +.+.+....+...+.+.|+.++|+++++++.... +-|+..--.-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 1223334445667778888888888888777755 3455666667777777888888888888776632 1233333344
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007510 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (601)
Q Consensus 416 l~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~ 446 (601)
...+...+++++|.+.++++++ +.|+..+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~ 592 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESS 592 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHH
Confidence 4556667777888888887777 5555443
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2e-09 Score=102.46 Aligned_cols=387 Identities=11% Similarity=0.067 Sum_probs=242.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CC-HHHHHHHHHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PT-LSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~ 109 (601)
|...++|++++|++.+.+.+... |....++......+...|++++..+.--+..+ |+ +..+.--.+++-+.|++.
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 34458999999999999999876 56577777788888888999988877665443 32 345666666777778887
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHh------------
Q 007510 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAK------------ 174 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g--~~~~~~~~~~li~~~~~------------ 174 (601)
+|+.=.....-.+.-.|..+-..+=+.+- ..|.+..++-.+ .+ +-|+.....+....+..
T Consensus 201 eal~D~tv~ci~~~F~n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQNASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred HHHHhhhHHHHhhhcccchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 77543322211110111111111111111 111111111111 11 22333333332222211
Q ss_pred -------------cC---CHHHHHHHHHHHHhC-CCCC-----CH------HHHHHHHHHHhccCCHHHHHHHHHHhhhC
Q 007510 175 -------------AG---QVAKAFGAYGIMRSK-NVKP-----DR------VVFNALITACGQSGAVDRAFDVLAEMNAE 226 (601)
Q Consensus 175 -------------~g---~~~~A~~~~~~m~~~-g~~p-----~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 226 (601)
.+ .+..|.+.+.+-... -..+ |. .+.......+.-.|+...|..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01 122222222221100 0011 11 11111111233457888888888887764
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007510 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (601)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 306 (601)
. +.+...|--+..+|....+.++....|+...+.+ +.++.+|..-...+.-.+++++|..=|++.....+. +...
T Consensus 356 ~---~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 356 D---PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred C---cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 1 1222236667778899999999999999998887 667788888888888889999999999998877543 4556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------HH--HH
Q 007510 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-------VS--TM 377 (601)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-------~~--~~ 377 (601)
|--+.-+..+.++++++...|++.+++ ++..+.+|+.....+...+++++|.+.|+...+. .|+ .. .-
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~ 507 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVH 507 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhh
Confidence 666666666788999999999998876 5677889999999999999999999999988764 233 11 11
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
-.++..- =.+++..|..++++..+ +.|. ...|.+|...-.+.|+.++|+++|++...
T Consensus 508 Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 508 KALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1122111 23888999999999988 4454 56788999899999999999999987654
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=6.3e-08 Score=92.08 Aligned_cols=366 Identities=14% Similarity=0.094 Sum_probs=266.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 007510 62 VYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTC 137 (601)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~ 137 (601)
......++.--+++++..|+.+|+... ..+...|-..+..=.++.....|..++++.+.. -|- ...|-.-+.+=
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence 333344445556788899999999865 456778888888888999999999999998875 333 23455566666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007510 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (601)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 217 (601)
-..|++..|.++|+.-.+- .|+..+|++.|+.=.+-+.++.|..+|++..-- .|+..+|--..+.--+.|....+.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 7789999999999998876 899999999999999999999999999998854 689999988888888899999999
Q ss_pred HHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH----
Q 007510 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSV---- 291 (601)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~---- 291 (601)
.+|+........-..+...+.+...--.++..++.|.-+|....+.- +.+ ...|..+...--+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 99988775311111123344444444456778899999998887752 333 45566666555566665443333
Q ss_pred ----HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHH--------HHHHhcCCHHH
Q 007510 292 ----YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-I-SYSSLM--------GACSNAKNWQK 357 (601)
Q Consensus 292 ----~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~-~~~~li--------~~~~~~g~~~~ 357 (601)
++.+...+.. |-.+|--.+..-...|+.+...++|+..+..- +|-. . .|...| -.-....+.+.
T Consensus 307 Rk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 2344444432 66777777777778899999999999988763 4421 1 111111 11135788999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH----HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007510 358 ALELYEHMKSIKLKPTVSTMNAL----ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (601)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (601)
+.++|+...+. ++....|+.-+ ..--.++.++..|.+++...+ |.-|...+|...|..=.+.+.++..+.+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999988873 33344555443 333446788999999998876 468999999999999999999999999999
Q ss_pred HHHHCC
Q 007510 434 QAKEDG 439 (601)
Q Consensus 434 ~~~~~g 439 (601)
+.++.+
T Consensus 462 kfle~~ 467 (677)
T KOG1915|consen 462 KFLEFS 467 (677)
T ss_pred HHHhcC
Confidence 999854
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.1e-09 Score=106.29 Aligned_cols=370 Identities=10% Similarity=0.049 Sum_probs=260.1
Q ss_pred HhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCChhHH
Q 007510 71 CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTLITTCAKSGKVDAM 146 (601)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~a 146 (601)
+......++|+..|++....|+..+..+...-.. ..-.+.+.++.+.... ...+......+.........-++.
T Consensus 151 y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~ 228 (611)
T KOG1173|consen 151 YVALDNREEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEES 228 (611)
T ss_pred hhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccc
Confidence 3444567788888887776666666655443222 1222323333332211 112222222222222111111111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhC
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 226 (601)
...-.+-.-.+...+.........-+...+++.+..++++...+.. +++...+..-|.++...|+..+-..+=..+...
T Consensus 229 ~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~ 307 (611)
T KOG1173|consen 229 LTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL 307 (611)
T ss_pred cccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 1111111112335566667777777888999999999999998774 666777777778889999888777776777653
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH
Q 007510 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDE 304 (601)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~ 304 (601)
.+....+|-++..-|.-.|...+|++.|.+....+ +.-...|-.+...|.-.|..+.|+..+...-+. |..
T Consensus 308 ---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h--- 380 (611)
T KOG1173|consen 308 ---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH--- 380 (611)
T ss_pred ---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---
Confidence 34556789999988999999999999999887765 333568999999999999999999998876553 321
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC----CHHHHH
Q 007510 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI--KLKP----TVSTMN 378 (601)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~----~~~~~~ 378 (601)
..+--+.--|.+.+..+.|.++|.+..... +.|+.+++-+.-.....+.+.+|..+|+...+. .+.+ -..+++
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 113333445788899999999999988764 678889999988888899999999999987631 0111 234678
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (601)
.|..+|.+.+.+++|+..+++.+.. .+-|..++.++.-.+...|+++.|.+.|.+.+- +.|+..+...++..+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 8999999999999999999998875 355788999999999999999999999998776 789988888777654
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=2.6e-08 Score=98.15 Aligned_cols=399 Identities=16% Similarity=0.182 Sum_probs=202.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 112 (601)
..++++|++..-+..|+..++.-.+.....+....+++..+.+-++-+++++.+-..-++..-+-.|..+++.++.++|.
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 34558899988888898887654333344444455555555555556666665544444444555556666666666666
Q ss_pred HHHHHHHHc------CCCCCHH--------------------------------------HHHHHHHHHHhcCChhHHHH
Q 007510 113 QVLRLVQEA------GLKADCK--------------------------------------LYTTLITTCAKSGKVDAMFE 148 (601)
Q Consensus 113 ~~~~~m~~~------g~~~~~~--------------------------------------~~~~li~~~~~~g~~~~a~~ 148 (601)
+.+...... ..+.+.. .|++|.+-|.+.|.++.|.+
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 655544321 0122333 34455555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHhCCC-----------CC
Q 007510 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------------------VAKAFGAYGIMRSKNV-----------KP 195 (601)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~~~m~~~g~-----------~p 195 (601)
+|++.... ..++.-|+.+.+.|+.... ++-.+..|+.+...+. +.
T Consensus 270 vyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 270 VYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 55554432 2233334444444433111 1111112222211100 00
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---H
Q 007510 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---P 269 (601)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~ 269 (601)
+...|..-+. ...|+..+-...+.+......+.. .-...|..+.+.|-+.|+++.|+.+|++..+...+.- .
T Consensus 348 nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 348 NVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred cHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 1111111111 112333444444444443211100 0123466667777777778888887777766543222 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----------P-------DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
.+|..-...-.+..+++.|+++.+......-. | +...|+..++.-...|-++....+++.+.+
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45656666666777777777777665432111 1 123344445544556667777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCC
Q 007510 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD---GDQLPKTMEVLSDMKSLGLCPN 408 (601)
Q Consensus 333 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~ 408 (601)
..+-. +.......-.+-...-++++.++|++-...-..|++ ..|+..+.-+.+ .-.++.|..+|++.++ |++|.
T Consensus 506 LriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 506 LRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 55322 222112222334445567777777765544334554 456665554442 3357788888888887 67766
Q ss_pred HHHHHHHH--HHHhhcCCHHHHHHHHHHHHH
Q 007510 409 TITYSILL--VACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 409 ~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..-+.-|+ ..=...|....|+.+++++..
T Consensus 584 ~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 43322222 223446777777777777543
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=8e-09 Score=96.40 Aligned_cols=286 Identities=12% Similarity=0.046 Sum_probs=196.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007510 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (601)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 219 (601)
.|++..|+++..+-.+.+ +.....|..-..+--+.|+.+.+-+++.+.-+.--.++....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888776665 3334455555666677788888888888877653244555555666777788888888887
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 007510 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------EVYTIAINCCSQTGDWEFACSVY 292 (601)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~ 292 (601)
++++.... +....+......+|.+.|++.....++..+.+.+.-.+. .+|+.++.-....+..+.-...+
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 77776531 344567777788888888888888888888887765543 24566666555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007510 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (601)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (601)
+..... ..-++..-.+++.-+.+.|+.++|.++..+..+++..|+. . ..-.+.+.++...-.+..+.-.... +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---C-RLIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---H-HHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 555433 2335566667777778888888888888888877765551 1 1224456666666666555544321 23
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
++..+.+|...|.+++.+.+|...|+...+ ..|+..+|..+..++.+.|+..+|.++.++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 446777888888888888888888887776 578888888888888888888888888877653
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=3.5e-10 Score=114.82 Aligned_cols=264 Identities=15% Similarity=0.151 Sum_probs=155.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (601)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (601)
.||.+||..+|.-||..|+.+.|- +|..|.-...+.+...++.++......++.+.+. .|...||..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 456666666666666666666666 6666665555556666666666666666655554 4566666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 007510 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (601)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 248 (601)
..+|..+|+... ++..++ -.-.++..+...|--..-..++..+.-. .+.-||..+ ++......|
T Consensus 90 l~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~-p~~lpda~n---~illlv~eg 153 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCC-PHSLPDAEN---AILLLVLEG 153 (1088)
T ss_pred HHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccC-cccchhHHH---HHHHHHHHH
Confidence 666666666544 222221 1111222233333333333333222111 233444333 333345556
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (601)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (601)
.++.+.+++..++...... +... +++-.... ..+++-....+...+ .|++.+|..++..-...|+.+.|..++
T Consensus 154 lwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 6666666666554432111 1111 13322222 223333332222222 478888888888888889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007510 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (601)
Q Consensus 328 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (601)
.+|.+.|++.+..-|..|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+.++|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999888888877777755 77888888888888888889998888877777777665
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.34 E-value=1.4e-09 Score=114.17 Aligned_cols=248 Identities=12% Similarity=0.000 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHhhCC---CCCHHHHHHHHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007510 74 QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (601)
Q Consensus 74 ~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 141 (601)
.+++++|+.+|++.. +.+...|..+..++. ..+++++|...+++..+.. +.+...+..+..++...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 456888999998754 334556655554443 2345789999999999875 557888888888999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHH
Q 007510 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVL 220 (601)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 220 (601)
++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999998875 4457788889999999999999999999998774 33 233334455566789999999999
Q ss_pred HHhhhCCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 221 AEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
++..... +| +...+..+...+...|+.++|...+.++.... +.+....+.+...|...| +.|...++.+.+..
T Consensus 430 ~~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 430 DELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 9887531 23 34456667788889999999999998876553 334555667777778777 47777777765531
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 300 -VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (601)
Q Consensus 300 -~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (601)
..|....+ +-..+.-.|+.+.+... +++.+.+
T Consensus 504 ~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 QRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 12222222 33344556776666665 7777664
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=9e-09 Score=100.03 Aligned_cols=287 Identities=14% Similarity=0.059 Sum_probs=219.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007510 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (601)
Q Consensus 122 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (601)
+...+......-.+-+...+++.+..++++.+.+.. +++...+..-|..+...|+..+-..+=.+|.+.- +-...+|-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~ 316 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWF 316 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchh
Confidence 345566666677777888899999999999988765 6677777777778888888887777777777662 55677888
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007510 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (601)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (601)
++.--|...|...+|.+.|.....-...+ ...|-.....|+-.|..++|...+....+.= +....-+--+.--|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 88888888899999999998876432222 2367778888888899999998887665541 1111122233445778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCCH
Q 007510 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNW 355 (601)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~ 355 (601)
.+..+.|.+.|.+.....+. |+..++-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 88999999999887766443 7777777777777788899999999877621 1 011244688999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (601)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (601)
++|+..|++..... +.+..++.++.-.|...|+++.|.+.|.+.+- +.||..+-+.++..
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 99999999988764 67889999999999999999999999999876 78999888887763
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=1.9e-09 Score=100.34 Aligned_cols=200 Identities=14% Similarity=0.056 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3455566666777777777777777766654 445566677777777777777777777777665433 44556666667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 007510 314 AGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 392 (601)
+...|++++|...++...+... +.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777765421 2234456666777777888888888887777643 2345667777777778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888877664 234455666666777777888888777766654
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=2e-09 Score=100.24 Aligned_cols=196 Identities=16% Similarity=0.103 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (601)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..... +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444444444444555544444444332 2233444444444444455555555544444332 223333444444444
Q ss_pred ccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (601)
Q Consensus 209 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (601)
..|++++|.+.+.+..... ........+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4444444444444443210 011112223333344444444444444444444332 22233444444444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (601)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (601)
...+++..+.. ..+...+..+...+...|+.++|..+.+.
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444443331 11233333333344444444444444333
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=3.1e-09 Score=111.50 Aligned_cols=249 Identities=10% Similarity=0.041 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHHhc-----cCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHH---------hcCChhHHHHHHHH
Q 007510 195 PDRVVFNALITACGQ-----SGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACA---------NAGQVDRAREVYKM 259 (601)
Q Consensus 195 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~ 259 (601)
.+...|...+.+... .+..++|..+|++.... .|+ ...+..+..+|. ..+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 344555444444211 13456777888777653 343 334444444333 22346788888888
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007510 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (601)
Q Consensus 260 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 339 (601)
..+.+ +.+..++..+...+...|++++|...|++..+.++. +...+..+...+...|++++|...+++..+.+.. +.
T Consensus 330 Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~ 406 (553)
T PRK12370 330 ATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RA 406 (553)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Ch
Confidence 87776 566777777777788888888888888888776543 4556777777788888888888888888776522 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 007510 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVA 418 (601)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a 418 (601)
..+..++..+...|++++|...+++..+...+.+...+..+...|...|+.++|...++++... .|+..+. ..+...
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~ 484 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAE 484 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHH
Confidence 3333344456667788888888887765431223455666777777888888888888776552 4554443 344445
Q ss_pred HhhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007510 419 CERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (601)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~~ 454 (601)
+...| +.+...++.+.+. .-.|....+..++..+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 56666 3666666666543 3334434445555444
No 60
>PF13041 PPR_2: PPR repeat family
Probab=99.32 E-value=4.5e-12 Score=85.10 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 007510 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (601)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 421 (601)
||..+||++|++|++.|++++|.++|++|.+.|++||..||++++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=1.8e-09 Score=109.86 Aligned_cols=275 Identities=14% Similarity=0.119 Sum_probs=189.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007510 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (601)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (601)
.++..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45666777888888888888888888888888887 8888877777777888888888888888877665
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCCCHHH
Q 007510 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-YNIKGTPEV 271 (601)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 271 (601)
.|...+|..|..+|...|++.. |+...+ -...+...+...|--.....++..+.- .+.-||.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda-- 142 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA-- 142 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH--
Confidence 6677888888888888888765 322221 122233444555555544444444221 1222332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (601)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (601)
...+......|.++.+++++..+...... .+. ..+++-+..... ...++........-.|++.+|.+++++-..
T Consensus 143 -~n~illlv~eglwaqllkll~~~Pvsa~~-~p~--~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 143 -ENAILLLVLEGLWAQLLKLLAKVPVSAWN-APF--QVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALA 216 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCccccc-chH--HHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Confidence 23344455667788888877766543221 111 112443333222 233333332222225899999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 007510 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (601)
Q Consensus 352 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (601)
.|+.+.|..++..|.+.|++.+..-|-.|+-+ .+...-+..+++.|.+.|+.|+..|+...+..|...|.
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999999999998888877777776 78888888999999999999999999998888888555
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=1.3e-11 Score=82.82 Aligned_cols=50 Identities=36% Similarity=0.658 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007510 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (601)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (601)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=9.8e-10 Score=99.20 Aligned_cols=234 Identities=15% Similarity=-0.004 Sum_probs=155.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 007510 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (601)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (601)
|-..-+.+.++|.+.|.+.+|.+.|+.-... .|-..||..|-+.|.+..+++.|+.++.+-.+.- +.++....-+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ 296 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQ 296 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhhhhh
Confidence 3333355667777777777777777766543 3444566667777777777777777777766642 4444444556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (601)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (601)
...+-..++.++|.++++...+.... ++.....+...|.-.++++.|+.+++++.+.|+ .++..|+.+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 66666777777777777777665433 555566666667777777777777777777773 4566777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007510 356 QKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (601)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 433 (601)
+-++.-|++....--.|+ ...|-.+.......|++.-|.+.|+-.+..+ .-+...++.|.-.-.+.|++++|+.+++
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 777777777665433343 3456666666677777777777777766542 2234667777766777777777777777
Q ss_pred HHHH
Q 007510 434 QAKE 437 (601)
Q Consensus 434 ~~~~ 437 (601)
....
T Consensus 454 ~A~s 457 (478)
T KOG1129|consen 454 AAKS 457 (478)
T ss_pred Hhhh
Confidence 6655
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=4.2e-07 Score=85.17 Aligned_cols=309 Identities=12% Similarity=0.027 Sum_probs=193.6
Q ss_pred CCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 122 GLKADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 122 g~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
.++|...+....+.+++.+ ++...+...+-.+... -++-|+.....+...+...|+.++|...|++.... .|+..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i 266 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNV 266 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhh
Confidence 3344444444555555443 4444444444444332 24557777888888888888888888888887754 33322
Q ss_pred H-HHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007510 199 V-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (601)
Q Consensus 199 ~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 277 (601)
+ .....-.+.+.|+.+....+...+.... .-....|-.-....-...+++.|..+-++..+.+ +.+...+-.-..
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~ 342 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGR 342 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccH
Confidence 2 1111223456677777777666665421 1122223222333345567777887777777665 445556666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCH
Q 007510 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS-NAKNW 355 (601)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~ 355 (601)
.+...|++++|.-.|+..+...+ .+..+|.-++..|...|++.+|..+-+...+. ++.+..+...+. ..+. ....-
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 77788888888888887766532 26678888888888888888887776665543 233445544442 2222 22234
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007510 356 QKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 356 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (601)
++|.++++.-... .|+ ....+.+...+...|..++++.++++... ..||....+.|.+.+...+.++++.+.|..
T Consensus 421 EKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 421 EKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6778887776653 455 34556667777788888888888888766 577888888888888888888888888877
Q ss_pred HHHCCCCCCH
Q 007510 435 AKEDGVIPNL 444 (601)
Q Consensus 435 ~~~~g~~p~~ 444 (601)
... ++|+.
T Consensus 497 ALr--~dP~~ 504 (564)
T KOG1174|consen 497 ALR--QDPKS 504 (564)
T ss_pred HHh--cCccc
Confidence 776 44443
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.21 E-value=1.8e-06 Score=85.71 Aligned_cols=389 Identities=13% Similarity=0.113 Sum_probs=203.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHH
Q 007510 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (601)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (601)
.+++...+.+.+.+.+.. |......+..+-.....|+.++|........ ..+.+.|..+.-.+-...++++|+..
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 456666666666666533 3333333332222333455566665554433 23455666666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-C
Q 007510 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-V 193 (601)
Q Consensus 115 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 193 (601)
|+.....+ +.|...+.-|--.-++.|+++-.......+.+.. +.....|..+..++.-.|+...|..+.+...+.. -
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66666554 4455556555555556666666555555555432 2234456666666666666666666666655432 2
Q ss_pred CCCHHHHHHHH------HHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 007510 194 KPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (601)
Q Consensus 194 ~p~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 267 (601)
.|+...+.... ......|..++|.+.+..-... +......-.+-...+.+.+++++|..++..+..++ +.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-ch
Confidence 34444433222 1233455556665555443221 11111122233444556666666666666666553 22
Q ss_pred CHHHHHHHHHHHHhcCC-----------------------------------HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 268 TPEVYTIAINCCSQTGD-----------------------------------WEFACSVYDDMTKKGVIPDEVFLSALID 312 (601)
Q Consensus 268 ~~~~~~~li~~~~~~g~-----------------------------------~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (601)
+..-|-.+..++.+-.+ .+..-+++..+.+.|+++ ++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 22222223333321111 222333444445555543 2333333
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 007510 313 FAGHAGKVEAAFEILQEAKN----QG----------ISVGIIS--YSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-S 375 (601)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~ 375 (601)
.|-.....+-..++...+.. .| -+|.... +-.++..|-+.|+++.|....+....+ .|+. .
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH
Confidence 33222221111111111111 11 1344333 345677788888888888888888765 4654 3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (601)
.|..=.+.+...|.+++|..++++..+.+ .||...=+--..-..++...++|.++.....+.|.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 45555677888888888888888887753 34554444555556678888888888888877764
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=9.4e-07 Score=84.75 Aligned_cols=154 Identities=12% Similarity=0.081 Sum_probs=104.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (601)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 359 (601)
.-.|+.-.|..-|+..+.....++. .|-.+..+|....+.++....|+...+.+ +-|+.+|..-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3456677777777777766554332 25555566777777777777777777765 445667777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 360 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 360 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
.=|++..+.. +-+...|-.+..+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+..++
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 7777777643 234555666666666777777777777777664 444466777777777777777777777777765
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=5.1e-09 Score=94.66 Aligned_cols=228 Identities=14% Similarity=0.071 Sum_probs=104.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 007510 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (601)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 246 (601)
.|..+|.+.|.+.+|.+.|+.-... .|-+.||..|-+.|.+..+...|+.++.+-... ++-|+.....+.+.+-.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHHH
Confidence 3444555555555555555444443 334444444445555555555555555444331 22222222333444444
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (601)
.++.++|.++++...+.. +.++.....+...|.-.++++.|+..++++++.|+. ++..|..+.-+|.-.++++.++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 455555555555544443 333444444444444555555555555555555544 444444444444444555555555
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 327 LQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 327 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
|++....--.|+ ..+|..|.......|++..|.+.|+-....+ ..+..++|.|.-.-.+.|++++|..++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 544443322121 2234444444444555555555555444332 22334444444444455555555555544443
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=7.7e-06 Score=80.56 Aligned_cols=417 Identities=14% Similarity=0.103 Sum_probs=234.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHH--HHHHH--H
Q 007510 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVC--A 103 (601)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--li~~~--~ 103 (601)
-....|...++|++++|.+...+++..+ |.+......-.-...+.+.+++|+.+.+.-... .+++. +=.+| .
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 3445566678999999999999999876 444443333333455678899999776653311 11121 23344 4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 007510 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA-KAGQVAKAF 182 (601)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~ 182 (601)
+.+..++|+..++-.. +.|..+...-...+.+.|++++|.++|+.+.+.+.+ + +...+.+-+ ..+-...+.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH
Confidence 6788999998887222 224446666777888999999999999999766422 1 111111100 000000111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH---HHHhccCCHHHHHHHHHHhhh--------CCCC---CCCCH-HHHHHHHHHHHhc
Q 007510 183 GAYGIMRSKNVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDH-ITIGALMKACANA 247 (601)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~A~~~~~~~~~--------~~~~---~~~~~-~~~~~ll~~~~~~ 247 (601)
+ +......| ..+|..+. -.+...|++.+|+++++.... ...+ +..+. ..-..+.-.+-..
T Consensus 163 -~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 -L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred -H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 1 11111122 22333333 234556777777777766511 0000 00000 0112233445566
Q ss_pred CChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHh------------------------------------------
Q 007510 248 GQVDRAREVYKMIHKYNIKGTP----EVYTIAINCCSQ------------------------------------------ 281 (601)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~------------------------------------------ 281 (601)
|+.++|..++..+.+.+. +|. ..-|.|+..-..
T Consensus 238 Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666652 221 111222211110
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 282 ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (601)
Q Consensus 282 ---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 356 (601)
.+..+.+.++-... .+..|. ..+..++..+.+ ......+.+++...-+....-...+.-..+......|+++
T Consensus 317 ~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 11111111111111 112222 334444444332 2246677777777666543334566777788889999999
Q ss_pred HHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHhhc
Q 007510 357 KALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTI----TYSILLVACERK 422 (601)
Q Consensus 357 ~A~~~~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~----t~~~ll~a~~~~ 422 (601)
.|.+++. .+.+.+..|- +...+...+.+.++.+-|..++.+.... .-.+... ++.-+...-.+.
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 9999999 6666554454 4456677777888777788887776531 0112222 233333344668
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-hHHHHHHhhhhh
Q 007510 423 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHV 468 (601)
Q Consensus 423 g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~-~~~~a~~~~~~~ 468 (601)
|+-++|..+++++.+. ..+|..+...++.+|++ .-++|..+...+
T Consensus 472 G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKAESLSKKL 517 (652)
T ss_pred CchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence 9999999999999985 24577888999999998 677777776654
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=1.2e-07 Score=96.38 Aligned_cols=288 Identities=14% Similarity=0.119 Sum_probs=152.1
Q ss_pred HhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CC
Q 007510 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----GK 142 (601)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~ 142 (601)
....|++++|++.++... .............+.+.|+.++|..+++.+++.+ +.|..-|..+..+..-. .+
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccccc
Confidence 344566666666665432 1223344555667777788888888888777775 33444444454444222 23
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007510 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA-KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (601)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (601)
.+...++|+++... -|...+...+.-.+.....+. .+...+..+..+|++ .+|+.|-..|.......-..+++.
T Consensus 93 ~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 93 VEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred HHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHH
Confidence 55566777776554 233333333322222222232 344445556666753 345555555555444444444444
Q ss_pred HhhhCC------------CCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007510 222 EMNAEV------------HPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 287 (601)
Q Consensus 222 ~~~~~~------------~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 287 (601)
...... ..-+|... ++..+...|...|++++|.+..+...+.. |..+..|..-...|-+.|++.+
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 433210 00123322 22334555666667777777766666654 3335666666666666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHhcCCHHHHH
Q 007510 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--------YSSLMGACSNAKNWQKAL 359 (601)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~ 359 (601)
|.+.++.....+.. |...-+..+..+.+.|+.++|.+++....+.+..|-... ......+|.+.|++..|+
T Consensus 247 Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 76666666665544 555555666666666666666666666655443221111 123344555555555555
Q ss_pred HHHHHHH
Q 007510 360 ELYEHMK 366 (601)
Q Consensus 360 ~~~~~m~ 366 (601)
+.|..+.
T Consensus 326 k~~~~v~ 332 (517)
T PF12569_consen 326 KRFHAVL 332 (517)
T ss_pred HHHHHHH
Confidence 5555443
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=3.5e-07 Score=92.91 Aligned_cols=289 Identities=14% Similarity=0.142 Sum_probs=151.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhc-----c
Q 007510 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITACGQ-----S 210 (601)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~-----~ 210 (601)
+...|++++|++.++.-... +.............+.+.|+.++|..+|..+...+ |+...|. .+..+..- .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34555555555555443322 12223333444455555555555555555555552 2333332 23233211 1
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (601)
Q Consensus 211 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (601)
...+...++++++... -|.......+.-.+..-..+ ..+...+..+...|+| .+++.+-..|....+..-..
T Consensus 91 ~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 1344455555555432 12111111111111111111 2233444555555643 45556656565555554444
Q ss_pred HHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 290 SVYDDMTKK----G----------VIPDEV--FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (601)
Q Consensus 290 ~~~~~m~~~----~----------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (601)
+++...... + -.|+.. ++..+...|...|++++|++++++.++.. +-.+..|..-...|-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCC
Confidence 555444321 0 123332 33455666777788888888888777764 333667777777777888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHhhcCCH
Q 007510 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TY--SILLVACERKDDV 425 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~--~~ll~a~~~~g~~ 425 (601)
++.+|.+.++...... .-|...-+-.+..+.++|+.++|.+++....+.+..|-.. .| .-...+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8888888877777654 2344555556667777888888888777776655433221 12 2345677788888
Q ss_pred HHHHHHHHHHHH
Q 007510 426 EVGLMLLSQAKE 437 (601)
Q Consensus 426 ~~a~~~~~~~~~ 437 (601)
..|++-|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 888777766654
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.1e-06 Score=78.15 Aligned_cols=426 Identities=12% Similarity=0.083 Sum_probs=253.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC
Q 007510 29 LHSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90 (601)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 90 (601)
...++.+.+...+..|.+.|....+... .+.+.......+..+...++-+.|......+|+.
T Consensus 47 ~yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t 126 (564)
T KOG1174|consen 47 LYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPT 126 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCcc
Confidence 4455666677788888888877665321 1222223333444445556667777777777643
Q ss_pred C-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 91 T-LSTFNMLMSVCASSKD-SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (601)
Q Consensus 91 ~-~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (601)
- ..-.|.|+..+-+.|- -.++.--+......- +.-.. .|.+..+.+ +..+...=..|-...++|+..+...-
T Consensus 127 ~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~aL~----~i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~w 200 (564)
T KOG1174|consen 127 LRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-PMALQ----VIEALLELG-VNGNEINSLVMHAATVPDHFDWLSKW 200 (564)
T ss_pred ccchhHHHHHHHHHhccccccHHHHhhhHHHHhc-chHHH----HHHHHHHHh-hcchhhhhhhhhheecCCCccHHHHH
Confidence 2 3334444444433332 112222222222211 10111 111111111 00000001112222234444444444
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHH-HHHHHHHH
Q 007510 169 IDGCAK--AGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKAC 244 (601)
Q Consensus 169 i~~~~~--~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~ll~~~ 244 (601)
+.+++. .++...|...+-.+... -++-|......+.+.+...|+.++|...|+.... +.|+..+ .....-.+
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL 276 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLL 276 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHH
Confidence 444443 45555565555544433 3455677788899999999999999999998764 3554332 22223334
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (601)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (601)
.+.|+.++...+...+.... ..+...|..-........+++.|+.+-.+.++.+.. +...|-.=...+...|+.++|.
T Consensus 277 ~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~ 354 (564)
T KOG1174|consen 277 GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAV 354 (564)
T ss_pred HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHH
Confidence 67888888888777776543 233344555556667788999999998888776443 3444544455677889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH-HcCCChhHHHHHHHHHHh
Q 007510 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI-TAL-CDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~-~~~g~~~~A~~~~~~m~~ 402 (601)
-.|+...... +.+...|..|+..|...|++.+|.-+-+..... ++.+..+.+.+. ..+ .....-++|.+++++-.+
T Consensus 355 IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~ 432 (564)
T KOG1174|consen 355 IAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK 432 (564)
T ss_pred HHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc
Confidence 9999887764 567889999999999999999987766654432 133445554442 222 233345789999988776
Q ss_pred CCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhhhhhhhcc
Q 007510 403 LGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472 (601)
Q Consensus 403 ~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~ 472 (601)
+.|+. ...+.+...|...|..+.++.+++.... ..||...-+.|-+.+.- .+.++.+...+....+
T Consensus 433 --~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 433 --INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred --cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 57774 4567777889999999999999998887 56788777777776543 3555544444333333
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=3.3e-06 Score=77.73 Aligned_cols=379 Identities=13% Similarity=0.091 Sum_probs=224.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCCh
Q 007510 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (601)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 108 (601)
..-++.+.++..|+.+++--...+. .....+..-++..+-..|++++|+..+..+. .++...|-.+.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5567788888899988876654432 1222333344444556788999998887653 45566666666666667788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
.+|.++-... +.++..-..|+...-+.++-++-..+.+.+.. +..--.+|.+..-..-.+++|+++|.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8887765543 22333444455566677777776666666543 2233344555544456678888888887
Q ss_pred HhCCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh--cCCh---------------
Q 007510 189 RSKNVKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN--AGQV--------------- 250 (601)
Q Consensus 189 ~~~g~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~--------------- 250 (601)
... .|+-...|.-+ -+|.+..-++-+.+++.-.... ++.+....+.......+ .|+.
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 765 45555555433 3556666666666666665543 22223333332222222 1211
Q ss_pred ------------------hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 251 ------------------DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (601)
Q Consensus 251 ------------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (601)
+.|.+++--+.+. -+.....|+-.|.+.+++.+|..+.+++.- ..|-......+..
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~ 326 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF 326 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence 1222222111111 134555677778999999999998776532 2343333333332
Q ss_pred HH-Hh----cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 007510 313 FA-GH----AGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (601)
Q Consensus 313 ~~-~~----~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 386 (601)
+. .+ ....+-|.+.|+..-..+..-|.. --.++...+.-..++++.+..+..+..--...|...+| +..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHH
Confidence 21 11 123455666666555544333322 22344555566677888888888887654455555555 7889999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhhcCCHHHHHHHHHH
Q 007510 387 GDQLPKTMEVLSDMKSLGLCPNTITYSI-LLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~ 434 (601)
.|.+.+|.++|-+.....++ |..+|.+ |.+.|.+.+.++.|++++-+
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 99999999999887654333 6667765 45677889999998877643
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=1.6e-07 Score=94.15 Aligned_cols=169 Identities=13% Similarity=0.141 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 007510 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----NV- 193 (601)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 193 (601)
..+...|...|...|+++.|..+++...+. |. .|.+. ..+.+...|...+++.+|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556777788888888888877776543 21 12222 2233555667777777777777766531 21
Q ss_pred CC-CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCC---CCC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---
Q 007510 194 KP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEV---HPV-DPDH-ITIGALMKACANAGQVDRAREVYKMIHKYN--- 264 (601)
Q Consensus 194 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~-~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--- 264 (601)
.| -..+++.|..+|.+.|++++|...+++..... .+. .|.+ ..++.+...+...+++++|..++....+.-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 12345556666777777766666655543210 011 1111 123344444555555555555554433210
Q ss_pred CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 265 IK----GTPEVYTIAINCCSQTGDWEFACSVYDDM 295 (601)
Q Consensus 265 ~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m 295 (601)
.. .-..+++.|...|.+.|++++|.++|++.
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 00 11234555555555555555555555544
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.13 E-value=1.3e-05 Score=79.62 Aligned_cols=464 Identities=11% Similarity=0.155 Sum_probs=291.8
Q ss_pred CCCCCCCCCCCCCCCChhhhHHHHHHHH--hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHHHH--------H------
Q 007510 9 LQFPYPNGKHANYAHDVSEQLHSYNRLI--RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNV--------C------ 71 (601)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~~l~~~--------~------ 71 (601)
+..||..-+..+ +-++.+|-.+| +.|... .-..+|++..+.- |-+..+....++. |
T Consensus 12 EDvpfEeEilRn-----p~svk~W~RYIe~k~~sp~k~~~~lYERal~~l--p~sykiW~~YL~~R~~~vk~~~~T~~~~ 84 (835)
T KOG2047|consen 12 EDVPFEEEILRN-----PFSVKCWLRYIEHKAGSPDKQRNLLYERALKEL--PGSYKIWYDYLKARRAQVKHLCPTDPAY 84 (835)
T ss_pred cccchHHHHHcC-----chhHHHHHHHHHHHccCChHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHhhccCCCChHH
Confidence 455555544433 56788898888 556554 4556778888764 3333222222211 1
Q ss_pred -hhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 72 -KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFEV 149 (601)
Q Consensus 72 -~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (601)
.-++.++.++.++.+|| ..|-..+..+.++|+...-...|+..... -+.-...+|...+......+-++-+..+
T Consensus 85 ~~vn~c~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred HHHHHHHHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 01234555555555554 46888888899999999999999887754 2233456788889888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHhccCCHH---HHHHHH
Q 007510 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVVFNALITACGQSGAVD---RAFDVL 220 (601)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~---~A~~~~ 220 (601)
|+..++ .++..-+--|..+++.+++++|-+.+...... ..+.+...|..+-+..++.-+.- ....++
T Consensus 161 yrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii 236 (835)
T KOG2047|consen 161 YRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII 236 (835)
T ss_pred HHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH
Confidence 999985 45556788888999999999999999887643 12445666777766666554322 233444
Q ss_pred HHhhhCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----------------c
Q 007510 221 AEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----------------T 282 (601)
Q Consensus 221 ~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------~ 282 (601)
..+. +.-+| ...|++|..-|.+.|.+++|..+|++....-.. ..-|+.+-+.|.. .
T Consensus 237 R~gi----~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~ 310 (835)
T KOG2047|consen 237 RGGI----RRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEES 310 (835)
T ss_pred Hhhc----ccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4443 23455 457899999999999999999999987765221 1222223233321 1
Q ss_pred CC------HHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CH
Q 007510 283 GD------WEFACSVYDDMTKKGV-----------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV------GI 339 (601)
Q Consensus 283 g~------~~~a~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~ 339 (601)
|+ ++-...-|+.+..... .-++..|..-+. ...|+..+-...+.++.+.- .| -.
