Query 007511
Match_columns 601
No_of_seqs 550 out of 3277
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 11:36:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007511.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007511hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13796 GTPase YqeH; Provisio 100.0 7.8E-60 1.7E-64 502.5 23.3 365 82-534 1-365 (365)
2 TIGR03597 GTPase_YqeH ribosome 100.0 4E-57 8.6E-62 481.1 23.6 360 84-534 1-360 (360)
3 KOG1249 Predicted GTPases [Gen 100.0 1.6E-51 3.4E-56 435.2 7.2 482 66-560 58-555 (572)
4 COG1126 GlnQ ABC-type polar am 99.9 1.2E-27 2.6E-32 230.0 7.1 168 281-450 3-214 (240)
5 COG3839 MalK ABC-type sugar tr 99.9 2.1E-25 4.6E-30 231.9 12.5 179 280-459 3-224 (338)
6 cd01855 YqeH YqeH. YqeH is an 99.9 5.4E-25 1.2E-29 214.3 14.0 189 156-378 1-190 (190)
7 COG1135 AbcC ABC-type metal io 99.9 1.9E-25 4.1E-30 225.0 10.2 174 282-456 3-226 (339)
8 COG3842 PotA ABC-type spermidi 99.9 1.5E-25 3.3E-30 234.2 8.8 174 280-454 5-219 (352)
9 COG1120 FepC ABC-type cobalami 99.9 8.8E-25 1.9E-29 219.4 11.8 170 281-452 3-219 (258)
10 COG1116 TauB ABC-type nitrate/ 99.9 1.5E-24 3.2E-29 214.3 10.7 167 281-448 4-207 (248)
11 COG1136 SalX ABC-type antimicr 99.9 2.3E-24 4.9E-29 212.4 10.8 167 283-450 4-220 (226)
12 COG1125 OpuBA ABC-type proline 99.9 1E-24 2.2E-29 213.9 6.3 173 281-454 2-218 (309)
13 COG1161 Predicted GTPases [Gen 99.9 1.7E-23 3.8E-28 219.5 14.4 305 155-532 1-320 (322)
14 COG2884 FtsE Predicted ATPase 99.9 3.9E-24 8.6E-29 201.5 7.8 171 281-453 2-218 (223)
15 COG3638 ABC-type phosphate/pho 99.9 2.7E-24 5.8E-29 209.4 6.3 168 281-450 4-226 (258)
16 COG1124 DppF ABC-type dipeptid 99.9 1.6E-23 3.4E-28 205.4 11.3 171 281-452 4-222 (252)
17 COG1118 CysA ABC-type sulfate/ 99.9 5E-24 1.1E-28 214.3 8.0 173 281-454 3-220 (345)
18 COG1121 ZnuC ABC-type Mn/Zn tr 99.9 2E-23 4.3E-28 208.7 9.9 168 281-450 5-217 (254)
19 COG1127 Ttg2A ABC-type transpo 99.9 5.2E-23 1.1E-27 200.9 9.6 170 280-450 8-224 (263)
20 COG1131 CcmA ABC-type multidru 99.9 1.2E-22 2.5E-27 210.9 6.6 171 281-452 5-217 (293)
21 COG4148 ModC ABC-type molybdat 99.9 1.8E-21 3.8E-26 193.2 13.6 236 285-533 5-288 (352)
22 PRK11432 fbpC ferric transport 99.9 4.7E-22 1E-26 211.2 9.5 173 280-453 6-218 (351)
23 PRK11650 ugpC glycerol-3-phosp 99.9 4.4E-22 9.5E-27 212.0 9.0 171 281-452 4-215 (356)
24 COG4181 Predicted ABC-type tra 99.9 1E-21 2.2E-26 182.2 10.2 159 292-451 22-225 (228)
25 TIGR03265 PhnT2 putative 2-ami 99.9 6.6E-22 1.4E-26 210.4 9.3 173 280-453 4-216 (353)
26 TIGR03258 PhnT 2-aminoethylpho 99.9 2.7E-21 5.8E-26 206.2 13.7 174 279-453 4-220 (362)
27 COG0410 LivF ABC-type branched 99.9 7.8E-22 1.7E-26 192.2 8.3 169 282-451 5-216 (237)
28 PRK09452 potA putrescine/sperm 99.9 8.7E-22 1.9E-26 210.7 9.3 172 281-453 15-226 (375)
29 TIGR02314 ABC_MetN D-methionin 99.8 1.5E-21 3.3E-26 206.5 8.1 170 281-451 2-220 (343)
30 PRK13537 nodulation ABC transp 99.8 1.5E-21 3.3E-26 204.1 7.8 170 280-451 7-217 (306)
31 PRK10851 sulfate/thiosulfate t 99.8 3E-21 6.4E-26 205.4 10.1 171 281-452 3-217 (353)
32 PRK11607 potG putrescine trans 99.8 3.4E-21 7.3E-26 206.5 9.4 172 281-453 20-231 (377)
33 PRK11000 maltose/maltodextrin 99.8 4E-21 8.7E-26 205.7 8.7 171 281-452 4-214 (369)
34 COG0411 LivG ABC-type branched 99.8 1.3E-21 2.9E-26 191.9 4.5 167 283-450 7-228 (250)
35 PRK13536 nodulation factor exp 99.8 5.5E-21 1.2E-25 202.3 8.1 170 280-451 41-251 (340)
36 cd03261 ABC_Org_Solvent_Resist 99.8 6.3E-21 1.4E-25 191.8 8.1 168 283-451 3-216 (235)
37 cd03259 ABC_Carb_Solutes_like 99.8 6E-21 1.3E-25 189.1 7.6 168 283-451 3-210 (213)
38 COG1122 CbiO ABC-type cobalt t 99.8 7.7E-21 1.7E-25 190.3 8.3 169 281-450 4-217 (235)
39 cd03265 ABC_DrrA DrrA is the A 99.8 7.4E-21 1.6E-25 189.4 6.9 168 283-451 3-211 (220)
40 TIGR01186 proV glycine betaine 99.8 5.4E-21 1.2E-25 203.5 6.0 163 289-452 2-210 (363)
41 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 1.6E-20 3.4E-25 186.7 8.3 167 283-450 3-218 (218)
42 cd03226 ABC_cobalt_CbiO_domain 99.8 1.3E-20 2.8E-25 185.6 7.7 164 285-450 4-204 (205)
43 COG4598 HisP ABC-type histidin 99.8 3.5E-21 7.5E-26 179.9 3.1 173 280-454 6-234 (256)
44 TIGR01288 nodI ATP-binding ABC 99.8 1.3E-20 2.8E-25 196.8 7.9 169 281-451 5-214 (303)
45 TIGR01188 drrA daunorubicin re 99.8 6.3E-21 1.4E-25 199.1 5.5 161 289-451 2-203 (302)
46 cd03296 ABC_CysA_sulfate_impor 99.8 2.1E-20 4.6E-25 188.5 9.0 170 281-451 3-216 (239)
47 TIGR00960 3a0501s02 Type II (G 99.8 1.5E-20 3.2E-25 186.7 7.3 167 282-450 3-216 (216)
48 cd03301 ABC_MalK_N The N-termi 99.8 2E-20 4.3E-25 185.2 7.9 168 283-451 3-210 (213)
49 PRK11153 metN DL-methionine tr 99.8 1.8E-20 3.9E-25 198.9 7.8 169 282-451 3-220 (343)
50 cd03293 ABC_NrtD_SsuB_transpor 99.8 2.2E-20 4.8E-25 186.0 7.8 168 283-451 3-213 (220)
51 PRK09536 btuD corrinoid ABC tr 99.8 2.8E-20 6.1E-25 200.4 9.2 169 281-451 4-218 (402)
52 COG4555 NatA ABC-type Na+ tran 99.8 4.2E-21 9.1E-26 182.6 2.3 167 282-450 3-211 (245)
53 COG1117 PstB ABC-type phosphat 99.8 8.8E-21 1.9E-25 182.1 4.1 171 281-454 8-230 (253)
54 PRK11247 ssuB aliphatic sulfon 99.8 4.3E-20 9.4E-25 188.4 9.5 172 280-452 12-214 (257)
55 COG4559 ABC-type hemin transpo 99.8 3.2E-20 6.9E-25 178.0 7.7 167 282-451 3-220 (259)
56 COG4175 ProV ABC-type proline/ 99.8 2.1E-20 4.6E-25 188.5 6.5 157 296-453 44-246 (386)
57 COG1137 YhbG ABC-type (unclass 99.8 3.7E-21 8E-26 182.8 0.8 168 281-450 5-217 (243)
58 cd03266 ABC_NatA_sodium_export 99.8 2.5E-20 5.5E-25 185.2 6.8 168 282-451 3-215 (218)
59 TIGR02315 ABC_phnC phosphonate 99.8 6.6E-20 1.4E-24 185.2 9.8 169 282-451 3-225 (243)
60 cd03225 ABC_cobalt_CbiO_domain 99.8 3E-20 6.5E-25 183.7 7.0 163 285-449 4-211 (211)
61 cd03218 ABC_YhbG The ABC trans 99.8 4E-20 8.7E-25 185.5 7.7 167 283-451 3-212 (232)
62 TIGR03522 GldA_ABC_ATP gliding 99.8 2.7E-20 5.9E-25 194.3 6.7 168 281-451 3-211 (301)
63 cd03219 ABC_Mj1267_LivG_branch 99.8 3.8E-20 8.2E-25 186.1 7.5 167 283-451 3-222 (236)
64 cd03258 ABC_MetN_methionine_tr 99.8 4.7E-20 1E-24 185.2 8.1 169 282-451 3-220 (233)
65 PRK13637 cbiO cobalt transport 99.8 5.6E-20 1.2E-24 190.6 8.7 170 281-451 3-224 (287)
66 TIGR02673 FtsE cell division A 99.8 4.7E-20 1E-24 182.7 7.3 166 282-449 3-214 (214)
67 cd03269 ABC_putative_ATPase Th 99.8 3.8E-20 8.3E-25 182.9 6.5 167 283-451 3-207 (210)
68 cd03268 ABC_BcrA_bacitracin_re 99.8 4.2E-20 9.1E-25 182.4 6.5 167 283-451 3-205 (208)
69 TIGR02211 LolD_lipo_ex lipopro 99.8 1.2E-19 2.5E-24 180.8 9.4 169 282-451 3-220 (221)
70 cd03298 ABC_ThiQ_thiamine_tran 99.8 1.2E-19 2.7E-24 179.4 9.5 166 283-451 3-208 (211)
71 cd03256 ABC_PhnC_transporter A 99.8 6.4E-20 1.4E-24 185.0 7.5 168 283-451 3-224 (241)
72 PRK10908 cell division protein 99.8 7.8E-20 1.7E-24 182.3 7.9 168 282-451 3-216 (222)
73 PRK13647 cbiO cobalt transport 99.8 7.1E-20 1.5E-24 188.6 7.7 169 281-451 5-217 (274)
74 cd03295 ABC_OpuCA_Osmoprotecti 99.8 7.3E-20 1.6E-24 185.0 7.6 168 283-451 3-215 (242)
75 COG3840 ThiQ ABC-type thiamine 99.8 5.7E-20 1.2E-24 172.3 6.0 152 301-452 19-210 (231)
76 PRK13650 cbiO cobalt transport 99.8 2.1E-19 4.6E-24 185.6 10.8 170 281-451 5-219 (279)
77 cd03262 ABC_HisP_GlnQ_permease 99.8 7.9E-20 1.7E-24 180.9 7.3 166 283-450 3-213 (213)
78 PRK11248 tauB taurine transpor 99.8 1.2E-19 2.6E-24 185.0 8.8 169 282-451 3-210 (255)
79 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 1.6E-19 3.4E-24 181.9 9.4 169 282-451 3-211 (236)
80 cd03264 ABC_drug_resistance_li 99.8 5.7E-20 1.2E-24 181.8 6.0 166 283-451 3-208 (211)
81 PRK11264 putative amino-acid A 99.8 1E-19 2.2E-24 184.7 7.7 169 281-451 4-223 (250)
82 PRK11831 putative ABC transpor 99.8 1.1E-19 2.4E-24 186.6 8.0 170 281-451 8-223 (269)
83 COG1123 ATPase components of v 99.8 2.1E-19 4.5E-24 195.9 10.4 170 283-453 283-511 (539)
84 cd03292 ABC_FtsE_transporter F 99.8 7.8E-20 1.7E-24 181.1 6.4 166 283-450 3-214 (214)
85 PRK14250 phosphate ABC transpo 99.8 1.8E-19 4E-24 182.0 9.2 171 281-452 4-212 (241)
86 PRK11308 dppF dipeptide transp 99.8 2.8E-19 6E-24 188.6 10.7 159 293-452 28-235 (327)
87 cd03224 ABC_TM1139_LivF_branch 99.8 9.3E-20 2E-24 181.5 6.7 167 283-451 3-211 (222)
88 PRK13634 cbiO cobalt transport 99.8 1.3E-19 2.7E-24 188.3 7.8 170 281-451 3-225 (290)
89 TIGR02142 modC_ABC molybdenum 99.8 1.4E-19 2.9E-24 193.1 8.3 165 285-452 4-212 (354)
90 PRK13651 cobalt transporter AT 99.8 1.6E-19 3.6E-24 188.6 8.6 169 281-451 3-244 (305)
91 PRK11629 lolD lipoprotein tran 99.8 4.2E-19 9.1E-24 178.4 11.2 170 281-451 6-224 (233)
92 cd01858 NGP_1 NGP-1. Autoanti 99.8 5.7E-19 1.2E-23 166.7 11.4 151 190-378 2-157 (157)
93 PRK10253 iron-enterobactin tra 99.8 2E-19 4.3E-24 184.4 8.9 172 279-451 6-223 (265)
94 PRK11300 livG leucine/isoleuci 99.8 1.4E-19 3.1E-24 184.2 7.6 170 281-451 6-233 (255)
95 PRK15079 oligopeptide ABC tran 99.8 1.4E-19 3E-24 191.1 7.7 159 293-452 34-242 (331)
96 PRK11144 modC molybdate transp 99.8 2E-19 4.2E-24 191.7 8.8 166 285-453 5-210 (352)
97 cd03294 ABC_Pro_Gly_Bertaine T 99.8 8.5E-20 1.8E-24 187.5 5.8 167 284-451 28-240 (269)
98 PRK10575 iron-hydroxamate tran 99.8 1.8E-19 4E-24 184.6 8.3 170 281-451 12-227 (265)
99 COG4604 CeuD ABC-type enteroch 99.8 4.2E-20 9E-25 175.2 3.2 170 281-452 2-216 (252)
100 cd03257 ABC_NikE_OppD_transpor 99.8 2.3E-19 4.9E-24 179.4 8.6 169 282-451 3-225 (228)
101 cd03263 ABC_subfamily_A The AB 99.8 1.1E-19 2.3E-24 180.9 6.3 166 283-451 3-211 (220)
102 PRK13635 cbiO cobalt transport 99.8 5.5E-19 1.2E-23 182.5 11.8 170 281-451 6-219 (279)
103 PRK10070 glycine betaine trans 99.8 1.8E-19 4E-24 194.0 8.3 165 286-451 34-244 (400)
104 cd03235 ABC_Metallic_Cations A 99.8 1.2E-19 2.7E-24 179.6 6.5 164 285-450 4-210 (213)
105 PRK10895 lipopolysaccharide AB 99.8 2.1E-19 4.5E-24 181.5 8.2 169 281-451 4-216 (241)
106 PRK13644 cbiO cobalt transport 99.8 5.2E-19 1.1E-23 182.2 11.0 168 282-451 3-214 (274)
107 PRK13652 cbiO cobalt transport 99.8 2.1E-19 4.6E-24 185.3 8.1 170 281-451 4-217 (277)
108 PRK09493 glnQ glutamine ABC tr 99.8 1.9E-19 4E-24 181.7 7.5 168 282-451 3-215 (240)
109 TIGR03410 urea_trans_UrtE urea 99.8 1.4E-19 3.1E-24 181.3 6.6 168 283-451 3-211 (230)
110 PRK10584 putative ABC transpor 99.8 7.2E-19 1.6E-23 176.0 11.4 170 281-451 7-225 (228)
111 TIGR03415 ABC_choXWV_ATP choli 99.8 1.3E-19 2.9E-24 193.8 6.3 164 287-451 31-244 (382)
112 PRK13638 cbiO cobalt transport 99.8 2.2E-19 4.8E-24 184.6 7.7 168 282-451 3-215 (271)
113 PRK13641 cbiO cobalt transport 99.8 2.3E-19 5E-24 186.0 7.9 169 281-451 3-224 (287)
114 PRK13632 cbiO cobalt transport 99.8 4E-19 8.8E-24 182.7 9.4 170 281-451 8-221 (271)
115 PRK13646 cbiO cobalt transport 99.8 2.6E-19 5.6E-24 185.6 7.9 170 281-451 3-225 (286)
116 TIGR01277 thiQ thiamine ABC tr 99.8 3.1E-19 6.8E-24 176.9 8.2 166 284-452 4-209 (213)
117 PRK11231 fecE iron-dicitrate t 99.8 2.5E-19 5.4E-24 182.6 7.5 169 281-451 3-217 (255)
118 TIGR03411 urea_trans_UrtD urea 99.8 2.8E-19 6.1E-24 180.6 7.8 168 281-451 3-221 (242)
119 PRK13548 hmuV hemin importer A 99.8 4.6E-19 9.9E-24 181.0 9.3 170 281-451 3-220 (258)
120 PRK13636 cbiO cobalt transport 99.8 3.2E-19 7E-24 184.6 8.1 170 281-451 6-221 (283)
121 COG4525 TauB ABC-type taurine 99.8 2.4E-19 5.2E-24 169.8 6.3 157 293-450 18-213 (259)
122 TIGR03740 galliderm_ABC gallid 99.8 2.7E-19 5.8E-24 178.6 6.9 168 283-452 3-204 (223)
123 PRK11022 dppD dipeptide transp 99.8 3.3E-19 7.1E-24 188.0 7.7 170 282-452 5-234 (326)
124 PRK15439 autoinducer 2 ABC tra 99.8 6.2E-19 1.3E-23 197.0 10.3 169 281-451 12-219 (510)
125 PRK11124 artP arginine transpo 99.8 8.1E-19 1.7E-23 177.3 10.0 169 281-451 3-220 (242)
126 PRK10762 D-ribose transporter 99.8 6.1E-19 1.3E-23 196.6 9.9 168 281-450 5-219 (501)
127 PRK15093 antimicrobial peptide 99.8 7.9E-19 1.7E-23 185.5 10.2 170 282-452 5-239 (330)
128 TIGR03005 ectoine_ehuA ectoine 99.8 3.6E-19 7.9E-24 181.0 7.4 169 283-452 3-227 (252)
129 cd03300 ABC_PotA_N PotA is an 99.8 4.8E-19 1E-23 177.9 8.1 169 283-452 3-211 (232)
130 PRK11614 livF leucine/isoleuci 99.8 3.5E-19 7.6E-24 179.4 7.0 169 281-451 6-216 (237)
131 PRK13640 cbiO cobalt transport 99.8 1.4E-18 3E-23 179.8 11.4 170 281-451 6-222 (282)
132 cd03260 ABC_PstB_phosphate_tra 99.8 4.2E-19 9.1E-24 177.6 7.3 166 283-451 3-219 (227)
133 PRK10619 histidine/lysine/argi 99.8 4.9E-19 1.1E-23 180.6 7.8 170 280-451 5-231 (257)
134 COG4152 ABC-type uncharacteriz 99.8 1E-19 2.2E-24 177.8 2.6 169 281-451 3-209 (300)
135 COG4161 ArtP ABC-type arginine 99.8 2.2E-19 4.8E-24 165.1 4.5 171 281-453 3-222 (242)
136 PRK10771 thiQ thiamine transpo 99.8 1.1E-18 2.3E-23 175.3 9.8 167 282-451 3-209 (232)
137 TIGR03873 F420-0_ABC_ATP propo 99.8 1.2E-18 2.6E-23 177.6 10.2 168 282-451 3-216 (256)
138 PRK13645 cbiO cobalt transport 99.8 6.4E-19 1.4E-23 182.9 8.2 172 279-451 5-230 (289)
139 PRK09473 oppD oligopeptide tra 99.8 1.3E-18 2.8E-23 183.8 10.5 170 282-452 14-242 (330)
140 PRK10247 putative ABC transpor 99.8 7.6E-19 1.6E-23 175.7 8.3 170 281-451 8-218 (225)
141 TIGR00972 3a0107s01c2 phosphat 99.8 7.5E-19 1.6E-23 178.1 8.4 166 282-451 3-222 (247)
142 PRK13633 cobalt transporter AT 99.8 1.2E-18 2.6E-23 180.1 9.9 170 281-451 5-223 (280)
143 cd03297 ABC_ModC_molybdenum_tr 99.8 6.7E-19 1.4E-23 174.6 7.8 164 284-451 4-211 (214)
144 PRK13648 cbiO cobalt transport 99.8 1.4E-18 2.9E-23 178.6 10.2 171 280-451 7-221 (269)
145 COG1123 ATPase components of v 99.8 1.3E-18 2.8E-23 189.8 10.4 165 293-458 22-244 (539)
146 PRK09700 D-allose transporter 99.8 8.6E-19 1.9E-23 195.9 9.1 168 281-450 6-223 (510)
147 PRK13549 xylose transporter AT 99.8 1E-18 2.2E-23 195.1 9.6 168 281-450 6-221 (506)
148 PRK13643 cbiO cobalt transport 99.8 8E-19 1.7E-23 182.1 8.2 168 282-451 3-223 (288)
149 PRK15112 antimicrobial peptide 99.8 7.9E-19 1.7E-23 180.2 8.0 170 281-451 5-229 (267)
150 TIGR02982 heterocyst_DevA ABC 99.8 8.8E-19 1.9E-23 174.6 7.7 168 282-450 3-219 (220)
151 TIGR00968 3a0106s01 sulfate AB 99.8 1E-18 2.3E-23 176.1 8.2 169 283-452 3-211 (237)
152 PRK09984 phosphonate/organopho 99.8 9.7E-19 2.1E-23 178.9 7.9 170 281-451 5-232 (262)
153 COG4619 ABC-type uncharacteriz 99.8 4.6E-19 1E-23 164.1 4.5 162 291-453 14-215 (223)
154 PRK11701 phnK phosphonate C-P 99.8 3.4E-18 7.4E-23 174.5 11.4 171 281-452 7-232 (258)
155 PRK13639 cbiO cobalt transport 99.8 1E-18 2.2E-23 180.1 7.5 168 282-451 3-216 (275)
156 PRK13631 cbiO cobalt transport 99.8 1.3E-18 2.9E-23 182.9 8.5 169 281-451 22-255 (320)
157 PRK11288 araG L-arabinose tran 99.8 1.3E-18 2.8E-23 194.0 8.9 169 281-451 5-219 (501)
158 TIGR01978 sufC FeS assembly AT 99.8 1.7E-18 3.7E-23 174.8 8.9 167 283-451 3-224 (243)
159 cd03267 ABC_NatA_like Similar 99.8 6.6E-19 1.4E-23 177.5 5.9 162 289-451 30-233 (236)
160 PRK13649 cbiO cobalt transport 99.8 1.2E-18 2.6E-23 180.0 7.8 169 281-451 3-224 (280)
161 TIGR03269 met_CoM_red_A2 methy 99.8 1.1E-18 2.4E-23 195.5 8.1 168 283-451 3-248 (520)
162 PRK13642 cbiO cobalt transport 99.8 3.5E-18 7.5E-23 176.3 11.2 170 281-451 5-219 (277)
163 PRK14247 phosphate ABC transpo 99.8 1.6E-18 3.4E-23 176.0 8.5 168 281-451 4-224 (250)
164 PRK10261 glutathione transport 99.7 1.2E-18 2.6E-23 198.8 8.3 170 281-451 13-248 (623)
165 TIGR02769 nickel_nikE nickel i 99.7 1.5E-18 3.2E-23 178.0 7.9 169 282-451 4-230 (265)
166 PRK10938 putative molybdenum t 99.7 1.8E-18 4E-23 192.3 9.3 168 281-450 4-213 (490)
167 cd03299 ABC_ModC_like Archeal 99.7 1.4E-18 3.1E-23 174.9 7.5 167 283-451 3-209 (235)
168 cd03245 ABCC_bacteriocin_expor 99.7 5.2E-18 1.1E-22 168.8 10.7 168 281-451 3-217 (220)
169 cd03231 ABC_CcmA_heme_exporter 99.7 4.3E-18 9.4E-23 167.3 9.9 150 283-434 3-180 (201)
170 TIGR01189 ccmA heme ABC export 99.7 3.9E-18 8.4E-23 167.2 9.5 153 283-437 3-185 (198)
171 PRK13543 cytochrome c biogenes 99.7 3.8E-18 8.2E-23 169.4 9.4 164 281-446 12-211 (214)
172 cd03214 ABC_Iron-Siderophores_ 99.7 1.8E-18 3.9E-23 167.1 6.8 156 285-451 4-177 (180)
173 PRK10261 glutathione transport 99.7 2.2E-18 4.8E-23 196.7 8.4 170 281-451 314-543 (623)
174 PRK13547 hmuV hemin importer A 99.7 3.4E-18 7.4E-23 175.9 8.9 169 282-451 3-234 (272)
175 PRK13538 cytochrome c biogenes 99.7 4E-18 8.7E-23 167.9 9.0 152 282-435 3-185 (204)
176 PRK10982 galactose/methyl gala 99.7 2.2E-18 4.7E-23 191.7 8.0 165 285-451 3-213 (491)
177 PRK10418 nikD nickel transport 99.7 7.5E-18 1.6E-22 171.6 11.2 171 280-452 4-221 (254)
178 PRK14242 phosphate transporter 99.7 2.7E-18 5.8E-23 174.7 7.9 170 280-452 6-228 (253)
179 PRK14268 phosphate ABC transpo 99.7 2.5E-18 5.4E-23 175.5 7.7 168 280-451 12-232 (258)
180 PRK14267 phosphate ABC transpo 99.7 3E-18 6.6E-23 174.3 8.2 169 281-452 5-228 (253)
181 cd03252 ABCC_Hemolysin The ABC 99.7 9.7E-18 2.1E-22 168.8 11.6 166 283-451 3-215 (237)
182 COG0444 DppD ABC-type dipeptid 99.7 4.7E-18 1E-22 173.7 9.3 161 291-452 16-234 (316)
183 TIGR03608 L_ocin_972_ABC putat 99.7 1.8E-18 3.8E-23 170.4 6.0 149 285-435 3-190 (206)
184 COG2274 SunT ABC-type bacterio 99.7 6.1E-18 1.3E-22 193.0 11.2 171 279-452 470-687 (709)
185 COG3845 ABC-type uncharacteriz 99.7 3.2E-18 7E-23 182.2 8.3 169 280-450 4-218 (501)
186 cd03230 ABC_DR_subfamily_A Thi 99.7 4.2E-18 9.1E-23 163.5 8.4 139 284-450 4-173 (173)
187 TIGR02633 xylG D-xylose ABC tr 99.7 3.9E-18 8.3E-23 190.2 9.2 167 282-450 3-219 (500)
188 PRK09544 znuC high-affinity zi 99.7 3.9E-18 8.5E-23 173.5 8.4 168 281-450 5-198 (251)
189 TIGR02323 CP_lyasePhnK phospho 99.7 4.3E-18 9.2E-23 173.2 8.6 170 281-451 4-228 (253)
190 cd03233 ABC_PDR_domain1 The pl 99.7 4.3E-18 9.4E-23 167.5 8.3 156 282-451 5-199 (202)
191 COG1160 Predicted GTPases [Gen 99.7 2.3E-17 5.1E-22 175.0 14.3 183 159-382 37-240 (444)
192 cd03251 ABCC_MsbA MsbA is an e 99.7 6.4E-18 1.4E-22 169.7 9.6 166 283-451 3-215 (234)
193 PRK10744 pstB phosphate transp 99.7 4E-18 8.7E-23 174.2 8.1 170 280-452 13-235 (260)
194 PRK14269 phosphate ABC transpo 99.7 4.5E-18 9.8E-23 172.4 8.3 169 281-452 3-221 (246)
195 cd03254 ABCC_Glucan_exporter_l 99.7 1.4E-17 3.1E-22 166.7 11.8 169 280-451 2-216 (229)
196 COG1129 MglA ABC-type sugar tr 99.7 4.9E-18 1.1E-22 184.0 9.0 168 281-450 9-223 (500)
197 TIGR01184 ntrCD nitrate transp 99.7 2.9E-18 6.3E-23 172.1 6.7 155 297-452 2-195 (230)
198 PRK14273 phosphate ABC transpo 99.7 4.4E-18 9.5E-23 173.2 7.8 168 281-451 8-228 (254)
199 PRK14235 phosphate transporter 99.7 4.3E-18 9.4E-23 174.7 7.8 170 280-452 19-242 (267)
200 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 1.6E-18 3.4E-23 173.4 4.4 166 284-451 26-221 (224)
201 cd03229 ABC_Class3 This class 99.7 8.5E-18 1.9E-22 162.1 9.3 142 283-449 3-178 (178)
202 PRK14248 phosphate ABC transpo 99.7 5.4E-18 1.2E-22 174.0 8.3 169 281-452 22-243 (268)
203 TIGR03269 met_CoM_red_A2 methy 99.7 3.5E-18 7.6E-23 191.4 7.4 170 281-451 280-507 (520)
204 cd03246 ABCC_Protease_Secretio 99.7 1.9E-17 4E-22 159.0 11.3 139 283-450 3-173 (173)
205 PRK13540 cytochrome c biogenes 99.7 1.3E-17 2.9E-22 163.7 10.1 152 282-435 3-183 (200)
206 PRK14256 phosphate ABC transpo 99.7 9.1E-18 2E-22 170.7 9.2 169 281-452 5-227 (252)
207 cd03250 ABCC_MRP_domain1 Domai 99.7 1.8E-17 3.9E-22 163.2 11.0 164 283-449 3-204 (204)
208 PRK15056 manganese/iron transp 99.7 1.2E-17 2.6E-22 171.9 10.1 168 281-451 7-220 (272)
209 cd03289 ABCC_CFTR2 The CFTR su 99.7 1.3E-17 2.8E-22 171.7 10.1 170 280-453 2-217 (275)
210 cd03369 ABCC_NFT1 Domain 2 of 99.7 1.9E-17 4.2E-22 163.3 10.7 165 280-451 6-202 (207)
211 TIGR02324 CP_lyasePhnL phospho 99.7 8.5E-18 1.8E-22 167.8 8.0 152 282-435 3-205 (224)
212 PRK10419 nikE nickel transport 99.7 7.5E-18 1.6E-22 173.1 7.8 170 281-451 4-231 (268)
213 cd03234 ABCG_White The White s 99.7 6.7E-18 1.4E-22 168.9 7.2 158 292-451 19-223 (226)
214 KOG0058 Peptide exporter, ABC 99.7 6.7E-18 1.5E-22 186.9 7.8 179 279-460 464-693 (716)
215 PRK09700 D-allose transporter 99.7 8.8E-18 1.9E-22 187.8 8.9 167 281-451 266-488 (510)
216 PRK14249 phosphate ABC transpo 99.7 1.2E-17 2.5E-22 169.9 9.0 169 281-452 5-226 (251)
217 PRK14270 phosphate ABC transpo 99.7 1E-17 2.2E-22 170.2 8.4 169 281-452 5-226 (251)
218 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 1.3E-17 2.9E-22 167.9 9.1 166 283-451 3-216 (238)
219 TIGR02770 nickel_nikD nickel i 99.7 5.5E-18 1.2E-22 170.0 6.1 156 295-451 1-205 (230)
220 cd03248 ABCC_TAP TAP, the Tran 99.7 1.5E-17 3.2E-22 166.3 9.2 168 280-450 11-226 (226)
221 PRK14245 phosphate ABC transpo 99.7 1.1E-17 2.3E-22 170.0 8.2 168 281-451 4-224 (250)
222 TIGR01166 cbiO cobalt transpor 99.7 1.1E-17 2.4E-22 162.8 7.8 145 291-437 3-185 (190)
223 PRK14241 phosphate transporter 99.7 9.1E-18 2E-22 171.3 7.5 169 280-451 4-232 (258)
224 PRK11819 putative ABC transpor 99.7 1.1E-17 2.4E-22 188.7 8.8 166 281-451 7-239 (556)
225 cd03216 ABC_Carb_Monos_I This 99.7 2E-17 4.3E-22 157.4 9.1 142 283-451 3-161 (163)
226 TIGR01187 potA spermidine/putr 99.7 4.3E-18 9.2E-23 179.6 4.9 142 311-452 1-181 (325)
227 PRK14251 phosphate ABC transpo 99.7 1.1E-17 2.4E-22 169.9 7.8 169 281-452 5-226 (251)
228 PRK14237 phosphate transporter 99.7 1.4E-17 2.9E-22 171.0 8.3 170 280-452 20-242 (267)
229 COG4608 AppF ABC-type oligopep 99.7 1.7E-17 3.7E-22 166.2 8.7 145 294-452 27-190 (268)
230 TIGR01257 rim_protein retinal- 99.7 1E-17 2.2E-22 207.0 8.6 181 280-462 1937-2162(2272)
231 PRK14244 phosphate ABC transpo 99.7 1.4E-17 3E-22 169.3 8.0 167 283-452 8-228 (251)
232 PRK13549 xylose transporter AT 99.7 1.1E-17 2.5E-22 186.7 8.0 169 281-451 260-484 (506)
233 TIGR01257 rim_protein retinal- 99.7 1.2E-17 2.6E-22 206.4 8.8 181 280-463 928-1153(2272)
234 PRK15134 microcin C ABC transp 99.7 1E-17 2.2E-22 188.0 7.5 170 281-451 6-236 (529)
235 cd03223 ABCD_peroxisomal_ALDP 99.7 3.5E-17 7.6E-22 156.1 10.1 141 283-448 3-163 (166)
236 PRK13539 cytochrome c biogenes 99.7 2.5E-17 5.3E-22 162.7 9.3 154 281-436 3-184 (207)
237 cd03244 ABCC_MRP_domain2 Domai 99.7 2.7E-17 5.8E-22 163.8 9.5 168 281-451 3-216 (221)
238 PRK14259 phosphate ABC transpo 99.7 1.5E-17 3.3E-22 170.8 7.9 166 280-448 13-229 (269)
239 cd03253 ABCC_ATM1_transporter 99.7 2.3E-17 4.9E-22 166.0 9.0 166 283-451 3-214 (236)
240 PRK14274 phosphate ABC transpo 99.7 1.8E-17 3.8E-22 169.3 8.2 168 281-451 13-233 (259)
241 PRK11174 cysteine/glutathione 99.7 5.4E-17 1.2E-21 184.5 13.0 168 280-451 349-562 (588)
242 PRK15064 ABC transporter ATP-b 99.7 1.8E-17 4E-22 186.0 9.0 165 281-450 2-230 (530)
243 PRK14236 phosphate transporter 99.7 1.9E-17 4.1E-22 170.4 8.3 169 281-452 26-247 (272)
244 PRK14239 phosphate transporter 99.7 1.7E-17 3.7E-22 168.5 7.7 169 281-452 6-227 (252)
245 PRK14257 phosphate ABC transpo 99.7 2E-17 4.4E-22 174.5 8.5 172 280-454 80-306 (329)
246 PRK14240 phosphate transporter 99.7 2.3E-17 5.1E-22 167.5 8.6 170 280-452 3-225 (250)
247 cd03215 ABC_Carb_Monos_II This 99.7 1.6E-17 3.4E-22 160.8 7.0 142 281-450 5-182 (182)
248 cd03237 ABC_RNaseL_inhibitor_d 99.7 1.2E-17 2.6E-22 169.4 6.4 146 303-448 21-192 (246)
249 PRK14262 phosphate ABC transpo 99.7 1.8E-17 3.8E-22 168.3 7.7 167 281-451 4-224 (250)
250 cd03213 ABCG_EPDR ABCG transpo 99.7 2E-17 4.2E-22 161.9 7.7 150 281-451 4-191 (194)
251 cd03217 ABC_FeS_Assembly ABC-t 99.7 3E-17 6.5E-22 161.3 8.9 147 283-451 3-184 (200)
252 TIGR02633 xylG D-xylose ABC tr 99.7 2.1E-17 4.6E-22 184.3 8.7 169 281-451 258-482 (500)
253 PRK14275 phosphate ABC transpo 99.7 1.6E-17 3.4E-22 172.3 7.1 169 281-452 40-261 (286)
254 PRK14271 phosphate ABC transpo 99.7 2.1E-17 4.6E-22 170.4 7.9 169 281-452 22-242 (276)
255 PRK14253 phosphate ABC transpo 99.7 1.7E-17 3.7E-22 168.4 7.0 169 281-452 4-224 (249)
256 PRK14272 phosphate ABC transpo 99.7 2.3E-17 5E-22 167.6 7.9 169 281-452 5-227 (252)
257 cd03247 ABCC_cytochrome_bd The 99.7 6.4E-17 1.4E-21 155.9 10.6 142 283-451 3-175 (178)
258 CHL00131 ycf16 sulfate ABC tra 99.7 3.8E-17 8.3E-22 166.0 9.5 169 281-451 8-231 (252)
259 PRK15134 microcin C ABC transp 99.7 1.5E-17 3.3E-22 186.7 7.1 169 281-451 276-505 (529)
260 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 4.9E-17 1.1E-21 188.1 11.4 168 280-452 451-664 (686)
261 PRK14261 phosphate ABC transpo 99.7 3.7E-17 8.1E-22 166.3 9.2 168 281-451 7-227 (253)
262 cd03290 ABCC_SUR1_N The SUR do 99.7 3.5E-17 7.5E-22 162.8 8.8 164 283-448 3-217 (218)
263 PRK14246 phosphate ABC transpo 99.7 2.9E-17 6.2E-22 167.7 8.2 169 281-452 11-232 (257)
264 PRK14254 phosphate ABC transpo 99.7 2.5E-17 5.3E-22 170.7 7.6 169 281-452 40-260 (285)
265 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 3.4E-17 7.3E-22 184.7 9.1 165 281-450 5-236 (552)
266 PRK14258 phosphate ABC transpo 99.7 4.4E-17 9.5E-22 166.7 9.1 171 280-451 7-235 (261)
267 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 1E-16 2.2E-21 186.0 13.3 168 280-452 477-691 (710)
268 PRK14238 phosphate transporter 99.7 2.5E-17 5.5E-22 169.4 7.1 169 281-452 25-246 (271)
269 COG1119 ModF ABC-type molybden 99.7 5.9E-17 1.3E-21 159.4 9.2 169 281-450 32-251 (257)
270 PRK13409 putative ATPase RIL; 99.7 3.1E-17 6.8E-22 185.4 8.0 164 281-447 341-529 (590)
271 PRK12289 GTPase RsgA; Reviewed 99.7 2.2E-16 4.9E-21 167.2 13.6 188 152-382 35-238 (352)
272 PRK10790 putative multidrug tr 99.7 1.5E-16 3.3E-21 181.0 13.0 170 280-452 340-554 (592)
273 cd03288 ABCC_SUR2 The SUR doma 99.7 1.1E-16 2.3E-21 163.4 10.6 170 280-452 19-234 (257)
274 PRK11147 ABC transporter ATPas 99.7 3.6E-17 7.9E-22 187.2 7.8 174 281-459 320-525 (635)
275 cd03228 ABCC_MRP_Like The MRP 99.7 7.6E-17 1.6E-21 154.4 8.4 139 283-449 3-171 (171)
276 cd01849 YlqF_related_GTPase Yl 99.7 3.1E-16 6.7E-21 147.8 12.3 141 198-378 1-155 (155)
277 PRK15064 ABC transporter ATP-b 99.7 7.9E-17 1.7E-21 180.9 9.7 166 281-451 320-514 (530)
278 PRK14265 phosphate ABC transpo 99.7 5.7E-17 1.2E-21 167.1 7.8 164 280-446 20-234 (274)
279 COG1132 MdlB ABC-type multidru 99.7 2.2E-16 4.7E-21 178.8 13.2 171 279-452 327-543 (567)
280 PRK14255 phosphate ABC transpo 99.7 6.6E-17 1.4E-21 164.4 8.0 169 281-452 6-227 (252)
281 PRK10938 putative molybdenum t 99.7 6.1E-17 1.3E-21 180.2 8.3 172 281-453 261-484 (490)
282 PRK14252 phosphate ABC transpo 99.7 1.4E-16 3E-21 163.4 10.2 171 279-452 15-240 (265)
283 PRK14243 phosphate transporter 99.7 6.4E-17 1.4E-21 165.8 7.6 163 281-446 11-224 (264)
284 COG1101 PhnK ABC-type uncharac 99.7 2.1E-17 4.5E-22 159.1 3.7 157 293-450 19-227 (263)
285 TIGR03375 type_I_sec_LssB type 99.7 1.3E-16 2.8E-21 184.8 10.8 170 280-452 463-679 (694)
286 PRK11819 putative ABC transpor 99.7 7.5E-17 1.6E-21 182.0 8.6 166 281-451 325-522 (556)
287 TIGR03719 ABC_ABC_ChvD ATP-bin 99.7 8.2E-17 1.8E-21 181.6 8.8 166 281-451 323-520 (552)
288 PRK09580 sufC cysteine desulfu 99.7 1.2E-16 2.5E-21 162.0 9.1 169 281-451 2-225 (248)
289 COG4988 CydD ABC-type transpor 99.7 1.5E-16 3.2E-21 173.2 10.3 169 281-452 321-534 (559)
290 PRK13541 cytochrome c biogenes 99.7 1.4E-16 3E-21 155.8 9.2 151 282-435 3-179 (195)
291 TIGR01842 type_I_sec_PrtD type 99.7 1.7E-16 3.6E-21 178.9 11.2 171 280-452 316-533 (544)
292 KOG1249 Predicted GTPases [Gen 99.7 8.7E-17 1.9E-21 171.8 8.3 229 72-364 27-267 (572)
293 cd03232 ABC_PDR_domain2 The pl 99.7 7.1E-17 1.5E-21 157.6 7.0 150 281-451 4-189 (192)
294 PRK11288 araG L-arabinose tran 99.7 7.3E-17 1.6E-21 180.0 8.1 156 294-451 267-475 (501)
295 PRK14266 phosphate ABC transpo 99.7 9.6E-17 2.1E-21 162.9 8.3 168 281-451 4-224 (250)
296 KOG0057 Mitochondrial Fe/S clu 99.7 1.1E-16 2.4E-21 171.9 8.9 171 279-453 350-566 (591)
297 PRK03695 vitamin B12-transport 99.7 5.8E-17 1.2E-21 164.6 6.4 154 295-451 11-212 (248)
298 COG4167 SapF ABC-type antimicr 99.7 9.4E-17 2E-21 150.7 7.1 154 301-454 33-232 (267)
299 PRK11176 lipid transporter ATP 99.7 9.6E-17 2.1E-21 182.2 8.7 170 280-452 341-558 (582)
300 cd03222 ABC_RNaseL_inhibitor T 99.7 1.4E-16 3E-21 153.4 8.5 128 285-449 5-149 (177)
301 TIGR01193 bacteriocin_ABC ABC- 99.7 1.6E-16 3.5E-21 184.3 10.7 169 280-452 473-688 (708)
302 PRK13657 cyclic beta-1,2-gluca 99.7 3.2E-16 6.9E-21 178.2 12.8 170 280-452 334-549 (588)
303 PRK14260 phosphate ABC transpo 99.7 9.1E-17 2E-21 164.1 7.4 169 280-451 7-233 (259)
304 PLN03211 ABC transporter G-25; 99.7 7.8E-17 1.7E-21 184.4 7.6 163 286-450 74-285 (659)
305 PRK13546 teichoic acids export 99.7 7E-17 1.5E-21 165.5 6.2 156 293-451 37-222 (264)
306 PRK10636 putative ABC transpor 99.7 1E-16 2.2E-21 183.4 8.1 166 281-451 313-506 (638)
307 TIGR00958 3a01208 Conjugate Tr 99.7 3.9E-16 8.4E-21 181.0 13.0 168 280-452 478-693 (711)
308 PRK10762 D-ribose transporter 99.7 7.8E-17 1.7E-21 179.8 6.9 156 294-451 266-474 (501)
309 PRK11160 cysteine/glutathione 99.7 1.7E-16 3.7E-21 179.8 9.6 170 280-452 338-553 (574)
310 PRK14263 phosphate ABC transpo 99.7 1.5E-16 3.2E-21 162.8 8.2 167 282-451 10-235 (261)
311 PRK13545 tagH teichoic acids e 99.7 1.3E-16 2.8E-21 174.7 8.2 167 281-450 22-221 (549)
312 PRK10636 putative ABC transpor 99.7 1.3E-16 2.7E-21 182.6 8.4 166 281-451 2-225 (638)
313 cd04178 Nucleostemin_like Nucl 99.7 2E-16 4.4E-21 151.7 8.4 147 198-378 1-172 (172)
314 COG4172 ABC-type uncharacteriz 99.7 2.5E-16 5.5E-21 163.4 9.4 157 294-452 301-507 (534)
315 KOG0055 Multidrug/pheromone ex 99.7 2E-16 4.3E-21 184.4 9.6 179 279-460 349-578 (1228)
316 PRK14264 phosphate ABC transpo 99.7 1.6E-16 3.4E-21 166.3 7.9 168 281-451 46-279 (305)
317 PRK10522 multidrug transporter 99.7 4.8E-16 1E-20 175.2 12.5 171 280-452 322-529 (547)
318 TIGR01194 cyc_pep_trnsptr cycl 99.6 4.6E-16 1E-20 175.6 12.0 171 279-451 336-549 (555)
319 TIGR03596 GTPase_YlqF ribosome 99.6 6E-16 1.3E-20 159.6 11.7 153 186-381 11-176 (276)
320 PRK15177 Vi polysaccharide exp 99.6 7.6E-17 1.7E-21 160.0 4.7 155 295-453 2-184 (213)
321 TIGR02203 MsbA_lipidA lipid A 99.6 1.7E-16 3.7E-21 179.7 7.9 170 280-452 330-547 (571)
322 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 3.1E-16 6.8E-21 146.1 8.2 124 283-449 3-144 (144)
323 COG0488 Uup ATPase components 99.6 1.7E-16 3.7E-21 175.7 7.4 169 281-451 4-229 (530)
324 TIGR03771 anch_rpt_ABC anchore 99.6 1.6E-16 3.6E-21 158.7 6.5 146 304-451 3-191 (223)
325 PRK15439 autoinducer 2 ABC tra 99.6 2E-16 4.3E-21 176.9 7.7 155 295-451 278-482 (510)
326 TIGR01192 chvA glucan exporter 99.6 1E-15 2.2E-20 173.9 13.0 169 280-451 334-548 (585)
327 TIGR01846 type_I_sec_HlyB type 99.6 8.7E-16 1.9E-20 177.9 12.6 170 280-452 455-671 (694)
328 cd01857 HSR1_MMR1 HSR1/MMR1. 99.6 2.9E-15 6.3E-20 138.9 13.6 137 189-380 4-140 (141)
329 TIGR02857 CydD thiol reductant 99.6 9.3E-16 2E-20 172.2 12.1 162 280-444 320-528 (529)
330 TIGR02204 MsbA_rel ABC transpo 99.6 6.2E-16 1.3E-20 175.4 10.3 170 280-452 337-554 (576)
331 cd03291 ABCC_CFTR1 The CFTR su 99.6 1E-15 2.2E-20 158.2 10.9 166 280-451 39-237 (282)
332 PRK09563 rbgA GTPase YlqF; Rev 99.6 3E-15 6.6E-20 155.2 14.2 152 187-381 15-179 (287)
333 PRK10982 galactose/methyl gala 99.6 3.8E-16 8.2E-21 173.8 8.0 167 281-451 251-470 (491)
334 TIGR02868 CydC thiol reductant 99.6 7E-16 1.5E-20 173.2 10.1 153 280-435 334-525 (529)
335 PLN03130 ABC transporter C fam 99.6 1E-15 2.2E-20 190.0 12.1 170 280-452 1237-1452(1622)
336 PRK10789 putative multidrug tr 99.6 1.1E-15 2.4E-20 173.0 10.8 169 280-451 313-528 (569)
337 cd03236 ABC_RNaseL_inhibitor_d 99.6 4E-16 8.6E-21 159.1 6.3 160 285-447 5-214 (255)
338 PRK11147 ABC transporter ATPas 99.6 5.8E-16 1.3E-20 177.4 8.0 165 281-451 4-232 (635)
339 PLN03232 ABC transporter C fam 99.6 1.5E-15 3.2E-20 188.1 12.1 170 280-452 1234-1449(1495)
340 PLN03232 ABC transporter C fam 99.6 9E-16 2E-20 190.0 9.8 170 280-452 614-819 (1495)
341 PRK13409 putative ATPase RIL; 99.6 6E-16 1.3E-20 175.1 7.6 158 286-447 79-286 (590)
342 TIGR00955 3a01204 The Eye Pigm 99.6 5.2E-16 1.1E-20 177.1 7.0 159 291-451 36-246 (617)
343 PLN03073 ABC transporter F fam 99.6 9.1E-16 2E-20 176.8 8.9 166 281-451 509-703 (718)
344 COG1134 TagH ABC-type polysacc 99.6 3.9E-16 8.4E-21 153.8 4.9 159 289-450 36-225 (249)
345 COG4172 ABC-type uncharacteriz 99.6 1.2E-15 2.6E-20 158.4 8.3 163 289-452 19-238 (534)
346 COG4674 Uncharacterized ABC-ty 99.6 2.4E-16 5.2E-21 149.6 2.7 167 281-450 6-224 (249)
347 PTZ00265 multidrug resistance 99.6 2.7E-15 5.9E-20 184.6 12.6 170 280-450 1165-1440(1466)
348 COG4987 CydC ABC-type transpor 99.6 1.5E-15 3.2E-20 163.2 8.7 170 280-452 336-552 (573)
349 TIGR00957 MRP_assoc_pro multi 99.6 3E-15 6.4E-20 185.7 12.4 170 280-452 1284-1499(1522)
350 COG4618 ArpD ABC-type protease 99.6 7.6E-16 1.7E-20 164.1 6.1 166 292-459 348-561 (580)
351 PTZ00243 ABC transporter; Prov 99.6 2.5E-15 5.4E-20 186.2 11.5 170 280-452 1308-1524(1560)
352 PTZ00265 multidrug resistance 99.6 1.7E-15 3.6E-20 186.4 9.7 169 280-449 382-656 (1466)
353 TIGR00954 3a01203 Peroxysomal 99.6 1.8E-15 4E-20 173.7 9.1 162 280-446 451-652 (659)
354 cd03238 ABC_UvrA The excision 99.6 5.4E-15 1.2E-19 142.3 10.8 139 293-450 8-166 (176)
355 cd01856 YlqF YlqF. Proteins o 99.6 1E-14 2.3E-19 139.7 12.7 151 186-379 9-171 (171)
356 PRK10535 macrolide transporter 99.6 1.8E-15 4E-20 173.5 8.4 169 281-451 5-222 (648)
357 PLN03130 ABC transporter C fam 99.6 4.2E-15 9.1E-20 184.5 11.7 168 280-451 614-818 (1622)
358 TIGR01271 CFTR_protein cystic 99.6 5.7E-15 1.2E-19 182.7 11.3 170 280-453 1217-1432(1490)
359 COG4586 ABC-type uncharacteriz 99.6 1.1E-15 2.4E-20 151.9 3.5 156 295-451 39-236 (325)
360 KOG0055 Multidrug/pheromone ex 99.6 5.1E-15 1.1E-19 172.8 9.3 172 279-453 986-1205(1228)
361 TIGR00157 ribosome small subun 99.6 3.1E-14 6.7E-19 144.3 13.8 152 194-382 34-185 (245)
362 COG4107 PhnK ABC-type phosphon 99.6 1.9E-14 4.1E-19 134.3 11.1 169 283-452 9-232 (258)
363 TIGR00956 3a01205 Pleiotropic 99.5 9.9E-15 2.1E-19 179.3 10.7 167 282-450 761-982 (1394)
364 KOG0056 Heavy metal exporter H 99.5 2.2E-14 4.7E-19 151.6 11.5 182 279-462 536-765 (790)
365 cd01859 MJ1464 MJ1464. This f 99.5 4.6E-14 1E-18 132.8 12.7 146 192-378 8-156 (156)
366 KOG0054 Multidrug resistance-a 99.5 2.6E-14 5.7E-19 170.3 11.6 170 280-452 518-722 (1381)
367 cd00267 ABC_ATPase ABC (ATP-bi 99.5 2E-14 4.3E-19 135.6 8.5 137 285-449 4-157 (157)
368 PF00005 ABC_tran: ABC transpo 99.5 2.1E-15 4.6E-20 138.4 1.5 111 297-412 2-135 (137)
369 PLN03140 ABC transporter G fam 99.5 8.7E-15 1.9E-19 179.6 7.1 158 292-450 177-416 (1470)
370 COG4133 CcmA ABC-type transpor 99.5 8.8E-15 1.9E-19 138.5 5.5 140 289-429 11-181 (209)
371 TIGR00956 3a01205 Pleiotropic 99.5 5.6E-15 1.2E-19 181.5 5.2 158 292-450 73-289 (1394)
372 TIGR00957 MRP_assoc_pro multi 99.5 2.7E-14 5.8E-19 177.3 10.9 169 280-451 636-840 (1522)
373 PTZ00243 ABC transporter; Prov 99.5 3.2E-14 7E-19 176.4 10.3 158 291-451 671-860 (1560)
374 PLN03140 ABC transporter G fam 99.5 1.2E-14 2.6E-19 178.3 6.4 157 292-450 892-1099(1470)