T Consensus 311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~ 387 (835)
T KOG2047|consen 311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPG 387 (835)
T ss_pred cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChh
Confidence 11 2222333333332211 012333333332 23567778888888877641 22 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----------CCC
Q 007510 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL----------GLC 406 (601)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------g~~ 406 (601)
..|..+...|-..|+++.|+.+|++..+...+.- ..+|......=.++.+++.|+++.++.... |-.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 4688899999999999999999999987543221 345666666777889999999998887531 111
Q ss_pred C-------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhhHHHHHHhhhhhhhccCC----
Q 007510 407 P-------NTITYSILLVACERKDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG---- 474 (601)
Q Consensus 407 p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~-p~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~---- 474 (601)
| +...|+.+++.-...|-++....+++++++..+. |.... | |+--+++-..++++.+.|..+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~-N-----yAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII-N-----YAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH-H-----HHHHHHhhHHHHHHHHHHHcCCccC
Confidence 1 1234666666667788888899999999876543 33222 2 111133444444444444444
Q ss_pred -CccchhhHHHH---------------HHHHHHHHHHcCCCCcHH
Q 007510 475 -RPQIENKWTSL---------------ALMVYREAIVAGTIPTVE 503 (601)
Q Consensus 475 -~~~~~~~~~~~---------------a~~~~~~m~~~g~~p~~~ 503 (601)
-|..-..|++. |-.+|++.++ |+.|...
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 23344567652 8888988887 7777764
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=8e-08 Score=96.30 Aligned_cols=240 Identities=16% Similarity=0.127 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhhhC---CCC-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhc-----C--
Q 007510 197 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHIT-IGALMKACANAGQVDRAREVYKMIHKY-----N-- 264 (601)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-- 264 (601)
..+...+...|...|+++.|..++...... ..| ..|...+ .+.+...|...+++++|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446666888899999999999988876542 112 1233333 334667888899999999999887653 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 007510 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVI-PDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ---G 334 (601)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~-p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~ 334 (601)
.+.-..+++.|...|.+.|++++|...+++..+ .|.. |.. ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122245677888889999999998888876542 1222 222 24566777888899999999999876542 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH--
Q 007510 335 ISV----GIISYSSLMGACSNAKNWQKALELYEHMKSI----KL--KP-TVSTMNALITALCDGDQLPKTMEVLSDMK-- 401 (601)
Q Consensus 335 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 401 (601)
+.+ -..+++.|...|.+.|++++|.++|+.+... +- .+ ....++.|...|.+.+.+.+|.++|.+..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2457899999999999999999999987742 11 11 23567788899999999999999988743
Q ss_pred --hCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 402 --SLGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 402 --~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
..|. .|+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3332 233 3568899999999999999999998776
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=4e-06 Score=83.36 Aligned_cols=350 Identities=13% Similarity=0.113 Sum_probs=237.1
Q ss_pred hhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007510 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (601)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~ 149 (601)
..+++...+++.+.+. +....+.....-.+...|+-++|....+.-.+.. ..+.+.|..+.-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3466666666665543 2234455555555677899999999988877754 44678899998888888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCC
Q 007510 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (601)
Q Consensus 150 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 229 (601)
|......+ +.|...|.-+.-.-++.++++.......++.+.. +.....|..+..++.-.|+...|..++++..+...
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~- 174 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN- 174 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 99999876 5678888887777788899988888877777652 33556788888888889999999999999887532
Q ss_pred CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 230 VDPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (601)
Q Consensus 230 ~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 303 (601)
-.|+...+.-.. ....+.|.++.|.+.+......- ......-.+-...+.+.+++++|..++..++..+ ||
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pd 251 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PD 251 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--ch
Confidence 345555544332 33467788888888876654431 2222334456677889999999999999999874 56
Q ss_pred HHHHHHHHH-HHHhcCCHHHHH-HHHHHHH----------------------------------HCCCCCCHHHHHHHHH
Q 007510 304 EVFLSALID-FAGHAGKVEAAF-EILQEAK----------------------------------NQGISVGIISYSSLMG 347 (601)
Q Consensus 304 ~~~~~~li~-~~~~~g~~~~a~-~~~~~~~----------------------------------~~~~~~~~~~~~~li~ 347 (601)
..-|...+. ++.+-.+.-++. .+|.... +.|+++ ++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 665554444 333222222222 3333332 233221 2223333
Q ss_pred HHHhcCCHHHHHHHHHHHH--------hCC----------CCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007510 348 ACSNAKNWQKALELYEHMK--------SIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (601)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~--------~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (601)
.|-.....+ +.+++. ..| -+|....|+ .++..|-+.|+++.|...++.... ..|
T Consensus 329 Lyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTP 402 (700)
T KOG1156|consen 329 LYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTP 402 (700)
T ss_pred HHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCc
Confidence 232211111 222221 111 156666665 467888899999999999999987 467
Q ss_pred CH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 408 NT-ITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 408 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
+. .-|..=.+.+.+.|++++|..++++..+.
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 75 45777778899999999999999998875
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=3.4e-07 Score=87.99 Aligned_cols=219 Identities=11% Similarity=-0.024 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (601)
Q Consensus 211 g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (601)
+..+.++.-+.++.... ...|+ ...|..+...|.+.|+.++|...|++..+.+ +.+...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 44556666666665431 22222 2446666667778888888888888887765 55677888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (601)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (601)
...|++..+.... +...+..+..++...|++++|.+.++...+.. |+..........+...++.++|...|++....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 8888888776443 45566777777777888888888888877764 22221222222344567788888888665432
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 007510 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---G--LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (601)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g 439 (601)
. .|+ .|.. .......|+..++ +.+..+.+. . +.| ....|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-Ccc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 222 2221 2222334555444 344444421 0 111 23568888888888999999999998888744
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=4.5e-07 Score=87.09 Aligned_cols=126 Identities=15% Similarity=0.048 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (601)
.|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|...|++..+.. +-+..+|..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45555555566666666666666655543 3345566666666666666666666666665442 223445555555555
Q ss_pred ccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007510 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (601)
Q Consensus 209 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (601)
..|++++|.+.|+..... .|+..........+...++.++|...|...
T Consensus 144 ~~g~~~eA~~~~~~al~~----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD----DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 566666666666655542 232211111112223345556666666443
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=9.3e-06 Score=74.84 Aligned_cols=400 Identities=11% Similarity=0.087 Sum_probs=239.3
Q ss_pred hhHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 007510 27 EQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (601)
Q Consensus 27 ~~~~~~~~l~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 104 (601)
.++..|-..+ +-|++++|...+.-+...+-.|....+. ++-..--.|.+.+|..+-.+.+. ++-.--.++...-+
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn--LAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN--LACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh--HHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 4667776666 8899999999999887765433222222 22222234778888887766553 34444455566667
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHH
Q 007510 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI-DGCAKAGQVAKAFG 183 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~ 183 (601)
.++-++-..+.+.+... ..---+|.......-.+++|+++|..+... .|+-...|.-+ -+|.+..-++-+.+
T Consensus 134 lndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqe 206 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQE 206 (557)
T ss_pred hCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHH
Confidence 77777777776666532 122334444544555678888988888765 35555555433 35667777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcc--CCH---------------------------------HHHHHHHHHhhhCCC
Q 007510 184 AYGIMRSKNVKPDRVVFNALITACGQS--GAV---------------------------------DRAFDVLAEMNAEVH 228 (601)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~---------------------------------~~A~~~~~~~~~~~~ 228 (601)
++.-..+. ++-++...|....-..+. |+. +.|++++-.+..
T Consensus 207 vl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--- 282 (557)
T KOG3785|consen 207 VLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--- 282 (557)
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh---
Confidence 77766654 222333444332222221 221 122222221111
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHHHHCCCC
Q 007510 229 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-------GDWEFACSVYDDMTKKGVI 301 (601)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------g~~~~a~~~~~~m~~~~~~ 301 (601)
.-|. .-..|+--|.+.+++.+|..+...+. +.++.-|-.-.-.+... .+..-|.+.|+-.-..+..
T Consensus 283 -~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 283 -HIPE--ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALE 355 (557)
T ss_pred -hChH--hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 1122 22335556888999999988766543 22233222222222222 3456677777666555543
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 007510 302 PDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN-A 379 (601)
Q Consensus 302 p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~ 379 (601)
-|.. .-.++.+.+.-..++++.+-.+..+..--...|...+ .+..+++..|++.+|.++|-++....+ .|..+|. .
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~ 433 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSM 433 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHH
Confidence 3322 2233444455556788888888887765434444444 578899999999999999998875443 3455665 4
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (601)
|.++|.+++.++-|..++-++.. +.+..+.. .+..-|-+.+.+--|.+.|.++.. .+|++..|..=-.+|
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWeGKRGAC 504 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWEGKRGAC 504 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccCCccchH
Confidence 56889999999999877665542 33444444 445678999999999999998887 567777776544444
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.03 E-value=5.5e-07 Score=78.17 Aligned_cols=199 Identities=16% Similarity=0.070 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 007510 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (601)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (601)
...|.-.|.+.|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+....|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4445556777777777777777777664 3345667777777777777777777777776653 3345566666666777
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (601)
Q Consensus 210 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (601)
.|++++|.+.|++.... +...--..+|..+.-+..+.|+.+.|...|++..+.+ +..+.+.-.+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777776653 1222223466666666667777777777777777665 444556666777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (601)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (601)
..++.....+. ++..++-..|..-...|+.+.+-+.=.++.+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777666655 56666666666666677766666555554443
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=6.4e-07 Score=77.75 Aligned_cols=198 Identities=11% Similarity=0.048 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (601)
+...|.-.|...|+...|..-+++..+.+ +.+..+|..+...|.+.|..+.|.+-|++....... +....|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34456667888888888888888888876 666778888888888888888888888887776544 5556677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007510 316 HAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (601)
..|++++|...|++...... .--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 88888888888887776532 2234567777777778888888888888877754 223456667777788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 395 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
.+++.....+. ++..+....|+.-...|+.+.+-++=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88887776653 7777777777777778887777766666554
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=5.3e-06 Score=82.77 Aligned_cols=304 Identities=15% Similarity=0.025 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---
Q 007510 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA--- 202 (601)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~--- 202 (601)
..|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..... +.|...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 3444455555555666665555555443211 1111 111222334455677777777777766542 223333331
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 007510 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (601)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 281 (601)
........+..+.+.+.+.... +..|+ ......+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWA----PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHhcccccCchhHHHHHhccC----cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 1111122344444444444311 22333 3334445556777778888888887777765 5556667777777778
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCC
Q 007510 282 TGDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKN 354 (601)
Q Consensus 282 ~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~ 354 (601)
.|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 8888888888777665432 1222 2344566677777888888888877654321 1111111 1 22333333443
Q ss_pred HHHHHHH---HHHHHhCCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHhhc
Q 007510 355 WQKALEL---YEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--N------TITYSILLVACERK 422 (601)
Q Consensus 355 ~~~A~~~---~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~------~~t~~~ll~a~~~~ 422 (601)
...+.+. ......... ............++...|+.++|..++..+......+ . .........++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 3222222 111111100 1111222346667778888999999988876532110 1 11222233445688
Q ss_pred CCHHHHHHHHHHHHH
Q 007510 423 DDVEVGLMLLSQAKE 437 (601)
Q Consensus 423 g~~~~a~~~~~~~~~ 437 (601)
|+.++|.+.+.....
T Consensus 321 g~~~~A~~~L~~al~ 335 (355)
T cd05804 321 GNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998887765
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=8e-06 Score=80.43 Aligned_cols=395 Identities=12% Similarity=0.100 Sum_probs=218.1
Q ss_pred CCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 007510 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (601)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 100 (601)
+|++...--.-.-+||+.+++++|+.+.+.=.... ..+...+.... ...+.+..++|+..++...+.+..+...-..
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAY-c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAY-CEYRLNKLDEALKTLKGLDRLDDKLLELRAQ 118 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHH-HHHHcccHHHHHHHHhcccccchHHHHHHHH
Confidence 45555555555567889999999996655322111 11111111111 1234578999999999666666667777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcC
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI---DGCAKAG 176 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li---~~~~~~g 176 (601)
.+.+.|++++|+.+|+.+.+.+... +...-..++.+-.. -.+. +.+.... .| ..+|..+- -.+...|
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~q~v~~---v~-e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LLQSVPE---VP-EDSYELLYNTACILIENG 189 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HHHhccC---CC-cchHHHHHHHHHHHHhcc
Confidence 8999999999999999998775321 11111112111110 1111 2222221 22 22333322 3445677
Q ss_pred CHHHHHHHHHHHHhC-------C------CCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHH-HHHH
Q 007510 177 QVAKAFGAYGIMRSK-------N------VKPDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI-GALM 241 (601)
Q Consensus 177 ~~~~A~~~~~~m~~~-------g------~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~~ll 241 (601)
++.+|+++++..... + ++-...+. ..|.-.+-..|+..+|.+++.........-.|...++ |.++
T Consensus 190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLv 269 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLV 269 (652)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchh
Confidence 788888777776211 1 00001111 1233345566778888887777665432111111111 1111
Q ss_pred HHHHhc----------------------------------------------CChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 007510 242 KACANA----------------------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (601)
Q Consensus 242 ~~~~~~----------------------------------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (601)
. .... +..+.+.++-.... +-.|. ..+.++
T Consensus 270 a-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~l 345 (652)
T KOG2376|consen 270 A-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSPE-SLFPIL 345 (652)
T ss_pred h-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCch-HHHHHH
Confidence 1 1100 11111111111110 11222 333444
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHH
Q 007510 276 INCCS--QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSL 345 (601)
Q Consensus 276 i~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l 345 (601)
+.... +...+.++.+++...-+....-.....-..+......|+++.|.+++. .+.+.+..| .+...+
T Consensus 346 l~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~ai 423 (652)
T KOG2376|consen 346 LQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAI 423 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHH
Confidence 43332 223567788887777665433234566667777888999999999999 555555444 445667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007510 346 MGACSNAKNWQKALELYEHMKSI--KLKPTVS----TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (601)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 419 (601)
+..|.+.++-+.|..++...... .-.+... +|.-+...-.+.|+-++|..+++++.+. -++|..+...++.+|
T Consensus 424 v~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~ 502 (652)
T KOG2376|consen 424 VALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAY 502 (652)
T ss_pred HHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHH
Confidence 77888888877787777766531 0012222 3333444445789999999999999985 367888999999999
Q ss_pred hhcCCHHHHHHHHHHH
Q 007510 420 ERKDDVEVGLMLLSQA 435 (601)
Q Consensus 420 ~~~g~~~~a~~~~~~~ 435 (601)
++. +++.|..+-..+
T Consensus 503 ~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 503 ARL-DPEKAESLSKKL 517 (652)
T ss_pred Hhc-CHHHHHHHhhcC
Confidence 876 456776665443
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=1.3e-05 Score=81.45 Aligned_cols=374 Identities=14% Similarity=0.040 Sum_probs=210.1
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 007510 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTL 133 (601)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~l 133 (601)
.|+..+...+.-.....|++..+.+.|++..+ .....|+.+-..+...|.-..|..+++.-......|+ ...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35666655555556677889999999987543 3456788888888888888888888877654432243 3333333
Q ss_pred HHHHH-hcCChhHHHHHHHHHHHC--C--CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCH
Q 007510 134 ITTCA-KSGKVDAMFEVFHEMVNA--G--IEPNVHTYGALIDGCAKA-----------GQVAKAFGAYGIMRSKNVKPDR 197 (601)
Q Consensus 134 i~~~~-~~g~~~~a~~~~~~m~~~--g--~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~ 197 (601)
-..|. +.+.+++++.+-.+.... + -......|..+.-+|... ....++++.+++..+.+ +.|.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 33333 346666766666665541 1 022344455555555431 23567777777776654 2222
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCC----------
Q 007510 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIK---------- 266 (601)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~---------- 266 (601)
.....+.--|+..++++.|++...+..+-+. ..+...|..+.-.+...+++.+|+.+.+..... +..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~--~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNR--GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 2222333346666778888888777765422 345556666666677777777777777655432 110
Q ss_pred --------CCHHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHH--------HHCC--------
Q 007510 267 --------GTPEVYTIAINCCSQT-----------------------GDWEFACSVYDDM--------TKKG-------- 299 (601)
Q Consensus 267 --------~~~~~~~~li~~~~~~-----------------------g~~~~a~~~~~~m--------~~~~-------- 299 (601)
....+...++..+-.. ++..++.+..+.+ ...|
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0011122222211100 0111111111110 0000
Q ss_pred -C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007510 300 -V--IPD------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (601)
Q Consensus 300 -~--~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 370 (601)
. .|+ ...|......+.+.+..++|...+.+..+.. +.....|......+...|.+++|.+.|.......
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld- 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD- 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-
Confidence 0 011 1123344445556666666666666655543 4455566666666777777777777777666543
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 371 KPTVSTMNALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
+-++.+..++...+.+.|+..-|.. ++.++.+.+ +-+...|..+...+.+.|+.+.|.+.|....+
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 2235666777777777777666666 777777643 33466777777777777777777777766654
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=6.8e-06 Score=81.96 Aligned_cols=302 Identities=12% Similarity=0.019 Sum_probs=145.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGL-KADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
.|..+...+...|+.+.+...+....+... .++.. ........+...|++++|.+.+++..+.. +.|...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344444444455555555444444433221 11211 11122233455666677777666665542 223333332 111
Q ss_pred HH----hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 007510 172 CA----KAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (601)
Q Consensus 172 ~~----~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 246 (601)
+. ..+....+.+.+... ....|+ ......+...+...|++++|...+++.... .+.+...+..+...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL---NPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHH
Confidence 21 233344444444331 111222 223334445566667777777777776653 12334455566666777
Q ss_pred cCChhHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCC
Q 007510 247 AGQVDRAREVYKMIHKYNI-KGTP--EVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPDEVFL-S--ALIDFAGHAGK 319 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~ 319 (601)
.|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 7777777777766655431 1121 2344566667777777777777777653322 1111111 1 22222233333
Q ss_pred HHHHHHH---HHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C-----CHHHHHHHHHHHHcC
Q 007510 320 VEAAFEI---LQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK---P-----TVSTMNALITALCDG 387 (601)
Q Consensus 320 ~~~a~~~---~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~-----~~~~~~~li~~~~~~ 387 (601)
...+... ........ .............++...|+.+.|..+++.+...... - .+...-...-++...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 2222222 11111110 0111122224566778888899999998887653211 0 111122223345578
Q ss_pred CChhHHHHHHHHHHh
Q 007510 388 DQLPKTMEVLSDMKS 402 (601)
Q Consensus 388 g~~~~A~~~~~~m~~ 402 (601)
|+.++|.+++.+...
T Consensus 321 g~~~~A~~~L~~al~ 335 (355)
T cd05804 321 GNYATALELLGPVRD 335 (355)
T ss_pred CCHHHHHHHHHHHHH
Confidence 899999998887664
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=3.6e-05 Score=87.08 Aligned_cols=337 Identities=9% Similarity=-0.040 Sum_probs=208.4
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--C----CCC--HHHHHHHHHHHH
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--I----EPN--VHTYGALIDGCA 173 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~~~--~~~~~~li~~~~ 173 (601)
....|+++.+...++.+.......+..........+...|+++++..++......- . .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44567777766666654221111122223344555667899999999888765421 0 111 112223334556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCC---CHHHHHHHHHHHHh
Q 007510 174 KAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACAN 246 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~ 246 (601)
..|++++|...+++....-...+. ...+.+...+...|++++|...+.+.........+ ...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999987653111121 23455556677889999999998887642111111 12344556677888
Q ss_pred cCChhHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHH
Q 007510 247 AGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPD--EVFLSALIDFAG 315 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~~~li~~~~ 315 (601)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988776542 211 1 1234555666777889999999999886542 11122 234444556777
Q ss_pred hcCCHHHHHHHHHHHHHCC--CCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHc
Q 007510 316 HAGKVEAAFEILQEAKNQG--ISVGII--S--YSSLMGACSNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCD 386 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~ 386 (601)
..|+.+.|...+....... ...... . ....+..+...|+.+.|...+............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875421 111111 0 011224456688999999998776542211111 113456777889
Q ss_pred CCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 387 GDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 387 ~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
.|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999987642 33322 245666777888999999999999998864
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=9.4e-05 Score=68.18 Aligned_cols=314 Identities=15% Similarity=0.143 Sum_probs=179.8
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHH
Q 007510 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTL 133 (601)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l 133 (601)
|....-|.-+..-+...|++.+|+..|....+.|+..|.++.+ .|...|+..-|+.=+....+. +||-.. -..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3444555556666666677888887777776666666665543 566777777777777777654 565432 1222
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007510 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (601)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (601)
...+.+.|.+++|..-|+.+++. .|+..+- ..++.+.-..++- ......+..+.-.|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~--~~s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH--EPSNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc--CCCcchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhcCCch
Confidence 34556777778887777777765 3322111 1111111111111 1112233344556777
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (601)
Q Consensus 214 ~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (601)
..|+.....+.+. .+-|...+..-..+|...|.+..|+.=+....+.. ..++..+.-+-..+...|+.+.++...+
T Consensus 172 ~~ai~~i~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 172 QNAIEMITHLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhHHHHHHHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777777777653 24455566666777778888887777776666654 4455666666777777788888877777
Q ss_pred HHHHCCCCCCHHH----HHHH---H------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHH
Q 007510 294 DMTKKGVIPDEVF----LSAL---I------DFAGHAGKVEAAFEILQEAKNQGISVGIIS---YSSLMGACSNAKNWQK 357 (601)
Q Consensus 294 ~m~~~~~~p~~~~----~~~l---i------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 357 (601)
+.++.+ ||... |..+ . ......+++.++.+..+...+......... +..+-.+|...|++.+
T Consensus 248 ECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e 325 (504)
T KOG0624|consen 248 ECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE 325 (504)
T ss_pred HHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence 776653 34321 1111 0 112234555555555555555432212222 2334445556666777
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 358 ALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 358 A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
|++.-.++.+. .|+ +.++.--..+|.-...+++|+.-|+...+
T Consensus 326 AiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 326 AIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 77766666653 333 55666666666666667777777776665
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=4.7e-05 Score=77.54 Aligned_cols=421 Identities=13% Similarity=0.069 Sum_probs=225.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007510 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (601)
Q Consensus 122 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 201 (601)
.+.-|...|..|.-++..+|+++.+-+.|++....- --....|+.+...|...|.-..|..+++.-....-.|+..+--
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 445678888888888889999999999998876432 2356678888888888898888888888765443234433333
Q ss_pred HHH-HHHh-ccCCHHHHHHHHHHhhhCCCCC--CCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHhcCCC
Q 007510 202 ALI-TACG-QSGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKACANA-----------GQVDRAREVYKMIHKYNIK 266 (601)
Q Consensus 202 ~li-~~~~-~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~ 266 (601)
.++ ..|. +.+..++++.+-.+......+. ......+..+.-+|... ....++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 333 3333 3466666666555544311011 11223444444444321 12456677777777776 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (601)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 346 (601)
.|+.+...+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.....- ..|......=+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 44444444555577888899999999888887666678888888888888889999998888765431 11111111112
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----------------------------CCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007510 347 GACSNAKNWQKALELYEHMKSI----------------------------KLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (601)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~~~----------------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (601)
..-..-++.+++......+... .......++..+..-.. -+.+.+..-.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~- 631 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSEL- 631 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhccccc-
Confidence 2222344555544443333210 00001122222211111 0000000000
Q ss_pred HHHhCCCCCC--------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhHHHHHHhhhhhh
Q 007510 399 DMKSLGLCPN--------TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMCSRRYEKARTLNEHVL 469 (601)
Q Consensus 399 ~m~~~g~~p~--------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~-~~~~~li~~~~~~~~~a~~~~~~~~ 469 (601)
.|...-+.|. ...|......+.+.+..++|...+.+..+. .|-. .+|.-. ++.+..-+..+++..
T Consensus 632 ~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~----G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 632 KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLR----GLLLEVKGQLEEAKE 705 (799)
T ss_pred ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHh----hHHHHHHHhhHHHHH
Confidence 0222212222 123555666778888888888888877663 2221 112111 111222222333322
Q ss_pred hccCCCccchhhHHHHHHHHHHHHHHcCCCCcHHHHHHHHhcc--CCC--CchhHHhhHHHhhCCCcc-ccccccccccc
Q 007510 470 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL--QLP--YNADIRERLVENLGVSAD-ALKRSNLCSLI 544 (601)
Q Consensus 470 ~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i 544 (601)
.| ...+ -+.|+++-....+|-+ ..| +..+....++.+..+.|. ++.+-.++++.
T Consensus 706 af-------------------~~Al--~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 706 AF-------------------LVAL--ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred HH-------------------HHHH--hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 22 1111 1223332222222111 111 111122234556677775 45555567777
Q ss_pred cccCCchhHHHHHHHHHHhCCCCCccccCCCCee
Q 007510 545 DGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVV 578 (601)
Q Consensus 545 ~~~g~~~~~a~~~~~~~~~~g~~p~~~~~~~~~~ 578 (601)
...|..+ +|...|.-+.+ +.+.+|..|.+.+
T Consensus 765 k~~Gd~~-~Aaecf~aa~q--Le~S~PV~pFs~i 795 (799)
T KOG4162|consen 765 KKLGDSK-QAAECFQAALQ--LEESNPVLPFSNI 795 (799)
T ss_pred HHccchH-HHHHHHHHHHh--hccCCCccccccc
Confidence 7778754 78899999988 7888888876643
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.78 E-value=0.00011 Score=67.64 Aligned_cols=317 Identities=12% Similarity=0.079 Sum_probs=196.3
Q ss_pred CCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCCHH-HHHH
Q 007510 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLS-TFNM 97 (601)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~-~~~~ 97 (601)
.|-++......=+.|..+|++.+|+..|....+-+ |.+......-...+...|.-..|+.=|..+. .||-. .-..
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 44556666667788889999999999999999876 6666555555556666676666766666554 33322 2223
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHH------------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKL------------YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 163 (601)
-...+.+.|.+++|..=|+.+.+...... ... ....+..+...|+...|+.....+++.. +.|..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 34568899999999999999987642111 111 1223334556678888888888887764 56777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 243 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~ 243 (601)
.|..-..+|...|++..|+.-++...+.. .-++.++.-+-..+...|+.+.++...++..+ +.||...+-..
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldpdHK~Cf~~--- 262 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDPDHKLCFPF--- 262 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCcchhhHHHH---
Confidence 78888888888888888877666655442 33555666666777778888888888777764 46765433211
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 007510 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---FLSALIDFAGHAGKV 320 (601)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~ 320 (601)
| ..+.+..+.++.|. .....++|.++++-.+...+........ .+..+-.++...|++
T Consensus 263 Y---KklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~ 323 (504)
T KOG0624|consen 263 Y---KKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF 323 (504)
T ss_pred H---HHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH
Confidence 1 11112222222221 1234455566666666655544332222 223333445556667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (601)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (601)
.+|++.-.++.+.. +.|+.++.--..+|.-...++.|+.-|+...+.
T Consensus 324 ~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 324 GEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77777666666543 334666666666776667777777777776654
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=3.5e-07 Score=86.51 Aligned_cols=150 Identities=21% Similarity=0.174 Sum_probs=74.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh----
Q 007510 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN---- 246 (601)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 246 (601)
.+...|++++|++++.+- .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~-~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI----DEDS-ILTQLAEAWVNLATG 179 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCH-HHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcH-HHHHHHHHHHHHHhC
Confidence 344455555555554322 13444444555555666666666666665432 2332 22223333222
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 007510 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFE 325 (601)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~ 325 (601)
...+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +..++..++......|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHH
Confidence 22456666666665543 2455566666666666666666666666665544333 444555555555555555 44555
Q ss_pred HHHHHHHC
Q 007510 326 ILQEAKNQ 333 (601)
Q Consensus 326 ~~~~~~~~ 333 (601)
.+.++...
T Consensus 258 ~l~qL~~~ 265 (290)
T PF04733_consen 258 YLSQLKQS 265 (290)
T ss_dssp HHHHCHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.8e-05 Score=73.84 Aligned_cols=386 Identities=13% Similarity=0.068 Sum_probs=229.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCC-HHHHHHHHHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~ 109 (601)
|..+..|+++.|+..|-+.+... |.|.+.+..-...+.+.|++++|++=-.+.. .|+ ...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 56678999999999999999877 6688777777777888899988876544332 232 457888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH---HHHHHHHHHCC---CCCCHHHHHHHHHHHH----------
Q 007510 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM---FEVFHEMVNAG---IEPNVHTYGALIDGCA---------- 173 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a---~~~~~~m~~~g---~~~~~~~~~~li~~~~---------- 173 (601)
+|+..|..-.+.. +.+...++.+.+++.......+. -.++..+...- .......|..++..+-
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999888764 45667777777777221100000 01111111100 0001112222222221
Q ss_pred hcCCHHHHHHHHHHH-----HhCC-------CCC------------C----------HHHHHHHHHHHhccCCHHHHHHH
Q 007510 174 KAGQVAKAFGAYGIM-----RSKN-------VKP------------D----------RVVFNALITACGQSGAVDRAFDV 219 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m-----~~~g-------~~p------------~----------~~~~~~li~~~~~~g~~~~A~~~ 219 (601)
...++..|...+... ...| ..| | ..-...+.++..+..+++.|.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 111112222211110 0001 111 0 11245577778888889999998
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG------TPEVYTIAINCCSQTGDWEFACSVYD 293 (601)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (601)
+...... ..+..-++....+|...|.+......-+...+.|... -...+..+..+|.+.++++.++..|.
T Consensus 247 y~~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 247 YAKALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 8887653 3444555666677888887777666655555444211 01122334456777888999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007510 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 373 (601)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 373 (601)
+.+.....|+..+ +....+++........-.+...-.. .-.=...+.+.|++..|.+.|.+++... +-|
T Consensus 323 kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~A~e-~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~D 391 (539)
T KOG0548|consen 323 KALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEKAEE-EREKGNEAFKKGDYPEAVKHYTEAIKRD-PED 391 (539)
T ss_pred HHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhHHHH-HHHHHHHHHhccCHHHHHHHHHHHHhcC-Cch
Confidence 8776555443322 2223344444333332222111111 1122456677888888888888877665 456
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
...|..-..+|.+.|.+..|+.-.+...+. .|+ ...|..=..++....+++.|.+.|.+.++.
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777888888888888888887777666663 444 344655566666777888888888777763
No 92
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=7e-07 Score=84.52 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH-HHHHHHH
Q 007510 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLL 432 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~ 432 (601)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +-+..|...++......|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 344555555554332 23444444555555555555555555555544321 11233444444444444444 3344444
Q ss_pred HHHHH
Q 007510 433 SQAKE 437 (601)
Q Consensus 433 ~~~~~ 437 (601)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.73 E-value=6.7e-05 Score=78.45 Aligned_cols=149 Identities=10% Similarity=0.038 Sum_probs=83.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHH
Q 007510 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (601)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 114 (601)
..+...|...|-+..+.+ +.-......++.+++...+...|.+.|++.- ..+...+......|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 344677777777777766 3444556667778887778888888888653 45666777888888888888888777
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 115 ~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
.-..-+.. ...-...|..+.-.|.+.++...|..-|+...+.. +.|...|..++.+|..+|++..|.++|.+..
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 32221110 00001112222223334444444444444444432 2344445555555555555555555554443
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.72 E-value=0.00015 Score=82.18 Aligned_cols=331 Identities=9% Similarity=0.006 Sum_probs=208.9
Q ss_pred hhHHHHHHHHHHhhCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHhc
Q 007510 73 SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KAD--CKLYTTLITTCAKS 140 (601)
Q Consensus 73 ~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~li~~~~~~ 140 (601)
..|+++.+...+..++. .+..........+...|++++|...++...+.-- .+. ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34566777777776641 2222333444556678999999999987754311 111 11222333456688
Q ss_pred CChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHhccC
Q 007510 141 GKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNV---KPD--RVVFNALITACGQSG 211 (601)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~g 211 (601)
|++++|...++.....-...+. ...+.+...+...|++++|...+++.....- .+. ..++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999987763111121 3456666777889999999999988764210 111 234455566788899
Q ss_pred CHHHHHHHHHHhhhCC--CCCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHhc
Q 007510 212 AVDRAFDVLAEMNAEV--HPVD--P-DHITIGALMKACANAGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQT 282 (601)
Q Consensus 212 ~~~~A~~~~~~~~~~~--~~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~ 282 (601)
++++|...+++..... .+.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 9999999887754421 1111 1 22334455566777899999999988765431 111 233455566778899
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 007510 283 GDWEFACSVYDDMTKKGVI-PDEVFL-----SALIDFAGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAK 353 (601)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 353 (601)
|++++|.+.+.+....... .....+ ...+..+...|+.+.|...+........... ...+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 9999999999887542111 011111 1122344567899999988776543221111 112346677888999
Q ss_pred CHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 007510 354 NWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (601)
+.++|...+++.... +..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999987642 22222 245666778888999999999999998875
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=1.4e-06 Score=85.53 Aligned_cols=218 Identities=13% Similarity=0.067 Sum_probs=160.4
Q ss_pred HhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (601)
Q Consensus 207 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (601)
+.+.|++.+|.-.|+....+. +-+...|..|.......++-..|+..+.++.+.+ +.+..+.-+|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 567788889888888887652 3456678888888888888888999999988887 677888888888999999989
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-----------HHHhcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 287 FACSVYDDMTKKGVIPDEVFLSALID-----------FAGHAGKVEAAFEILQEA-KNQGISVGIISYSSLMGACSNAKN 354 (601)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~-----------~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~ 354 (601)
.|++.++.-+...++ |..+.. .......+....++|-++ ...+..+|+.++..|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999888876554321 110000 011111223334444444 344445788888888888989999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHH
Q 007510 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLS 433 (601)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 433 (601)
+++|.+.|+...... +-|...||-|...++...+.++|+..|++.++ ++|+- .....|.-+|...|.+++|...|=
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999888754 34678899999999999999999999999888 67874 445556668999999999888776
Q ss_pred HHH
Q 007510 434 QAK 436 (601)
Q Consensus 434 ~~~ 436 (601)
.++
T Consensus 523 ~AL 525 (579)
T KOG1125|consen 523 EAL 525 (579)
T ss_pred HHH
Confidence 554
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=5.9e-05 Score=68.11 Aligned_cols=288 Identities=12% Similarity=0.040 Sum_probs=170.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC--CCHHHHHH-HHHHHHhcCC
Q 007510 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNM-LMSVCASSKD 107 (601)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~ 107 (601)
+.-.||+..++.+|++++..-.++. |.+..-...+.-.+....++..|...++++.. |...-|-. -...+.+.+.
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 4457899999999999999887776 55555555566666667789999999888652 33333322 2345667788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT--CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (601)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (601)
+..|+.+...|... |+...-..-+.+ ....+++..+..+.++.... -+..+.+...-...+.|+++.|.+-|
T Consensus 94 ~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 94 YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHH
Confidence 99999998887642 222222222222 23567888888888887643 24445555555566889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCC-----------CHH--------H-------HHH
Q 007510 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-----------DHI--------T-------IGA 239 (601)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------~~~--------~-------~~~ 239 (601)
+...+-+--.....||.-+ +..+.|+.+.|++...++...+-.-.| |+. . +|.
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 8887754344566777554 455678889999988887764321111 111 1 111
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 240 LMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (601)
-...+.+.|+.+.|.+.+..|+-+. ...|+++...+.-. --.+++.+..+-+.-++..++- ...||..++-.||++.
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhH
Confidence 1222345566666666665554332 22344444333211 1223344444444444444433 3455666666666666
Q ss_pred CHHHHHHHHHH
Q 007510 319 KVEAAFEILQE 329 (601)
Q Consensus 319 ~~~~a~~~~~~ 329 (601)
-++.|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 66666665543
No 97
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=4.1e-08 Score=58.98 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 157 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 98
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.65 E-value=2.2e-05 Score=84.72 Aligned_cols=232 Identities=12% Similarity=0.040 Sum_probs=171.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 007510 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (601)
Q Consensus 194 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (601)
+-+...|-..+.-....++.++|.++.++....- ++. --...|.++++.-..-|.-+...++|+++.+.. ..-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI-N~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTI-NFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC-CcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 4456677778888888899999999988887531 111 113467777777777788888889999888764 2235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGAC 349 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~ 349 (601)
+|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.+..+-+.|..++.++.+.-.+ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 788889999999999999999999987633 36678888888888888888999999888765211 1345556666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHH
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (601)
.+.|+.+.++.+|+.....- +.....|+..|+.-.++|+.+.+..+|++....++.|-. ..|...+..=...|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 88999999999999887653 445678999999999999999999999999888877653 445555544444555444
Q ss_pred HHH
Q 007510 428 GLM 430 (601)
Q Consensus 428 a~~ 430 (601)
+..
T Consensus 1690 vE~ 1692 (1710)
T KOG1070|consen 1690 VEY 1692 (1710)
T ss_pred HHH
Confidence 333
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.65 E-value=0.00055 Score=67.19 Aligned_cols=388 Identities=12% Similarity=0.127 Sum_probs=223.8
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007510 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (601)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 134 (601)
|.+......+++-+..+ ..+++++.++++. +-....|..-|+.-...++++....+|.+.... ..+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 66777777777766665 7999999999875 345678999999999999999999999998865 34566677666
Q ss_pred HHHHhc-CChhH----HHHHHHHH-HHCCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 135 TTCAKS-GKVDA----MFEVFHEM-VNAGIEP-NVHTYGALIDG---------CAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 135 ~~~~~~-g~~~~----a~~~~~~m-~~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
+--.+. ++... ..+.|+-. .+.|+.+ +...|+.-+.. |..+.+++...++|+++....+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 544332 33332 22334433 3345433 33456665543 344567788888898887643211111
Q ss_pred HHH------HHHHHH-------hccCCHHHHHHHHHHhhhCCCCCCCCHHH---------------HHHHHHHHHhcCCh
Q 007510 199 VFN------ALITAC-------GQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMKACANAGQV 250 (601)
Q Consensus 199 ~~~------~li~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---------------~~~ll~~~~~~g~~ 250 (601)
.|+ .=|+.. -+...+..|.++++++..-..|+.....+ |..+|. +-+.+-+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~-wEksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK-WEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH-HHhcCCc
Confidence 221 111111 12334566777766654322232221111 333333 2222111
Q ss_pred h---------HHHHHHHHHH-hcCCCCCHHHHHHHHHHH-------HhcCC-------HHHHHHHHHHHHHCCCCCCHHH
Q 007510 251 D---------RAREVYKMIH-KYNIKGTPEVYTIAINCC-------SQTGD-------WEFACSVYDDMTKKGVIPDEVF 306 (601)
Q Consensus 251 ~---------~a~~~~~~~~-~~~~~~~~~~~~~li~~~-------~~~g~-------~~~a~~~~~~m~~~~~~p~~~~ 306 (601)
. ...-+++... -.+.. +.+|.---..+ ...|+ -+++.++++.....-..-+..+
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~--peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYH--PEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111222222 12222 23333222222 22232 3555566655444322223344
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 007510 307 LSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALIT 382 (601)
Q Consensus 307 ~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~ 382 (601)
|..+.+.--.. ...+....+++++...-..--.-+|..+++.-.+..-+..|+.+|.+..+.+..+ ++...++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 44433321111 1255556666666554322224567788888888888999999999999877767 7778888888
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHH
Q 007510 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL--VMFKCIIGM 453 (601)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~--~~~~~li~~ 453 (601)
-||. ++.+-|.++|+.=.+. ..-+..--...++-+.+.++-..++.+|++....++.|+. .+|..+|+-
T Consensus 411 y~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 411 YYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 7774 6788899999874432 2223344457778888899989999999999888666654 467777753
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=4e-08 Score=59.03 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555544
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=0.0004 Score=68.19 Aligned_cols=380 Identities=14% Similarity=0.084 Sum_probs=223.8
Q ss_pred HhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHH
Q 007510 71 CKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAM 146 (601)
Q Consensus 71 ~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a 146 (601)
..+.|+++.|+.+|-.. .++|.+.|..-..+|+..|++++|++=-..-++. .|+ ...|+....++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 34568999999999753 4678889999999999999999999877766654 455 67899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HHHhC---CCCCCHHHHHHHHHHHhcc-------
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG------IMRSK---NVKPDRVVFNALITACGQS------- 210 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~---g~~p~~~~~~~li~~~~~~------- 210 (601)
+.-|.+-++.. +.|...++-+..++.... .+.+.|. .+... ........|..++..+-+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999988764 456777787887772110 1111111 11100 0000112233333222111
Q ss_pred ---CCHHHHHHHHHHhh-----hCC-----CCCCC------------C----------HHHHHHHHHHHHhcCChhHHHH
Q 007510 211 ---GAVDRAFDVLAEMN-----AEV-----HPVDP------------D----------HITIGALMKACANAGQVDRARE 255 (601)
Q Consensus 211 ---g~~~~A~~~~~~~~-----~~~-----~~~~~------------~----------~~~~~~ll~~~~~~g~~~~a~~ 255 (601)
.++..+.-.+.... ..+ .+..| | ..-...+.++.-+..+++.+.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 11111111111000 000 00011 1 0113345555556666777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHH
Q 007510 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS-------ALIDFAGHAGKVEAAFEILQ 328 (601)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------~li~~~~~~g~~~~a~~~~~ 328 (601)
-+....... .+..-++....+|...|.+.++...-....+.|.. ...-|+ .+..+|.+.++++.++..|+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777666654 33444566666777777777666666555554432 111222 23335555677777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007510 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (601)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (601)
+.......|+ ...+....+++.+..+...-. .|... ---.=...+.+.|++..|+..+.+++... +-
T Consensus 323 kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPD---------LLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 7655443332 223344445555555544432 23321 11122566789999999999999999864 44
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhhHHHHHHhhhhhhhccC
Q 007510 408 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM---FKCIIGMCSRRYEKARTLNEHVLSFNS 473 (601)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~---~~~li~~~~~~~~~a~~~~~~~~~~~~ 473 (601)
|...|+.-.-+|.+.|.+..|..-.+..++ +.|+... ....+--..++|++|.+..+..+..++
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 567899999999999999999999888887 4555432 222222222467777766655555554
No 102
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=0.00011 Score=70.72 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=130.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007510 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (601)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (601)
.+-..+...++.++|+.+.+.+++.. +-+..+|+..-.++...| ++++++..++++.+.. +.+..+|+.....+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 33344555677778888888777654 334556666666666666 5678888888777654 44566677665555555
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc---CCh
Q 007510 176 GQV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQV 250 (601)
Q Consensus 176 g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~ 250 (601)
|+. ++++..++++.+.. +-|..+|+....++...|+++++++.++++.+.. ..+...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhccccccc
Confidence 653 56677777777654 4466777777777777777888888888777642 33444555544444433 222
Q ss_pred ----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 251 ----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (601)
Q Consensus 251 ----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (601)
++.......+.... +.+..+|+-+...+... +...+|.+.+.+....++. +...+..|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 34555555555554 55667777777766662 3345576777666554433 55666666666654
No 103
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.0011 Score=69.77 Aligned_cols=321 Identities=14% Similarity=0.192 Sum_probs=149.2
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 007510 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (601)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 102 (601)
|..+-..+..+++..+-..+-+++++++.-.+ .++.+......++-...+. +.....++.+++..-|.. .+...+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~---~ia~ia 1058 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP---DIAEIA 1058 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch---hHHHHH
Confidence 34444555666777777777777777766433 2233333333332222111 112222222222211110 112234
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (601)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (601)
..++-+++|..+|+... .+....+.||. ..++++.|.+.-++.. .+..|..+..+-.+.|.+.+|+
T Consensus 1059 i~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred hhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHH
Confidence 44555666666665542 23344444443 2344555555444432 3345666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
+-|-+.. |+..|..+++...+.|.+++-.+.+.-.+++ .-+|. .-+.|+-+|++.+++.+.+++..
T Consensus 1125 eSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk--~~E~~--id~eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1125 ESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKK--VREPY--IDSELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred HHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--hcCcc--chHHHHHHHHHhchHHHHHHHhc----
Confidence 5554332 4555666666666666666666666554443 12233 22345666666666555444331
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007510 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (601)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (601)
-|+..-...+..-|...|.++.|.-+|... .-|..+...+...|++..|...-++. .+..||
T Consensus 1191 ---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktW 1252 (1666)
T KOG0985|consen 1191 ---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTW 1252 (1666)
T ss_pred ---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHH
Confidence 233334444455555555555554444321 22444444444555554444332221 134444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007510 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (601)
-.+-.+|...+.+.-| +|...++-....-..-++.-|...|-+++-+.+++.
T Consensus 1253 K~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 4444444443333222 222222222223344455555555555555555544
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=1.2e-05 Score=79.06 Aligned_cols=253 Identities=13% Similarity=0.092 Sum_probs=146.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007510 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (601)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 216 (601)
+.+.|++.+|.-.|+..++.. +-+...|.-|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 345666666666666665553 3355666666666666666666666666666553 33445555555666666666666
Q ss_pred HHHHHHhhhCCCCC----C--CCHHHHHHHHHHHHhcCChhHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 217 FDVLAEMNAEVHPV----D--PDHITIGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (601)
Q Consensus 217 ~~~~~~~~~~~~~~----~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (601)
++.++.-....+.. . ++...-.. ........+....++|-.+ ...+...|+.+...|.-.|.-.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 66665543321000 0 00000000 1111222233344444433 33333467777777777777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 007510 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-- 367 (601)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 367 (601)
+.|+..+...+. |..+|+.|...++...+.++|+..|++.++.. +--+.+...|.-.|...|.+++|.+.|-....
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 888877776544 66778888888877778888888888777653 12234555566677788888887777665542
Q ss_pred -C------CCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007510 368 -I------KLKPTVSTMNALITALCDGDQLPKTME 395 (601)
Q Consensus 368 -~------~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (601)
. ...++...|.+|=.++.-.++.+-+.+
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 112344667776666666666664443
No 105
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.55 E-value=6.7e-05 Score=75.73 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=103.0
Q ss_pred HHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007510 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (601)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (601)
+.+......+.+|+.+++.+... ..-..-|..+..-|+..|+++.|.++|.+. ..++--|.+|.+.|
T Consensus 739 ieaai~akew~kai~ildniqdq----k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ----KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh----ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 34455667788888888776643 222334666777888888888888888643 23566778888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (601)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (601)
+|++|.++-.+. .|.......|-+-..-.-..|++.+|.+++-.+ | .|+ ..|.+|-+.|..+..+++.+
T Consensus 806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 888888876543 344445556666666666778887777766432 2 233 34566777777777766655
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007510 364 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 364 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (601)
+-.. ..-..|...+..-|...|+...|...|-+
T Consensus 875 k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 875 KHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred HhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 4321 11122333444445555555555544433
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=1.7e-05 Score=80.28 Aligned_cols=212 Identities=14% Similarity=0.066 Sum_probs=106.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 007510 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (601)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (601)
.+...+.+.|-...|..+|+++. .|.-+|.+|...|+..+|..+..+-.++ +||...|..+.+...+..
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 44445555555555555555543 2444555555555555555555555443 455555555555555555
Q ss_pred CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (601)
Q Consensus 212 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (601)
-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.++++.|.+.
T Consensus 472 ~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 555555555443221 00011111122455555555555544443 33445555555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
|..-....+. +...|+.+-.+|.+.++-.+|...+++..+.+ .-+...|-..+....+.|.+++|.+.+.++.
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 5554443221 33455555555555555555555555555554 3334444445555555555555555555554
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=0.0018 Score=66.77 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=91.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-
Q 007510 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS- 210 (601)
Q Consensus 132 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~- 210 (601)
+++...|-.|+.++|-++-++- .|......|.+.|-..|++.+|...|.+.. +|...|+.|-.+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKEND 1007 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcC
Confidence 3444444455555555444332 355666677788888888888888777654 222223222211
Q ss_pred --------------CCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH--------HHhc--CCC
Q 007510 211 --------------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM--------IHKY--NIK 266 (601)
Q Consensus 211 --------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~--------~~~~--~~~ 266 (601)
.+.-.|-++|++.. . -+...+..|-+.|.+.+|+++--+ +... +..
T Consensus 1008 ~~d~L~nlal~s~~~d~v~aArYyEe~g-----~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1008 MKDRLANLALMSGGSDLVSAARYYEELG-----G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHcc-----h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 22333444444421 0 112234457788888777765311 1222 223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------CC----------------CCCCH----HHHHHHHHHHHh
Q 007510 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTK----------KG----------------VIPDE----VFLSALIDFAGH 316 (601)
Q Consensus 267 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------~~----------------~~p~~----~~~~~li~~~~~ 316 (601)
.|+...+.-...++...++++|..++-...+ +| -.|+. ..+..+...|.+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 4566666666666667777766666532211 11 12333 345566667888
Q ss_pred cCCHHHHHHHHHH
Q 007510 317 AGKVEAAFEILQE 329 (601)
Q Consensus 317 ~g~~~~a~~~~~~ 329 (601)
.|.+..|-+-|.+
T Consensus 1158 QG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQ 1170 (1416)
T ss_pred ccchHHHHHHHhh
Confidence 8888777665544
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=9.4e-05 Score=80.07 Aligned_cols=245 Identities=12% Similarity=0.047 Sum_probs=185.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKP---DRVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
+=|++..... +-+...|-..|......++.++|.+++++.+.. ++.- -...|.++++.-...|.-+...++|+++
T Consensus 1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 3344444332 445678999999999999999999999998753 1111 1245777777777778888999999998
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-
Q 007510 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP- 302 (601)
Q Consensus 224 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p- 302 (601)
.+- -....+|..|...|.+.+..++|.++++.|.+.- .-...+|...+..+.+..+-+.|..++.+.++.-++-
T Consensus 1524 cqy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1524 CQY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 763 2335678899999999999999999999998864 3567899999999999999999999999987653221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH
Q 007510 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV--STMNAL 380 (601)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l 380 (601)
......-.+..-.+.|+.+.+..+|+...... +-....|+..+++-.+.|+.+.++.+|+++...++.|-. ..|.-.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 22344555556678899999999999988764 556789999999999999999999999999988776642 455555
Q ss_pred HHHHHcCCChhHHHHHHHH
Q 007510 381 ITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~ 399 (601)
+..=-++|+-+.+..+=.+
T Consensus 1678 LeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HHHHHhcCchhhHHHHHHH
Confidence 5555555665544444333
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=1.2e-05 Score=81.34 Aligned_cols=233 Identities=11% Similarity=0.079 Sum_probs=180.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007510 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (601)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 277 (601)
..-..+...+...|-...|..+|++.. .|..++.+|...|+..+|..+..+..++ +|++..|..+.+
T Consensus 399 q~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 334456677888999999999998864 4667888999999999999998887772 788899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007510 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (601)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 357 (601)
......-+++|.++++..-.. .-..+.......+++.++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 988888899999998875432 11111122234789999999999877765 5567889899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 358 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
|.+.|....... +-+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+-...+.|.+++|.+.+.++.+
T Consensus 538 av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999988643 3346899999999999999999999999999876 33455566677778899999999999998875
Q ss_pred CC-CCCCHHHHHHHHHH
Q 007510 438 DG-VIPNLVMFKCIIGM 453 (601)
Q Consensus 438 ~g-~~p~~~~~~~li~~ 453 (601)
.. ...|..+..-++..
T Consensus 616 ~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRT 632 (777)
T ss_pred hhhhcccchhhHHHHHH
Confidence 31 11255555545544
No 110
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.0019 Score=68.12 Aligned_cols=250 Identities=15% Similarity=0.143 Sum_probs=162.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 007510 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (601)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 214 (601)
..+...+-+++|..+|++.. .+..+.+.|+. .-+..++|.+.-++.. .+..|+.+..+-.+.|.+.
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchH
Confidence 33445555666666666542 35555555554 3355566655544432 3467888888888888888
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (601)
Q Consensus 215 ~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (601)
+|.+-|-+. .|...|.-++....+.|.+++-.+.+....+..-.|. +=+.||-+|++.++..+..+++
T Consensus 1122 dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1122 DAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred HHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHh--
Confidence 887776442 3445777788888888888888888777766654443 3457778888888877655443
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 007510 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (601)
Q Consensus 295 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 374 (601)
.-|+......+.+-|...|.++.|.-+|.. +..|..|...+...|+++.|.+.-++. .+.
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 235666777777778888888887777753 445677777788888888887665543 366
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 007510 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (601)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 435 (601)
.+|-.+-.+|...+.+.-| +|.-.++.....-..-++.-|...|-+++.+.+++..
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 7888888888776665433 2333223334444666777777777777777666543
No 111
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=0.00025 Score=68.17 Aligned_cols=210 Identities=7% Similarity=-0.004 Sum_probs=128.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007510 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (601)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (601)
-..+...++.++|+.+.+++++.. +-+..+|+..-..+...| ++++++..++++.... +.+..+|+.....+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 333445667888888888888764 335566776666666666 5788888888888764 3455567655444545554
Q ss_pred --HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCH--
Q 007510 213 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---GDW-- 285 (601)
Q Consensus 213 --~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~-- 285 (601)
.++++.+++.+... -+.+..+|+...-.+.+.|+++++++.++++.+.+ +.+..+|+.....+.+. |..
T Consensus 122 ~~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 122 DAANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred hhhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccc
Confidence 25667777777653 23456677777777777788888888888888776 45556676665554443 222
Q ss_pred --HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 286 --EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (601)
Q Consensus 286 --~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (601)
++.++...+++...+. |...|+.+...+... ++..+|...+.+..+.+ +.+......|++.|+.
T Consensus 198 ~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3455555555555433 455565555555542 23344656655554433 3344555556666653
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=7.1e-05 Score=67.58 Aligned_cols=314 Identities=13% Similarity=0.083 Sum_probs=165.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA-LIDGCA 173 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-li~~~~ 173 (601)
+.+.+..+.+..++..|++++..-.++. +.+......|..+|....++..|-.-|+++... .|...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3444444555666777777776666553 335556666666777777777777777776654 344333321 223444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChh
Q 007510 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT--ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 251 (601)
+.+.+..|+++...|... |+...-..-+. .....+++..+..++++...+ .+..+.+.......+.|+++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHH
Confidence 566677777776666532 12111111111 123446666666666654321 22333333444445667777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHH
Q 007510 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS-----ALIDFAGHAGKVEAAFEI 326 (601)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~ 326 (601)
.|.+-|+...+.+--.....|+.-+. ..+.|+++.|++...++.++|+...+. ++ -.+++- ..|+ -..+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvr-svgN---t~~l 235 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVR-SVGN---TLVL 235 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchh-cccc---hHHH
Confidence 77777766655432223345554443 345566777777777777666542111 10 000000 0000 0000
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007510 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (601)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (601)
+. ++ =+..+|.-...+.+.|+.+.|.+-+-.|.-. .-..|++|...+.-.- ..+++.+..+-+.-+...+
T Consensus 236 h~----Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n- 306 (459)
T KOG4340|consen 236 HQ----SA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN- 306 (459)
T ss_pred HH----HH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-
Confidence 00 00 0122333334566888999999888888621 1234666655443222 2344555555555555532
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007510 406 CPNTITYSILLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (601)
+-...||..++-.||+..-++.|..++.+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 23467899999999999988888888754
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.48 E-value=2.4e-05 Score=72.87 Aligned_cols=187 Identities=10% Similarity=-0.012 Sum_probs=128.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--
Q 007510 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH-- 163 (601)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-- 163 (601)
+.....+..+...+.+.|+++.|...|+.+.... +.+. .++..+..++.+.|++++|...++++.+.. +.+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence 4456677888888899999999999999988754 2222 466778888999999999999999998763 11222
Q ss_pred -HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCC
Q 007510 164 -TYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 233 (601)
Q Consensus 164 -~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 233 (601)
++..+...+.+. |+.+.|.+.|+++... .|+. ..+..+..... .. ....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~--------- 166 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA--------- 166 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------
Confidence 455555556554 6788899999888766 3332 22222211100 00 0000
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 234 HITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
.....+...|.+.|++++|...++...+... +.....+..+...+.+.|++++|...++.+....
T Consensus 167 -~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 167 -GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 0112455678899999999999998877631 2345788899999999999999999988887653
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.002 Score=63.47 Aligned_cols=406 Identities=11% Similarity=0.132 Sum_probs=241.9
Q ss_pred hhhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC--CCCHHHHHHHHH
Q 007510 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (601)
Q Consensus 26 ~~~~~~~~~l~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~ 100 (601)
+-++.+|..|+ +...+++++..++++...- |....+....++.-...++++...++|.+-. .-+...|...|+
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34566788888 3559999999999999754 6666665555666666788999999998643 346777887776
Q ss_pred HHHh-cCChHH----HHHHHHHHH-HcCCCC-CHHHHHHHHHHH---------HhcCChhHHHHHHHHHHHCCCCCCHHH
Q 007510 101 VCAS-SKDSEG----AFQVLRLVQ-EAGLKA-DCKLYTTLITTC---------AKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (601)
Q Consensus 101 ~~~~-~g~~~~----A~~~~~~m~-~~g~~~-~~~~~~~li~~~---------~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (601)
---+ .++... -.+.|+... +.|+.+ .-..|+.-+..+ ....+++...++|.+++..-+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4332 233333 223333333 445443 233455555433 334466677888888875321111112
Q ss_pred HH------HHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHhccCC--
Q 007510 165 YG------ALIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSGA-- 212 (601)
Q Consensus 165 ~~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~li~~~~~~g~-- 212 (601)
|+ .=|+.. -+...+..|.++++++.. +|+..+..+ |-.+|.-=-..+.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 22 111111 124456778888887753 343322222 4444432211111
Q ss_pred ----H--HHHHHHHHHhhhCCCCCCCCHHH-HH----HHHHHHHhcCCh-------hHHHHHHHHHHhcCCCCCHHHHHH
Q 007510 213 ----V--DRAFDVLAEMNAEVHPVDPDHIT-IG----ALMKACANAGQV-------DRAREVYKMIHKYNIKGTPEVYTI 274 (601)
Q Consensus 213 ----~--~~A~~~~~~~~~~~~~~~~~~~~-~~----~ll~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~ 274 (601)
. ....-++++...- .+..|+... +. ..-+.+...|+. +++..+++.....-...+..+|..
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred ccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1111122222211 133343221 11 112234444554 444555554443322223334444
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007510 275 AINCCSQT---GDWEFACSVYDDMTKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (601)
Q Consensus 275 li~~~~~~---g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~ 349 (601)
+...--.. ...+.....+.+++..- ..| ..+|...+..-.+..-++.|..+|.++.+.+..+ ++.++++++.-|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 43321111 13556666666665542 333 3567788888888888999999999999988777 788889999877
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHH
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEV 427 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 427 (601)
| .++..-|.++|+--... ...+..--...++-+...++-..|..+|++....++.|+. ..|..+|.-=+.-|++..
T Consensus 413 c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 6 56789999999965443 1233444456778888889999999999999988777774 679999999999999999
Q ss_pred HHHHHHHHHH
Q 007510 428 GLMLLSQAKE 437 (601)
Q Consensus 428 a~~~~~~~~~ 437 (601)
+.++-+++..
T Consensus 491 i~~lekR~~~ 500 (656)
T KOG1914|consen 491 ILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=4e-05 Score=68.34 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007510 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (601)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (601)
...+..+....+.|++.+|...|.+..... ++|..+|+.+.-+|.+.|+++.|..-|.+..+.- .-+....+.+.-.+
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~ 178 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHH
Confidence 333334444444455555555544444332 3444445555555555555555554444444331 12233344444444
Q ss_pred hccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007510 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258 (601)
Q Consensus 208 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (601)
.-.|+.+.|..++...... -..|..+-..+.......|+++.|..+-.
T Consensus 179 ~L~gd~~~A~~lll~a~l~---~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLS---PAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHcCCHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 4445555555544444332 12233344444444444455555544443
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=0.00077 Score=65.66 Aligned_cols=219 Identities=13% Similarity=0.050 Sum_probs=142.6
Q ss_pred HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (601)
Q Consensus 213 ~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (601)
+.++...-+.+......-.|+...+...+........-..+..++.+..+. .....+.-..-.+...|++++|+..+
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l 329 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLL 329 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHH
Confidence 444454555554332223455555555554443333333333333333331 11234444445566788899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007510 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (601)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 372 (601)
+.+...-+. |...+....+.+...++.++|.+.++.+.... +......-.+..+|.+.|++.+|..+++...... +-
T Consensus 330 ~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~ 406 (484)
T COG4783 330 QPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PE 406 (484)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CC
Confidence 888776433 56666777778888899999999999888774 2236667778888999999999998888877553 56
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHH
Q 007510 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNLVMFKCI 450 (601)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~~~~~~~l 450 (601)
|+..|..|..+|...|+..++..-.-+ ++...|+++.|...+....+. ...|+..-+...
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dar 468 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADAR 468 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 788899999999988888877654433 456788888888888887765 233455555556
Q ss_pred HHHHH
Q 007510 451 IGMCS 455 (601)
Q Consensus 451 i~~~~ 455 (601)
|+...
T Consensus 469 i~~~~ 473 (484)
T COG4783 469 IDQLR 473 (484)
T ss_pred HHHHH
Confidence 65543
No 117
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.44 E-value=0.0011 Score=67.36 Aligned_cols=194 Identities=15% Similarity=0.177 Sum_probs=119.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007510 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (601)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (601)
+.+......+.+|+.+++.+.... .-..-|..+.+.|+..|+++.|.++|.+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344455667777777777766542 22334666677777777877777777643 2345566777777888
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 214 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (601)
Q Consensus 214 ~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 293 (601)
+.|.++-.+.. +.+.....|.+-..-.-+.|++.+|.+++-.+.. |+ .-|.+|-+.|..++.+++..
T Consensus 808 ~da~kla~e~~----~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 808 EDAFKLAEECH----GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHhc----CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHH
Confidence 77777766553 2233444555555555667777777776644322 22 23566777777777776665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 294 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (601)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (601)
+--... -..|...+..-+...|++..|..-|-+. .-|.+.+++|-..+.|++|.++-+
T Consensus 875 k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 875 KHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 432111 1234555666677778888887766432 235566777877888888776644
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=5e-05 Score=67.85 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCC--hhHHHH
Q 007510 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQ--LPKTME 395 (601)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~ 395 (601)
+.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444443333 3344444444444444444444444444444432 22334444444432 33333 244555
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 396 VLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 396 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
++++..+. .| +...+..+...+...|++++|...|+++.+
T Consensus 132 ~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55444442 22 233344444444445555555555554444
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=6.9e-05 Score=69.74 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV---HTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 191 (601)
....+..+...+.+.|++++|...|+++.... +.+. .++..+...|.+.|++++|...|+++.+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34445555555556666666666666555432 1111 24455555555566666666666655543
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.42 E-value=8.4e-05 Score=66.43 Aligned_cols=115 Identities=13% Similarity=0.138 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHHH
Q 007510 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAFEI 326 (601)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a~~~ 326 (601)
.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|.++
T Consensus 55 ~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 55 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 344444444444433 344444444444444444444444444444443322 33333333333 233333 2444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
+++..+.+ +.+..++..+...+.+.|++++|...|+++.+
T Consensus 133 l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444443 22334444444444444444444444444443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.40 E-value=0.00011 Score=65.56 Aligned_cols=155 Identities=17% Similarity=0.092 Sum_probs=72.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007510 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (601)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (601)
+-..+...|+-+....+...... ....|.......+....+.|++..|...|.+..... ++|...|+.+..+|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~---~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI---AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc---cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444444444444444433221 112233333334445555555555555555555443 44555555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (601)
Q Consensus 283 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 362 (601)
|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.++-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 5555555555554443222 33334444444444555555555555544443 223444444444555555555555443
Q ss_pred H
Q 007510 363 E 363 (601)
Q Consensus 363 ~ 363 (601)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00018 Score=64.27 Aligned_cols=150 Identities=20% Similarity=0.154 Sum_probs=73.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh---
Q 007510 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN--- 246 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 246 (601)
..|++.|++++|++...... +......=+..+.+..+.+-|.+.++.|... .+..+.+.|..++.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhc
Confidence 34555566666655554411 1112212223344455556666666665531 233444444444433
Q ss_pred -cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 007510 247 -AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA-AF 324 (601)
Q Consensus 247 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~ 324 (601)
.+.+.+|.-+|+++.+.- +|++.+.+-...++...|++++|..+++..+.+... ++.+...++......|...+ ..
T Consensus 185 ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHH
Confidence 234556666666665543 555566666666666666666666666666555443 44455444444444444433 23
Q ss_pred HHHHHHHH
Q 007510 325 EILQEAKN 332 (601)
Q Consensus 325 ~~~~~~~~ 332 (601)
+.+.+++.
T Consensus 263 r~l~QLk~ 270 (299)
T KOG3081|consen 263 RNLSQLKL 270 (299)
T ss_pred HHHHHHHh
Confidence 34444443
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=0.00055 Score=66.64 Aligned_cols=114 Identities=14% Similarity=0.039 Sum_probs=60.5
Q ss_pred HhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (601)
Q Consensus 207 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (601)
+...|+.++|++.++.+... .+.|...+......+.+.++..+|.+.++++.... +.....+-.+..+|.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChH
Confidence 33455556666666555543 22333444444555555666666666666555543 223445555555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (601)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (601)
+|+.+++........ |+..|..|..+|...|+..++..
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 666665555554333 55556666666665555554443
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.33 E-value=3.3e-05 Score=65.21 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (601)
+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|+...... +.+..++..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445555666677777777776666554 4456666666666667777777777777766654 4456666666666667
Q ss_pred cCCHHHHHHHHHHHHhC
Q 007510 175 AGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 175 ~g~~~~A~~~~~~m~~~ 191 (601)
.|++++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777666654
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.31 E-value=4.4e-05 Score=64.46 Aligned_cols=89 Identities=11% Similarity=-0.008 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 007510 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (601)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 391 (601)
..+...|++++|...|+...... +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..++.+.|+++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 33344444444444444444433 2334444444444444444444444444444332 223344444444444444444
Q ss_pred HHHHHHHHHHh
Q 007510 392 KTMEVLSDMKS 402 (601)
Q Consensus 392 ~A~~~~~~m~~ 402 (601)
+|...|+...+
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=0.00021 Score=75.91 Aligned_cols=236 Identities=10% Similarity=0.093 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHHHhcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007510 126 DCKLYTTLITTCAKSGKVDAM-FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (601)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (601)
++.....+=.+.+..|..++| .+++.+..+ ++....+-....+++.-...... ..+.+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 344444444556666777666 456655553 22223333333333333333332 2355688888899
Q ss_pred HHHhccCCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 007510 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 283 (601)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 283 (601)
....+.|..++|..+++.... +.|| ......+...+.+.+++++|....++....+ +.+......+..++.+.|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 999999999999999999875 3565 4566677888999999999999999999887 777888999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (601)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 363 (601)
++++|..+|++....+.. +..++..+..++...|+.++|...|+...+.. .+....|+.++ +++..-...++
T Consensus 169 ~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~ 240 (694)
T PRK15179 169 QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALR 240 (694)
T ss_pred chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHH
Confidence 999999999999985543 57888899999999999999999999988764 34445555544 23344445566
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHcC
Q 007510 364 HMKSI----KLKPTVSTMNALITALCDG 387 (601)
Q Consensus 364 ~m~~~----~~~~~~~~~~~li~~~~~~ 387 (601)
++.-. |....+.+...+|.-|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 241 RLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 55432 2222344555566655543
No 127
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.29 E-value=0.00047 Score=73.34 Aligned_cols=183 Identities=11% Similarity=0.062 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007510 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (601)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (601)
...+...+-.|.....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 44567788888888899999999999999998875 566778888889999999999999999998887654 5667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007510 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (601)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (601)
+..++.+.|++++|..+|+++...+ +-+..++..+...+.+.|+.++|...|+...+.. .+....|+..+. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 7788889999999999999998844 4557888888899999999999999999887653 355566665543 2
Q ss_pred hhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhhc
Q 007510 390 LPKTMEVLSDMKSLG----LCPNTITYSILLVACERK 422 (601)
Q Consensus 390 ~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~~~~ 422 (601)
...-..+++++.-.+ ...........|.-+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 334445566654332 222234455555555443
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=0.0087 Score=61.99 Aligned_cols=285 Identities=16% Similarity=0.172 Sum_probs=148.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCASSKDSEGAFQVL 115 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 115 (601)
.-|-+++|.+++.+-.+-+ ++-+++.+.|.+++|+++-+.-..-. ..+|.....-+-..++.+.|++.|
T Consensus 812 eLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHH
Confidence 4556666666666555433 23334445566666665543221111 123333333344445555555555
Q ss_pred HHH----------HHcC---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 116 RLV----------QEAG---------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (601)
Q Consensus 116 ~~m----------~~~g---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (601)
++. .... -..|...|.-....+-..|+.+.|+.+|..... |-++++..|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeecc
Confidence 432 1111 012333444444444555666666666655542 555666666667
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc---------
Q 007510 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--------- 247 (601)
Q Consensus 177 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------- 247 (601)
+.++|-++-++- | |......|.+.|-+.|++.+|..+|-+.. ++...|+.|-..
T Consensus 953 k~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----------afsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 953 KTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ-----------AFSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred CchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHhcCHHHHHHHH
Confidence 777766654432 2 45556667777777788888877776654 222233322111
Q ss_pred ------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHC--CCCCCHHHHHHHH
Q 007510 248 ------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD--------MTKK--GVIPDEVFLSALI 311 (601)
Q Consensus 248 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------m~~~--~~~p~~~~~~~li 311 (601)
.+.-.|-+.|++. |. -...-+..|.+.|.+.+|+++-=+ ++.. ....|+...+...
T Consensus 1016 al~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1222233333322 11 122334567788888887766321 2222 2334666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----------CCC----------------CCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 007510 312 DFAGHAGKVEAAFEILQEAKN----------QGI----------------SVGI----ISYSSLMGACSNAKNWQKALEL 361 (601)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~----------~~~----------------~~~~----~~~~~li~~~~~~g~~~~A~~~ 361 (601)
+.++...++++|..++....+ +|+ .|+. .+...+...|.+.|.+..|-+-
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKK 1167 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKK 1167 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 777777777777776654332 111 2222 2445667788888888888777
Q ss_pred HHHH
Q 007510 362 YEHM 365 (601)
Q Consensus 362 ~~~m 365 (601)
|.+.
T Consensus 1168 fTQA 1171 (1416)
T KOG3617|consen 1168 FTQA 1171 (1416)
T ss_pred Hhhh
Confidence 7654
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.00093 Score=71.90 Aligned_cols=160 Identities=12% Similarity=0.043 Sum_probs=102.1
Q ss_pred CCCCCCCCCCC-ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCC
Q 007510 13 YPNGKHANYAH-DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT 91 (601)
Q Consensus 13 ~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 91 (601)
|.+....+|+. +...-....+.+...+++++|+++.+...+.. |....++...+-++.+.++.+++..+
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------- 87 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------- 87 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--------
Confidence 44444445543 23333333344448999999999999777765 44444444444455555544443322
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
.++.......++.....+...|... ..+...+..+..+|-+.|+.++|..+|+++++.. +-|+.+.|.+.-.
T Consensus 88 -----~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~ 159 (906)
T PRK14720 88 -----NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATS 159 (906)
T ss_pred -----hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 4444444455554444455555543 3345577778888888888888888888888876 5578888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 007510 172 CAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~ 191 (601)
|+.. ++++|++++.+....
T Consensus 160 ~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 160 YEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHh-hHHHHHHHHHHHHHH
Confidence 8888 888888888777643
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.00049 Score=73.95 Aligned_cols=237 Identities=11% Similarity=0.051 Sum_probs=138.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007510 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (601)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 204 (601)
+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 4556777777777777777777777765554 3333 3333333455555654444433 2 22
Q ss_pred HHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 007510 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (601)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 284 (601)
.......++..+..+...+.. ...+...+..+..+|-+.|+.+++..+++++.+.+ +.++.+.|.+...|... +
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILL----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhcccccchhHHHHHHHHHHh----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 222222333222222223322 12333466667777777788888888888877777 66777777777777777 7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (601)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 364 (601)
+++|.+++.+.... +...+++..+.+++.++.... +.+...+. .+.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~----------------~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFL----------------RIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHH----------------HHHHH
Confidence 77777777665543 444556677777777766653 22222222 22222
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 365 MKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (601)
Q Consensus 365 m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 420 (601)
+... +...-+.++-.+-..|...++++++..+|+...+.. +-|.....-++..|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2221 223445566677778888888999999999888742 224555566665554
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0043 Score=55.70 Aligned_cols=246 Identities=12% Similarity=0.038 Sum_probs=137.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhH
Q 007510 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 252 (601)
.-.|.+..++..-...... +.+...-..+-++|...|.......- +.. +-.|.......+......-++.+.
T Consensus 19 fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~---~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKE---GKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccc---ccCChHHHHHHHHHHhhCcchhHH
Confidence 3346666665554444332 12333333455666666655432221 111 112333333222222222333332
Q ss_pred H-HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 253 A-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (601)
Q Consensus 253 a-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (601)
- ..+.+.+.......+......-...|++.|++++|++..+... +......=+..+.+..+.+.|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2334444444433333344444556778888888888776521 22222222334556677888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007510 332 NQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (601)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (601)
+-. +..+.+.|..++.+ .+.+.+|.-+|++|.+. .+|+..+.+.+..++...|++++|..++++.+.+. .-
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 654 45566655555543 45678888888888764 36888888888888888888888888888887753 33
Q ss_pred CHHHHHHHHHHHhhcCCHHH-HHHHHHHHHH
Q 007510 408 NTITYSILLVACERKDDVEV-GLMLLSQAKE 437 (601)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~ 437 (601)
++.|...++-.-...|...+ -.+.+.+...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 56666666665556665543 3445555554
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.17 E-value=0.016 Score=61.58 Aligned_cols=186 Identities=9% Similarity=0.020 Sum_probs=120.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007510 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (601)
Q Consensus 142 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (601)
+...|+..|-+..+.. +--...|..|...|+...+...|.+.|++..+.+ ..+...+......|++..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 3555665555555442 1124578888888888778888888888887664 4456677778888888888888888743
Q ss_pred HhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007510 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 301 (601)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 301 (601)
...++. ....-...|....-.|.+.++...+..-|+...+.+ +.|...|..+..+|...|++..|.++|.+.....+.
T Consensus 551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 332210 001111122223344667778888888888887776 667788888888888888888888888877665322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
+...--.....-+..|.+.++...+..+..
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 111111122234567888888888877654
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=9.2e-05 Score=62.01 Aligned_cols=23 Identities=22% Similarity=0.562 Sum_probs=8.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 007510 342 YSSLMGACSNAKNWQKALELYEH 364 (601)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~ 364 (601)
+..+...|.+.|++++|...+++
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=4.3e-06 Score=51.00 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=24.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (601)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=0.00017 Score=60.32 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=94.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCC
Q 007510 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405 (601)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (601)
.++.+.... +.+......+...+.+.|++++|.+.|+.+...+ +.+...|..+...+.+.|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 345555543 2345567778888999999999999999998764 4577889999999999999999999999988753
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 406 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (601)
Q Consensus 406 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (601)
+.+..++..+...+...|++++|...+++..+ ..|+...+..+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 124 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYSEL 124 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHHHH
Confidence 44567788888899999999999999999988 44665554433
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0054 Score=54.69 Aligned_cols=86 Identities=16% Similarity=0.083 Sum_probs=41.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (601)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 325 (601)
..|++++|.++++.+.+.+ +.|..++.--+...-..|+.-+|++-+.+..+.-+ .|...|.-+...|...|+++.|.-
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHH
Confidence 3455555555555555544 34444444444444444444455554444444322 245555555555555555555555
Q ss_pred HHHHHHHC
Q 007510 326 ILQEAKNQ 333 (601)
Q Consensus 326 ~~~~~~~~ 333 (601)
.++++.-.