375 KOG0061 Transporter, ABC super 99.5 1E-14 2.3E-19 165.5 5.3 158 291-450 41-249 (613)
376 cd01854 YjeQ_engC YjeQ/EngC. 99.5 2.3E-13 5.1E-18 141.1 14.6 151 194-381 76-226 (287)
377 PRK00098 GTPase RsgA; Reviewed 99.5 2.3E-13 5E-18 141.9 14.5 152 194-381 78-229 (298)
378 PLN03073 ABC transporter F fam 99.5 4.5E-14 9.7E-19 162.9 9.2 162 278-451 175-420 (718)
379 COG0396 sufC Cysteine desulfur 99.5 8.1E-14 1.7E-18 136.0 9.1 168 283-452 6-225 (251)
380 TIGR01271 CFTR_protein cystic 99.5 9.2E-14 2E-18 172.1 11.4 155 293-451 439-626 (1490)
381 KOG0054 Multidrug resistance-a 99.5 9.9E-14 2.1E-18 165.5 10.8 176 279-457 1137-1358(1381)
382 PRK12288 GTPase RsgA; Reviewed 99.5 1.9E-13 4E-18 145.0 11.8 153 195-382 119-271 (347)
383 COG1162 Predicted GTPases [Gen 99.5 3.1E-13 6.8E-18 138.0 12.8 161 196-393 79-239 (301)
384 COG4136 ABC-type uncharacteriz 99.5 2.5E-13 5.5E-18 124.0 10.3 150 283-433 5-189 (213)
385 KOG0059 Lipid exporter ABCA1 a 99.4 3.4E-14 7.3E-19 167.9 3.9 184 279-464 563-792 (885)
386 KOG2484 GTPase [General functi 99.4 4.2E-13 9.1E-18 139.5 11.4 154 188-380 138-309 (435)
387 COG0488 Uup ATPase components 99.4 1.7E-13 3.8E-18 152.0 6.5 167 281-453 322-516 (530)
388 cd03270 ABC_UvrA_I The excisio 99.4 1.5E-12 3.2E-17 130.6 10.1 157 293-451 8-223 (226)
389 TIGR03594 GTPase_EngA ribosome 99.4 1.2E-11 2.6E-16 135.4 17.9 158 182-380 64-232 (429)
390 PRK03003 GTP-binding protein D 99.4 1.2E-11 2.6E-16 137.0 17.1 158 182-380 103-271 (472)
391 COG4778 PhnL ABC-type phosphon 99.4 2.4E-13 5.2E-18 126.6 2.9 138 294-433 25-206 (235)
392 PRK00093 GTP-binding protein D 99.4 1.5E-11 3.4E-16 134.8 17.4 158 182-380 66-233 (435)
393 COG1245 Predicted ATPase, RNas 99.4 1.3E-12 2.7E-17 138.0 7.9 139 306-446 366-530 (591)
394 PRK01889 GTPase RsgA; Reviewed 99.3 7.3E-12 1.6E-16 133.7 12.1 148 194-380 110-259 (356)
395 COG5265 ATM1 ABC-type transpor 99.3 2.8E-12 6E-17 134.5 7.7 170 279-451 261-476 (497)
396 KOG1424 Predicted GTP-binding 99.3 1.2E-11 2.6E-16 132.3 12.5 156 187-381 165-372 (562)
397 PRK09518 bifunctional cytidyla 99.3 5.4E-11 1.2E-15 138.1 17.6 158 182-380 340-510 (712)
398 cd03278 ABC_SMC_barmotin Barmo 99.3 6.8E-12 1.5E-16 123.1 8.6 137 301-447 17-190 (197)
399 COG4178 ABC-type uncharacteriz 99.3 8.1E-12 1.8E-16 138.5 9.2 138 293-433 406-568 (604)
400 cd03274 ABC_SMC4_euk Eukaryoti 99.3 5.5E-12 1.2E-16 125.2 6.8 157 280-448 5-205 (212)
401 KOG2423 Nucleolar GTPase [Gene 99.3 9.7E-12 2.1E-16 128.7 8.5 152 190-381 207-365 (572)
402 COG4138 BtuD ABC-type cobalami 99.2 3.7E-12 7.9E-17 119.3 2.9 147 302-450 20-210 (248)
403 COG1129 MglA ABC-type sugar tr 99.2 1.7E-11 3.6E-16 133.6 7.8 157 293-451 272-480 (500)
404 cd03272 ABC_SMC3_euk Eukaryoti 99.2 5.9E-11 1.3E-15 119.9 9.8 63 382-446 153-234 (243)
405 cd03279 ABC_sbcCD SbcCD and ot 99.2 5.4E-11 1.2E-15 118.1 9.2 137 308-449 30-210 (213)
406 cd03273 ABC_SMC2_euk Eukaryoti 99.2 8.5E-11 1.8E-15 119.6 9.7 139 305-445 24-241 (251)
407 cd03240 ABC_Rad50 The catalyti 99.1 9E-11 1.9E-15 115.8 7.8 136 303-447 19-197 (204)
408 COG4615 PvdE ABC-type sideroph 99.1 2.3E-11 4.9E-16 126.6 3.4 168 279-450 321-526 (546)
409 KOG0065 Pleiotropic drug resis 99.1 1.1E-11 2.4E-16 145.3 0.9 141 291-433 802-984 (1391)
410 KOG0062 ATPase component of AB 99.1 1.3E-11 2.9E-16 132.1 0.9 166 279-451 79-274 (582)
411 KOG0066 eIF2-interacting prote 99.1 1E-10 2.2E-15 122.6 7.0 126 283-409 589-728 (807)
412 cd03271 ABC_UvrA_II The excisi 99.1 6E-10 1.3E-14 113.8 10.5 80 371-451 151-256 (261)
413 KOG0927 Predicted transporter 99.1 5.2E-11 1.1E-15 128.3 2.5 129 281-410 390-534 (614)
414 KOG0060 Long-chain acyl-CoA tr 99.1 8.4E-10 1.8E-14 120.0 11.3 145 288-433 443-621 (659)
415 KOG2355 Predicted ABC-type tra 99.1 1.1E-09 2.4E-14 105.3 10.9 170 280-452 13-228 (291)
416 KOG0064 Peroxisomal long-chain 99.0 4.6E-10 1E-14 120.4 5.2 139 294-433 496-663 (728)
417 KOG2485 Conserved ATP/GTP bind 99.0 1.5E-09 3.4E-14 110.3 8.2 159 188-381 38-209 (335)
418 COG1245 Predicted ATPase, RNas 99.0 4.5E-10 9.7E-15 119.0 4.4 128 305-433 98-267 (591)
419 cd03275 ABC_SMC1_euk Eukaryoti 99.0 3.6E-09 7.7E-14 107.5 10.8 140 307-447 23-233 (247)
420 KOG0927 Predicted transporter 98.9 5.4E-10 1.2E-14 120.6 4.8 163 279-450 74-297 (614)
421 COG3845 ABC-type uncharacteriz 98.9 1.1E-09 2.3E-14 117.7 6.1 165 284-451 263-482 (501)
422 cd03276 ABC_SMC6_euk Eukaryoti 98.9 8.9E-09 1.9E-13 101.1 9.8 120 302-427 17-162 (198)
423 COG2401 ABC-type ATPase fused 98.8 8.2E-09 1.8E-13 108.3 6.2 142 293-435 396-564 (593)
424 COG4170 SapD ABC-type antimicr 98.8 6E-09 1.3E-13 100.5 4.4 166 284-450 11-237 (330)
425 cd03280 ABC_MutS2 MutS2 homolo 98.7 8.6E-09 1.9E-13 101.3 4.5 130 301-451 21-169 (200)
426 PF03193 DUF258: Protein of un 98.7 8.6E-09 1.9E-13 97.3 2.5 99 264-382 3-101 (161)
427 cd03277 ABC_SMC5_euk Eukaryoti 98.6 1.4E-07 3E-12 93.8 10.2 69 381-449 120-211 (213)
428 PF10662 PduV-EutP: Ethanolami 98.6 3.9E-08 8.3E-13 90.9 5.7 124 151-299 13-141 (143)
429 KOG0065 Pleiotropic drug resis 98.6 7.3E-08 1.6E-12 113.9 8.3 157 293-450 128-340 (1391)
430 PF02421 FeoB_N: Ferrous iron 98.6 1.1E-07 2.4E-12 89.6 7.8 110 308-440 2-116 (156)
431 PRK00635 excinuclease ABC subu 98.6 9E-08 1.9E-12 118.2 8.6 75 371-446 791-885 (1809)
432 KOG0062 ATPase component of AB 98.6 5.3E-08 1.1E-12 105.0 4.8 172 280-452 362-559 (582)
433 KOG0063 RNAse L inhibitor, ABC 98.6 4.1E-08 8.8E-13 103.5 3.8 138 309-447 370-532 (592)
434 cd03239 ABC_SMC_head The struc 98.5 2.6E-07 5.6E-12 89.3 8.5 127 308-446 24-171 (178)
435 TIGR00630 uvra excinuclease AB 98.5 2E-07 4.3E-12 110.1 8.8 80 371-451 810-915 (924)
436 PRK00349 uvrA excinuclease ABC 98.5 2.9E-07 6.3E-12 108.9 10.0 80 371-451 812-917 (943)
437 COG1159 Era GTPase [General fu 98.4 1.2E-06 2.6E-11 89.3 9.2 104 178-302 67-170 (298)
438 COG1159 Era GTPase [General fu 98.2 8.9E-07 1.9E-11 90.3 2.7 62 306-382 6-68 (298)
439 cd03227 ABC_Class2 ABC-type Cl 98.2 2.6E-06 5.5E-11 80.9 5.4 112 308-446 23-154 (162)
440 COG0486 ThdF Predicted GTPase 98.1 4.1E-06 8.9E-11 90.2 5.2 60 308-382 219-279 (454)
441 cd03243 ABC_MutS_homologs The 98.0 3.3E-06 7.1E-11 83.1 3.6 103 308-433 31-145 (202)
442 PF01926 MMR_HSR1: 50S ribosom 98.0 3.8E-06 8.2E-11 74.7 3.6 58 308-380 1-59 (116)
443 TIGR02858 spore_III_AA stage I 98.0 9.4E-06 2E-10 83.5 6.5 30 308-337 113-142 (270)
444 COG1160 Predicted GTPases [Gen 98.0 1.9E-05 4E-10 85.1 8.6 94 191-301 255-348 (444)
445 TIGR00436 era GTP-binding prot 98.0 2E-05 4.4E-10 81.1 8.6 60 307-381 1-61 (270)
446 KOG0066 eIF2-interacting prote 98.0 1.2E-06 2.6E-11 92.6 -1.1 81 370-450 393-487 (807)
447 cd03241 ABC_RecN RecN ATPase i 97.9 7.1E-05 1.5E-09 77.4 11.6 62 386-449 169-249 (276)
448 PRK09866 hypothetical protein; 97.9 3.4E-05 7.3E-10 86.5 9.5 96 192-301 254-350 (741)
449 PRK00635 excinuclease ABC subu 97.9 1.4E-05 3E-10 99.3 7.2 74 371-445 1681-1774(1809)
450 COG0218 Predicted GTPase [Gene 97.9 1E-05 2.3E-10 78.4 4.3 57 308-380 26-82 (200)
451 COG0178 UvrA Excinuclease ATPa 97.9 7.8E-05 1.7E-09 84.8 11.1 72 373-445 806-897 (935)
452 KOG1191 Mitochondrial GTPase [ 97.8 2.9E-05 6.2E-10 83.8 6.9 100 308-427 270-376 (531)
453 TIGR00436 era GTP-binding prot 97.8 9.3E-05 2E-09 76.2 10.0 98 182-302 65-162 (270)
454 PF00009 GTP_EFTU: Elongation 97.8 3E-05 6.5E-10 75.2 5.7 96 190-301 87-184 (188)
455 COG1084 Predicted GTPase [Gene 97.8 2.5E-05 5.3E-10 80.7 5.2 86 308-411 170-257 (346)
456 TIGR02528 EutP ethanolamine ut 97.8 7.7E-05 1.7E-09 68.3 8.0 82 193-299 59-140 (142)
457 PRK13695 putative NTPase; Prov 97.8 3.9E-05 8.5E-10 73.5 5.7 133 308-450 2-153 (174)
458 cd03282 ABC_MSH4_euk MutS4 hom 97.7 4.8E-05 1E-09 75.2 6.0 96 294-411 17-116 (204)
459 smart00534 MUTSac ATPase domai 97.7 5.3E-05 1.1E-09 73.6 6.1 104 309-433 2-116 (185)
460 PRK12298 obgE GTPase CgtA; Rev 97.7 5.1E-05 1.1E-09 82.2 6.1 104 308-427 161-303 (390)
461 cd01852 AIG1 AIG1 (avrRpt2-ind 97.7 8.1E-05 1.8E-09 72.7 7.0 60 308-381 2-62 (196)
462 cd03285 ABC_MSH2_euk MutS2 hom 97.7 2.7E-05 5.9E-10 77.9 3.6 95 294-412 18-118 (222)
463 cd00820 PEPCK_HprK Phosphoenol 97.7 3.4E-05 7.5E-10 68.0 3.4 62 294-362 3-77 (107)
464 COG0370 FeoB Fe2+ transport sy 97.7 0.00013 2.9E-09 82.0 8.8 106 308-438 5-117 (653)
465 cd01884 EF_Tu EF-Tu subfamily. 97.6 0.00025 5.4E-09 69.6 9.6 91 189-293 81-172 (195)
466 PRK00089 era GTPase Era; Revie 97.6 0.00027 5.8E-09 73.5 10.0 99 182-301 70-168 (292)
467 PF02463 SMC_N: RecF/RecN/SMC 97.6 0.00024 5.3E-09 70.5 9.1 40 387-426 136-188 (220)
468 cd04104 p47_IIGP_like p47 (47- 97.6 0.00043 9.4E-09 67.8 10.2 28 308-335 3-30 (197)
469 PRK09554 feoB ferrous iron tra 97.6 0.00027 5.9E-09 82.8 10.2 115 308-441 5-124 (772)
470 COG4917 EutP Ethanolamine util 97.5 0.00013 2.7E-09 65.4 5.0 124 152-301 14-143 (148)
471 cd01853 Toc34_like Toc34-like 97.5 8.3E-05 1.8E-09 75.7 4.2 58 308-380 33-91 (249)
472 cd00881 GTP_translation_factor 97.5 0.00052 1.1E-08 65.4 9.5 94 192-301 81-184 (189)
473 PRK00089 era GTPase Era; Revie 97.5 8.7E-05 1.9E-09 77.2 4.2 60 306-380 5-65 (292)
474 PRK15494 era GTPase Era; Provi 97.5 0.00039 8.4E-09 74.1 9.0 98 182-302 117-214 (339)
475 cd03283 ABC_MutS-like MutS-lik 97.5 0.00018 3.9E-09 70.8 6.0 33 295-330 16-49 (199)
476 cd01894 EngA1 EngA1 subfamily. 97.5 0.00041 8.9E-09 63.9 7.9 88 186-299 66-153 (157)
477 cd04171 SelB SelB subfamily. 97.4 0.00057 1.2E-08 63.6 8.6 92 192-299 70-161 (164)
478 TIGR01069 mutS2 MutS2 family p 97.4 0.00021 4.7E-09 83.7 6.8 104 308-433 324-439 (771)
479 cd03242 ABC_RecF RecF is a rec 97.3 0.00092 2E-08 68.9 9.7 63 384-450 180-269 (270)
480 PRK00349 uvrA excinuclease ABC 97.3 0.0003 6.5E-09 83.7 6.9 81 370-451 470-575 (943)
481 cd01895 EngA2 EngA2 subfamily. 97.3 0.0013 2.8E-08 61.4 9.9 90 193-299 81-170 (174)
482 TIGR00630 uvra excinuclease AB 97.3 0.00037 8E-09 82.9 7.0 81 370-451 468-573 (924)
483 cd04164 trmE TrmE (MnmE, ThdF, 97.3 0.00024 5.3E-09 65.4 4.4 58 308-380 3-61 (157)
484 KOG0063 RNAse L inhibitor, ABC 97.3 0.00015 3.3E-09 77.2 3.2 122 306-427 99-262 (592)
485 cd01896 DRG The developmentall 97.3 0.00061 1.3E-08 68.7 7.5 57 308-380 2-59 (233)
486 PF04548 AIG1: AIG1 family; I 97.3 0.00055 1.2E-08 68.0 7.0 25 308-332 2-26 (212)
487 TIGR00450 mnmE_trmE_thdF tRNA 97.3 0.00052 1.1E-08 75.7 7.3 58 308-380 205-263 (442)
488 cd04163 Era Era subfamily. Er 97.3 0.0018 3.9E-08 59.7 9.7 87 192-299 78-164 (168)
489 cd01888 eIF2_gamma eIF2-gamma 97.2 0.0013 2.7E-08 64.8 8.9 97 189-301 99-196 (203)
490 PTZ00258 GTP-binding protein; 97.2 0.00024 5.2E-09 76.6 3.9 22 308-329 23-44 (390)
491 cd01900 YchF YchF subfamily. 97.2 0.00017 3.6E-09 74.4 2.4 22 309-330 1-22 (274)
492 TIGR03594 GTPase_EngA ribosome 97.2 0.0012 2.5E-08 72.5 9.2 93 192-302 250-342 (429)
493 cd01876 YihA_EngB The YihA (En 97.2 0.0004 8.6E-09 64.4 4.5 55 308-378 1-55 (170)
494 cd04166 CysN_ATPS CysN_ATPS su 97.2 0.0027 5.8E-08 62.7 10.6 91 192-297 96-187 (208)
495 cd01879 FeoB Ferrous iron tran 97.2 0.001 2.2E-08 61.5 7.1 111 311-440 1-112 (158)
496 cd01898 Obg Obg subfamily. Th 97.2 0.00029 6.3E-09 66.2 3.3 55 308-378 2-58 (170)
497 cd04165 GTPBP1_like GTPBP1-lik 97.2 0.0012 2.7E-08 66.1 8.0 45 196-255 109-153 (224)
498 TIGR00991 3a0901s02IAP34 GTP-b 97.1 0.00036 7.7E-09 72.8 4.0 24 307-330 39-62 (313)
499 COG1163 DRG Predicted GTPase [ 97.1 0.00036 7.9E-09 72.1 3.9 86 308-413 65-152 (365)
500 cd04163 Era Era subfamily. Er 97.1 0.00047 1E-08 63.7 4.4 23 307-329 4-26 (168)
No 1
>PRK13796 GTPase YqeH; Provisional
Probab=100.00 E-value=7.8e-60 Score=502.47 Aligned_cols=365 Identities=35% Similarity=0.646 Sum_probs=301.1
Q ss_pred CCCCCcCccccccCCCCCccccCCcchhhhhhhcccccccchhhhhhhhccCCceeecccccchhhhcCCCceecccccc
Q 007511 82 TVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHA 161 (601)
Q Consensus 82 ~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~C~RC~~ 161 (601)
.+|+||||.||++||++|||+|.. . +++. ..+..++|||||+
T Consensus 1 ~~C~GCG~~lq~~~~~~~Gy~p~~-----~------------------~~~~---------------~~~~~~~C~RC~~ 42 (365)
T PRK13796 1 LRCIGCGAAIQTEDKNKPGYAPAS-----A------------------LKKG---------------LETEEVYCQRCFR 42 (365)
T ss_pred CcccCCCceeEcCCCCCCCCCCHH-----H------------------hhcc---------------cccCCeEchhhhh
Confidence 379999999999999999999641 0 1110 0123689999999
Q ss_pred ccccCcccccccccCCCCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCC
Q 007511 162 LRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVP 241 (601)
Q Consensus 162 l~hy~~~~~~~~~~~lP~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~ 241 (601)
|+|||++.+.. +++++|.+. +.++....++|++|||++||++++.+.+.+++. + .
T Consensus 43 l~hy~~~~~~~----~~~~~~~~~----l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~----------------~-k 97 (365)
T PRK13796 43 LKHYNEIQDVS----LTDDDFLKL----LNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG----------------N-N 97 (365)
T ss_pred hhccCcccCCC----CCHHHHHHH----HHhhcccCcEEEEEEECccCCCchhHHHHHHhC----------------C-C
Confidence 99999987654 456677643 233334466999999999999998888777643 1 2
Q ss_pred cEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhH
Q 007511 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (601)
Q Consensus 242 ~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKST 321 (601)
++++|+||+||++++...+++..|++.+.+..|. .+.+++++|+.+++|.+.+++.+..+. .++.+++||.+||||||
T Consensus 98 pviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~-~~~~v~~vSAk~g~gI~eL~~~I~~~~-~~~~v~vvG~~NvGKST 175 (365)
T PRK13796 98 PVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGL-RPVDVVLISAQKGHGIDELLEAIEKYR-EGRDVYVVGVTNVGKST 175 (365)
T ss_pred CEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCC-CcCcEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEcCCCCcHHH
Confidence 7999999999998766667888999988777664 345799999999999999999985553 45589999999999999
Q ss_pred HHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhccccc
Q 007511 322 LLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE 401 (601)
Q Consensus 322 LLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iara 401 (601)
|||+|++... |. ...++++..||||++.+.+. +.+...++||||+...+++.+.|+..+++++.+.+.
T Consensus 176 LiN~L~~~~~---~~-------~~~~~~s~~pGTT~~~~~~~--l~~~~~l~DTPGi~~~~~~~~~l~~~~l~~~~p~k~ 243 (365)
T PRK13796 176 LINRIIKEIT---GE-------KDVITTSRFPGTTLDKIEIP--LDDGSFLYDTPGIIHRHQMAHYLSAKDLKIISPKKE 243 (365)
T ss_pred HHHHHHhhcc---Cc-------cceEEecCCCCccceeEEEE--cCCCcEEEECCCccccchhhhcCCHHHHhhcCCCcc
Confidence 9999997541 21 13567888999999888775 444568999999998888899999999999999999
Q ss_pred cCCCEEEeccchHHHHHHHHHHHHHhcCceEEEEEEeecCEEEeecceecchHHHHHHHcCCccCCCCcHhHHHHhCCce
Q 007511 402 LKPRTYRIKAGHSIHIAGLMRMDVEESSVESIYVTVWASPYLPLHMGKTENACTMVEKHFGRQLQPPIGEKRVEELGKWV 481 (601)
Q Consensus 402 L~P~lllLD~~~~~~l~~lir~~~~~~g~tii~~~~~ad~vl~l~~Gki~~a~e~~~~~~g~~l~pP~~~~~l~~l~~~~ 481 (601)
++|++|.+.++++++++|++|.+..+++.. .++.|++..+.+|.+++++|+++|++|+|..+.||..+ .++.+++|+
T Consensus 244 i~p~~~~l~~gq~l~~ggl~r~d~~~~~~~--~~~~~~~~~l~~H~t~~e~a~~~~~~~~g~~l~pp~~~-~~~~~~~~~ 320 (365)
T PRK13796 244 IKPKTYQLNEEQTLFLGGLARFDYVSGGRR--SFTAYFDNNLNIHRTKLEKADALYEKHLGDLLTPPTKE-ELEDFPPLV 320 (365)
T ss_pred cCceEEEECCCCEEEEeeEEEEEEecCCcc--EEEEEcCCCceeeeccccchhHHHHhhCCCCCCCCchh-HHhhccCce
Confidence 999999999999999999999988764432 46789999999999999999999999999999999754 467789999
Q ss_pred eeEEEEecCCCCCccceEEEcCCcEEEeeecCCcEEEEEcCCceEEEEcCCCC
Q 007511 482 RKEFHVSGSSWDSSSVDIAAAGLGWFSVRLKGEAALGVWTYEGVDIVLRNALL 534 (601)
Q Consensus 482 ~~~~~i~g~~~~~~~~Di~i~glGwi~v~~~g~~~i~v~tp~gv~v~~R~~l~ 534 (601)
+++|.+.+ ..||||+|||||+|++ ++.+++|+|+||+|++|+||+
T Consensus 321 ~~~~~~~~------~~Divi~glGwi~v~~--~~~~~~~~p~gv~v~~R~~li 365 (365)
T PRK13796 321 RHEFTIKE------KTDIVFSGLGWITVPG--GAKVAAWAPKGVDVVIRKALI 365 (365)
T ss_pred eEEEEECC------cccEEEcCCceEEECC--CeEEEEEecCCceEEeecccC
Confidence 99999943 4899999999999985 788999999999999999986
No 2
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=100.00 E-value=4e-57 Score=481.14 Aligned_cols=360 Identities=35% Similarity=0.654 Sum_probs=299.9
Q ss_pred CCCcCccccccCCCCCccccCCcchhhhhhhcccccccchhhhhhhhccCCceeecccccchhhhcCCCceecccccccc
Q 007511 84 CPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHALR 163 (601)
Q Consensus 84 C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~C~RC~~l~ 163 (601)
|+||||.||++||+.|||+|.. .++ .+.++|||||+|+
T Consensus 1 C~GCG~~lq~~d~~~~Gy~p~~-----------------------~~~-------------------~~~~~C~RC~~l~ 38 (360)
T TIGR03597 1 CIGCGAAIQTTDPKKPGYTPKS-----------------------ALE-------------------KEEVYCQRCFRLK 38 (360)
T ss_pred CCCCCceeEcCCCCCCCCCchH-----------------------HcC-------------------cCCeeecchhhhh
Confidence 9999999999999999999641 011 1268999999999
Q ss_pred ccCcccccccccCCCCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcE
Q 007511 164 HYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRV 243 (601)
Q Consensus 164 hy~~~~~~~~~~~lP~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~v 243 (601)
|||++.+.. +++++|.+ .+......+++|++|+|++|+++++.+.+.+++. + .++
T Consensus 39 hy~~~~~~~----~~~e~f~~----~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~----------------~-~pi 93 (360)
T TIGR03597 39 HYNEIQDVE----LNDDDFLN----LLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG----------------G-NPV 93 (360)
T ss_pred ccCccccCC----CCHHHHHH----HHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC----------------C-CCE
Confidence 999987754 45666654 3334456789999999999999999888877653 1 279
Q ss_pred EEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHH
Q 007511 244 VLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLL 323 (601)
Q Consensus 244 ilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLL 323 (601)
++|+||+||++++.....+.+|+++++++.|. ...+++.+|+.+++|.+++++.+..+. .+..+++||.+||||||||
T Consensus 94 ilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~-~~~~i~~vSAk~g~gv~eL~~~l~~~~-~~~~v~~vG~~nvGKStli 171 (360)
T TIGR03597 94 LLVGNKIDLLPKSVNLSKIKEWMKKRAKELGL-KPVDIILVSAKKGNGIDELLDKIKKAR-NKKDVYVVGVTNVGKSSLI 171 (360)
T ss_pred EEEEEchhhCCCCCCHHHHHHHHHHHHHHcCC-CcCcEEEecCCCCCCHHHHHHHHHHHh-CCCeEEEECCCCCCHHHHH
Confidence 99999999998876677889999888877764 234789999999999999999986553 3458999999999999999
Q ss_pred HHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhccccccC
Q 007511 324 NAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKELK 403 (601)
Q Consensus 324 n~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL~ 403 (601)
|+|++...... ..++.+..||||++.+.+. +.+...++||||+...++..+.|+..+.+++.+.+.++
T Consensus 172 N~l~~~~~~~~----------~~~~~s~~pgtT~~~~~~~--~~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~~~~~i~ 239 (360)
T TIGR03597 172 NKLLKQNNGDK----------DVITTSPFPGTTLDLIEIP--LDDGHSLYDTPGIINSHQMAHYLDKKDLKYITPKKEIK 239 (360)
T ss_pred HHHHhhccCCc----------ceeeecCCCCeEeeEEEEE--eCCCCEEEECCCCCChhHhhhhcCHHHHhhcCCCCccC
Confidence 99997542110 2456788899998877664 33446799999999888888999999999999999999
Q ss_pred CCEEEeccchHHHHHHHHHHHHHhcCceEEEEEEeecCEEEeecceecchHHHHHHHcCCccCCCCcHhHHHHhCCceee
Q 007511 404 PRTYRIKAGHSIHIAGLMRMDVEESSVESIYVTVWASPYLPLHMGKTENACTMVEKHFGRQLQPPIGEKRVEELGKWVRK 483 (601)
Q Consensus 404 P~lllLD~~~~~~l~~lir~~~~~~g~tii~~~~~ad~vl~l~~Gki~~a~e~~~~~~g~~l~pP~~~~~l~~l~~~~~~ 483 (601)
|.++.++++++.+++++.+.+...+. ...++.|++..+.+|.+++++++++|++++|..+.||.. +.+..+++|+.+
T Consensus 240 ~~~~~l~~~q~~~~ggl~~~d~~~~~--~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~g~~l~pp~~-~~~~~~~~~~~~ 316 (360)
T TIGR03597 240 PKTYQLNPNQTLFLGGLARFDYLKGE--KTSFTFYVSNELNIHRTKLENADELYNKHLGNLLSPPCL-DDKFNLPELVFH 316 (360)
T ss_pred ceEEEeCCCCEEEEceEEEEEEecCC--ceEEEEEccCCceeEeechhhhHHHHHhhcCCcCCCCCh-HHHHhccCceeE
Confidence 99999999999999999998876633 235678999999999999999999999999999999964 457788999999
Q ss_pred EEEEecCCCCCccceEEEcCCcEEEeeecCCcEEEEEcCCceEEEEcCCCC
Q 007511 484 EFHVSGSSWDSSSVDIAAAGLGWFSVRLKGEAALGVWTYEGVDIVLRNALL 534 (601)
Q Consensus 484 ~~~i~g~~~~~~~~Di~i~glGwi~v~~~g~~~i~v~tp~gv~v~~R~~l~ 534 (601)
+|.+.+ ..||+|+|||||+|+. +++.+++|+|+||+|++|+||+
T Consensus 317 ~~~~~~------~~divi~glGwi~v~~-~~~~~~~~~p~gv~v~~R~~li 360 (360)
T TIGR03597 317 TFTIKE------KTDIVFSGLGWITVKR-GGAKVKVYAPKGVGVSLRKALI 360 (360)
T ss_pred EEEECC------cccEEEecCcEEEEec-CCEEEEEEeCCceEEEEecccC
Confidence 999863 4899999999999985 5689999999999999999986
No 3
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1.6e-51 Score=435.19 Aligned_cols=482 Identities=39% Similarity=0.570 Sum_probs=383.1
Q ss_pred cccccCCCCCCCC--CCCCCCCCcC--ccccccC--CCCCccccCCcchhhhh-hh-cccccccchhhhhhhhccCCcee
Q 007511 66 LALTRDGNYDEAT--PKLTVCPGCG--VLMQDTN--PKHPGYFIRPSQNLNKV-RK-SHLVHVANESEFSNSLKKGGLVV 137 (601)
Q Consensus 66 ~~~~~~~~~~~~~--~~~~~C~GCG--~~lQ~~d--p~~pGY~~~~~~~~~~~-~~-~~l~~~~~~~~~~~~~~~g~~~e 137 (601)
.|+...++++|.. ...+.|+||| ..+|..+ +..||||.++..+.+.- .. ..+.+.++..+.......+....
T Consensus 58 ~P~~~~~~~~d~d~~~~~~~cpgc~~l~~~~~~~~~~v~~~~y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~ 137 (572)
T KOG1249|consen 58 LPLEIFLRLSERDGFLAAIVCPGCGFLEHMRAALAVPVVPGEYKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGS 137 (572)
T ss_pred CchHhhccccccccccccccCCcchHHHHhhhhccCccChhhhhhhhhhhhhcccceEEeeecccCccccccchhhcccC
Confidence 5666778888888 4788999999 9999988 99999998753321111 00 11222222211111111111100
Q ss_pred ec---ccccchhhhcCCCceeccccccccccCcccccccccCCCCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCcc
Q 007511 138 FE---AENETSEVKKHEKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFP 214 (601)
Q Consensus 138 ~~---~~~~~~~~~~~~~~~~C~RC~~l~hy~~~~~~~~~~~lP~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~ 214 (601)
.. .-++-+...++..+.+|+||+.++||+.+.....+++.|+++|.+....++........+|+.|+|+.||.|++.
T Consensus 138 ~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~df~Gdf~ 217 (572)
T KOG1249|consen 138 PRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVDFRGDFY 217 (572)
T ss_pred CceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheeeccCcee
Confidence 00 000111223344589999999999999999999999999999987765555555566789999999999999998
Q ss_pred HHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCcc
Q 007511 215 RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKS 294 (601)
Q Consensus 215 ~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~ 294 (601)
......+++....|.-.+....+.+.+.++.+.||+|.++..++..++..|....++..+..+.-.++.+++.+.+|.+.
T Consensus 218 lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~ 297 (572)
T KOG1249|consen 218 LVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERD 297 (572)
T ss_pred eeeecccchhhHHHHHhhhccccccccceeeeeecccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHHH
Confidence 76666665543333334444444566679999999999998888889999988877777655555678889999999888
Q ss_pred ccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhc
Q 007511 295 LIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFD 374 (601)
Q Consensus 295 LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llD 374 (601)
++....-.....+.|+.||.+++||+|+||.|..... | ..-...+++.|+||++.+.+...+....+++|
T Consensus 298 l~~~~~~~ag~~~~v~~vg~t~a~~e~~~~~~~~~~~---a-------~~~~~~e~~vPgtTLg~~ri~~i~~~~~w~YD 367 (572)
T KOG1249|consen 298 LLALETGDAGKAGPVAAVGRTFAGSEELINAMAKELH---A-------DVEALAEEPVPGTTLGIRRIEGIFKRGAWLYD 367 (572)
T ss_pred HHHhhhhccccccchHHhhhhhhccchhhhhhhhhhc---c-------chhccccCCCCcccccceeeeccccccceeec
Confidence 7776644556667888899999999999999985442 2 11245678889999998888766677789999
Q ss_pred cCCCcCcCCccCCCCHHHHHHhccccccCCCEEEeccchHHHHHHHHHHHHHhcCceEEEEEEeecCEEEeecceecchH
Q 007511 375 TPGLLHPNQITTRLTREEQKLVNINKELKPRTYRIKAGHSIHIAGLMRMDVEESSVESIYVTVWASPYLPLHMGKTENAC 454 (601)
Q Consensus 375 tpGL~~~~~~~~~LSgGe~qrv~iaraL~P~lllLD~~~~~~l~~lir~~~~~~g~tii~~~~~ad~vl~l~~Gki~~a~ 454 (601)
|||+.+.++....|...|+-.|.+.+.|+|+.+.+.|+++.+|+|++|.+..+......+++.||+..+++|.+.+++|+
T Consensus 368 TPG~~~~~q~~~llt~eEl~~v~p~~~lrprtf~vkpG~sl~iGGl~RLDilqa~~~~~~~Tv~as~~Lplhi~~t~~Ae 447 (572)
T KOG1249|consen 368 TPGVLNPNQILSLLTSEELLNVTPRRVLRPRTFRVKPGYSLFIGGLVRLDILQASVETQYFTVFASEQLPLHIGPTEEAE 447 (572)
T ss_pred CCCccChhhhhhhccHHHhhhcCcccccccceEEcCCCcEEEEeeeEEeehhhccccceEEEEEecCcceeeecchhhHH
Confidence 99999999999999999999999999999999999999999999999999887555555889999999999999999999
Q ss_pred HHHHHHcCCccC--CCCcHhHHHHhCCceeeEEEE-ecCCCCCc-cceEEEcCCcEEEeeecCCcEEEEEcCCceEEEEc
Q 007511 455 TMVEKHFGRQLQ--PPIGEKRVEELGKWVRKEFHV-SGSSWDSS-SVDIAAAGLGWFSVRLKGEAALGVWTYEGVDIVLR 530 (601)
Q Consensus 455 e~~~~~~g~~l~--pP~~~~~l~~l~~~~~~~~~i-~g~~~~~~-~~Di~i~glGwi~v~~~g~~~i~v~tp~gv~v~~R 530 (601)
++|++|+|..+. ||.++.+|.+++.|+.+++.+ .|.+|+.. ++||+++|+||++|+..+.+.+++|||+|.++++|
T Consensus 448 ~~y~~~~G~rll~vPp~genRm~ewpgl~~k~~~~~~G~~~d~~~~~DI~lSslGWvsv~~~~~~~L~~~Tp~~~~it~R 527 (572)
T KOG1249|consen 448 AFYEKHLGTRLLLVPPGGENRMTEWPGLQGKDGEVMEGRNWDERGSCDIALSSLGWVSVTLKGDATLRAWTPEGAGITAR 527 (572)
T ss_pred HHHHHhcCCeeeecCCcchhhHhhCCCcccccceeecccccccccccceEecccceEEeecCcceeecccccccCceEEe
Confidence 999999999776 999999999999999999999 89999988 89999999999999999999999999999999999
Q ss_pred -CCCCCCcccccccCCcchhHHhhhhHHHHH
Q 007511 531 -NALLPYRSQVFEVAGFTVSKIISKADQSLN 560 (601)
Q Consensus 531 -~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (601)
+||+||.+.+| ||++++.+..+.|-.+
T Consensus 528 i~pllP~~a~~~---G~~i~~S~ay~~q~~~ 555 (572)
T KOG1249|consen 528 IPPLLPYRASLF---GKRIPKSVAYKTQPIQ 555 (572)
T ss_pred cCcccccchhhc---ceecccceeeeecccC
Confidence 99999999987 9999999999987333
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=1.2e-27 Score=229.99 Aligned_cols=168 Identities=23% Similarity=0.306 Sum_probs=145.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------------cccccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-------------GEEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-------------~~~~~~i~~ 346 (601)
|.+.+..|.||..++|++| ++.+.+|++.+ +|||||||||||++|.++..+++|.+ ...|+++|+
T Consensus 3 i~i~~l~K~fg~~~VLkgi-~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 3 IEIKNLSKSFGDKEVLKGI-SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEEEeeeEEeCCeEEecCc-ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 5677899999999999999 99999998665 99999999999999999999999954 235678999
Q ss_pred eeecCC--CCCc-eeeeeeecc----cc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 347 LTEAPV--PGTT-LGIVRVEGV----LP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~----l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
|||+.. |++| ++|+.+.-. .. ...++++.+||.+ .+.++.+|||||||||+||||| +|+++++
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 999987 9999 888765311 11 1257899999998 8899999999999999999999 9999998
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
||.....+..+++.++.+ |.|.+. +...|||++.++.|++
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~G~i 214 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKI 214 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeCCEE
Confidence 899999999999999988 778774 4458999999999976
No 5
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.1e-25 Score=231.92 Aligned_cols=179 Identities=22% Similarity=0.308 Sum_probs=152.0
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEee
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLT 348 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~ 348 (601)
.|.+.++.+.||...+++++ ++.+..|++++ +||||||||||||+|+|+..|++|.+ ...+|.+++||
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i-~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDV-NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCceeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 47788999999976689999 99999997655 99999999999999999999999965 45678999999
Q ss_pred ecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 349 EAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
|++. |++| .+|+.+.....+ ..++.+.++|.+ .++++.+|||||||||++|||| +|++++|
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence 9997 9999 999998766543 157888999988 8999999999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecchH---HHHHH
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTENAC---TMVEK 459 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~a~---e~~~~ 459 (601)
|...+..+...++.+..+.+.|+++++ .++|++++|++|++.+.. ++|.+
T Consensus 162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 566677788888888777788888554 589999999999986654 45554
No 6
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.92 E-value=5.4e-25 Score=214.28 Aligned_cols=189 Identities=40% Similarity=0.698 Sum_probs=134.8
Q ss_pred ccccccccccCcccccccccCCCCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcC
Q 007511 156 CARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEG 235 (601)
Q Consensus 156 C~RC~~l~hy~~~~~~~~~~~lP~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~g 235 (601)
|+|||+|+|||++.... +|..++ +...+......+|+|++|+|+.+++.+.+..+.... .
T Consensus 1 C~rC~~l~~~~~~~~~~----~~~~~~---~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~------------~- 60 (190)
T cd01855 1 CQRCFRLKHYNKIDPVE----IPDEDF---ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFG------------G- 60 (190)
T ss_pred CcchhhhhccCcccccc----CChHHH---HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhc------------C-
Confidence 99999999999987643 344443 234556667889999999999999877766552110 0
Q ss_pred CCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHH-HHHcCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECC
Q 007511 236 KSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR-AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGA 314 (601)
Q Consensus 236 k~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~-~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~ 314 (601)
+ .|+++|+||+|++++......+..|.... .+..+. ...+++.+|+..++|.+++++.+..+...++.++++|.
T Consensus 61 ---~-~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~ 135 (190)
T cd01855 61 ---N-NPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGL-KPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGA 135 (190)
T ss_pred ---C-CcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCC-CcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcC
Confidence 2 37999999999987654444566665221 122221 23468999999999999999998666555668999999
Q ss_pred CCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCC
Q 007511 315 QNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (601)
Q Consensus 315 nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL 378 (601)
+|+|||||||+|++...... +....+.++..||||.+...+.. .....++||||+
T Consensus 136 ~nvGKStliN~l~~~~~~~~-------~~~~~~~~~~~~gtT~~~~~~~~--~~~~~~~DtPG~ 190 (190)
T cd01855 136 TNVGKSTLINALLKKDNGKK-------KLKDLLTTSPIPGTTLDLIKIPL--GNGKKLYDTPGI 190 (190)
T ss_pred CCCCHHHHHHHHHHhccccc-------ccccccccCCCCCeeeeeEEEec--CCCCEEEeCcCC
Confidence 99999999999997643211 01123456777999988877753 335789999996
No 7
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.9e-25 Score=224.98 Aligned_cols=174 Identities=21% Similarity=0.275 Sum_probs=147.8
Q ss_pred EEEEeEeecCC-----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc---------------ccc
Q 007511 282 HFVSAVKNWGL-----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD---------------GEE 340 (601)
Q Consensus 282 ~lvSa~kg~G~-----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i---------------~~~ 340 (601)
.+.++.+.|.. ..+++++ ++.+.+|+++. ||.||||||||+++|.++..|++|.+ +..
T Consensus 3 ~l~~vsK~~~~~~~~~~~al~~v-sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 3 ELENVSKTFGQTGTGTVTALDDV-SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred EEEeeeeeeccCCCCceeeeccc-eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 34444455543 4689999 99999999877 99999999999999999999999954 456
Q ss_pred ccceeEeeecCC--CCCc-eeeeeeeccccch---------hhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 341 KNIVSHLTEAPV--PGTT-LGIVRVEGVLPAQ---------AKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT-~~~i~~~~~l~~~---------~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
|++||++||.+. ...| .+|+.++..+.+. .++++.+||.+ .++++.+|||||+|||+||||| +|+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~ 161 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK 161 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC
Confidence 789999999987 4455 8899887655442 58999999998 8899999999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecchHHH
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTENACTM 456 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~a~e~ 456 (601)
++++ ||..+..+..+++....+.|.|++.++ .+|||+.+|+.|++.+-...
T Consensus 162 iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 162 ILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred EEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccH
Confidence 9998 899999999999999999999988544 59999999999998654443
No 8
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=1.5e-25 Score=234.17 Aligned_cols=174 Identities=21% Similarity=0.264 Sum_probs=150.6
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEee
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLT 348 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~ 348 (601)
.+.+.++.+.||...+++++ ++.+.+|+++ ++|||||||||||++|+|+..|++|.+ ...+|.+++||
T Consensus 5 ~l~i~~v~k~yg~~~av~~i-sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDI-SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred eEEEEeeeeecCCeeEEecc-eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 46788899999988999999 9999999865 599999999999999999999999954 56788999999
Q ss_pred ecCC--CCCc-eeeeeeeccccc----------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe---
Q 007511 349 EAPV--PGTT-LGIVRVEGVLPA----------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI--- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l~~----------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL--- 409 (601)
|++. |++| .+|+.|...+.. ..++++..|+.. .++++++|||||||||++|||| +|++++|
T Consensus 84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP 163 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc
Confidence 9997 9999 899988765222 157889999988 8899999999999999999999 9999998
Q ss_pred ----ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecchH
Q 007511 410 ----KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTENAC 454 (601)
Q Consensus 410 ----D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~a~ 454 (601)
|...+..+..-++.+..+.|.|.++++ .++||+++|++|++++..