T Consensus 176 ClEE~ll~ 183 (289)
T KOG3060|consen 176 CLEELLLI 183 (289)
T ss_pred HHHHHHHc
Confidence 55554443
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=8.9e-06 Score=49.57 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (601)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=9.3e-06 Score=49.11 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (601)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444444
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.036 Score=58.35 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=124.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCChHHH
Q 007510 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGA 111 (601)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A 111 (601)
++..+++..|++...++.++- |........-+-...+.|..++|..+++.. ...|..+...+-..|...++.++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 456777888888888877765 332222222222334567777777776643 234667777777888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHH
Q 007510 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ----------VAKA 181 (601)
Q Consensus 112 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A 181 (601)
..+|++.... -|+......+..+|.+.+++.+-.+.--++-+. .+.+...+=++++.+.+.-. ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 8888887754 455666677777777777665433322222221 13344555555555544211 2345
Q ss_pred HHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007510 182 FGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (601)
Q Consensus 182 ~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (601)
.+.++.+.+.+ -.-+..-...-...+...|.+++|..++..-.... -...+...-+.-+..+...+++.+..++-.++
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 55666665543 11111112222234455677888887774322211 11222333344555666667777766666666
Q ss_pred HhcC
Q 007510 261 HKYN 264 (601)
Q Consensus 261 ~~~~ 264 (601)
...+
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 6655
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.012 Score=52.58 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (601)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (601)
|..+.-+....|+.+.|...++.+..+- +.+..+-..-.-.+-..|++++|+++++.+++.++. |.+++..=+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHH
Confidence 3444444555566666666666655542 333332222222233456666666666666655432 44444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
.|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 44444555444444433 24445555555555555555555555555544
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.6e-05 Score=48.08 Aligned_cols=33 Identities=45% Similarity=0.794 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 007510 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (601)
Q Consensus 163 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 195 (601)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666555
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.87 E-value=0.0006 Score=66.98 Aligned_cols=120 Identities=14% Similarity=0.154 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (601)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (601)
.|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33344444455555555555554442 22 12223444444444445555554444332 223333343444444455
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 354 NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 354 ~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
+.+.|.++.+++.+. .|+ ..+|..|..+|.+.|+++.|+..++.+
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555544443 222 234555555555555555555444443
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.84 E-value=0.00088 Score=65.85 Aligned_cols=126 Identities=17% Similarity=0.155 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (601)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (601)
....+++..+...++++.|..+|+++.+.+ | .....++..+...++-.+|.+++++....... +...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344556666666777888888888877765 3 34445677777777777888888877765433 556666666677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
.+.++++.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77888888888888887764 4556688888888888888888888877765
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.81 E-value=0.0021 Score=54.47 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=34.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 277 NCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (601)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (601)
..+...|++++|...|+........|+. .....+...+...|++++|+..++..... ......+....+.|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 4444445555555555544443321111 12222333444444444444444332211 1222333344444444444
Q ss_pred HHHHHHHHH
Q 007510 355 WQKALELYE 363 (601)
Q Consensus 355 ~~~A~~~~~ 363 (601)
.++|+..|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 444444444
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.0017 Score=54.92 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHH
Q 007510 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEF 287 (601)
Q Consensus 210 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 287 (601)
.++...+...++.+.....+........-.+...+...|++++|...|+.+......+. ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555443111111112222333445555666666666655555431111 1233344555555666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (601)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (601)
|+..++...... .....+......+...|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666654432221 1233444455555666666666665554
No 146
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.75 E-value=0.00067 Score=66.98 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 007510 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (601)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (601)
.+.+......+++.+....+++++..++.+..........-..|..++++.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34566666667777777777777777777766542222222234457777777877778887777777777777777888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007510 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (601)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (601)
|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888887777776666555666666655555544
No 147
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.0005 Score=67.86 Aligned_cols=123 Identities=15% Similarity=0.057 Sum_probs=75.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007510 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 342 (601)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 342 (601)
.+.+......+++......+.+++..++.+..... ...-..|..++++.|.+.|..+.+..++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34455556666666666666666776666665541 1112234456677777777777777777766666777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 007510 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (601)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 387 (601)
|.|++.+.+.|++..|.++...|.......+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777766666555445555554444444443
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=3.6e-05 Score=45.29 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSLG 404 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (601)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.00063 Score=52.43 Aligned_cols=77 Identities=17% Similarity=0.390 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHCCCCCCHHHHHH
Q 007510 97 MLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG--------KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (601)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~~~~ 167 (601)
..|..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +....+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777776665542 12234455555555555555555555
Q ss_pred HHHHHH
Q 007510 168 LIDGCA 173 (601)
Q Consensus 168 li~~~~ 173 (601)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
No 150
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.69 E-value=0.00055 Score=52.75 Aligned_cols=81 Identities=17% Similarity=0.358 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVV 199 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~ 199 (601)
|-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666777999999999999999999 899999999999887643 34567889999999999999999
Q ss_pred HHHHHHHHhc
Q 007510 200 FNALITACGQ 209 (601)
Q Consensus 200 ~~~li~~~~~ 209 (601)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 151
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.03 Score=57.04 Aligned_cols=376 Identities=12% Similarity=0.102 Sum_probs=179.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH----------HHHhcCChhHH
Q 007510 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT----------TCAKSGKVDAM 146 (601)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~----------~~~~~g~~~~a 146 (601)
+++|.++.+. .|.+..|..+.......-.++.|...|-+... -+.......|-. .-+--|.+++|
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHh
Confidence 5566666554 46677888888777777777778777755432 111111111111 12234788999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
.++|-++-+++ .-|..+.+.|++-.+.++++.--.. .-+.-...|+.+...++....+++|.+.+..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99988876542 3455667778877777666532110 0011235677777777777777777777755321
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (601)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 305 (601)
....+.++.+..++++-+.+-..+++ +....-.+..++...|.-++|.+.|-+- +. |..
T Consensus 825 -----------~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-pka- 883 (1189)
T KOG2041|consen 825 -----------TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-PKA- 883 (1189)
T ss_pred -----------hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-cHH-
Confidence 11234444454444444443333322 2234444555555555555555544221 11 111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAKNQG-----------ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----IKL 370 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~ 370 (601)
.+..|...+++.+|.++-+...-.. +-.+..+ .--|..+.+.|+.-.|-+++.+|.+ .+.
T Consensus 884 ----Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~ 958 (1189)
T KOG2041|consen 884 ----AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYV 958 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccC
Confidence 1233444444444444333211000 0000001 1234556666666666666655543 222
Q ss_pred CCCHH----HHHH-HHHHH----------HcCCChhHHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHhhcCCHH
Q 007510 371 KPTVS----TMNA-LITAL----------CDGDQLPKTMEVLSDMKSL-------GLCP--NTITYSILLVACERKDDVE 426 (601)
Q Consensus 371 ~~~~~----~~~~-li~~~----------~~~g~~~~A~~~~~~m~~~-------g~~p--~~~t~~~ll~a~~~~g~~~ 426 (601)
++-.. ...+ |+.-+ -++|..++|..+++.-... +.-- ....|..+..--...|.++
T Consensus 959 p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~ 1038 (1189)
T KOG2041|consen 959 PYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVK 1038 (1189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHH
Confidence 22111 1111 11111 1356666776655542210 0111 1233444445556678888
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHH-HHH-hhHHHHHHhhhhhhhccCCCccchhhHHHHHHHHHHH
Q 007510 427 VGLMLLSQAKED-GVIPNLVMFKCIIG-MCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 492 (601)
Q Consensus 427 ~a~~~~~~~~~~-g~~p~~~~~~~li~-~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 492 (601)
.|.+.--.+.+. .+-|...+|+.|-- +|+ |.+.-|-+-.-.+..|..........+..+|+++|.+
T Consensus 1039 ~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~La~~iFsk 1107 (1189)
T KOG2041|consen 1039 DALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENLAFRIFSK 1107 (1189)
T ss_pred HHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHHHHHHhcc
Confidence 887765555544 46666777764432 222 2333332222222222222222223455667777754
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5.6e-05 Score=44.46 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (601)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45566666666666666666666665544
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.0022 Score=52.06 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=6.1
Q ss_pred HhcCCHHHHHHHHHHH
Q 007510 173 AKAGQVAKAFGAYGIM 188 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~m 188 (601)
.+.|++++|.+.|..+
T Consensus 13 ~~~~~~~~A~~~~~~~ 28 (119)
T TIGR02795 13 LKAGDYADAIQAFQAF 28 (119)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3333333333333333
No 154
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.60 E-value=0.0014 Score=50.39 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=43.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (601)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (601)
.+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 33444444555555555555554432 2223444445555555555555555555544432 223334445555555555
Q ss_pred CHHHHHHHHHHHH
Q 007510 177 QVAKAFGAYGIMR 189 (601)
Q Consensus 177 ~~~~A~~~~~~m~ 189 (601)
+.+.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555554443
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.54 E-value=0.0035 Score=50.82 Aligned_cols=97 Identities=13% Similarity=-0.008 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLK--ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE--PNVHTYGALID 170 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~ 170 (601)
+..+...+.+.|++++|...|+.+.+.... .....+..+..++.+.|+++.|.+.|+.+...... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344444555556666666666655543211 01234444555556666666666666655543100 11334555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 007510 171 GCAKAGQVAKAFGAYGIMRSK 191 (601)
Q Consensus 171 ~~~~~g~~~~A~~~~~~m~~~ 191 (601)
.+.+.|+.++|.+.++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555566666666666655554
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.53 E-value=0.0017 Score=49.90 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=9.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHH
Q 007510 412 YSILLVACERKDDVEVGLMLLSQA 435 (601)
Q Consensus 412 ~~~ll~a~~~~g~~~~a~~~~~~~ 435 (601)
+..+...+...|+++.|...+...
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333444444444444444333
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0026 Score=60.46 Aligned_cols=129 Identities=13% Similarity=0.039 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (601)
+|..++....+.+..+.|..+|.+..+.+.. +...|...... +...++.+.|..+|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 3444444444444444444444444432211 11222222222 11123333344444444433 233444444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
.+.++.+.|+.+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555544432 11111 2444444444444444444444444443
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.46 E-value=0.0033 Score=62.04 Aligned_cols=85 Identities=12% Similarity=0.028 Sum_probs=39.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 007510 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (601)
..|++++|+..|.++++.. +.+...|..+..+|.+.|++++|...++++.+.. +.+...|..+..+|...|++++|+.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3445555555555444443 2234444444444555555555555555544432 1233444444444555555555555
Q ss_pred HHHHHHh
Q 007510 396 VLSDMKS 402 (601)
Q Consensus 396 ~~~~m~~ 402 (601)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555444
No 159
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.03 Score=50.27 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCCChhhhHHHHHHHHhcCCHHHHHHHH
Q 007510 10 QFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLL 48 (601)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~ 48 (601)
+|.--.+++..+.+.++....+...|+.+.....++++-
T Consensus 6 ~~~~a~~~~~~~ad~~~~~f~~l~~l~~~~~~~~~~~~~ 44 (366)
T KOG2796|consen 6 GEKAAAKRQVLNADSVEQSFVGLKQLISCRNWRAAVDLC 44 (366)
T ss_pred hhHHhhhhhhhccCCchhhhhhHHHHHHhhhhHHHHhhh
Confidence 444445667778888888888888888766665555543
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0024 Score=55.88 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 007510 89 NPTLSTFNMLMSVCASS-----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (601)
Q Consensus 89 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 163 (601)
..+-.+|..+++.+.+. |..+=....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 45556666666665543 5566666677788888888888888888877644 2221 111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (601)
.- .-.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 123455678888888888888888888888888776654
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.36 E-value=0.0064 Score=50.77 Aligned_cols=97 Identities=12% Similarity=0.056 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
....-.+...+...|++++|..+|+.+.... +-+..-|-.|.-++-..|++++|+..|....... +-|+..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3333444445566667777777776666553 3345555556666666667777777776666655 3456666666666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 007510 172 CAKAGQVAKAFGAYGIMRS 190 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~ 190 (601)
+...|+.+.|.+.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6667777777666665554
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.0056 Score=60.42 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=54.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (601)
.+...|+++.|++.|++.++.. +.+...|..+..+|.+.|++++|+..++..++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445566666666666666554 3355566666666666666666666666666553 3345566666666666666666
Q ss_pred HHHHHHHHHhC
Q 007510 181 AFGAYGIMRSK 191 (601)
Q Consensus 181 A~~~~~~m~~~ 191 (601)
|+..|++....
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 163
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.33 E-value=0.0046 Score=58.80 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (601)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (601)
.+|..+++..-+.+..+.|+.+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666777777777777777777776443 2233444444444 22345556677777776654 22356666777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 314 AGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (601)
+.+.++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654 2222 247788888778888888888888887764
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.32 E-value=0.0089 Score=49.92 Aligned_cols=94 Identities=7% Similarity=-0.112 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (601)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 351 (601)
...+...+...|++++|.++|+-+....+. +..-|-.|..++-..|++++|+..|....... +.|+..+-.+..++.+
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334444555666666666666665554433 44455555555566666666666666665555 3455555556666666
Q ss_pred cCCHHHHHHHHHHHHh
Q 007510 352 AKNWQKALELYEHMKS 367 (601)
Q Consensus 352 ~g~~~~A~~~~~~m~~ 367 (601)
.|+.+.|++-|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665553
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.30 E-value=0.017 Score=59.65 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
+...|..+.......|++++|...++++.+ +.|+...|..+...+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555554444455666666666666665 335656666666666666666666666666655
No 166
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.28 E-value=0.0032 Score=55.06 Aligned_cols=116 Identities=19% Similarity=0.296 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 124 KADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 124 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
..|-.+|..+++.+.+. |.++-....+..|.+.|++.|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 45667777777777644 5666666777778888888888888888777654 3332 112222221
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHH
Q 007510 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMI 260 (601)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~ 260 (601)
.- --.+-+-|++++++|... |+-||..++..++..+.+.+.. .+..++.-.|
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~--gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENN--GVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 11 113456789999999874 8999999999999999877763 3333333333
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.18 Score=48.54 Aligned_cols=285 Identities=12% Similarity=0.064 Sum_probs=143.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 181 (601)
+.+..++.+|+..+...++.. +.++.-|..-...+...+++++|.--.+.-.+.. +-......-.-+++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 344456666666666666654 3344445555555555566666554444433321 11112222333333334444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHH
Q 007510 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMI 260 (601)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~ 260 (601)
.+.++ |...+ ....++..++..... +.-+|...++..+ ..++...|+.++|..+--.+
T Consensus 137 ~~~~~---------~~~~~-----------~~anal~~~~~~~~s-~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 137 EEKLK---------SKQAY-----------KAANALPTLEKLAPS-HSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHhh---------hhhhh-----------HHhhhhhhhhccccc-ccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 44433 11111 111222222222211 1112444444433 23455677888888777777
Q ss_pred HhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 261 HKYNIKGTPEVYTIAINC--CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (601)
Q Consensus 261 ~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (601)
.+.+ .. ..+..++++ +.-.++.+.+...|.+.+..+ |+...-... -...+.+..+...|
T Consensus 196 lkld-~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~----------~~~~k~le~~k~~g---- 256 (486)
T KOG0550|consen 196 LKLD-AT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA----------SMMPKKLEVKKERG---- 256 (486)
T ss_pred Hhcc-cc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH----------hhhHHHHHHHHhhh----
Confidence 6655 22 233333333 334567778888887776653 343322111 11122223333333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHH
Q 007510 339 IISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSI 414 (601)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 414 (601)
+-..+.|++..|.+.|.+.+.. +..|+...|........+.|+.++|+.--++..+ +.|.. ..|..
T Consensus 257 --------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ 326 (486)
T KOG0550|consen 257 --------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLR 326 (486)
T ss_pred --------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHH
Confidence 2345777888888888777642 3345555666666677788888888877777655 22221 12222
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 415 LLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
-..++.-.+++++|.+.++...+.
T Consensus 327 ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 327 RANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233445577888888888877764
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.27 E-value=0.016 Score=50.64 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (601)
.+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 445555555555666666666655554332221 2345555555555666666666665555542 2234444445555
Q ss_pred HHhcCCHHH
Q 007510 349 CSNAKNWQK 357 (601)
Q Consensus 349 ~~~~g~~~~ 357 (601)
|...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 555555433
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.26 E-value=0.02 Score=59.24 Aligned_cols=145 Identities=10% Similarity=-0.078 Sum_probs=102.2
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHH
Q 007510 264 NIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQEA 330 (601)
Q Consensus 264 ~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~ 330 (601)
..+.+...|...+.+.... +....|..+|++..+..+. ....+..+..++.... +...+.+.....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4467788999888886543 2367899999999887543 3455555544443221 123334444433
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 007510 331 KNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (601)
Q Consensus 331 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (601)
... ..+.++..+.++.-.+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++..+ +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 234456778777777777899999999999999864 7888999999999999999999999999887 56776
Q ss_pred HHHH
Q 007510 410 ITYS 413 (601)
Q Consensus 410 ~t~~ 413 (601)
.||.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 6654
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.25 E-value=0.00069 Score=51.09 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=19.0
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007510 106 KDSEGAFQVLRLVQEAGLK-ADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (601)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (601)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444443211 1222233344444444444444444444
No 171
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.23 E-value=0.11 Score=48.26 Aligned_cols=185 Identities=10% Similarity=-0.008 Sum_probs=111.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY---TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (601)
.+...+-.....+.+.|++++|.+.|+.+...-.. +.... -.+..++.+.+++++|...|++..+.-..-...-+.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 34444444555567789999999999999876422 23322 456678889999999999999988763211122333
Q ss_pred HHHHHHHh--cC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhC
Q 007510 167 ALIDGCAK--AG---------------Q---VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (601)
Q Consensus 167 ~li~~~~~--~g---------------~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 226 (601)
..+.+.+. .+ + ...|+..|+++++. |=.+.-..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH
Confidence 33333331 11 1 12344444444443 33333344555444443321
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (601)
Q Consensus 227 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (601)
+ - ..--.+...|.+.|.+..|..-|+.+.+. +.+........++.+|.+.|..++|......+.
T Consensus 174 ---l--a-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---L--A-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---H--H-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 0 11124566788888888888888888775 223345667778888888898888888776554
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.19 E-value=0.00077 Score=50.83 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=6.3
Q ss_pred HHHHHhcCCHHHHHHHH
Q 007510 346 MGACSNAKNWQKALELY 362 (601)
Q Consensus 346 i~~~~~~g~~~~A~~~~ 362 (601)
..+|.+.|++++|..++
T Consensus 32 a~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 33333333333333333
No 173
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.19 E-value=0.43 Score=50.70 Aligned_cols=222 Identities=12% Similarity=0.066 Sum_probs=131.6
Q ss_pred hhHHHHHHHHHHhhCC--CCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007510 73 SQKAIKEAFRFFKLVP--NPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (601)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (601)
..+++..|+....++. .||.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3466777777766653 23332 3333443 45778888888888877765533 77888888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----------HHHHHH
Q 007510 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA----------VDRAFD 218 (601)
Q Consensus 149 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~ 218 (601)
+|+..... .|+......+..+|.+.+.+.+-.++=-+|.+ .++-+...|-++++...+... ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 88888765 57777777788888887776544443333332 223344555556655544321 223445
Q ss_pred HHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 219 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
.++.+..+. |-.....-...-...+...|.+++|.+++. ...+.-.+.+...-+.-+..+...+++.+..++-.++..
T Consensus 176 m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 555555442 211111112222333455666777777773 333333333444455566667777777777777777776
Q ss_pred CCC
Q 007510 298 KGV 300 (601)
Q Consensus 298 ~~~ 300 (601)
.|.
T Consensus 255 k~~ 257 (932)
T KOG2053|consen 255 KGN 257 (932)
T ss_pred hCC
Confidence 654
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.19 E-value=0.075 Score=50.75 Aligned_cols=151 Identities=13% Similarity=0.153 Sum_probs=85.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHH
Q 007510 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKS----IKLKPT--VSTMNALIT 382 (601)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~~~~~~--~~~~~~li~ 382 (601)
.+..|...|++..|-..+.. +...|... |++++|.+.|++..+ .+ .+. ...+..+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 33455666666666555443 44456666 788888888877653 12 111 234566778
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 007510 383 ALCDGDQLPKTMEVLSDMKSLGLC-----PNTI-TYSILLVACERKDDVEVGLMLLSQAKED--GVIPN--LVMFKCIIG 452 (601)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~--g~~p~--~~~~~~li~ 452 (601)
.+.+.|++++|.++|++....-.. .+.. .|...+-.+...||+..|.+.+++.... ++..+ ......||+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 889999999999999987654222 2221 2333444667789999999999988753 34333 233445555
Q ss_pred HHHhhHHHHHHhhhhhhhccCCCccc
Q 007510 453 MCSRRYEKARTLNEHVLSFNSGRPQI 478 (601)
Q Consensus 453 ~~~~~~~~a~~~~~~~~~~~~~~~~~ 478 (601)
+|-. .....+.+++..|+...+.+
T Consensus 244 A~~~--~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 244 AYEE--GDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHT--T-CCCHHHHCHHHTTSS---
T ss_pred HHHh--CCHHHHHHHHHHHcccCccH
Confidence 5432 11223455667777765544
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.19 E-value=0.019 Score=50.24 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (601)
Q Consensus 91 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 168 (601)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777788888999999999988876543222 4577888888888999999999988888753 3356667777
Q ss_pred HHHHHhcCCHHHHHHHH
Q 007510 169 IDGCAKAGQVAKAFGAY 185 (601)
Q Consensus 169 i~~~~~~g~~~~A~~~~ 185 (601)
...|...|+...+..-+
T Consensus 113 g~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHcCChHhHhhCH
Confidence 77777777755544433
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.15 E-value=0.016 Score=50.54 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (601)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++...... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 445556666666677777777777665543222 12355666666666777777777776666543 223344445555
Q ss_pred HHH
Q 007510 348 ACS 350 (601)
Q Consensus 348 ~~~ 350 (601)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
No 177
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.0058 Score=56.02 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=49.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVG 428 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 428 (601)
.+.+++++|+..|.+.++.. +.|.+-|..=..+|.+.|.++.|++-.+..+. +.|. ..+|..|..+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHH
Confidence 34555555555555555432 23444444455555555555555555555444 3333 24455555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH
Q 007510 429 LMLLSQAKEDGVIPNLVMFKCI 450 (601)
Q Consensus 429 ~~~~~~~~~~g~~p~~~~~~~l 450 (601)
.+.|++.++ ++|+..+|..=
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~n 188 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSN 188 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHH
Confidence 555555554 55555544443
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.0066 Score=55.68 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=80.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhH
Q 007510 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPK 392 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~ 392 (601)
..+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++=.+..... .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 456788999999999888875 557777778888999999999998888877764 343 5788889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 393 TMEVLSDMKSLGLCPNTITYSILLVA 418 (601)
Q Consensus 393 A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (601)
|++.|++.++ +.|+..+|-.=|..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 9999999887 78888877665544
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.11 E-value=0.0018 Score=46.41 Aligned_cols=52 Identities=21% Similarity=0.241 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC
Q 007510 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (601)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (601)
|+++|++++|++.|+++.... |.+..+...++.++...|++++|.+.++++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467788888888888888776 6677777777777778888888888887765
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.10 E-value=0.011 Score=51.56 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
++..+...+...|++++|...++....
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.07 E-value=0.12 Score=47.79 Aligned_cols=55 Identities=9% Similarity=-0.006 Sum_probs=24.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007510 345 LMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (601)
+...|.+.|.+..|..-|+.+.+. +.+........++.+|...|..++|.+....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 334455555555555555555432 0011122333444555555555555444433
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.05 E-value=0.037 Score=44.53 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=25.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 278 CCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555444322 12233333444455555555555554443
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.033 Score=51.54 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 338 GIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
|...|-.|...|...|+.+.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.95 E-value=0.0034 Score=44.99 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=22.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
.|++++|+++|+.+.+.. +.+...+..+..+|.+.|++++|.++++.+...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444444444444432 223444444444444444444444444444433
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.31 Score=44.10 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH----
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL---- 345 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---- 345 (601)
.+.+.++..+.-.|.+.-....+++..+.....++...+.+.+.-.+.|+.+.|...|+...+..-..|....+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4566777777788888888888888888776668888888888888899999999999877664333343333333
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 346 -MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (601)
Q Consensus 346 -i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (601)
...|.-.+++..|...|.++.+.. +.|+...|.=.-+..-.|+..+|++.++.|.+ ..|...+-.+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 334556777888888888777643 34455555444444446888888888888887 3555554443
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.88 E-value=0.058 Score=43.40 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=21.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 007510 172 CAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMN 224 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 224 (601)
+-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+|++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444443222 1122233334444444444444444443
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.82 E-value=0.005 Score=43.63 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=23.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
.+.+.|++++|...|+++.+.. +-+...|..+..++.+.|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444432 12334444444444444444444444444443
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.039 Score=51.04 Aligned_cols=100 Identities=12% Similarity=0.044 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 007510 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---GQVAKAFGAYGIMRSKNVKPDRVVF 200 (601)
Q Consensus 124 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~ 200 (601)
+-|...|-.|...|...|+.+.|..-|....+.. ++|...+..+..++... ....++..+|+++.... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4455556666666666666666666665555442 33444444444443322 12345555565555442 2233344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 201 NALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
..|...+...|++.+|...++.|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444555555666666666665554
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.76 E-value=0.12 Score=49.34 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 273 TIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 273 ~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
..+...+.+.|++++|.++|++...
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444444555555555555554443
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.73 E-value=0.61 Score=45.00 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (601)
+.+..|.-+...|+...|.++-++. . .||...|-..+.+++..+++++-..+-.. .-++.-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455566677777766665443 2 35777777777888888887776664332 123466777777787
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 007510 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (601)
+.|+..+|..+..++. +..-+..|.+.|++.+|.+.-.+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8888777777766521 134556677777777776654443
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.67 E-value=0.0073 Score=42.74 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=18.6
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
.+.|++++|.+.|+.+++.. +-+...+..+...+...|++++|...|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444433332 113333333333334444444444444333
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.62 E-value=0.38 Score=41.16 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCC-CCCCCHHHH
Q 007510 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITI 237 (601)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 237 (601)
.|++.-...|..+....|+..+|...|++...--..-|....-.+.++....++...|...++.+.+-.. +-.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 4555556666666777777777777777666544444556666666666666777777776666554211 11233 33
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (601)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (601)
..+.+.+...|.+.+|+.-|+..... -|+...-.-....+.+.|+.+++..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 34556666666776677666666654 23333333333445555655554433
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.56 E-value=0.41 Score=43.05 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=32.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGLK--ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
....+.+.|++.+|...|+.+...... --....-.++.++.+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455666777777777776654211 11334445566666777777777777766554
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.56 E-value=0.012 Score=42.18 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 007510 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (601)
Q Consensus 92 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 154 (601)
+..|..+...+...|++++|+..|++..+.. +.+...|..+..++.+.| ++++|++.+++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3344444455555555555555555554443 223444444444555554 3555555554444
No 195
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.53 E-value=0.82 Score=43.94 Aligned_cols=286 Identities=15% Similarity=0.116 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHhhC---CCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHH
Q 007510 74 QKAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVDAM 146 (601)
Q Consensus 74 ~~~~~~A~~~~~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a 146 (601)
.|+-..|+++-.+. ...|......++.+ -.-.|+++.|.+-|+.|... |... -...|.-..-+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 35666666655432 23344444444443 34469999999999999852 2222 233444445578999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHH--HHHHHHHHhc---cCCHHHHHHHH
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVV--FNALITACGQ---SGAVDRAFDVL 220 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~--~~~li~~~~~---~g~~~~A~~~~ 220 (601)
.+.-+..-..- +--...+.+.+...+..|+++.|+++.+.-+.. -+.++..- -..|+.+-.. ..+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88888776542 334678899999999999999999999877653 23444432 2234433221 23455566555
Q ss_pred HHhhhCCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 007510 221 AEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-K 298 (601)
Q Consensus 221 ~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~ 298 (601)
.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+.. |.+.++...+ +.+.|+. ++.-+++..+ .
T Consensus 253 ~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 253 LEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCCc--HHHHHHHHHHHH
Confidence 55443 3455332 2234567899999999999999998875 4444443332 3455553 2333332221 1
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHH
Q 007510 299 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSIKLKPTVST 376 (601)
Q Consensus 299 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~ 376 (601)
.++| +..+...+..+....|++..|..--+...+. .|....|..|.+.-. ..|+-.+++..+.+..+. |....
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A---PrdPa 397 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA---PRDPA 397 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC---CCCCc
Confidence 1233 4556677778888889999888776666554 577778877777654 459999999999998874 33344
Q ss_pred HH
Q 007510 377 MN 378 (601)
Q Consensus 377 ~~ 378 (601)
|+
T Consensus 398 W~ 399 (531)
T COG3898 398 WT 399 (531)
T ss_pred cc
Confidence 54
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.52 E-value=0.014 Score=41.87 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDM 295 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m 295 (601)
+|..+...+...|++++|+..|++..+.+ +.+...|..+..+|.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33344444444444444444444444443 333444444444444444 344444444443
No 197
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.49 E-value=0.89 Score=43.92 Aligned_cols=107 Identities=10% Similarity=0.019 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (601)
+.+..+.-+...|....|.++-.+. . .|+...|..-+.+|+..++|++-.++... +.+++-|...+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444455566678877777765543 2 46777888888888888888877665332 234577888888888
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 007510 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (601)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 432 (601)
+.|+..+|..+..++ ++ ..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHH
Confidence 888888888877762 21 33445566777777776553
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.44 E-value=0.059 Score=51.61 Aligned_cols=264 Identities=15% Similarity=0.067 Sum_probs=137.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHH--HHC--CC-CCCHHHHHHHHHHH
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEM--VNA--GI-EPNVHTYGALIDGC 172 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m--~~~--g~-~~~~~~~~~li~~~ 172 (601)
+++.|+......+|+..++.| ..|. .+|..|.++|.-.+++++|++++..= +.+ |- .-...+...|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 677788888888888887776 3343 34666667777777788877765321 110 00 00111222233344
Q ss_pred HhcCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHhccCC--------------------HHHHHHHHHHhhhCC
Q 007510 173 AKAGQVAKAFGAYGI----MRSKNVK-PDRVVFNALITACGQSGA--------------------VDRAFDVLAEMNAEV 227 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~~~ 227 (601)
--.|.+++|+-.-.+ ..+.|-. .....+..+...|...|+ ++.|.++|.+-.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555432211 1111100 012233344455543332 233334433211100
Q ss_pred --CCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 007510 228 --HPV-DPDHITIGALMKACANAGQVDRAREVYKMIHK----YNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-- 297 (601)
Q Consensus 228 --~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 297 (601)
.+- -.--..|..|.+.|.-.|+++.|+...+.-.. .|- ......+..+.+++.-.|+++.|.+.|+.-..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 000 00112344455555556778887766643322 121 11124567777888888888888888776432
Q ss_pred --CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 298 --KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 298 --~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
.|- .....+.-+|...|.-..++..|+.++.+-..- ...-....+.+|..+|...|..++|..+.+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 221 112334556666777777788888777653321 112345677788888888888888877766544
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.43 E-value=0.56 Score=42.21 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=8.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007510 347 GACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 347 ~~~~~~g~~~~A~~~~~~m~ 366 (601)
..|.+.|.+..|..-++.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHH
Confidence 33444444444444444444
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.42 E-value=0.95 Score=43.51 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHCCCCC
Q 007510 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIP 442 (601)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~g~~p 442 (601)
..+-..+..+-...|++..|..--+...+ ..|....|..|.+.-.. .||-.++++.+.+..+..-+|
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 34444444555555555555544444433 34555555555544322 355555555555555543333
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.40 E-value=0.078 Score=49.55 Aligned_cols=97 Identities=12% Similarity=0.074 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHH
Q 007510 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFN 201 (601)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~ 201 (601)
..|...+..+.+.|++++|...|+.+++. .|+. .++..+...|...|++++|...|+.+...- -+.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555554445556677777777776654 2332 355566666667777777777777766431 011233344
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhC
Q 007510 202 ALITACGQSGAVDRAFDVLAEMNAE 226 (601)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~~~~~ 226 (601)
.+...+...|+.++|..+|+.+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566667777777777766653
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.36 E-value=0.56 Score=40.14 Aligned_cols=130 Identities=11% Similarity=0.030 Sum_probs=84.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 007510 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTM 377 (601)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~ 377 (601)
.|++..-..+..+....|+..+|...|++...--+--|....-.+.++....+++..|...++.+-+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 456666666777777777777777777777665555667777777777777777777777777766532 1222 33
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007510 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (601)
-.+.+.|.-.|.+.+|..-|+.... ..|+...-.....-+.++|+.+++..-+..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 4456677777777777777777776 456655544444455666666655544433
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.29 E-value=0.071 Score=49.83 Aligned_cols=51 Identities=20% Similarity=0.061 Sum_probs=23.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 173 AKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
.+.|++++|...|+.+... .|+. ..+..+...|...|++++|...|..+..
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345555555555555443 2221 2333344444445555555555544443
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.18 E-value=0.031 Score=47.28 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 007510 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVV 199 (601)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 199 (601)
...++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+...|.+.|+++.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555555666666666666665543 34555666666666666666666666655532 355555544
No 205
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.13 E-value=2.1 Score=44.48 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
.|..|.+-....|..+.|++.--.+.+ ..+-|....|+.+.-+.+....+...-+.|-++.
T Consensus 1023 HFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1023 HFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 344455556678889998876544433 1366777788877666665555554444444433
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.13 E-value=0.032 Score=40.46 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=21.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
|.+.+++++|.++++.+.... +.+...|......+.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444332 12233333344444444444444444444433
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.05 E-value=0.11 Score=42.31 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 007510 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (601)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (601)
..|+..+..+++.+|+..|++..|+++++..... .+++-+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Confidence 4556666666666666666666666666665554 34555555565555543
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.04 E-value=0.045 Score=39.69 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=21.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 137 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
|.+.+++++|.++++.+...+ +.+...|......+.+.|++++|.+.|++..
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334444444444444444332 2233333344444444444444444444444
No 209
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.01 E-value=0.42 Score=40.32 Aligned_cols=122 Identities=11% Similarity=0.100 Sum_probs=81.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCC--CHHHH--HHHH---HHHHhcC
Q 007510 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP--TLSTF--NMLM---SVCASSK 106 (601)
Q Consensus 34 ~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~--~~li---~~~~~~g 106 (601)
.|.+.++.++|+..|.++.+.|.-............+..+.|+...|...|+++... .+... ..-+ -.+..+|
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc
Confidence 456889999999999999998876666666666677777888899999999876421 11111 0111 1245667
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007510 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155 (601)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 155 (601)
.++......+-+-..+-+.-...-..|.-+..+.|++..|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777776666665544333444555666666677777777777777664
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.95 E-value=0.054 Score=45.83 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HCCCCCCHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV-----NAGIEPNVHTYG 166 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~~~ 166 (601)
....++..+...|+++.|..+.+.+.... +.|...|..+|.+|...|+...|.++|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45567777888999999999999999876 6688999999999999999999999999875 358888876543
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.89 E-value=1.5 Score=44.95 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhh
Q 007510 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (601)
Q Consensus 44 A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (601)
.+.-++++.++|..|.... ++..+.-.|.+.+|.++|++
T Consensus 619 li~EL~~~k~rge~P~~iL----lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL----LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH----HHHHHHhhhhHHHHHHHHHH
Confidence 3334444555554332221 22334445666666666654
No 212
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.86 E-value=0.18 Score=40.98 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhh-------------hCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-
Q 007510 198 VVFNALITACGQSGAVDRAFDVLAEMN-------------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY- 263 (601)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 263 (601)
.++..++.++++.|+++....+++..- ....++.|+..+..+++.+|+..|++..|.++.+.+.+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344444555555555554444443321 112244556666666666666666666666666555432
Q ss_pred CCCCCHHHHHHHHHHH
Q 007510 264 NIKGTPEVYTIAINCC 279 (601)
Q Consensus 264 ~~~~~~~~~~~li~~~ 279 (601)
+++.+..+|..|+.-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3444455555555443
No 213
>PRK15331 chaperone protein SicA; Provisional
Probab=95.85 E-value=0.15 Score=43.04 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=39.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCChHHHHH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQ 113 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 113 (601)
.+|++++|..+|.-+...+ +++..+..-++..+...+++++|+..|... ...|+...-.....+...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 5555555555555555544 344444444444444455555555555421 12233333334444445555555555
Q ss_pred HHHHHHH
Q 007510 114 VLRLVQE 120 (601)
Q Consensus 114 ~~~~m~~ 120 (601)
.|.....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554443
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.79 E-value=0.18 Score=48.41 Aligned_cols=132 Identities=12% Similarity=-0.031 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHH
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAK----NQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMK----SIKL-KPTVS 375 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~-~~~~~ 375 (601)
.|..|...|.-.|+++.|+..++.-. +.|-+ .....+..|.+++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555666778888887776532 22211 123456677777888888888888777543 2221 11223
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHH----hCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMK----SLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
+.-+|...|.-...+++|+.++.+-+ +.+ ..-....+.+|..++...|..++|..+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45567777777777888888776522 111 122346678888888888888888877765543
No 215
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.71 E-value=0.094 Score=47.71 Aligned_cols=124 Identities=18% Similarity=0.232 Sum_probs=73.7
Q ss_pred HHHHhhCC--CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007510 81 FRFFKLVP--NPTLSTFNMLMSVCASS-----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (601)
Q Consensus 81 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 153 (601)
.+.|..++ +.|-.+|-+.+..+... +..+--...++.|.+.|+..|..+|+.|++.+-+..-.
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi---------- 123 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI---------- 123 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------
Confidence 34455555 45666777666665543 44555556667777778777888887777765333211
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHh
Q 007510 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV-DRAFDVLAEM 223 (601)
Q Consensus 154 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~ 223 (601)
|.. .+....-.|- .+-+-+++++++|...|+.||..+-..|++++.+.+.. .+..+++-.|
T Consensus 124 ------P~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 124 ------PQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred ------cHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 110 1111111121 23345788888888888888888888888888877653 2333333333
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.68 E-value=0.24 Score=49.06 Aligned_cols=71 Identities=8% Similarity=0.023 Sum_probs=42.9
Q ss_pred CCCCCCCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH---HHHHHHHHHHhhhHHHHHHHHHHhh
Q 007510 14 PNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK---VYHARFFNVCKSQKAIKEAFRFFKL 86 (601)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (601)
........|.+.......-..|.+.|++++|+..|++.++.+ |.+. ..+..+...+...|+.++|+..|++
T Consensus 64 ~~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 64 AKDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333445667777777777777778888888888888877766 4333 2234444444444455555544444
No 217
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.56 E-value=2.7 Score=41.46 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=79.4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC----chHHHHHHHHHHHhhhHHHHHHH---HHHhhCCCCCHHHHHHHHHH--HHhcCC
Q 007510 37 RQGRISECIDLLEDMERKGLLD----MDKVYHARFFNVCKSQKAIKEAF---RFFKLVPNPTLSTFNMLMSV--CASSKD 107 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~li~~--~~~~g~ 107 (601)
+++++.+|-.+|.++.+.-... ....+.+.++.++-. ++++.-. ..+++-.+ ...|-.+..+ +-+.++
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhh
Confidence 8899999999999987653211 113334444444432 2233222 22222222 2234444433 456788
Q ss_pred hHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 007510 108 SEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGALI 169 (601)
Q Consensus 108 ~~~A~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li 169 (601)
+.+|.+.+..-..+ +-.| |-..=+..++.+...|++.+++.+++++... ....+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 88888888766544 2221 2222345667778889999998888877653 3347888888866
Q ss_pred HHHHh
Q 007510 170 DGCAK 174 (601)
Q Consensus 170 ~~~~~ 174 (601)
-++.+
T Consensus 175 lmlsr 179 (549)
T PF07079_consen 175 LMLSR 179 (549)
T ss_pred HHHhH
Confidence 66654
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=3.9 Score=42.99 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 007510 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 337 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (601)
||-..|-.=+.+++..+++++-.++-+..+ .+.-|...+.+|.+.|+.++|.+++-+
T Consensus 713 pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 713 PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhc
Confidence 344444444444444444444433322221 123344444444455555555544443
No 219
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.51 E-value=0.94 Score=45.95 Aligned_cols=169 Identities=12% Similarity=0.165 Sum_probs=102.0
Q ss_pred ChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 007510 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (601)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 103 (601)
.+..+..-|...+-+++++++.++.+.=.-.. .-+......+++++.+.|..+.|+.+-. |+ ..-.....
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl 329 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVT-----DP---DHRFELAL 329 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHH
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHH
Confidence 44566677777888888888777664111111 1123335566777777788888877632 22 23345566
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (601)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 183 (601)
+.|+++.|.++.+. .++...|..|.+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 77888888776543 33677888888888888888888888877652 5667777778888877777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007510 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 223 (601)
+-+.....| -++....++.-.|+.++..+++.+.
T Consensus 395 l~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777766664 2555555666667777777777653
No 220
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.49 E-value=1.5 Score=45.00 Aligned_cols=213 Identities=12% Similarity=0.147 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 007510 126 DCKLYTTLITTCAKSGKVDAMFEV---------FHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVK 194 (601)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~---------~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 194 (601)
....+.+=+..|...|.+++|.++ |+.+... ..+.--++.-=.+|.+-.+ +-+...-+++++++|-.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~ 632 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGET 632 (1081)
T ss_pred ccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCC
Confidence 334444555566677777776543 2222111 1122334444556665544 33445556777888877
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHH------------HHHHh
Q 007510 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMIHK 262 (601)
Q Consensus 195 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~------------~~~~~ 262 (601)
|+.... ...++-.|.+.+|-++|.+--. + +..+.+|.....++.|.++. ++-.+
T Consensus 633 P~~iLl---A~~~Ay~gKF~EAAklFk~~G~-----e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 633 PNDLLL---ADVFAYQGKFHEAAKLFKRSGH-----E------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred chHHHH---HHHHHhhhhHHHHHHHHHHcCc-----h------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 876653 3446667888888888876422 1 12233344444444444333 22111
Q ss_pred --cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 263 --YNIKGTPEVYTIAINCCSQTGDWEFACSVYDD------MTKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (601)
Q Consensus 263 --~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (601)
++++. -.+-...+...|+.++|..+.-+ +.+.+- ..+..+...+..-+-+...+..|.++|..|-
T Consensus 699 WAr~~ke----PkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 699 WARNIKE----PKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred HhhhcCC----cHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 01111 01223444556666666554321 111111 1133344444444455566666777776653
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
.. ..+++.....+++.+|..+-++..+
T Consensus 775 D~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 775 DL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred cH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 22 3566677777777777777776654
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.45 E-value=2.9 Score=41.12 Aligned_cols=145 Identities=10% Similarity=0.131 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 007510 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALI 381 (601)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li 381 (601)
...|...+..-.+..-++.|..+|-+..+.+ ..+++.++++++..++ .|+...|..+|+--... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567777887778888899999999998888 5678888899987665 56778888888864433 3555444 4556
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 382 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (601)
.-+..-++-+.|..+|+...+. +..+ ...|..+|.--..-|++..+..+-++|.. .-|...+-....+.|
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 6677788889999999965543 3334 56788999888899999888888888876 344443333333333
No 222
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.40 E-value=3.8 Score=42.04 Aligned_cols=129 Identities=10% Similarity=0.148 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---CCCHHHHHHH
Q 007510 26 SEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (601)
Q Consensus 26 ~~~~~~~~~l~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (601)
......|..|+..+ ..+.++.+++.++..- |.-..+...++..-.+.|..+.+.++|++.. +-++..|...
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y 119 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSY 119 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34556787888443 3355555666666543 6667777777777788899999999999754 4566678777
Q ss_pred HHHHH-hcCChHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 99 MSVCA-SSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 99 i~~~~-~~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
+..+. ..|+.+.....|+..... |.. .....|...|..-..++++.....+|++.++.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 66544 457888888888887764 221 24556888888888889999999999999863
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.38 E-value=3 Score=40.83 Aligned_cols=31 Identities=19% Similarity=0.061 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 408 NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 408 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
|--.+.+++.++.-.|+.+.|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445667777888888888888888888765
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=2.5 Score=39.42 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=23.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
..|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 4445555555555444432 2223334444445555555555555555443
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=95.11 E-value=1.8 Score=36.68 Aligned_cols=90 Identities=9% Similarity=-0.048 Sum_probs=59.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (601)
Q Consensus 276 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 355 (601)
..-+...|++++|..+|+-+...+.. +..-+..|..++-..+++++|...|......+ .-|+..+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 33455678888888888776665443 44455666666666777888887777665544 23444445566677778888
Q ss_pred HHHHHHHHHHHh
Q 007510 356 QKALELYEHMKS 367 (601)
Q Consensus 356 ~~A~~~~~~m~~ 367 (601)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888887777765
No 226
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=1.3 Score=41.18 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=26.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC
Q 007510 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (601)
Q Consensus 35 l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (601)
++..|++.+|..+|+...... +.+......+.+.+...|+.+.|..+++.+|
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 334555555555555555444 3333334444444555555555555555554
No 227
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=3.8 Score=39.96 Aligned_cols=258 Identities=12% Similarity=0.030 Sum_probs=124.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCChH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~ 109 (601)
+...++.++.+|+..+...++.. |.+..++..-+..+...+++++|.--..+- .+.......-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 44557888889999888888776 555555444333334445555544332211 1111111111122222222222
Q ss_pred HHHHHHH---------------HHHHcC-CCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 007510 110 GAFQVLR---------------LVQEAG-LKADCKLYTTLI-TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG- 171 (601)
Q Consensus 110 ~A~~~~~---------------~m~~~g-~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~- 171 (601)
+|.+.++ ...... -+|...++..|- .++.-.|+.++|.+.--..++.. ....+...+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 2222222 111111 123334444332 44556678888887776666542 22233333333
Q ss_pred -HHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------------HHHHHHhccCCHHHHHHHHHHhhhCC-CCCCCCHHH
Q 007510 172 -CAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-------------ALITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHIT 236 (601)
Q Consensus 172 -~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------------~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 236 (601)
+--.++.+.|...|++.+..+ |+-..-- .-.+-..+.|.+..|.+.+.+.+... ....++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 334677788888888777653 3322211 11122345666777777766655321 112233344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
|........+.|+..+|+.--+...+.+. .-...+..-..++...++|++|.+-|+...+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555666666666666665555431 11112222233344455666666666655443
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.96 E-value=0.082 Score=38.91 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSL--GLC---PN-TITYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
+++.+...|...|++++|+..|++..+. ... |+ ..++..+...+...|++++|.+.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555666666666555554321 011 11 2345555566666666666666666554
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.87 E-value=0.082 Score=38.91 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 007510 340 ISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (601)
Q Consensus 340 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (601)
.+++.+...|...|++++|+..|++..+. |- .|+ ..+++.+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555666666666666666555421 10 011 3345556666666666666666666543
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=6.2 Score=42.15 Aligned_cols=149 Identities=11% Similarity=0.078 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007510 60 DKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (601)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 138 (601)
...++...+..+...|++++|...|-+.. .-++ ..+|.-|....+..+--..++.+.+.|+. +...-..|+.+|.
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYi 442 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYI 442 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHH
Confidence 34456666777778899999988776532 2121 23455566666677777788888888854 4455567889999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 007510 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (601)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 218 (601)
+.++.+.-.++.+... .|.. ..-....+..+.+.+-.++|..+-.+... +......++ -..+++++|++
T Consensus 443 Klkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~ 511 (933)
T KOG2114|consen 443 KLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALR 511 (933)
T ss_pred HhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHH
Confidence 9988887766655443 2211 01123444555555555555554433321 222222222 23355666666
Q ss_pred HHHHh
Q 007510 219 VLAEM 223 (601)
Q Consensus 219 ~~~~~ 223 (601)
.+..+
T Consensus 512 yi~sl 516 (933)
T KOG2114|consen 512 YISSL 516 (933)
T ss_pred HHhcC
Confidence 55544
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.81 E-value=0.15 Score=50.40 Aligned_cols=99 Identities=12% Similarity=-0.009 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHH
Q 007510 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411 (601)
Q Consensus 336 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 411 (601)
+.+...++.+..+|.+.|++++|...|++..+. .|+. .+|..+..+|.+.|+.++|+..+++..+.+ .| .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 445678888889999999999999999988875 4553 358889999999999999999999988742 11 2
Q ss_pred HHHHHH--HHhhcCCHHHHHHHHHHHHHCCC
Q 007510 412 YSILLV--ACERKDDVEVGLMLLSQAKEDGV 440 (601)
Q Consensus 412 ~~~ll~--a~~~~g~~~~a~~~~~~~~~~g~ 440 (601)
|..+.. .+....+.++..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 322111 11223334466667777776654
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.61 E-value=1.4 Score=44.70 Aligned_cols=130 Identities=12% Similarity=0.124 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (601)
-.+.++..+-+.|-.+.|+++-..-. .-.....+.|+++.|.++-++. ++...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35555555555666665555433211 1223334556666665543222 24456666666666
Q ss_pred ccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (601)
Q Consensus 209 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 288 (601)
+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.++.+.....|- ++....++...|+.++.
T Consensus 359 ~~g~~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 359 RQGNIELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HTTBHHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HcCCHHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 6666666666665532 134444455556666555555555555441 44444444455555555
Q ss_pred HHHHH
Q 007510 289 CSVYD 293 (601)
Q Consensus 289 ~~~~~ 293 (601)
.+++.
T Consensus 422 v~lL~ 426 (443)
T PF04053_consen 422 VDLLI 426 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.54 E-value=2.4 Score=35.37 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=18.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (601)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (601)
++..+...+.......+++.+...+ ..+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3333434444444444444444433 2344444444444444
No 234
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.52 E-value=0.31 Score=44.52 Aligned_cols=118 Identities=20% Similarity=0.301 Sum_probs=75.1
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 007510 124 KADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV 198 (601)
Q Consensus 124 ~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 198 (601)
..|-.+|...+..+... +.++-....++.|.+.|++.|..+|+.|++.+-+..-. |. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-H
Confidence 34556666666655433 45566667778888888888988898888776543221 11 1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 007510 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHK 262 (601)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 262 (601)
.+..+.--|- .+-+-+++++++|.. +|+.||..+-..|+.++.+.+-. .+..++.-.|.+
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~--hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEW--HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHH--cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 1111111121 123457889999986 58999999999999999988764 344455444544
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.34 E-value=2.6 Score=35.09 Aligned_cols=84 Identities=13% Similarity=0.119 Sum_probs=43.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (601)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (601)
.++..+.+.+........++.+...+ +.+...++.++..|++.. ..+..+.++. . ++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 34555555566666666666666555 345556666666666543 2233333331 1 12233444555555556
Q ss_pred CHHHHHHHHHHH
Q 007510 319 KVEAAFEILQEA 330 (601)
Q Consensus 319 ~~~~a~~~~~~~ 330 (601)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 665555555543
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=94.23 E-value=4.9 Score=40.24 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 250 VDRAREVYKMIHKY-NIKG-TPEVYTIAINCCSQ---------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (601)
Q Consensus 250 ~~~a~~~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (601)
.+.|..+|.+.... .+.| ....|..+..++.. .....+|.++.++..+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 45677777777621 1222 23344333333221 12233444444555544433 5555555554445555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
+++.|...|++....+ +....+|......+.-+|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5555555555555443 22233333333334445555555555555433
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.21 E-value=2.5 Score=43.54 Aligned_cols=177 Identities=14% Similarity=0.152 Sum_probs=114.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHhc----cCCHHHH
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPD-----RVVFNALITACGQ----SGAVDRA 216 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~----~g~~~~A 216 (601)
.-+|.-+... +|| ....++....-.|+-+.+++.+.+..+.+ +.-. ...|+.++..++. ....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455555543 133 35667777778899999999888776542 2211 1224444444433 4568899
Q ss_pred HHHHHHhhhCCCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHhcC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 217 FDVLAEMNAEVHPVDPDHITIGA-LMKACANAGQVDRAREVYKMIHKYN--I-KGTPEVYTIAINCCSQTGDWEFACSVY 292 (601)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~~~~~~g~~~~a~~~~ 292 (601)
.+++..+... -|+...|.. -.+.+...|++++|.+.|+...... . ......+--+.-.+.-..+|++|.+.|
T Consensus 253 ~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 253 EELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 9999999874 466555543 3466778899999999999755321 1 112344556667788889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHHHH
Q 007510 293 DDMTKKGVIPDEVFLSALIDF-AGHAGKV-------EAAFEILQEAKN 332 (601)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~-~~~~g~~-------~~a~~~~~~~~~ 332 (601)
..+.+..-- +..+|.-+..+ +...|+. ++|.++|.++..
T Consensus 329 ~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999886432 34445444443 3456777 888889887643
No 238
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.85 E-value=7.2 Score=38.31 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
..+.+++.+..-.|+.++|.+..++|...
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34456666666677777777777776655
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=1 Score=43.72 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (601)
Q Consensus 341 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (601)
+++.|.-+|.+.+++..|++.-....+.+ ++|+...--=..+|...|+++.|+..|+++++ +.|+......
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~ 329 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARA 329 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHH
Confidence 44555556666666666666666666554 44555544455566666666666666666665 4555444443
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.67 E-value=6.2 Score=40.70 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=11.4
Q ss_pred HHhcCCHHHHHHHHHH
Q 007510 35 LIRQGRISECIDLLED 50 (601)
Q Consensus 35 l~~~g~~~~A~~~~~~ 50 (601)
|+-++++++|.++|+.
T Consensus 6 lflnn~~~eAe~~l~~ 21 (468)
T PF10300_consen 6 LFLNNRFKEAEELLSP 21 (468)
T ss_pred HHHCCCHHHHHHHHHh
Confidence 4557778888888773
No 241
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.53 E-value=3.3 Score=33.42 Aligned_cols=139 Identities=15% Similarity=0.134 Sum_probs=74.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007510 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (601)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 360 (601)
-.|..++..++..+..... +..-++.+|--....-+-+-..++++.+ |--.|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------hhhcchHHHHH
Confidence 3466666666666655542 3334444443333322322223333222 211121 23444444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC
Q 007510 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (601)
Q Consensus 361 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~ 440 (601)
-+-.+ ..+.......+..+...|+-+.--++..++.+. -.|++.....+..||.+.|+..++-+++.++-+.|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44332 234555667778888899998888888887653 467888888999999999999999999999888775
Q ss_pred C
Q 007510 441 I 441 (601)
Q Consensus 441 ~ 441 (601)
.
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.47 E-value=3.4 Score=33.36 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 007510 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (601)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 370 (601)
....+......|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555556666666666666665432 55566666666666666666666666666665553
No 243
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.38 E-value=3.1 Score=34.40 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=49.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007510 98 LMSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (601)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 175 (601)
-.....+.|++++|.+.|+.+..+-. +-...+--.|+.+|.+.+++++|...+++.++.....-..-|-..+.+++..
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 33445667788888888888776521 1234556667788888888888888888877763211123455555555443
Q ss_pred CC
Q 007510 176 GQ 177 (601)
Q Consensus 176 g~ 177 (601)
..
T Consensus 96 ~~ 97 (142)
T PF13512_consen 96 EQ 97 (142)
T ss_pred HH
Confidence 33
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=93.29 E-value=5.6 Score=39.82 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhhCC---CCC---HHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007510 75 KAIKEAFRFFKLVP---NPT---LSTFNMLMSVCAS---------SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (601)
Q Consensus 75 ~~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 139 (601)
-..+.|+.+|.+.. +-| ...|..+...+.. ..+..+|.++.+...+.+ +.|......+..+..-
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Confidence 35667888887655 323 3333332222111 234556777777777776 6688888888887788
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhccCCHHHH
Q 007510 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV---VFNALITACGQSGAVDRA 216 (601)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A 216 (601)
.++++.|..+|++....+ +-...+|........-+|+.++|.+.+++..+. .|... .....++.|+..+ +++|
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 888999999999888764 223455666666667789999999998886654 33332 2333444565544 5666
Q ss_pred HHHHHH
Q 007510 217 FDVLAE 222 (601)
Q Consensus 217 ~~~~~~ 222 (601)
.+++-.
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 666543
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.28 E-value=1.5 Score=40.31 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=24.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 240 LMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
|...+...|++++|..+|..+.+.-. +--+..+--|.....+.|+.++|...|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44444444444444444444433210 11123344444444444444444444444443
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=2 Score=41.76 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (601)
.+++.+..+|.+.+++..|++.-.+.+..+.. |.-.+-.-..++...|+++.|+..|+++.+.. +.|-.+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 34566666677777777777777776665433 55555555566666777777777777776653 33333444444443
Q ss_pred HhcCCHH-HHHHHHHHHH
Q 007510 350 SNAKNWQ-KALELYEHMK 366 (601)
Q Consensus 350 ~~~g~~~-~A~~~~~~m~ 366 (601)
-+..... ...++|..|-
T Consensus 336 ~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 3333332 2355555554
No 247
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.23 E-value=1.1 Score=41.84 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 007510 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNA 202 (601)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 202 (601)
.++..++..+..+|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|++.|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345667777888888888888888888765 55778888888888888888888888887764 477887777766
Q ss_pred HHHH
Q 007510 203 LITA 206 (601)
Q Consensus 203 li~~ 206 (601)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.22 E-value=3.6 Score=33.15 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=56.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAKAGQ 177 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~ 177 (601)
+.+..|+++.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+..-..+.. +|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3566677777777777766542 4466677777777777777777777777766542222222 22333345666777
Q ss_pred HHHHHHHHHHHHhCC
Q 007510 178 VAKAFGAYGIMRSKN 192 (601)
Q Consensus 178 ~~~A~~~~~~m~~~g 192 (601)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.20 E-value=1.5 Score=40.35 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~ 242 (601)
|+.-+..| +.|++..|...|...++... .-....+-.|..++...|++++|..+|..+.+.....+.-...+--|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444432 34556666666655554410 0011223335555566666666666665555432111111234444555
Q ss_pred HHHhcCChhHHHHHHHHHHhc
Q 007510 243 ACANAGQVDRAREVYKMIHKY 263 (601)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~ 263 (601)
...+.|+.++|..+|+.+.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555666666666666665554
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=2.5 Score=39.94 Aligned_cols=116 Identities=10% Similarity=-0.012 Sum_probs=65.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCH----HHHHHHHHHHHhcCC
Q 007510 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQ 249 (601)
Q Consensus 174 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~ 249 (601)
..|+..+|-..++++.+. .+.|...+.-.=++|...|+.+.-...++.+..+ ..+|. ++-..+.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 356666666666666654 3556666666666777777766666666665532 12332 222233334445666
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (601)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 294 (601)
+++|++.-++..+.+ +.|.-+-.++...+-.+|++.++.+...+
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 666666666666555 44444455555555566666666655443
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=3.2 Score=39.25 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=62.1
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCCHH
Q 007510 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVD 214 (601)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~ 214 (601)
..|+..+|-..++++++. .+.|..+++..=.+|.-.|+.+.-...+++....- .||...|. ...-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 345666666666666543 24455666666666666666666666666665431 22222221 2223344566666
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007510 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (601)
Q Consensus 215 ~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (601)
+|.+.-++..+.. +.|.-.-.++...+-..|+..++.+...+
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 7766666655421 23444444455555556666666665443
No 252
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.95 E-value=8.9 Score=36.68 Aligned_cols=130 Identities=18% Similarity=0.277 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC--
Q 007510 286 EFACSVYDDMTKKGVIPDEVFLSALIDFAGH--A----GKVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN-- 354 (601)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~-- 354 (601)
++.+.+++.|.+.|+.-+..+|-+....... . .....+..+|+.|++... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4455666777777776666555543332222 1 124567778888877642 2344445555433 2333
Q ss_pred --HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007510 355 --WQKALELYEHMKSIKLKPTV-STMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILLV 417 (601)
Q Consensus 355 --~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 417 (601)
.+.+...|+.+.+.|+..+- .-+.+-+-++..... ..++.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 35566677777776655432 233333333332221 3467778888888888877777665543
No 253
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.92 E-value=5.1 Score=38.28 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhC
Q 007510 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAK--A----GQVAKAFGAYGIMRSK 191 (601)
Q Consensus 145 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~ 191 (601)
+...+++.|.+.|+..+..+|-+....... . ....+|..+|+.|++.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 334555555555555555444432222221 1 1234555666666554
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.75 E-value=20 Score=40.22 Aligned_cols=132 Identities=16% Similarity=0.208 Sum_probs=77.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI----DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (601)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (601)
.++.--+.|.+.+|+.++ .|+...+..+. ..+...+.+++|.-.|+..-+. .-.+.+|-
T Consensus 914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~ 976 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK 976 (1265)
T ss_pred HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence 333334455555555443 34554444444 4444566777777666543221 23456788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 007510 351 NAKNWQKALELYEHMKSIKLKPTVST--MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428 (601)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 428 (601)
.+|+|++|..+..++.. ..+... -..|+.-+...+++-+|-++..+.... |. . .+..+++...+++|
T Consensus 977 ~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-~----av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-E----AVALLCKAKEWEEA 1045 (1265)
T ss_pred HhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-H----HHHHHhhHhHHHHH
Confidence 88888888888887763 233322 256788888899999998888876542 21 1 22334455556666
Q ss_pred HHHHHH
Q 007510 429 LMLLSQ 434 (601)
Q Consensus 429 ~~~~~~ 434 (601)
..+-..
T Consensus 1046 lrva~~ 1051 (1265)
T KOG1920|consen 1046 LRVASK 1051 (1265)
T ss_pred HHHHHh
Confidence 655543
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.50 E-value=9.9 Score=36.13 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCCHH---HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007510 199 VFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (601)
Q Consensus 199 ~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (601)
++..++.+|...+..+ +|..+++.+... .+-+| .++..-+..+.+.++.+.+.+++.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3445556666555433 444555555432 12222 23333455555566666666666666654
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.38 E-value=0.58 Score=29.76 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=10.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc
Q 007510 239 ALMKACANAGQVDRAREVYKMIHKY 263 (601)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (601)
.+...|.+.|++++|.++|+++.+.
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.28 E-value=3 Score=33.55 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=62.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCC
Q 007510 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN---TITYSILLVACERKDD 424 (601)
Q Consensus 348 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~ 424 (601)
+.+..|+++.|++.|.+....- +.+...||.-..++.-.|+.++|++-+++..+..-.-+ ...|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4667788888888888776542 34667788888888888888888888877765311112 1234444455677888
Q ss_pred HHHHHHHHHHHHHCC
Q 007510 425 VEVGLMLLSQAKEDG 439 (601)
Q Consensus 425 ~~~a~~~~~~~~~~g 439 (601)
.+.|+.-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888777665
No 258
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.19 E-value=8.5 Score=34.65 Aligned_cols=200 Identities=16% Similarity=0.067 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 007510 235 ITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 312 (601)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~- 312 (601)
.........+...+....+...+...... ........+......+...+.+..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44455555566666666666666555542 223344555556666666666777777776666544332 111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCC
Q 007510 313 FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQ 389 (601)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~ 389 (601)
.+...|+++.+...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777777777777644221 1223334444444666777888888777777643 22 35667777777777778
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 390 LPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
.++|...+...... .|+ ...+..+...+...+..+.+...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888877763 343 334444444444666677777777777653
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.14 E-value=4.6 Score=33.37 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=10.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 007510 240 LMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
++.+|.+.+++++|...+++..+
T Consensus 53 l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.02 E-value=13 Score=37.56 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 343 SSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 343 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
..+..++.+.|+.++|.+.|++|.+.... -+......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555556667777777777776543211 1233455567777777777777777766543
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=9.3 Score=34.63 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (601)
|.--..+|....++++|...+.+..+- .+.+...|.+ ...++.|.-+..++.. ++.-...++-...+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~k----lsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSK----LSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHH
Confidence 444445566667777776666655421 1222222221 1223445555555442 122233455566667
Q ss_pred HhcCChhHHHHHHHHHH
Q 007510 245 ANAGQVDRAREVYKMIH 261 (601)
Q Consensus 245 ~~~g~~~~a~~~~~~~~ 261 (601)
..+|.++.|-..+++.-
T Consensus 102 ~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAA 118 (308)
T ss_pred HHhCCcchHHHHHHHHH
Confidence 77777776666665543
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.96 E-value=18 Score=40.60 Aligned_cols=137 Identities=12% Similarity=0.070 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN----ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 240 (601)
|.-.++.--++|.+.+|+.++. |+...+. +...-+...+.+++|.-.|+..-+ ..-.
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----------lekA 971 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----------LEKA 971 (1265)
T ss_pred cHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----------HHHH
Confidence 3444444456666777766653 3333333 333334445666666666655321 1224
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (601)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (601)
+.+|..+|++.+|..+..++.... .--..+-..|+.-+...+++-+|-++..+.... ....+..+++...+
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~ 1042 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEW 1042 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHH
Confidence 556666777777776666553211 000111245666666667776666666655443 12223344445556
Q ss_pred HHHHHHHHH
Q 007510 321 EAAFEILQE 329 (601)
Q Consensus 321 ~~a~~~~~~ 329 (601)
++|..+-..
T Consensus 1043 ~eAlrva~~ 1051 (1265)
T KOG1920|consen 1043 EEALRVASK 1051 (1265)
T ss_pred HHHHHHHHh
Confidence 666555443
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.86 E-value=0.64 Score=29.57 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
++..+...|...|++++|.++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666554
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.73 E-value=10 Score=34.69 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=10.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 007510 346 MGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 346 i~~~~~~g~~~~A~~~~~~m~~ 367 (601)
.+-|.+.|.+..|..-++.|.+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHh
Confidence 3344455555555555555544
No 265
>PRK09687 putative lyase; Provisional
Probab=91.65 E-value=12 Score=35.42 Aligned_cols=238 Identities=14% Similarity=0.062 Sum_probs=128.5
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCC
Q 007510 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEP 160 (601)
Q Consensus 85 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~~ 160 (601)
+.+.++|.......+..+...|.. .+...+..+.. .+|...-...+.+++..|+. +++...+..+... .+
T Consensus 30 ~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~ 103 (280)
T PRK09687 30 RLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DK 103 (280)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CC
Confidence 334466776666677777766643 33333333433 34566666667777777763 3566666665333 56
Q ss_pred CHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHH
Q 007510 161 NVHTYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (601)
Q Consensus 161 ~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 235 (601)
+..+-...+.++...+.. ..+...+..... .++..+-...+.++++.++ +++...+-.+.. .+|..
T Consensus 104 d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-----d~~~~ 174 (280)
T PRK09687 104 SACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK-----DPNGD 174 (280)
T ss_pred CHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc-----CCCHH
Confidence 666666666666655421 223333333322 2345555566667777665 445555555543 23444
Q ss_pred HHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 236 TIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (601)
Q Consensus 236 ~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (601)
+-...+.++.+.+ ....+...+..+.. .++..+....+.++.+.|+. .|...+-+..+.+ + .....+.++
T Consensus 175 VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~AL 245 (280)
T PRK09687 175 VRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAA 245 (280)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHH
Confidence 4444555555542 13345555544443 34556666777777777764 4555555555442 2 133556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (601)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 349 (601)
...|.. +|...+..+.+.. +|..+-...+.++
T Consensus 246 g~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 246 GELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 677764 5666666666542 3555554444444
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.61 E-value=11 Score=36.34 Aligned_cols=127 Identities=15% Similarity=0.092 Sum_probs=68.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-
Q 007510 239 ALMKACANAGQVDRAREVYKMIHKYNI-----KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLS- 308 (601)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~- 308 (601)
++..++.-.+.++++.+.|+...+... .....++..|.+.|.+..++++|.-+..+..+ .++..-..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555666777777665544211 11234567777777777777776655544322 22221111222
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 309 ----ALIDFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHM 365 (601)
Q Consensus 309 ----~li~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 365 (601)
.+.-++...|++..|.+.-++..+ .|-.+ .......+.+.|...|+.+.|+.-|++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223355566666666666555433 33211 2334456677788888888887777654
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.56 E-value=2.5 Score=39.57 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 007510 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLSAL 310 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 310 (601)
++..++..+...|+.+.+...++++.... +.+...|..++.+|.+.|+...|+..|+.+.. .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 55666777777777777777777777766 66677777777777777777777777776643 4666665555444
Q ss_pred HHH
Q 007510 311 IDF 313 (601)
Q Consensus 311 i~~ 313 (601)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 433
No 268
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.24 E-value=13 Score=33.10 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=104.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (601)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (601)
|-..-|+-=|....... |.-+.+||-|.-.+...|+++.|.+.|+...+.++.-+-...|.-|.. --.|++..|.+=+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHH
Confidence 34444444455444433 344678999988899999999999999998887655333333333332 2358888888777
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007510 328 QEAKNQGISVGI--ISYSSLMGACSNAKNWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (601)
Q Consensus 328 ~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (601)
...-+.+ +.|+ ..|--++ -..-++.+|..-+ ++.. ..|..-|..-|-.|.-..-.++ .+++++..-
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~- 225 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE--TLMERLKAD- 225 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH--HHHHHHHhh-
Confidence 7666654 2222 2222111 2233455665433 3333 3565667665555543222222 234444331
Q ss_pred CCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 405 LCPN-------TITYSILLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 405 ~~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
-..+ ..||--+..-+...|+.++|..+|+-.+..
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1211 346777788889999999999999887753
No 269
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.24 E-value=28 Score=37.03 Aligned_cols=302 Identities=13% Similarity=0.088 Sum_probs=158.9
Q ss_pred HcCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCC
Q 007510 120 EAGLKADCKLYT-----TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV--AKAFGAYGIMRSKN 192 (601)
Q Consensus 120 ~~g~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g 192 (601)
..|++.+..-|. .+|+-+...+.+..|.++-..+...-.. +...|.....-+.+..+. +++++..++=.+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 456666666554 4566677778888888887776522111 145666666666665322 23333333222222
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC------
Q 007510 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYN------ 264 (601)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------ 264 (601)
. .+.++|..+.+--...|+.+-|..+++.=......++ .+..-+...+.-+...|+.+....++-.+...-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 3456788888777788999999888764222111110 111224445566677777777777665554421
Q ss_pred -----CCCCHHHHHHHHHH--------HHhcCCHHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHhcCCHHHH--
Q 007510 265 -----IKGTPEVYTIAINC--------CSQTGDWEFACSVYD--DMT----KKGVIPDEVFLSALIDFAGHAGKVEAA-- 323 (601)
Q Consensus 265 -----~~~~~~~~~~li~~--------~~~~g~~~~a~~~~~--~m~----~~~~~p~~~~~~~li~~~~~~g~~~~a-- 323 (601)
.+.....|.-++.- +.+.++-.++...|. ... ..+..|+ ......++.+.....-.
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~k 659 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAK 659 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHH
Confidence 11112222222220 111111112221111 100 0122222 22333344433321111
Q ss_pred --------HHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 007510 324 --------FEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (601)
Q Consensus 324 --------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (601)
..+.+.+.. .+......+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-.
T Consensus 660 a~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 660 ALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 111111211 2222333445555566777788888888777666 578778877788888888887766
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 395 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
++-+.++ .+.-|.-...+|.+.|+.++|.+++.+..
T Consensus 736 kfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 736 KFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 6544432 24557777788888888888888775543
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.15 E-value=6.5 Score=34.34 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555555555555555555555554322221 2234445555555555555555544443
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.07 E-value=23 Score=35.84 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 308 SALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (601)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (601)
..+...+-+.|+.++|.+.++++.+.... .+..+...|+.++...+.+.++..++.+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34444555667777777777777654311 23335556677777777777777777665543
No 272
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.83 E-value=27 Score=37.72 Aligned_cols=177 Identities=15% Similarity=0.165 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA----CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 240 (601)
...-+..+.+...++-|+.+-.. .+. |..+...+... +.+.|++++|..-+-+... -++|. .+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~---~le~s-----~V 403 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG---FLEPS-----EV 403 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc---cCChH-----HH
Confidence 34455666666677777665432 222 33333334333 3456777777777666543 23332 24
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (601)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (601)
+.-|....+...-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 4445555556666666777777764 334555677777777777777666655443 2221 11234455556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
++|..+-..... +......+ +-..+++++|.+.+..+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 666555443322 23333333 345667777777776654
No 273
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.80 E-value=23 Score=35.35 Aligned_cols=398 Identities=11% Similarity=0.084 Sum_probs=227.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC----C---C-----------CCHHHHHHHHH
Q 007510 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P---N-----------PTLSTFNMLMS 100 (601)
Q Consensus 39 g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~---~-----------~~~~~~~~li~ 100 (601)
.+++.....+....+.. +....++...+-.+-+.+.+++|++.|..- . + +|...=+..+.
T Consensus 59 ~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~ 136 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAH 136 (549)
T ss_pred hhHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHH
Confidence 44555555555555543 334444333333455678888888877421 1 1 12222345667
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhc--------CChhHHHHHH-------HHHHHC-----
Q 007510 101 VCASSKDSEGAFQVLRLVQEAGL----KADCKLYTTLITTCAKS--------GKVDAMFEVF-------HEMVNA----- 156 (601)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~--------g~~~~a~~~~-------~~m~~~----- 156 (601)
.+...|++.+++.+++++...=. .-+..+|+.++-++++. ...+-.-..| .+|...
T Consensus 137 sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y 216 (549)
T PF07079_consen 137 SLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPY 216 (549)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchH
Confidence 78899999999999998876433 36888999877776654 1222222222 222211
Q ss_pred -CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhhhCCCCC--
Q 007510 157 -GIEPNVHTYGALIDGCAK--AGQVAKAFGAYGIMRSKNVKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPV-- 230 (601)
Q Consensus 157 -g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-- 230 (601)
.+.|-......++....- ..+..--.++++.....-+.|+-.. ...++..+.. +.+++..+-+.+... .+
T Consensus 217 ~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~--~i~~ 292 (549)
T PF07079_consen 217 EKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS--KIEK 292 (549)
T ss_pred HhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH--hHHH
Confidence 234444444555544332 2233344455554444445565433 3344444444 445554444433221 01
Q ss_pred --CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHH----hcCCHHHHHHHHHHHHHCC
Q 007510 231 --DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-----EVYTIAINCCS----QTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 231 --~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~ 299 (601)
+.-..++..++....+.++...|.+.+..+.-.+...+. .+-..+-+..+ ...+..+=+.++......+
T Consensus 293 Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D 372 (549)
T PF07079_consen 293 LKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD 372 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc
Confidence 112457888999999999999999988877664321110 01122333333 1223344455666666554
Q ss_pred CCCCHHHHHHHHHH---HHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhC
Q 007510 300 VIPDEVFLSALIDF---AGHAGK-VEAAFEILQEAKNQGISVGIISYSSLM----GACSN---AKNWQKALELYEHMKSI 368 (601)
Q Consensus 300 ~~p~~~~~~~li~~---~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~ 368 (601)
+. .......++.+ +-+.|. -++|..+++.+.+-. +-|...-|.+. ..|.+ ...+..-.++-+-+.+.
T Consensus 373 iD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~ 450 (549)
T PF07079_consen 373 ID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV 450 (549)
T ss_pred cc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 42 22222333332 333444 788999999887753 33444444333 33332 34456666666677788
Q ss_pred CCCCCHH----HHHHHHHH--HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC
Q 007510 369 KLKPTVS----TMNALITA--LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442 (601)
Q Consensus 369 ~~~~~~~----~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p 442 (601)
|+.|-.+ .-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-......++++|..++..+ .|
T Consensus 451 gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~ 523 (549)
T PF07079_consen 451 GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PP 523 (549)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CC
Confidence 8777433 34445443 4568999999877777766 8899999999988888999999999999764 45
Q ss_pred CHHHHHHHH
Q 007510 443 NLVMFKCII 451 (601)
Q Consensus 443 ~~~~~~~li 451 (601)
+..++++=+
T Consensus 524 n~~~~dskv 532 (549)
T PF07079_consen 524 NERMRDSKV 532 (549)
T ss_pred chhhHHHHH
Confidence 666665543
No 274
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.78 E-value=12 Score=32.09 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
+.++.+...+++|+...+..+++.+.+.|++....+++.- ++-+|.......+-.+. +....+.++=-.|.+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~------~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY------HVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh------cccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 3444555667777777777777777777776665555432 23344333332221111 222333333333332
Q ss_pred c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 263 Y-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 263 ~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
+ + ..+..+++.+...|++-+|+++.+..... +......++.+..+.++...-..+++-..+
T Consensus 87 RL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2 24566677777788888888777664322 122234556666666666655555555544
No 275
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.77 E-value=4 Score=30.86 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=50.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHH
Q 007510 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~-~~g~~p~~~~~~~li~~~ 454 (601)
+.-++.+-++.+....+.|++....+.++||.+.+|+..|.++|+-++ +.|. +...|..+++-+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHHH
Confidence 344666777777777899999999999999999999999999999877 4343 455788877653
No 276
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.75 E-value=23 Score=35.27 Aligned_cols=131 Identities=13% Similarity=0.149 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHH-HHH
Q 007510 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGA 239 (601)
Q Consensus 162 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~ 239 (601)
..+|...++.-.+..-++.|..+|-+..+.| +.+++..+++++.-++ .|+...|..+|+--... -||... -.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~----f~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK----FPDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh----CCCchHHHHH
Confidence 4566777777777777777888888877776 5667777777776554 46667777777654432 233332 234
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 240 LMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
.+.-+.+.++-+.|..+|+....+- ..+ ...|..+|..-..-|+...+..+=+.|.+.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 4555667777777888887443321 111 256777777777777777777666666554
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.54 E-value=12 Score=31.71 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=27.5
Q ss_pred hccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007510 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (601)
Q Consensus 208 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (601)
...++.+++..++..+..- .+-.+...++...+ +.+.|++.+|.++|+.+...