T Consensus 164 lSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~g 219 (352)
T COG3842 164 LSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVG 219 (352)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecC
Confidence 677777788777777777788888544 699999999999997654
No 9
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.91 E-value=8.8e-25 Score=219.41 Aligned_cols=170 Identities=22% Similarity=0.334 Sum_probs=142.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEe
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v 347 (601)
+.+.++..+|+.+.+++++ ++.+.+|++.. +|||||||||||++|+|+++|.+|.+ .+.++.++|+
T Consensus 3 L~~~~ls~~y~~~~il~~l-s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 3 LEVENLSFGYGGKPILDDL-SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eEEEEEEEEECCeeEEecc-eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 4567788899999999999 99999998655 99999999999999999999999955 3567889999
Q ss_pred eecCC--CCCc-eeeeeeeccccc--------------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEE
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLPA--------------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~~--------------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ll 407 (601)
+|++. .++| .+.+.+. +... ..+.++..|+.+ .++.+++|||||||||.||+|| +|+++
T Consensus 82 pQ~~~~~~~~tV~d~V~~G-R~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iL 160 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLG-RYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPIL 160 (258)
T ss_pred ccCCCCCCCcEEeehHhhc-CCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEE
Confidence 99976 4566 5554432 2110 135688999988 7889999999999999999999 99999
Q ss_pred Ee-------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeecceecc
Q 007511 408 RI-------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKTEN 452 (601)
Q Consensus 408 lL-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki~~ 452 (601)
+| |..++..++++++.+..+.|.|++ .+..|||+++.|++|++..
T Consensus 161 LLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a 219 (258)
T COG1120 161 LLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA 219 (258)
T ss_pred EeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe
Confidence 99 899999999999999977788877 3557999999999999743
No 10
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.5e-24 Score=214.26 Aligned_cols=167 Identities=22% Similarity=0.241 Sum_probs=140.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCcc-------ccccceeEeeecCC
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDG-------EEKNIVSHLTEAPV 352 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~-------~~~~~i~~v~qs~~ 352 (601)
+.+.++.+.|+...+++++ ++.+.+|++ .+||+||||||||||+|+|+..|++|.+. .....++|+||++.
T Consensus 4 l~i~~v~~~f~~~~vl~~i-~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~ 82 (248)
T COG1116 4 LEIEGVSKSFGGVEVLEDI-NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDA 82 (248)
T ss_pred EEEEeeEEEeCceEEeccc-eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCc
Confidence 4566788889889999999 999999975 55999999999999999999999999652 23457899999997
Q ss_pred --CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------c
Q 007511 353 --PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------K 410 (601)
Q Consensus 353 --pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D 410 (601)
|..| .+|+.+.....+ ..++++.+||.. .++++++|||||||||+||||| +|++++| |
T Consensus 83 LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALD 162 (248)
T COG1116 83 LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162 (248)
T ss_pred ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhh
Confidence 9888 999988755432 257899999988 8899999999999999999999 9999999 7
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecc
Q 007511 411 AGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMG 448 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~G 448 (601)
.-.+..+.+.+..+..+.+.|+++++ .++||+++|.++
T Consensus 163 alTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 163 ALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 77788888777776666678887544 588999999874
No 11
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=2.3e-24 Score=212.44 Aligned_cols=167 Identities=23% Similarity=0.308 Sum_probs=136.3
Q ss_pred EEEeEeecCC----ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc----------------cccc
Q 007511 283 FVSAVKNWGL----KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD----------------GEEK 341 (601)
Q Consensus 283 lvSa~kg~G~----~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i----------------~~~~ 341 (601)
+.+..+.|+. ..+++++ ++.+.+|+++ ++||||||||||||+|.|+..|++|.+ ..++
T Consensus 4 ~~~v~k~y~~~~~~~~~L~~v-~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~ 82 (226)
T COG1136 4 LKNVSKIYGLGGEKVEALKDV-NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRR 82 (226)
T ss_pred EeeeEEEeccCCcceEecccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHH
Confidence 3444554543 3689999 9999999754 599999999999999999999999853 2345
Q ss_pred cceeEeeecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 342 NIVSHLTEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
+.+|++||+.. |.+| .+|+.++..+.+ ...+++.+|+.+ .++++.+|||||||||+||||| +|+
T Consensus 83 ~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~ 162 (226)
T COG1136 83 KKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPK 162 (226)
T ss_pred HhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCC
Confidence 67999999997 9988 898875432211 256788889985 4488999999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeeccee
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKT 450 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki 450 (601)
+++. |......+..+++....+.|.|++.++ .+|||++.+++|++
T Consensus 163 iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 163 IILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred eEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 9998 889999999999999888787877443 59999999999984
No 12
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.90 E-value=1e-24 Score=213.90 Aligned_cols=173 Identities=20% Similarity=0.264 Sum_probs=149.5
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEe
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v 347 (601)
|.+.++++.|+...+++++ ++.+..|++.+ ||+|||||||+|++|.+++.|++|.+ .+.|++|||+
T Consensus 2 I~~~nvsk~y~~~~av~~v-~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDV-NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcCCceeeeee-eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 4567888999999999999 99999998766 99999999999999999999999965 3578899999
Q ss_pred eecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC---cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH---PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~---~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
-|..- |++| .+|+.+.-.+.+ ..++++.+||.. .++++++|||||||||.++||| +|.+++|
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 98775 9999 777765322222 268999999975 7999999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecchH
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTENAC 454 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~a~ 454 (601)
||-.+..+...+..+..+.+.|+++++ .++|++++|..|++.+++
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeC
Confidence 899999999999998888899998554 589999999999986654
No 13
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=1.7e-23 Score=219.54 Aligned_cols=305 Identities=27% Similarity=0.362 Sum_probs=207.8
Q ss_pred eccccccccccCcccccccccCCCCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhc
Q 007511 155 VCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKE 234 (601)
Q Consensus 155 ~C~RC~~l~hy~~~~~~~~~~~lP~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~ 234 (601)
.|+||++.+||+.+.+. |.+... ..+++.+.....|+|+.|+||+||.+|.++.+.+++..
T Consensus 1 ~~~~~~~~~~~~~i~~~------~g~~~k--~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~----------- 61 (322)
T COG1161 1 QCQRCFRLKHYNKIQWF------PGHMKK--AKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE----------- 61 (322)
T ss_pred CchhhhHHHhcccccCC------CCchHH--HHHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc-----------
Confidence 49999999999998753 343322 23567777888999999999999999999999998753
Q ss_pred CCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCcccc--------chhhhhcccC
Q 007511 235 GKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLI--------DDVVDLAGKR 306 (601)
Q Consensus 235 gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL--------~~I~~l~~~~ 306 (601)
++.++|+||+||+|. ..+.+|.+.+.++.+. ....+++..+.+...+. +.+..+....
T Consensus 62 ------k~~i~vlNK~DL~~~----~~~~~W~~~~~~~~~~----~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~ 127 (322)
T COG1161 62 ------KPKLLVLNKADLAPK----EVTKKWKKYFKKEEGI----KPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKG 127 (322)
T ss_pred ------CCcEEEEehhhcCCH----HHHHHHHHHHHhcCCC----ccEEEEeecccCccchHHHHHHHHHHHHHHHhhcC
Confidence 156999999999986 3589999888766542 35567888787777666 4443332221
Q ss_pred -----CcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCc
Q 007511 307 -----GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (601)
Q Consensus 307 -----G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~ 381 (601)
..+++||.+|+|||||||.|+|.. .+.+++.||+|.+...+. +.....++||||+..+
T Consensus 128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~---------------~~~~s~~PG~Tk~~q~i~--~~~~i~LlDtPGii~~ 190 (322)
T COG1161 128 LLKRKIRVGVVGYPNVGKSTLINRLLGKK---------------VAKTSNRPGTTKGIQWIK--LDDGIYLLDTPGIIPP 190 (322)
T ss_pred CCccceEEEEEcCCCCcHHHHHHHHhccc---------------ceeeCCCCceecceEEEE--cCCCeEEecCCCcCCC
Confidence 358889999999999999999754 266778899998877774 4455789999999875
Q ss_pred CCccCCCCHHHHHHhccccccCCCEEEeccchHHHHHHHHHHHHHhcCceEEEEEEeecCEEEeecceecchHHHHHHHc
Q 007511 382 NQITTRLTREEQKLVNINKELKPRTYRIKAGHSIHIAGLMRMDVEESSVESIYVTVWASPYLPLHMGKTENACTMVEKHF 461 (601)
Q Consensus 382 ~~~~~~LSgGe~qrv~iaraL~P~lllLD~~~~~~l~~lir~~~~~~g~tii~~~~~ad~vl~l~~Gki~~a~e~~~~~~ 461 (601)
+...+ ......+++..+++..++-++......+.+++ ....-.+. .....|-..- +|....+.+.+.+.++.
T Consensus 191 ~~~~~---~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~-~~~~~~~~--~~~~~y~~~~--~~~~~~~~~l~~~a~~r 262 (322)
T COG1161 191 KFDDD---ELVLLKLAPKGEIKDPVLPADEVAERLLGGLL-IDEHYGEK--LNITRYESNP--IHRTDPEEFLELIAKKR 262 (322)
T ss_pred Cccch---HHHhhccccccccCccccChHHHHHHHHhhhh-hhhhhhHh--hCCccccccc--ccccCHHHHHHHHHHHh
Confidence 54322 23345666777778888888877777777765 11111010 1111222111 55556677778888888
Q ss_pred CCccCCCCcHhHHHHhCCceeeEEEEecCCCCCccceEEEcCCcEEEeeecC--CcEEEEEcCCceEEEEcCC
Q 007511 462 GRQLQPPIGEKRVEELGKWVRKEFHVSGSSWDSSSVDIAAAGLGWFSVRLKG--EAALGVWTYEGVDIVLRNA 532 (601)
Q Consensus 462 g~~l~pP~~~~~l~~l~~~~~~~~~i~g~~~~~~~~Di~i~glGwi~v~~~g--~~~i~v~tp~gv~v~~R~~ 532 (601)
|..+.++...+ ++....+. -.|++..++||+++.... ......|.++++.+.+|.+
T Consensus 263 g~~l~~~g~~d-~~~~~~~~--------------~~d~~~gklg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (322)
T COG1161 263 GWLLLKGGEPD-LERAAETI--------------LKDIRNGKLGWFSLEEPEDNIEVVTIRDPEGSVVKARKS 320 (322)
T ss_pred hhhhcCCCCcc-HHHHHHHH--------------HHHHHhCCcceeecCCccccchhhhhhccchhhhhhhcc
Confidence 86676665222 11111100 128889999999987432 1345557777777666654
No 14
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.90 E-value=3.9e-24 Score=201.53 Aligned_cols=171 Identities=22% Similarity=0.253 Sum_probs=142.1
Q ss_pred EEEEEeEeecCC-ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc---------------cccccc
Q 007511 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD---------------GEEKNI 343 (601)
Q Consensus 281 V~lvSa~kg~G~-~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i---------------~~~~~~ 343 (601)
|.+.++.+.|+. .++|+++ ++.+.+|+ +|++|+|||||||||+.|.+..+|+.|.+ ...+++
T Consensus 2 I~f~~V~k~Y~~g~~aL~~v-s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGGREALRDV-SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCCchhhhCc-eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 345566677744 5599999 99999997 56699999999999999999999999944 457889
Q ss_pred eeEeeecCC--CCCc-eeeeeeeccccch---------hhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 344 VSHLTEAPV--PGTT-LGIVRVEGVLPAQ---------AKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 344 i~~v~qs~~--pgtT-~~~i~~~~~l~~~---------~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
||+|||+.. +..| .+|+.++....+. .+++|..||.+ .+..+.+|||||||||+||||+ +|.+++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl 160 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL 160 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence 999999987 7766 9999887654332 57899999988 7889999999999999999999 999998
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecch
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTENA 453 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~a 453 (601)
. ||..+..++.++..+... |.|++.++ .+-.|++.+.+|++...
T Consensus 161 ADEPTGNLDp~~s~~im~lfeeinr~-GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 161 ADEPTGNLDPDLSWEIMRLFEEINRL-GTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred ecCCCCCCChHHHHHHHHHHHHHhhc-CcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 7 899999999999988776 77777433 45678899999998653
No 15
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.7e-24 Score=209.39 Aligned_cols=168 Identities=22% Similarity=0.310 Sum_probs=142.3
Q ss_pred EEEEEeEeec-CCccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc---------------cccccc
Q 007511 281 LHFVSAVKNW-GLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD---------------GEEKNI 343 (601)
Q Consensus 281 V~lvSa~kg~-G~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i---------------~~~~~~ 343 (601)
+.+.++.+.| +...++++| ++.++.|+ |++||++||||||||++|.|+..++.|.+ ...+++
T Consensus 4 i~~~nl~k~yp~~~~aL~~V-nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 4 IEVKNLSKTYPGGHQALKDV-NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EEEeeeeeecCCCceeeeeE-eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 5677888999 899999999 99999987 55599999999999999999999999954 345678
Q ss_pred eeEeeecCC--CCCc-eeeeeeeccccc------------------hhhhhccCCCcC-cCCccCCCCHHHHHHhccccc
Q 007511 344 VSHLTEAPV--PGTT-LGIVRVEGVLPA------------------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKE 401 (601)
Q Consensus 344 i~~v~qs~~--pgtT-~~~i~~~~~l~~------------------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iara 401 (601)
+|+++|.+. |..+ .+|+... .+.. ....++.+||.+ ..+.+++|||||||||+|||+
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~g-rl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa 161 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLG-RLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA 161 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhh-hcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence 999999987 6666 6665432 1111 146789999988 778899999999999999999
Q ss_pred c--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeeccee
Q 007511 402 L--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKT 450 (601)
Q Consensus 402 L--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki 450 (601)
| +|++++. ||..+..++++++....+.|.|++ .+..||+|++-|..|++
T Consensus 162 L~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~i 226 (258)
T COG3638 162 LVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI 226 (258)
T ss_pred HhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcE
Confidence 9 8999986 999999999999999988888887 45579999999999997
No 16
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.6e-23 Score=205.37 Aligned_cols=171 Identities=19% Similarity=0.224 Sum_probs=141.0
Q ss_pred EEEEEeEeecCCcc----ccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------cccc
Q 007511 281 LHFVSAVKNWGLKS----LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EEKN 342 (601)
Q Consensus 281 V~lvSa~kg~G~~~----LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~~~ 342 (601)
+.+.+..+.|+... ++++| ++.+.+|+++. ||++|||||||.++|+|+.+|+.|.+. ...+
T Consensus 4 l~v~nl~~~y~~~~~~~~~l~~V-S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 4 LSVRNLSIVYGGGKFAFHALNNV-SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred EEEeceEEEecCCcchhhhhcce-eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 34556667777766 99999 99999998766 999999999999999999999999661 2356
Q ss_pred ceeEeeecCC----CCCc-eeeeeeeccccc-------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 343 IVSHLTEAPV----PGTT-LGIVRVEGVLPA-------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 343 ~i~~v~qs~~----pgtT-~~~i~~~~~l~~-------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
.+.+|||++. |..| .+.+..+....+ ..++++.+||.. .++++++|||||+||++||||| +|++
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pkl 162 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL 162 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCE
Confidence 7899999987 7666 444443322211 368999999987 8899999999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+++ |...+..+.+++.....+.+.+.+++ ..+|||+++|.+|++.+
T Consensus 163 LIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE 222 (252)
T COG1124 163 LILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVE 222 (252)
T ss_pred EEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEE
Confidence 999 78888999999999988888887754 45899999999999854
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=5e-24 Score=214.25 Aligned_cols=173 Identities=20% Similarity=0.264 Sum_probs=144.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------------cccccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-------------GEEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-------------~~~~~~i~~ 346 (601)
|.+.+.++.|+....+++| ++.+..|+... +|+|||||||||++|+|+..|+.|.+ ....++||+
T Consensus 3 i~i~~~~~~~~~~~a~~di-~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 3 IRINNVKKRFGAFGALDDI-SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred eeehhhhhhcccccccccc-eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 4456677888888888888 88888887554 99999999999999999999999955 234578999
Q ss_pred eeecCC--CCCc-eeeeeeeccccc-----------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 347 LTEAPV--PGTT-LGIVRVEGVLPA-----------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~l~~-----------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
++|.+. |++| .+|+.|...... ..++++...+.. .++++.+|||||+|||++|||| +|++|+|
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLL 161 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLL 161 (345)
T ss_pred EEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEee
Confidence 999987 9999 899988753331 157899999988 8899999999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceecchH
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTENAC 454 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~~a~ 454 (601)
|...+..+...++....+.+.++++ +..+|||+++|++|++++.+
T Consensus 162 DEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg 220 (345)
T COG1118 162 DEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVG 220 (345)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeC
Confidence 6667777888888877776777774 44699999999999987653
No 18
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2e-23 Score=208.70 Aligned_cols=168 Identities=18% Similarity=0.252 Sum_probs=137.5
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-------c--ccceeEeeec
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------E--KNIVSHLTEA 350 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------~--~~~i~~v~qs 350 (601)
|.+.++...|+...++++| ++.+.+|++.. |||||||||||+++|+|+++|.+|.+.. . +..||||||.
T Consensus 5 i~v~nl~v~y~~~~vl~~i-~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~ 83 (254)
T COG1121 5 IEVENLTVSYGNRPVLEDI-SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQK 83 (254)
T ss_pred EEEeeeEEEECCEeeeecc-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcc
Confidence 5677888888865799999 99999997654 9999999999999999999999997631 1 2579999995
Q ss_pred CC-----CCCceeeeeeeccc-------------cchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 351 PV-----PGTTLGIVRVEGVL-------------PAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 351 ~~-----pgtT~~~i~~~~~l-------------~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
.. |-|..+.+...... ....+.++..|+.+ .++.+.+|||||+|||.||||| +|++++|
T Consensus 84 ~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllL 163 (254)
T COG1121 84 SSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLL 163 (254)
T ss_pred cccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEe
Confidence 42 55546665543110 01257899999998 8999999999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeeccee
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKT 450 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki 450 (601)
|+.....+..++..+..+ |.|++ .+..++|+++.|.++-+
T Consensus 164 DEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~~~~ 217 (254)
T COG1121 164 DEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNRHLI 217 (254)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcCeeE
Confidence 899999999999999988 88887 35579999999876543
No 19
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=5.2e-23 Score=200.93 Aligned_cols=170 Identities=22% Similarity=0.236 Sum_probs=145.9
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc---------------cccccc
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD---------------GEEKNI 343 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i---------------~~~~~~ 343 (601)
-|.+.++.+.+|.+.+++++ ++.+.+|++.. +|+||+||||||++|.|+++|++|++ .+.+++
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v-~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGV-DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred eEEEeeeeeecCCEEEecCc-eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh
Confidence 36778899999999999999 99999998766 99999999999999999999999965 245678
Q ss_pred eeEeeecCC--CCCc-eeeeeeeccccch----------hhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 344 VSHLTEAPV--PGTT-LGIVRVEGVLPAQ----------AKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 344 i~~v~qs~~--pgtT-~~~i~~~~~l~~~----------~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
+|++||+.. ..+| .+|+.++..-... ..-++..||.. .+.++++|||||++|+++|||| +|++
T Consensus 87 ~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPel 166 (263)
T COG1127 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPEL 166 (263)
T ss_pred eeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCE
Confidence 999999887 5566 8999886432211 23477889976 7889999999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeeccee
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKT 450 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki 450 (601)
+++ ||.....+-.||+.+....+.|++.+ ...||+++++.+|++
T Consensus 167 l~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 167 LFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred EEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE
Confidence 999 89999999999999998888888743 458999999999997
No 20
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=1.2e-22 Score=210.94 Aligned_cols=171 Identities=20% Similarity=0.276 Sum_probs=145.3
Q ss_pred EEEEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-----------cccccceeEe
Q 007511 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-----------GEEKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-----------~~~~~~i~~v 347 (601)
+.+.+..+.|+ ...+++++ ++.+.+|++++ +|+||||||||||+|+|+..|++|.+ ...++.+||+
T Consensus 5 i~~~~l~k~~~~~~~~l~~v-s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGV-SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeecceEEEeCCCCEEEece-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 45678899999 69999999 99999998766 99999999999999999999999965 1345679999
Q ss_pred eecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe---
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI--- 409 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL--- 409 (601)
+|.+. |.+| .+++.+...+.+ ..++++.+||.. .++.+..||+|||||+.||.|| +|++++|
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP 163 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP 163 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 99986 8888 788776544432 247899999986 5778999999999999999999 9999999
Q ss_pred ----ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeecceecc
Q 007511 410 ----KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 ----D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..+++.+..+++.+++ .+..+||+++++++|++..
T Consensus 164 t~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~ 217 (293)
T COG1131 164 TSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA 217 (293)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE
Confidence 899999999999999988656776 3345799999999999843
No 21
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.8e-21 Score=193.20 Aligned_cols=236 Identities=19% Similarity=0.153 Sum_probs=161.1
Q ss_pred EeEeecCCccccchhhhhcccC-CcEEEECCCCCchhHHHHHHhccccCCCCCc----------------cccccceeEe
Q 007511 285 SAVKNWGLKSLIDDVVDLAGKR-GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGD----------------GEEKNIVSHL 347 (601)
Q Consensus 285 Sa~kg~G~~~LL~~I~~l~~~~-G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i----------------~~~~~~i~~v 347 (601)
++.+..|...+-- ++..+. |-+++.|++|+|||||||+|+|+.+|+.|.+ ...++++|||
T Consensus 5 ~~~~~lG~~~l~a---~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYV 81 (352)
T COG4148 5 NFRQRLGNFALDA---NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV 81 (352)
T ss_pred ehhhhcCceEEEE---eccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeE
Confidence 4444555433322 233343 5667799999999999999999999999954 3467889999
Q ss_pred eecCC--CCCc-eeeeeeecccc---chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------cc
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLP---AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KA 411 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~---~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~ 411 (601)
||+.. |++| +.|+.+..... ....+++++||.+ .++++..|||||+|||+|+||| .|++++| |.
T Consensus 82 FQDARLFpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 82 FQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred eeccccccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 99986 9999 88988764332 2367899999998 8999999999999999999999 9999999 66
Q ss_pred chHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc---hHHHHHHHcCCccCCCCcHhHHHHhCCce
Q 007511 412 GHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN---ACTMVEKHFGRQLQPPIGEKRVEELGKWV 481 (601)
Q Consensus 412 ~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~---a~e~~~~~~g~~l~pP~~~~~l~~l~~~~ 481 (601)
....+++-++..+..+....++++ .++||++++|.+|++.. .++.|.. ..-+|...+. +-+..
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~----~~~~p~~~~~--e~~~v- 234 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS----PDFPPWLPRE--EQSSV- 234 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC----cccCcccCcc--ccceE-
Confidence 677888999998888877777754 46899999999999843 4455542 2223332110 11111
Q ss_pred eeEEEEecCCCCCccceEEEcCCcEEEeeecC-----CcEEEEEcCCceEEEEcCCC
Q 007511 482 RKEFHVSGSSWDSSSVDIAAAGLGWFSVRLKG-----EAALGVWTYEGVDIVLRNAL 533 (601)
Q Consensus 482 ~~~~~i~g~~~~~~~~Di~i~glGwi~v~~~g-----~~~i~v~tp~gv~v~~R~~l 533 (601)
-+..+...+..+..+-+.+ |-+|+-|.... ...+++.. ..|.+.+++|-
T Consensus 235 -l~~~V~~hd~~y~lt~l~l-~~~~l~v~~~~a~~g~~~R~~I~a-~DVslal~~P~ 288 (352)
T COG4148 235 -LEGTVLEHDPRYGLTALAL-GDQHLWVPKLDAPVGARLRIRIQA-RDVSLALQKPE 288 (352)
T ss_pred -EEEEehhcCCCcceEEEec-CceEEEeeccCCCCCCcEEEEEEc-cceEEEecCcc
Confidence 1122333322233333433 36677765321 23344433 66777777653
No 22
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.7e-22 Score=211.25 Aligned_cols=173 Identities=17% Similarity=0.249 Sum_probs=143.8
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEee
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLT 348 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~ 348 (601)
-+.+.++.+.|+...+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+ ...++.+++++
T Consensus 6 ~l~~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vf 84 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNL-NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVF 84 (351)
T ss_pred EEEEEeEEEEECCeEEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 35677888899888899999 99999997655 99999999999999999999999954 22357899999
Q ss_pred ecCC--CCCc-eeeeeeecccc---c------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 349 EAPV--PGTT-LGIVRVEGVLP---A------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l~---~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
|++. |++| .+|+.+..... . ..++++.+||.. .++.+..|||||+|||+|||+| +|++++|
T Consensus 85 Q~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~ 164 (351)
T PRK11432 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPL 164 (351)
T ss_pred CCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 9986 8877 88887643221 1 146888899977 7889999999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecch
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTENA 453 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~a 453 (601)
|+..+..+...++.+..+.+.++++++ .+||++++|++|++...
T Consensus 165 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~ 218 (351)
T PRK11432 165 SNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI 218 (351)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 888899999999988776577777544 57999999999998553
No 23
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=4.4e-22 Score=211.95 Aligned_cols=171 Identities=18% Similarity=0.215 Sum_probs=141.9
Q ss_pred EEEEEeEeec-CCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEee
Q 007511 281 LHFVSAVKNW-GLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLT 348 (601)
Q Consensus 281 V~lvSa~kg~-G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~ 348 (601)
+.+.++.+.| +...+++++ ++.+.+|+++ ++|+|||||||||++|+|+.+|++|.+ ...++.++|++
T Consensus 4 l~i~~l~~~~~~~~~~l~~v-sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGI-DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEeEEEEeCCCCEEEeee-eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 5567888888 777899999 9999999865 599999999999999999999999954 12356899999
Q ss_pred ecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 349 EAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
|++. |++| .+++.+.....+ ..++++.+||.. .++.+.+|||||+|||+|||+| +|++++|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9886 8877 888876432211 146889999977 7889999999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+...++.+..+.+.++++++ .+||++++|++|++..
T Consensus 163 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~ 215 (356)
T PRK11650 163 SNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ 215 (356)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 788899999999987766577777544 5799999999999854
No 24
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.86 E-value=1e-21 Score=182.21 Aligned_cols=159 Identities=25% Similarity=0.282 Sum_probs=135.4
Q ss_pred CccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc----------------cccccceeEeeecCC--
Q 007511 292 LKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD----------------GEEKNIVSHLTEAPV-- 352 (601)
Q Consensus 292 ~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i----------------~~~~~~i~~v~qs~~-- 352 (601)
.-.+++++ ++.+.+|+ +.+||++|+||||||-.++|+..|++|++ ....+++|+||||..
T Consensus 22 ~l~IL~~V-~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Li 100 (228)
T COG4181 22 ELSILKGV-ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLI 100 (228)
T ss_pred ceeEeecc-eEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecc
Confidence 34578888 88888885 67799999999999999999999999965 124577999999997
Q ss_pred CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccc
Q 007511 353 PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAG 412 (601)
Q Consensus 353 pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~ 412 (601)
|.+| ++|+..+..+.+ ...++...|+.. ...++.+|||||||||+||||+ .|++++. |..
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 9998 999988876665 257899999987 7889999999999999999999 9999987 677
Q ss_pred hHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 413 HSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 413 ~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
.-..+.+++.....+.|.|.+.++ .-|+|.+.|..|+++
T Consensus 181 Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 181 TGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLV 225 (228)
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceec
Confidence 788899999988888888887554 478999999999875
No 25
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.86 E-value=6.6e-22 Score=210.38 Aligned_cols=173 Identities=22% Similarity=0.237 Sum_probs=143.8
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEee
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLT 348 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~ 348 (601)
.+.+.++.+.|+...+++++ ++.+..|+++. +|+|||||||||++|+|+.+|++|.+ ...++.++|++
T Consensus 4 ~l~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDI-SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred EEEEEEEEEEeCCeEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 36677888999888899999 99998887655 99999999999999999999999954 22457799999
Q ss_pred ecCC--CCCc-eeeeeeecccc---------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 349 EAPV--PGTT-LGIVRVEGVLP---------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l~---------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
|++. |++| .+|+.+..... ...++++.+||.. .++.+.+|||||+|||+|||+| +|++++|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~ 162 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPL 162 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9986 8888 88887643211 1257899999987 7889999999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecch
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTENA 453 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~a 453 (601)
|...+..+...++....+.+.|++++ ..+||++++|++|++...
T Consensus 163 s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~ 216 (353)
T TIGR03265 163 SALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV 216 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 78889999999998877667777744 458999999999998543
No 26
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.86 E-value=2.7e-21 Score=206.15 Aligned_cols=174 Identities=21% Similarity=0.217 Sum_probs=144.1
Q ss_pred ceEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCC--CCc----------ccccccee
Q 007511 279 TKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR--GGD----------GEEKNIVS 345 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~--G~i----------~~~~~~i~ 345 (601)
..+.+.++.+.|+...+++++ ++.+..|+++. +|+|||||||||++|+|+.+|++ |.+ ...++.++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYGANTVLDDL-SLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEECCeEEEeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 357788899999888899999 99999887655 99999999999999999999999 854 12356799
Q ss_pred EeeecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
+++|++. |++| .+++.+.....+ ..++++.+||.. .++.+.+|||||+|||+|||+| +|++++|
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD 162 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD 162 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999876 8888 888776432111 256899999987 7889999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhc-CceEEEE-------EEeecCEEEeecceecch
Q 007511 410 ------KAGHSIHIAGLMRMDVEES-SVESIYV-------TVWASPYLPLHMGKTENA 453 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~-g~tii~~-------~~~ad~vl~l~~Gki~~a 453 (601)
|+..+..+..+++.+..+. |.|++++ ..+||++++|++|++...
T Consensus 163 EP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~ 220 (362)
T TIGR03258 163 EPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAH 220 (362)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 8888999999999887764 6677744 357999999999998543
No 27
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=7.8e-22 Score=192.17 Aligned_cols=169 Identities=20% Similarity=0.225 Sum_probs=137.7
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------------cccccceeEe
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-------------GEEKNIVSHL 347 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-------------~~~~~~i~~v 347 (601)
.+.+...+||.-+++.++ ++.+.+|++.. +|+|||||||||++|+|+.++.+|.+ ...+..++|+
T Consensus 5 ~v~~l~~~YG~~~~L~gv-sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~V 83 (237)
T COG0410 5 EVENLSAGYGKIQALRGV-SLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYV 83 (237)
T ss_pred eEEeEeecccceeEEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeC
Confidence 456777889999999999 99999998655 99999999999999999999999865 2346678999
Q ss_pred eecCC--CCCc-eeeeeeeccccc--------hhhhhccCC-CcC-cCCccCCCCHHHHHHhcccccc--CCCEEEec--
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLPA--------QAKLFDTPG-LLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIK-- 410 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~~--------~~~llDtpG-L~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllLD-- 410 (601)
||... |.+| .+|+.+...... ..++++.+- |.. .++....|||||||.++||||| +|++++||
T Consensus 84 PegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEP 163 (237)
T COG0410 84 PEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163 (237)
T ss_pred cccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99886 8888 788776432221 234666544 433 7889999999999999999999 99999994
Q ss_pred -----cchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 411 -----AGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 411 -----~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|.-...|...++.+..+.+.|++.+ ..++||.++|..|++.
T Consensus 164 s~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv 216 (237)
T COG0410 164 SEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV 216 (237)
T ss_pred ccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE
Confidence 6778899999999987767777743 4589999999999983
No 28
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.85 E-value=8.7e-22 Score=210.70 Aligned_cols=172 Identities=17% Similarity=0.242 Sum_probs=143.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEeee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLTE 349 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~q 349 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+|||||||||++|+|+.+|++|.+ ...++.+++++|
T Consensus 15 L~l~~l~~~~~~~~~l~~v-sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 93 (375)
T PRK09452 15 VELRGISKSFDGKEVISNL-DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQ 93 (375)
T ss_pred EEEEEEEEEECCeEEEeee-EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEec
Confidence 5677888899887899999 99999997655 99999999999999999999999954 223567999999
Q ss_pred cCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 350 APV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
++. |++| .+|+.+.....+ ..++++.+||.. .++.+.+|||||+|||+|||+| +|++++|
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s 173 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 986 8878 888876432111 146788899987 7889999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecch
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTENA 453 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~a 453 (601)
|...+..+..+++....+.+.++++++ .+||++++|++|++...
T Consensus 174 ~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 174 ALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 788899999999988776677777544 47999999999998654
No 29
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.84 E-value=1.5e-21 Score=206.49 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=137.6
Q ss_pred EEEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------cc
Q 007511 281 LHFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~ 340 (601)
+.+.++.+.|+. ..+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+. ..
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~v-sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNV-SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 345566677742 3689999 99999998665 999999999999999999999999541 12
Q ss_pred ccceeEeeecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 341 KNIVSHLTEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++.+++++|... +..| .+++.+.....+ ..++++.+||.+ .++++.+|||||+|||+||||| +|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 567999999876 5556 777765432111 147899999987 7889999999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
+++| |+..+..+..+++....+.+.|++.++ .+||++++|++|++.
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv 220 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999 899999999999998776577777443 589999999999984
No 30
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.84 E-value=1.5e-21 Score=204.08 Aligned_cols=170 Identities=15% Similarity=0.213 Sum_probs=140.2
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEe
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHL 347 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v 347 (601)
.+.+.++.+.|+...+++++ ++.+.+|+++. +|+||||||||+++|+|+..|++|.+. ..++.++|+
T Consensus 7 ~i~i~~l~k~~~~~~~l~~v-sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGL-SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred eEEEEeEEEEECCeEEEecc-eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 36678889999888899999 99999998755 999999999999999999999999541 235679999
Q ss_pred eecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe---
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI--- 409 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL--- 409 (601)
+|.+. +.+| .+++.+...+.+ ..++++.+|+.. .++.+..||+||+||++||++| +|++++|
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEP 165 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP 165 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 99876 6667 777664322211 136788889876 7888999999999999999999 9999999
Q ss_pred ----ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 410 ----KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ----D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++.+..+ |.+++. +..+||++++|++|++.
T Consensus 166 t~gLD~~~~~~l~~~l~~l~~~-g~till~sH~l~e~~~~~d~i~il~~G~i~ 217 (306)
T PRK13537 166 TTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKI 217 (306)
T ss_pred CcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999988655 677773 34689999999999984
No 31
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.84 E-value=3e-21 Score=205.36 Aligned_cols=171 Identities=19% Similarity=0.280 Sum_probs=140.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEeee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLTE 349 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~q 349 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+ ...++.++|++|
T Consensus 3 L~i~~l~~~~~~~~~l~~i-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDI-SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEeCCeEEEEEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 4566788888877899999 99999997655 99999999999999999999999954 123467999999
Q ss_pred cCC--CCCc-eeeeeeeccc-------c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 350 APV--PGTT-LGIVRVEGVL-------P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l-------~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
++. |++| .+++.+.... . ...++++.+||.. .++++.+|||||+|||+|||+| +|++++|
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD 161 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 875 8777 7887664321 1 1146889999976 7889999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..+++.+..+.+.+++++ ..+||++++|++|++..
T Consensus 162 EP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~ 217 (353)
T PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ 217 (353)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 88899999999998876656777744 45899999999999854
No 32
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=3.4e-21 Score=206.45 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=141.4
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEeee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLTE 349 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~q 349 (601)
+.+.++.+.|+...+++++ ++.+..|++++ +|+|||||||||++|+|+.+|+.|.+ ...++.++|++|
T Consensus 20 l~l~~v~~~~~~~~~l~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ 98 (377)
T PRK11607 20 LEIRNLTKSFDGQHAVDDV-SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQ 98 (377)
T ss_pred EEEEeEEEEECCEEEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 5667888888877789999 89999897655 99999999999999999999999954 234567999999
Q ss_pred cCC--CCCc-eeeeeeecccc---c------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 350 APV--PGTT-LGIVRVEGVLP---A------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l~---~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
++. |++| .+|+.+..... . ..++++.+||.. .++.+..|||||+|||+|||+| +|++++|
T Consensus 99 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s 178 (377)
T PRK11607 99 SYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 178 (377)
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 986 8878 88887643211 1 147889999977 7889999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecch
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTENA 453 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~a 453 (601)
|...+..+...++....+.+.+++++ ..+||++++|++|++...
T Consensus 179 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 179 ALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE
Confidence 78888888888887766657777743 458999999999998654
No 33
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.83 E-value=4e-21 Score=205.73 Aligned_cols=171 Identities=20% Similarity=0.242 Sum_probs=139.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTE 349 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~q 349 (601)
+.+.++.+.|+...+++++ ++.+..|++++ +|+|||||||||++|+|+.+|++|.+. ..++.++|++|
T Consensus 4 l~i~~l~~~~~~~~vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDI-NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEeCCeEEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 5667888888877899999 99999997655 999999999999999999999999541 22457999999
Q ss_pred cCC--CCCc-eeeeeeecccc---------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 350 APV--PGTT-LGIVRVEGVLP---------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l~---------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
++. |++| .+++.+..... ...++++.+||.. .++.+..|||||+|||+||++| +|++++|
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 875 7777 77776532211 1246788999976 7888999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..+++....+.+.++++++ .+||++++|++|++..
T Consensus 163 ~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~ 214 (369)
T PRK11000 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (369)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 788889999999887765566777443 5799999999999854
No 34
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.83 E-value=1.3e-21 Score=191.94 Aligned_cols=167 Identities=23% Similarity=0.304 Sum_probs=140.6
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------------cccccceeEee
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-------------GEEKNIVSHLT 348 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-------------~~~~~~i~~v~ 348 (601)
..+..+.||.-.+++++ ++.+.+|++.. |||||||||||+|+|+|+++|++|.+ ...+..++..|
T Consensus 7 v~~l~k~FGGl~Al~~V-sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTF 85 (250)
T COG0411 7 VRGLSKRFGGLTAVNDV-SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTF 85 (250)
T ss_pred eccceeecCCEEEEece-eEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeec
Confidence 56788999999999999 99999998766 99999999999999999999999965 22345677888
Q ss_pred ecCC--CCCc-eeeeeeecccc--------------c-------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc-
Q 007511 349 EAPV--PGTT-LGIVRVEGVLP--------------A-------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l~--------------~-------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
|... +++| .+|+.+..... . ...+++.+||.+ .++.+..||+|||+++.|||||
T Consensus 86 Q~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa 165 (250)
T COG0411 86 QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALA 165 (250)
T ss_pred ccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHh
Confidence 8765 8888 88876542100 0 157899999988 8899999999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeeccee
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKT 450 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki 450 (601)
+|++++| .+.....+.++++.+..+.+.+++ .+..+|||+++|+.|++
T Consensus 166 ~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~ 228 (250)
T COG0411 166 TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228 (250)
T ss_pred cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcC
Confidence 9999999 577889999999999887677876 45679999999999985
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.83 E-value=5.5e-21 Score=202.34 Aligned_cols=170 Identities=14% Similarity=0.176 Sum_probs=140.0
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEe
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHL 347 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v 347 (601)
-+.+.++.+.|+...+++++ ++.+.+|+++. +|+|||||||||++|+|+..|++|.+. ..++.++++
T Consensus 41 ~i~i~nl~k~y~~~~~l~~i-s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v 119 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGL-SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVV 119 (340)
T ss_pred eEEEEEEEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEE
Confidence 36678899999988899999 99999998766 999999999999999999999999541 235679999
Q ss_pred eecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe---
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI--- 409 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL--- 409 (601)
+|.+. +.+| .+++.+...+.+ ..++++.+|+.. .++.+..||+||+||++||++| +|++++|
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEP 199 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEP 199 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99875 5666 776654221111 136788889976 7888999999999999999999 9999999
Q ss_pred ----ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 410 ----KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ----D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++.+..+ |.+++. +..+||++++|++|++.
T Consensus 200 t~gLD~~~r~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~~G~i~ 251 (340)
T PRK13536 200 TTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKI 251 (340)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999988765 677773 34689999999999984
No 36
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=6.3e-21 Score=191.84 Aligned_cols=168 Identities=24% Similarity=0.251 Sum_probs=132.3
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccccceeE
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEKNIVSH 346 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~~~i~~ 346 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.+++
T Consensus 3 ~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 81 (235)
T cd03261 3 LRGLTKSFGGRTVLKGV-DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGM 81 (235)
T ss_pred EEEEEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEE
Confidence 34556677767799999 99999997655 999999999999999999999999541 12456899
Q ss_pred eeecCC--CCCc-eeeeeeecc----ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 347 LTEAPV--PGTT-LGIVRVEGV----LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~----l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
++|.+. ++.| .+++.+... ... ..++++.+|+.. .++.+..|||||+|||+||++| +|++++|
T Consensus 82 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD 161 (235)
T cd03261 82 LFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred EccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999865 6656 666654211 111 145788889976 6788999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++....+.+.+++.+ ..+||++++|++|++.
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~ 216 (235)
T cd03261 162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV 216 (235)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE
Confidence 88899999999998766445666633 3579999999999974
No 37
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=6e-21 Score=189.06 Aligned_cols=168 Identities=22% Similarity=0.277 Sum_probs=131.8
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeecC
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEAP 351 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs~ 351 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|.+|.+. ..++.+++++|.+
T Consensus 3 ~~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 81 (213)
T cd03259 3 LKGLSKTYGSVRALDDL-SLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDY 81 (213)
T ss_pred eeeeEEEeCCeeeecce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCch
Confidence 34566677767799999 99999997655 999999999999999999999999651 1235689999986
Q ss_pred C--CCCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 352 V--PGTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
. ++.| .+++.+.... .. ..++++.+|+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L 161 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSAL 161 (213)
T ss_pred hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 5 5555 6666542111 11 146788899976 6778899999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+.+.+++.+ ..+||+++.|++|++.
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 210 (213)
T cd03259 162 DAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 78889999999998776446666633 3578999999999874
No 38
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=7.7e-21 Score=190.34 Aligned_cols=169 Identities=22% Similarity=0.211 Sum_probs=137.2
Q ss_pred EEEEEeEeecCCc-cccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc-------------ccccccee
Q 007511 281 LHFVSAVKNWGLK-SLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD-------------GEEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G~~-~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i-------------~~~~~~i~ 345 (601)
+.+.+....|+.. .+++++ ++.+.+|+ ++++|+||||||||+++|+|++.|..|.+ .+.++.+|
T Consensus 4 i~~~~l~~~y~~~~~~l~~v-~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 4 IEAENLSFRYPGRKAALKDV-SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred EEEEEEEEEcCCCceeeeee-EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 4455666677554 899999 99999885 55699999999999999999999999964 23567899
Q ss_pred EeeecCC---CC-Cceeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 346 HLTEAPV---PG-TTLGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 346 ~v~qs~~---pg-tT~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
+++|+|. -+ |..+.+.+.....+ ..+.++.+|+.+ .++.+..|||||+|||+||.+| +|++++|
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliL 162 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLL 162 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEE
Confidence 9999996 22 33555555322111 146788899987 7889999999999999999998 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
|+..+..+..+++.+..+.+.|++. +..+||++++|++|++
T Consensus 163 DEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i 217 (235)
T COG1122 163 DEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217 (235)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEE
Confidence 8999999999999998886777773 4568999999999998
No 39
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=7.4e-21 Score=189.43 Aligned_cols=168 Identities=16% Similarity=0.270 Sum_probs=132.3
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEeeec
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLTEA 350 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~qs 350 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.+++++|.
T Consensus 3 ~~~~~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (220)
T cd03265 3 VENLVKKYGDFEAVRGV-SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQD 81 (220)
T ss_pred EEEEEEEECCEEeeece-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCC
Confidence 45667777777899999 99999998655 999999999999999999999999541 123568999998
Q ss_pred CC--CCCc-eeeeeeecc---cc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe------
Q 007511 351 PV--PGTT-LGIVRVEGV---LP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------ 409 (601)
Q Consensus 351 ~~--pgtT-~~~i~~~~~---l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------ 409 (601)
+. +..| .+++.+... .. ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~ 161 (220)
T cd03265 82 LSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161 (220)
T ss_pred ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 75 5556 666543211 11 1146788899876 6788999999999999999999 9999999
Q ss_pred -ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 -KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++....+.+.+++.+ ..+||+++++.+|++.
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~ 211 (220)
T cd03265 162 LDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII 211 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEE
Confidence 78889999999998776545666633 3478999999999974
No 40
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.82 E-value=5.4e-21 Score=203.49 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=133.8
Q ss_pred ecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------cc----ccceeEeeecC
Q 007511 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EE----KNIVSHLTEAP 351 (601)
Q Consensus 289 g~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~----~~~i~~v~qs~ 351 (601)
.||...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. .. ++.++|++|.+
T Consensus 2 ~~~~~~~l~~v-s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KTGGKKGVNDA-DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred ccCCceeEEee-EEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 45667788999 99999998766 999999999999999999999999541 11 56899999988
Q ss_pred C--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 352 V--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
. |++| .+++.+...+.+ ..++++.+||.. .++++.+|||||+|||+|||+| +|++++|
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 6 7777 787765322111 257899999976 7889999999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..++..+..+.+.|++++ ..+||++++|.+|++..
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~ 210 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ 210 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe
Confidence 89999999999998876557777744 35799999999999843
No 41
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.82 E-value=1.6e-20 Score=186.67 Aligned_cols=167 Identities=23% Similarity=0.315 Sum_probs=129.4
Q ss_pred EEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------c---------cc
Q 007511 283 FVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------E---------EK 341 (601)
Q Consensus 283 lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------~---------~~ 341 (601)
+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. . .+
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~-s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGV-SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred EeeeEEEecCCCcceeEEeee-EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence 3455566654 5799999 99999997655 999999999999999999999999541 1 13
Q ss_pred cceeEeeecCC--CCCc-eeeeeeecccc---------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 342 NIVSHLTEAPV--PGTT-LGIVRVEGVLP---------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT-~~~i~~~~~l~---------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
+.+++++|.+. ++.| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|++| +|++
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKI 161 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCE
Confidence 46899999865 5656 66665432111 1146788899976 6778999999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeeccee
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKT 450 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki 450 (601)
++| |+..+..+..+++....+.+.+++.++ .+||++++|++|++
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 162 ILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999 888999999999988764366666322 37899999998863
No 42
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.82 E-value=1.3e-20 Score=185.61 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=128.8
Q ss_pred EeEeecCC-ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------ccccceeEeeecC--
Q 007511 285 SAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------EEKNIVSHLTEAP-- 351 (601)
Q Consensus 285 Sa~kg~G~-~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------~~~~~i~~v~qs~-- 351 (601)
++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++|++|.+
T Consensus 4 ~l~~~~~~~~~~l~~v-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~ 82 (205)
T cd03226 4 NISFSYKKGTEILDDL-SLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDY 82 (205)
T ss_pred cEEEEeCCcCceeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhh
Confidence 34455655 6799999 99999997655 999999999999999999999999651 1235689999985
Q ss_pred -CCCCc-eeeeeeecccc-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchH
Q 007511 352 -VPGTT-LGIVRVEGVLP-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHS 414 (601)
Q Consensus 352 -~pgtT-~~~i~~~~~l~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~ 414 (601)
....| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|++| +|++++| |+..+
T Consensus 83 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 162 (205)
T cd03226 83 QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNM 162 (205)
T ss_pred hhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHH
Confidence 23334 77765432111 1256788999976 7788999999999999999999 9999999 88899
Q ss_pred HHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeeccee
Q 007511 415 IHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKT 450 (601)
Q Consensus 415 ~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki 450 (601)
..+..+++....+ +.+++.++ .+||++++|++|++
T Consensus 163 ~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 163 ERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999987655 66666433 47899999999875
No 43
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.82 E-value=3.5e-21 Score=179.85 Aligned_cols=173 Identities=21% Similarity=0.243 Sum_probs=139.7
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc---------------------
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD--------------------- 337 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i--------------------- 337 (601)
.+.+.+..+.||..++|+.+ ++....|+| .+||.+|+||||||++|.-+..|..|.+
T Consensus 6 ~l~v~dlHK~~G~~eVLKGv-SL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYGEHEVLKGV-SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhcccchhhcce-eeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 45667888999999999999 888888875 5599999999999999999999998844
Q ss_pred ----cccccceeEeeecCC--CCCc-eeeeeee-cc-c--c------chhhhhccCCCcC-cCCccCCCCHHHHHHhccc
Q 007511 338 ----GEEKNIVSHLTEAPV--PGTT-LGIVRVE-GV-L--P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNIN 399 (601)
Q Consensus 338 ----~~~~~~i~~v~qs~~--pgtT-~~~i~~~-~~-l--~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~ia 399 (601)
...+.+.+++||+.. .++| ++|+... .. + . ....+++..||.+ .+.++..||||||||++||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 223456789999876 7788 6665321 00 0 0 1256899999987 7889999999999999999
Q ss_pred ccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeecceecchH
Q 007511 400 KEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKTENAC 454 (601)
Q Consensus 400 raL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki~~a~ 454 (601)
||| +|+++++ ||...-.+...++.++.+ |.|++ ++...++.++.+|+|.+++-.