T Consensus 21 l~~~~~~D~e~lL~ALrvL-RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL-RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh-CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 3455666666666665532 11122223333332 45666677777777666554
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.46 E-value=4.4 Score=35.38 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHC---CCCCC----HHH
Q 007510 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEVGLMLLSQAKED---GVIPN----LVM 446 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---g~~p~----~~~ 446 (601)
.+..+..-|++.|+.++|++.|.++.+....|.. ..+..+++.+.-.+++..+.....++... |-+.+ ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666666666666666666666655434433 23455666666666666666666655432 11111 235
Q ss_pred HHHHHHHHHhhHHHHHHh
Q 007510 447 FKCIIGMCSRRYEKARTL 464 (601)
Q Consensus 447 ~~~li~~~~~~~~~a~~~ 464 (601)
|..|..+..|.|.+|.+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~ 135 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAEL 135 (177)
T ss_pred HHHHHHHHhchHHHHHHH
Confidence 666666666667766554
No 279
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.36 E-value=5.1 Score=30.70 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 007510 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~g~~p~~~~~~~li~~~ 454 (601)
+..+-++.+....+.|++....+.++||.+.+++..|.++|+-++. .|.. ...|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHH
Confidence 5566677777778999999999999999999999999999998874 3433 23888887654
No 280
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=5.6 Score=40.81 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007510 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (601)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 110 (601)
.|.+++-.|+++.|-.++..+.+. .+..++.+.-++|-.++|+++- ++||- -.....+.|+++.
T Consensus 592 eyqt~vmrrd~~~a~~vLp~I~k~--------~rt~va~Fle~~g~~e~AL~~s---~D~d~-----rFelal~lgrl~i 655 (794)
T KOG0276|consen 592 EYQTLVLRRDLEVADGVLPTIPKE--------IRTKVAHFLESQGMKEQALELS---TDPDQ-----RFELALKLGRLDI 655 (794)
T ss_pred HHHHHhhhccccccccccccCchh--------hhhhHHhHhhhccchHhhhhcC---CChhh-----hhhhhhhcCcHHH
Confidence 344555566666665544444321 2223334444555555555431 11211 1122345566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (601)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (601)
|.++..+.. +..-|..|.++..+.+++..|.+-|..... |..|+-.+...|+.+....+-....+
T Consensus 656 A~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 656 AFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 666554432 344566666666666666666666655442 44555555566665544444444444
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007510 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (601)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (601)
.|. .|.-.-+|...|+++++.+++..
T Consensus 721 ~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 721 QGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 431 22223345555666666666544
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.02 E-value=13 Score=31.47 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=33.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 174 (601)
-.+.++.+.+..++..+.-. .|.... -..-...+.+.|++.+|..+|+++... .|....-.+|+..|..
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLY 89 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHH
Confidence 34455666666666666543 232211 111223345666666666666666554 2333333444444433
No 282
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.68 E-value=17 Score=32.51 Aligned_cols=201 Identities=17% Similarity=0.128 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007510 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 277 (601)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 277 (601)
..+......+...+.+..+...+...... .........+......+...+....+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 33444444445555555555544443320 0112223333444444444555555555555554433221 111222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 278 -CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (601)
Q Consensus 278 -~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 354 (601)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56666666666666666544211 012223333333355667777777777776665421135666677777777777
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 355 WQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 355 ~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
++.|...+....... |+ ...+..+...+...+..+++...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888777777542 33 33444444444466667888877777766
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.76 E-value=1.3 Score=26.64 Aligned_cols=24 Identities=21% Similarity=0.133 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m 188 (601)
|+.|...|.+.|++++|+.+|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666653
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.59 E-value=0.81 Score=27.16 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=17.2
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (601)
Q Consensus 259 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (601)
+..+.+ |.+..+|+.+...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334433 445666666666666666666654
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.93 E-value=25 Score=32.33 Aligned_cols=181 Identities=13% Similarity=0.077 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALID 170 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~ 170 (601)
.|+.- ..-.+.|++++|...|+.+..+.. +-...+.-.++-++-+.+++++|+...++..+.- -.||. .|-.-|.
T Consensus 37 LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylk 114 (254)
T COG4105 37 LYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLK 114 (254)
T ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHH
Confidence 34443 445678999999999999986531 1234566667778888999999999999877652 23332 3444444
Q ss_pred HHHh-------cCCHHHHHHH---HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 007510 171 GCAK-------AGQVAKAFGA---YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (601)
Q Consensus 171 ~~~~-------~g~~~~A~~~---~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 240 (601)
+++. ..+...+.+. |++++.+ -||. .=...|..-+..+... + ...=..+
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~---L---A~~Em~I 173 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA---L---AGHEMAI 173 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH---H---HHHHHHH
Confidence 4442 2233333333 3333333 2221 1111111111111100 0 0011235
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 241 MKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
.+-|.+.|.+..|..-++.|.+. .+.+ ...+-.+..+|...|..++|.+.-+-+...
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 56677777777777777777765 2322 234556667777778777777765555443
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.92 E-value=1.4 Score=25.91 Aligned_cols=25 Identities=12% Similarity=0.014 Sum_probs=10.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHH
Q 007510 377 MNALITALCDGDQLPKTMEVLSDMK 401 (601)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~ 401 (601)
|..+...|...|++++|+..|++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3334444444444444444444433
No 287
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.90 E-value=19 Score=30.91 Aligned_cols=134 Identities=14% Similarity=0.231 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 007510 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (601)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 192 (601)
+.++.+.+.+++|+...+..+++.+.+.|++.....+ ...++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3445555667777777777777777777765544433 33333344333332222221 2223333333333322
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007510 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (601)
Q Consensus 193 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (601)
=...+..++..+...|++-+|.++....... +......++.+..+.++...-..+|+-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~------~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV------DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc------ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0023455666677777777777776654211 111123345555555555555555544444
No 288
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.65 E-value=24 Score=31.90 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=16.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007510 350 SNAKNWQKALELYEHMKSIKLKPTVSTM 377 (601)
Q Consensus 350 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (601)
+..+++.+|+++|+++....+..+..-|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 4556666777777776655444444444
No 289
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.54 E-value=1.7 Score=26.11 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 411 TYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 411 t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
+|..|...|.+.|++++|.+++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777888888888888887744
No 290
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.34 E-value=52 Score=35.37 Aligned_cols=150 Identities=9% Similarity=0.044 Sum_probs=84.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCh
Q 007510 31 SYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (601)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 108 (601)
.++-|++.+.+++|+.+-+.....- +. ...+...++.-+...|++++|-...-.|...+...|.--+..+...++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 3445889999999998877655332 21 2222233333345567888888888888878888888877777777665
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------------CC-------CCCHHHHHHHH
Q 007510 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------------GI-------EPNVHTYGALI 169 (601)
Q Consensus 109 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------g~-------~~~~~~~~~li 169 (601)
..... -+.......+...|..++..+.. .+. ..+++....- .. .-+...-..|+
T Consensus 440 ~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La 512 (846)
T KOG2066|consen 440 TDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLA 512 (846)
T ss_pred chhhc---cCCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHH
Confidence 43322 22222112345566666665554 111 1111111110 00 11222334477
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007510 170 DGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (601)
..|...++++.|++++-..+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 77788888888888877665
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.22 E-value=31 Score=32.75 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=89.9
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCCCH----
Q 007510 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSGKVDAMFEVFHEMVNA--------GIEPNV---- 162 (601)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~~~~---- 162 (601)
.+.|+++.|..++.+....- ..|+. ..|+.-...+.+..+++.|..++++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677777877777766432 12321 23444444443333788877776664432 122332
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 007510 163 -HTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (601)
Q Consensus 163 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 238 (601)
.+...++.+|...+..+ +|.++++.+.... +-....+..-+..+.+.++.+++.+.+.+|... +.-....+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~---~~~~e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS---VDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh---cccccchHH
Confidence 45677788888877655 4556666665442 222445545567777789999999999999875 221223444
Q ss_pred HHHHHH---HhcCChhHHHHHHHHHHhcCCCCC
Q 007510 239 ALMKAC---ANAGQVDRAREVYKMIHKYNIKGT 268 (601)
Q Consensus 239 ~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~ 268 (601)
..+..+ .... ...+...++.+....+.|.
T Consensus 160 ~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 160 SILHHIKQLAEKS-PELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCC
Confidence 444443 3332 3445555555544433443
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.53 E-value=22 Score=30.44 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH--H
Q 007510 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNAL--I 381 (601)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l--i 381 (601)
.|...+. +++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-+. -..-| .
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3443333 345566777777777777766432221 11222334566777778888887776543333322 11111 2
Q ss_pred HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 382 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (601)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (601)
..+..+|.+++.....+.+-..+-+-....-..|.-+-.+.|++..|.+.|..+...-..|...
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 2455778888777776666544322233344566667778888888888888887654445443
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.14 E-value=2.3 Score=24.91 Aligned_cols=32 Identities=28% Similarity=0.180 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 007510 410 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (601)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~ 443 (601)
.+|..+...+...|++++|...|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4688889999999999999999999987 4443
No 294
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.07 E-value=16 Score=32.06 Aligned_cols=128 Identities=11% Similarity=0.080 Sum_probs=83.7
Q ss_pred hhHHHHHHHH---hcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC-CCCHHHHHH----
Q 007510 27 EQLHSYNRLI---RQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNM---- 97 (601)
Q Consensus 27 ~~~~~~~~l~---~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~---- 97 (601)
.....|..++ ..+.. +.....+.+...+. ..........+.......+++++|..-++... .+.-..+..
T Consensus 52 ~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 52 EASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 3444555555 34555 66677777776652 12334444556677788889999998888654 333333333
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007510 98 -LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (601)
Q Consensus 98 -li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (601)
|.+...+.|.+++|+.+++.....+. .......-.+++...|+-++|+.-|+.....+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 44567788999999998887765432 22334445678889999999999999888764
No 295
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.06 E-value=15 Score=28.09 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007510 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (601)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 117 (601)
..+.++|-.+-+.+...+. ....+..+-+....+.|++++|..+....+.||...|.++-. .+.|-.+.+..-+.+
T Consensus 18 ~HcHqEA~tIAdwL~~~~~--~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKGE--SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred chHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 3467788888888877652 233332222333456688999998888888888888887754 345656666666666
Q ss_pred HHHcCCCCCHHHH
Q 007510 118 VQEAGLKADCKLY 130 (601)
Q Consensus 118 m~~~g~~~~~~~~ 130 (601)
|-..| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 66665 4444333
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.02 E-value=1.3 Score=26.32 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 007510 161 NVHTYGALIDGCAKAGQVAKA 181 (601)
Q Consensus 161 ~~~~~~~li~~~~~~g~~~~A 181 (601)
|..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555444
No 297
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.73 E-value=40 Score=32.66 Aligned_cols=165 Identities=14% Similarity=0.035 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTK-KGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIIS 341 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~ 341 (601)
.|..+..++-+.-++.+++.+-+.-.. .|..| ......++..+..-.+.++++++.|+...+.- ......+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 445555555555555555555544332 22222 11233345556666677888888887765421 1223457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCH-HHH-----HHHHHHHHcCCChhHHHHHHHHHH----hCCCCC
Q 007510 342 YSSLMGACSNAKNWQKALELYEHMKS----IKLKPTV-STM-----NALITALCDGDQLPKTMEVLSDMK----SLGLCP 407 (601)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~-~~~-----~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p 407 (601)
+..|...|.+..++++|.-+.....+ .++ .|. .-| -.|.-++...|+..+|.+.-++.. ..|-+|
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 77888888888888888766655443 221 121 112 234556777888888887777643 344222
Q ss_pred C-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 408 N-TITYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 408 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
. ......+.+.|...|+.+.|+.-++...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2234566777888999998888777654
No 298
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.42 E-value=64 Score=34.79 Aligned_cols=180 Identities=15% Similarity=0.167 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCCCc--hHHHHHHHHHHHh-hhHHHHHHHHHHhhCC----CCCHH-----HHHHHHHHHHhcCChHH
Q 007510 43 ECIDLLEDMERKGLLDM--DKVYHARFFNVCK-SQKAIKEAFRFFKLVP----NPTLS-----TFNMLMSVCASSKDSEG 110 (601)
Q Consensus 43 ~A~~~~~~m~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~----~~~~~-----~~~~li~~~~~~g~~~~ 110 (601)
.|++.++.+.+....++ ...++..++.++. ...+++.|...+.+.. +++.. .-..+++.+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 45666776664332232 3344555555544 4456888888877542 22211 2234556666666555
Q ss_pred HHHHHHHHHHcC----CCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--hcCCHHH
Q 007510 111 AFQVLRLVQEAG----LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYGALIDGCA--KAGQVAK 180 (601)
Q Consensus 111 A~~~~~~m~~~g----~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~~ 180 (601)
|...++...+.- ..+-...|..+ +..+...++...|.+.++.+...- ..|-..++..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888887766532 12223344444 333333478888988888876532 2444555555555544 3455666
Q ss_pred HHHHHHHHHhCC---------CCCCHHHHHHHHHHH--hccCCHHHHHHHHHHh
Q 007510 181 AFGAYGIMRSKN---------VKPDRVVFNALITAC--GQSGAVDRAFDVLAEM 223 (601)
Q Consensus 181 A~~~~~~m~~~g---------~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~ 223 (601)
+.+..+++.... ..|-..+|..+++.+ ...|+++.+.+.++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777766663221 134456677676654 4557766666555443
No 299
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.38 E-value=60 Score=34.45 Aligned_cols=181 Identities=15% Similarity=0.088 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhc
Q 007510 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT-----CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKA 175 (601)
Q Consensus 108 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~ 175 (601)
...|.+.++...+.| +......+..+ ++...+.+.|...|+...+ .| +.....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777777665 22222222222 3355678888888888765 33 333455666666653
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH--hc
Q 007510 176 G-----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA--NA 247 (601)
Q Consensus 176 g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~ 247 (601)
. +.+.|+.+|.+.-..| .|+....-..+..... ..+...|.++|......+ . ++..-+..++.... -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~-~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--H-ILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--C-hHHHHHHHHHHHhCCCcC
Confidence 2 5566777777777766 3444443333322222 245667777777766542 1 22222211111111 22
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007510 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (601)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 300 (601)
.+...|..++.+..+.| .+...--...+..+.. ++++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 35677777777777766 3222222222233333 666666666666655554
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.15 E-value=23 Score=29.52 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=32.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 103 ASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
...++++++..+++.|.-. .|+ ..++... .+...|++++|.++|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 3467778888888777654 332 2333333 356778888888888888765
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.94 E-value=17 Score=34.33 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379 (601)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 379 (601)
...+...++..-....+++.+...+-++.... ..++.. -.+.++.+.+ -+.++++.++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 33344444444444455566655555554321 111111 1122222222 244566666666566666666666666
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 007510 380 LITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
+|+.+.+.+++.+|.++.-.|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666555443
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.40 E-value=2.5 Score=24.63 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=8.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHH
Q 007510 380 LITALCDGDQLPKTMEVLSDMK 401 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~ 401 (601)
+...|.+.|++++|++.|++..
T Consensus 7 lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444444444444433
No 303
>PRK09687 putative lyase; Provisional
Probab=83.23 E-value=43 Score=31.84 Aligned_cols=233 Identities=12% Similarity=0.004 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH----HHHHHHHHHhhhCCCCCCCCHH
Q 007510 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV----DRAFDVLAEMNAEVHPVDPDHI 235 (601)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~ 235 (601)
+|.......+.++...|.. .+...+..+.. .+|...-...+.+++..|+. +++...+..+..+ .++..
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~----D~d~~ 106 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE----DKSAC 106 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc----CCCHH
Confidence 4554555555555555542 23333333322 22344444445555555542 3455555544221 34444
Q ss_pred HHHHHHHHHHhcCCh-----hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 236 TIGALMKACANAGQV-----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (601)
+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ .++...+-.+... +|...-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHH
Confidence 444444444443321 112222222211 2244555555666665555 3455555555442 233333444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 007510 311 IDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (601)
Q Consensus 311 i~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 389 (601)
+.++.+.+ ....+...+..+.. .++..+-...+.++.+.|+. .|...+-...+. ++ .....+.++...|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~---~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK---GT--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCC
Confidence 44444432 13344444444443 23555566666666666663 444444444432 22 12345566666666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007510 390 LPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (601)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 419 (601)
. +|+..+.++.+. .||..+-...+.+|
T Consensus 251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 251 K-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred H-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 4 566666666542 34555544444444
No 304
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.93 E-value=37 Score=30.96 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQ 119 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~ 119 (601)
.|.-...+|-...++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34444444555555555555444443
No 305
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.65 E-value=43 Score=31.49 Aligned_cols=116 Identities=12% Similarity=0.124 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cCC-hhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAK-SGK-VDAMFEVFHEMVN-AGIEPNVHTYGALIDGCAKAGQVAKAF 182 (601)
Q Consensus 107 ~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~-~g~-~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~ 182 (601)
...+|+.+|+.... ..+--|..+...|++.... .+. ...--++.+-+.. .|-.++..+...++..++..+++.+-+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666653221 2234455555556655544 221 1112233333332 223566666777777777777777777
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007510 183 GAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (601)
Q Consensus 183 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (601)
++++.-... +..-|...|..+|+.....|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777766544 4455677777777777777777766666554
No 306
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=82.56 E-value=73 Score=34.01 Aligned_cols=147 Identities=9% Similarity=0.055 Sum_probs=33.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 007510 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (601)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 368 (601)
....+.++.+-+..+......++..|.+.|-.+.+..+.+.+-.+-. ...-|...+.-+.++|+......+-..+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33444444433334666677788888888888888888776644321 1234555555666666665555554444422
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC---ERKDDVEVGLMLLSQAKEDGVIPNLV 445 (601)
Q Consensus 369 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (601)
....+......++....... + +. +.-++-....-+ .+.|++.+|.+.+-.+.+.++.|...
T Consensus 468 ~~~~~~~~~~~ll~~i~~~~-----------~----~~-~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 468 YCNNGEPLDDDLLDNIGSPM-----------L----LS-QRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCcccHHHHHHhcchh-----------h----hh-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 21122112222222111111 0 11 111111111111 33477777777777777777777765
Q ss_pred HHHHHHHH
Q 007510 446 MFKCIIGM 453 (601)
Q Consensus 446 ~~~~li~~ 453 (601)
-..-|.++
T Consensus 532 ~~~LL~d~ 539 (566)
T PF07575_consen 532 WPLLLCDA 539 (566)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 55555443
No 307
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.50 E-value=21 Score=33.74 Aligned_cols=105 Identities=11% Similarity=0.107 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 007510 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (601)
Q Consensus 192 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (601)
|.+....+...++..-....+++.+...+-.++....- ..|+. +-.+.++.+. .-++++++.++..-...|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 33444444444444444455566666666555432100 01111 1111222222 235556666666666667777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTKK 298 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 298 (601)
+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777666665544
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.15 E-value=16 Score=32.23 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=39.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCC-CCCHHHHHHHHHHHHhcCChh
Q 007510 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-DPDHITIGALMKACANAGQVD 251 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~ 251 (601)
.+.|+ +.|++.|-++...+.--++.....|..-|. ..+.+++.+++.+......+- .+|...+.+|.+.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 456666666655553333333333333333 455566666655554432222 445555666666666666555
Q ss_pred HH
Q 007510 252 RA 253 (601)
Q Consensus 252 ~a 253 (601)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 54
No 309
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.95 E-value=15 Score=31.66 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 392 KTMEVLSDMKSLGLCPNT-ITYSILLVACERKD----D-------VEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (601)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g----~-------~~~a~~~~~~~~~~g~~p~~~~~~~li~~~ 454 (601)
+|+.-|++.+. +.|+. .++..+..++...+ + +++|...|++... .+|+..+|+.-+.+.
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 34444444444 55653 45555555554322 2 3344444444444 568888887777764
No 310
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.38 E-value=15 Score=27.89 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555444
No 311
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.31 E-value=85 Score=33.35 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhcc
Q 007510 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDG-----CAKAGQVAKAFGAYGIMRS-------KNVKPDRVVFNALITACGQS 210 (601)
Q Consensus 143 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 210 (601)
...+.++++...+.| +...-..+..+ +....+.+.|+..|+.+.. .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888888765 33333333332 4456789999999998876 44 233555666666664
Q ss_pred C-----CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----
Q 007510 211 G-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS---- 280 (601)
Q Consensus 211 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---- 280 (601)
. +.+.|+.++......+ .|+.......+..... ..+...|.++|...-+.|.. ..+-.+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 2 5677888888776542 4554444333322222 24567899999888888742 33333333222
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007510 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (601)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 335 (601)
-..+...|..++++.-+.|. |-..--...+..+.. ++.+.+...+..+...+.
T Consensus 376 v~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 23467888888888888873 332222233334444 777777777777766653
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.28 E-value=4.5 Score=23.46 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 410 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..|..+...+...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567788899999999999999999887
No 313
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.43 E-value=21 Score=27.34 Aligned_cols=86 Identities=10% Similarity=0.152 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (601)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (601)
..++|..+-+.+...+-. ...+-..-+..+...|++++|..+.+.+. .||...|.+|.. .+.|..+.+..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 345666666665543311 22222222344556677777777666653 567776666644 35566666666666
Q ss_pred HHHhCCCCCCHHHH
Q 007510 187 IMRSKNVKPDRVVF 200 (601)
Q Consensus 187 ~m~~~g~~p~~~~~ 200 (601)
+|..+| .|....|
T Consensus 93 rla~sg-~p~lq~F 105 (115)
T TIGR02508 93 RLAASG-DPRLQTF 105 (115)
T ss_pred HHHhCC-CHHHHHH
Confidence 666655 3444443
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.25 E-value=61 Score=30.49 Aligned_cols=59 Identities=10% Similarity=-0.015 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (601)
Q Consensus 272 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (601)
++.....|..+|.+.+|.++.+..+..+.- +...+-.++..++..|+--.+.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444556677777777777777776665432 56667777777777777666665555543
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.00 E-value=6.1 Score=24.21 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMT 296 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 296 (601)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345556666666666666666665543
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.99 E-value=40 Score=28.20 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 007510 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (601)
Q Consensus 210 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (601)
.++.+++..+++.|.-- .+-.+...++...+ +...|++++|.++|+.+.+.+
T Consensus 23 ~~d~~D~e~lLdALrvL-rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL-RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHh-CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 56666666666666532 11122333443333 456677777777777766654
No 317
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.75 E-value=34 Score=29.64 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC
Q 007510 390 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442 (601)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p 442 (601)
+++|...|++..+ ..|+..+|..-+..+. .|-+++.++.+.+..+
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHhhh
Confidence 5667777777776 6899999998887764 4677888887776543
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.56 E-value=5.9 Score=24.27 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 164 TYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 164 ~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555555555555555543
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.30 E-value=0.87 Score=38.21 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=49.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 007510 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (601)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (601)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 44555566666666666776665544455666677777777776666666665511 11223445666666676
Q ss_pred HHHHHHHHHHH
Q 007510 425 VEVGLMLLSQA 435 (601)
Q Consensus 425 ~~~a~~~~~~~ 435 (601)
++++..++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666666543
No 320
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.50 E-value=25 Score=32.73 Aligned_cols=87 Identities=9% Similarity=0.010 Sum_probs=44.1
Q ss_pred HHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh--
Q 007510 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-- 281 (601)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 281 (601)
|.+++..+++.++....-+.-.....++|...- .-|-.|.+.+.+..+.++-..-...--.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIle--LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILE--LCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHH--HHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 566667777776665544433322234444322 2333466777766666655544332112222335555555443
Q ss_pred ---cCCHHHHHHHH
Q 007510 282 ---TGDWEFACSVY 292 (601)
Q Consensus 282 ---~g~~~~a~~~~ 292 (601)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666666655
No 321
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.80 E-value=49 Score=27.63 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007510 377 MNALITALCDGDQLPKTMEVLSDMKSLG-----LCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCI 450 (601)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~g~~p~~~~~~~l 450 (601)
.|+++.-....+.+.-.+.+++.+.... -.-+..+|.+++.+.++..- ---+..+|..+.+.+.+++...|.++
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455555555555555555555543210 01244567777777766655 44567777777777777888888888
Q ss_pred HHHHHh
Q 007510 451 IGMCSR 456 (601)
Q Consensus 451 i~~~~~ 456 (601)
|..+.|
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 877655
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.67 E-value=4.7 Score=23.47 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=9.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHH
Q 007510 379 ALITALCDGDQLPKTMEVLSDM 400 (601)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m 400 (601)
.+...|.+.|++++|...|++.
T Consensus 6 ~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 6 NLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444444444444444443
No 323
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=74.62 E-value=64 Score=28.93 Aligned_cols=66 Identities=12% Similarity=0.088 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 156 (601)
.-+..||.+.--+...|+++.|.+.|+...+....-+-...|.-|..| -.|++..|.+-|...-+.
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 345567777666777777777777777776654222222333333222 456666666655555544
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.45 E-value=1.6 Score=36.55 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007510 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (601)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 151 (601)
+.+.+.+.+......++.+...+...+....+.++..|++.++.+...++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344444455555555555544433444555555555555544444444443
No 325
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.07 E-value=80 Score=32.04 Aligned_cols=105 Identities=15% Similarity=0.055 Sum_probs=53.9
Q ss_pred HHhcCCHHHHHHHHHHHH---hCCC--CC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHh-------CCCCCC-----
Q 007510 349 CSNAKNWQKALELYEHMK---SIKL--KP---TVSTMNALITALCDGDQLPKTMEVLSDMKS-------LGLCPN----- 408 (601)
Q Consensus 349 ~~~~g~~~~A~~~~~~m~---~~~~--~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~----- 408 (601)
+.-.|++.+|.+++-..- +.|. .| .-..||.|...+.+.|.+.-+..+|.+..+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344566666666654432 1111 11 112245555555555555555555554432 344432
Q ss_pred ------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 409 ------TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (601)
Q Consensus 409 ------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (601)
..+|+.-+ .+.+.|++-.|.+.|.+..+. +..++..|-.|-.+|.
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 12344333 566777777777777766543 4456666766666664
No 326
>PRK11619 lytic murein transglycosylase; Provisional
Probab=73.69 E-value=1.4e+02 Score=32.39 Aligned_cols=165 Identities=9% Similarity=-0.008 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007510 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (601)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (601)
..++...++...... .+......-+..-...++++.+...+..|....- -...-.--+..++...|+.++|...|+.
T Consensus 295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555555433222 1223333334444466777777777766644221 1333444455555566777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 007510 330 AKNQGISVGIISYSSLMGACSNAKNWQK-----ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (601)
Q Consensus 330 ~~~~~~~~~~~~~~~li~~~~~~g~~~~-----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (601)
+... . +|..++. -.+.|..-. .-..-..+ ..+ .-..-+..+...|...+|...+..+.+.
T Consensus 372 ~a~~---~---~fYG~LA-a~~Lg~~~~~~~~~~~~~~~~~-----~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~- 436 (644)
T PRK11619 372 LMQQ---R---GFYPMVA-AQRLGEEYPLKIDKAPKPDSAL-----TQG--PEMARVRELMYWNMDNTARSEWANLVAS- 436 (644)
T ss_pred HhcC---C---CcHHHHH-HHHcCCCCCCCCCCCCchhhhh-----ccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 6321 1 1222211 111221100 00000000 000 0112345566778888888888887763
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007510 405 LCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (601)
.+......+.......|..+.++.....
T Consensus 437 --~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 437 --RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred --CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 3444555555556677777777665543
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.63 E-value=38 Score=34.04 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=79.7
Q ss_pred HhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 007510 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (601)
Q Consensus 207 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 286 (601)
-...|++-.|-+-+....... .-.|+.+...+.| ....|.++.+.+.+...... +.....+...++....+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 344566666554333333322 3346655444443 56788888888888766543 2233467778888888889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (601)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 334 (601)
+|..+-..|+...+. ++.............|-++++...++++...+
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999988888877665 55555544445556778888888888876544
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.42 E-value=28 Score=31.11 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=23.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (601)
Q Consensus 134 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 186 (601)
++.+.+.+++++++.+.+.-++.. +.|..+-..+++.||-.|++++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 334444445555555444444332 2334444445555555555555544443
No 329
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.24 E-value=83 Score=29.16 Aligned_cols=181 Identities=13% Similarity=0.140 Sum_probs=102.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCC--CchHHHHHHHHHHHhhhHHHHHHHHHHhhCC---------CCCHHHHHHHHHHHHhc
Q 007510 37 RQGRISECIDLLEDMERKGLL--DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---------NPTLSTFNMLMSVCASS 105 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~ 105 (601)
+...+++|+.-|+++.+...- .|+-...-.++....+.+++++-...|.++. .-+..+.|+++...+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 667999999999998865421 3554455556666666777777777776542 23445677888777766
Q ss_pred CChHHHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC------CCCHHHHHHHH
Q 007510 106 KDSEGAFQVLRLVQEA-GLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI------EPNVHTYGALI 169 (601)
Q Consensus 106 g~~~~A~~~~~~m~~~-g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~------~~~~~~~~~li 169 (601)
.+.+....+++.-.+. .-..+. .|-..|...|...+.+....+++.++.+. |- ..-...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666555555433221 000111 12345666666777777776776666432 10 11124566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-----hccCCHHHHHH
Q 007510 170 DGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITAC-----GQSGAVDRAFD 218 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~-----~~~g~~~~A~~ 218 (601)
.+|....+-..-..+|++.... .--|.+... .+|+-| .+.|++++|-.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 7777777766777777765432 112333332 233333 34466666543
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.14 E-value=30 Score=30.98 Aligned_cols=52 Identities=15% Similarity=0.074 Sum_probs=22.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007510 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221 (601)
Q Consensus 169 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (601)
++.+.+.++..+++...++-++.. +.|..+-..++..++-.|++++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 334444445555554444433331 2233333344445555555555544333
No 331
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.86 E-value=70 Score=28.18 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=41.3
Q ss_pred HHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007510 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-----ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (601)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (601)
..+...+++++|..-++..... +.| ..+. .|.+.....|.+++|...++.....+.. ......-.+.+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~----t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDil 169 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ----TKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDIL 169 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc----chh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHH
Confidence 3455566666666666654432 111 1222 2233444555666666655554443321 11122223445
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 007510 280 SQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 280 ~~~g~~~~a~~~~~~m~~~~ 299 (601)
...|+-++|+.-|.+.++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 55566666666665555543
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.79 E-value=50 Score=34.33 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHH
Q 007510 236 TIGALMKACANAGQVDRAREVYKM 259 (601)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~ 259 (601)
-|..|.++....+++..|.+.|.+
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHh
Confidence 344444444444444444444443
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.51 E-value=9.4 Score=24.26 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=14.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHC
Q 007510 415 LLVACERKDDVEVGLMLLSQAKED 438 (601)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~ 438 (601)
+..+|...|+.+.|+++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666643
No 334
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.53 E-value=52 Score=25.69 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=42.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (601)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (601)
...++|..+.+.+...+. -...+--.-+..+.+.|++++|+ ..-. ....||...|-+|-. .+.|-.+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l~~~--~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--LLPQ--CHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--HHHT--TS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--Hhcc--cCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 356677777777776552 22223333344556777777772 1111 112566666666543 4667777777777
Q ss_pred HHHHhCC
Q 007510 186 GIMRSKN 192 (601)
Q Consensus 186 ~~m~~~g 192 (601)
.++-.+|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 7676655
No 335
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.46 E-value=66 Score=26.87 Aligned_cols=83 Identities=13% Similarity=0.181 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007510 342 YSSLMGACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALITALCDGDQ-LPKTMEVLSDMKSLGLCPNTITYSIL 415 (601)
Q Consensus 342 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 415 (601)
.|.++.-....++..-...+++.+.... -..+..+|.+++.+..+... ---+..+|.-|.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566666666666666666666653211 02345578888888866665 33467778888887788888889999
Q ss_pred HHHHhhcCC
Q 007510 416 LVACERKDD 424 (601)
Q Consensus 416 l~a~~~~g~ 424 (601)
+.+|.+--.
T Consensus 122 i~~~l~g~~ 130 (145)
T PF13762_consen 122 IKAALRGYF 130 (145)
T ss_pred HHHHHcCCC
Confidence 988876533
No 336
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.13 E-value=47 Score=26.79 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (601)
Q Consensus 392 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (601)
+..+-++.+...++.|++.....-++||.+.+|+..|.++|+-++.. ..+...+|..+++-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 44555666777789999999999999999999999999999887643 33444467777654
No 337
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.69 E-value=8.1 Score=21.06 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=7.7
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 007510 345 LMGACSNAKNWQKALELY 362 (601)
Q Consensus 345 li~~~~~~g~~~~A~~~~ 362 (601)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 333444444444444443
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.28 E-value=8.4 Score=22.01 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=7.5
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 007510 172 CAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 172 ~~~~g~~~~A~~~~~~m~ 189 (601)
+.+.|++++|.+.|+++.
T Consensus 10 ~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 333444444444444433
No 339
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.45 E-value=31 Score=28.10 Aligned_cols=58 Identities=9% Similarity=0.148 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHh
Q 007510 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85 (601)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 85 (601)
...+..|-.+++.-+ ++.++|..|...++-...+.++...+..+-..|++++|.++|.
T Consensus 66 ~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 66 ERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555554322 6666666666666544455555555555555555666655554
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=67.44 E-value=36 Score=32.57 Aligned_cols=84 Identities=11% Similarity=-0.058 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 007510 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (601)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 148 (601)
.++|.+++|+..|.... +.|++++..-..+|.+..++..|..=-...+..+ ..-...|..-+.+-...|...+|.+
T Consensus 108 FKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34456666666665432 2255555555556666655555554444433221 1112345555555555566666666
Q ss_pred HHHHHHHC
Q 007510 149 VFHEMVNA 156 (601)
Q Consensus 149 ~~~~m~~~ 156 (601)
-++..+..
T Consensus 187 D~E~vL~L 194 (536)
T KOG4648|consen 187 DCETVLAL 194 (536)
T ss_pred hHHHHHhh
Confidence 66666654
No 341
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.47 E-value=1e+02 Score=28.05 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=53.6
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHH---HHH-HHhh--cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 007510 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSI---LLV-ACER--KDDVEVGLMLLSQAKEDGV-IPNLVMFKCIIGMCSR 456 (601)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~-a~~~--~g~~~~a~~~~~~~~~~g~-~p~~~~~~~li~~~~~ 456 (601)
-...+++.+|+.+|++.....+..+..-|+. ++. ++|+ ..+.-.+...+++-.+... -.|..-++-|-+++.-
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~a 243 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDA 243 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHH
Confidence 3467889999999999877655444333332 221 2233 2455556666666655321 1234445555444432
Q ss_pred -hHHHHHHhhhhhhhccCCCccchhhHHH
Q 007510 457 -RYEKARTLNEHVLSFNSGRPQIENKWTS 484 (601)
Q Consensus 457 -~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 484 (601)
.-.....+-+.+..|++.++.+ .|.+
T Consensus 244 ieE~d~e~fte~vkefDsisrLD--~W~t 270 (288)
T KOG1586|consen 244 IEEQDIEKFTEVVKEFDSISRLD--QWKT 270 (288)
T ss_pred HhhhhHHHHHHHHHhhhccchHH--HHHH
Confidence 2223445566777787776543 4543
No 342
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=1.2e+02 Score=28.52 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHH----HHhCCCCCCHHH
Q 007510 378 NALITALCDGDQLPKTMEVLSD----MKSLGLCPNTIT 411 (601)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t 411 (601)
.-+|..+.+.|.+.+|+.+... +.+.+-+|+..+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 4578888999999999876544 444444555443
No 343
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=65.97 E-value=60 Score=25.12 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=19.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (601)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (601)
.+-+..+....+.|++....+.+.+|.+.+++..|..+++-++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444445555555555555555555555555555443
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=65.39 E-value=20 Score=20.68 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555666666666666655443
No 345
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.39 E-value=8.2 Score=31.33 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=21.9
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007510 386 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (601)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 419 (601)
..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345666777888888888877775 66666544
No 346
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=64.39 E-value=1.5e+02 Score=29.07 Aligned_cols=63 Identities=14% Similarity=0.160 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
.+|..+...+.+.|+++.|...+..+...+..+ ++.....-....-..|+..+|+..++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555554432110 111222222333344555555555555444
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.99 E-value=1.4e+02 Score=28.26 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
+......|..+|.+.+|.++.+.....+ +.+...+-.|+..++..|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4455566777777777777777777665 5666677777777777777666666666554
No 348
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.63 E-value=60 Score=24.25 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHHHH
Q 007510 318 GKVEAAFEILQEAK 331 (601)
Q Consensus 318 g~~~~a~~~~~~~~ 331 (601)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 349
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=62.57 E-value=40 Score=22.49 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=21.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (601)
Q Consensus 415 ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (601)
+.-++.+.|++++|++..+.+++ ++|+..-...|-.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 33456667777777777776666 55665555544443
No 350
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=62.07 E-value=47 Score=31.86 Aligned_cols=50 Identities=8% Similarity=-0.124 Sum_probs=24.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHE 152 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (601)
|.++|.+++|++.|..-.... +.+.+++..-..+|.+..++..|..--..
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 445555555555555444321 22455555555555555555544443333
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=61.89 E-value=18 Score=22.95 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=8.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 007510 170 DGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~ 189 (601)
.+|...|+.+.|..++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444443
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.48 E-value=1.2e+02 Score=26.96 Aligned_cols=91 Identities=21% Similarity=0.219 Sum_probs=50.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCC
Q 007510 315 GHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQ 389 (601)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 389 (601)
...|++++|..-|...+..-.... ...|..-..++.+.+.++.|+.--...++.+ |+ .....--..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhh
Confidence 344555555555555554321111 2233334445667777777777666666543 32 2222223446777778
Q ss_pred hhHHHHHHHHHHhCCCCCCH
Q 007510 390 LPKTMEVLSDMKSLGLCPNT 409 (601)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~ 409 (601)
+++|+.=++++.+. .|..