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 999 9999998 788888888999998888 77776 334577899999999997643
No 44
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.82 E-value=1.3e-20 Score=196.84 Aligned_cols=169 Identities=17% Similarity=0.234 Sum_probs=136.1
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLT 348 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~ 348 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++|++
T Consensus 5 i~~~~l~~~~~~~~~l~~v-sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 5 IDLVGVSKSYGDKVVVNDL-SFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEEEeEEEEeCCeEEEcce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 5567888888888899999 99999997655 999999999999999999999999652 1246799999
Q ss_pred ecCC--CCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 349 EAPV--PGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
|.+. +.+| .+++.+... ... ...+++.+|+.. .++.+..|||||+||++||++| +|++++|
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9875 5666 676653211 111 135788889876 6788999999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ |.+++. +..+||+++.|++|++.
T Consensus 164 ~gLD~~~~~~l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l~~G~i~ 214 (303)
T TIGR01288 164 TGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLESGRKI 214 (303)
T ss_pred cCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 888999999999988665 667763 33589999999999974
No 45
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.82 E-value=6.3e-21 Score=199.13 Aligned_cols=161 Identities=16% Similarity=0.216 Sum_probs=130.2
Q ss_pred ecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEeeecCC--CC
Q 007511 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLTEAPV--PG 354 (601)
Q Consensus 289 g~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~qs~~--pg 354 (601)
.|+...+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+. ..++.+++++|.+. +.
T Consensus 2 ~y~~~~~l~~v-s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 2 VYGDFKAVDGV-NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred eeCCeeEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 45666789999 99999998765 999999999999999999999999651 12456899999875 66
Q ss_pred Cc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchH
Q 007511 355 TT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHS 414 (601)
Q Consensus 355 tT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~ 414 (601)
+| .+++.+...+.+ ..++++.+|+.. .++.+..|||||+||+++|++| +|++++| |+..+
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 66 676654322111 246789999976 7888999999999999999999 9999999 89999
Q ss_pred HHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 415 IHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 415 ~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
..+..+++....+ |.+++. +..+||++++|++|++.
T Consensus 161 ~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~ 203 (302)
T TIGR01188 161 RAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDHGRII 203 (302)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999988765 667763 34589999999999984
No 46
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=2.1e-20 Score=188.53 Aligned_cols=170 Identities=21% Similarity=0.254 Sum_probs=134.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTE 349 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~q 349 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+. ..++.+++++|
T Consensus 3 l~~~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDV-SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEeEEEEECCEEeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 4456777788777899999 99999998665 999999999999999999999999541 12356899999
Q ss_pred cCC--CCCc-eeeeeeeccc-------cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 350 APV--PGTT-LGIVRVEGVL-------PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l-------~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
.+. +..| .+++.+.... .. ...+++.+|+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 161 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 875 5555 6666542111 10 145788889876 6778899999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+.+.+++.+ ..+||++++|++|++.
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 162 EPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIE 216 (239)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 88899999999998876546677643 3578999999999974
No 47
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.82 E-value=1.5e-20 Score=186.67 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=129.4
Q ss_pred EEEEeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccccc
Q 007511 282 HFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEKNI 343 (601)
Q Consensus 282 ~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~~~ 343 (601)
.+.++.+.|+. ..+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+. ..++.
T Consensus 3 ~~~~l~~~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 3 RFEQVSKAYPGGHQPALDNL-NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred EEEEEEEEecCCCeeEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 34566666743 4689999 99999997655 999999999999999999999999541 12356
Q ss_pred eeEeeecCC--CCCc-eeeeeeeccc---c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 344 VSHLTEAPV--PGTT-LGIVRVEGVL---P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 344 i~~v~qs~~--pgtT-~~~i~~~~~l---~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
+++++|.+. +..| .+++.+.... . ...++++.+|+.. .++.+..|||||+||+++|++| +|++++
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 161 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLL 161 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 899999875 5555 6766542111 1 1246788899976 6788999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeeccee
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKT 450 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki 450 (601)
| |+..+..+..+++....+ +.+++.+ ..+||++++|++|++
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 162 ADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9 788899999999887655 5666633 357899999998864
No 48
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.81 E-value=2e-20 Score=185.25 Aligned_cols=168 Identities=17% Similarity=0.266 Sum_probs=131.8
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeecC
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEAP 351 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs~ 351 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|.+|.+. ..++.+++++|.+
T Consensus 3 ~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~ 81 (213)
T cd03301 3 LENVTKRFGNVTALDDL-NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNY 81 (213)
T ss_pred EEeeEEEECCeeeeece-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecCh
Confidence 44566677777899999 99999998665 999999999999999999999999541 1234689999886
Q ss_pred C--CCCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 352 V--PGTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
. +..| .+++.+.... .. ..++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~L 161 (213)
T cd03301 82 ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL 161 (213)
T ss_pred hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 5 5555 6666542111 11 145688889876 6788999999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+.+.+++.+ ..+||+++.+++|++.
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 88899999999998876546676633 3478999999999874
No 49
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.8e-20 Score=198.90 Aligned_cols=169 Identities=18% Similarity=0.234 Sum_probs=134.5
Q ss_pred EEEEeEeecC----CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccc
Q 007511 282 HFVSAVKNWG----LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEK 341 (601)
Q Consensus 282 ~lvSa~kg~G----~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~ 341 (601)
.+.++.+.|+ ...+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+. ..+
T Consensus 3 ~i~~l~~~y~~~~~~~~il~~v-sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 3 ELKNISKVFPQGGRTIHALNNV-SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEeEEEEeCCCCCceEEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 4556667776 35799999 99999998655 999999999999999999999999541 124
Q ss_pred cceeEeeecCC--CCCc-eeeeeeecccc---c------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 342 NIVSHLTEAPV--PGTT-LGIVRVEGVLP---A------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT-~~~i~~~~~l~---~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
+.+++++|.+. +..| .+++.+..... . ..++++.+||.. .++.+..|||||+||++||++| +|++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~i 161 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 67999999875 5556 77765432111 1 146788899976 6788999999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
++| |+..+..+..+++....+.+.+++.+ ..+||++++|++|++.
T Consensus 162 LlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~ 220 (343)
T PRK11153 162 LLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLV 220 (343)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999 88899999999998876556677743 3579999999999974
No 50
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=2.2e-20 Score=185.97 Aligned_cols=168 Identities=21% Similarity=0.209 Sum_probs=131.2
Q ss_pred EEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------ccccceeEeeec
Q 007511 283 FVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------EEKNIVSHLTEA 350 (601)
Q Consensus 283 lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------~~~~~i~~v~qs 350 (601)
+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.+++++|.
T Consensus 3 ~~~l~~~~~~~~~~~~il~~v-s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~ 81 (220)
T cd03293 3 VRNVSKTYGGGGGAVTALEDI-SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQ 81 (220)
T ss_pred EEEEEEEcCCCCcceEEEece-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecc
Confidence 3456667765 6799999 99999997655 999999999999999999999999652 234578999998
Q ss_pred CC--CCCc-eeeeeeecccc---------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe------
Q 007511 351 PV--PGTT-LGIVRVEGVLP---------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------ 409 (601)
Q Consensus 351 ~~--pgtT-~~~i~~~~~l~---------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------ 409 (601)
+. +..| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~ 161 (220)
T cd03293 82 DALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA 161 (220)
T ss_pred cccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 65 5455 66665421111 1246788899976 6778899999999999999999 9999999
Q ss_pred -ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEee--cceec
Q 007511 410 -KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLH--MGKTE 451 (601)
Q Consensus 410 -D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~--~Gki~ 451 (601)
|+..+..+..+++....+.+.+++.+ ..+||+++.|+ +|++.
T Consensus 162 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~ 213 (220)
T cd03293 162 LDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213 (220)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEE
Confidence 89999999999998765546666633 35789999998 68874
No 51
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.81 E-value=2.8e-20 Score=200.40 Aligned_cols=169 Identities=18% Similarity=0.294 Sum_probs=137.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEe
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v 347 (601)
+.+.++.++|+...+++++ ++.+.+|+++. +|+|||||||||++|+|+++|.+|.+ ...++.++++
T Consensus 4 L~~~nls~~y~~~~vL~~v-s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 4 IDVSDLSVEFGDTTVLDGV-DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred EEEeeEEEEECCEEEEEee-EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 4567788889888999999 99999998765 99999999999999999999999954 1235679999
Q ss_pred eecCC--CCCc-eeeeeeec-----ccc---c-----hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 348 TEAPV--PGTT-LGIVRVEG-----VLP---A-----QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~-----~l~---~-----~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
+|.+. +.+| .+++.+.. .+. . ..++++.+|+.. .++.+.+||+||+||++||++| +|++++
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL 162 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL 162 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99865 5566 66654321 111 1 156788999976 7888999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
| |+..+..+..+++.+..+ +.+++.++ .+||+++.|++|++.
T Consensus 163 LDEPtsgLD~~~~~~l~~lL~~l~~~-g~TIIivsHdl~~~~~~adrii~l~~G~iv 218 (402)
T PRK09536 163 LDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRVR 218 (402)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9 888899999999988764 66776433 689999999999974
No 52
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.2e-21 Score=182.62 Aligned_cols=167 Identities=20% Similarity=0.248 Sum_probs=137.2
Q ss_pred EEEEeEeecCCcc-ccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-----------cccccceeEee
Q 007511 282 HFVSAVKNWGLKS-LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-----------GEEKNIVSHLT 348 (601)
Q Consensus 282 ~lvSa~kg~G~~~-LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-----------~~~~~~i~~v~ 348 (601)
.+.+..+.|+... .++++ +|..+.|+|.. +|+|||||||+|++|++++.|++|.+ ...+++||.++
T Consensus 3 ~v~~l~K~y~~~v~AvrdV-SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~ 81 (245)
T COG4555 3 EVTDLTKSYGSKVQAVRDV-SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLF 81 (245)
T ss_pred eeeehhhhccCHHhhhhhe-eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceec
Confidence 4567788888754 78888 89999998766 99999999999999999999999954 34678889888
Q ss_pred ecCC--CCCc-eeeeeeeccccch---------hhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 349 EAPV--PGTT-LGIVRVEGVLPAQ---------AKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l~~~---------~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
...- ..+| .+++.+.+.+.+. .++.+.++|.. .++.+..||.|++|||+||||| +|+++++
T Consensus 82 ~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~ 161 (245)
T COG4555 82 GERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPT 161 (245)
T ss_pred CCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCC
Confidence 3221 4466 8888876555432 57888999987 8899999999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
|...+..+.+.++....+ |.++++ +..+||+++++|.|.+
T Consensus 162 sGLDi~~~r~~~dfi~q~k~e-gr~viFSSH~m~EvealCDrvivlh~Gev 211 (245)
T COG4555 162 SGLDIRTRRKFHDFIKQLKNE-GRAVIFSSHIMQEVEALCDRVIVLHKGEV 211 (245)
T ss_pred CCccHHHHHHHHHHHHHhhcC-CcEEEEecccHHHHHHhhheEEEEecCcE
Confidence 677788889999988776 666663 4459999999999987
No 53
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=8.8e-21 Score=182.06 Aligned_cols=171 Identities=19% Similarity=0.188 Sum_probs=132.6
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCC-----C--------------cccc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRG-----G--------------DGEE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G-----~--------------i~~~ 340 (601)
+...+....||...++++| ++.+.++.|.. +||+||||||||++|........| . +.+.
T Consensus 8 ~~~~~l~~yYg~~~aL~~i-~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 8 IEVRDLNLYYGDKHALKDI-NLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred eEecceeEEECchhhhccC-ceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence 4556777889999999999 99999888755 999999999999999987765543 1 2457
Q ss_pred ccceeEeeecCC--CCCceeeeeeeccccch---------hhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc--
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVLPAQ---------AKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l~~~---------~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
|+.+|+|||.|. |.+-.+|+.+...+.+. .+.+...+|-+ .++.+..||||||||+.|||+|
T Consensus 87 Rr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv 166 (253)
T COG1117 87 RRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred HHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc
Confidence 889999999987 53338998876544332 22233334422 5667788999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecchH
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTENAC 454 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~a~ 454 (601)
+|++++| ||..+..+.+++..+..+ .|++.+ .+.+|+...++.|++.+.+
T Consensus 167 ~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~--yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 167 KPEVLLMDEPTSALDPISTLKIEELITELKKK--YTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred CCcEEEecCcccccCchhHHHHHHHHHHHHhc--cEEEEEeCCHHHHHHHhHhhhhhcccEEEEEc
Confidence 9999999 899999999999998855 566644 4577888888899885543
No 54
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.81 E-value=4.3e-20 Score=188.42 Aligned_cols=172 Identities=20% Similarity=0.247 Sum_probs=137.0
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------ccccceeEeeecC
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------EEKNIVSHLTEAP 351 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------~~~~~i~~v~qs~ 351 (601)
.+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++|++|.+
T Consensus 12 ~l~i~~l~~~~~~~~il~~i-sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 90 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQL-DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDA 90 (257)
T ss_pred cEEEEEEEEEECCcceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCc
Confidence 36677888888878899999 99999997655 999999999999999999999999652 2345689999986
Q ss_pred C--CCCc-eeeeeeeccc---cchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHH
Q 007511 352 V--PGTT-LGIVRVEGVL---PAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSI 415 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l---~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~ 415 (601)
. +..| .+++.+.... ....++++.+|+.. .++.+..|||||+||++||++| +|++++| |+....
T Consensus 91 ~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~ 170 (257)
T PRK11247 91 RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170 (257)
T ss_pred cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 5 5455 7776543111 11256788899976 6788999999999999999999 9999999 888899
Q ss_pred HHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 416 HIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 416 ~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
.+..+++....+.+.+++.+ ..+||+++.+++|++..
T Consensus 171 ~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 171 EMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999988765546666633 35789999999998843
No 55
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.2e-20 Score=177.97 Aligned_cols=167 Identities=24% Similarity=0.286 Sum_probs=127.2
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEee
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHLT 348 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v~ 348 (601)
...+.+.....+.+++++ ++...+|++.. +||||+||||||+.|+|...|++|.+ .+..+.-+.++
T Consensus 3 ~a~nls~~~~Gr~ll~~v-sl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlp 81 (259)
T COG4559 3 RAENLSYSLAGRRLLDGV-SLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLP 81 (259)
T ss_pred eeeeeEEEeecceeccCc-ceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcc
Confidence 344556667788999999 99999998755 99999999999999999999999954 23344557777
Q ss_pred ecCC---CCCceeeeeeeccccc------------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--------CC
Q 007511 349 EAPV---PGTTLGIVRVEGVLPA------------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--------KP 404 (601)
Q Consensus 349 qs~~---pgtT~~~i~~~~~l~~------------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--------~P 404 (601)
|+.. |.+..+.+.+.. ... ....+...++.. ..+....|||||||||.+||.| .+
T Consensus 82 Q~s~laFpFtv~eVV~mGr-~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 82 QNSSLAFPFTVQEVVQMGR-IPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred cCcccccceEHHHHHHhcc-cccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 7654 544466655431 111 134566666665 5677889999999999999998 34
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki~ 451 (601)
+.++| |..++..+..+.|.++.++ ..++ .+..|||+++.||+|++.
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g-~~V~~VLHDLNLAA~YaDrivll~~Grv~ 220 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREG-GAVLAVLHDLNLAAQYADRIVLLHQGRVI 220 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcC-CcEEEEEccchHHHHhhheeeeeeCCeEe
Confidence 57777 8888999999999999884 4444 456799999999999983
No 56
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=2.1e-20 Score=188.48 Aligned_cols=157 Identities=15% Similarity=0.220 Sum_probs=130.5
Q ss_pred cchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------------cccccceeEeeecCC--CCCc
Q 007511 296 IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------------GEEKNIVSHLTEAPV--PGTT 356 (601)
Q Consensus 296 L~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------------~~~~~~i~~v~qs~~--pgtT 356 (601)
+.++ ++.++.|+|++ +|-+|||||||+++|.+++.|+.|.+ ...++++++|||+.. |+.|
T Consensus 44 v~~~-sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 44 VNDA-SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eccc-eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 3455 77888899877 99999999999999999999999965 234567999999987 9988
Q ss_pred -eeeeeeeccccch---------hhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHH
Q 007511 357 -LGIVRVEGVLPAQ---------AKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIH 416 (601)
Q Consensus 357 -~~~i~~~~~l~~~---------~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~ 416 (601)
++|+.|...+.+. .+.+++.||.. .++++++|||||||||.+|||| +|+++++ ||--+..
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~ 202 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE 202 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence 8998887655442 67899999998 8899999999999999999999 9999999 6766777
Q ss_pred HHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecch
Q 007511 417 IAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTENA 453 (601)
Q Consensus 417 l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~a 453 (601)
+.+-+..+..+...|++++ .++.||+..|.+|++.+.
T Consensus 203 mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~ 246 (386)
T COG4175 203 MQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQV 246 (386)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEe
Confidence 7766666666667788854 468999999999998553
No 57
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=3.7e-21 Score=182.80 Aligned_cols=168 Identities=17% Similarity=0.196 Sum_probs=141.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------------cccccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-------------GEEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-------------~~~~~~i~~ 346 (601)
+...+..|.|+.+.+.+++ ++.+.+|+++. +|||||||||.++++.|+.+|++|.+ ...+..+||
T Consensus 5 L~a~~l~K~y~kr~Vv~~V-sl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 5 LVAENLAKSYKKRKVVNDV-SLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred EEehhhhHhhCCeeeeeee-eEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccc
Confidence 4567888999999999999 99999998766 99999999999999999999999955 345667999
Q ss_pred eeecCC--CCCc-eeeeeeeccccc-----------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 347 LTEAPV--PGTT-LGIVRVEGVLPA-----------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~l~~-----------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
++|.+. -++| .+|+........ ...+++.++|.+ .++....||||||+|+.|||+| +|+.++|
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLL 163 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILL 163 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEe
Confidence 999886 6677 677654322211 137899999998 7889999999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeeccee
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKT 450 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki 450 (601)
||-....+..+++.+... |..++ +...+|||.++++.|++
T Consensus 164 DEPFAGVDPiaV~dIq~iI~~L~~r-giGvLITDHNVREtL~i~dRaYIi~~G~v 217 (243)
T COG1137 164 DEPFAGVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKV 217 (243)
T ss_pred cCCccCCCchhHHHHHHHHHHHHhC-CceEEEccccHHHHHhhhheEEEEecCeE
Confidence 899999999999998876 66565 44568999999999997
No 58
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.81 E-value=2.5e-20 Score=185.18 Aligned_cols=168 Identities=17% Similarity=0.177 Sum_probs=132.5
Q ss_pred EEEEeEeecCCc----cccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc-----------cccccee
Q 007511 282 HFVSAVKNWGLK----SLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVS 345 (601)
Q Consensus 282 ~lvSa~kg~G~~----~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~ 345 (601)
.+.++.+.|+.. .+++++ ++.+.+|+++ ++|+||||||||+++|+|+.+|++|.+. ..++.++
T Consensus 3 ~~~~v~~~~~~~~~~~~il~~~-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 3 TADALTKRFRDVKKTVQAVDGV-SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred EEEEEEEecCCCCccceeecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 456677777665 799999 8999999765 5999999999999999999999999541 2245689
Q ss_pred EeeecCC--CCCc-eeeeeeeccc---c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVL---P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l---~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
+++|.+. ++.| .+++.+.... . ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD 161 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD 161 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999875 5556 6666542111 1 1146788999976 6788999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ +.+++.+ ..+||+++.|++|++.
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i~ 215 (218)
T cd03266 162 EPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRVV 215 (218)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEEECCEEe
Confidence 888899999999987654 6677643 3578999999999874
No 59
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.81 E-value=6.6e-20 Score=185.20 Aligned_cols=169 Identities=21% Similarity=0.236 Sum_probs=131.8
Q ss_pred EEEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccccce
Q 007511 282 HFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEKNIV 344 (601)
Q Consensus 282 ~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~~~i 344 (601)
.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.+
T Consensus 3 ~~~~l~~~~~~~~~il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 3 EVENLSKVYPNGKQALKNI-NLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred EEEeeeeecCCCcceeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 3456667776 66799999 99999997655 999999999999999999999999541 124568
Q ss_pred eEeeecCC--CCCc-eeeeeeecc-----------c-cc-----hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc-
Q 007511 345 SHLTEAPV--PGTT-LGIVRVEGV-----------L-PA-----QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 345 ~~v~qs~~--pgtT-~~~i~~~~~-----------l-~~-----~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++++|.+. +.+| .+++.+... . .. ..++++.+|+.. .++.+..||+||+||++||++|
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 161 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALA 161 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999865 5555 666643210 0 00 145788889875 6778999999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+.....+..+++....+.+.+++. +..+||+++.|++|++.
T Consensus 162 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 162 QQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999 8888999999999876654666663 33589999999999874
No 60
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=3e-20 Score=183.70 Aligned_cols=163 Identities=23% Similarity=0.250 Sum_probs=127.0
Q ss_pred EeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEeee
Q 007511 285 SAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHLTE 349 (601)
Q Consensus 285 Sa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v~q 349 (601)
++.+.|+. ..+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+. ..++.++|++|
T Consensus 4 ~l~~~~~~~~~~il~~v-s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (211)
T cd03225 4 NLSFSYPDGARPALDDI-SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQ 82 (211)
T ss_pred eEEEecCCCCeeeecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEec
Confidence 45566665 6789999 99999997655 999999999999999999999999541 12356899999
Q ss_pred cC---CCCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 350 AP---VPGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 350 s~---~pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
.+ .+..| .+++.+... ... ..++++.+|+.. .++.+..|||||+||+++|++| +|++++|
T Consensus 83 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 162 (211)
T cd03225 83 NPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT 162 (211)
T ss_pred ChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 86 35555 666654211 111 145788889875 6788999999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecce
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGK 449 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gk 449 (601)
|+..+..+..+++....+ +.+++.++ .+||++++|++|+
T Consensus 163 ~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 163 AGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 889999999999987765 66776443 4689999998774
No 61
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.80 E-value=4e-20 Score=185.48 Aligned_cols=167 Identities=16% Similarity=0.204 Sum_probs=131.5
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------c-cccceeEee
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------E-EKNIVSHLT 348 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~-~~~~i~~v~ 348 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. . .++.+++++
T Consensus 3 ~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (232)
T cd03218 3 AENLSKRYGKRKVVNGV-SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLP 81 (232)
T ss_pred EEEEEEEeCCEEeeccc-eeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEec
Confidence 45667777777899999 89999997655 999999999999999999999999541 1 124589999
Q ss_pred ecCC--CCCc-eeeeeeecccc---------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 349 EAPV--PGTT-LGIVRVEGVLP---------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l~---------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
|.+. ++.| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 82 QEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred CCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9875 6656 66665421111 0146788889876 6788999999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ +.+++.+ ..+||++++|++|++.
T Consensus 162 ~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 162 AGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKVL 212 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 888899999999887654 6666633 3578999999999974
No 62
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.80 E-value=2.7e-20 Score=194.26 Aligned_cols=168 Identities=17% Similarity=0.265 Sum_probs=136.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLT 348 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~ 348 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+..|++|.+. ..++.++|++
T Consensus 3 l~~~~l~~~~~~~~~l~~i-s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEV-SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEECCEEEEEEe-EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 4567778888888899999 99999998766 999999999999999999999999551 2345799999
Q ss_pred ecCC--CCCc-eeeeeeeccc---c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 349 EAPV--PGTT-LGIVRVEGVL---P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l---~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
|.+. +++| .+++.+...+ . ...++++.+|+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9875 6766 7776543211 1 1256788899986 7888999999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++... + +.+++. +..+||++++|++|++.
T Consensus 162 ~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~ 211 (301)
T TIGR03522 162 TGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINKGKIV 211 (301)
T ss_pred ccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 8999999999999875 3 466663 34689999999999984
No 63
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.80 E-value=3.8e-20 Score=186.13 Aligned_cols=167 Identities=23% Similarity=0.322 Sum_probs=130.5
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------c-cccceeEee
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------E-EKNIVSHLT 348 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~-~~~~i~~v~ 348 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|.+|.+. . .+..+++++
T Consensus 3 ~~~l~~~~~~~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 81 (236)
T cd03219 3 VRGLTKRFGGLVALDDV-SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTF 81 (236)
T ss_pred eeeeEEEECCEEEecCc-eEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence 34555667666799999 99999997655 999999999999999999999999541 0 134589999
Q ss_pred ecCC--CCCc-eeeeeeeccc--------------c-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--C
Q 007511 349 EAPV--PGTT-LGIVRVEGVL--------------P-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--K 403 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l--------------~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~ 403 (601)
|.+. +++| .+++.+.... . ...++++.+|+.. .++.+..|||||+||+++|++| +
T Consensus 82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 161 (236)
T cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161 (236)
T ss_pred cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9865 6656 6665432110 0 1246788899976 6788999999999999999999 9
Q ss_pred CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 404 PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 404 P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
|++++| |+..+..+..+++....+ +.+++.++ .+||+++++++|++.
T Consensus 162 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~ 222 (236)
T cd03219 162 PKLLLLDEPAAGLNPEETEELAELIRELRER-GITVLLVEHDMDVVMSLADRVTVLDQGRVI 222 (236)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 999999 888899999999987654 66776443 579999999999874
No 64
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=4.7e-20 Score=185.17 Aligned_cols=169 Identities=19% Similarity=0.270 Sum_probs=132.9
Q ss_pred EEEEeEeecCCc----cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccc
Q 007511 282 HFVSAVKNWGLK----SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEK 341 (601)
Q Consensus 282 ~lvSa~kg~G~~----~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~ 341 (601)
.+.++.+.|+.. .+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+. ..+
T Consensus 3 ~~~~l~~~~~~~~~~~~il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 3 ELKNVSKVFGDTGGKVTALKDV-SLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred EEecceEEccCCCCceeeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 345666677655 799999 99999997665 999999999999999999999999541 114
Q ss_pred cceeEeeecCC--CCCc-eeeeeeecc---cc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 342 NIVSHLTEAPV--PGTT-LGIVRVEGV---LP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT-~~~i~~~~~---l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
+.+++++|.+. ++.| .+++.+... .. ...++++.+|+.. .++.+..||+||+||+++|+++ +|++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 161 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKV 161 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 56899999875 6556 666654211 11 1246788889976 6778999999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
++| |+..+..+..+++....+.+.+++.+ ..+||+++.|++|++.
T Consensus 162 llLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (233)
T cd03258 162 LLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220 (233)
T ss_pred EEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999 88899999999998776546677643 3578999999999984
No 65
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5.6e-20 Score=190.62 Aligned_cols=170 Identities=17% Similarity=0.206 Sum_probs=133.4
Q ss_pred EEEEEeEeecCC-----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------c-------cc
Q 007511 281 LHFVSAVKNWGL-----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-------G-------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~-----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-------~-------~~ 340 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|.+|.+ . ..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNV-NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEECCCCCccccceeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 445666777753 3699999 99999997555 99999999999999999999999954 1 22
Q ss_pred ccceeEeeecCC---CCCc-eeeeeeeccc---cc------hhhhhccCCCc--C-cCCccCCCCHHHHHHhcccccc--
Q 007511 341 KNIVSHLTEAPV---PGTT-LGIVRVEGVL---PA------QAKLFDTPGLL--H-PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~---pgtT-~~~i~~~~~l---~~------~~~llDtpGL~--~-~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
++.++|++|.+. ...| .+++.+.... .. ..++++.+||. . .++.+..|||||+||++||++|
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 457899999862 2334 7776543211 11 14678899996 3 6788999999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++....+.+.|++.+ ..+||++++|++|++.
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~ 224 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 89999999999998876546777743 3579999999999974
No 66
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.80 E-value=4.7e-20 Score=182.71 Aligned_cols=166 Identities=22% Similarity=0.248 Sum_probs=128.7
Q ss_pred EEEEeEeec-CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccccce
Q 007511 282 HFVSAVKNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEKNIV 344 (601)
Q Consensus 282 ~lvSa~kg~-G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~~~i 344 (601)
.+.++.+.| +...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|+.|.+. ..++.+
T Consensus 3 ~~~~l~~~~~~~~~il~~i-s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 3 EFHNVSKAYPGGVAALHDV-SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEeeeEEeCCCceeecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 345666677 456799999 99999997655 999999999999999999999999541 123568
Q ss_pred eEeeecCC--CCCc-eeeeeeecc---cc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 345 SHLTEAPV--PGTT-LGIVRVEGV---LP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 345 ~~v~qs~~--pgtT-~~~i~~~~~---l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
++++|.+. +..| .+++.+... .. ...++++.+|+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllL 161 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLA 161 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 99998865 5555 666554211 11 1146788889876 6778899999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecce
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGK 449 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gk 449 (601)
|+..+..+..+++....+ +.+++.++ .+||++++|++|+
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 162 DEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 899999999999987655 66666433 4689999998774
No 67
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=3.8e-20 Score=182.92 Aligned_cols=167 Identities=17% Similarity=0.246 Sum_probs=130.7
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc--------ccccceeEeeecCC-
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG--------EEKNIVSHLTEAPV- 352 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~--------~~~~~i~~v~qs~~- 352 (601)
+.++.+.|+...+++++ ++.+.+|+++ ++|+||||||||+++|+|+.+|++|.+. ..++.+++++|.+.
T Consensus 3 ~~~l~~~~~~~~~l~~v-~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~ 81 (210)
T cd03269 3 VENVTKRFGRVTALDDI-SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGL 81 (210)
T ss_pred EEEEEEEECCEEEEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcC
Confidence 44566677767799999 9999999865 5999999999999999999999999652 12456899999865
Q ss_pred -CCCc-eeeeeeecccc---------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------cc
Q 007511 353 -PGTT-LGIVRVEGVLP---------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KA 411 (601)
Q Consensus 353 -pgtT-~~~i~~~~~l~---------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~ 411 (601)
++.| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++| |+
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~ 161 (210)
T cd03269 82 YPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161 (210)
T ss_pred CcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 5656 66654421111 1146788889876 6778899999999999999999 9999999 88
Q ss_pred chHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 412 GHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 412 ~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
.....+..+++....+ +.+++. +..+||+++.+++|++.
T Consensus 162 ~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 162 VNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 8899999999887655 566663 33578999999999874
No 68
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.80 E-value=4.2e-20 Score=182.35 Aligned_cols=167 Identities=20% Similarity=0.274 Sum_probs=131.1
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeecC
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEAP 351 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs~ 351 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|.+|.+. ..++.+++++|.+
T Consensus 3 ~~~l~~~~~~~~~l~~~-~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (208)
T cd03268 3 TNDLTKTYGKKRVLDDI-SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAP 81 (208)
T ss_pred EEEEEEEECCeEeEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCC
Confidence 45666677767899999 99999997665 999999999999999999999999541 1245689999986
Q ss_pred C--CCCc-eeeeeeeccc---c--chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccch
Q 007511 352 V--PGTT-LGIVRVEGVL---P--AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGH 413 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l---~--~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~ 413 (601)
. +..| .+++.+.... . ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++| |+..
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~ 161 (208)
T cd03268 82 GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161 (208)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHH
Confidence 5 5556 6666442211 1 1256788889876 6778999999999999999999 9999999 7888
Q ss_pred HHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 414 SIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 414 ~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+..+..+++....+ +.+++.+ ..+||+++.|++|++.
T Consensus 162 ~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i~ 205 (208)
T cd03268 162 IKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLI 205 (208)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 99999999987664 5666633 3579999999999874
No 69
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.80 E-value=1.2e-19 Score=180.81 Aligned_cols=169 Identities=21% Similarity=0.204 Sum_probs=129.8
Q ss_pred EEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc---------------c-
Q 007511 282 HFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE---------------E- 340 (601)
Q Consensus 282 ~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~---------------~- 340 (601)
.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|..|.+.. .
T Consensus 3 ~~~~v~~~~~~~~~~~~~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 3 KCENLGKRYQEGKLDTRVLKGV-SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEeeeEEccCCCcceEeEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 34566666753 4689999 99999997665 9999999999999999999999995410 1
Q ss_pred ccceeEeeecCC--CCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 341 KNIVSHLTEAPV--PGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++.++|++|.+. +..| .+++.+... ... ..++++.+|+.. .++.+..||+||+||+++|++| +|+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 246899999865 5555 676654211 111 146788899976 6788899999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
+++| |+.....+..+++....+.+.+++.++ ..+|++++|++|++.
T Consensus 162 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 162 LVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999 888899999999987665456666332 347999999998763
No 70
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.2e-19 Score=179.39 Aligned_cols=166 Identities=20% Similarity=0.179 Sum_probs=127.8
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeecC
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEAP 351 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs~ 351 (601)
+.++.+.|+...+ ++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.+++++|.+
T Consensus 3 ~~~l~~~~~~~~~--~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 79 (211)
T cd03298 3 LDKIRFSYGEQPM--HF-DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQEN 79 (211)
T ss_pred EEeEEEEeCCEec--ce-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEeccc
Confidence 3455556654332 67 88888997655 999999999999999999999999541 1235689999987
Q ss_pred C--CCCc-eeeeeeeccc--c-------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 352 V--PGTT-LGIVRVEGVL--P-------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l--~-------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
. +++| .+++.+.... . ...++++..|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 80 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~L 159 (211)
T cd03298 80 NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAAL 159 (211)
T ss_pred ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 6 6666 6776543211 0 1246788889876 6778999999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++....+.+.+++.+ ..+||++++|++|++.
T Consensus 160 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 208 (211)
T cd03298 160 DPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208 (211)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEe
Confidence 88889999999998766546676643 3579999999999874
No 71
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=6.4e-20 Score=184.97 Aligned_cols=168 Identities=23% Similarity=0.278 Sum_probs=131.0
Q ss_pred EEEeEeecCC-ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------cccccee
Q 007511 283 FVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEKNIVS 345 (601)
Q Consensus 283 lvSa~kg~G~-~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~~~i~ 345 (601)
+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++
T Consensus 3 ~~~l~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 81 (241)
T cd03256 3 VENLSKTYPNGKKALKDV-SLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIG 81 (241)
T ss_pred EeeEEEecCCccEEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccE
Confidence 4456667765 6799999 99999997655 999999999999999999999998541 1235689
Q ss_pred EeeecCC--CCCc-eeeeeeecc------------ccc-----hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGV------------LPA-----QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~------------l~~-----~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
+++|.+. +..| .+++.+... ... ..++++.+|+.. .++.+..||+||+||++||++|
T Consensus 82 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 161 (241)
T cd03256 82 MIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQ 161 (241)
T ss_pred EEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 9999865 5555 666543210 001 145788889875 6778999999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++....+.+.+++.++ .+||++++|++|++.
T Consensus 162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 162 QPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 888999999999987765466766433 489999999999874
No 72
>PRK10908 cell division protein FtsE; Provisional
Probab=99.80 E-value=7.8e-20 Score=182.34 Aligned_cols=168 Identities=21% Similarity=0.222 Sum_probs=130.9
Q ss_pred EEEEeEeec-CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccccce
Q 007511 282 HFVSAVKNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEKNIV 344 (601)
Q Consensus 282 ~lvSa~kg~-G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~~~i 344 (601)
.+.++.+.| +...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.+
T Consensus 3 ~~~~l~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 3 RFEHVSKAYLGGRQALQGV-TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEeeEEEecCCCeEEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 345666677 556799999 99999998665 999999999999999999999999541 024568
Q ss_pred eEeeecCC--CCCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 345 SHLTEAPV--PGTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 345 ~~v~qs~~--pgtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
+|++|.+. +..| .+++.+.... .. ..++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLA 161 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999875 5556 6766543111 11 136788889876 6778899999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ +.+++.+ ..+||++++|++|++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 162 DEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 788888999999987655 5666643 3578999999999873
No 73
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=7.1e-20 Score=188.64 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=133.7
Q ss_pred EEEEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeE
Q 007511 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~ 346 (601)
+.+.++.+.|+ ...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|++|.+. ..++.++|
T Consensus 5 l~~~~l~~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 5 IEVEDLHFRYKDGTKALKGL-SLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred EEEEEEEEEeCCCCeeeeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 44667777774 45699999 89999997655 999999999999999999999999551 12456899
Q ss_pred eeecC---CCCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 347 LTEAP---VPGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 347 v~qs~---~pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
++|.+ .+..| .+++.+... ... ...+++.+|+.. .++.+..|||||+||++||++| +|++++|
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 163 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD 163 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99986 24445 777654311 111 146788889976 7888999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ +.|++.+ ..+||++++|++|++.
T Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~ 217 (274)
T PRK13647 164 EPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVL 217 (274)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999988765 6777743 3589999999999974
No 74
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=7.3e-20 Score=185.00 Aligned_cols=168 Identities=18% Similarity=0.246 Sum_probs=131.5
Q ss_pred EEEeEeecCC-ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEee
Q 007511 283 FVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHLT 348 (601)
Q Consensus 283 lvSa~kg~G~-~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v~ 348 (601)
+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+. ..++.++|++
T Consensus 3 ~~~l~~~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (242)
T cd03295 3 FENVTKRYGGGKKAVNNL-NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVI 81 (242)
T ss_pred EEEEEEEeCCcceEeeee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEc
Confidence 3456667766 6799999 99999997665 999999999999999999999999541 1235689999
Q ss_pred ecCC--CCCc-eeeeeeeccc---c------chhhhhccCCCcC---cCCccCCCCHHHHHHhcccccc--CCCEEEe--
Q 007511 349 EAPV--PGTT-LGIVRVEGVL---P------AQAKLFDTPGLLH---PNQITTRLTREEQKLVNINKEL--KPRTYRI-- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l---~------~~~~llDtpGL~~---~~~~~~~LSgGe~qrv~iaraL--~P~lllL-- 409 (601)
|.+. ++.| .+++.+...+ . ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 161 (242)
T cd03295 82 QQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDE 161 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9865 5556 6776542111 1 1246788889873 5778899999999999999999 9999999
Q ss_pred -----ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 -----KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -----D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++....+.+.+++.+ ..+||++++|++|++.
T Consensus 162 Pt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (242)
T cd03295 162 PFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215 (242)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 78888999999998766546666633 3578999999999984
No 75
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.79 E-value=5.7e-20 Score=172.27 Aligned_cols=152 Identities=22% Similarity=0.202 Sum_probs=121.8
Q ss_pred hhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEeeecCC--CCCc-eeeeeeecc-
Q 007511 301 DLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLTEAPV--PGTT-LGIVRVEGV- 365 (601)
Q Consensus 301 ~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~qs~~--pgtT-~~~i~~~~~- 365 (601)
++.+..|+ ++++|++|+|||||+|.|+|+..|.+|.+ ....+-++++||... .+.| ..|+.+...
T Consensus 19 dl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P 98 (231)
T COG3840 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP 98 (231)
T ss_pred EEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc
Confidence 44566775 56699999999999999999999999965 345567889999876 7777 666655321
Q ss_pred ---ccc-----hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHh
Q 007511 366 ---LPA-----QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEE 427 (601)
Q Consensus 366 ---l~~-----~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~ 427 (601)
+.. ...++...||.. .++.+.+|||||||||++||.| +-.+++| ||..+..+..++.....+
T Consensus 99 ~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E 178 (231)
T COG3840 99 GLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE 178 (231)
T ss_pred ccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHh
Confidence 111 145678889987 8899999999999999999999 4445555 899999999999999988
Q ss_pred cCceEEEEE-------EeecCEEEeecceecc
Q 007511 428 SSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 428 ~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
.+.|++.++ .++++++++.+|++..
T Consensus 179 ~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 179 RKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210 (231)
T ss_pred hCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence 888888554 5789999999999854
No 76
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.1e-19 Score=185.61 Aligned_cols=170 Identities=18% Similarity=0.249 Sum_probs=134.4
Q ss_pred EEEEEeEeecCC---ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 281 V~lvSa~kg~G~---~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
+.+.++.+.|+. ..+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|..|.+ ...++.+
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 5 IEVKNLTFKYKEDQEKYTLNDV-SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred EEEEeEEEEcCCCCcCeeeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 455677777753 3589999 99999997655 99999999999999999999999954 1234578
Q ss_pred eEeeecC---CCCCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 345 SHLTEAP---VPGTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 345 ~~v~qs~---~pgtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
++++|.+ +++.| .+++.+.... .. ..++++.+||.. .++.+..||+||+||++||++| +|++++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl 163 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII 163 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999986 25556 7777653211 11 256788899976 6888999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
| |+..+..+..+++....+.|.|++.++ .+||+++++++|++.
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~ 219 (279)
T PRK13650 164 LDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVE 219 (279)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 9 888899999999988765467776332 479999999999973
No 77
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.79 E-value=7.9e-20 Score=180.88 Aligned_cols=166 Identities=22% Similarity=0.285 Sum_probs=129.3
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------ccccceeEe
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIVSHL 347 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i~~v 347 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++|+
T Consensus 3 ~~~l~~~~~~~~~l~~~-s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (213)
T cd03262 3 IKNLHKSFGDFHVLKGI-DLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMV 81 (213)
T ss_pred EEEEEEEECCeEeecCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEE
Confidence 34566667767799999 99999997665 999999999999999999999999541 123568999
Q ss_pred eecCC--CCCc-eeeeeeec----cccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe--
Q 007511 348 TEAPV--PGTT-LGIVRVEG----VLPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-- 409 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~----~l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-- 409 (601)
+|.+. +..| .+++.+.. .... ..++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 161 (213)
T cd03262 82 FQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161 (213)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99875 5555 66654321 0111 145788889876 6788999999999999999999 9999999
Q ss_pred -----ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeeccee
Q 007511 410 -----KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKT 450 (601)
Q Consensus 410 -----D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki 450 (601)
|+.....+..+++....+ +.+++.+ ..+||++++|++|++
T Consensus 162 P~~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 162 PTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 788899999999987664 6666643 357899999998864
No 78
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.2e-19 Score=185.00 Aligned_cols=169 Identities=18% Similarity=0.223 Sum_probs=131.5
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-------cccceeEeeecCC-
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------EKNIVSHLTEAPV- 352 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------~~~~i~~v~qs~~- 352 (601)
.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+.. ....+++++|.+.
T Consensus 3 ~~~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~ 81 (255)
T PRK11248 3 QISHLYADYGGKPALEDI-NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGL 81 (255)
T ss_pred EEEEEEEEeCCeeeEeee-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCcc
Confidence 456677778777799999 99999997655 9999999999999999999999996521 2235789999865
Q ss_pred -CCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------cc
Q 007511 353 -PGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KA 411 (601)
Q Consensus 353 -pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~ 411 (601)
+..| .+++.+... ... ..++++.+|+.. .++.+..|||||+||+++|++| +|++++| |+
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 82 LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161 (255)
T ss_pred CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 5555 666654211 111 246788899976 6778999999999999999999 9999999 88
Q ss_pred chHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEee--cceec
Q 007511 412 GHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLH--MGKTE 451 (601)
Q Consensus 412 ~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~--~Gki~ 451 (601)
..+..+..+++....+.+.+++.+ ..+||++++|+ +|++.
T Consensus 162 ~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~ 210 (255)
T PRK11248 162 FTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEE
Confidence 899999999998755446666633 35789999998 48763
No 79
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.79 E-value=1.6e-19 Score=181.88 Aligned_cols=169 Identities=20% Similarity=0.283 Sum_probs=130.9
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEeee
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLTE 349 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~q 349 (601)
.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ...+.+++++|
T Consensus 3 ~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 3 EVAGLSFAYGARRALDDV-SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred EEEeeEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCC
Confidence 345666777767799999 99999998665 999999999999999999999999541 11246899998
Q ss_pred cCC--CCCc-eeeeeeecccc---------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 350 APV--PGTT-LGIVRVEGVLP---------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l~---------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
.+. +..| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 82 QPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred CCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 864 5555 66654321111 1146788889876 6788999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++....+.+.+++.++ ..||++++|++|++.
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~ 211 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVL 211 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEE
Confidence 889999999999987654356666221 349999999999974
No 80
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=5.7e-20 Score=181.81 Aligned_cols=166 Identities=20% Similarity=0.216 Sum_probs=129.9
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEeeecC
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLTEAP 351 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~qs~ 351 (601)
+.++.+.|+...+++++ ++.+.+|.++++|+||+|||||+++|+|+.+|++|.+. ..++.+++++|.+
T Consensus 3 ~~~~~~~~~~~~~l~~v-s~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 81 (211)
T cd03264 3 LENLTKRYGKKRALDGV-SLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEF 81 (211)
T ss_pred EEEEEEEECCEEEEcce-eEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCC
Confidence 45566677767799999 89988885566999999999999999999999999551 1245689999987
Q ss_pred C--CCCc-eeeeeeeccc---c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 352 V--PGTT-LGIVRVEGVL---P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l---~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
. +++| .+++.+.... . ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 161 (211)
T cd03264 82 GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161 (211)
T ss_pred cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 5 6656 6666542111 1 1146788889876 6778999999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++.... +.+++.+ ..+||++++|++|++.
T Consensus 162 D~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~ 208 (211)
T cd03264 162 DPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLV 208 (211)
T ss_pred CHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 88899999999988764 3566533 3578999999999864
No 81
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.79 E-value=1e-19 Score=184.67 Aligned_cols=169 Identities=22% Similarity=0.257 Sum_probs=132.6
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------------c
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------------E 339 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------------~ 339 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+. .
T Consensus 4 l~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 4 IEVKNLVKKFHGQTVLHGI-DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EEEeceEEEECCeeeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 4456677778777899999 99999997654 999999999999999999999998541 1
Q ss_pred cccceeEeeecCC--CCCc-eeeeeeec----cccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--C
Q 007511 340 EKNIVSHLTEAPV--PGTT-LGIVRVEG----VLPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--K 403 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT-~~~i~~~~----~l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~ 403 (601)
.++.+++++|.+. ++.| .+++.+.. .... ..++++.+|+.. .++.+..||+||+||++||++| +
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 2346899999865 5555 67664311 0111 145788889976 6778999999999999999999 9
Q ss_pred CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 404 PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 404 P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
|++++| |+..+..+..+++....+ +.+++.++ .+||++++|++|++.
T Consensus 163 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~ 223 (250)
T PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIV 223 (250)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999 888899999999887655 66666443 578999999999974
No 82
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.79 E-value=1.1e-19 Score=186.62 Aligned_cols=170 Identities=17% Similarity=0.185 Sum_probs=133.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccccce
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEKNIV 344 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~~~i 344 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|+.|.+. ..++.+
T Consensus 8 l~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i 86 (269)
T PRK11831 8 VDMRGVSFTRGNRCIFDNI-SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRM 86 (269)
T ss_pred EEEeCeEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcE
Confidence 4556777788877899999 99999997555 999999999999999999999999541 013468
Q ss_pred eEeeecCC--CCCc-eeeeeeecc----ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 345 SHLTEAPV--PGTT-LGIVRVEGV----LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 345 ~~v~qs~~--pgtT-~~~i~~~~~----l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
++++|.+. +++| .+++.+... ... ...+++.+|+.. .++.+..|||||+||++||++| +|++++
T Consensus 87 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 166 (269)
T PRK11831 87 SMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166 (269)
T ss_pred EEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999865 6656 666653211 111 134688889976 6778999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
| |+..+..+..+++....+.+.+++.++ .+||+++.|++|++.
T Consensus 167 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~ 223 (269)
T PRK11831 167 FDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIV 223 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEE
Confidence 9 888899999999987665466766443 468999999999974
No 83
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.79 E-value=2.1e-19 Score=195.88 Aligned_cols=170 Identities=19% Similarity=0.280 Sum_probs=137.1
Q ss_pred EEEeEeecCC-----------ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------------
Q 007511 283 FVSAVKNWGL-----------KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------- 337 (601)
Q Consensus 283 lvSa~kg~G~-----------~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------- 337 (601)
+.++.+.|.. ...++++ ++.+.+|+++. ||.||||||||.++|+|+.+|+.|.+
T Consensus 283 V~~l~k~y~~~~~~~~~~~~~~~Av~~V-Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~ 361 (539)
T COG1123 283 VRNLSKRYGSRKGLFVRERGEVKAVDDV-SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGE 361 (539)
T ss_pred eeeeeeeeccccccccccccceeeeeee-eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccch
Confidence 4556666653 3568888 89999998665 99999999999999999999988844
Q ss_pred -cccccceeEeeecCC----CCCc-eeeeeeeccccc----------hhhhhccCCCcC--cCCccCCCCHHHHHHhccc
Q 007511 338 -GEEKNIVSHLTEAPV----PGTT-LGIVRVEGVLPA----------QAKLFDTPGLLH--PNQITTRLTREEQKLVNIN 399 (601)
Q Consensus 338 -~~~~~~i~~v~qs~~----pgtT-~~~i~~~~~l~~----------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~ia 399 (601)
...++.+.++||+++ |..| .+.+........ ..++++..|+.. .++++++|||||+||++||
T Consensus 362 ~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIA 441 (539)
T COG1123 362 LRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIA 441 (539)
T ss_pred hhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHH
Confidence 123467889999987 7777 444443221111 256799999987 7999999999999999999
Q ss_pred ccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecch
Q 007511 400 KEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTENA 453 (601)
Q Consensus 400 raL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~a 453 (601)
||| +|+++++ |+..+..+.+++..+..+.|.+.++++ .+|||+++|++|++.+.
T Consensus 442 RALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 442 RALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred HHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence 999 9999999 888999999999999988888888544 58999999999998553
No 84
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.79 E-value=7.8e-20 Score=181.07 Aligned_cols=166 Identities=20% Similarity=0.256 Sum_probs=128.6
Q ss_pred EEEeEeecCC-ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------cccccee
Q 007511 283 FVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEKNIVS 345 (601)
Q Consensus 283 lvSa~kg~G~-~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~~~i~ 345 (601)
+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.++
T Consensus 3 ~~~l~~~~~~~~~~l~~~-sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~ 81 (214)
T cd03292 3 FINVTKTYPNGTAALDGI-NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIG 81 (214)
T ss_pred EEEEEEEeCCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheE
Confidence 3456666743 5799999 99999997655 999999999999999999999999541 1235689
Q ss_pred EeeecCC--CCCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
+++|.+. +++| .+++.+.... .. ..++++.+|+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 ~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 161 (214)
T cd03292 82 VVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD 161 (214)
T ss_pred EEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999875 6556 6766543111 10 146788889876 6778899999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeeccee
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKT 450 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki 450 (601)
|+..+..+..+++....+ +.+++.++ .+||++++|++|++
T Consensus 162 EPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 162 EPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 888899999999987655 66666443 47899999988863
No 85
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.8e-19 Score=182.05 Aligned_cols=171 Identities=18% Similarity=0.239 Sum_probs=133.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEe
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v 347 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++++
T Consensus 4 l~~~~l~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDI-SVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred EEEEeEEEEeCCeeeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 5566777788777899999 99999997655 999999999999999999999999541 224568999
Q ss_pred eecCC--CCCceeeeeeecccc-----chhhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 348 TEAPV--PGTTLGIVRVEGVLP-----AQAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 348 ~qs~~--pgtT~~~i~~~~~l~-----~~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
+|.+. +.+..+++.+..... ...++++.+|+. . .++.+..||+||+||+++|+++ +|++++|
T Consensus 83 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 162 (241)
T PRK14250 83 FQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSAL 162 (241)
T ss_pred ecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99865 433366655421111 124678888996 3 5778999999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..+++....+.|.+++.+ ..+||++++|++|++..
T Consensus 163 D~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (241)
T PRK14250 163 DPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212 (241)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 78888999999998766446677633 34799999999999853
No 86
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=2.8e-19 Score=188.56 Aligned_cols=159 Identities=17% Similarity=0.228 Sum_probs=126.3
Q ss_pred ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccccceeEeeecCC----
Q 007511 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEKNIVSHLTEAPV---- 352 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~~~i~~v~qs~~---- 352 (601)
..++++| ++.+.+|+++. +|+||+|||||+++|+|+.++.+|.+. ..++.+++++|++.
T Consensus 28 ~~~l~~v-sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGV-SFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeee-EEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 4689999 99999997655 999999999999999999999988540 12457999999873
Q ss_pred CCCc-eeeeeeec----cccc------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------c
Q 007511 353 PGTT-LGIVRVEG----VLPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------K 410 (601)
Q Consensus 353 pgtT-~~~i~~~~----~l~~------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D 410 (601)
|.+| .+++.... .... ..++++.+||.. .++++++|||||+||++||+|| +|+++++ |
T Consensus 107 p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 107 PRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred CccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 6666 33332111 0111 257889999963 6889999999999999999999 9999999 8
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 411 AGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
...+..+..+++.+..+.|.++++++ .+||++++|+.|++..
T Consensus 187 ~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive 235 (327)
T PRK11308 187 VSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE 235 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 88899999999988776577777554 5899999999999854
No 87
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.79 E-value=9.3e-20 Score=181.53 Aligned_cols=167 Identities=20% Similarity=0.248 Sum_probs=129.2
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------ccccceeEee
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EEKNIVSHLT 348 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~~~~i~~v~ 348 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|+.|.+. ..++.+++++
T Consensus 3 ~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (222)
T cd03224 3 VENLNAGYGKSQILFGV-SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVP 81 (222)
T ss_pred EeeEEeecCCeeEeeee-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEec
Confidence 44566677767799999 99999997665 999999999999999999999999541 0135689999
Q ss_pred ecCC--CCCc-eeeeeeecccc--c-----hhhhhccC-CCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 349 EAPV--PGTT-LGIVRVEGVLP--A-----QAKLFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l~--~-----~~~llDtp-GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
|.+. +++| .+++.+..... . ..++++.+ ++.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 161 (222)
T cd03224 82 EGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 161 (222)
T ss_pred cccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 9875 6666 66665432111 0 13456666 4544 6778899999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ +.+++.+ ..+||+++.|++|++.
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 162 GLAPKIVEEIFEAIRELRDE-GVTILLVEQNARFALEIADRAYVLERGRVV 211 (222)
T ss_pred cCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhccEEEEeeCCeEE
Confidence 888999999999987654 6666633 4579999999999874
No 88
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.3e-19 Score=188.30 Aligned_cols=170 Identities=18% Similarity=0.229 Sum_probs=133.2
Q ss_pred EEEEEeEeecCC-----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------
Q 007511 281 LHFVSAVKNWGL-----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------- 338 (601)
Q Consensus 281 V~lvSa~kg~G~-----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------- 338 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDV-NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 445677777753 4599999 99999997665 999999999999999999999999541
Q ss_pred ccccceeEeeecC---C-CCCceeeeeeeccc---cc------hhhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc-
Q 007511 339 EEKNIVSHLTEAP---V-PGTTLGIVRVEGVL---PA------QAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 339 ~~~~~i~~v~qs~---~-pgtT~~~i~~~~~l---~~------~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
..++.++|++|.+ . +.+..+++.+.... .. ..++++.+||. . .++.+..||+||+||++||++|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 1235689999986 2 33337776543111 11 14678899996 4 6788999999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++....+.|.|++.++ .+||++++|++|++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~ 225 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 888999999999988765567777443 579999999999974
No 89
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.79 E-value=1.4e-19 Score=193.10 Aligned_cols=165 Identities=23% Similarity=0.261 Sum_probs=131.2
Q ss_pred EeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------ccccceeEe
Q 007511 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------------EEKNIVSHL 347 (601)
Q Consensus 285 Sa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------------~~~~~i~~v 347 (601)
++.+.|+...+ ++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++++
T Consensus 4 ~l~~~~~~~~~--~i-sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGDFSL--DA-DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECCEEE--EE-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 56677776554 67 88889887655 999999999999999999999998541 124568999
Q ss_pred eecCC--CCCc-eeeeeeecccc---c----hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLP---A----QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~---~----~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
+|.+. |++| .+++.+..... . ..++++.+||.. .++.+..|||||+||++||++| +|++++|
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts 160 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLA 160 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 99875 7777 77766532110 1 256788899976 7888999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..+++....+.+.+++.++ .+||++++|++|++..
T Consensus 161 ~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 212 (354)
T TIGR02142 161 ALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA 212 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 888999999999988765566776443 4789999999999853
No 90
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.6e-19 Score=188.56 Aligned_cols=169 Identities=18% Similarity=0.193 Sum_probs=131.6
Q ss_pred EEEEEeEeecCCc-----cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------
Q 007511 281 LHFVSAVKNWGLK-----SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------- 338 (601)
Q Consensus 281 V~lvSa~kg~G~~-----~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------- 338 (601)
+.+.++.+.|+.. .+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|+.|.+.
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~v-sl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNV-SVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEECCCCCccccceeee-EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 3456666777532 589999 99999997554 999999999999999999999999541
Q ss_pred --------------------ccccceeEeeecCC---CCCc-eeeeeeecc---cc------chhhhhccCCCc-C-cCC
Q 007511 339 --------------------EEKNIVSHLTEAPV---PGTT-LGIVRVEGV---LP------AQAKLFDTPGLL-H-PNQ 383 (601)
Q Consensus 339 --------------------~~~~~i~~v~qs~~---pgtT-~~~i~~~~~---l~------~~~~llDtpGL~-~-~~~ 383 (601)
..++.++|++|.+. ...| .+++.+... .. ...++++.+||. . .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 12456899999752 3334 676654321 11 125678899996 3 788
Q ss_pred ccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeec
Q 007511 384 ITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHM 447 (601)
Q Consensus 384 ~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~ 447 (601)
.+..|||||+||++||++| +|++++| |+..+..+..+++....+ |.|++.+ ..+||++++|++
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999 9999999 788899999999988754 6777633 358999999999
Q ss_pred ceec
Q 007511 448 GKTE 451 (601)
Q Consensus 448 Gki~ 451 (601)
|++.
T Consensus 241 G~i~ 244 (305)
T PRK13651 241 GKII 244 (305)
T ss_pred CEEE
Confidence 9974
No 91
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=4.2e-19 Score=178.42 Aligned_cols=170 Identities=21% Similarity=0.237 Sum_probs=130.7
Q ss_pred EEEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------c--------c
Q 007511 281 LHFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------E--------E 340 (601)
Q Consensus 281 V~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------~--------~ 340 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. . .
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNV-SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 456677777753 4689999 99999997655 999999999999999999999999541 0 1
Q ss_pred -ccceeEeeecCC--CCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 341 -KNIVSHLTEAPV--PGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 341 -~~~i~~v~qs~~--pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
++.++|++|.+. +.+| .+++.+... ... ..++++.+|+.. .++.+..|||||+||+++|+++ +|
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p 164 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNP 164 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 256899999865 6656 676654211 111 146788899976 6778899999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++++| |+.....+..+++....+.|.+++.++ ..++++++|++|++.
T Consensus 165 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~ 224 (233)
T PRK11629 165 RLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT 224 (233)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEE
Confidence 99999 888999999999987654466766333 234688899999874
No 92
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.79 E-value=5.7e-19 Score=166.69 Aligned_cols=151 Identities=28% Similarity=0.394 Sum_probs=110.0
Q ss_pred HhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHH
Q 007511 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (601)
Q Consensus 190 l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~ 269 (601)
+.++++++|+|++|+|++++.++.+..+.+++... +. + .|+++|+||+||+++ ..+..|+..+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~--------~~----~-~p~ilVlNKiDl~~~----~~~~~~~~~~ 64 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE--------KP----H-KHLIFVLNKCDLVPT----WVTARWVKIL 64 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhc--------cC----C-CCEEEEEEchhcCCH----HHHHHHHHHH
Confidence 34567789999999999999888888888887631 01 1 379999999999864 3467787765
Q ss_pred HHHcCCCccceEEEEEeEeecCCccccchhhhhcc----cCC-cEEEECCCCCchhHHHHHHhccccCCCCCccccccce
Q 007511 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG----KRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV 344 (601)
Q Consensus 270 ~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~----~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i 344 (601)
.+.. .+ .++.+|+.+++|...+++.+..+.. .++ .++++|.+|+|||||+|+|.|..
T Consensus 65 ~~~~---~~-~~~~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~-------------- 126 (157)
T cd01858 65 SKEY---PT-IAFHASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKK-------------- 126 (157)
T ss_pred hcCC---cE-EEEEeeccccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCC--------------
Confidence 4321 12 2677899999999988888855421 112 46689999999999999999753
Q ss_pred eEeeecCCCCCceeeeeeeccccchhhhhccCCC
Q 007511 345 SHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (601)
Q Consensus 345 ~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL 378 (601)
.+.+++.||+|.....+. +.....++||||+
T Consensus 127 -~~~~~~~~g~T~~~~~~~--~~~~~~liDtPGi 157 (157)
T cd01858 127 -VCKVAPIPGETKVWQYIT--LMKRIYLIDCPGV 157 (157)
T ss_pred -ceeeCCCCCeeEeEEEEE--cCCCEEEEECcCC
Confidence 234456688887665553 3344689999996
No 93
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.79 E-value=2e-19 Score=184.37 Aligned_cols=172 Identities=20% Similarity=0.235 Sum_probs=135.6
Q ss_pred ceEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------cccccee
Q 007511 279 TKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVS 345 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~ 345 (601)
..+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+++.|.+. ..++.++
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENL-TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEECCEEEeeec-ceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 346778888899877899999 99999997655 999999999999999999999999541 1234689
Q ss_pred EeeecCC--CCCc-eeeeeeec--c------ccc-----hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 346 HLTEAPV--PGTT-LGIVRVEG--V------LPA-----QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~--~------l~~-----~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
|++|.+. ++.| .+++.+.. . ... ..++++.+|+.. .++.+..||+||+||++||+++ +|++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 164 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI 164 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCE
Confidence 9999875 5555 56554310 0 001 146788889876 6788999999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
++| |+.....+..+++....+.+.+++.+ ..+||+++.|++|++.
T Consensus 165 lllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 223 (265)
T PRK10253 165 MLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223 (265)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999 88889999999988766446666633 3579999999999974
No 94
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.4e-19 Score=184.16 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=132.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------c-cccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------E-EKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~-~~~~i~~ 346 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. . .+..+++
T Consensus 6 l~~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 6 LSVSGLMMRFGGLLAVNNV-NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred EEEeeEEEEECCEEEEEee-eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 5567778888877899999 99999997665 999999999999999999999999541 0 1234788
Q ss_pred eeecCC--CCCc-eeeeeeecc----------------cc--------chhhhhccCCCcC-cCCccCCCCHHHHHHhcc
Q 007511 347 LTEAPV--PGTT-LGIVRVEGV----------------LP--------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNI 398 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~----------------l~--------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~i 398 (601)
++|.+. +++| .+++.+... .. ...++++.+|+.. .++.+..||+||+||++|
T Consensus 85 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 164 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEI 164 (255)
T ss_pred eccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHH
Confidence 888765 6656 665543100 00 1145678889866 678899999999999999
Q ss_pred cccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 399 NKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 399 araL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+++ +|++++| |+..+..+..++.....+.+.+++.+ ..+||+++++++|++.
T Consensus 165 a~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 233 (255)
T PRK11300 165 ARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 (255)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999 9999999 88899999999998766546676633 3579999999999974
No 95
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.78 E-value=1.4e-19 Score=191.07 Aligned_cols=159 Identities=19% Similarity=0.259 Sum_probs=127.1
Q ss_pred ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccccceeEeeecC----C
Q 007511 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEKNIVSHLTEAP----V 352 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~~~i~~v~qs~----~ 352 (601)
..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.++++|.+. ..++.++|++|++ .
T Consensus 34 ~~~l~~v-sl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGV-TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 4588999 99999998655 999999999999999999999999541 1245799999987 2
Q ss_pred CCCc-eeeeeeecc-----ccc------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 353 PGTT-LGIVRVEGV-----LPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 353 pgtT-~~~i~~~~~-----l~~------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
|.+| .+++.+... +.. ..++++.+|+.. .++++++|||||+|||+||++| +|+++++
T Consensus 113 p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 6666 666543211 111 146788999953 6889999999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
|...+..+..+++.+..+.+.++++++ .+||++++|+.|++..
T Consensus 193 D~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 193 DVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 888899999999988765577777544 5799999999999843
No 96
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2e-19 Score=191.69 Aligned_cols=166 Identities=20% Similarity=0.230 Sum_probs=131.7
Q ss_pred EeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------ccccceeEe
Q 007511 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------------EEKNIVSHL 347 (601)
Q Consensus 285 Sa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------------~~~~~i~~v 347 (601)
+..+.|+...+ ++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++|+
T Consensus 5 ~l~k~~~~~~~--~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v 81 (352)
T PRK11144 5 NFKQQLGDLCL--TV-NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV 81 (352)
T ss_pred EEEEEeCCEEE--EE-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEE
Confidence 66777876433 67 88888887655 999999999999999999999998541 124679999
Q ss_pred eecCC--CCCc-eeeeeeecccc---chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------cc
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLP---AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KA 411 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~---~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~ 411 (601)
+|.+. |.+| .+++.+..... ...++++.+|+.. .++.+..|||||+||++||++| +|++++| |+
T Consensus 82 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~ 161 (352)
T PRK11144 82 FQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred cCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence 99875 7777 77776532111 1256889999976 7888999999999999999999 9999999 88
Q ss_pred chHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecch
Q 007511 412 GHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTENA 453 (601)
Q Consensus 412 ~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~a 453 (601)
..+..+..+++....+.+.+++.++ .+||++++|++|++...
T Consensus 162 ~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 162 PRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe
Confidence 8899999999988766566776443 57999999999998543
No 97
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=8.5e-20 Score=187.54 Aligned_cols=167 Identities=19% Similarity=0.238 Sum_probs=131.8
Q ss_pred EEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------c---------cccceeE
Q 007511 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------E---------EKNIVSH 346 (601)
Q Consensus 284 vSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------~---------~~~~i~~ 346 (601)
.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. . .++.+++
T Consensus 28 ~~~~~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 28 EEILKKTGQTVGVNDV-SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhhcCCceEeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 3566777778889999 99999998665 999999999999999999999998541 0 1246899
Q ss_pred eeecCC--CCCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe--
Q 007511 347 LTEAPV--PGTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-- 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-- 409 (601)
++|.+. +..| .+++.+.... .. ..++++.+|+.. .++.+..||+||+||++||++| +|++++|
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999865 5556 6666542111 11 146788899976 6888999999999999999999 9999999
Q ss_pred -----ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 -----KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -----D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++....+.|.+++.+ ..+||++++|++|++.
T Consensus 187 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 240 (269)
T cd03294 187 AFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 78889999999998765546676633 3578999999999974
No 98
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.8e-19 Score=184.61 Aligned_cols=170 Identities=18% Similarity=0.212 Sum_probs=133.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEe
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v 347 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+. ..++.++++
T Consensus 12 l~i~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 90 (265)
T PRK10575 12 FALRNVSFRVPGRTLLHPL-SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL 90 (265)
T ss_pred EEEeeEEEEECCEEEEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEe
Confidence 5677788888777899999 99999997655 999999999999999999999999541 123468999
Q ss_pred eecCC--CCCc-eeeeeeecc--------cc-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 348 TEAPV--PGTT-LGIVRVEGV--------LP-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~--------l~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
+|.+. +++| .+++.+... .. ....+++.+|+.. .++.+..|||||+||+++|++| +|++++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 170 (265)
T PRK10575 91 PQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLL 170 (265)
T ss_pred ccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 98753 6656 566543210 00 1145778888866 6788999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
| |+.....+..+++....+.+.+++.+ ..+||++++|++|++.
T Consensus 171 LDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~ 227 (265)
T PRK10575 171 LDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 (265)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9 88889999999998765545666633 3578999999999974
No 99
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=4.2e-20 Score=175.21 Aligned_cols=170 Identities=21% Similarity=0.296 Sum_probs=135.4
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEe
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v 347 (601)
|.+.++.+.||.+.+++++ ++.+++|.+. ++|||||||||||.+++.+.+.++|.+ .+..++++.+
T Consensus 2 I~i~nv~K~y~~~~vl~~i-sl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDV-SLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhCCEEeeccc-eeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 3456778999999999999 9999888765 499999999999999999999999965 2344555666
Q ss_pred eecCC--CCCc-eeeeeeeccccc------------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLPA------------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~~------------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
.|... -..| ++.+.|. +++. ..+.++.++|.+ .+++..+|||||+||+.+|..+ +.+.++|
T Consensus 81 kQ~N~i~~rlTV~dLv~FG-RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 81 KQENHINSRLTVRDLVGFG-RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred HhhchhhheeEHHHHhhcC-CCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 66554 3344 4444432 2211 145677888887 7899999999999999999999 7777777
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeecceecc
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki~~ 452 (601)
|-.++..++.++|..+.+.+.|++ ++.+|+|.++.+++|++..
T Consensus 160 DEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~ 216 (252)
T COG4604 160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK 216 (252)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe
Confidence 788899999999999999888877 5678999999999999854
No 100
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.78 E-value=2.3e-19 Score=179.37 Aligned_cols=169 Identities=20% Similarity=0.241 Sum_probs=129.5
Q ss_pred EEEEeEeecCCc----cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccc
Q 007511 282 HFVSAVKNWGLK----SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEK 341 (601)
Q Consensus 282 ~lvSa~kg~G~~----~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~ 341 (601)
.+.++.+.|+.. .+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..+
T Consensus 3 ~~~~v~~~~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 3 EVKNLSVSFPTGGGSVKALDDV-SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred EEEeeeEeccCCCcceeeecCc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 455666777654 689999 99999997655 999999999999999999999999541 123
Q ss_pred cceeEeeecC---C-CCCc-eeeeeeeccc-----cc---h---hhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc-
Q 007511 342 NIVSHLTEAP---V-PGTT-LGIVRVEGVL-----PA---Q---AKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 342 ~~i~~v~qs~---~-pgtT-~~~i~~~~~l-----~~---~---~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
+.++|++|.+ . +.+| .+++.+.... .. . .++++.+|+. . .++.+..||+||+||+++|++|
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~ 161 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALA 161 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHh
Confidence 5689999987 2 4455 6665432110 00 1 2577888985 3 6778899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++....+.+.+++.+ ..+||++++|++|++.
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 162 LNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEE
Confidence 9999999 78889999999998876535666633 3478999999999874
No 101
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.78 E-value=1.1e-19 Score=180.91 Aligned_cols=166 Identities=17% Similarity=0.219 Sum_probs=128.9
Q ss_pred EEEeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEee
Q 007511 283 FVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLT 348 (601)
Q Consensus 283 lvSa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~ 348 (601)
+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.+++++
T Consensus 3 ~~~l~~~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~ 81 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDL-SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCP 81 (220)
T ss_pred EEeeEEEeCCCCceeecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEec
Confidence 4456667765 6799999 99999997655 999999999999999999999999541 1245689999
Q ss_pred ecCC--CCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 349 EAPV--PGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
|.+. +..| .+++.+... ... ..++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 161 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 9865 4555 666544211 111 146788889865 6778899999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++.... +.+++. +..+||+++.+++|++.
T Consensus 162 ~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 211 (220)
T cd03263 162 SGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLR 211 (220)
T ss_pred CCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEE
Confidence 88889999999988754 356653 33578999999999874
No 102
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5.5e-19 Score=182.48 Aligned_cols=170 Identities=18% Similarity=0.183 Sum_probs=134.8
Q ss_pred EEEEEeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------ccccccee
Q 007511 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~ 345 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+ ...++.++
T Consensus 6 l~~~~l~~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 6 IRVEHISFRYPDAATYALKDV-SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEEEeCCCCccceeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 556777788864 4599999 99999998765 99999999999999999999999954 12345689
Q ss_pred EeeecC---CCCCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 346 HLTEAP---VPGTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 346 ~v~qs~---~pgtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
|++|.+ .+..| .+++.+.... .. ..++++.+||.. .++.+..||+||+||+++|++| +|++++|
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 164 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIIL 164 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999986 25555 7776543211 11 256788889976 7788999999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+.+.|++.++ ..||+++++++|++.
T Consensus 165 DEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~ 219 (279)
T PRK13635 165 DEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEIL 219 (279)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 889999999999988765466766322 358999999999874
No 103
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.8e-19 Score=194.01 Aligned_cols=165 Identities=15% Similarity=0.217 Sum_probs=131.0
Q ss_pred eEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc----------------cccceeEee
Q 007511 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE----------------EKNIVSHLT 348 (601)
Q Consensus 286 a~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~----------------~~~~i~~v~ 348 (601)
..+.||....++++ ++.+.+|++++ +|+||||||||+++|+|+++|++|.+.. .++.++|++
T Consensus 34 ~~~~~~~~~~L~~i-sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~ 112 (400)
T PRK10070 34 ILEKTGLSLGVKDA-SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVF 112 (400)
T ss_pred HHhhcCCeEEEEeE-EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEE
Confidence 34455555578888 89999997665 9999999999999999999999995410 124699999
Q ss_pred ecCC--CCCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 349 EAPV--PGTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
|.+. |+.| .+++.+.... .. ..++++.+||.. .++.+.+|||||+||++||++| +|++++|
T Consensus 113 Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 113 QSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 9875 6666 7777653211 11 146789999976 7888999999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+.+.|++.++ .+||++++|++|++.
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~ 244 (400)
T PRK10070 193 SALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 889999999999987665567776443 579999999999984
No 104
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.78 E-value=1.2e-19 Score=179.63 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=126.3
Q ss_pred EeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------ccccceeEeeecCC----
Q 007511 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------EEKNIVSHLTEAPV---- 352 (601)
Q Consensus 285 Sa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------~~~~~i~~v~qs~~---- 352 (601)
++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|++|.+. ..++.++|++|.+.
T Consensus 4 ~l~~~~~~~~~l~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~ 82 (213)
T cd03235 4 DLTVSYGGHPVLEDV-SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRD 82 (213)
T ss_pred cceeEECCEEeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccC
Confidence 344556656789999 99999997655 999999999999999999999999652 22457899999764
Q ss_pred CCCc-eeeeeeeccc--------c-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe------
Q 007511 353 PGTT-LGIVRVEGVL--------P-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------ 409 (601)
Q Consensus 353 pgtT-~~~i~~~~~l--------~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------ 409 (601)
+..| .+++.+.... . ....+++.+|+.. .++.+..|||||+||+++|++| +|++++|
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 83 FPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred CCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 2244 6665432110 0 1146788889876 6778999999999999999999 9999999
Q ss_pred -ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeeccee
Q 007511 410 -KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKT 450 (601)
Q Consensus 410 -D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki 450 (601)
|+.....+.++++....+ +.+++.+ ..+||++++|++|.+
T Consensus 163 LD~~~~~~l~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 163 VDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 888999999999987654 6666633 357899999987644
No 105
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.1e-19 Score=181.53 Aligned_cols=169 Identities=15% Similarity=0.192 Sum_probs=132.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------c-cccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------E-EKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~-~~~~i~~ 346 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. . .++.+++
T Consensus 4 l~~~~l~~~~~~~~~l~~~-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 4 LTAKNLAKAYKGRRVVEDV-SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EEEeCcEEEeCCEEEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 4456677778777899999 89999997655 999999999999999999999999541 1 2356899
Q ss_pred eeecCC--CCCc-eeeeeeecccc----------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 347 LTEAPV--PGTT-LGIVRVEGVLP----------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~l~----------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
++|.+. +++| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999875 5556 66665421111 1245788888876 6778899999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ +.+++.+ ..+||+++.|++|++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~d~v~~l~~G~i~ 216 (241)
T PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDS-GLGVLITDHNVRETLAVCERAYIVSQGHLI 216 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEeCCeEE
Confidence 788888999999877654 6666633 3578999999999974
No 106
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=5.2e-19 Score=182.21 Aligned_cols=168 Identities=17% Similarity=0.220 Sum_probs=131.6
Q ss_pred EEEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------------cccccceeE
Q 007511 282 HFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-------------GEEKNIVSH 346 (601)
Q Consensus 282 ~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-------------~~~~~~i~~ 346 (601)
.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+ ...++.+++
T Consensus 3 ~~~~l~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 3 RLENVSYSYPDGTPALENI-NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEcCCCCceeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 3556777774 45699999 99999997665 99999999999999999999999954 112356899
Q ss_pred eeecCC---CCCc-eeeeeeeccc---c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 347 LTEAPV---PGTT-LGIVRVEGVL---P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 347 v~qs~~---pgtT-~~~i~~~~~l---~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
++|.+. ++.| .+++.+.... . ...++++.+|+.. .++.+..||+||+||++||++| +|++++|
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 161 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD 161 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999863 4455 6766543211 1 1145788889976 6788999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ |.+++.++ ..||+++++++|++.
T Consensus 162 EPt~gLD~~~~~~l~~~l~~l~~~-g~til~~tH~~~~~~~~d~v~~l~~G~i~ 214 (274)
T PRK13644 162 EVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELHDADRIIVMDRGKIV 214 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEEEEEECCEEE
Confidence 888899999999987655 67777333 469999999999974
No 107
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.1e-19 Score=185.35 Aligned_cols=170 Identities=17% Similarity=0.223 Sum_probs=133.0
Q ss_pred EEEEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeE
Q 007511 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~ 346 (601)
+.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.+++
T Consensus 4 l~~~~l~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNI-NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCCCceeeEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 44567777884 45689999 99999997655 999999999999999999999999541 12346899
Q ss_pred eeecCC---CCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 347 LTEAPV---PGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 347 v~qs~~---pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
++|.+. ...| .+++.+... ... ..++++.+|+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilD 162 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLD 162 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999862 3345 666643211 111 246788889976 6888999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++....+.+.|++.+ ..+||++++|++|++.
T Consensus 163 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~ 217 (277)
T PRK13652 163 EPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217 (277)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE
Confidence 88889999999998876546677643 3579999999999974
No 108
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.78 E-value=1.9e-19 Score=181.75 Aligned_cols=168 Identities=23% Similarity=0.297 Sum_probs=132.1
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------ccccceeE
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIVSH 346 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i~~ 346 (601)
.+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|++|.+. ..++.++|
T Consensus 3 ~~~~l~~~~~~~~il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 3 EFKNVSKHFGPTQVLHNI-DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEEeEEEEECCeEEeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 455667777767799999 99999997665 999999999999999999999999541 12346899
Q ss_pred eeecCC--CCCc-eeeeeeecc----ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 347 LTEAPV--PGTT-LGIVRVEGV----LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~----l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
++|.+. +..| .+++.+... ... ..++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 161 (240)
T PRK09493 82 VFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD 161 (240)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999865 5555 666654210 111 146788889975 6778899999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++....+ +.+++.+ ..+||+++.|++|++.
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 215 (240)
T PRK09493 162 EPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIA 215 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 788899999999987655 6666633 3578999999999985
No 109
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.78 E-value=1.4e-19 Score=181.31 Aligned_cols=168 Identities=16% Similarity=0.220 Sum_probs=129.9
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------ccccceeEee
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EEKNIVSHLT 348 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~~~~i~~v~ 348 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|.+|.+. ..++.+++++
T Consensus 3 ~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGV-SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVP 81 (230)
T ss_pred EEeEEEEeCCeEEecce-eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEec
Confidence 45666777777899999 99999997665 999999999999999999999999541 1134689999
Q ss_pred ecCC--CCCc-eeeeeeecccc--c----hhhhhccCC-CcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe------
Q 007511 349 EAPV--PGTT-LGIVRVEGVLP--A----QAKLFDTPG-LLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------ 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l~--~----~~~llDtpG-L~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------ 409 (601)
|.+. ++.| .+++.+..... . ..++++.++ +.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~ 161 (230)
T TIGR03410 82 QGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161 (230)
T ss_pred cCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 9875 6656 66664321111 0 145666666 333 6778999999999999999999 9999999
Q ss_pred -ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 -KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+.+.+++.+ ..+||+++++++|++.
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~ 211 (230)
T TIGR03410 162 IQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVV 211 (230)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 88899999999998766445676643 3478999999999874
No 110
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.78 E-value=7.2e-19 Score=176.02 Aligned_cols=170 Identities=25% Similarity=0.307 Sum_probs=130.6
Q ss_pred EEEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------c--------c
Q 007511 281 LHFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------E--------E 340 (601)
Q Consensus 281 V~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------~--------~ 340 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+. . .
T Consensus 7 l~~~~l~~~~~~~~~~~~~l~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 7 VEVHHLKKSVGQGEHELSILTGV-ELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred EEEeeeEEEccCCCcceEEEecc-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 455667777764 2489999 89999998666 999999999999999999999999541 0 1
Q ss_pred -ccceeEeeecCC--CCCc-eeeeeeeccc---c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 341 -KNIVSHLTEAPV--PGTT-LGIVRVEGVL---P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 341 -~~~i~~v~qs~~--pgtT-~~~i~~~~~l---~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
++.+++++|.+. ++.| .+++.+.... . ...++++.+|+.. .++.+..||+||+||++||++| +|
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p 165 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRP 165 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 246899999865 5555 6665432111 1 1146788889876 6778999999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++++| |+.....+..+++....+.+.+++.++ ..||+++++++|++.
T Consensus 166 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 166 DVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQ 225 (228)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999 788899999999987665456666332 358999999999873
No 111
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.78 E-value=1.3e-19 Score=193.83 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=132.5
Q ss_pred EeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc--------------------ccccee
Q 007511 287 VKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE--------------------EKNIVS 345 (601)
Q Consensus 287 ~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~--------------------~~~~i~ 345 (601)
.+.||...+++++ ++.+.+|++++ +|+||||||||+++|+|+++|++|.+.. .++.++
T Consensus 31 ~~~~g~~~~l~~v-sf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 31 LDETGLVVGVANA-SLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred HHhhCCEEEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 3556667778888 89999998765 9999999999999999999999984410 124699
Q ss_pred EeeecCC--CCCc-eeeeeeecccc---c------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVLP---A------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l~---~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
|++|.+. |..| .+++.+..... . ..++++.+||.. .++.+.+|||||+||++|||+| +|++++|
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999886 7666 88876542111 1 156899999976 7888999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..++..+..+.+.|++++ ..+||++++|++|++.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv 244 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRII 244 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 89999999999998876556777744 3579999999999874
No 112
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.2e-19 Score=184.62 Aligned_cols=168 Identities=16% Similarity=0.148 Sum_probs=130.1
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------ccccceeE
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIVSH 346 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i~~ 346 (601)
.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.+++
T Consensus 3 ~~~~l~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~ 81 (271)
T PRK13638 3 ATSDLWFRYQDEPVLKGL-NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVAT 81 (271)
T ss_pred EEEEEEEEcCCcccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEE
Confidence 456777788777899999 99999997654 999999999999999999999999541 12346899
Q ss_pred eeecCC---CCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 347 LTEAPV---PGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 347 v~qs~~---pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
++|.+. ..+| .+++.+... ... ..++++.+|+.. .++.+..|||||+||+++|++| +|++++|
T Consensus 82 v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLD 161 (271)
T PRK13638 82 VFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD 161 (271)
T ss_pred EeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999863 3334 444433211 111 135788888876 6778999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ +.+++.++ .+||++++|++|++.
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~~G~i~ 215 (271)
T PRK13638 162 EPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQIL 215 (271)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 888899999999987655 66766433 579999999999974
No 113
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.3e-19 Score=186.02 Aligned_cols=169 Identities=20% Similarity=0.227 Sum_probs=132.2
Q ss_pred EEEEEeEeecCC-----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------
Q 007511 281 LHFVSAVKNWGL-----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------- 338 (601)
Q Consensus 281 V~lvSa~kg~G~-----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------- 338 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+.
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~v-sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNI-SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 456677788863 3589999 99999997665 999999999999999999999999541
Q ss_pred ccccceeEeeecC---CCCCc-eeeeeeecc---cc------chhhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc-
Q 007511 339 EEKNIVSHLTEAP---VPGTT-LGIVRVEGV---LP------AQAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 339 ~~~~~i~~v~qs~---~pgtT-~~~i~~~~~---l~------~~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
..++.+++++|.+ ...+| .+++.+... .. ...++++.+||. . .++.+..||+||+||++||++|
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 1234689999985 23345 676654211 11 115678889996 3 6888999999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++....+ |.+++.+ ..+||++++|++|++.
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~~~d~v~~l~~G~i~ 224 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLI 224 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 888899999999987654 6777643 3589999999999873
No 114
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=4e-19 Score=182.71 Aligned_cols=170 Identities=16% Similarity=0.193 Sum_probs=133.2
Q ss_pred EEEEEeEeecC--CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------cccccee
Q 007511 281 LHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G--~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~ 345 (601)
+.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++
T Consensus 8 l~~~nl~~~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 8 IKVENVSFSYPNSENNALKNV-SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEeEEEEcCCCCccceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 55677778884 45799999 99999997665 999999999999999999999999541 2345689
Q ss_pred EeeecC---CCCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 346 HLTEAP---VPGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 346 ~v~qs~---~pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
|++|.+ +++.| .+++.+... ... ..++++.+|+.. .++.+..||+||+||++||++| +|++++|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 166 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIF 166 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999986 35656 777654211 111 145788889976 6888999999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+++.+++.++ .+||++++|++|++.
T Consensus 167 DEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~ 221 (271)
T PRK13632 167 DESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLI 221 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEE
Confidence 888899999999987765446666221 378999999999974
No 115
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.6e-19 Score=185.61 Aligned_cols=170 Identities=16% Similarity=0.221 Sum_probs=132.8
Q ss_pred EEEEEeEeecCC-----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------
Q 007511 281 LHFVSAVKNWGL-----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------- 338 (601)
Q Consensus 281 V~lvSa~kg~G~-----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------- 338 (601)
+.+.+..+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|+.|.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDV-NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEECCCCccccCceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 445566667753 3599999 99999997655 999999999999999999999999541
Q ss_pred ccccceeEeeecCC----CCCceeeeeeecc---ccc------hhhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc-
Q 007511 339 EEKNIVSHLTEAPV----PGTTLGIVRVEGV---LPA------QAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 339 ~~~~~i~~v~qs~~----pgtT~~~i~~~~~---l~~------~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
..++.+++++|.+. +.+..+++.+... ... ..++++.+||. . .++.+..||+||+||++||++|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 13457899999862 3333777654311 111 14678889996 4 6778999999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++.+..+.|.|++.+ ..+||++++|++|++.
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~ 225 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 89999999999998876556777743 3578999999999974
No 116
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.78 E-value=3.1e-19 Score=176.92 Aligned_cols=166 Identities=20% Similarity=0.176 Sum_probs=127.6
Q ss_pred EEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeecCC
Q 007511 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEAPV 352 (601)
Q Consensus 284 vSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs~~ 352 (601)
.++.++|+. .+.++ ++.+.+|+++. +|+||+|||||+++|+|+.+|++|.+. ..++.+++++|.+.
T Consensus 4 ~~l~~~~~~--~~~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (213)
T TIGR01277 4 DKVRYEYEH--LPMEF-DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80 (213)
T ss_pred EeeeEEeCC--cceee-EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence 344555542 45677 88889997666 999999999999999999999999541 23456899999875
Q ss_pred --CCCc-eeeeeeecc--c--c-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------c
Q 007511 353 --PGTT-LGIVRVEGV--L--P-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------K 410 (601)
Q Consensus 353 --pgtT-~~~i~~~~~--l--~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D 410 (601)
++.| .+++.+... . . ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++| |
T Consensus 81 ~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 160 (213)
T TIGR01277 81 LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160 (213)
T ss_pred cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 5555 677654211 1 0 1245788889976 6788999999999999999999 9999999 8
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 411 AGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+.....+.++++....+.+.+++.+ ..+||+++.|++|++..
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 161 PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 8889999999998776546666633 35799999999998753
No 117
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.5e-19 Score=182.57 Aligned_cols=169 Identities=20% Similarity=0.260 Sum_probs=132.4
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEe
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v 347 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|++|.+. ..++.++++
T Consensus 3 l~~~~l~~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDL-SLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECCEEEEeee-eeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 4456777788877899999 99999998655 999999999999999999999999541 123468999
Q ss_pred eecCC--CCCc-eeeeeeecc-----c---cc-----hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 348 TEAPV--PGTT-LGIVRVEGV-----L---PA-----QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~-----l---~~-----~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
+|.+. ++.| .+++.+... + .. ..++++.+|+.. .++.+..||+||+||+++|+++ +|++++
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 161 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99865 5555 565543210 0 01 146788889875 6788999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
| |+..+..+..+++....+ +.+++.+ ..+||+++++++|++.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 162 LDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVM 217 (255)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEECCeEE
Confidence 9 888899999999887655 6666643 3579999999999974
No 118
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.78 E-value=2.8e-19 Score=180.59 Aligned_cols=168 Identities=17% Similarity=0.228 Sum_probs=131.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------ccccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~~~~i~~ 346 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.+++
T Consensus 3 i~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 3 LYLEGLSVSFDGFKALNDL-SLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEEEeeEEEcCCeEEeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 3456777778777799999 99999998765 999999999999999999999999541 11345899
Q ss_pred eeecCC--CCCc-eeeeeeecc--------c---c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--C
Q 007511 347 LTEAPV--PGTT-LGIVRVEGV--------L---P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--K 403 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~--------l---~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~ 403 (601)
++|.+. +++| .+++.+... + . ...++++.+|+.. .++.+..||+||+||+++|+++ +
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~ 161 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD 161 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999875 6666 666543211 0 0 1256788889976 6788999999999999999999 9
Q ss_pred CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 404 PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 404 P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|++++| |+..+..+..+++.... +.+++.+ ..+||+++++++|++.
T Consensus 162 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 162 PKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVL 221 (242)
T ss_pred CCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 999999 88889999999998754 4566633 3579999999999974
No 119
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.78 E-value=4.6e-19 Score=181.04 Aligned_cols=170 Identities=26% Similarity=0.302 Sum_probs=132.6
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEe
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v 347 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.++++
T Consensus 3 l~~~~l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDV-SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEEEeEEEEeCCeeeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4556777888877899999 99999997655 999999999999999999999999541 123468999
Q ss_pred eecCC--CCCc-eeeeeeecccc---------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--------CCCE
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLP---------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--------KPRT 406 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~---------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--------~P~l 406 (601)
+|.+. +..| .+++.+..... ...++++.+|+.. .++.+..||+||+||++||++| +|++
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 99864 5555 66665421110 1246788889976 6788999999999999999998 3789
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
++| |+..+..+..+++....+.+.+++.+ ..+||++++|++|++.
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 220 (258)
T PRK13548 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV 220 (258)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE
Confidence 998 88999999999998763336666633 3489999999999874
No 120
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3.2e-19 Score=184.60 Aligned_cols=170 Identities=20% Similarity=0.256 Sum_probs=134.2
Q ss_pred EEEEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------ccccce
Q 007511 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIV 344 (601)
Q Consensus 281 V~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i 344 (601)
+.+.++.+.|+ ...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|.+|.+. ..++.+
T Consensus 6 l~~~~l~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 6 LKVEELNYNYSDGTHALKGI-NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred EEEEeEEEEeCCCCeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 55677778885 46799999 99999997655 999999999999999999999999541 123568
Q ss_pred eEeeecCC---CCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 345 SHLTEAPV---PGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 345 ~~v~qs~~---pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
+|++|.+. ...| .+++.+... ... ...+++.+|+.. .++.+..||+||+||++||++| +|++++
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLi 164 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV 164 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999862 3334 777654211 111 246688899976 7888999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
| |+..+..+..+++....+.|.+++.+ ..+||++++|++|++.
T Consensus 165 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~ 221 (283)
T PRK13636 165 LDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221 (283)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9 89999999999998876546677643 3589999999999973
No 121
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.4e-19 Score=169.78 Aligned_cols=157 Identities=21% Similarity=0.241 Sum_probs=124.3
Q ss_pred ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcccccc-------ceeEeeecCC--CCCc-eeeee
Q 007511 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-------IVSHLTEAPV--PGTT-LGIVR 361 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~-------~i~~v~qs~~--pgtT-~~~i~ 361 (601)
..+++++ ++.+.+|+.++ +|++|||||||+|+++|+..|..|.+....+ .-|.|||++. |.+| .+|+.
T Consensus 18 ~~~le~v-sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNva 96 (259)
T COG4525 18 RSALEDV-SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVA 96 (259)
T ss_pred hhhhhcc-ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHH
Confidence 4589999 99999997555 9999999999999999999999997633222 3478999887 8888 89988
Q ss_pred eeccccch---------hhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHH
Q 007511 362 VEGVLPAQ---------AKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMR 422 (601)
Q Consensus 362 ~~~~l~~~---------~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir 422 (601)
+...+.+. .+++...|+.. .++++-+|||||+||+.||||| +|+.++| |...+..+..++-
T Consensus 97 fgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLl 176 (259)
T COG4525 97 FGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176 (259)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHH
Confidence 86655442 46788899987 7888999999999999999999 9999999 5666777777766
Q ss_pred HHHHhcCceEEE-------EEEeecCEEEeec--cee
Q 007511 423 MDVEESSVESIY-------VTVWASPYLPLHM--GKT 450 (601)
Q Consensus 423 ~~~~~~g~tii~-------~~~~ad~vl~l~~--Gki 450 (601)
..-.+.|..++. +..+|++.++|.- |++
T Consensus 177 dlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRv 213 (259)
T COG4525 177 DLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213 (259)
T ss_pred HHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCcee
Confidence 655555655553 3457889888864 454
No 122
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.77 E-value=2.7e-19 Score=178.59 Aligned_cols=168 Identities=18% Similarity=0.239 Sum_probs=131.4
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc--------cccceeEeeecCC-
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE--------EKNIVSHLTEAPV- 352 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~--------~~~~i~~v~qs~~- 352 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+.. ..+.+++++|.+.
T Consensus 3 l~~v~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~ 81 (223)
T TIGR03740 3 TKNLSKRFGKQTAVNNI-SLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPL 81 (223)
T ss_pred EEeEEEEECCEEEEeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCc
Confidence 45666677767799999 89999997665 9999999999999999999999996521 1246889988764
Q ss_pred -CCCc-eeeeeeeccc---c--chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHH
Q 007511 353 -PGTT-LGIVRVEGVL---P--AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSI 415 (601)
Q Consensus 353 -pgtT-~~~i~~~~~l---~--~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~ 415 (601)
+..| .+++.+.... . ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++| |+..+.
T Consensus 82 ~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~ 161 (223)
T TIGR03740 82 YENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQ 161 (223)
T ss_pred cccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHH
Confidence 5555 6665432111 1 1256788899976 6778899999999999999999 9999999 888999
Q ss_pred HHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 416 HIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 416 ~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
.+..+++....+ +.+++.+ ..+||+++.+++|++..
T Consensus 162 ~l~~~L~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 162 ELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISEGVLGY 204 (223)
T ss_pred HHHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence 999999987654 5666633 35899999999999754
No 123
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3.3e-19 Score=188.01 Aligned_cols=170 Identities=16% Similarity=0.137 Sum_probs=129.0
Q ss_pred EEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC----CCCCcc------------c-
Q 007511 282 HFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA----GRGGDG------------E- 339 (601)
Q Consensus 282 ~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~----~~G~i~------------~- 339 (601)
.+.++.+.|+. ..+++++ ++.+.+|+++. ||+||||||||+++|+|++++ ++|.+. .
T Consensus 5 ~v~~l~~~~~~~~~~~~~l~~v-sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 5 NVDKLSVHFGDESAPFRAVDRI-SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEeCeEEEECCCCccEEEEeee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 34555566654 3689999 99999998665 999999999999999999874 566330 0
Q ss_pred ---cccceeEeeecCC----CCCc-eeeeeeecc----ccc------hhhhhccCCCcC----cCCccCCCCHHHHHHhc
Q 007511 340 ---EKNIVSHLTEAPV----PGTT-LGIVRVEGV----LPA------QAKLFDTPGLLH----PNQITTRLTREEQKLVN 397 (601)
Q Consensus 340 ---~~~~i~~v~qs~~----pgtT-~~~i~~~~~----l~~------~~~llDtpGL~~----~~~~~~~LSgGe~qrv~ 397 (601)
.++.+++++|++. |.+| .+.+..... ... ..++++.+||.. .++++++|||||+|||+
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~ 163 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM 163 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence 1236999999873 6666 333221110 111 146789999964 57889999999999999
Q ss_pred ccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 398 INKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 398 iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
||++| +|+++++ |+..+..+..+++.+..+.|.++++++ .+||++++|+.|++..
T Consensus 164 iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 164 IAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999 9999999 888999999999988776577777443 5899999999999844
No 124
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.77 E-value=6.2e-19 Score=196.95 Aligned_cols=169 Identities=18% Similarity=0.223 Sum_probs=136.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-------------cccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------------EKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------------~~~~i~~ 346 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+.. .+..+++
T Consensus 12 l~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 90 (510)
T PRK15439 12 LCARSISKQYSGVEVLKGI-DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90 (510)
T ss_pred EEEEeEEEEeCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 5567888888877899999 99999997654 9999999999999999999999996521 1235899
Q ss_pred eeecCC--CCCc-eeeeeeecccc-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe------
Q 007511 347 LTEAPV--PGTT-LGIVRVEGVLP-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------ 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~l~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------ 409 (601)
++|.+. ++.| .+++.+..... ...++++.+|+.. .++.+..|||||+|||+||++| +|++++|
T Consensus 91 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~ 170 (510)
T PRK15439 91 VPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTAS 170 (510)
T ss_pred EeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 999865 6666 67665532111 1246788999976 6888999999999999999999 9999999
Q ss_pred -ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 -KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ |.+++.+ ..+||++++|++|++.