T Consensus 184 ~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 184 YEEALEDYKKILES--DPSR 201 (271)
T ss_pred HHHHHHHHHHHHHh--Ccch
Confidence 88888888888773 4543
No 353
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.96 E-value=1.5e+02 Score=28.03 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007510 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSV 291 (601)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~ 291 (601)
.++..+...++..+++.+++..-.++++..... +...|...|..+|....+.|+..-..++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 344445555555566666666555555544433 3333445555555555555555444333
No 354
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.11 E-value=81 Score=24.66 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=45.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007510 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (601)
Q Consensus 38 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 117 (601)
..+.+||-.+.+.+...+. ....+..+-+...-+.|++++|+..=...+.||...|.++-. .+.|-.+++...+.+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 4577888888888887763 233333233333445677888854444455677777776643 456666666666666
Q ss_pred HHHcC
Q 007510 118 VQEAG 122 (601)
Q Consensus 118 m~~~g 122 (601)
+-..|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 65544
No 355
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=60.05 E-value=1.6e+02 Score=28.01 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=38.9
Q ss_pred HHHHhcCCHHHHHHHHHH-HHHCCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 277 NCCSQTGDWEFACSVYDD-MTKKGVIPDE----VFLSALIDFAGHAGKVE-AAFEILQEAKNQGISVGIISYSSLMGACS 350 (601)
Q Consensus 277 ~~~~~~g~~~~a~~~~~~-m~~~~~~p~~----~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 350 (601)
+-..+...+++.....++ |.+.++ |+. ..|+.++++-.-+.+-+ -|.+.++. ...|.-|+.+++
T Consensus 263 ~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~ 332 (412)
T KOG2297|consen 263 EQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFC 332 (412)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHh
Confidence 333444455555555544 555444 454 35777776543332211 12222222 456778888888
Q ss_pred hcCCHHHHH
Q 007510 351 NAKNWQKAL 359 (601)
Q Consensus 351 ~~g~~~~A~ 359 (601)
..|+.+..+
T Consensus 333 s~g~sEL~L 341 (412)
T KOG2297|consen 333 SQGQSELEL 341 (412)
T ss_pred cCChHHHHH
Confidence 888876553
No 356
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=60.00 E-value=1.7e+02 Score=28.42 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHH
Q 007510 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ---SGAVDRAFDVL 220 (601)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~ 220 (601)
+.-+.++++.++.. +.+...+..+|..+.+..+.+...+.++++.... +-+...|...|..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666655553 3456666667777777777777777777776652 2245566655544332 12344444444
Q ss_pred HH
Q 007510 221 AE 222 (601)
Q Consensus 221 ~~ 222 (601)
.+
T Consensus 126 ~~ 127 (321)
T PF08424_consen 126 EK 127 (321)
T ss_pred HH
Confidence 43
No 357
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.59 E-value=1.3e+02 Score=26.75 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=48.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKAD-----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 176 (601)
+..+|++++|..-|...+..- ++. ...|..-..++.+.+.++.|+.--.+.++.+ +....+...-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 556677777777777666542 221 2233333445556666666666666665543 112222223334566666
Q ss_pred CHHHHHHHHHHHHhC
Q 007510 177 QVAKAFGAYGIMRSK 191 (601)
Q Consensus 177 ~~~~A~~~~~~m~~~ 191 (601)
.++.|+.-|.++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 677777666666655
No 358
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.58 E-value=1.2e+02 Score=28.47 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007510 310 LIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
-|-.|.+.+.+..+.++-..-.+
T Consensus 124 CILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHh
Confidence 33344455555444444444433
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.31 E-value=2.1e+02 Score=28.89 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=4.7
Q ss_pred HhcCCHHHHHH
Q 007510 173 AKAGQVAKAFG 183 (601)
Q Consensus 173 ~~~g~~~~A~~ 183 (601)
+..|+.+.+..
T Consensus 76 ~~~g~~~~v~~ 86 (413)
T PHA02875 76 VEEGDVKAVEE 86 (413)
T ss_pred HHCCCHHHHHH
Confidence 34454444333
No 360
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.88 E-value=1.3e+02 Score=30.57 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=68.4
Q ss_pred HHhcCCHHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC-----
Q 007510 314 AGHAGKVEAAFEILQEAK---NQGISVG-----IISYSSLMGACSNAKNWQKALELYEHMKS-------IKLKPT----- 373 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~---~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~----- 373 (601)
+.-.|++.+|.+++...- ..|...+ -..+|.+...+.+.|.+..+..+|....+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 344577777777665431 1221111 12235555555666666666666665542 343332
Q ss_pred ------HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh---cCCHHHHHHH
Q 007510 374 ------VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLML 431 (601)
Q Consensus 374 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~ 431 (601)
..+||. .-.|...|++-.|.+.|.+.... +..++..|..+..+|.. .|..++....
T Consensus 330 s~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima~~~~l~ee~~~s 394 (696)
T KOG2471|consen 330 SQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMALQKGLLEEGNSS 394 (696)
T ss_pred hcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhhhhhhhhccCC
Confidence 233442 33567889999999999988764 56788899999988854 3344444433
No 361
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=57.85 E-value=2.8e+02 Score=30.04 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 007510 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (601)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 212 (601)
++|--+.++|++++|.++..+.... .......+...+..|....+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~ 160 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPD 160 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTS
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCC
Confidence 4666778999999999988665543 35556677778888877543
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=56.14 E-value=1.5e+02 Score=26.41 Aligned_cols=73 Identities=8% Similarity=0.002 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCCHHHHH
Q 007510 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNALITACGQSGAVDRAF 217 (601)
Q Consensus 144 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~ 217 (601)
+.|.+.|-.+...+.--++.....|...|. ..+.+++++++-+..+. +-.+|+..+.+|.+.+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566666766666654445555555555555 46667777777666542 23566777777777777777776653
No 363
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.61 E-value=65 Score=24.33 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 007510 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~ 55 (601)
..|.|+.........++..|++++|++.|-++.+.+
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 356777777777777778888888888887777665
No 364
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=54.56 E-value=2.6e+02 Score=28.82 Aligned_cols=182 Identities=12% Similarity=0.096 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (601)
Q Consensus 90 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 169 (601)
-|....-+++..+.++...+-...+-.+|...| .+-..|..++..|... ..+.-..+|+++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355567788888999888888889999998865 4567788899999888 567778899988887533 455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 007510 170 DGCAKAGQVAKAFGAYGIMRSKNVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (601)
Q Consensus 170 ~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (601)
.-|-+ ++.+.+...|.+...+=++. =...|.-+...- ..+.+....+...+... .|...-.+.+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHh
Confidence 66655 88888888888876542211 123455554322 34566666666666543 34444556666666778
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007510 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (601)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 280 (601)
....++++|.+++..+.+.+ ..|..+...++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 88899999999999888776 444455555554443
No 365
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=54.33 E-value=2.5e+02 Score=28.56 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=88.8
Q ss_pred CCCCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhC---CCCCHHH
Q 007510 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLST 94 (601)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~ 94 (601)
|+..| .......++..-...|++..|.+-+....+.. |................|+++.+...+... ......+
T Consensus 283 q~~~~-~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~ 359 (831)
T PRK15180 283 QEKQD-QIREITLSITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST 359 (831)
T ss_pred CcCCc-chhHHHHHHHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH
Confidence 33434 34455556666667899988877666666543 222222223344456678899988887543 3455667
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (601)
...+++..-+.|+++.|..+.+-|....++ +........-..-..|-++++.-.|+++....
T Consensus 360 ~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 360 LRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 788888889999999999999999876654 33333333333445677888888888876543
No 366
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.58 E-value=1.8e+02 Score=26.61 Aligned_cols=30 Identities=27% Similarity=0.557 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 195 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
|.+.....++..|. .+++++|.+++.++-.
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~ 266 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWK 266 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence 44444444443332 2344455555544443
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.41 E-value=46 Score=24.35 Aligned_cols=46 Identities=7% Similarity=-0.078 Sum_probs=26.7
Q ss_pred cCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHH
Q 007510 386 DGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLML 431 (601)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 431 (601)
...+.++|+..|+...+.-..|. -.++..++.+++..|++++.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777655422222 13455666677777776665544
No 368
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.03 E-value=2e+02 Score=26.98 Aligned_cols=25 Identities=24% Similarity=0.119 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHH
Q 007510 126 DCKLYTTLITTCAKSGKVDAMFEVF 150 (601)
Q Consensus 126 ~~~~~~~li~~~~~~g~~~~a~~~~ 150 (601)
|+.....+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5667777778888888887777655
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=52.35 E-value=25 Score=18.97 Aligned_cols=19 Identities=11% Similarity=0.022 Sum_probs=7.5
Q ss_pred HHHHHcCCChhHHHHHHHH
Q 007510 381 ITALCDGDQLPKTMEVLSD 399 (601)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~ 399 (601)
...+...|++++|...|++
T Consensus 8 a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 3333333444444444433
No 370
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.84 E-value=2.4e+02 Score=27.49 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=27.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (601)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 348 (601)
-+.++++.++.+. -+...+...+..+.+..+.+...+-++.+.... +-+...|...++.
T Consensus 50 klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 50 KLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 3444444444432 234444445555555555555555555555442 2234444444433
No 371
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.54 E-value=53 Score=21.28 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=16.6
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007510 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (601)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li 451 (601)
.+.|-..++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555555554443
No 372
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.51 E-value=20 Score=29.14 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=22.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (601)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 171 (601)
..|.-.+|-.+|.+|++.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 446667788888888888877764 7777654
No 373
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.17 E-value=84 Score=23.53 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHH
Q 007510 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (601)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 110 (601)
.|+.+.|.+++..++ ..+..|..++.++-..|.-.-
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 345555555555555 444555555555555554433
No 374
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=49.45 E-value=4.1e+02 Score=29.55 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=47.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHH-HHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 007510 138 AKSGKVDAMFEVFHEMVNAGIEPNV-------HTYGALIDG-CAKAGQVAKAFGAYGIMRSK----NVKPDRVVFNALIT 205 (601)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~ 205 (601)
....++++|..+..++...-..|+. ..|+.|-.. ....|+++.|.++-+..... -..+..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3456777777777766543212221 123333222 22356777777766655432 12334455555666
Q ss_pred HHhccCCHHHHHHHHHHhh
Q 007510 206 ACGQSGAVDRAFDVLAEMN 224 (601)
Q Consensus 206 ~~~~~g~~~~A~~~~~~~~ 224 (601)
+..-.|++++|..+..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 506 AAHIRGELTQALALMQQAE 524 (894)
T ss_pred HHHHhchHHHHHHHHHHHH
Confidence 6666777777777665544
No 375
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=48.46 E-value=57 Score=21.73 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=18.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007510 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 414 (601)
+.-++.+.|++++|.+..+.+++ +.|+..-...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHH
Confidence 44455666666666666666665 4565544333
No 376
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.21 E-value=1.3e+02 Score=23.55 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhc--CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007510 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERK--DDVEVGLMLLSQAKEDGVIPNLVMFKC 449 (601)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~g~~p~~~~~~~ 449 (601)
..++..|...|+.++|..-+.++.- +.- ......++..+... ..-+....++..+.+.+..+....-.+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~---~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~g 77 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKL---PSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEG 77 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT----GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC---CccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4456677777888888887777532 211 12223333333333 223345566666666655544433333
No 377
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.14 E-value=68 Score=20.79 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=22.6
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007510 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (601)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 417 (601)
.+.|-..++..++++|.+.|+.-+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666677777777777777777776666554
No 378
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.51 E-value=3.2e+02 Score=27.68 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007510 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (601)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~~ 456 (601)
...|+.-|...|...+|...++++--- +.--...+.+++.+..+.|+-...+.+++..-+.|+- |-+.+-..|.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhh
Confidence 456788889999999999888775310 1123567889999999999988788888877776543 45556555554
No 379
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=47.47 E-value=1.3e+02 Score=23.62 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (601)
Q Consensus 271 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 297 (601)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388888888888888888888888766
No 380
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=46.11 E-value=3.5e+02 Score=27.85 Aligned_cols=242 Identities=10% Similarity=0.110 Sum_probs=118.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcc------CCHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCChhHH
Q 007510 181 AFGAYGIMRSKNVKPDRVVFNALITACGQS------GAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRA 253 (601)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a 253 (601)
...+|++.... -|+...|+..|..|... ..+...+.+++..... .+..++ ...|..+...++.....
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~-~~l~~~~~~~ys~~~l~~~t~~~~--- 374 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHEL-KLLSECLYKQYSVLLLCLNTLNEA--- 374 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHhccchH---
Confidence 34566665543 44556666666655432 1344455555555443 233333 33455555555544432
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHH--HHHHH
Q 007510 254 REVYKMIHKYNIKGTPEVYTIAINCCSQT-GDWEF-ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAA--FEILQ 328 (601)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~-a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a--~~~~~ 328 (601)
...-..+...++..+...|..-+....+. .+++- -.++|......-..+-...|++.. .|+ +... ..++.
T Consensus 375 r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 375 REVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred hHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 22222222223344445555544444422 12221 112223333322222223333333 122 1111 12223
Q ss_pred HHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCChhHHHHHHHHHHh-CC
Q 007510 329 EAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC--DGDQLPKTMEVLSDMKS-LG 404 (601)
Q Consensus 329 ~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~-~g 404 (601)
.....+ .++.. .-+.+++-+.+.|-..+|+.++..+.... +|+...|..+|..-. ..-+..-+..+++.|.. -|
T Consensus 450 a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 450 ALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 333333 33433 34567777788888888888888887653 566777776665322 11226666777777654 34
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
.|+..|.-.+.-=...|..+.+-.++.++.+
T Consensus 528 --~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 --ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred --CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 5666666666555566666666666655543
No 381
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=45.28 E-value=4.8e+02 Score=29.10 Aligned_cols=227 Identities=13% Similarity=0.078 Sum_probs=116.0
Q ss_pred hccCCHHHHHHHHHHhhhCCC--CCCCC---HHHHHHHHH-HHHhcCChhHHHHHHHHHHhc----CCCCCHHHHHHHHH
Q 007510 208 GQSGAVDRAFDVLAEMNAEVH--PVDPD---HITIGALMK-ACANAGQVDRAREVYKMIHKY----NIKGTPEVYTIAIN 277 (601)
Q Consensus 208 ~~~g~~~~A~~~~~~~~~~~~--~~~~~---~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~ 277 (601)
....++++|..++.++...-. +..+. ...++.+-. .....|+++.+.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 456788888888887654210 01111 112333221 123467788888777666543 22334556777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHH--HHHhcCCHH--HHHHHHHHHHHC-----CC-CCCHHHHHH
Q 007510 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLS---ALID--FAGHAGKVE--AAFEILQEAKNQ-----GI-SVGIISYSS 344 (601)
Q Consensus 278 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~---~li~--~~~~~g~~~--~a~~~~~~~~~~-----~~-~~~~~~~~~ 344 (601)
+..-.|++++|..+..+..+..-.-+...+. .+.. .+...|... +....+...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999988887665432222333332 2222 344556322 333333333222 10 122334455
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCCChhHHHHHHHHHHhCCCCC----CHHHHHHHHH
Q 007510 345 LMGACSNA-KNWQKALELYEHMKSIKLKPTVST--MNALITALCDGDQLPKTMEVLSDMKSLGLCP----NTITYSILLV 417 (601)
Q Consensus 345 li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~ 417 (601)
+..++.+. +...++..-++--......|-... +..|+..+...|+.++|...+.++......+ +-.+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555552 112222222222222211222222 2356778888999999999888876533222 3222222222
Q ss_pred --HHhhcCCHHHHHHHHHH
Q 007510 418 --ACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 418 --a~~~~g~~~~a~~~~~~ 434 (601)
.....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 33557888887777655
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=44.95 E-value=86 Score=22.97 Aligned_cols=45 Identities=16% Similarity=0.091 Sum_probs=18.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 007510 281 QTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFE 325 (601)
Q Consensus 281 ~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~ 325 (601)
...+.++|+..|...++.-..|.. .++..++.+++..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555444443222111 234444445555555444443
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.95 E-value=59 Score=22.47 Aligned_cols=21 Identities=19% Similarity=0.157 Sum_probs=8.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 007510 168 LIDGCAKAGQVAKAFGAYGIM 188 (601)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m 188 (601)
+|.+|...|++++|.+...++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444433
No 384
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.76 E-value=3e+02 Score=27.69 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH--CC----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 129 LYTTLITTCAKSGKVDAMFEVFHEMVN--AG----I-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 129 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~g----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
+...|++.++-.||+..|+++++.+.- .+ + .-.+.++-.+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666554421 11 1 2244566667777777777777777777664
No 385
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=44.30 E-value=79 Score=25.67 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLR 116 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~ 116 (601)
.|......+-..|++.+|.++|+
T Consensus 101 fYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 101 FYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444455555666666666654
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.23 E-value=1.8e+02 Score=23.63 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=27.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 288 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
..+-+..+...++.|++......+++|.+.+++..|..+|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444555556666666666666666666666666666665544
No 387
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=43.16 E-value=2.1e+02 Score=30.64 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007510 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 347 (601)
+.|+..+|.+.+-.+.+.+..|...-...|.+
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34777788777777777766665544444443
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.61 E-value=1.3e+02 Score=26.63 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 405 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
..|+..+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777777777778888888888777777765
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=42.01 E-value=2.1e+02 Score=29.93 Aligned_cols=132 Identities=20% Similarity=0.160 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (601)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (601)
+-+-.+|..|.... .|-..+.|.-.-.+.-.|+...|.+.+.........-..+....+.....+.|-.-.|-.++.+.
T Consensus 590 e~~~~~~~~~~~~~-~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINKPN-APIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcCCC-CCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 34445555554432 33323333333334456777777777766544322222233444555555666666777777766
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007510 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (601)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 385 (601)
.... ...+-++..+.++|.-..+++.|++.|++..+.. +.+.+.-+.|...-|
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 6554 3445667777888888888888888888777653 334555555544333
No 390
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.48 E-value=74 Score=28.16 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (601)
Q Consensus 159 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 190 (601)
.|++.+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666655555554
No 391
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.09 E-value=2.9e+02 Score=25.37 Aligned_cols=76 Identities=12% Similarity=0.220 Sum_probs=35.2
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-----------CCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 007510 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-K-----------LKPTVSTMNALITALCDGDQLPKTMEVLS 398 (601)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (601)
...+++.+..-..+++ +...|+..+|..-++.-... | -.|.+.....++..+. .+++++|.+++.
T Consensus 186 k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~ 262 (333)
T KOG0991|consen 186 KAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILA 262 (333)
T ss_pred HHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHH
Confidence 3334433333333333 44566666666555543310 0 1344444444444433 344555555555
Q ss_pred HHHhCCCCCCH
Q 007510 399 DMKSLGLCPNT 409 (601)
Q Consensus 399 ~m~~~g~~p~~ 409 (601)
++-+.|+.|..
T Consensus 263 ~lw~lgysp~D 273 (333)
T KOG0991|consen 263 ELWKLGYSPED 273 (333)
T ss_pred HHHHcCCCHHH
Confidence 55555555443
No 392
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.80 E-value=64 Score=22.30 Aligned_cols=23 Identities=4% Similarity=-0.022 Sum_probs=10.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHH
Q 007510 414 ILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 414 ~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555444443
No 393
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.46 E-value=6e+02 Score=28.64 Aligned_cols=302 Identities=11% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHH---HhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC--
Q 007510 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV---CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK-- 106 (601)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 106 (601)
...|.+..++++|+.+-+.....+.......-+..+... ...++++++|.+.|.++...-..+....-..+=...
T Consensus 314 i~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~~~vi~lfP~l~p~~~~~ 393 (877)
T KOG2063|consen 314 IQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDPRHVISLFPDLLPSENSS 393 (877)
T ss_pred HHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccChHHHHHhchhhcCCcccc
Q ss_pred -ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007510 107 -DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (601)
Q Consensus 107 -~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 185 (601)
++..... ..+......-.+.+.-.++.-+....+...+.-=...|... ...-+.++........-+-+..+=
T Consensus 394 ~~~~~~vp--~~~~~~~~~~~v~a~l~~~~ylt~~r~~~~~~l~~~~m~~~-----~~~~~~~~s~~~~~~~~~~~~~ID 466 (877)
T KOG2063|consen 394 IEFTGVVP--IRAPELRGGDLVPAVLALIVYLTQSRREENKKLNKYKMLYM-----NYFKNTLISELLKSDLNDILELID 466 (877)
T ss_pred cceeeecc--CchhhhccCcccchhhhhhhHhHHHHHHHHHHHHHhhhhHH-----hhhhccCcchhhccchHHHHHHHH
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh---
Q 007510 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK--- 262 (601)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 262 (601)
..+..--..-|...-..+++.=...-.+++...++..-. -|..|+..|...|+.++|.+++....+
T Consensus 467 ttLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~-----------~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~ 535 (877)
T KOG2063|consen 467 TTLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSK-----------KYRELIELYATKGMHEKALQLLRDLVDEDS 535 (877)
T ss_pred HHHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhcc-----------cHHHHHHHHHhccchHHHHHHHHHHhcccc
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHH------------HHHHHHhcCCHHHHHHHHH
Q 007510 263 YNIKGTPEVYTIAINCCSQTGDW--EFACSVYDDMTKKGVIPDEVFLSA------------LIDFAGHAGKVEAAFEILQ 328 (601)
Q Consensus 263 ~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~------------li~~~~~~g~~~~a~~~~~ 328 (601)
..-..-...+-.++..+.+.+.. +-.++.-+.............++. .+-.|......+.+..+++
T Consensus 536 ~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE 615 (877)
T KOG2063|consen 536 DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLE 615 (877)
T ss_pred ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHH
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh
Q 007510 329 EAKNQGISVGIISYSSLMGACSN 351 (601)
Q Consensus 329 ~~~~~~~~~~~~~~~~li~~~~~ 351 (601)
.+....-..+....+.++..|..
T Consensus 616 ~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 616 HLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhHhccccchHHHHHHHHHHHH
No 394
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.32 E-value=2.5e+02 Score=30.00 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCHH------HHHHHHHHhhhCCCCCCCCHHHHH
Q 007510 167 ALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITACGQSGAVD------RAFDVLAEMNAEVHPVDPDHITIG 238 (601)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~~ 238 (601)
+|+.+|..+|++..+.++++.+... |-+.=...+|..|+...+.|.++ .|.+++++.. +.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~-----ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR-----LNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh-----cCCcchHHH
Confidence 8899999999999999999988754 33334567888888888888754 4444554433 566778887
Q ss_pred HHHHHHHh
Q 007510 239 ALMKACAN 246 (601)
Q Consensus 239 ~ll~~~~~ 246 (601)
.++.+-..
T Consensus 108 ll~~~sln 115 (1117)
T COG5108 108 LLCQASLN 115 (1117)
T ss_pred HHHHhhcC
Confidence 77765544
No 395
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=38.67 E-value=5e+02 Score=27.42 Aligned_cols=367 Identities=10% Similarity=0.025 Sum_probs=205.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHhhhHHHHHHHHHHhhCCC------CCHHHHHHHHHHHHhcCChH
Q 007510 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN------PTLSTFNMLMSVCASSKDSE 109 (601)
Q Consensus 37 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~ 109 (601)
+-|..+.+..+|++-...- |....+...... .+...|+.+.-+++|+.+.. -....|-..|..-..++++.
T Consensus 91 klg~~~~s~~Vfergv~ai--p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAI--PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 6789999999999888643 444444433333 34455667777777776431 34557888888888889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---c------CChhHHHHHHHHHHHC---C-CCCCHHHHHHHHHHHH-hc
Q 007510 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAK---S------GKVDAMFEVFHEMVNA---G-IEPNVHTYGALIDGCA-KA 175 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---~------g~~~~a~~~~~~m~~~---g-~~~~~~~~~~li~~~~-~~ 175 (601)
....++++.++. | ...|+..-.-|.+ . ...+++.++-...... + ..+....+..-+.--. ..
T Consensus 169 ~v~~iyeRilei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s 244 (577)
T KOG1258|consen 169 RVANIYERILEI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPS 244 (577)
T ss_pred HHHHHHHHHHhh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCcc
Confidence 999999999863 2 2223333222221 1 1222222222222110 0 0011111111111100 01
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCC-CCC----CCCHHHHHHHHHHHHhcCCh
Q 007510 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-HPV----DPDHITIGALMKACANAGQV 250 (601)
Q Consensus 176 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~----~~~~~~~~~ll~~~~~~g~~ 250 (601)
+..+++.....+.. ..--..+-......+....|+.-.... ..+ .++..+|...+.--.+.|+.
T Consensus 245 ~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~ 313 (577)
T KOG1258|consen 245 KSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDF 313 (577)
T ss_pred chhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccH
Confidence 11112221111111 111122333333444444455443321 011 23466788888888899999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007510 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (601)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 330 (601)
+...-+|+++.-.- ..-...|--.+.-.-..|+.+-|..++....+-.++-.+.+--.-....-..|++..|..+++.+
T Consensus 314 ~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 314 SRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 99999998876532 22345666666666667999988888876665544333333222222344578999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH-----HHcCCChhHHHHHHHHHHh
Q 007510 331 KNQGISVGIISYSSLMGACSNAKNWQKAL---ELYEHMKSIKLKPTVSTMNALITA-----LCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 331 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~ 402 (601)
...- +.-..+-..-+....+.|+.+.+. .++....+... +......+.-- +.-.++.+.|..++.++.+
T Consensus 393 ~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~ 469 (577)
T KOG1258|consen 393 ESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEAND 469 (577)
T ss_pred HhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 8764 322333334455667888888888 55555443322 22222222222 2336788999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCH
Q 007510 403 LGLCPNTITYSILLVACERKDDV 425 (601)
Q Consensus 403 ~g~~p~~~t~~~ll~a~~~~g~~ 425 (601)
. ++++...|..++.-+...+..
T Consensus 470 ~-~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 470 I-LPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred c-CCccHHHHHHHHHHHHhCCcc
Confidence 5 566778888888887776643
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.53 E-value=56 Score=30.95 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007510 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413 (601)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 413 (601)
|+..|..-.+.|++++|+.++++..+.|+.--..||.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4455666666666666666666666665543344443
No 397
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=38.10 E-value=3.8e+02 Score=25.89 Aligned_cols=56 Identities=20% Similarity=0.139 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhh
Q 007510 167 ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMN 224 (601)
Q Consensus 167 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~~ 224 (601)
.|.-+-.+.|+..+|.+.|+++.+. .|=...+ ..||.++....-+.+...++.+..
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444567777777777766544 2222222 246666666655555555554443
No 398
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.05 E-value=1.7e+02 Score=24.56 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=29.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 007510 151 HEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (601)
Q Consensus 151 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 211 (601)
..+.+.|+.++.. -..++..+...++.-.|.++|+++.+.+..-+..|....++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344455443332 33455555555555666666666666554444444444444444444
No 399
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=37.86 E-value=2.3e+02 Score=23.77 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=39.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007510 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (601)
Q Consensus 114 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 177 (601)
+...+.+.|++++.. -..++..+.+.++.-.|.++|+.+.+.+...+..|-..-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 445566677666544 334666777777778888888888887655555554444455555543
No 400
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=37.22 E-value=5.7e+02 Score=27.65 Aligned_cols=158 Identities=13% Similarity=0.129 Sum_probs=87.4
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHcCCCC---ch-HHHHHHHHHHHhhhHHHHHHHHHHhhCC----CCCHHHH----HH
Q 007510 31 SYNRLI-RQGRISECIDLLEDMERKGLLD---MD-KVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTF----NM 97 (601)
Q Consensus 31 ~~~~l~-~~g~~~~A~~~~~~m~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~----~~ 97 (601)
..+.|+ ...++++|...+++.......+ +- -.....+++++.+.+... |.+..++.. ......| ..
T Consensus 65 la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frl 143 (608)
T PF10345_consen 65 LASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRL 143 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHH
Confidence 334445 5789999999998765332111 11 112233445555444333 776666532 1111122 22
Q ss_pred H-HHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCC---------CCCCH
Q 007510 98 L-MSVCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCA--KSGKVDAMFEVFHEMVNAG---------IEPNV 162 (601)
Q Consensus 98 l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g---------~~~~~ 162 (601)
+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. +.+..+++.+..+.+.... -.|-.
T Consensus 144 l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL 223 (608)
T PF10345_consen 144 LKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQL 223 (608)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence 2 223333479999999998876532 2444555555555544 4455677777777764321 13456
Q ss_pred HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 007510 163 HTYGALIDGCA--KAGQVAKAFGAYGIMR 189 (601)
Q Consensus 163 ~~~~~li~~~~--~~g~~~~A~~~~~~m~ 189 (601)
.+|..+++.++ ..|+++.+...++++.
T Consensus 224 ~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 224 KALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67777777654 5677767766655553
No 401
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.10 E-value=9.8e+02 Score=30.36 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=87.2
Q ss_pred HHHHHhhhHHHHHHHHHHhhCC----CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007510 67 FFNVCKSQKAIKEAFRFFKLVP----NPT--LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (601)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 140 (601)
++.+..+++.+..|+..+++-. +.+ ...+-.+...|..-++++...-+...-.. .|+ .+ .-|......
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHHHhh
Confidence 3445566788888888888721 111 22344444478888888887777654111 222 22 334456678
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHhccCCHHHHHHH
Q 007510 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL-ITACGQSGAVDRAFDV 219 (601)
Q Consensus 141 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~ 219 (601)
|++..|..-|+.+.+.+ ++....++-++......|.++.+.-..+-.... ..+....|+.+ +.+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 89999999999988774 334666776666666677777776655554433 13333334332 2333556666666555
Q ss_pred HH
Q 007510 220 LA 221 (601)
Q Consensus 220 ~~ 221 (601)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 44
No 402
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.23 E-value=2.3e+02 Score=24.78 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=20.0
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007510 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (601)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 418 (601)
+..|.+.|.+++|.+++++... .|+......-+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~ 152 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLM 152 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHH
Confidence 3456677777777777777654 3444444433333
No 403
>PRK10941 hypothetical protein; Provisional
Probab=36.22 E-value=3.8e+02 Score=25.32 Aligned_cols=56 Identities=14% Similarity=-0.012 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 007510 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (601)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 224 (601)
+-.+|.+.++++.|+++.+.+.... +.|..-+.--.-.|.+.|.+..|..=++...
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3334445555555555555554432 2233333333334445555555554444443
No 404
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.81 E-value=1e+03 Score=30.21 Aligned_cols=313 Identities=12% Similarity=0.056 Sum_probs=156.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007510 97 MLMSVCASSKDSEGAFQVLRLV----QEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (601)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 172 (601)
++..+-.+.+.+..|+..++.- .+. .-....|..+...|+..+++|...-+...... .|+ .+ .-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HH-HHHHHH
Confidence 3444556677788888888773 211 11223344455588888888887777664221 233 22 344456
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHH-HHHHHhcCChh
Q 007510 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVD 251 (601)
Q Consensus 173 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~ 251 (601)
...|++..|...|+.+.+.+ ++...+++-++......|.++.+.-..+-.... ..+....++++ +.+--+.++++
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~---~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN---RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc---cCHHHHHHHHHHHHHHhhhcchh
Confidence 67899999999999998774 334667887777777778887777666555432 23333333332 23335666777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHH--HHHHHhcC--CHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHhcC
Q 007510 252 RAREVYKMIHKYNIKGTPEVYTIA--INCCSQTG--DWEFACSVYDDMTKKGVIP---------DEVFLSALIDFAGHAG 318 (601)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~a~~~~~~m~~~~~~p---------~~~~~~~li~~~~~~g 318 (601)
.....+. ..+. ..|... .....+.. +.-.-.+..+.+.+.-+.| -...|..++....-.
T Consensus 1536 ~~e~~l~---~~n~----e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~- 1607 (2382)
T KOG0890|consen 1536 LLESYLS---DRNI----EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL- 1607 (2382)
T ss_pred hhhhhhh---cccc----cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-
Confidence 6666554 2221 233322 22222221 1111112222222221110 001222222221111
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHH-HHhCCCCC-----CHHHHHHHHHHHHc
Q 007510 319 KVEAAFEILQEAKNQGISVGII------SYSSLMGACSNAKNWQKALELYEH-MKSIKLKP-----TVSTMNALITALCD 386 (601)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~-----~~~~~~~li~~~~~ 386 (601)
+-........ +..++.. -|-.-+..-....+..+-+--+++ +......| -..+|-...+...+
T Consensus 1608 ---el~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~ 1682 (2382)
T KOG0890|consen 1608 ---ELENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL 1682 (2382)
T ss_pred ---HHHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh
Confidence 0000001110 1111111 111111111111111111111111 11111122 24678888888888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007510 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (601)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 437 (601)
+|+++.|...+-...+.+ .| ..+.-...-.-+.|+...|..++++...
T Consensus 1683 aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred cccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 999999988877776654 23 3344555667788999999999988774
No 405
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.68 E-value=1.4e+02 Score=23.50 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=18.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 007510 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (601)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 166 (601)
+++.+.+|...++|+++.+.|.++| ..+...-+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~ 99 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAK 99 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3445556666666666666666666 44443333
No 406
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.31 E-value=3.2e+02 Score=29.18 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 007510 309 ALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQ------KALELYEHMKSIKLKPTVSTMNAL 380 (601)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~~~~~~~~~l 380 (601)
+++.+|...|++..+.++++.....+ -+.-...+|..|+-..+.|.++ .|.+.+++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888989999999988888877643 2333456777888888888653 3444444433 45677777777
Q ss_pred HHHHHc
Q 007510 381 ITALCD 386 (601)
Q Consensus 381 i~~~~~ 386 (601)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 765544
No 407
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.97 E-value=2.5e+02 Score=26.84 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=51.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----------cCCHHHH
Q 007510 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----------SGAVDRA 216 (601)
Q Consensus 147 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~A 216 (601)
.++|+.+...++.|.-.++.-+.-.+.+.=.+.+++.+|+.+... ..-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467788888888888888777777777888888888888888753 2225555555543 4788888
Q ss_pred HHHHHHh
Q 007510 217 FDVLAEM 223 (601)
Q Consensus 217 ~~~~~~~ 223 (601)
+++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 8887664
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.92 E-value=1.6e+02 Score=22.32 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=24.9
Q ss_pred HHhcCChHHHHHHHHHHHH----cCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007510 102 CASSKDSEGAFQVLRLVQE----AGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~----~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 154 (601)
..+.|++..|.+.+.+..+ .+.... ....-.+...+...|+.++|.+.+++.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3456667666554444332 221110 1122223344455566666666666554
No 409
>PHA02875 ankyrin repeat protein; Provisional
Probab=34.68 E-value=4.9e+02 Score=26.21 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=16.2
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHH
Q 007510 138 AKSGKVDAMFEVFHEMVNAGIEPNVHT--YGALIDGCAKAGQVA 179 (601)
Q Consensus 138 ~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~ 179 (601)
++.|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~ 49 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE 49 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH
Confidence 344554333 33334455554322 223334444555544
No 410
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.32 E-value=2.9e+02 Score=24.27 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=16.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 007510 345 LMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
.+-.|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34567777777777777777765
No 411
>PRK10941 hypothetical protein; Provisional
Probab=33.69 E-value=4.2e+02 Score=25.05 Aligned_cols=75 Identities=19% Similarity=0.115 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 007510 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGM 453 (601)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-g~~p~~~~~~~li~~ 453 (601)
.+.+-.+|.+.++++.|++..+.+.. +.|+ ..-+.--.-.|.+.|.+..|..-++..++. .-.|+...-...+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 34566778888888888888888877 4555 344555555688888888888888877654 444555554444433
No 412
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=33.28 E-value=1.8e+02 Score=21.95 Aligned_cols=57 Identities=12% Similarity=0.262 Sum_probs=35.2
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 007510 46 DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (601)
Q Consensus 46 ~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 107 (601)
.+++.+.+.|++.... ... +-......+.+.++++.++...+.+|..+..++-..+.
T Consensus 24 ~v~~~L~~~gvlt~~~-~~~----I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 24 ELLIHLLQKDILTDSM-AES----IMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHcCCCCHHH-HHH----HHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 4677777777653322 111 11222345777788888887777788888777765544
No 413
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.13 E-value=1.8e+02 Score=30.49 Aligned_cols=152 Identities=12% Similarity=0.015 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHH
Q 007510 159 EPNVHTYGALIDGCAKA--GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236 (601)
Q Consensus 159 ~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 236 (601)
-|+..+..+++.-.... ...+-+-.+|..|..- ..|--++.|...--+--.|+...|.+.+....... +... .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~-p~~~-~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLA-PLQQ-DVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccC-hhhh-ccc
Confidence 46666666665544332 2234455566656532 23333333322222344688888888877765321 1122 233
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (601)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (601)
...|.....+.|...+|..++....... ...+-++..+.++|.-..+.+.|++.|++..+.... +.+.-+.+...-|
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 4456666677788888888888777665 445577888899999999999999999998887654 5666666665544
No 414
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=33.05 E-value=27 Score=35.36 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=28.8
Q ss_pred CCchhHHHHHHHHHHhCCCCCccccCCCCeeeccc
Q 007510 548 GEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDAR 582 (601)
Q Consensus 548 g~~~~~a~~~~~~~~~~g~~p~~~~~~~~~~~~~~ 582 (601)
||. .+.+-.+++|.+.|.+|.+|...|.++|++-
T Consensus 419 GR~-QEvM~VLee~mr~g~ipe~PVYlDGMI~Eat 452 (637)
T COG1782 419 GRS-QEVMIVLEEAMRKGLIPEVPVYLDGMIWEAT 452 (637)
T ss_pred ccc-ceehhHHHHHHhcCCCCCCceeeeeeeeehh
Confidence 553 3567789999999999999999999999764
No 415
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.04 E-value=1e+02 Score=29.34 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 007510 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129 (601)
Q Consensus 94 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 129 (601)
-||..|....+.||+++|+.++++..+.|+.--..+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 355667777777777777777777776665433333
No 416
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=32.81 E-value=6.7e+02 Score=27.16 Aligned_cols=284 Identities=13% Similarity=0.124 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHH
Q 007510 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-------VAKAFGAYGIMRSKNVKPDRVV 199 (601)
Q Consensus 127 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~~ 199 (601)
..+|. +|-.|.++|++++|.++..+.... .......+-..+..|....+ -++...-|.+........|+.=
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 34554 556778999999999999554432 24455667778888876532 2356666766665532224432
Q ss_pred ---HHHHHHHHhccC-CHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHHhcC
Q 007510 200 ---FNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-----------VDRAREVYKMIHKYN 264 (601)
Q Consensus 200 ---~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----------~~~a~~~~~~~~~~~ 264 (601)
|..+ ..|--.. ... .+..+..-|-.+--.+.+... +++........-+..