T Consensus 171 LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 219 (510)
T PRK15439 171 LTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIA 219 (510)
T ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999988665 6677633 3579999999999873
No 125
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=8.1e-19 Score=177.31 Aligned_cols=169 Identities=20% Similarity=0.232 Sum_probs=132.5
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------------ccc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------------EEK 341 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------------~~~ 341 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..+
T Consensus 3 l~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDI-TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEeeEEEECCeeeEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 4456777788777899999 99999997655 999999999999999999999999541 113
Q ss_pred cceeEeeecCC--CCCc-eeeeeee-cc---cc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 342 NIVSHLTEAPV--PGTT-LGIVRVE-GV---LP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT-~~~i~~~-~~---l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
+.+++++|.+. +++| .+++.+. .. .. ...++++.+|+.. .++.+..||+||+||+++|+++ +|+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 46899999875 6666 6665421 00 11 1245788889976 6788999999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
+++| |+.....+..+++....+ +.+++.++ .+||+++.|.+|++.
T Consensus 162 llilDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~i~ 220 (242)
T PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELAET-GITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999 788899999999887654 66776443 478999999999874
No 126
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.77 E-value=6.1e-19 Score=196.64 Aligned_cols=168 Identities=17% Similarity=0.179 Sum_probs=134.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-------------cccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------------EKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------------~~~~i~~ 346 (601)
+.+.++.+.|+...+++++ ++.+..|++++ +|+||||||||+++|+|+.+|++|.+.. .++.+++
T Consensus 5 i~~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 5 LQLKGIDKAFPGVKALSGA-ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred EEEeeeEEEeCCeEEeeee-eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 4566777888877899999 99999997655 9999999999999999999999996511 1346899
Q ss_pred eeecCC--CCCc-eeeeeeecc-------ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEE
Q 007511 347 LTEAPV--PGTT-LGIVRVEGV-------LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~-------l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ll 407 (601)
++|.+. +.+| .+++.+... ... ..++++.+|+.. .++.+.+|||||+||++||++| +|+++
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 163 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVI 163 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999864 6666 676654211 111 146788999976 6888999999999999999999 99999
Q ss_pred Ee-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 408 RI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 408 lL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
+| |+..+..+..+++....+ +.+++. +..+||++++|++|++
T Consensus 164 lLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~~G~i 219 (501)
T PRK10762 164 IMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRDGQF 219 (501)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99 899999999999988655 666663 3458999999999987
No 127
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=7.9e-19 Score=185.51 Aligned_cols=170 Identities=19% Similarity=0.247 Sum_probs=129.4
Q ss_pred EEEEeEeec----CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc----CCCCCcc------------c-
Q 007511 282 HFVSAVKNW----GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD----AGRGGDG------------E- 339 (601)
Q Consensus 282 ~lvSa~kg~----G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~----~~~G~i~------------~- 339 (601)
.+.++.+.| +...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+ +++|.+. .
T Consensus 5 ~v~~l~~~y~~~~~~~~~l~~v-sl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 5 DIRNLTIEFKTSDGWVKAVDRV-SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEeeeEEEEeCCCCCEEEEeee-EEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 344555666 345689999 99999998665 99999999999999999986 4667431 0
Q ss_pred ---cccceeEeeecCC----CCCc-eeeeeee-------ccc--c------chhhhhccCCCcC----cCCccCCCCHHH
Q 007511 340 ---EKNIVSHLTEAPV----PGTT-LGIVRVE-------GVL--P------AQAKLFDTPGLLH----PNQITTRLTREE 392 (601)
Q Consensus 340 ---~~~~i~~v~qs~~----pgtT-~~~i~~~-------~~l--~------~~~~llDtpGL~~----~~~~~~~LSgGe 392 (601)
.++.+++++|++. |.+| .+++... ... . ...++++.+||.. .++++.+|||||
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~ 163 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGE 163 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 1246999999874 5555 3333211 000 0 1257789999974 468899999999
Q ss_pred HHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 393 QKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 393 ~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
+|||+||++| +|+++++ |+..+..+..+++.+..+.|.++++++ .+||++++|+.|++..
T Consensus 164 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive 239 (330)
T PRK15093 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE 239 (330)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999 9999999 788899999999988765577777554 5799999999999843
No 128
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.77 E-value=3.6e-19 Score=180.97 Aligned_cols=169 Identities=21% Similarity=0.331 Sum_probs=132.0
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------------------
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------------------- 338 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------------------- 338 (601)
+.++.+.|+...+++++ ++.+.+|+++. +|+||||||||+++|+|+..|++|.+.
T Consensus 3 ~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~ 81 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGL-NFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKH 81 (252)
T ss_pred EEEEEEEeCCeeEEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhH
Confidence 45666677767899999 99999997655 999999999999999999999988541
Q ss_pred --ccccceeEeeecCC--CCCc-eeeeeeecc----ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc
Q 007511 339 --EEKNIVSHLTEAPV--PGTT-LGIVRVEGV----LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 339 --~~~~~i~~v~qs~~--pgtT-~~~i~~~~~----l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL 402 (601)
..++.+++++|.+. +..| .+++.+... ... ..++++.+|+.. .++.+..||+||+||+++|++|
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 161 (252)
T TIGR03005 82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARAL 161 (252)
T ss_pred HHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHH
Confidence 12456899999865 5555 666653210 111 146788889876 6778899999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++....+.+.+++.++ .+||++++|++|++..
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 162 AMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999 788889999999987765466776443 5799999999999843
No 129
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=4.8e-19 Score=177.95 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=133.1
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeecC
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEAP 351 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs~ 351 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|..|.+. ..++.+++++|.+
T Consensus 3 ~~~l~~~~~~~~il~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (232)
T cd03300 3 LENVSKFYGGFVALDGV-SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNY 81 (232)
T ss_pred EEeEEEEeCCeeeeccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEeccc
Confidence 45666777767899999 89999997665 999999999999999999999998541 1245789999987
Q ss_pred C--CCCc-eeeeeeeccc---c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 352 V--PGTT-LGIVRVEGVL---P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l---~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
. ++.| .+++.+.... . ....+++.+|+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 ~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gL 161 (232)
T cd03300 82 ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL 161 (232)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 6 5656 6666532211 1 1146788889976 6778899999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..+++....+.+.+++.+ ..+||+++.+++|++..
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~ 211 (232)
T cd03300 162 DLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ 211 (232)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 88889999999998766446666633 35789999999999854
No 130
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3.5e-19 Score=179.37 Aligned_cols=169 Identities=21% Similarity=0.226 Sum_probs=130.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------ccccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~~~~i~~ 346 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.+++
T Consensus 6 l~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 6 LSFDKVSAHYGKIQALHEV-SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred EEEEeEEEeeCCceeeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence 5567778888777899999 99999997665 999999999999999999999999541 12456899
Q ss_pred eeecCC--CCCc-eeeeeeeccccc-------hhhhhccC-CCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe---
Q 007511 347 LTEAPV--PGTT-LGIVRVEGVLPA-------QAKLFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI--- 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~l~~-------~~~llDtp-GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL--- 409 (601)
++|.+. ++.| .+++.+...... ..++++.+ ++.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEP 164 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164 (237)
T ss_pred eccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 998765 6555 666544211111 13345555 4543 5667899999999999999999 9999999
Q ss_pred ----ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 ----KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ----D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ +.+++.+ ..+||++++|++|++.
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (237)
T PRK11614 165 SLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVV 216 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEeCCEEE
Confidence 888899999999987655 6677633 3578999999999874
No 131
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.4e-18 Score=179.81 Aligned_cols=170 Identities=21% Similarity=0.212 Sum_probs=132.5
Q ss_pred EEEEEeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCC---CCc------------ccccc
Q 007511 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR---GGD------------GEEKN 342 (601)
Q Consensus 281 V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~---G~i------------~~~~~ 342 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|.. |.+ ...++
T Consensus 6 l~i~~l~~~~~~~~~~~l~~v-~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 6 VEFKHVSFTYPDSKKPALNDI-SFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred EEEEEEEEEcCCCCccceeeE-EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 556677778854 4589999 99999997655 99999999999999999999987 543 12245
Q ss_pred ceeEeeecC---CCCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 343 IVSHLTEAP---VPGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 343 ~i~~v~qs~---~pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
.+++++|.+ .+..| .+++.+.....+ ...+++.+||.. .++.+..||+||+||++||++| +|++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~l 164 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKI 164 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 789999986 24555 777754311111 145788889876 6888999999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++| |+.....+..+++....+.|.+++.++ .+||++++|++|++.
T Consensus 165 lllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~ 222 (282)
T PRK13640 165 IILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLL 222 (282)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 999 888999999999987765466776332 368999999999974
No 132
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.77 E-value=4.2e-19 Score=177.60 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=127.8
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccc-----cCCCCCcc--------------cccc
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV-----DAGRGGDG--------------EEKN 342 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~-----~~~~G~i~--------------~~~~ 342 (601)
+.++.+.|+...+++++ ++.+.+|+++. +|+||||||||+++|+|+. +|.+|.+. ..++
T Consensus 3 ~~~l~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (227)
T cd03260 3 LRDLNVYYGDKHALKDI-SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRR 81 (227)
T ss_pred EEEEEEEcCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHh
Confidence 45666777777899999 99999997655 9999999999999999999 89988541 1235
Q ss_pred ceeEeeecCC-CCCc-eeeeeeeccc----c------chhhhhccCCCcC-cCCc--cCCCCHHHHHHhcccccc--CCC
Q 007511 343 IVSHLTEAPV-PGTT-LGIVRVEGVL----P------AQAKLFDTPGLLH-PNQI--TTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 343 ~i~~v~qs~~-pgtT-~~~i~~~~~l----~------~~~~llDtpGL~~-~~~~--~~~LSgGe~qrv~iaraL--~P~ 405 (601)
.+++++|.+. ...| .+++.+.... . ...++++.+|+.. .++. +..|||||+||+++|++| +|+
T Consensus 82 ~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (227)
T cd03260 82 RVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPE 161 (227)
T ss_pred hEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 6899999865 3344 6666542111 1 1146788889876 3444 599999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+++| |+..+..+..+++....+ .+++. +..+||++++|++|++.
T Consensus 162 llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 162 VLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLV 219 (227)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 9999 888999999999987654 45553 33578999999999874
No 133
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.77 E-value=4.9e-19 Score=180.62 Aligned_cols=170 Identities=24% Similarity=0.273 Sum_probs=135.1
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------------
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------------- 338 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------------- 338 (601)
.+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGV-SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred cEEEeeeEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 35667777888777899999 99999997654 999999999999999999999999441
Q ss_pred -----ccccceeEeeecCC--CCCc-eeeeeeec----cccc------hhhhhccCCCcC--cCCccCCCCHHHHHHhcc
Q 007511 339 -----EEKNIVSHLTEAPV--PGTT-LGIVRVEG----VLPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNI 398 (601)
Q Consensus 339 -----~~~~~i~~v~qs~~--pgtT-~~~i~~~~----~l~~------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~i 398 (601)
..++.++|++|.+. +.+| .+++.+.. .... ..++++.+|+.. .++.+..||+||+||+++
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l 163 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 163 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 11356899999875 5556 67765311 0111 246788899976 377899999999999999
Q ss_pred cccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 399 NKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 399 araL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
|++| +|++++| |+.....+..+++....+ |.+++.++ .+||++++|++|++.
T Consensus 164 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999 9999999 888999999999987655 67776443 479999999999974
No 134
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=1e-19 Score=177.81 Aligned_cols=169 Identities=19% Similarity=0.259 Sum_probs=145.0
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------ccccceeEeeecC
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------EEKNIVSHLTEAP 351 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------~~~~~i~~v~qs~ 351 (601)
+.+-++++.||...++++| ++.+++|+++. +|+|||||||.+++|+|++.|+.|.+. ..+.+|||+|...
T Consensus 3 L~ie~vtK~Fg~k~av~~i-sf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNI-SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred eEEecchhccCceeeecce-eeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 4567889999999999999 99999999877 999999999999999999999999763 3456799999876
Q ss_pred C--CCCc-eeeeeeeccccch---------hhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 352 V--PGTT-LGIVRVEGVLPAQ---------AKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l~~~---------~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
- |.+| .+.+.+.+.+.+. ..+++.+++.. ..+.+.+||.|+||++.+..++ +|++++|
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 5 8888 7877776665542 56889999987 7788999999999999988887 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
||.++..+...+..+..+ |.|+++ +..+||+++.|+.|+..
T Consensus 162 DPVN~elLk~~I~~lk~~-GatIifSsH~Me~vEeLCD~llmL~kG~~V 209 (300)
T COG4152 162 DPVNVELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLKKGQTV 209 (300)
T ss_pred ChhhHHHHHHHHHHHHhc-CCEEEEecchHHHHHHHhhhhheecCCceE
Confidence 999999999999998887 778873 45689999999999863
No 135
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=2.2e-19 Score=165.09 Aligned_cols=171 Identities=18% Similarity=0.200 Sum_probs=136.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------------cccc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------------GEEK 341 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------------~~~~ 341 (601)
|.+.+...-||..+.+-+| .+....|+..+ +||+|+||||||+.|.-+..|.+|.. ...+
T Consensus 3 irv~~in~~yg~~q~lfdi-~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 3 IQLNGINCFYGAHQALFDI-TLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred eEEcccccccccchheeee-eecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 4455667788988888898 78778887555 99999999999999998888988842 3567
Q ss_pred cceeEeeecCC--CCCc-eeeeee-ecc---cc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 342 NIVSHLTEAPV--PGTT-LGIVRV-EGV---LP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT-~~~i~~-~~~---l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
+.+|+++|... |++| .+++.. +.. +. ...+++.++.+.. .++.+-.|||||+|||+||||| +|.
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 88999999875 9988 565432 111 11 1257888999887 8999999999999999999998 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceecch
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTENA 453 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~~a 453 (601)
++++ ||.-...+..+++.+..- |.|-+. +...|++++.|.+|++.+.
T Consensus 162 vllfdeptaaldpeitaqvv~iikel~~t-gitqvivthev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVSIIKELAET-GITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred EEeecCcccccCHHHHHHHHHHHHHHHhc-CceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence 9998 888999999999988765 666542 3457899999999998543
No 136
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.1e-18 Score=175.33 Aligned_cols=167 Identities=19% Similarity=0.160 Sum_probs=128.6
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeec
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEA 350 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs 350 (601)
.+.++.+.|+.. ..++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ...+.++|++|.
T Consensus 3 ~~~~l~~~~~~~--~~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 3 KLTDITWLYHHL--PMRF-DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred EEEEEEEEECCc--ccee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 355666677643 2367 88889997665 999999999999999999999999541 123568999988
Q ss_pred CC--CCCc-eeeeeeeccc----c-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe------
Q 007511 351 PV--PGTT-LGIVRVEGVL----P-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------ 409 (601)
Q Consensus 351 ~~--pgtT-~~~i~~~~~l----~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------ 409 (601)
+. ++.| .+++.+.... . ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 159 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159 (232)
T ss_pred cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 65 6666 6666542111 1 1246788889876 6888999999999999999999 9999999
Q ss_pred -ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 -KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+.+.+++.+ ..+||+++.+++|++.
T Consensus 160 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 209 (232)
T PRK10771 160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA 209 (232)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 88889999999998766545666633 3578999999999975
No 137
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.76 E-value=1.2e-18 Score=177.64 Aligned_cols=168 Identities=17% Similarity=0.261 Sum_probs=132.2
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEee
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHLT 348 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v~ 348 (601)
.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+. ..++.++|++
T Consensus 3 ~~~~l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 3 RLSRVSWSAGGRLIVDGV-DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred eEEeEEEEECCEEEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 456677778777899999 99999997665 999999999999999999999999541 1234689999
Q ss_pred ecCC--CCCc-eeeeeeecc-----c--c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 349 EAPV--PGTT-LGIVRVEGV-----L--P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~-----l--~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
|.+. +..| .+++.+... . . ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 161 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9863 4455 666543210 0 0 1145788888876 6788999999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++....+ +.+++.++ .+||++++|++|++.
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (256)
T TIGR03873 162 DEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDGGRVV 216 (256)
T ss_pred cCccccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCEE
Confidence 788899999999987654 56666433 589999999999974
No 138
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=6.4e-19 Score=182.90 Aligned_cols=172 Identities=16% Similarity=0.143 Sum_probs=132.7
Q ss_pred ceEEEEEeEeecCCc-----cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------
Q 007511 279 TKLHFVSAVKNWGLK-----SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------- 338 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~-----~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------- 338 (601)
..+.+.++.+.|+.. .+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|.+|.+.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNT-SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 356778888888754 489999 99999997665 999999999999999999999999541
Q ss_pred ---ccccceeEeeecCC----CCCceeeeeeeccc---cc------hhhhhccCCCc-C-cCCccCCCCHHHHHHhcccc
Q 007511 339 ---EEKNIVSHLTEAPV----PGTTLGIVRVEGVL---PA------QAKLFDTPGLL-H-PNQITTRLTREEQKLVNINK 400 (601)
Q Consensus 339 ---~~~~~i~~v~qs~~----pgtT~~~i~~~~~l---~~------~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iar 400 (601)
..++.+++++|.+. +.+..+++.+.... .. ...+++.+|+. . .++.+..||+||+||+++|+
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 12346899999862 33336665442111 11 13567888884 3 67889999999999999999
Q ss_pred cc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 401 EL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 401 aL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+| +|++++| |+..+..+..+++....+.+.+++.+ ..+||++++|++|++.
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99 9999999 88889999999998765446666643 3579999999999973
No 139
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.76 E-value=1.3e-18 Score=183.75 Aligned_cols=170 Identities=15% Similarity=0.187 Sum_probs=129.4
Q ss_pred EEEEeEeecC----CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC---CCCcc------------c--
Q 007511 282 HFVSAVKNWG----LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---RGGDG------------E-- 339 (601)
Q Consensus 282 ~lvSa~kg~G----~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~---~G~i~------------~-- 339 (601)
.+.++.+.|+ ...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.++. +|.+. .
T Consensus 14 ~i~~l~~~~~~~~~~~~~l~~v-sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~ 92 (330)
T PRK09473 14 DVKDLRVTFSTPDGDVTAVNDL-NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELN 92 (330)
T ss_pred EEeCeEEEEecCCCCEEEEeee-EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHH
Confidence 4455555552 34689999 99999997665 9999999999999999999885 77431 0
Q ss_pred --cccceeEeeecCC----CCCc-eeeeeeecc----ccc------hhhhhccCCCcC----cCCccCCCCHHHHHHhcc
Q 007511 340 --EKNIVSHLTEAPV----PGTT-LGIVRVEGV----LPA------QAKLFDTPGLLH----PNQITTRLTREEQKLVNI 398 (601)
Q Consensus 340 --~~~~i~~v~qs~~----pgtT-~~~i~~~~~----l~~------~~~llDtpGL~~----~~~~~~~LSgGe~qrv~i 398 (601)
.++.+++++|++. |.+| .+++..... ... ..++++..||.. .++++++|||||+|||+|
T Consensus 93 ~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~I 172 (330)
T PRK09473 93 KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMI 172 (330)
T ss_pred HHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHH
Confidence 1247999999973 6666 443322111 111 146788888864 367899999999999999
Q ss_pred cccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 399 NKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 399 araL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
|++| +|+++++ |...+..+..+++.+..+.+.++++++ .+||++++|+.|++..
T Consensus 173 ArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 173 AMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999 9999999 888899999999988776577777443 4799999999999854
No 140
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.76 E-value=7.6e-19 Score=175.73 Aligned_cols=170 Identities=16% Similarity=0.226 Sum_probs=130.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEe
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v 347 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.++++
T Consensus 8 i~~~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 86 (225)
T PRK10247 8 LQLQNVGYLAGDAKILNNI-SFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYC 86 (225)
T ss_pred EEEeccEEeeCCceeeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEE
Confidence 5566777888777899999 99999998665 999999999999999999999999551 124568999
Q ss_pred eecCC--CCCceeeeeeeccc---c----chhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 348 TEAPV--PGTTLGIVRVEGVL---P----AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 348 ~qs~~--pgtT~~~i~~~~~l---~----~~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
+|.+. +.+..+++.+.... . ...++++.+|+.. .++.+..||+||+||++||++| +|++++|
T Consensus 87 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 87 AQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred ecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99865 44336666432111 1 1246889999953 6788999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEee--cceec
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLH--MGKTE 451 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~--~Gki~ 451 (601)
|+.....+.++++....+.+.+++.++ .+||+++.|+ .|++.
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQ 218 (225)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHh
Confidence 788899999999987765466666322 3589999885 55554
No 141
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.76 E-value=7.5e-19 Score=178.13 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=129.5
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC-----CCCcc--------------ccc
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDG--------------EEK 341 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~-----~G~i~--------------~~~ 341 (601)
.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|. +|.+. ..+
T Consensus 3 ~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 81 (247)
T TIGR00972 3 EIENLNLFYGEKEALKNI-NLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELR 81 (247)
T ss_pred EEEEEEEEECCeeeecce-eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHH
Confidence 455667777777799999 99999998665 9999999999999999999987 88441 123
Q ss_pred cceeEeeecCC--CCCc-eeeeeeeccccc----------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc-
Q 007511 342 NIVSHLTEAPV--PGTT-LGIVRVEGVLPA----------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT-~~~i~~~~~l~~----------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
+.+++++|.+. + .| .+++.+.....+ ...+++.+|+. . .++.+..||+||+||+++|++|
T Consensus 82 ~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 82 RRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred hheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 56899999865 5 45 676654211110 14578888986 4 6778899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++....+ .+++. +..+||++++|++|++.
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 222 (247)
T TIGR00972 161 VEPEVLLLDEPTSALDPIATGKIEELIQELKKK--YTIVIVTHNMQQAARISDRTAFFYDGELV 222 (247)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc--CeEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 888899999999887553 55653 33579999999999974
No 142
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.2e-18 Score=180.11 Aligned_cols=170 Identities=18% Similarity=0.215 Sum_probs=131.7
Q ss_pred EEEEEeEeecCC------ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------cc
Q 007511 281 LHFVSAVKNWGL------KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~------~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~ 340 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+..|+.|.+. ..
T Consensus 5 l~~~~l~~~~~~~~~~~~~~vl~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 5 IKCKNVSYKYESNEESTEKLALDDV-NLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred EEEeeeEEEcCCCCCCCCcceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 446677777752 4699999 99999997655 999999999999999999999999541 12
Q ss_pred ccceeEeeecCC---CCCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 341 KNIVSHLTEAPV---PGTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 341 ~~~i~~v~qs~~---pgtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
++.+++++|.+. ..+| .+++.+.... .. ..++++.+|+.. .++.+..||+||+||++||++| +|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 163 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRP 163 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 456899999863 3344 5555442111 11 146788889976 6788999999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++++| |+..+..+..+++....+.+.+++.++ ..||++++|++|++.
T Consensus 164 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~ 223 (280)
T PRK13633 164 ECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVV 223 (280)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEE
Confidence 99999 889999999999987655466776332 248999999999973
No 143
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=6.7e-19 Score=174.63 Aligned_cols=164 Identities=21% Similarity=0.236 Sum_probs=128.3
Q ss_pred EEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------ccccceeE
Q 007511 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------------EEKNIVSH 346 (601)
Q Consensus 284 vSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------------~~~~~i~~ 346 (601)
.++++.|+...+ ++ ++.+.+ ++++ +|+||+|||||+++|+|+.+|++|.+. ..++.+++
T Consensus 4 ~~l~~~~~~~~~--~v-sl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 4 VDIEKRLPDFTL--KI-DFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeeEecCCeee--Cc-eEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 477788887665 77 888888 7655 999999999999999999999998541 12346899
Q ss_pred eeecCC--CCCc-eeeeeeeccc-c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 347 LTEAPV--PGTT-LGIVRVEGVL-P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~l-~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
++|.+. ++.| .+++.+.... . ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 159 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPF 159 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999875 5656 6666542111 1 1246788899976 6778999999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++....+.+.+++.++ .+||++++|++|++.
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 160 SALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 888899999999988765466666333 578999999999874
No 144
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.4e-18 Score=178.61 Aligned_cols=171 Identities=16% Similarity=0.184 Sum_probs=131.9
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i 344 (601)
.+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.+
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~i-sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDV-SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 3567788888864 3489999 99999997665 999999999999999999999999541 224568
Q ss_pred eEeeecC---CCCCc-eeeeeeecc---cc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 345 SHLTEAP---VPGTT-LGIVRVEGV---LP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 345 ~~v~qs~---~pgtT-~~~i~~~~~---l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
++++|.+ .+++| .+++.+... .. ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII 165 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999986 25555 555443211 11 1146788889876 6778999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
| |+.....+..+++....+.+.+++.++ ..||++++|++|++.
T Consensus 166 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~ 221 (269)
T PRK13648 166 LDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVY 221 (269)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEE
Confidence 9 888899999999887655466666221 248999999999974
No 145
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.76 E-value=1.3e-18 Score=189.77 Aligned_cols=165 Identities=19% Similarity=0.288 Sum_probs=131.4
Q ss_pred ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC----CCCc----------------cccccceeEeeecC
Q 007511 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG----RGGD----------------GEEKNIVSHLTEAP 351 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~----~G~i----------------~~~~~~i~~v~qs~ 351 (601)
..+++++ ++.+.+|+++. ||.|||||||+.++|.|+.++. +|.+ ....+.|++++|++
T Consensus 22 ~~~v~~v-sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p 100 (539)
T COG1123 22 VPAVRDV-SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP 100 (539)
T ss_pred eeeeecc-eEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCc
Confidence 4689999 99999998766 9999999999999999999876 4643 12346799999998
Q ss_pred C----CCCceee-eeeeccccc----------hhhhhccCCCcC-c--CCccCCCCHHHHHHhcccccc--CCCEEEe--
Q 007511 352 V----PGTTLGI-VRVEGVLPA----------QAKLFDTPGLLH-P--NQITTRLTREEQKLVNINKEL--KPRTYRI-- 409 (601)
Q Consensus 352 ~----pgtT~~~-i~~~~~l~~----------~~~llDtpGL~~-~--~~~~~~LSgGe~qrv~iaraL--~P~lllL-- 409 (601)
+ |.+|.++ +........ ..++++..||.+ . ++++++|||||+|||+||+|| +|+++++
T Consensus 101 ~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDE 180 (539)
T COG1123 101 MTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE 180 (539)
T ss_pred hhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECC
Confidence 6 7677433 221111111 257899999987 2 459999999999999999999 9999998
Q ss_pred -----ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc---hHHHHH
Q 007511 410 -----KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN---ACTMVE 458 (601)
Q Consensus 410 -----D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~---a~e~~~ 458 (601)
|+..+..|.++++.+..+.|.+++++ ..+||++++|+.|++.+ .++++.
T Consensus 181 PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 181 PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 88889999999999998888888854 46899999999999844 344544
No 146
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.6e-19 Score=195.88 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=134.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-------------cccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------------EKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------------~~~~i~~ 346 (601)
+.+.++.+.|+...+++++ ++.+..|++++ +|+||||||||+++|+|+.+|++|.+.. .++.+++
T Consensus 6 l~~~~l~~~~~~~~il~~v-s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 84 (510)
T PRK09700 6 ISMAGIGKSFGPVHALKSV-NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84 (510)
T ss_pred EEEeeeEEEcCCeEEeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE
Confidence 5567788888877899999 99999997655 9999999999999999999999996511 1246899
Q ss_pred eeecCC--CCCc-eeeeeeecc----c------c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 347 LTEAPV--PGTT-LGIVRVEGV----L------P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~----l------~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
++|.+. +..| .+++.+... . . ...++++.+||.. .++.+..|||||+|||+||++| +|
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p 164 (510)
T PRK09700 85 IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA 164 (510)
T ss_pred EeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 999864 6656 666654210 0 0 0145788899976 6888999999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeeccee
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKT 450 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki 450 (601)
++++| |+..+..+..+++....+ |.+++.+ ..+||++++|++|++
T Consensus 165 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999 899999999999988765 6677633 357999999999987
No 147
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1e-18 Score=195.13 Aligned_cols=168 Identities=20% Similarity=0.253 Sum_probs=134.1
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccC--CCCCcc-------------ccccce
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDA--GRGGDG-------------EEKNIV 344 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~--~~G~i~-------------~~~~~i 344 (601)
+.+.++.+.|+...+++++ ++.+..|+++ ++|+||||||||+|+|+|+.+| ++|.+. ..++.+
T Consensus 6 l~~~nl~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 6 LEMKNITKTFGGVKALDNV-SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred EEEeeeEEEeCCeEeecce-eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence 5567778888877899999 9999999765 4999999999999999999986 688541 113569
Q ss_pred eEeeecCC--CCCc-eeeeeeeccc------cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 345 SHLTEAPV--PGTT-LGIVRVEGVL------PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 345 ~~v~qs~~--pgtT-~~~i~~~~~l------~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
++++|.+. +.+| .+++.+.... .. ..++++.+|+.. .++.+..|||||+||+++|++| +|++
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l 164 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL 164 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999864 6666 6766543211 10 146788899975 6888999999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
++| |+..+..+..+++....+ +.+++. +..+||++++|++|++
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~~~~d~v~~l~~G~i 221 (506)
T PRK13549 165 LILDEPTASLTESETAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRDGRH 221 (506)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHhcCEEEEEECCEE
Confidence 999 899999999999988654 666663 3357999999999986
No 148
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=8e-19 Score=182.10 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=129.8
Q ss_pred EEEEeEeecCC-----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------c
Q 007511 282 HFVSAVKNWGL-----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------------E 339 (601)
Q Consensus 282 ~lvSa~kg~G~-----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------------~ 339 (601)
.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. .
T Consensus 3 ~~~~v~~~y~~~~~~~~~~l~~v-sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 3 KFEKVNYTYQPNSPFASRALFDI-DLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEeCCCCcccccceeee-EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 45566666652 2489999 99999997555 999999999999999999999999541 1
Q ss_pred cccceeEeeecCC----CCCceeeeeeecc---ccc------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--
Q 007511 340 EKNIVSHLTEAPV----PGTTLGIVRVEGV---LPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 340 ~~~~i~~v~qs~~----pgtT~~~i~~~~~---l~~------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
.++.+++++|.+. +.+..+++.+... ... ..++++.+||.. .++.+..||+||+||++||++|
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~ 161 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAM 161 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHh
Confidence 2456899999762 3333777654321 111 146788889953 5788999999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++.+..+ |.|++.+ ..+||++++|++|++.
T Consensus 162 ~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~~G~i~ 223 (288)
T PRK13643 162 EPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHII 223 (288)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 888899999999887655 6777743 3579999999999983
No 149
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.76 E-value=7.9e-19 Score=180.18 Aligned_cols=170 Identities=19% Similarity=0.269 Sum_probs=128.9
Q ss_pred EEEEEeEeecC---------CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------
Q 007511 281 LHFVSAVKNWG---------LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------ 338 (601)
Q Consensus 281 V~lvSa~kg~G---------~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------ 338 (601)
+.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||+|||||+++|+|+++|.+|.+.
T Consensus 5 l~~~~l~~~~~~~~~~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPL-SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred EEEeceEEEecCCCCcccccccceeeee-eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 44556666664 24689999 99999997665 999999999999999999999999541
Q ss_pred ccccceeEeeecCC----CCCc-eeeeeeecc----cc------chhhhhccCCCc-C-cCCccCCCCHHHHHHhccccc
Q 007511 339 EEKNIVSHLTEAPV----PGTT-LGIVRVEGV----LP------AQAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKE 401 (601)
Q Consensus 339 ~~~~~i~~v~qs~~----pgtT-~~~i~~~~~----l~------~~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iara 401 (601)
..++.+++++|.+. +..| .+++.+... .. ...++++.+|+. . .++.+..||+||+||+++|++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 163 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARA 163 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHH
Confidence 11246899999762 4444 333322111 11 124678999994 3 577789999999999999999
Q ss_pred c--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 402 L--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 402 L--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
| +|++++| |+.....+.++++....+.+.+++.++ .+||++++|++|++.
T Consensus 164 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~ 229 (267)
T PRK15112 164 LILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229 (267)
T ss_pred HHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9 9999999 788899999999987765466666433 479999999999974
No 150
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.76 E-value=8.8e-19 Score=174.56 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=129.1
Q ss_pred EEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------ccc
Q 007511 282 HFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EEK 341 (601)
Q Consensus 282 ~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~~ 341 (601)
.+.++.+.|+. ..+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|++|.+. ..+
T Consensus 3 ~~~~l~~~~~~~~~~~~il~~v-s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 3 SIRNLNHYYGHGSLRKQVLFDI-NLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEccCCCcceeEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 34555556653 5699999 99999997655 999999999999999999999999541 123
Q ss_pred cceeEeeecCC--CCCc-eeeeeeecccc----------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 342 NIVSHLTEAPV--PGTT-LGIVRVEGVLP----------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT-~~~i~~~~~l~----------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
+.+++++|.+. +.+| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|++| +|+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 56899999875 5455 66554321111 1256788999976 6778899999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEE------EEeecCEEEeeccee
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYV------TVWASPYLPLHMGKT 450 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~------~~~ad~vl~l~~Gki 450 (601)
+++| |+..+..+..+++....+.+.+++.+ ..+||+++.|++|++
T Consensus 162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999 78889999999998776446666633 247899999998864
No 151
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.76 E-value=1e-18 Score=176.10 Aligned_cols=169 Identities=21% Similarity=0.276 Sum_probs=132.7
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeecC
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEAP 351 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs~ 351 (601)
+.++...|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.++..|.+. ..++.+++++|.+
T Consensus 3 i~~l~~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~ 81 (237)
T TIGR00968 3 IANISKRFGSFQALDDV-NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHY 81 (237)
T ss_pred EEEEEEEECCeeeeeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecCh
Confidence 44566667777899999 99999997765 999999999999999999999999541 2245689999887
Q ss_pred C--CCCc-eeeeeeeccc---c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 352 V--PGTT-LGIVRVEGVL---P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l---~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
. ++.| .+++.+.... . ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++|
T Consensus 82 ~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~L 161 (237)
T TIGR00968 82 ALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGAL 161 (237)
T ss_pred hhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 5 6656 6666542211 1 1146788888865 6778899999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
|+.....+..++.....+.+.+++.+ ..+||+++.+++|++..
T Consensus 162 D~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~ 211 (237)
T TIGR00968 162 DAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ 211 (237)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 88889999999998766545666633 46799999999999843
No 152
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.76 E-value=9.7e-19 Score=178.91 Aligned_cols=170 Identities=15% Similarity=0.229 Sum_probs=132.1
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCC---CCcc-----------------c
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR---GGDG-----------------E 339 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~---G~i~-----------------~ 339 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+. |.+. .
T Consensus 5 l~~~nl~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 5 IRVEKLAKTFNQHQALHAV-DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EEEeeEEEEeCCeEEEecc-eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 4566777778778899999 99999997655 99999999999999999998764 5321 1
Q ss_pred cccceeEeeecCC--CCCc-eeeeeeecc------------cc-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcc
Q 007511 340 EKNIVSHLTEAPV--PGTT-LGIVRVEGV------------LP-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNI 398 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT-~~~i~~~~~------------l~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~i 398 (601)
.++.+++++|.+. +++| .+++.+... .. ...++++.+|+.. .++.+..||+||+||+++
T Consensus 84 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 163 (262)
T PRK09984 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163 (262)
T ss_pred HHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHH
Confidence 1346899999865 6656 666543210 01 1256788889865 678899999999999999
Q ss_pred cccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 399 NKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 399 araL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|++| +|++++| |+.....+..+++....+.|.+++.+ ..+||+++++++|++.
T Consensus 164 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~ 232 (262)
T PRK09984 164 ARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF 232 (262)
T ss_pred HHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999 9999999 88889999999998876546676633 3579999999999884
No 153
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.75 E-value=4.6e-19 Score=164.14 Aligned_cols=162 Identities=19% Similarity=0.276 Sum_probs=131.8
Q ss_pred CCccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEeeecCC--CCC
Q 007511 291 GLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHLTEAPV--PGT 355 (601)
Q Consensus 291 G~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v~qs~~--pgt 355 (601)
+...+++.+ ++.+.+|+ +.+.||+|||||||+++++.++.|++|.+ ...+..|+|+.|.+. ++|
T Consensus 14 ~~a~il~~i-sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~t 92 (223)
T COG4619 14 GDAKILNNI-SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDT 92 (223)
T ss_pred CCCeeecce-eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccc
Confidence 456788888 88888886 66799999999999999999999999954 456778899999887 777
Q ss_pred ceeeeeeeccccch-------hhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHH
Q 007511 356 TLGIVRVEGVLPAQ-------AKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHI 417 (601)
Q Consensus 356 T~~~i~~~~~l~~~-------~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l 417 (601)
..+|+.++..+... ..++..+++.+ ..+.+..|||||+||++++|.| -|++++| |+.+...+
T Consensus 93 VeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~i 172 (223)
T COG4619 93 VEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI 172 (223)
T ss_pred hhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHH
Confidence 79998887544332 56788888877 7778999999999999999999 8999999 88899999
Q ss_pred HHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecch
Q 007511 418 AGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTENA 453 (601)
Q Consensus 418 ~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~a 453 (601)
..++..++.+...+++.+ ...+++++.+..|.+.+.
T Consensus 173 e~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~~ 215 (223)
T COG4619 173 EEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGEM 215 (223)
T ss_pred HHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccccc
Confidence 999988876556666643 457788888887776443
No 154
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.75 E-value=3.4e-18 Score=174.50 Aligned_cols=171 Identities=19% Similarity=0.246 Sum_probs=130.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----c----------------
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----E---------------- 339 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----~---------------- 339 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+. .
T Consensus 7 l~~~~l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~ 85 (258)
T PRK11701 7 LSVRGLTKLYGPRKGCRDV-SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85 (258)
T ss_pred EEEeeeEEEcCCceeeeee-eEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHH
Confidence 5567777888777899999 99999997655 999999999999999999999999541 1
Q ss_pred -cccceeEeeecCC----CCCc-eeeeeeec---c-cc------chhhhhccCCCcC--cCCccCCCCHHHHHHhccccc
Q 007511 340 -EKNIVSHLTEAPV----PGTT-LGIVRVEG---V-LP------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKE 401 (601)
Q Consensus 340 -~~~~i~~v~qs~~----pgtT-~~~i~~~~---~-l~------~~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iara 401 (601)
.++.++|++|++. +..| .+++.... . .. ...++++.+|+.. .++.+..||+||+||+++|++
T Consensus 86 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN 165 (258)
T ss_pred HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence 1235899999863 3333 33432110 0 00 1146788899963 578899999999999999999
Q ss_pred c--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 402 L--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 402 L--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
| +|++++| |+.....+..+++....+.+.+++.++ .+||+++.+++|++..
T Consensus 166 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 166 LVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9 9999999 788889999999887665466776443 4799999999999843
No 155
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1e-18 Score=180.10 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=131.1
Q ss_pred EEEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------cccccee
Q 007511 282 HFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIVS 345 (601)
Q Consensus 282 ~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i~ 345 (601)
.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.++.+|.+. ..++.++
T Consensus 3 ~~~~l~~~~~~~~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 3 ETRDLKYSYPDGTEALKGI-NFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEeCCCCeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 3556667775 34689999 99999997665 999999999999999999999999541 1245689
Q ss_pred EeeecC---C-CCCceeeeeeecc---cc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 346 HLTEAP---V-PGTTLGIVRVEGV---LP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 346 ~v~qs~---~-pgtT~~~i~~~~~---l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
|++|.+ . +.+..+++.+... .. ...++++.+|+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 161 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVL 161 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999985 2 3333676654211 11 1246788899976 6788999999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ +.+++.+ ..+||++++|++|++.
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~ 216 (275)
T PRK13639 162 DEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKII 216 (275)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 889999999999987665 6677633 3479999999999873
No 156
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.3e-18 Score=182.85 Aligned_cols=169 Identities=15% Similarity=0.155 Sum_probs=131.9
Q ss_pred EEEEEeEeecCC-----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------
Q 007511 281 LHFVSAVKNWGL-----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------- 338 (601)
Q Consensus 281 V~lvSa~kg~G~-----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------- 338 (601)
+.+.++.+.|+. ..+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|.+|.+.
T Consensus 22 l~~~nl~~~y~~~~~~~~~~L~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 22 LRVKNLYCVFDEKQENELVALNNI-SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred EEEEeEEEEeCCCCcccccceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 556777777753 3599999 99999997655 999999999999999999999999541
Q ss_pred ------------ccccceeEeeecC---C-CCCceeeeeeecc---ccc------hhhhhccCCCc-C-cCCccCCCCHH
Q 007511 339 ------------EEKNIVSHLTEAP---V-PGTTLGIVRVEGV---LPA------QAKLFDTPGLL-H-PNQITTRLTRE 391 (601)
Q Consensus 339 ------------~~~~~i~~v~qs~---~-pgtT~~~i~~~~~---l~~------~~~llDtpGL~-~-~~~~~~~LSgG 391 (601)
..++.+++++|.+ . +.+..+++.+... ... ..++++.+||. . .++.+..||||
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 180 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGG 180 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHH
Confidence 1245689999986 2 4433676654311 111 14578889996 3 67889999999
Q ss_pred HHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 392 EQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 392 e~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+||++||++| +|++++| |+.....+..+++....+ +.|++.+ ..+||++++|++|++.
T Consensus 181 qkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~~adri~vl~~G~i~ 255 (320)
T PRK13631 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKIL 255 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999 9999999 888999999999887655 6677633 3579999999999973
No 157
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.3e-18 Score=193.99 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=134.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------ccccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~~~~i~~ 346 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++|
T Consensus 5 l~~~~l~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 83 (501)
T PRK11288 5 LSFDGIGKTFPGVKALDDI-SFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83 (501)
T ss_pred EEEeeeEEEECCEEEEeee-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence 4566778888777899999 99999997655 999999999999999999999999652 12356899
Q ss_pred eeecCC--CCCc-eeeeeeecc------cc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 347 LTEAPV--PGTT-LGIVRVEGV------LP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~------l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
++|.+. ++.| .+++.+... .. ...++++.+|+.. .++.+..|||||+||++||++| +|++++
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 163 (501)
T PRK11288 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIA 163 (501)
T ss_pred EEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 999864 6656 666654210 11 1146788899975 6788999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
| |+.....+..+++....+ |.+++.+ ..+||++++|++|++.
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 164 FDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9 788899999999987655 6677643 3579999999999873
No 158
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.75 E-value=1.7e-18 Score=174.79 Aligned_cols=167 Identities=20% Similarity=0.163 Sum_probs=125.3
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccc--cCCCCCcc------------c-cccceeE
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDG------------E-EKNIVSH 346 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~--~~~~G~i~------------~-~~~~i~~ 346 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+. +|++|.+. . .+..+++
T Consensus 3 ~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGV-NLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFL 81 (243)
T ss_pred EeeEEEEECCEEEEecc-ceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEe
Confidence 44566777767799999 99999997655 9999999999999999995 68888541 1 1234788
Q ss_pred eeecCC--CCCc-eeeeeeecc----------cc------chhhhhccCCCcC--cCCccC-CCCHHHHHHhcccccc--
Q 007511 347 LTEAPV--PGTT-LGIVRVEGV----------LP------AQAKLFDTPGLLH--PNQITT-RLTREEQKLVNINKEL-- 402 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~----------l~------~~~~llDtpGL~~--~~~~~~-~LSgGe~qrv~iaraL-- 402 (601)
++|.+. +++| .+++.+... .. ...++++.+|+.. .++.+. .||+||+||+++|++|
T Consensus 82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~ 161 (243)
T TIGR01978 82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL 161 (243)
T ss_pred eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc
Confidence 988865 6665 444432100 00 1145778888863 566676 5999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------Ee-ecCEEEeecceec
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VW-ASPYLPLHMGKTE 451 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~-ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++....+ +.+++.++ .+ ||++++|++|++.
T Consensus 162 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~ 224 (243)
T TIGR01978 162 EPKLAILDEIDSGLDIDALKIVAEGINRLREP-DRSFLIITHYQRLLNYIKPDYVHVLLDGRIV 224 (243)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CcEEEEEEecHHHHHhhcCCeEEEEeCCEEE
Confidence 9999999 888899999999987654 56776443 35 7999999999874
No 159
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.75 E-value=6.6e-19 Score=177.47 Aligned_cols=162 Identities=13% Similarity=0.176 Sum_probs=123.6
Q ss_pred ecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEee-ecC-C-C
Q 007511 289 NWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLT-EAP-V-P 353 (601)
Q Consensus 289 g~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~-qs~-~-p 353 (601)
.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.+++++ +.+ . +
T Consensus 30 ~~~~~~il~~v-s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 30 KYREVEALKGI-SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred ccCCeeeeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 34556688898 88889997655 999999999999999999999999642 1234688887 432 2 5
Q ss_pred CCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccch
Q 007511 354 GTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGH 413 (601)
Q Consensus 354 gtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~ 413 (601)
..| .+++.+.... .. ...+++.+|+.. .++.+..||+||+||+++|++| +|++++| |+..
T Consensus 109 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 188 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188 (236)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 555 5555332111 11 145788889876 6778899999999999999999 9999999 8899
Q ss_pred HHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 414 SIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 414 ~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+..+..+++....+.+.+++.+ ..+||+++.+++|++.
T Consensus 189 ~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 233 (236)
T cd03267 189 QENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEE
Confidence 9999999998876546676633 3578999999999874
No 160
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.2e-18 Score=180.01 Aligned_cols=169 Identities=18% Similarity=0.194 Sum_probs=129.9
Q ss_pred EEEEEeEeecCC-----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------
Q 007511 281 LHFVSAVKNWGL-----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------- 338 (601)
Q Consensus 281 V~lvSa~kg~G~-----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------- 338 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDV-NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 345666777753 3589999 99999997655 999999999999999999999999541
Q ss_pred ccccceeEeeecC---C-CCCceeeeeeecc---ccc------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc-
Q 007511 339 EEKNIVSHLTEAP---V-PGTTLGIVRVEGV---LPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 339 ~~~~~i~~v~qs~---~-pgtT~~~i~~~~~---l~~------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL- 402 (601)
..++.++|++|.+ . +.+..+++.+... ... ..++++.+|+.. .++.+..||+||+||+++|++|
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 1235689999985 2 4333676654211 111 135678889963 5788999999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++....+ +.+++.++ .+||++++|++|++.
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 224 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLV 224 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEECCEEE
Confidence 9999999 788899999999887654 66776443 578999999999874
No 161
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.75 E-value=1.1e-18 Score=195.48 Aligned_cols=168 Identities=16% Similarity=0.206 Sum_probs=130.7
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccc--cCCCCCccc--------------------
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDGE-------------------- 339 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~--~~~~G~i~~-------------------- 339 (601)
+.++.+.|+...+++++ ++.+..|++++ +|+||||||||+++|+|+. .|++|.+..
T Consensus 3 ~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~ 81 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNI-SFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEP 81 (520)
T ss_pred EEEEEEEECCeEeeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccc
Confidence 45666777777899999 99999997655 9999999999999999997 688775321
Q ss_pred -------------------------cccceeEeeec-CC--CCCc-eeeeeeecc---ccc------hhhhhccCCCcC-
Q 007511 340 -------------------------EKNIVSHLTEA-PV--PGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH- 380 (601)
Q Consensus 340 -------------------------~~~~i~~v~qs-~~--pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~- 380 (601)
.++.+++++|. +. +..| .+++.+... ... ..++++.+||..
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 161 (520)
T TIGR03269 82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHR 161 (520)
T ss_pred cccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence 13458999996 22 5555 666654211 111 146788899976
Q ss_pred cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEE
Q 007511 381 PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLP 444 (601)
Q Consensus 381 ~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~ 444 (601)
.++.+.+|||||+|||+||++| +|++++| |+..+..+..+++....+.|.+++.+ ..+||+++.
T Consensus 162 ~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~ 241 (520)
T TIGR03269 162 ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIW 241 (520)
T ss_pred hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 6788999999999999999999 9999999 89999999999998866546677633 358999999
Q ss_pred eecceec
Q 007511 445 LHMGKTE 451 (601)
Q Consensus 445 l~~Gki~ 451 (601)
|++|++.