T Consensus 190 ~AvY~il-g~cD~~~~~~~--------------~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~ 254 (613)
T PF04097_consen 190 RAVYKIL-GRCDLSRRHLP--------------EVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESH 254 (613)
T ss_dssp HHHHHHH-HT--CCC-S-T--------------TC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGG
T ss_pred HHHHHHH-hcCCccccchH--------------HHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhh
Confidence 2222 1111100 000 111111122111111122111 112222222222222
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHH
Q 007510 265 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYS 343 (601)
Q Consensus 265 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~ 343 (601)
+.+ ....-.....+.-.|+++.|.+.+.+ ..+...|.+.+...+.-|.- +......-..+.... -.|...-+.
T Consensus 255 F~~-~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gL---L~~~~~~~~~lls~~~~~~~~ln~a 328 (613)
T PF04097_consen 255 FNA-GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGL---LRVSDSSSAPLLSVDPGDPPPLNFA 328 (613)
T ss_dssp CTT-------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HH
T ss_pred ccc-chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCC---CCCCCccccceeeecCCCCCCcCHH
Confidence 222 11112233455678999999998877 22223355555555544332 222211112222211 011125577
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH-HHHcCCChhH-----------HHHHHHH---HHhCC
Q 007510 344 SLMGACSN---AKNWQKALELYEHMKSIKLKPT-VSTMNALIT-ALCDGDQLPK-----------TMEVLSD---MKSLG 404 (601)
Q Consensus 344 ~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~-~~~~~g~~~~-----------A~~~~~~---m~~~g 404 (601)
.||..|.+ ..+..+|.+.|--+....- |+ ...+...+. .....++++. ---++++ +..
T Consensus 329 rLI~~Y~~~F~~td~~~Al~Y~~li~~~~~-~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~-- 405 (613)
T PF04097_consen 329 RLIGQYTRSFEITDPREALQYLYLICLFKD-PEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIK-- 405 (613)
T ss_dssp HHHHHHHHTTTTT-HHHHHHHHHGGGGS-S-CCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT--
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccC--
Confidence 88888875 4678888888887765432 22 222222222 1112221111 1112222 111
Q ss_pred CCC-CHHH---HHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 405 LCP-NTIT---YSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 405 ~~p-~~~t---~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
+.. +... ......-|...|++++|..+|..+.
T Consensus 406 ~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 406 FDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp -SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 222 2222 2334455777899999999997665
No 417
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=32.17 E-value=79 Score=22.17 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007510 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (601)
Q Consensus 128 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (601)
..++.++..+++..-.++++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444444444444444444
No 418
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=32.02 E-value=4.7e+02 Score=25.18 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=30.9
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhH
Q 007510 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (601)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~ 75 (601)
..+..|..+..+++..+.++.+++....+ |.--..|.+..+.+.+.|
T Consensus 101 d~~~~~~~~~~~~~~~~Ll~~~E~sl~~~--pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 101 DRVADYQELLAQADWAALLQRVEQSLSLA--PFWLDGQRLSAQALERLG 147 (301)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHCC
Confidence 44556777778888888888888877765 444455555555555544
No 419
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=31.95 E-value=4.5e+02 Score=24.89 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCC
Q 007510 357 KALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 404 (601)
Q Consensus 357 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 404 (601)
.|...|.+....+ +......+...|.. ..+.++|...|.+..+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555565555543 33333333333322 234556666666666554
No 420
>PRK12798 chemotaxis protein; Reviewed
Probab=31.23 E-value=5.6e+02 Score=25.83 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCCHHHHHHHHHHhhhCCCCCCCCHH----HHHHHHHHHHhcCC
Q 007510 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC-GQSGAVDRAFDVLAEMNAEVHPVDPDHI----TIGALMKACANAGQ 249 (601)
Q Consensus 175 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~ 249 (601)
.|+..++.+.+..+...-.++....+-.|+.+- ....+..+|+++|+...-. .|... ...--+......|+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl----aPGTLvEEAALRRsi~la~~~g~ 200 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL----APGTLVEEAALRRSLFIAAQLGD 200 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh----CCchHHHHHHHHHhhHHHHhcCc
Confidence 677888888887777666666677777776554 3445677888888876643 33322 22223344566677
Q ss_pred hhHHHHHHHHHH
Q 007510 250 VDRAREVYKMIH 261 (601)
Q Consensus 250 ~~~a~~~~~~~~ 261 (601)
.+++..+-..-.
T Consensus 201 ~~rf~~la~~Y~ 212 (421)
T PRK12798 201 ADKFEALARNYL 212 (421)
T ss_pred HHHHHHHHHHHH
Confidence 776665544433
No 421
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=30.96 E-value=5.1e+02 Score=25.22 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 007510 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
...++..+...+.+.|.++.|...+.++...+... .+...-.-+..+-..|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566667777777777777777777766532111 222333334555556777777777666555
No 422
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.76 E-value=2.3e+02 Score=21.12 Aligned_cols=62 Identities=11% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCChHHH
Q 007510 45 IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (601)
Q Consensus 45 ~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 111 (601)
..+++.+.+.|++..... - .+-......+.|.++++.++.....+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vlt~~~~-e----~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMI-E----EIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCHHHH-H----HHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 347777777776532211 1 1112234467788888888888888888888877776655444
No 423
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=30.72 E-value=5.7e+02 Score=25.72 Aligned_cols=228 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 007510 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (601)
Q Consensus 146 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 225 (601)
.+.++..+. +..--+..+.++...++.+..-..|.+..-.. .....+.-.|++...-.|+.....+.++.+.+
T Consensus 191 iLnil~slv------~ksqi~~ql~~~~s~~dp~~va~~~g~s~~y~-~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk 263 (525)
T KOG3677|consen 191 ILNILHSLV------DKSQISIQLTASVSNKDPALVALIFGASQPYA-NLGYFSLLGLLRMHILLGDHQATSQILDIMPK 263 (525)
T ss_pred HHHHHHHHH------HHHHHHHHHHHHhcCCChhhhhhhhccccHHH-hhhHHHHHHHHHHHHHhhhhHhhhhhhhcCch
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCH
Q 007510 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDE 304 (601)
Q Consensus 226 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~ 304 (601)
.-.+..|...+---+.-+|.-.+++.+|.+.|-.+.-. +..+...+...--.|...++ .+.-..++.-.+..-+.--.
T Consensus 264 ~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLly-Iqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iD 342 (525)
T KOG3677|consen 264 EIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLY-IQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMID 342 (525)
T ss_pred hhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhh
Q ss_pred HHHHHHHHHHH-------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007510 305 VFLSALIDFAG-------HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (601)
Q Consensus 305 ~~~~~li~~~~-------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 377 (601)
.++...+.-++ +.|+.+.-..+|......-..|.+..|..+..-|.+.--..+-...++......--|....|
T Consensus 343 ESi~s~l~Ek~~d~ml~mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~kePl~~qlq~fld~v~qq~dl~~~rsy 422 (525)
T KOG3677|consen 343 ESIHSQLAEKYGDKMLPMQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHKEPLLQQLQVFLDEVSQQADLPTIRSY 422 (525)
T ss_pred HHHHHHHHHHhcchhhhhhcCChHHHHHHHHHcCccccCCCCcccccccccccccHHHHHHHHHhHHHhhhccchHHHHH
Q ss_pred HHHH
Q 007510 378 NALI 381 (601)
Q Consensus 378 ~~li 381 (601)
..+.
T Consensus 423 lkly 426 (525)
T KOG3677|consen 423 LKLY 426 (525)
T ss_pred HHHH
No 424
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.54 E-value=6.6e+02 Score=26.39 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=10.3
Q ss_pred HHHHHhccCCHHHHHHHHHHh
Q 007510 203 LITACGQSGAVDRAFDVLAEM 223 (601)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~~ 223 (601)
++.-|.+.+++++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 444455555555555555444
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=30.30 E-value=1e+02 Score=16.97 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=11.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007510 249 QVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (601)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li 276 (601)
+.+.+..+|+++.... +.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 3444555555544432 23344444433
No 426
>PRK09857 putative transposase; Provisional
Probab=30.28 E-value=4.3e+02 Score=25.29 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 007510 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (601)
Q Consensus 130 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 196 (601)
+..++.-..+.++.++..++++.+.+. .+......-++..-+.+.|.-++++++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344554445556666666666665544 222333333455555556666666666666666665443
No 427
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.90 E-value=1.5e+02 Score=20.80 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007510 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (601)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 140 (601)
.|....++.++..+++..-.+.++..+.+....| .-+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3455667788888888777888888888888877 45667776666666554
No 428
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=29.67 E-value=3e+02 Score=23.72 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=21.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007510 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (601)
Q Consensus 135 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 178 (601)
..+...++.-.|.++++.+.+.+...+..|-..-+..+...|-+
T Consensus 33 ~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 33 RLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33333344445555555555555444444444444555554443
No 429
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.30 E-value=4.1e+02 Score=23.58 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHHH
Q 007510 318 GKVEAAFEILQEAK 331 (601)
Q Consensus 318 g~~~~a~~~~~~~~ 331 (601)
|+++.|...++-|.
T Consensus 135 ~~~~~Ae~~~~~ME 148 (204)
T COG2178 135 GSFEEAERFLKFME 148 (204)
T ss_pred ccHHHHHHHHHHHH
Confidence 44444444444443
No 430
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.07 E-value=2.1e+02 Score=20.96 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=14.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC
Q 007510 133 LITTCAKSGKVDAMFEVFHEMVNAG 157 (601)
Q Consensus 133 li~~~~~~g~~~~a~~~~~~m~~~g 157 (601)
+++.+.+|.-.++|+++.+.|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3444555555566666666665555
No 431
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=28.95 E-value=2.7e+02 Score=22.91 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=27.2
Q ss_pred CCCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 007510 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL 57 (601)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~ 57 (601)
.+++++-..+..| ++..|+++.|+++.+-..+.|..
T Consensus 45 g~qd~Vl~~~mvW--~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 45 GAQDDVLMTVMVW--LFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred CCcCchHHhhHhh--hhcccCHHHHHHHHHHHHHcCCC
Confidence 4556666666666 66889999999999999888863
No 432
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=28.84 E-value=9.3e+02 Score=27.60 Aligned_cols=252 Identities=13% Similarity=0.007 Sum_probs=134.7
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 007510 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (601)
Q Consensus 85 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 164 (601)
..+.++|+..-...+..+.+.+..+ +...+..+.+ .+|...-...+.++.+.+........+..+.. .+|..+
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~V 700 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVV 700 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHH
Confidence 3344677777777777777666533 4444444443 33444444555555544322222233333333 256666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 007510 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (601)
Q Consensus 165 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 244 (601)
-...+..+...+..+ ...+.. +.. .+|...-...+.++.+.+..+. + ..... .++..+-.....++
T Consensus 701 R~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l-~~~l~-----D~~~~VR~~aa~aL 766 (897)
T PRK13800 701 RAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---V-AGAAT-----DENREVRIAVAKGL 766 (897)
T ss_pred HHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---H-HHHhc-----CCCHHHHHHHHHHH
Confidence 666666665543211 122222 222 3455555566667766655432 2 22221 35555666666677
Q ss_pred HhcCChhH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007510 245 ANAGQVDR-AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (601)
Q Consensus 245 ~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (601)
...+..+. +...+..+.+ .++..+-.+.+.++.+.|....+...+..++.. +|...-...+.++...+. +++
T Consensus 767 ~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a 839 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVA 839 (897)
T ss_pred HHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cch
Confidence 66665432 2344444433 345677778888888888766554444444443 355555566677776665 345
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
...+..+.+ .++..+-...+.++.+.+....+...+....+
T Consensus 840 ~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 840 VPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 555555553 35666777777777775434456666666654
No 433
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=28.37 E-value=5.6e+02 Score=24.88 Aligned_cols=134 Identities=16% Similarity=0.096 Sum_probs=62.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCC
Q 007510 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPT 373 (601)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~ 373 (601)
.+..|...++++..+ ...++++-.+..+...+. |-.--...+.....-|++.|+-+.|.+.++..- ..|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 344455555555443 122233333333333332 211112344555666777777777776665543 2344555
Q ss_pred HHHHHHHHH-HHHcCCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007510 374 VSTMNALIT-ALCDGDQLPKTMEVLSDMKSLGLCPNTI----TYSILLVACERKDDVEVGLMLLSQAK 436 (601)
Q Consensus 374 ~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~ 436 (601)
+..+..=+. -|..+.-..+-++..+.+.+.|-..+.. +|..+- |....++.+|-.+|-...
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 544433222 2333333455555555566655444332 232221 333455666666665444
No 434
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=28.36 E-value=54 Score=22.80 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=29.8
Q ss_pred HHHhhCCCccccccccccccccccCCchhHHHHHHHHHHhCCCCCcccc
Q 007510 524 LVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSF 572 (601)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~a~~~~~~~~~~g~~p~~~~ 572 (601)
+...-|+.++-.. ..+..-|++.++|...|.++...|-+|...|
T Consensus 19 ~~~~Tgmn~~~s~-----~cLe~~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 19 FSAQTGMNAEYSQ-----MCLEDNNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred HHHHHCCCHHHHH-----HHHHHcCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3344456554321 2334457777899999999998899998765
No 435
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.08 E-value=3e+02 Score=21.65 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 307 LSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
|..++..|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555555555566666665555544
No 436
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.07 E-value=6.2e+02 Score=25.34 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=28.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHC
Q 007510 279 CSQTGDWEFACSVYDDMTKKGVIPDEV--FLSALIDFAGH--AGKVEAAFEILQEAKNQ 333 (601)
Q Consensus 279 ~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~--~g~~~~a~~~~~~~~~~ 333 (601)
+.+.+++..|.++|+.+... +.++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566677777777666665 333332 33334344432 34556666666655443
No 437
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.86 E-value=5.3e+02 Score=24.46 Aligned_cols=212 Identities=15% Similarity=0.100 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHH------HHHHHHHHHhhhHHHHHH-------HHHHhhCC-CCC
Q 007510 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV------YHARFFNVCKSQKAIKEA-------FRFFKLVP-NPT 91 (601)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A-------~~~~~~~~-~~~ 91 (601)
+.++...|.+++..++++|++.+.++...|+...... ....+..++.+.|+...- +++..... +..
T Consensus 4 ~~sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~ 83 (421)
T COG5159 4 KSSLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKI 83 (421)
T ss_pred cchHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhH
Confidence 3446778889999999999999999999886432222 222344555544443322 22222222 223
Q ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCC
Q 007510 92 LSTFNMLMSVCASS-KDSEGAFQVLRLVQEAGLKAD-----CKLYTTLITTCAKSGKVDAMFEVFHE----MVNAGIEPN 161 (601)
Q Consensus 92 ~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~g~~~~ 161 (601)
+...-+++.-+... ..++.-+.+.....+...+.. ...-..++..+.+.|++.+|+.+... +.+.+-.|+
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~ 163 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN 163 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc
Confidence 33444555544333 234444444444433221111 12234567777888888888765444 333333444
Q ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhhhCCCCCCCCH
Q 007510 162 VHTYGAL-IDGCAKAGQVAKAFGAYGIMRS----KNVKPDRVVFNALITAC--GQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (601)
Q Consensus 162 ~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~ 234 (601)
..+...+ -..|-.-.++.++..-+...+. .-++|-...---|+++- |...++..|...|-+..+.......|.
T Consensus 164 Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~ 243 (421)
T COG5159 164 LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDV 243 (421)
T ss_pred eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchH
Confidence 3332222 1234444444444444333321 12344444433444443 344566777777766655333333443
Q ss_pred HHH
Q 007510 235 ITI 237 (601)
Q Consensus 235 ~~~ 237 (601)
..+
T Consensus 244 kAc 246 (421)
T COG5159 244 KAC 246 (421)
T ss_pred HHH
Confidence 333
No 438
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=27.85 E-value=2.1e+02 Score=32.53 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=49.7
Q ss_pred CCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCC
Q 007510 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (601)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (601)
|+.+.. -...|..|-....+.++.++|..|...++......++......+.+.+.+.+|..+|....
T Consensus 75 Y~nD~R-fl~~~~~~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Gi 141 (974)
T KOG1166|consen 75 YRNDPR-FLILWCSLELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGI 141 (974)
T ss_pred ccccHH-HHHHHHhHHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 4445555556777888999999999888877777777777777777788888888887654
No 439
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.19 E-value=5.6e+02 Score=24.49 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhh
Q 007510 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (601)
Q Consensus 168 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 224 (601)
++..+.+.++.....+.+..+.. ...-...+..+...|++..|++++.+..
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44444455555555555555542 2333445555566667766666666554
No 440
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.17 E-value=2.8e+02 Score=20.96 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 007510 275 AINCCSQTGDWEFACSVYDDMT 296 (601)
Q Consensus 275 li~~~~~~g~~~~a~~~~~~m~ 296 (601)
+.......|++++|...+++..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444555566666666666654
No 441
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.15 E-value=5.3e+02 Score=24.19 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=10.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 007510 239 ALMKACANAGQVDRAREVYKMI 260 (601)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~ 260 (601)
.++..+.+.+++++....+.++
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHH
Confidence 3444455555555554444444
No 442
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.10 E-value=1.9e+02 Score=20.78 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=20.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 007510 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (601)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 282 (601)
+.+.|..++..+.... +.++..||++...+.++
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 4556666666665543 55667777776655443
No 443
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.04 E-value=1.3e+02 Score=17.66 Aligned_cols=11 Identities=0% Similarity=0.123 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q 007510 391 PKTMEVLSDMK 401 (601)
Q Consensus 391 ~~A~~~~~~m~ 401 (601)
+.|..+|++..
T Consensus 4 dRAR~IyeR~v 14 (32)
T PF02184_consen 4 DRARSIYERFV 14 (32)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 444
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.91 E-value=4.1e+02 Score=25.51 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=33.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 359 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (601)
Q Consensus 359 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 420 (601)
.++++.+.+.++.|.-.++.-+.-.+.+.=.+.+.+.+|+.+.. |+.-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 34556666666666666665555556666666666666666653 3333555555554
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.80 E-value=6.8e+02 Score=25.32 Aligned_cols=63 Identities=16% Similarity=0.037 Sum_probs=34.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCC----CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007510 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHP----VD-PDHITIGALMKACANAGQVDRAREVYKMIH 261 (601)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (601)
+...|++.++-.|++..|+++++.+.-...+ +. -...++--+.-+|.-.+++.+|.++|..+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777665322111 01 112233344555666677777777776554
No 446
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.63 E-value=3.5e+02 Score=21.95 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 007510 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHE 152 (601)
Q Consensus 110 ~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 152 (601)
.+.++|..|...|+... ..-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666555432 44555556666666666666666653
No 447
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=26.59 E-value=5.2e+02 Score=23.92 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCCChhHH
Q 007510 316 HAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST-MNALITALCDGDQLPKT 393 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A 393 (601)
...+++.|..-|.+.+..+ |+. .-|+.=+.+|.+..+++.+..=-.+..+. .||.+- .-.+..++.....+++|
T Consensus 22 ~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred chhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHH
Confidence 3455666666555555543 444 33445555667777777766655555542 455432 33345556666777777
Q ss_pred HHHHHHHH----hCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 007510 394 MEVLSDMK----SLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (601)
Q Consensus 394 ~~~~~~m~----~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 434 (601)
+..+.+.. +..+.|-......|..+=-..=.+.+..++.++
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77777653 233444445555555554333344444554443
No 448
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.31 E-value=7.2e+02 Score=25.49 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
+.+++-+++++.+.+.| .+| ....-|+.|.+.+++++|...+++-.+
T Consensus 68 ~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 34666677777777665 222 344556777888888888777776654
No 449
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=25.99 E-value=2.2e+02 Score=29.06 Aligned_cols=49 Identities=10% Similarity=0.024 Sum_probs=21.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 316 HAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMK 366 (601)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 366 (601)
..+.++.|..++.++++.. ||-. .|..=..++.+.+++..|..=+....
T Consensus 16 ~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred ccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhh
Confidence 3445555555555555442 2222 22222244455555555544444443
No 450
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.97 E-value=2.4e+02 Score=20.68 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=17.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGII 340 (601)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 340 (601)
+++.+.++.-.++|+++++.+.++| ..+..
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 4444555566667777777777666 33433
No 451
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.79 E-value=6.9e+02 Score=25.11 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007510 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD---EVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (601)
Q Consensus 270 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 332 (601)
..+.-+...|...|+++.|++.+.+...- +... ...+..+|....-.|++.....+..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45677888888888888888888885442 1111 22333444444455666666666555544
No 452
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=25.50 E-value=6.8e+02 Score=24.88 Aligned_cols=212 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred CCCChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 007510 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (601)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~ 100 (601)
+|-+++.-+..-..+.++|+.+.|-+++++.+- ......|..+-....+ ......-++--..-|...|-++.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf----~~e~~~~~~F~~~~~~---~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALF----AFERAFHPSFSPFRSN---LTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHhhhhhcc---cccCccccCCccccchHHHHHHHH
Q ss_pred H---HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 007510 101 V---CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA-KSGKVDAMFEVFHEMVNAGIEPN------VHTYGALID 170 (601)
Q Consensus 101 ~---~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~li~ 170 (601)
. +.+.|.+..|+++.+.+...+..-|+.....+|+.|+ +.++++--+++.+..... ...+ -..|+..+.
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~-~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK-CYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh-hhhhhhhhCccHHHHHHHH
Q ss_pred HHHhcCC--------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHH
Q 007510 171 GCAKAGQ--------------VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236 (601)
Q Consensus 171 ~~~~~g~--------------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 236 (601)
.+...+. .+.|...+.+.... =+.....|+..+ .-..+.+..-............+....
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKL--GISPDSSVSNHPHFSPSSWSSEPPSDS 261 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHh--ccccchhhhcCCCCcccccccCCchhH
Q ss_pred HHHHHHHHHh
Q 007510 237 IGALMKACAN 246 (601)
Q Consensus 237 ~~~ll~~~~~ 246 (601)
...++..|+.
T Consensus 262 ~~ll~~lYv~ 271 (360)
T PF04910_consen 262 LKLLTELYVE 271 (360)
T ss_pred HHHHHHHHHH
No 453
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.85 E-value=3.3e+02 Score=25.22 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=17.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 29 LHSYNRLIRQGRISECIDLLEDME 52 (601)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~m~ 52 (601)
.+....+...|+..+|++-|+.=.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~ 37 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHI 37 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344566668888999988887544
No 454
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=24.71 E-value=6.7e+02 Score=24.59 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007510 390 LPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (601)
Q Consensus 390 ~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~~~ 455 (601)
.++.+.++.++... .|+. .-|..+.......|.++..+.+|++++..|..|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45777788877763 5664 3467788888889999999999999999999998888888888765
No 455
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=24.63 E-value=8.2e+02 Score=25.53 Aligned_cols=166 Identities=10% Similarity=0.049 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 007510 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239 (601)
Q Consensus 160 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 239 (601)
.|....-+++..+..+...+-+..+..+|..-| .+...+..++..|... ..+.-..+++++.+- . -.|++.-..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~--d-fnDvv~~Re 137 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY--D-FNDVVIGRE 137 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--c-chhHHHHHH
Confidence 344555566666666666666666666666553 2455566666666655 334445555554432 1 112222222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 007510 240 LMKACANAGQVDRAREVYKMIHKYNIKG-----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDF 313 (601)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~ 313 (601)
|...|-+ ++.+.+...|.++..+-++. -...|.-++..- ..+.+..+.+..++... |..--.+.+.-+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 3333333 55566666665555443211 112344443321 23344444444444332 222222333444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 007510 314 AGHAGKVEAAFEILQEAKNQG 334 (601)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~ 334 (601)
|....++++|++++..+.+..
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD 235 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc
Confidence 555555666666655555543
No 456
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=24.07 E-value=3.1e+02 Score=21.70 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=13.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 311 IDFAGHAGKVEAAFEILQEAKNQG 334 (601)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~~~~~~ 334 (601)
++...++...++|+++++.|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344445555666666666666665
No 457
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.05 E-value=68 Score=30.94 Aligned_cols=92 Identities=12% Similarity=0.030 Sum_probs=54.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCCHHHHH
Q 007510 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVGL 429 (601)
Q Consensus 351 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 429 (601)
..|.++.|++.|...++.+ ++....|..=.+.+.+.+....|++=+....+ +.||.. -|-.=-.+-.-.|+++++.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 3555777777777666554 34444555555566667777777666666655 444432 2333333444567777777
Q ss_pred HHHHHHHHCCCCCCHH
Q 007510 430 MLLSQAKEDGVIPNLV 445 (601)
Q Consensus 430 ~~~~~~~~~g~~p~~~ 445 (601)
..+....+.++.+...
T Consensus 203 ~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 203 HDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHhccccHHHH
Confidence 7777777766655543
No 458
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.00 E-value=6.5e+02 Score=24.18 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=8.0
Q ss_pred HHHHHHHHHHcCCChh
Q 007510 376 TMNALITALCDGDQLP 391 (601)
Q Consensus 376 ~~~~li~~~~~~g~~~ 391 (601)
+|..|+.+++..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 4445555555555444
No 459
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=23.80 E-value=4.3e+02 Score=21.97 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=10.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 007510 380 LITALCDGDQLPKTMEVLSDMKS 402 (601)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~ 402 (601)
|.-++.+.+++++++++.+.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 33344444555555554444444
No 460
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=23.20 E-value=6e+02 Score=23.51 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=39.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhccCCHHHHH
Q 007510 140 SGKVDAMFEVFHEMVNAGIEPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI-TACGQSGAVDRAF 217 (601)
Q Consensus 140 ~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~A~ 217 (601)
...++.|..-|.+.+.. .|+. .-|+.-+-.+.+..+++.+..--.+.++. .||.+--..++ .++.....+++|+
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHH
Confidence 34455555544444433 4554 33444455555566666655544444433 44444333322 3444555566666
Q ss_pred HHHHHh
Q 007510 218 DVLAEM 223 (601)
Q Consensus 218 ~~~~~~ 223 (601)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 666554
No 461
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=22.82 E-value=2.4e+02 Score=20.20 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=27.0
Q ss_pred CChhhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch
Q 007510 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60 (601)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~ 60 (601)
.+....+..|..+++..+++.+..-+..-...+.+|++
T Consensus 27 ~~~k~~v~~W~~~L~d~~ye~v~~al~~~i~~~kfPPs 64 (71)
T PF11417_consen 27 TDSKETVDLWYDMLKDYDYEIVMKALKKHIATNKFPPS 64 (71)
T ss_dssp STHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-SS---
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcC
Confidence 44566789999999999999999999887766654543
No 462
>PRK11619 lytic murein transglycosylase; Provisional
Probab=22.62 E-value=1e+03 Score=25.96 Aligned_cols=313 Identities=10% Similarity=0.034 Sum_probs=156.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCC-CCH-HHHHHHHHHHHhcCChHH
Q 007510 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTL-STFNMLMSVCASSKDSEG 110 (601)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~ 110 (601)
...++.|+...+.++..++... |.........+..-......++...+++.-+. |-. ..-...+..+.+.+++..
T Consensus 41 ~~a~~~g~~~~~~~~~~~l~d~---pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 41 KQAWDNRQMDVVEQLMPTLKDY---PLYPYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHHHCCCHHHHHHHHHhccCC---CcHhHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 4445778888877777665422 22222211111111112235566666666542 222 222333444556666665
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHH
Q 007510 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK--AFGAYGIM 188 (601)
Q Consensus 111 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m 188 (601)
.+..+. ..+.+...-.....+....|+.++|......+=..| ...+...+.++..+.+.|.... ..+-++.+
T Consensus 118 ~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 555221 124456666677777888888777766666654444 3345667777777776665432 22222222
Q ss_pred HhCCCCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH--hcCChhHHH
Q 007510 189 RSKNVKPDRVVFNALITACGQ------------SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA--NAGQVDRAR 254 (601)
Q Consensus 189 ~~~g~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~ 254 (601)
...| +...-..+...+.. ..+...+..++.. +.++...-..++-++. ...+.+.|.
T Consensus 192 l~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-------~~~~~~~~~~~~~~l~Rlar~d~~~A~ 261 (644)
T PRK11619 192 MKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-------TGPTDFTRQMAAVAFASVARQDAENAR 261 (644)
T ss_pred HHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-------cCCChhhHHHHHHHHHHHHHhCHHHHH
Confidence 2222 22222222221100 0111111111111 1122211111111222 334568888
Q ss_pred HHHHHHHhcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 255 EVYKMIHKYN-IKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (601)
Q Consensus 255 ~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 331 (601)
.++....... ..+. ..++..+.......+...++...+........ |......-+......++++.+...+..|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~ 339 (644)
T PRK11619 262 LMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGLNTWLARLP 339 (644)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHHHHHHHhcC
Confidence 8888764443 2111 12344444444444335566666665443322 33444445555558889998888888874
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007510 332 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (601)
Q Consensus 332 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 367 (601)
... .-...-.--+..++...|+.++|...|+.+..
T Consensus 340 ~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 340 MEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred Hhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 432 22344455677777778999999999999853
No 463
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.62 E-value=1.1e+03 Score=26.40 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=53.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 007510 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (601)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 106 (601)
+....|+.+...|+++.|++.-..-++ --..+...-+.++-..+++..|.+.+.++ ..++..+.--+....
T Consensus 360 E~R~vWk~yLd~g~y~kAL~~ar~~p~-----~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 360 EARDVWKTYLDKGEFDKALEIARTRPD-----ALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEIN 430 (911)
T ss_pred chHHHHHHHHhcchHHHHHHhccCCHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcC
Confidence 445679999999999999876543211 11223333445566677888888888876 334555555555565
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH
Q 007510 107 DSEGAFQVLRLVQEAGLKADCK 128 (601)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~~~~~ 128 (601)
+.+ ++..|-.=+-.+++|...
T Consensus 431 ~~~-~L~~~L~KKL~~lt~~dk 451 (911)
T KOG2034|consen 431 QER-ALRTFLDKKLDRLTPEDK 451 (911)
T ss_pred CHH-HHHHHHHHHHhhCChHHH
Confidence 555 444443222223444433
No 464
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.46 E-value=4.5e+02 Score=24.32 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007510 274 IAINCCSQTGDWEFACSVYDDMTK----KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (601)
Q Consensus 274 ~li~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (601)
.+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+--
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 344445555555555555554421 121 1222334444445555555555544433
No 465
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=22.31 E-value=6.5e+02 Score=23.57 Aligned_cols=26 Identities=8% Similarity=0.112 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 007510 95 FNMLMSVCASSKDSEGAFQVLRLVQE 120 (601)
Q Consensus 95 ~~~li~~~~~~g~~~~A~~~~~~m~~ 120 (601)
.+.+++.+.+.+....|..+.+.+..
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 45566666666777777777666653
No 466
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.93 E-value=5.2e+02 Score=22.28 Aligned_cols=60 Identities=7% Similarity=0.033 Sum_probs=34.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 007510 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (601)
Q Consensus 153 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 213 (601)
+.+.|+..+.. -..++..+...++.-.|.++++.+.+.+...+..|..-.|..+...|-+
T Consensus 17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34455544433 3344444444555667777777777776666666655566666666654
No 467
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.37 E-value=4.8e+02 Score=21.78 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007510 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (601)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 353 (601)
.+-+.+.+.|..++..-...+-......+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 3 ~~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 3 DNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 468
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.16 E-value=2.7e+02 Score=21.87 Aligned_cols=28 Identities=11% Similarity=0.063 Sum_probs=13.0
Q ss_pred HHhhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007510 418 ACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (601)
Q Consensus 418 a~~~~g~~~~a~~~~~~~~~~g~~p~~~ 445 (601)
.....+..-.|.++++.+.+.+...+..
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~ 36 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLA 36 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHH
Confidence 3333344444555555555554443433
No 469
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=21.10 E-value=3.7e+02 Score=20.25 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007510 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (601)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 299 (601)
+.|......+...+...|++++|++.+-.+.+..
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4444555556666666666666666666655543
No 470
>PRK12798 chemotaxis protein; Reviewed
Probab=21.06 E-value=8.7e+02 Score=24.56 Aligned_cols=153 Identities=15% Similarity=0.137 Sum_probs=85.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCCH
Q 007510 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA-KAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAV 213 (601)
Q Consensus 139 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~ 213 (601)
-.|+.+++.+.+..+.....++....|-+|+.+-. ...+...|+++|+...-. -|-+. ...--+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 46888999999999887777778888888887654 456889999999987644 33322 233334456778888
Q ss_pred HHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007510 214 DRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQV---DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (601)
Q Consensus 214 ~~A~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 289 (601)
+++..+-.+..... ...|= ...+..+...+.+.++- +.-..++..|.. ..-...|..+...-.-.|+.+-|.
T Consensus 202 ~rf~~la~~Y~rRF-~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~ 277 (421)
T PRK12798 202 DKFEALARNYLRRF-RHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELAR 277 (421)
T ss_pred HHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHH
Confidence 87666544443321 11111 11122223333333322 222222222211 111345666666666666666665
Q ss_pred HHHHHHHH
Q 007510 290 SVYDDMTK 297 (601)
Q Consensus 290 ~~~~~m~~ 297 (601)
..-.+...
T Consensus 278 ~As~~A~~ 285 (421)
T PRK12798 278 FASERALK 285 (421)
T ss_pred HHHHHHHH
Confidence 55555443
No 471
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=21.06 E-value=7.9e+02 Score=24.15 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007510 214 DRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (601)
Q Consensus 214 ~~A~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 279 (601)
+++..+++.+... -|+ ..-|-.+.....+.|.++..+.+|++....|..|-...-..++..+
T Consensus 120 eei~~~L~~li~~----IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKN----IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhc----CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 4555555555543 233 2235555666666666777777777777666666555555555443
No 472
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=20.83 E-value=2.3e+02 Score=28.87 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=56.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007510 102 CASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (601)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 180 (601)
....++++.|..++.+.++. .|+... |..--.++.+.+++..|+.=+.+.++.. +-....|-.=..++.+.+++.+
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHH
Confidence 34456677777777777764 454333 3333366677777777777666666543 1112223333334444555666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007510 181 AFGAYGIMRSKNVKPDRVVFNALITAC 207 (601)
Q Consensus 181 A~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (601)
|+..|+..... .|+..-..-.+.-|
T Consensus 91 A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 66666655543 66666665555544
No 473
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=20.78 E-value=8.2e+02 Score=24.81 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--------HHHhcCCHHHHHHH
Q 007510 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID--------GCAKAGQVAKAFGA 184 (601)
Q Consensus 113 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--------~~~~~g~~~~A~~~ 184 (601)
++-..+....+.||..+.|-+...++..-..+-...+|+-..+.+ .|=.+.+.+||- .-.+...-+++++.
T Consensus 169 elc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikf 247 (669)
T KOG3636|consen 169 ELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKF 247 (669)
T ss_pred HHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHH
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHh
Q 007510 185 YGIMRSKNVKPDRVVFNALITACG 208 (601)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~ 208 (601)
++.|...----|..-+..|..-|+
T Consensus 248 Lenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 248 LENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HHcCchhcccccchhHHHHHHHHh
No 474
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=20.78 E-value=9.6e+02 Score=24.94 Aligned_cols=68 Identities=9% Similarity=0.109 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 007510 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (601)
Q Consensus 89 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 157 (601)
+.|+..|...+..|-+.+.+.+.-.+|..|.... -.||..++.+. .-|....+++.|..+|..-++..
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhhcC
Confidence 3488889888888888887888899998888653 23343333222 22333344788888887777653
No 475
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.70 E-value=4.1e+02 Score=20.58 Aligned_cols=42 Identities=7% Similarity=-0.045 Sum_probs=19.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007510 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (601)
Q Consensus 148 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 189 (601)
+.+++....+...-+-....|.-.|++.|+.+.|.+-|+.=+
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 334444433322222333444445566666666666665443
No 476
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=20.59 E-value=1.2e+03 Score=25.80 Aligned_cols=46 Identities=17% Similarity=0.168 Sum_probs=29.3
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007510 286 EFACSVYDDM-TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (601)
Q Consensus 286 ~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 333 (601)
++....+... ...|+..+......++... .|++..++.+++++...
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 4445555443 3457766777776666544 58888888888776553
No 477
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=20.21 E-value=1.3e+03 Score=26.37 Aligned_cols=155 Identities=11% Similarity=-0.017 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHH
Q 007510 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA-AFEILQEAKNQGISVGIISYSS 344 (601)
Q Consensus 266 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~ 344 (601)
.++..+-...+.++.+.+..+. +..... .++...-.....++...+..+. +...+..+.+ .++..+-.+
T Consensus 725 D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~a 794 (897)
T PRK13800 725 DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAA 794 (897)
T ss_pred CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHH
Confidence 3444555555555555444322 112221 2344445555555555554332 2333444433 235666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 007510 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (601)
Q Consensus 345 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 424 (601)
.+.++.+.|....+...+..+.+ .++...-...+.++.+.+. +++...+..+.+ .|+...-...+.++.+.+.
T Consensus 795 A~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~ 867 (897)
T PRK13800 795 ALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPG 867 (897)
T ss_pred HHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCC
Confidence 77777777765544333444443 3454454556666666654 445566555553 4566666666666666533
Q ss_pred HHHHHHHHHHHHH
Q 007510 425 VEVGLMLLSQAKE 437 (601)
Q Consensus 425 ~~~a~~~~~~~~~ 437 (601)
...+...+..+.+
T Consensus 868 ~~~a~~~L~~al~ 880 (897)
T PRK13800 868 DPAARDALTTALT 880 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 3455666655554
No 478
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=20.05 E-value=2.4e+02 Score=20.29 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007510 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (601)
Q Consensus 421 ~~g~~~~a~~~~~~~~~~g~~p~~~~~~~li~~ 453 (601)
-.|+.+.+.+++++..+.|..|.......+..+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~ 45 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPA 45 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455666666677666666666666655555555
Done!