T Consensus 242 l~~G~i~ 248 (520)
T TIGR03269 242 LENGEIK 248 (520)
T ss_pred EeCCEEe
Confidence 9999973
No 162
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=3.5e-18 Score=176.35 Aligned_cols=170 Identities=16% Similarity=0.193 Sum_probs=131.7
Q ss_pred EEEEEeEeecCC---ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccce
Q 007511 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIV 344 (601)
Q Consensus 281 V~lvSa~kg~G~---~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i 344 (601)
+.+.++.+.|+. ..+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|.+|.+. ..++.+
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~v-~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 5 LEVENLVFKYEKESDVNQLNGV-SFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred EEEEEEEEEcCCCCcCeeeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 456677777763 2489999 99999997655 999999999999999999999999541 234568
Q ss_pred eEeeecC---CCCCc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 345 SHLTEAP---VPGTT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 345 ~~v~qs~---~pgtT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
++++|.+ .+..| .+++.+... ... ...+++..|+.. .++.+..||+||+||++||++| +|++++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~lll 163 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII 163 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999986 35545 777654211 111 145778888866 6778999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
| |+.....+..+++....+.|.+++.++ ..||++++|++|++.
T Consensus 164 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~ 219 (277)
T PRK13642 164 LDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEII 219 (277)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 9 888999999999987765466776322 368999999999973
No 163
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.6e-18 Score=176.02 Aligned_cols=168 Identities=18% Similarity=0.211 Sum_probs=129.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCc------------ccccc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGD------------GEEKN 342 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i------------~~~~~ 342 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.++ .+|.+ ...++
T Consensus 4 l~~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGV-NLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred EEEEeeEEEECCeeeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 4566777788777899999 99999997655 999999999999999999874 57744 12345
Q ss_pred ceeEeeecCC--CCCc-eeeeeeeccc-----c-c-----hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc-
Q 007511 343 IVSHLTEAPV--PGTT-LGIVRVEGVL-----P-A-----QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 343 ~i~~v~qs~~--pgtT-~~~i~~~~~l-----~-~-----~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL- 402 (601)
.+++++|.+. +..| .+++.+.... . . ..++++.+|+.. .++.+..|||||+||+++|++|
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 7899999874 5566 7776532111 1 0 145678888742 5778899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++... + +.+++.+ ..+||++++|++|++.
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIV 224 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEE
Confidence 9999999 8889999999998874 3 5666633 3578999999999974
No 164
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.2e-18 Score=198.85 Aligned_cols=170 Identities=16% Similarity=0.182 Sum_probs=132.6
Q ss_pred EEEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc----------------
Q 007511 281 LHFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE---------------- 339 (601)
Q Consensus 281 V~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~---------------- 339 (601)
+.+.++.+.|+. ..++++| ++.+..|++++ ||+||||||||+++|+|+++|+.|.+..
T Consensus 13 l~v~~l~~~y~~~~~~~~~l~~i-s~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 13 LAVENLNIAFMQEQQKIAAVRNL-SFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred EEEeceEEEecCCCCceeEEEee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 445566666742 4689999 99999997655 9999999999999999999998885310
Q ss_pred ----------cccceeEeeecC----CCCCc-eeeeeeeccc----cc------hhhhhccCCCcC----cCCccCCCCH
Q 007511 340 ----------EKNIVSHLTEAP----VPGTT-LGIVRVEGVL----PA------QAKLFDTPGLLH----PNQITTRLTR 390 (601)
Q Consensus 340 ----------~~~~i~~v~qs~----~pgtT-~~~i~~~~~l----~~------~~~llDtpGL~~----~~~~~~~LSg 390 (601)
.++.+++++|.+ .|.+| .+++.+.... .. ..++++.+||.. .++++++|||
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSg 171 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSG 171 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCH
Confidence 123689999986 26666 6666543211 11 146788899953 5788999999
Q ss_pred HHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 391 EEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 391 Ge~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
||+|||+||++| +|++++| |+..+..+..+++.+..+.|.+++.+ ..+||++++|++|++.
T Consensus 172 Gq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 172 GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 999999999999 9999999 88899999999999876656777743 3589999999999984
No 165
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.75 E-value=1.5e-18 Score=177.96 Aligned_cols=169 Identities=19% Similarity=0.261 Sum_probs=128.8
Q ss_pred EEEEeEeecC---------CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------
Q 007511 282 HFVSAVKNWG---------LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------- 338 (601)
Q Consensus 282 ~lvSa~kg~G---------~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------- 338 (601)
.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+.
T Consensus 4 ~~~~l~~~~~~~~~~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 4 EVRDVTHTYRTGGLFGAKQRAPVLTNV-SLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEeEEEEeccCccccccCceEEeeCc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 3445556664 35689999 99999997665 999999999999999999999999541
Q ss_pred --ccccceeEeeecC---C-CCCc-eeeeeeec----cccc------hhhhhccCCCc-C-cCCccCCCCHHHHHHhccc
Q 007511 339 --EEKNIVSHLTEAP---V-PGTT-LGIVRVEG----VLPA------QAKLFDTPGLL-H-PNQITTRLTREEQKLVNIN 399 (601)
Q Consensus 339 --~~~~~i~~v~qs~---~-pgtT-~~~i~~~~----~l~~------~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~ia 399 (601)
..++.+++++|.+ . +..| .+++.+.. .+.. ..++++.+|+. . .++.+..||+||+||+++|
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~la 162 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIA 162 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH
Confidence 1235699999985 2 4555 55543211 0111 14678889995 3 6788999999999999999
Q ss_pred ccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 400 KEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 400 raL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
++| +|++++| |+.....+..+++....+.+.+++.++ .+||++++|++|++.
T Consensus 163 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 230 (265)
T TIGR02769 163 RALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230 (265)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEE
Confidence 999 9999999 788888899999987765466766433 479999999999874
No 166
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.75 E-value=1.8e-18 Score=192.31 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=130.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc------------cccceeEe
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE------------EKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~------------~~~~i~~v 347 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+|+|+|+.+|++|.+.. .++.++++
T Consensus 4 l~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 4 LQISQGTFRLSDTKTLQLP-SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEEEeEEEEcCCeeecccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 4566788888877899999 99999997655 9999999999999999999999996521 12347888
Q ss_pred eecCCC----------CCc-eeeeeeeccc-cchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe---
Q 007511 348 TEAPVP----------GTT-LGIVRVEGVL-PAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI--- 409 (601)
Q Consensus 348 ~qs~~p----------gtT-~~~i~~~~~l-~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL--- 409 (601)
+|.+.. +.| .+++...... ....++++.+|+.. .++.+..|||||+||++||++| +|++++|
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP 162 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 886431 233 3332211000 11256888999976 7888999999999999999999 9999999
Q ss_pred ----ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 410 ----KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 410 ----D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
|+..+..+..+++....+ |.+++. +..+||++++|++|++
T Consensus 163 t~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~~G~i 213 (490)
T PRK10938 163 FDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTL 213 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 899999999999988765 667663 3457899999999987
No 167
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.4e-18 Score=174.92 Aligned_cols=167 Identities=22% Similarity=0.237 Sum_probs=130.2
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeecC
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEAP 351 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs~ 351 (601)
+.++...|+.. +++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+. ..++.+++++|.+
T Consensus 3 ~~~l~~~~~~~-~l~~i-s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~ 80 (235)
T cd03299 3 VENLSKDWKEF-KLKNV-SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNY 80 (235)
T ss_pred eEeEEEEeCCc-eeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecC
Confidence 34555666543 79999 89999997655 999999999999999999999999541 1245789999986
Q ss_pred C--CCCc-eeeeeeecccc---------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 352 V--PGTT-LGIVRVEGVLP---------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l~---------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
. +..| .+++.+..... ...++++.+|+.. .++.+..||+||+||++||+++ +|++++|
T Consensus 81 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gL 160 (235)
T cd03299 81 ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSAL 160 (235)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccC
Confidence 5 5556 66665422111 0146788889876 6788999999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+.+.+++.+ ..+||++++|++|++.
T Consensus 161 D~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~ 209 (235)
T cd03299 161 DVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLI 209 (235)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 88899999999998766546676633 3578999999999974
No 168
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.74 E-value=5.2e-18 Score=168.82 Aligned_cols=168 Identities=17% Similarity=0.197 Sum_probs=125.4
Q ss_pred EEEEEeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------cccccee
Q 007511 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~ 345 (601)
+.+.++.+.|+. ..+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|+.|.+. ..++.++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i-~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNV-SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEEEcCCCCcccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 556777778864 4689999 89999998665 999999999999999999999999541 1234689
Q ss_pred EeeecCC-CCCc-eeeeeeecccc---chhhhhccCCCcC-cCC-----------ccCCCCHHHHHHhcccccc--CCCE
Q 007511 346 HLTEAPV-PGTT-LGIVRVEGVLP---AQAKLFDTPGLLH-PNQ-----------ITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 346 ~v~qs~~-pgtT-~~~i~~~~~l~---~~~~llDtpGL~~-~~~-----------~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
+++|.+. ...| .+++.+..... ...++++..|+.. .++ .+..|||||+||+++|+++ +|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999876 2234 66664421111 1134566667654 222 3469999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++| |+..+..+..+++....+ .+++.++ .+||+++.+++|++.
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~d~v~~l~~g~i~ 217 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGD--KTLIIITHRPSLLDLVDRIIVMDSGRIV 217 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCC--CEEEEEeCCHHHHHhCCEEEEEeCCeEe
Confidence 999 888999999999987543 4555322 478999999999863
No 169
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.74 E-value=4.3e-18 Score=167.34 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=116.1
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEeeec
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLTEA 350 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~qs 350 (601)
+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|++|.+. ..++.+++++|.
T Consensus 3 i~~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (201)
T cd03231 3 ADELTCERDGRALFSGL-SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHA 81 (201)
T ss_pred EEEEEEEeCCceeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccc
Confidence 34566677777899999 99999997655 999999999999999999999999551 123568899887
Q ss_pred CC--CCCc-eeeeeeecccc---chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchH
Q 007511 351 PV--PGTT-LGIVRVEGVLP---AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHS 414 (601)
Q Consensus 351 ~~--pgtT-~~~i~~~~~l~---~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~ 414 (601)
+. +..| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++| |+...
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~ 161 (201)
T cd03231 82 PGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161 (201)
T ss_pred cccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 64 4455 66654421111 1256788888876 6778999999999999999999 9999999 88889
Q ss_pred HHHHHHHHHHHHhcCceEEE
Q 007511 415 IHIAGLMRMDVEESSVESIY 434 (601)
Q Consensus 415 ~~l~~lir~~~~~~g~tii~ 434 (601)
..+.++++....+ +.+++.
T Consensus 162 ~~l~~~l~~~~~~-g~tiii 180 (201)
T cd03231 162 ARFAEAMAGHCAR-GGMVVL 180 (201)
T ss_pred HHHHHHHHHHHhC-CCEEEE
Confidence 9999999877655 556553
No 170
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.74 E-value=3.9e-18 Score=167.18 Aligned_cols=153 Identities=16% Similarity=0.223 Sum_probs=117.8
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEeeec
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLTEA 350 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~qs 350 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|..|.+. ..++.+++++|.
T Consensus 3 ~~~l~~~~~~~~~l~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (198)
T TIGR01189 3 ARNLACSRGERMLFEGL-SFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHL 81 (198)
T ss_pred EEEEEEEECCEEEEeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccC
Confidence 34566677777899999 99999998665 999999999999999999999999541 123568898886
Q ss_pred CC--CCCc-eeeeeeecccc-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccc
Q 007511 351 PV--PGTT-LGIVRVEGVLP-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAG 412 (601)
Q Consensus 351 ~~--pgtT-~~~i~~~~~l~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~ 412 (601)
.. +..| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++| |+.
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~ 161 (198)
T TIGR01189 82 PGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKA 161 (198)
T ss_pred cccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 54 5455 66654321111 1256788889876 6778999999999999999999 9999999 788
Q ss_pred hHHHHHHHHHHHHHhcCceEEEEEE
Q 007511 413 HSIHIAGLMRMDVEESSVESIYVTV 437 (601)
Q Consensus 413 ~~~~l~~lir~~~~~~g~tii~~~~ 437 (601)
....+..+++....+ +.+++.++.
T Consensus 162 ~~~~l~~~l~~~~~~-~~tii~~sH 185 (198)
T TIGR01189 162 GVALLAGLLRAHLAR-GGIVLLTTH 185 (198)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEEc
Confidence 889999999887655 566665443
No 171
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=3.8e-18 Score=169.37 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=125.5
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc---------cccceeEeeec
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE---------EKNIVSHLTEA 350 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~---------~~~~i~~v~qs 350 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+.. .++.+++++|.
T Consensus 12 l~~~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~ 90 (214)
T PRK13543 12 LAAHALAFSRNEEPVFGPL-DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHL 90 (214)
T ss_pred EEEeeEEEecCCceeeecc-eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecC
Confidence 5567788888877899999 99999997655 9999999999999999999999996521 23458899887
Q ss_pred CC--CCCc-eeeeeeecccc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------cc
Q 007511 351 PV--PGTT-LGIVRVEGVLP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KA 411 (601)
Q Consensus 351 ~~--pgtT-~~~i~~~~~l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~ 411 (601)
+. ++.| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++| |+
T Consensus 91 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 170 (214)
T PRK13543 91 PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170 (214)
T ss_pred cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 64 5545 66654321111 1145778888876 6788899999999999999999 9999999 88
Q ss_pred chHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEee
Q 007511 412 GHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLH 446 (601)
Q Consensus 412 ~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~ 446 (601)
.....+..+++....+ +.+++. +..+|++++.+.
T Consensus 171 ~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 171 EGITLVNRMISAHLRG-GGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecChhhhhhhcceEEEEe
Confidence 8889999999887665 556653 345667766654
No 172
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.74 E-value=1.8e-18 Score=167.08 Aligned_cols=156 Identities=21% Similarity=0.318 Sum_probs=112.6
Q ss_pred EeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeee
Q 007511 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVE 363 (601)
Q Consensus 285 Sa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~ 363 (601)
++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+......+. . ..+......+.+
T Consensus 4 ~l~~~~~~~~~l~~~-~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~---~-~~~~~~~~~i~~- 77 (180)
T cd03214 4 NLSVGYGGRTVLDDL-SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA---S-LSPKELARKIAY- 77 (180)
T ss_pred EEEEEECCeeeEeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC---c-CCHHHHHHHHhH-
Confidence 445566666799999 99999997665 9999999999999999999999995421111000 0 000000000110
Q ss_pred ccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEE
Q 007511 364 GVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESI 433 (601)
Q Consensus 364 ~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii 433 (601)
...+++.+|+.. .++.+..||+||+||+++|+++ +|++++| |+.....+..+++....+.+.+++
T Consensus 78 -----~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tii 152 (180)
T cd03214 78 -----VPQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152 (180)
T ss_pred -----HHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 112677788876 5677899999999999999999 9999999 788889999999887665355666
Q ss_pred EEE-------EeecCEEEeecceec
Q 007511 434 YVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 434 ~~~-------~~ad~vl~l~~Gki~ 451 (601)
.++ .+||+++++++|++.
T Consensus 153 i~sh~~~~~~~~~d~~~~l~~g~i~ 177 (180)
T cd03214 153 MVLHDLNLAARYADRVILLKDGRIV 177 (180)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEE
Confidence 333 578999999999864
No 173
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.2e-18 Score=196.74 Aligned_cols=170 Identities=17% Similarity=0.229 Sum_probs=133.9
Q ss_pred EEEEEeEeecCC-----------ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------
Q 007511 281 LHFVSAVKNWGL-----------KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------- 338 (601)
Q Consensus 281 V~lvSa~kg~G~-----------~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------- 338 (601)
+.+.++.+.|+. ..+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+.
T Consensus 314 L~~~~l~~~y~~~~~~~~~~~~~~~~l~~v-s~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKV-SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred EEEeeeEEEEcCCCccccccCCceEEEeee-EeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 455677777752 3689999 99999997655 999999999999999999999998651
Q ss_pred -----ccccceeEeeecC---C-CCCc-eeeeeeecc---c-cc------hhhhhccCCCc-C-cCCccCCCCHHHHHHh
Q 007511 339 -----EEKNIVSHLTEAP---V-PGTT-LGIVRVEGV---L-PA------QAKLFDTPGLL-H-PNQITTRLTREEQKLV 396 (601)
Q Consensus 339 -----~~~~~i~~v~qs~---~-pgtT-~~~i~~~~~---l-~~------~~~llDtpGL~-~-~~~~~~~LSgGe~qrv 396 (601)
..++.++|++|.+ . |.+| .+++.+... . .. ..++++.+||. . .++++++|||||||||
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv 472 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI 472 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH
Confidence 1245699999986 2 6666 565543211 1 11 14688999995 3 6889999999999999
Q ss_pred cccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 397 NINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 397 ~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+||++| +|++++| |+..+..+..+++.+..+.+.+++++ ..+||++++|++|++.
T Consensus 473 ~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv 543 (623)
T PRK10261 473 CIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV 543 (623)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999 9999999 88999999999998876656777744 3589999999999984
No 174
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.74 E-value=3.4e-18 Score=175.90 Aligned_cols=169 Identities=20% Similarity=0.189 Sum_probs=129.6
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC--------CCCcc------------cc
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG--------RGGDG------------EE 340 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~--------~G~i~------------~~ 340 (601)
.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|+ .|.+. ..
T Consensus 3 ~~~nl~~~~~~~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 3 TADHLHVARRHRAILRDL-SLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred EEEEEEEEECCEeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 345666777777899999 99999998655 9999999999999999999987 77441 12
Q ss_pred ccceeEeeecCC--CCCc-eeeeeeecc-c-------c-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTT-LGIVRVEGV-L-------P-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT-~~~i~~~~~-l-------~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.+++++|.+. +..| .+++.+... . . ....+++.+|+.. .++.+..||+||+||+++|++|
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 161 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA 161 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 345789998753 4455 666644211 0 0 0145777888876 6788999999999999999998
Q ss_pred C----------CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 403 K----------PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 403 ~----------P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
. |++++| |+..+..+..+++....+.+.+++.++ .+||++++|++|++.
T Consensus 162 ~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~ 234 (272)
T PRK13547 162 QLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234 (272)
T ss_pred ccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 3 999998 889999999999987665456666333 479999999999874
No 175
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=4e-18 Score=167.90 Aligned_cols=152 Identities=17% Similarity=0.159 Sum_probs=118.3
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEeee
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLTE 349 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~q 349 (601)
.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++++++
T Consensus 3 ~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 3 EARNLACERDERILFSGL-SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred EEEEEEEEECCEEEEecc-eEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 345666777777899999 99999997665 999999999999999999999999541 12346788887
Q ss_pred cCC--CCCc-eeeeeeecccc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------c
Q 007511 350 APV--PGTT-LGIVRVEGVLP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------K 410 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D 410 (601)
.+. +..| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++| |
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 161 (204)
T PRK13538 82 QPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161 (204)
T ss_pred ccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 654 5556 66665432111 1246788899975 6778999999999999999999 9999999 8
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEE
Q 007511 411 AGHSIHIAGLMRMDVEESSVESIYV 435 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~~g~tii~~ 435 (601)
+.....+..+++....+ +.+++.+
T Consensus 162 ~~~~~~l~~~l~~~~~~-~~tiii~ 185 (204)
T PRK13538 162 KQGVARLEALLAQHAEQ-GGMVILT 185 (204)
T ss_pred HHHHHHHHHHHHHHHHC-CCEEEEE
Confidence 88899999999887654 5566533
No 176
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.2e-18 Score=191.75 Aligned_cols=165 Identities=17% Similarity=0.195 Sum_probs=129.8
Q ss_pred EeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-------------cccceeEeeec
Q 007511 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------------EKNIVSHLTEA 350 (601)
Q Consensus 285 Sa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------------~~~~i~~v~qs 350 (601)
++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+.. .++.+++++|.
T Consensus 3 nl~~~~~~~~il~~v-s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 81 (491)
T PRK10982 3 NISKSFPGVKALDNV-NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQE 81 (491)
T ss_pred ceEEEeCCEEeeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecc
Confidence 345567667799999 99999997655 9999999999999999999999996511 13568999998
Q ss_pred CC--CCCc-eeeeeeecc-c-----c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe---
Q 007511 351 PV--PGTT-LGIVRVEGV-L-----P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI--- 409 (601)
Q Consensus 351 ~~--pgtT-~~~i~~~~~-l-----~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL--- 409 (601)
+. +..| .+++.+... . . ...++++.+|+.. .++.+..|||||+|||++|++| +|++++|
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEP 161 (491)
T PRK10982 82 LNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161 (491)
T ss_pred cccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 64 5656 666654211 0 1 1145788889875 6788999999999999999999 9999999
Q ss_pred ----ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 ----KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ----D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+.....+..+++....+ |.+++.+ ..+||++++|++|++.
T Consensus 162 t~~LD~~~~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~~~d~i~~l~~G~i~ 213 (491)
T PRK10982 162 TSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWI 213 (491)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 888899999999987655 6676633 3579999999999873
No 177
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.74 E-value=7.5e-18 Score=171.61 Aligned_cols=171 Identities=18% Similarity=0.163 Sum_probs=128.8
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC----CCCCcc----------ccccce
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA----GRGGDG----------EEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~----~~G~i~----------~~~~~i 344 (601)
.+.+.++.+.| ...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+| ++|.+. ..++.+
T Consensus 4 ~l~~~~l~~~~-~~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGV-SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe-ccceecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 35566677777 35689999 89999997655 999999999999999999998 888541 113468
Q ss_pred eEeeecCC----CCCc-eeeeeeec---ccc----chhhhhccCCCcC----cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 345 SHLTEAPV----PGTT-LGIVRVEG---VLP----AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 345 ~~v~qs~~----pgtT-~~~i~~~~---~l~----~~~~llDtpGL~~----~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
+|++|.+. |..| .+++.... ... ...++++.+|+.. .++.+..||+||+||++||++| +|++
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 161 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF 161 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 99999862 3333 23221100 011 1256788888865 4678899999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
++| |+..+..+..+++....+.|.+++.++ .+||+++.+++|++..
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 162 IIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999 788889999999987665466776443 4789999999999843
No 178
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.7e-18 Score=174.67 Aligned_cols=170 Identities=19% Similarity=0.175 Sum_probs=129.3
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------c
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------E 339 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~ 339 (601)
.+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.. +++|.+. .
T Consensus 6 ~l~~~~l~~~~~~~~il~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYGDFQALHDI-SLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEECCeeeecce-eEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 36677888888877899999 99999997655 99999999999999999864 4677431 1
Q ss_pred cccceeEeeecCC--CCCceeeeeeecccc---c-------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc
Q 007511 340 EKNIVSHLTEAPV--PGTTLGIVRVEGVLP---A-------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT~~~i~~~~~l~---~-------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL 402 (601)
.++.++|++|.+. +.+..+++.+..... . ...+++..|+.. .++.+..||+||+||+++|++|
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 2456899999865 543367665421110 0 134677788742 4677899999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+..+..+..+++... + +.+++.+ ..+||++++|++|++..
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 165 AVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIE 228 (253)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 8888999999999874 3 4566633 35789999999999843
No 179
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.5e-18 Score=175.52 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=129.7
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc--------------c
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG--------------E 339 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~--------------~ 339 (601)
.+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.++ ++|.+. .
T Consensus 12 ~l~~~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNV-SMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eEEEeeeEEEeCCeeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 35567778888877899999 99999997655 999999999999999999875 678431 1
Q ss_pred cccceeEeeecCC--CCCc-eeeeeeeccc---cc------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc
Q 007511 340 EKNIVSHLTEAPV--PGTT-LGIVRVEGVL---PA------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT-~~~i~~~~~l---~~------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL 402 (601)
.++.++|++|.+. + .| .+++.+.... .. ..++++.+|+. . .++.+..||+||+||+++|++|
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 169 (258)
T PRK14268 91 LRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169 (258)
T ss_pred HhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence 2456899999865 5 45 7766542111 11 13577888873 2 5678899999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++... + +.+++. +..+||++++|++|++.
T Consensus 170 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 232 (258)
T PRK14268 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLMGELI 232 (258)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 8889999999999874 3 466663 33579999999999984
No 180
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=3e-18 Score=174.26 Aligned_cols=169 Identities=21% Similarity=0.252 Sum_probs=129.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC-----CCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~-----~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|. +|.+. ..
T Consensus 5 l~~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 5 IETVNLRVYYGSNHVIKGV-DLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred EEEEeEEEEeCCeeeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence 4566777888777899999 99999998765 9999999999999999999873 77431 12
Q ss_pred ccceeEeeecCC--CCCc-eeeeeeeccc-----cc------hhhhhccCCCc----C-cCCccCCCCHHHHHHhccccc
Q 007511 341 KNIVSHLTEAPV--PGTT-LGIVRVEGVL-----PA------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKE 401 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT-~~~i~~~~~l-----~~------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iara 401 (601)
++.+++++|.+. ++.| .+++.+.... .. ..++++..|+. . .++.+..||+||+||++||++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARA 163 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHH
Confidence 356899999865 6656 6666542111 11 14567778873 2 567889999999999999999
Q ss_pred c--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 402 L--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 402 L--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
| +|++++| |+.....+..+++.... +.+++.+ ..+||++++|++|++..
T Consensus 164 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 164 LAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 9 9999999 78889999999998753 4566633 45799999999999843
No 181
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.74 E-value=9.7e-18 Score=168.82 Aligned_cols=166 Identities=16% Similarity=0.145 Sum_probs=121.9
Q ss_pred EEEeEeecC--CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEe
Q 007511 283 FVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHL 347 (601)
Q Consensus 283 lvSa~kg~G--~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v 347 (601)
+.++.+.|+ ...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|++|.+. ..++.++++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (237)
T cd03252 3 FEHVRFRYKPDGPVILDNI-SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVV 81 (237)
T ss_pred EEEEEEecCCCCccceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEE
Confidence 445566665 35689999 89999997655 999999999999999999999999541 124568999
Q ss_pred eecCC--CCCceeeeeeeccccch------------hhhhccC--CCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 348 TEAPV--PGTTLGIVRVEGVLPAQ------------AKLFDTP--GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 348 ~qs~~--pgtT~~~i~~~~~l~~~------------~~llDtp--GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
+|.+. +.+..+++.+....... ..+++.+ |+.. .++.+..||+||+|||++|++| +|++++
T Consensus 82 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 82 LQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred cCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 99875 43336666542111111 1223333 3333 3567899999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
| |+..+..+..+++... + +.+++.++ ..||+++.+++|++.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~d~v~~l~~G~i~ 215 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVKNADRIIVMEKGRIV 215 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 9 8889999999998875 4 56666322 358999999999984
No 182
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.74 E-value=4.7e-18 Score=173.72 Aligned_cols=161 Identities=19% Similarity=0.232 Sum_probs=126.4
Q ss_pred CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCc----------------cccccceeEee
Q 007511 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGD----------------GEEKNIVSHLT 348 (601)
Q Consensus 291 G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i----------------~~~~~~i~~v~ 348 (601)
|...++++| ++.+.+|+++. ||.|||||||+.++|+|+++. .+|++ ..+.+.|+++|
T Consensus 16 g~v~av~~v-s~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIf 94 (316)
T COG0444 16 GVVKAVDGV-SFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94 (316)
T ss_pred ccEEEEece-eEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEE
Confidence 445789999 99999998655 999999999999999999973 23322 11345799999
Q ss_pred ecCC----CCCceee-eeeecc----c-c------chhhhhccCCCcC----cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 349 EAPV----PGTTLGI-VRVEGV----L-P------AQAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 349 qs~~----pgtT~~~-i~~~~~----l-~------~~~~llDtpGL~~----~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
|++. |-+|.+. +..... . . ...++++.+||.+ .+.++++|||||+|||+||.|| +|++
T Consensus 95 Q~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L 174 (316)
T COG0444 95 QDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL 174 (316)
T ss_pred cCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE
Confidence 9986 6666322 211111 1 1 1257899999986 4889999999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
++. |...+..+..+++.+..+.|.++++++ .+||++++|..|++.+
T Consensus 175 lIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE 234 (316)
T COG0444 175 LIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVE 234 (316)
T ss_pred EEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEE
Confidence 998 777888999999999887788888544 6999999999999844
No 183
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.74 E-value=1.8e-18 Score=170.35 Aligned_cols=149 Identities=22% Similarity=0.241 Sum_probs=115.7
Q ss_pred EeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------ccccceeEe
Q 007511 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------------EEKNIVSHL 347 (601)
Q Consensus 285 Sa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------------~~~~~i~~v 347 (601)
++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|+.|.+. ..++.++++
T Consensus 3 ~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 81 (206)
T TIGR03608 3 NISKKFGDKIILDDL-NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYL 81 (206)
T ss_pred ceEEEECCEEEEece-EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEE
Confidence 445566666799999 99999997655 999999999999999999999999541 123568999
Q ss_pred eecCC--CCCc-eeeeeeeccc---c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe---
Q 007511 348 TEAPV--PGTT-LGIVRVEGVL---P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI--- 409 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l---~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL--- 409 (601)
+|.+. ++.| .+++.+.... . ...++++..|+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 ~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEP 161 (206)
T TIGR03608 82 FQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEP 161 (206)
T ss_pred ecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 98865 5556 6666542111 0 1146788889865 6788899999999999999999 9999999
Q ss_pred ----ccchHHHHHHHHHHHHHhcCceEEEE
Q 007511 410 ----KAGHSIHIAGLMRMDVEESSVESIYV 435 (601)
Q Consensus 410 ----D~~~~~~l~~lir~~~~~~g~tii~~ 435 (601)
|+.....+..+++....+ +.+++.+
T Consensus 162 t~~LD~~~~~~l~~~l~~~~~~-~~tii~~ 190 (206)
T TIGR03608 162 TGSLDPKNRDEVLDLLLELNDE-GKTIIIV 190 (206)
T ss_pred cCCCCHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 888899999999887654 5666543
No 184
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.74 E-value=6.1e-18 Score=192.99 Aligned_cols=171 Identities=16% Similarity=0.221 Sum_probs=132.1
Q ss_pred ceEEEEEeEeecCCc--cccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccc
Q 007511 279 TKLHFVSAVKNWGLK--SLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNI 343 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~--~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~ 343 (601)
.+|.+.++..+|+.+ .+++++ ++.+++|+ |++||+||||||||++.|+|++.|..|.+ ...|+.
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~i-sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDL-SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhce-eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 358888888888776 699999 99999986 66699999999999999999999999965 456889
Q ss_pred eeEeeecCC--CCCceeeeeeeccccchhhh---hccCCC-----------cC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 344 VSHLTEAPV--PGTTLGIVRVEGVLPAQAKL---FDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 344 i~~v~qs~~--pgtT~~~i~~~~~l~~~~~l---lDtpGL-----------~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+++++|++. .|+..||+.+........++ +...|+ .. ....-..||||||||++|||+| +|
T Consensus 549 ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P 628 (709)
T COG2274 549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP 628 (709)
T ss_pred eeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC
Confidence 999999997 67778888775333222222 222222 11 2334567999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEE------EEEeecCEEEeecceecc
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIY------VTVWASPYLPLHMGKTEN 452 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~------~~~~ad~vl~l~~Gki~~ 452 (601)
++++| |+.....+.+.+..... +.|++. ....||++++|+.|++.+
T Consensus 629 ~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~ 687 (709)
T COG2274 629 KILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687 (709)
T ss_pred CEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHhhhccEEEEccCCceec
Confidence 99999 77777788877776653 456663 346899999999999844
No 185
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.74 E-value=3.2e-18 Score=182.18 Aligned_cols=169 Identities=23% Similarity=0.236 Sum_probs=143.7
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------------ccccccee
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-------------GEEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-------------~~~~~~i~ 345 (601)
.+.+.+.+|.|+.-...++| ++.+.+|+|.. +|.||||||||+++|.|+++|++|++ ...+..||
T Consensus 4 ~l~~~~itK~f~~~~And~V-~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDV-SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred eEEEeccEEEcCCEEecCce-eeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 36788999999988899999 99999999866 99999999999999999999999966 23456799
Q ss_pred EeeecCC--CCCc-eeeeeeecccc-----c-------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEE
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVLP-----A-------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l~-----~-------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ll 407 (601)
+|.|... |.+| .+|+.+...-. + ..++.+..||.- ++.++..||-|+||||.|-|+| +++++
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iL 162 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLL 162 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEE
Confidence 9999987 8888 88887653211 0 157889999975 8999999999999999999999 99999
Q ss_pred Eec-------cchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeeccee
Q 007511 408 RIK-------AGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKT 450 (601)
Q Consensus 408 lLD-------~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki 450 (601)
+|| |.....+...++.+..+ |.++++++ .+|||+.+|..|+.
T Consensus 163 ILDEPTaVLTP~E~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkv 218 (501)
T COG3845 163 ILDEPTAVLTPQEADELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRRGKV 218 (501)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhhCeeEEEeCCeE
Confidence 994 67788899999988877 77888544 68999999999975
No 186
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=4.2e-18 Score=163.45 Aligned_cols=139 Identities=21% Similarity=0.306 Sum_probs=106.1
Q ss_pred EEeEeecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEeeecC
Q 007511 284 VSAVKNWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLTEAP 351 (601)
Q Consensus 284 vSa~kg~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~qs~ 351 (601)
.++.+.|+...+++++ ++.+.+|+++ ++|+||+|||||+++|+|+.+|..|.+. ..++.+++++|.+
T Consensus 4 ~~l~~~~~~~~~l~~~-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 82 (173)
T cd03230 4 RNLSKRYGKKTALDDI-SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEP 82 (173)
T ss_pred EEEEEEECCeeeeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCC
Confidence 4455566656789999 9999999765 4999999999999999999999998541 1234566776664
Q ss_pred C--CCCc-eeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHH
Q 007511 352 V--PGTT-LGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAG 419 (601)
Q Consensus 352 ~--pgtT-~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~ 419 (601)
. ++.| .+++. ||+||+||+++|++| +|++++| |+..+..+..
T Consensus 83 ~~~~~~tv~~~~~--------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 136 (173)
T cd03230 83 SLYENLTVRENLK--------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136 (173)
T ss_pred ccccCCcHHHHhh--------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 3 3222 22210 999999999999999 9999999 8889999999
Q ss_pred HHHHHHHhcCceEEEE-------EEeecCEEEeeccee
Q 007511 420 LMRMDVEESSVESIYV-------TVWASPYLPLHMGKT 450 (601)
Q Consensus 420 lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki 450 (601)
+++....+ |.+++.+ ..+||+++.+++|++
T Consensus 137 ~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 137 LLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99988766 6666633 347899999998863
No 187
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.73 E-value=3.9e-18 Score=190.19 Aligned_cols=167 Identities=19% Similarity=0.210 Sum_probs=130.7
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC--CCCCccc-------------ccccee
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA--GRGGDGE-------------EKNIVS 345 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~--~~G~i~~-------------~~~~i~ 345 (601)
.+.+..+.|+...+++++ ++.+..|++++ +|+||||||||+++|+|+.+| ++|.+.. .++.++
T Consensus 3 ~i~~l~~~~~~~~il~~i-sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (500)
T TIGR02633 3 EMKGIVKTFGGVKALDGI-DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIV 81 (500)
T ss_pred EEEeEEEEeCCeEeecce-EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEE
Confidence 455677778777899999 99999997654 999999999999999999986 6785411 234689
Q ss_pred EeeecCC--CCCc-eeeeeeeccc-------cc------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVL-------PA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l-------~~------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
|++|.+. +.+| .+++.+.... .. ..++++.+|+.. .++.+.+|||||+|||++|++| +|+
T Consensus 82 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~ 161 (500)
T TIGR02633 82 IIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQAR 161 (500)
T ss_pred EEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 9999865 5556 6665432111 00 146788899975 2567899999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
+++| |+..+..+..+++....+ |.+++. +..+||++++|++|++
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~~~~~~~d~i~~l~~G~i 219 (500)
T TIGR02633 162 LLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQH 219 (500)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHHhCCEEEEEeCCeE
Confidence 9999 899999999999988655 667663 3357999999999987
No 188
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.73 E-value=3.9e-18 Score=173.48 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=128.5
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcccc-ccceeEeeecCC--CCC-
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPV--PGT- 355 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~-~~~i~~v~qs~~--pgt- 355 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|++|.+... +..++|++|.+. +..
T Consensus 5 l~~~~l~~~~~~~~vl~~v-s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~ 83 (251)
T PRK09544 5 VSLENVSVSFGQRRVLSDV-SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLP 83 (251)
T ss_pred EEEeceEEEECCceEEEeE-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccC
Confidence 4566777788777899999 89999997555 99999999999999999999999976432 346899999864 321
Q ss_pred -c-eeeeeeeccc--cchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHH
Q 007511 356 -T-LGIVRVEGVL--PAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLM 421 (601)
Q Consensus 356 -T-~~~i~~~~~l--~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~li 421 (601)
| .+++.+.... ....++++.+|+.. .++.+..||+||+||+++|++| +|++++| |+..+..+..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 163 (251)
T PRK09544 84 LTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI 163 (251)
T ss_pred hhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 3 3333221111 11256788889876 6778999999999999999999 9999999 788899999999
Q ss_pred HHHHHhcCceEEEE-------EEeecCEEEeeccee
Q 007511 422 RMDVEESSVESIYV-------TVWASPYLPLHMGKT 450 (601)
Q Consensus 422 r~~~~~~g~tii~~-------~~~ad~vl~l~~Gki 450 (601)
+....+.+.+++.+ ..+||++++|+. ++
T Consensus 164 ~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i 198 (251)
T PRK09544 164 DQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HI 198 (251)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ce
Confidence 88766546676643 357899999975 44
No 189
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.73 E-value=4.3e-18 Score=173.18 Aligned_cols=170 Identities=19% Similarity=0.237 Sum_probs=129.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc--------------------
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------------------- 339 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------------------- 339 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|.+|.+..
T Consensus 4 l~~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 4 LQVSGLSKSYGGGKGCRDV-SFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred EEEeeeEEEeCCceEeecc-eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 4567777888777789999 99999997655 9999999999999999999999985411
Q ss_pred -cccceeEeeecCC----CCCc-eeeeee-----ecc-----ccchhhhhccCCCcC--cCCccCCCCHHHHHHhccccc
Q 007511 340 -EKNIVSHLTEAPV----PGTT-LGIVRV-----EGV-----LPAQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKE 401 (601)
Q Consensus 340 -~~~~i~~v~qs~~----pgtT-~~~i~~-----~~~-----l~~~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iara 401 (601)
.++.+++++|.+. +..| .+++.. ... .....++++.+|+.. .++.+..||+||+||++||++
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara 162 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN 162 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence 0235899999863 2223 333311 000 011256788899852 677899999999999999999
Q ss_pred c--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 402 L--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 402 L--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
| +|++++| |+..+..+..+++....+.+.+++.++ .+||++++|++|++.
T Consensus 163 l~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~ 228 (253)
T TIGR02323 163 LVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228 (253)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9 9999999 888899999999887655466766433 478999999999984
No 190
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=4.3e-18 Score=167.54 Aligned_cols=156 Identities=18% Similarity=0.187 Sum_probs=117.7
Q ss_pred EEEEeEeecC----CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc---CCCCCcc-----------cccc
Q 007511 282 HFVSAVKNWG----LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD---AGRGGDG-----------EEKN 342 (601)
Q Consensus 282 ~lvSa~kg~G----~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~---~~~G~i~-----------~~~~ 342 (601)
.+.++.+.|. ...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+ |++|.+. ..++
T Consensus 5 ~~~~~~~~~~~~~~~~~il~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 83 (202)
T cd03233 5 SWRNISFTTGKGRSKIPILKDF-SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPG 83 (202)
T ss_pred EEEccEEEeccCCCCceeeeeE-EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcc
Confidence 3445555553 45789999 99999997665 99999999999999999998 7888541 2345
Q ss_pred ceeEeeecCC--CCCc-eeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------c
Q 007511 343 IVSHLTEAPV--PGTT-LGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------K 410 (601)
Q Consensus 343 ~i~~v~qs~~--pgtT-~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D 410 (601)
.+++++|.+. ++.| .+++.+... +. .++.+..||+||+||+++|++| +|++++| |
T Consensus 84 ~i~~~~q~~~~~~~~tv~~~l~~~~~-------~~------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD 150 (202)
T cd03233 84 EIIYVSEEDVHFPTLTVRETLDFALR-------CK------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150 (202)
T ss_pred eEEEEecccccCCCCcHHHHHhhhhh-------hc------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCC
Confidence 6889988754 5555 565543211 00 4567889999999999999999 9999999 8
Q ss_pred cchHHHHHHHHHHHHHhcCceEEE--------EEEeecCEEEeecceec
Q 007511 411 AGHSIHIAGLMRMDVEESSVESIY--------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~~g~tii~--------~~~~ad~vl~l~~Gki~ 451 (601)
+..+..+..+++....+.+.+++. +..+||++++|++|++.
T Consensus 151 ~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 151 SSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 888999999999887653444332 22478999999999874
No 191
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=2.3e-17 Score=175.04 Aligned_cols=183 Identities=26% Similarity=0.294 Sum_probs=137.4
Q ss_pred cccccccCcccccccccCC-------C--CchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhh
Q 007511 159 CHALRHYGKVKDVTVENLL-------P--DFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENE 229 (601)
Q Consensus 159 C~~l~hy~~~~~~~~~~~l-------P--~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~ 229 (601)
-++.++|+...+...++.+ + .+.|.+.|..+...++.++|+|++|||+....+..+..+.++|..
T Consensus 37 vTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~------ 110 (444)
T COG1160 37 VTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR------ 110 (444)
T ss_pred CccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh------
Confidence 4566777766554433211 2 235888888888899999999999999999999999999998873
Q ss_pred hhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhc-c----
Q 007511 230 RAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA-G---- 304 (601)
Q Consensus 230 ~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~-~---- 304 (601)
..+|+++|+||+|-...+ .... +++ .+| +.+++.+|+.++.|...|++.+.... .
T Consensus 111 ---------~~kpviLvvNK~D~~~~e---~~~~----efy-slG---~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~ 170 (444)
T COG1160 111 ---------SKKPVILVVNKIDNLKAE---ELAY----EFY-SLG---FGEPVPISAEHGRGIGDLLDAVLELLPPDEEE 170 (444)
T ss_pred ---------cCCCEEEEEEcccCchhh---hhHH----HHH-hcC---CCCceEeehhhccCHHHHHHHHHhhcCCcccc
Confidence 113899999999987321 1111 222 334 67899999999999999888876553 1
Q ss_pred -c-----CCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccch-hhhhccCC
Q 007511 305 -K-----RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQ-AKLFDTPG 377 (601)
Q Consensus 305 -~-----~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~-~~llDtpG 377 (601)
. ..++++||.+|+|||||+|+|+|.. .+-.++.||||++.+.......+. ..++||.|
T Consensus 171 ~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgee---------------R~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAG 235 (444)
T COG1160 171 EEEEETDPIKIAIIGRPNVGKSSLINAILGEE---------------RVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAG 235 (444)
T ss_pred cccccCCceEEEEEeCCCCCchHHHHHhccCc---------------eEEecCCCCccccceeeeEEECCeEEEEEECCC
Confidence 1 2468889999999999999999865 455678899999999887654443 58999999
Q ss_pred CcCcC
Q 007511 378 LLHPN 382 (601)
Q Consensus 378 L~~~~ 382 (601)
+....
T Consensus 236 iRrk~ 240 (444)
T COG1160 236 IRRKG 240 (444)
T ss_pred CCccc
Confidence 98743
No 192
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=6.4e-18 Score=169.75 Aligned_cols=166 Identities=15% Similarity=0.179 Sum_probs=122.6
Q ss_pred EEEeEeecCCc--cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEe
Q 007511 283 FVSAVKNWGLK--SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHL 347 (601)
Q Consensus 283 lvSa~kg~G~~--~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v 347 (601)
+.++.+.|+.. .+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.++++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (234)
T cd03251 3 FKNVTFRYPGDGPPVLRDI-SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLV 81 (234)
T ss_pred EEEEEEEeCCCCccceeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEe
Confidence 45666677654 689999 99999997665 999999999999999999999999541 124568999
Q ss_pred eecCC--CCCceeeeeeeccccch------------hhhhccC--CCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 348 TEAPV--PGTTLGIVRVEGVLPAQ------------AKLFDTP--GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 348 ~qs~~--pgtT~~~i~~~~~l~~~------------~~llDtp--GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
+|.+. +.+..+++.+....... .++++.+ |+.. .++.+..||+||+||+++|++| +|++++
T Consensus 82 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 161 (234)
T cd03251 82 SQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILI 161 (234)
T ss_pred CCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 98865 44337776543211110 1223332 4443 4566889999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
| |+.....+..+++... + +.+++.++ ..||++++|++|++.
T Consensus 162 LDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~v~~l~~G~i~ 215 (234)
T cd03251 162 LDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIENADRIVVLEDGKIV 215 (234)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEEEecCCeEe
Confidence 9 8888999999998775 3 55666322 249999999999984
No 193
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4e-18 Score=174.21 Aligned_cols=170 Identities=17% Similarity=0.174 Sum_probs=130.5
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------c
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------E 339 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~ 339 (601)
.+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.. |++|.+. .
T Consensus 13 ~l~~~~l~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~ 91 (260)
T PRK10744 13 KIQVRNLNFYYGKFHALKNI-NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIAL 91 (260)
T ss_pred eEEEEEEEEEeCCeEEeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHH
Confidence 46677888888877899999 99999998665 99999999999999999986 4678431 1
Q ss_pred cccceeEeeecCC--CCCceeeeeeecc----cc------chhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc
Q 007511 340 EKNIVSHLTEAPV--PGTTLGIVRVEGV----LP------AQAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT~~~i~~~~~----l~------~~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL 402 (601)
.++.+++++|.+. +.+..+++.+... .. ...++++.+|+. . .++.+..||+||+||++||++|
T Consensus 92 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 171 (260)
T PRK10744 92 LRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171 (260)
T ss_pred HhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 2456999999865 5333776654211 11 114577888873 2 5677899999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++... + +.+++.++ .+||+++++++|++..
T Consensus 172 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 172 AIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred HCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 7888899999998874 3 45666433 5789999999999843
No 194
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.5e-18 Score=172.37 Aligned_cols=169 Identities=20% Similarity=0.183 Sum_probs=129.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc---CCCCCcc------------ccccce
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD---AGRGGDG------------EEKNIV 344 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~---~~~G~i~------------~~~~~i 344 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.. |..|.+. ..++.+
T Consensus 3 ~~~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDI-NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred eeeeeeEEEECCEeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 3456677788777899999 99999997665 99999999999999999974 5788541 234568
Q ss_pred eEeeecCC--CCCceeeeeeeccc-----c-c-----hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc--CC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVL-----P-A-----QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l-----~-~-----~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+|++|.+. +.+..+++.+.... . . ...+++.+|+.. .++.+..||+||+||+++|++| +|
T Consensus 82 ~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 161 (246)
T PRK14269 82 GMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKP 161 (246)
T ss_pred EEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999865 54337776542111 0 1 145788888842 4667889999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceecc
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTEN 452 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~~ 452 (601)
++++| |+.....+..+++... + +.+++. +..+||++++|++|++..
T Consensus 162 ~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 221 (246)
T PRK14269 162 KLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHLGELIE 221 (246)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence 99999 7888888888888764 3 556663 345899999999999853
No 195
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.4e-17 Score=166.71 Aligned_cols=169 Identities=18% Similarity=0.268 Sum_probs=124.9
Q ss_pred eEEEEEeEeecCC-ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc------------cccccee
Q 007511 280 KLHFVSAVKNWGL-KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G~-~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~ 345 (601)
.+.+.++.+.|+. ..+++++ ++.+.+|+++ ++|+||+|||||+++|+|+.+|.+|.+. ..++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDI-NFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCCCccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 3566777888864 4699999 9999999765 4999999999999999999999999651 1245689
Q ss_pred EeeecCC--CCCceeeeeeeccccc---hhhhhccC-----------CCcC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 346 HLTEAPV--PGTTLGIVRVEGVLPA---QAKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 346 ~v~qs~~--pgtT~~~i~~~~~l~~---~~~llDtp-----------GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
|++|.+. +++..+++.+...... ....++.. |+.. .++.+..||+||+||++||++| +|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999875 4433666654321111 11222222 3332 3455789999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++| |+..+..+..+++... + +.+++.++ ..||+++.|++|++.
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~ 216 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIKNADKILVLDDGKII 216 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhhCCEEEEEeCCeEE
Confidence 999 8888999999998774 4 56666332 358999999999974
No 196
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.73 E-value=4.9e-18 Score=184.05 Aligned_cols=168 Identities=21% Similarity=0.290 Sum_probs=139.4
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------ccccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~~~~i~~ 346 (601)
+.+.+..|.||.-.+|+++ ++.+.+|+|.. +|.||||||||+|+|+|.++|++|.+. .....|..
T Consensus 9 l~~~~i~K~FggV~AL~~v-~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 9 LELRGISKSFGGVKALDGV-SLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eeeecceEEcCCceeeccc-eeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 4478899999999999999 99999999866 999999999999999999999999651 23456888
Q ss_pred eeecCC--CCCc-eeeeeeeccccc-------------hhhhhccCCCc-CcCCccCCCCHHHHHHhcccccc--CCCEE
Q 007511 347 LTEAPV--PGTT-LGIVRVEGVLPA-------------QAKLFDTPGLL-HPNQITTRLTREEQKLVNINKEL--KPRTY 407 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~l~~-------------~~~llDtpGL~-~~~~~~~~LSgGe~qrv~iaraL--~P~ll 407 (601)
+.|... |.+| .+|+.+...... ..++++..|+. .++..+..||.||||.|.||||+ +++++
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999876 9988 777754321111 15788888884 48889999999999999999999 99999
Q ss_pred Ee-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeeccee
Q 007511 408 RI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKT 450 (601)
Q Consensus 408 lL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki 450 (601)
+| ....+..+..+++.+..+ |.++++++ .+|||+.+|.+|+.
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~DritVlRDG~~ 223 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVLRDGRV 223 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHhcCEEEEEeCCEE
Confidence 99 456678888999998876 88888544 58999999999985
No 197
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.73 E-value=2.9e-18 Score=172.14 Aligned_cols=155 Identities=21% Similarity=0.203 Sum_probs=118.8
Q ss_pred chhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-------cccceeEeeecCC--CCCc-eeeeeeec-
Q 007511 297 DDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------EKNIVSHLTEAPV--PGTT-LGIVRVEG- 364 (601)
Q Consensus 297 ~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------~~~~i~~v~qs~~--pgtT-~~~i~~~~- 364 (601)
+++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+.. .....++++|.+. +.+| .+++.+..
T Consensus 2 ~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 2 KGV-NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred Cce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 345 67778887655 9999999999999999999999996521 1122478888765 5555 66654421
Q ss_pred ----cccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHH
Q 007511 365 ----VLPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMD 424 (601)
Q Consensus 365 ----~l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~ 424 (601)
.... ..++++.+|+.. .++.+..|||||+||+++|++| +|++++| |+.....+..+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 160 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 1111 145788889876 6778999999999999999999 9999999 888999999999987
Q ss_pred HHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 425 VEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 425 ~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
..+.+.+++.+ ..+||++++|++|++..
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 66546666633 35799999999998853
No 198
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.4e-18 Score=173.25 Aligned_cols=168 Identities=16% Similarity=0.124 Sum_probs=128.1
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC-----CCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~-----~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.++. +|.+. ..
T Consensus 8 l~~~~l~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (254)
T PRK14273 8 IETENLNLFYTDFKALNNI-NIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86 (254)
T ss_pred EEEeeeEEEeCCceeecce-eeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence 5567777888777899999 99999997665 9999999999999999999874 67431 12
Q ss_pred ccceeEeeecCC-CCCc-eeeeeeeccc----cc------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV-PGTT-LGIVRVEGVL----PA------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~-pgtT-~~~i~~~~~l----~~------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.++|++|.+. ...| .+++.+.... .. ..++++..|+. . .++.+..|||||+||++||++|
T Consensus 87 ~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~ 166 (254)
T PRK14273 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLA 166 (254)
T ss_pred hhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 456899999865 2244 6766542111 10 13456667762 2 5777899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++... + +.+++.+ ..+||++++|++|++.
T Consensus 167 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~ 228 (254)
T PRK14273 167 IEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIE 228 (254)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 8889999999999874 3 4566633 3578999999999984
No 199
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.73 E-value=4.3e-18 Score=174.71 Aligned_cols=170 Identities=20% Similarity=0.217 Sum_probs=131.0
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc--------------c
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG--------------E 339 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~--------------~ 339 (601)
.+.+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+| ++|.+. .
T Consensus 19 ~l~~~nl~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~ 97 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDV-DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVE 97 (267)
T ss_pred eEEEEeEEEEECCEEEEEEE-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHH
Confidence 46677888888877899999 99999997655 999999999999999999874 778431 1
Q ss_pred cccceeEeeecCC--CCCceeeeeeeccc-----c--c----hhhhhccCCCcC-----cCCccCCCCHHHHHHhccccc
Q 007511 340 EKNIVSHLTEAPV--PGTTLGIVRVEGVL-----P--A----QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKE 401 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT~~~i~~~~~l-----~--~----~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iara 401 (601)
.++.+++++|.+. +.+..+++.+.... . . ..++++.+|+.. .++.+..||+||+||++||++
T Consensus 98 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 177 (267)
T PRK14235 98 LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA 177 (267)
T ss_pred HhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 2456899999865 54336766542111 0 0 145788888842 466789999999999999999
Q ss_pred c--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 402 L--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 402 L--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
| +|++++| |+.....+..+++.... +.+++.+ ..+||++++|++|++..
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 178 IAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 9 9999999 88889999999988753 4566633 35789999999999843
No 200
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.73 E-value=1.6e-18 Score=173.40 Aligned_cols=166 Identities=20% Similarity=0.164 Sum_probs=122.6
Q ss_pred EEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeee--cCCCCCc-eee
Q 007511 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE--APVPGTT-LGI 359 (601)
Q Consensus 284 vSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~q--s~~pgtT-~~~ 359 (601)
.+...+|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+......+..... ...|..| .++
T Consensus 26 ~~~~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~en 104 (224)
T cd03220 26 LGRKGEVGEFWALKDV-SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGREN 104 (224)
T ss_pred hhhhhhcCCeEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHH
Confidence 3445688888899999 99999997665 99999999999999999999999966322221111111 1124555 555
Q ss_pred eeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHH
Q 007511 360 VRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGL 420 (601)
Q Consensus 360 i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~l 420 (601)
+.+... ... ..++++.+|+.. .++.+..||+||+||+++|+++ +|++++| |+..+..+..+
T Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~ 184 (224)
T cd03220 105 IYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRR 184 (224)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 543211 111 145677888876 6778899999999999999999 9999999 78888899999
Q ss_pred HHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 421 MRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 421 ir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
++....+ +.+++.+ ..+||+++++++|++.
T Consensus 185 l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 221 (224)
T cd03220 185 LRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIR 221 (224)
T ss_pred HHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9887665 6666633 3578999999999874
No 201
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=8.5e-18 Score=162.07 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=105.8
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------ccccceeEe
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIVSHL 347 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i~~v 347 (601)
+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.++++|.+. ..++.++++
T Consensus 3 ~~~l~~~~~~~~~l~~i-~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (178)
T cd03229 3 LKNVSKRYGQKTVLNDV-SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMV 81 (178)
T ss_pred EEEEEEEECCeEEEeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEE
Confidence 34556667667799999 99999998665 999999999999999999999998542 112345666
Q ss_pred eecCC--CCCc-eeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHH
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSI 415 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~ 415 (601)
+|.+. ++.| .+++.+ .||+||+||+++|++| +|++++| |+..+.
T Consensus 82 ~q~~~~~~~~t~~~~l~~------------------------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~ 137 (178)
T cd03229 82 FQDFALFPHLTVLENIAL------------------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR 137 (178)
T ss_pred ecCCccCCCCCHHHheee------------------------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHH
Confidence 55532 2222 222211 0999999999999999 9999999 889999
Q ss_pred HHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecce
Q 007511 416 HIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGK 449 (601)
Q Consensus 416 ~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gk 449 (601)
.+..+++....+.+.+++.++ .+||+++.|.+|+
T Consensus 138 ~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 138 EVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999987765355665332 3688888887763
No 202
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=5.4e-18 Score=174.04 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=128.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.. |+.|.+. ..
T Consensus 22 l~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (268)
T PRK14248 22 LEVKDLSIYYGEKRAVNDI-SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNL 100 (268)
T ss_pred EEEEEEEEEeCCceeeece-EEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHH
Confidence 5677888888878899999 99999998655 99999999999999999864 5778441 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeeccc----cc------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVL----PA------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l----~~------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.++|++|.+. +++..+++.+.... .. ...+++..|+. . .++.+..||+||+||++||++|
T Consensus 101 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~ 180 (268)
T PRK14248 101 RREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLA 180 (268)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 456899999875 55436665532111 00 13456777763 2 5677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+..+..+..+++.... +.+++. +..+||++++|++|++..
T Consensus 181 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 181 MKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 88889999999998753 356653 335789999999999743
No 203
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.73 E-value=3.5e-18 Score=191.42 Aligned_cols=170 Identities=21% Similarity=0.245 Sum_probs=132.2
Q ss_pred EEEEEeEeecC-----CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc---------------
Q 007511 281 LHFVSAVKNWG-----LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE--------------- 339 (601)
Q Consensus 281 V~lvSa~kg~G-----~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~--------------- 339 (601)
+.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+..
T Consensus 280 l~~~~l~~~~~~~~~~~~~il~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 280 IKVRNVSKRYISVDRGVVKAVDNV-SLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred EEEeccEEEeccCCCCCceEEeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 55667777774 24689999 99999997655 9999999999999999999999886532
Q ss_pred ----cccceeEeeecCC--CCCc-eeeeeeecc--ccc------hhhhhccCCCcC------cCCccCCCCHHHHHHhcc
Q 007511 340 ----EKNIVSHLTEAPV--PGTT-LGIVRVEGV--LPA------QAKLFDTPGLLH------PNQITTRLTREEQKLVNI 398 (601)
Q Consensus 340 ----~~~~i~~v~qs~~--pgtT-~~~i~~~~~--l~~------~~~llDtpGL~~------~~~~~~~LSgGe~qrv~i 398 (601)
.++.++|++|.+. +..| .+++.+... ... ..++++.+|+.. .++.+.+|||||||||+|
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l 438 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVAL 438 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence 1245899999864 5556 666643211 111 135788899963 478899999999999999
Q ss_pred cccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 399 NKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 399 araL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
|++| +|++++| |+..+..+..+++....+.+.+++. +..+||++++|++|++.
T Consensus 439 aral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 507 (520)
T TIGR03269 439 AQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507 (520)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999 9999999 8899999999999887654667763 33589999999999873
No 204
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.73 E-value=1.9e-17 Score=158.98 Aligned_cols=139 Identities=18% Similarity=0.222 Sum_probs=104.3
Q ss_pred EEEeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEe
Q 007511 283 FVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHL 347 (601)
Q Consensus 283 lvSa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v 347 (601)
+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+. ..++.++++
T Consensus 3 ~~~l~~~~~~~~~~~l~~~-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (173)
T cd03246 3 VENVSFRYPGAEPPVLRNV-SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYL 81 (173)
T ss_pred EEEEEEEcCCCCCcceeee-EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEE
Confidence 4456666654 4589999 89999997655 999999999999999999999999542 113345666
Q ss_pred eecCC--CCCceeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHH
Q 007511 348 TEAPV--PGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIH 416 (601)
Q Consensus 348 ~qs~~--pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~ 416 (601)
+|.+. +.+..+++ ||+||+||+++|+++ +|++++| |+..+..
T Consensus 82 ~q~~~~~~~tv~~~l---------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~ 134 (173)
T cd03246 82 PQDDELFSGSIAENI---------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERA 134 (173)
T ss_pred CCCCccccCcHHHHC---------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHH
Confidence 55432 11001111 999999999999999 9999999 8888999
Q ss_pred HHHHHHHHHHhcCceEEEEE------EeecCEEEeeccee
Q 007511 417 IAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKT 450 (601)
Q Consensus 417 l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki 450 (601)
+..+++....+ +.+++.++ .+||++++|++|++
T Consensus 135 l~~~l~~~~~~-~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 135 LNQAIAALKAA-GATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHhC-CCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999887654 66666332 46899999988863
No 205
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.72 E-value=1.3e-17 Score=163.71 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=118.1
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEeee
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLTE 349 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~q 349 (601)
.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.+++++|
T Consensus 3 ~~~~l~~~~~~~~il~~~-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 3 DVIELDFDYHDQPLLQQI-SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEEEEEEeCCeeEEeee-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 456777778777899999 99999997665 999999999999999999999999541 12456889988
Q ss_pred cCC--CCCc-eeeeeeecccc----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccc
Q 007511 350 APV--PGTT-LGIVRVEGVLP----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAG 412 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l~----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~ 412 (601)
.+. |+.| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++| |+.
T Consensus 82 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~ 161 (200)
T PRK13540 82 RSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL 161 (200)
T ss_pred ccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHH
Confidence 754 5666 66665421111 1356788888865 5677889999999999999999 9999999 888
Q ss_pred hHHHHHHHHHHHHHhcCceEEEE
Q 007511 413 HSIHIAGLMRMDVEESSVESIYV 435 (601)
Q Consensus 413 ~~~~l~~lir~~~~~~g~tii~~ 435 (601)
....+..+++....+ +.+++.+
T Consensus 162 ~~~~l~~~l~~~~~~-~~tiii~ 183 (200)
T PRK13540 162 SLLTIITKIQEHRAK-GGAVLLT 183 (200)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEE
Confidence 899999999987554 5565533
No 206
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=9.1e-18 Score=170.70 Aligned_cols=169 Identities=19% Similarity=0.190 Sum_probs=129.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc--C---CCCCc-------c-------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGD-------G-------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~--~---~~G~i-------~-------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+ | ++|.+ . ..
T Consensus 5 l~~~nl~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 5 VKLEQLNVHFGKNHAVKDV-SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEeCCeeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 5677888888877899999 99999998665 99999999999999999985 3 46743 1 12
Q ss_pred ccceeEeeecCC--CCCc-eeeeeeecc----ccc------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc
Q 007511 341 KNIVSHLTEAPV--PGTT-LGIVRVEGV----LPA------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT-~~~i~~~~~----l~~------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL 402 (601)
++.+++++|.+. +.+| .+++.+... ... ..++++.+|+.. .++.+..||+||+||+++|++|
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 456899999865 6556 666653211 111 145677788742 4567899999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+..+..+..+++.... +.+++.+ ..+||++++|++|++..
T Consensus 164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14256 164 AVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVE 227 (252)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 9999999 78888999999998764 3466533 36899999999999843
No 207
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=1.8e-17 Score=163.16 Aligned_cols=164 Identities=19% Similarity=0.253 Sum_probs=117.7
Q ss_pred EEEeEeecCCc-----cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CC
Q 007511 283 FVSAVKNWGLK-----SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PG 354 (601)
Q Consensus 283 lvSa~kg~G~~-----~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pg 354 (601)
+.++.+.|+.. .+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+.... .++|++|.+. +.
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~-s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-~i~~~~q~~~l~~~ 80 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDI-NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-SIAYVSQEPWIQNG 80 (204)
T ss_pred EeEEEEecCCCCccccceeeee-eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-EEEEEecCchhccC
Confidence 45566667543 699999 99999997666 999999999999999999999999774332 6899999876 54
Q ss_pred Cceeeeeeeccccc--hhhhhccCCC-----------cC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------cc
Q 007511 355 TTLGIVRVEGVLPA--QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KA 411 (601)
Q Consensus 355 tT~~~i~~~~~l~~--~~~llDtpGL-----------~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~ 411 (601)
+..+++.+...... ..+.++..++ .. .++....||+||+||+++|++| +|+++++ |+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 44777766422221 1222333332 21 3455788999999999999999 9999999 67
Q ss_pred chHHHHHH-HHHHHHHhcCceEEEEE------EeecCEEEeecce
Q 007511 412 GHSIHIAG-LMRMDVEESSVESIYVT------VWASPYLPLHMGK 449 (601)
Q Consensus 412 ~~~~~l~~-lir~~~~~~g~tii~~~------~~ad~vl~l~~Gk 449 (601)
.....+.. +++....+ +.+++.++ ..||+++.|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLN-NKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 77777776 45544444 56666332 2388999888774
No 208
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.2e-17 Score=171.89 Aligned_cols=168 Identities=15% Similarity=0.198 Sum_probs=126.9
Q ss_pred EEEEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc---------cccceeEeee
Q 007511 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE---------EKNIVSHLTE 349 (601)
Q Consensus 281 V~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~---------~~~~i~~v~q 349 (601)
+.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+.. .+..++|++|
T Consensus 7 l~~~~l~~~~~~~~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 7 IVVNDVTVTWRNGHTALRDA-SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred EEEEeEEEEecCCcEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 55677778884 46799999 99999997655 9999999999999999999999996521 1235899998
Q ss_pred cCC----CCCc-eeeeeeecc-------cc-c-----hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 350 APV----PGTT-LGIVRVEGV-------LP-A-----QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 350 s~~----pgtT-~~~i~~~~~-------l~-~-----~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
.+. ..++ .+++.+... .. . ..++++.+|+.. .++.+..||+||+||+++|++| +|++++
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 165 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVIL 165 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 863 1223 344332100 00 0 145778889876 6788999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
| |+.....+..+++....+ +.+++.+ ..+||+++.+ +|++.
T Consensus 166 lDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~~~-~G~i~ 220 (272)
T PRK15056 166 LDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMV-KGTVL 220 (272)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE-CCEEE
Confidence 9 889999999999987655 6666633 3578888766 78874
No 209
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.72 E-value=1.3e-17 Score=171.72 Aligned_cols=170 Identities=15% Similarity=0.218 Sum_probs=129.1
Q ss_pred eEEEEEeEeec--CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~--G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
++.+.++.+.| +...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.. ..|.+ ...++.+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~i-sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENI-SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCCCCcceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 46677888888 456799999 99999997554 99999999999999999997 67844 1235679
Q ss_pred eEeeecCC--CCCceeeeeeecccc--chhhhhccCCCcC-cCCccCC-----------CCHHHHHHhcccccc--CCCE
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLP--AQAKLFDTPGLLH-PNQITTR-----------LTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~--~~~~llDtpGL~~-~~~~~~~-----------LSgGe~qrv~iaraL--~P~l 406 (601)
++++|.+. +++..+++....... ...+.++..|+.. .++.+.. ||+||+||+++||+| +|++
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999886 665577775321111 1245677788865 4445544 999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecch
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTENA 453 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~a 453 (601)
++| |+.....+..+++... . +.|++.++ ..||++++|++|++...
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAF-A-DCTVILSEHRIEAMLECQRFLVIEENKVRQY 217 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEECCHHHHHhCCEEEEecCCeEeec
Confidence 999 7888888888888653 3 56666432 35899999999998544
No 210
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.72 E-value=1.9e-17 Score=163.33 Aligned_cols=165 Identities=15% Similarity=0.267 Sum_probs=124.6
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i 344 (601)
.+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|.+|.+. ..++.+
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~i-sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNV-SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCc-eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 4667778888864 3689999 89999997655 999999999999999999999999641 124579
Q ss_pred eEeeecCC--CCCceeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccch
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGH 413 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~ 413 (601)
++++|.+. +++..+++.+.... ...++.+..+ .+..+..||+||+||+++|+++ +|++++| |+..
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~~-~~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 160 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDEY-SDEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160 (207)
T ss_pred EEEecCCcccCccHHHHhcccCCC-CHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence 99999875 55447776542111 1223333333 3456889999999999999999 9999999 7888
Q ss_pred HHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 414 SIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 414 ~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
...+..+++... + +.+++.++ ..||++++|++|++.
T Consensus 161 ~~~l~~~l~~~~-~-~~tiii~th~~~~~~~~d~v~~l~~g~i~ 202 (207)
T cd03369 161 DALIQKTIREEF-T-NSTILTIAHRLRTIIDYDKILVMDAGEVK 202 (207)
T ss_pred HHHHHHHHHHhc-C-CCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 888999998763 3 56666332 248999999999874
No 211
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.72 E-value=8.5e-18 Score=167.80 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=115.0
Q ss_pred EEEEeEeecCC-------ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc--------------
Q 007511 282 HFVSAVKNWGL-------KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------------- 339 (601)
Q Consensus 282 ~lvSa~kg~G~-------~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------------- 339 (601)
.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+++|+.|.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 3 EVEDLSKTFTLHQQGGVRLPVLKNV-SLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEeeEEEeecccCCCcceEEEecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 34566666742 3689999 99999998665 9999999999999999999999885421
Q ss_pred ------cccceeEeeecCC--CCCc-eeeeeeecc---cc------chhhhhccCCCcC--cCCccCCCCHHHHHHhccc
Q 007511 340 ------EKNIVSHLTEAPV--PGTT-LGIVRVEGV---LP------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNIN 399 (601)
Q Consensus 340 ------~~~~i~~v~qs~~--pgtT-~~~i~~~~~---l~------~~~~llDtpGL~~--~~~~~~~LSgGe~qrv~ia 399 (601)
.++.+++++|.+. +.+| .+++.+... .. ....+++.+|+.. .++.+..||+||+||+++|
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 161 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA 161 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence 1245899999865 5555 555543211 11 1145788889865 4678999999999999999
Q ss_pred ccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE
Q 007511 400 KEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV 435 (601)
Q Consensus 400 raL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~ 435 (601)
++| +|++++| |+.....+..+++....+ +.+++.+
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~v 205 (224)
T TIGR02324 162 RGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGI 205 (224)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999 9999999 888899999999987655 6666643
No 212
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.72 E-value=7.5e-18 Score=173.06 Aligned_cols=170 Identities=16% Similarity=0.255 Sum_probs=129.7
Q ss_pred EEEEEeEeecC---------CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------
Q 007511 281 LHFVSAVKNWG---------LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------ 338 (601)
Q Consensus 281 V~lvSa~kg~G---------~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------ 338 (601)
+.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||+|||||+++|+|+..|++|.+.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNV-SLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEece-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 34556666665 35799999 99999997655 999999999999999999999999541
Q ss_pred ---ccccceeEeeecC---C-CCCc-eeeeeeec----ccc------chhhhhccCCCc-C-cCCccCCCCHHHHHHhcc
Q 007511 339 ---EEKNIVSHLTEAP---V-PGTT-LGIVRVEG----VLP------AQAKLFDTPGLL-H-PNQITTRLTREEQKLVNI 398 (601)
Q Consensus 339 ---~~~~~i~~v~qs~---~-pgtT-~~~i~~~~----~l~------~~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~i 398 (601)
..++.+++++|.+ + +.+| .+++.+.. ... ...++++..|+. . .++.+..||+||+||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 1245799999986 2 4455 44442210 011 125678888986 3 678899999999999999
Q ss_pred cccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 399 NKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 399 araL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
|++| +|++++| |+.....+..+++....+.+.+++.++ .+||+++.|.+|++.
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 9999 9999999 788888899999887665466776443 479999999999874
No 213
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.72 E-value=6.7e-18 Score=168.92 Aligned_cols=158 Identities=20% Similarity=0.300 Sum_probs=122.7
Q ss_pred CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc---CCCCCcc---------ccccceeEeeecCC--CCCc
Q 007511 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD---AGRGGDG---------EEKNIVSHLTEAPV--PGTT 356 (601)
Q Consensus 292 ~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~---~~~G~i~---------~~~~~i~~v~qs~~--pgtT 356 (601)
...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+ +.+|.+. ..++.+++++|.+. ++.|
T Consensus 19 ~~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 97 (226)
T cd03234 19 YARILNDV-SLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLT 97 (226)
T ss_pred ccccccCc-eEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCc
Confidence 35789999 99999997655 99999999999999999998 8888541 23567899999865 6656
Q ss_pred -eeeeeeeccc------cc------hhh-hhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccc
Q 007511 357 -LGIVRVEGVL------PA------QAK-LFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAG 412 (601)
Q Consensus 357 -~~~i~~~~~l------~~------~~~-llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~ 412 (601)
.+++.+.... .. ..+ +++..++.. .++.+..||+||+||+++|++| +|++++| |+.
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~ 177 (226)
T cd03234 98 VRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177 (226)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHH
Confidence 6666542110 00 123 677778765 5677899999999999999999 9999999 888
Q ss_pred hHHHHHHHHHHHHHhcCceEEEE--------EEeecCEEEeecceec
Q 007511 413 HSIHIAGLMRMDVEESSVESIYV--------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 413 ~~~~l~~lir~~~~~~g~tii~~--------~~~ad~vl~l~~Gki~ 451 (601)
.+..+..+++....+ +.+++.+ ..+||++++|++|++.
T Consensus 178 ~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 178 TALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEE
Confidence 899999999987655 5666632 2468999999999874
No 214
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=6.7e-18 Score=186.91 Aligned_cols=179 Identities=13% Similarity=0.206 Sum_probs=131.3
Q ss_pred ceEEEEEeEeecCCc---cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------ccccc
Q 007511 279 TKLHFVSAVKNWGLK---SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKN 342 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~---~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~ 342 (601)
..|.+.++...|..+ .+++++ ++.+++|++.. |||||+||||+.+.|..++.|.+|.+ ...++
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~l-sfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNL-SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCc-eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 367888898888654 589999 99999997655 99999999999999999999999955 45678
Q ss_pred ceeEeeecCC-CCCc-eeeeeeeccccchhhh-------------hccC-CCcC-cCCccCCCCHHHHHHhcccccc--C
Q 007511 343 IVSHLTEAPV-PGTT-LGIVRVEGVLPAQAKL-------------FDTP-GLLH-PNQITTRLTREEQKLVNINKEL--K 403 (601)
Q Consensus 343 ~i~~v~qs~~-pgtT-~~~i~~~~~l~~~~~l-------------lDtp-GL~~-~~~~~~~LSgGe~qrv~iaraL--~ 403 (601)
+||+|-|.|. .++| .+||.+........++ ...| |... -...-.+||||||||++||||| +
T Consensus 543 ~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~ 622 (716)
T KOG0058|consen 543 KIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRN 622 (716)
T ss_pred HeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcC
Confidence 9999999998 5555 9999886432222111 1122 1111 2334568999999999999999 9
Q ss_pred CCEEEec-------cchHHHHHHHHHHHHHhcCceEEE------EEEeecCEEEeecceecch---HHHHHHH
Q 007511 404 PRTYRIK-------AGHSIHIAGLMRMDVEESSVESIY------VTVWASPYLPLHMGKTENA---CTMVEKH 460 (601)
Q Consensus 404 P~lllLD-------~~~~~~l~~lir~~~~~~g~tii~------~~~~ad~vl~l~~Gki~~a---~e~~~~~ 460 (601)
|++++|| ......+.+.+..... +.|++. ..+.||+++++++|++.+. +|++++.
T Consensus 623 P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 623 PRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred CCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence 9999994 4444455555554443 366662 2357899999999998665 5555543
No 215
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.72 E-value=8.8e-18 Score=187.78 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=129.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-------------cccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------------EKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------------~~~~i~~ 346 (601)
+.+.++.+.++ .+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+.. .++.++|
T Consensus 266 l~~~~l~~~~~--~~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~ 342 (510)
T PRK09700 266 FEVRNVTSRDR--KKVRDI-SFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY 342 (510)
T ss_pred EEEeCccccCC--Ccccce-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEE
Confidence 44455555443 489999 89999997655 9999999999999999999999996511 1346899
Q ss_pred eeecC----C-CCCc-eeeeeeecc------------ccc------hhhhhccCCCc-C-cCCccCCCCHHHHHHhcccc
Q 007511 347 LTEAP----V-PGTT-LGIVRVEGV------------LPA------QAKLFDTPGLL-H-PNQITTRLTREEQKLVNINK 400 (601)
Q Consensus 347 v~qs~----~-pgtT-~~~i~~~~~------------l~~------~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iar 400 (601)
++|.+ . +++| .+++.+... ... ..++++.+|+. . .++.+..|||||||||+||+
T Consensus 343 v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAr 422 (510)
T PRK09700 343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISK 422 (510)
T ss_pred ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHH
Confidence 99973 2 6656 666544211 011 14678889996 4 78899999999999999999
Q ss_pred cc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 401 EL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 401 aL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+| +|++++| |+..+..+..+++....+ |.+++. +..+||++++|++|++.
T Consensus 423 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 423 WLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred HHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 99 9999999 889999999999988765 667763 34589999999999874
No 216
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1.2e-17 Score=169.87 Aligned_cols=169 Identities=18% Similarity=0.172 Sum_probs=128.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC-----CCCc-------c-------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGD-------G-------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~-----~G~i-------~-------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|. .|.+ . ..
T Consensus 5 l~~~~l~~~~~~~~il~~~-s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 5 IKIRGVNFFYHKHQVLKNI-NMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred EEEEEEEEEECCeeEecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 4566777888777799999 99999997665 9999999999999999999887 4643 1 22
Q ss_pred ccceeEeeecCC--CCCceeeeeeecccc---c-------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVLP---A-------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l~---~-------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.++|++|.+. +.+..+++.+..... . ...+++..|+. . .++.+..||+||+||+++|++|
T Consensus 84 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 163 (251)
T PRK14249 84 RKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLA 163 (251)
T ss_pred hceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 456999999875 554477765432110 0 12345566763 2 5678899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++... + +.+++.+ ..+||++++|++|++..
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 164 IEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 9999999 8888999999998773 4 5666643 35789999999999843
No 217
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=1e-17 Score=170.25 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=129.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+| .+|.+. ..
T Consensus 5 l~~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 5 MESKNLNLWYGEKQALNDI-NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred EEEEEeEEEECCeeeeece-eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHH
Confidence 5567778888777899999 99999997665 999999999999999999875 677431 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeeccc----cc------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVL----PA------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l----~~------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.+++++|.+. +.+..+++.+.... .. ..++++.+|+. . .++.+..||+||+||+++|+++
T Consensus 84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 163 (251)
T PRK14270 84 RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA 163 (251)
T ss_pred HhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 456899999875 53337776542111 11 13577888874 2 5677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++.... +.+++.+ ..+||+++++++|++..
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999 88889999999998754 3556533 35789999999999843
No 218
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.71 E-value=1.3e-17 Score=167.93 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=120.7
Q ss_pred EEEeEeecCC---ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeE
Q 007511 283 FVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSH 346 (601)
Q Consensus 283 lvSa~kg~G~---~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~ 346 (601)
+.++.+.|+. ..+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+. ..++.++|
T Consensus 3 i~~l~~~~~~~~~~~~l~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (238)
T cd03249 3 FKNVSFRYPSRPDVPILKGL-SLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGL 81 (238)
T ss_pred EEEEEEecCCCCCccceece-EEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEE
Confidence 3455566643 3589999 89999997655 999999999999999999999999541 12356899
Q ss_pred eeecCC--CCCceeeeeeeccccch---hhhhccC-----------CCcC-cCCccCCCCHHHHHHhcccccc--CCCEE
Q 007511 347 LTEAPV--PGTTLGIVRVEGVLPAQ---AKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (601)
Q Consensus 347 v~qs~~--pgtT~~~i~~~~~l~~~---~~llDtp-----------GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ll 407 (601)
++|.+. +.+..+++.+....... ...++.. |+.. .++.+..||+||+||+++|++| +|+++
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 161 (238)
T cd03249 82 VSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKIL 161 (238)
T ss_pred ECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 998865 43336666543211111 1112222 3332 4556789999999999999999 99999
Q ss_pred Ee-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 408 RI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 408 lL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
+| |+..+..+..+++... + +.+++.++ .+||++++|++|++.
T Consensus 162 llDEP~~gLD~~~~~~l~~~l~~~~-~-g~~vi~~sh~~~~~~~~d~v~~l~~G~i~ 216 (238)
T cd03249 162 LLDEATSALDAESEKLVQEALDRAM-K-GRTTIVIAHRLSTIRNADLIAVLQNGQVV 216 (238)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhhCCEEEEEECCEEE
Confidence 98 8899999999998775 4 66666221 379999999999974
No 219
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.71 E-value=5.5e-18 Score=170.04 Aligned_cols=156 Identities=20% Similarity=0.163 Sum_probs=117.7
Q ss_pred ccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC----CCCCcc----------ccccceeEeeecCC----CCC
Q 007511 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA----GRGGDG----------EEKNIVSHLTEAPV----PGT 355 (601)
Q Consensus 295 LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~----~~G~i~----------~~~~~i~~v~qs~~----pgt 355 (601)
+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+| ++|.+. ..++.+++++|.+. +.+
T Consensus 1 ~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDL-NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred Cccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 35667 78888887655 999999999999999999998 788541 11357899999862 444
Q ss_pred c-eeeeeeecc----ccc-----hhhhhccCCCc---C-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccc
Q 007511 356 T-LGIVRVEGV----LPA-----QAKLFDTPGLL---H-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAG 412 (601)
Q Consensus 356 T-~~~i~~~~~----l~~-----~~~llDtpGL~---~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~ 412 (601)
| .+++.+... ... ..++++.+|+. . .++.+..||+||+||+++|+++ +|++++| |+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 5 333321110 011 24678888986 2 5778899999999999999999 9999999 788
Q ss_pred hHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 413 HSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 413 ~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
....+..+++....+.+.+++.++ .+||++++|++|++.
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 205 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV 205 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 888999999887665466666433 579999999999974
No 220
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.71 E-value=1.5e-17 Score=166.28 Aligned_cols=168 Identities=17% Similarity=0.177 Sum_probs=125.8
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccc
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNI 343 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~ 343 (601)
.+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|.+|.+. ..++.
T Consensus 11 ~l~~~~l~~~~~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 11 IVKFQNVTFAYPTRPDTLVLQDV-SFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred eEEEEEEEEEeCCCCCCccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 3567777788864 3589999 89999997655 999999999999999999999999541 12456
Q ss_pred eeEeeecCC--CCCceeeeeeeccccc------------hhhhhccC--CCcC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 344 VSHLTEAPV--PGTTLGIVRVEGVLPA------------QAKLFDTP--GLLH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 344 i~~v~qs~~--pgtT~~~i~~~~~l~~------------~~~llDtp--GL~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+++++|.+. +.+..+++.+...... ..++++.+ |+.. .++.+..||+||+||+++|++| +|
T Consensus 90 i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (226)
T cd03248 90 VSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169 (226)
T ss_pred EEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 899998875 4433666654221110 12445556 6765 5677899999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeeccee
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKT 450 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki 450 (601)
++++| |+..+..+..+++.... +.+++.++ ..||+++.|++|++
T Consensus 170 ~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 170 QVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999 88889999999987653 35665322 34899999988763
No 221
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.1e-17 Score=170.02 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=127.1
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcc---ccC--CCCCc-------c-------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS---VDA--GRGGD-------G-------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~---~~~--~~G~i-------~-------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+..|+++. +|+||+|||||+++|+|+ .++ ++|.+ . ..
T Consensus 4 l~~~~~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14245 4 IDARDVNFWYGDFHALKGI-SMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDEL 82 (250)
T ss_pred EEEEEEEEEECCEeEEeee-eEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHH
Confidence 4567777888877899999 89999997655 999999999999999996 343 36743 1 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeeccc----cc------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVL----PA------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l----~~------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.++|++|.+. +.+..+++.+.... .. ..++++.+|+.. .++.+..||+||+||+++|++|
T Consensus 83 ~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14245 83 RKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMA 162 (250)
T ss_pred hhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 456899999865 44336666432111 01 145678888742 4677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+.....+..+++... + +.+++.+ ..+||+++.|++|++.
T Consensus 163 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~ 224 (250)
T PRK14245 163 VSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMV 224 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 9999999 8888999999999874 4 4566633 3579999999999984
No 222
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.71 E-value=1.1e-17 Score=162.81 Aligned_cols=145 Identities=22% Similarity=0.269 Sum_probs=111.8
Q ss_pred CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------ccccceeEeeecC---C
Q 007511 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIVSHLTEAP---V 352 (601)
Q Consensus 291 G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i~~v~qs~---~ 352 (601)
+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.+++++|.+ .
T Consensus 3 ~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 3 GGPEVLKGL-NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred Cccceecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 345688898 89999997665 999999999999999999999999541 1234689999986 2
Q ss_pred CCCc-eeeeeeecc---cc------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccc
Q 007511 353 PGTT-LGIVRVEGV---LP------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAG 412 (601)
Q Consensus 353 pgtT-~~~i~~~~~---l~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~ 412 (601)
...| .+++.+... .. ...++++.+|+.. .++.+..||+||+||+++|++| +|++++| |+.
T Consensus 82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 3334 666654211 11 1146778889876 6788999999999999999999 9999999 888
Q ss_pred hHHHHHHHHHHHHHhcCceEEEEEE
Q 007511 413 HSIHIAGLMRMDVEESSVESIYVTV 437 (601)
Q Consensus 413 ~~~~l~~lir~~~~~~g~tii~~~~ 437 (601)
.+..+..+++....+ +.+++.++.
T Consensus 162 ~~~~~~~~l~~~~~~-~~tili~sH 185 (190)
T TIGR01166 162 GREQMLAILRRLRAE-GMTVVISTH 185 (190)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEee
Confidence 899999999887655 666665443
No 223
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9.1e-18 Score=171.35 Aligned_cols=169 Identities=17% Similarity=0.184 Sum_probs=128.0
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc--------------c
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG--------------E 339 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~--------------~ 339 (601)
.+.+.++.+.|+...+++++ ++.+.+|+++. +|+||||||||+++|+|+..| ++|.+. .
T Consensus 4 ~l~i~~v~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDV-NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECCEeeeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 35677888888777899999 99999997655 999999999999999999874 577431 1
Q ss_pred cccceeEeeecCC--CCCc-eeeeeeeccc----cc------hhhhhccCCCc----C-cCCccCCCCHHHHHHhccccc
Q 007511 340 EKNIVSHLTEAPV--PGTT-LGIVRVEGVL----PA------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKE 401 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT-~~~i~~~~~l----~~------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iara 401 (601)
.++.+++++|.+. +..| .+++.+.... .. ..++++.+|+. . .++.+..||+||+||+++|++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 2356899998764 5555 6666432111 11 13467778873 2 567789999999999999999
Q ss_pred c--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEee------cceec
Q 007511 402 L--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLH------MGKTE 451 (601)
Q Consensus 402 L--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~------~Gki~ 451 (601)
| +|++++| |+..+..+..+++... + +.+++.+ ..+||+++++. +|++.
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 9 9999999 8888999999998874 3 4566633 35789999996 68774
No 224
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.71 E-value=1.1e-17 Score=188.73 Aligned_cols=166 Identities=21% Similarity=0.167 Sum_probs=129.4
Q ss_pred EEEEEeEeecC-CccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCccc-cccceeEeeecCC--CCC
Q 007511 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGE-EKNIVSHLTEAPV--PGT 355 (601)
Q Consensus 281 V~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~-~~~~i~~v~qs~~--pgt 355 (601)
+.+.++.+.|+ .+.+++++ ++.+..|+++ ++|+||||||||+++|+|+.+|+.|.+.. ....+++++|.+. +..
T Consensus 7 l~i~~l~~~y~~~~~il~~v-s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 85 (556)
T PRK11819 7 YTMNRVSKVVPPKKQILKDI-SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDPEK 85 (556)
T ss_pred EEEeeEEEEeCCCCeeeeCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence 55677888887 67899999 9999999755 59999999999999999999999998743 2356899999875 555
Q ss_pred c-eeeeeeecc-----------------cc----------------------------chhhhhccCCCcCcCCccCCCC
Q 007511 356 T-LGIVRVEGV-----------------LP----------------------------AQAKLFDTPGLLHPNQITTRLT 389 (601)
Q Consensus 356 T-~~~i~~~~~-----------------l~----------------------------~~~~llDtpGL~~~~~~~~~LS 389 (601)
| .+++.+... .. ....+++.+|+...++.+..||
T Consensus 86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LS 165 (556)
T PRK11819 86 TVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLS 165 (556)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcC
Confidence 5 666543210 00 0134677788855678899999
Q ss_pred HHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 390 REEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 390 gGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
|||+|||+||++| +|++++| |+.....+..+++... + +++. +..+||+++.|++|++.
T Consensus 166 gGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~-tviiisHd~~~~~~~~d~i~~l~~g~i~ 239 (556)
T PRK11819 166 GGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---G-TVVAVTHDRYFLDNVAGWILELDRGRGI 239 (556)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---C-eEEEEeCCHHHHHhhcCeEEEEeCCEEE
Confidence 9999999999999 9999999 7888888888887642 3 5553 34578999999999863
No 225
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.71 E-value=2e-17 Score=157.37 Aligned_cols=142 Identities=22% Similarity=0.268 Sum_probs=102.2
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeee
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVR 361 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~ 361 (601)
+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|..|.+......+. ..
T Consensus 3 ~~~l~~~~~~~~vl~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~--------~~------ 67 (163)
T cd03216 3 LRGITKRFGGVKALDGV-SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS--------FA------ 67 (163)
T ss_pred EEEEEEEECCeEEEeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC--------cC------
Confidence 45666777767899999 99999997665 9999999999999999999999885321100000 00
Q ss_pred eeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceE
Q 007511 362 VEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVES 432 (601)
Q Consensus 362 ~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~ti 432 (601)
......-...|+ ..+||+||+||+++|+++ +|++++| |+.....+..+++....+ +.++
T Consensus 68 -----~~~~~~~~~i~~------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~ti 135 (163)
T cd03216 68 -----SPRDARRAGIAM------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAV 135 (163)
T ss_pred -----CHHHHHhcCeEE------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEE
Confidence 000000000111 112999999999999999 9999999 888899999999987655 6666
Q ss_pred EEE-------EEeecCEEEeecceec
Q 007511 433 IYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 433 i~~-------~~~ad~vl~l~~Gki~ 451 (601)
+.+ ..+||+++.+++|++.
T Consensus 136 ii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 136 IFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 633 3578999999999864
No 226
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.71 E-value=4.3e-18 Score=179.57 Aligned_cols=142 Identities=17% Similarity=0.197 Sum_probs=115.0
Q ss_pred EECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeecCC--CCCc-eeeeeeeccc---c------c
Q 007511 311 AIGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEAPV--PGTT-LGIVRVEGVL---P------A 368 (601)
Q Consensus 311 ivG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs~~--pgtT-~~~i~~~~~l---~------~ 368 (601)
++|+||||||||+++|+|+.+|++|.+. ..++.+++++|++. |++| .+++.+.... . .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 4799999999999999999999999541 22457999999875 7777 7777653211 1 1
Q ss_pred hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE--
Q 007511 369 QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-- 436 (601)
Q Consensus 369 ~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-- 436 (601)
..++++.+|+.. .++.+..|||||+||++||++| +|++++| |+..+..+..+++....+.+.+++.++
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 146788899976 7888999999999999999999 9999999 888999999999988766567777443
Q ss_pred -----EeecCEEEeecceecc
Q 007511 437 -----VWASPYLPLHMGKTEN 452 (601)
Q Consensus 437 -----~~ad~vl~l~~Gki~~ 452 (601)
.+||++++|++|++..
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~ 181 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQ 181 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEE
Confidence 4799999999999854
No 227
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.1e-17 Score=169.94 Aligned_cols=169 Identities=16% Similarity=0.151 Sum_probs=127.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+ +..|.+. ..
T Consensus 5 l~~~~l~~~~~~~~~l~~~-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 5 ISAKDVHLSYGNYEALHGI-SLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred EEEEeeEEEECCeeeeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 4567788888877899999 99999998655 99999999999999999986 3677431 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeeccc----cc------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVL----PA------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l----~~------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.+++++|.+. +.+..+++.+.... .. ..++++..|+. . .++.+..||+||+||+++|++|
T Consensus 84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 84 RKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred hccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 456899998865 43336666532111 01 13567777873 2 4677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++... + +.+++.+ ..+||++++|++|++..
T Consensus 164 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 164 VRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred cCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 9999999 7888999999998774 3 4566633 45799999999999843
No 228
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.4e-17 Score=171.03 Aligned_cols=170 Identities=16% Similarity=0.155 Sum_probs=129.9
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------c
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------E 339 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~ 339 (601)
-+.+.++.+.|+.+.+++++ ++.+.+|++++ +|+||||||||+++|+|+.. ++.|.+. .
T Consensus 20 ~l~~~nl~~~~~~~~il~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 20 ALSTKDLHVYYGKKEAIKGI-DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred EEEEeeEEEEECCeeeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 35667888888878899999 99999997665 99999999999999999986 4678431 1
Q ss_pred cccceeEeeecCC--CCCceeeeeeecccc----c------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc
Q 007511 340 EKNIVSHLTEAPV--PGTTLGIVRVEGVLP----A------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT~~~i~~~~~l~----~------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL 402 (601)
.++.+++++|.+. +.+..+++.+..... . ..++++..|+. . .++.+..||+||+||++||++|
T Consensus 99 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral 178 (267)
T PRK14237 99 MRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI 178 (267)
T ss_pred HhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 2456899999865 543377765431111 0 13456777773 2 5678899999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++... + +.+++.+ ..+||++++|++|++..
T Consensus 179 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 242 (267)
T PRK14237 179 AVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242 (267)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999 7888899999998774 3 4566643 35799999999999854
No 229
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.71 E-value=1.7e-17 Score=166.22 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=114.5
Q ss_pred cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhh
Q 007511 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL 372 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~l 372 (601)
..+++| ++.+.+|++.. ||.||||||||-++|+|+..|++|.+....+.+.. +. -........++
T Consensus 27 ~avd~V-sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~--------~~-----~~~~~~~v~el 92 (268)
T COG4608 27 KAVDGV-SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK--------LS-----KEERRERVLEL 92 (268)
T ss_pred EEecce-eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh--------cc-----hhHHHHHHHHH
Confidence 578888 89999998665 99999999999999999999999964322111110 11 00011123688
Q ss_pred hccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE------
Q 007511 373 FDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV------ 435 (601)
Q Consensus 373 lDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~------ 435 (601)
++..|+.. .++++++|||||+||+.||||| +|+++++ |...+..+..++..+..+.+.+.+++
T Consensus 93 L~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v 172 (268)
T COG4608 93 LEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV 172 (268)
T ss_pred HHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh
Confidence 99999876 7899999999999999999999 9999998 77778889999999888878887744
Q ss_pred -EEeecCEEEeecceecc
Q 007511 436 -TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 436 -~~~ad~vl~l~~Gki~~ 452 (601)
..++|++++|..|++.+
T Consensus 173 v~~isdri~VMy~G~iVE 190 (268)
T COG4608 173 VRYISDRIAVMYLGKIVE 190 (268)
T ss_pred hhhhcccEEEEecCceeE
Confidence 45899999999999844
No 230
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.71 E-value=1e-17 Score=206.98 Aligned_cols=181 Identities=11% Similarity=0.133 Sum_probs=143.2
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------cccccee
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~ 345 (601)
-+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+..|++|.+. ..++.+|
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~I-Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRL-CVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEee-EEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 3667788899985 5699999 99999998766 999999999999999999999999651 2345699
Q ss_pred EeeecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
|++|.+. +.+| .+++.+...+.+ ..++++.+||.. .++.+..||||||||+++|+|| +|++++|
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD 2095 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD 2095 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999865 6667 777654322211 135788899976 7888999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceecc--hHHHHHHHcC
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTEN--ACTMVEKHFG 462 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~~--a~e~~~~~~g 462 (601)
|+..+..+.++++....+ |.+++. +..+||++++|++|++.. ..+-++..+|
T Consensus 2096 EPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2096 EPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 899999999999987665 677763 345899999999999732 2233444555
No 231
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.4e-17 Score=169.27 Aligned_cols=167 Identities=19% Similarity=0.199 Sum_probs=126.9
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------cccc
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------EEKN 342 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~~~~ 342 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.. |+.|.+. ..++
T Consensus 8 ~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 86 (251)
T PRK14244 8 VKNLNLWYGSKQILFDI-NLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRA 86 (251)
T ss_pred eeeEEEEECCeeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhh
Confidence 45666777777899999 99999998765 99999999999999999976 3578441 1245
Q ss_pred ceeEeeecCC--CCCceeeeeeecccc----c-------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc--
Q 007511 343 IVSHLTEAPV--PGTTLGIVRVEGVLP----A-------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 343 ~i~~v~qs~~--pgtT~~~i~~~~~l~----~-------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
.++|++|.+. +++..+++.+..... . ..++++.+|+.. .++.+..||+||+||+++|++|
T Consensus 87 ~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 166 (251)
T PRK14244 87 KVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV 166 (251)
T ss_pred hEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc
Confidence 6899999864 654466665321110 0 135678888853 4567889999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceecc
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++... + +.+++. +..+||++++|++|++..
T Consensus 167 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 167 KPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 9999999 7888889999998764 3 566663 345799999999999843
No 232
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=1.1e-17 Score=186.66 Aligned_cols=169 Identities=18% Similarity=0.190 Sum_probs=131.4
Q ss_pred EEEEEeEeecC---CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-CCCCCccc-------------ccc
Q 007511 281 LHFVSAVKNWG---LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-AGRGGDGE-------------EKN 342 (601)
Q Consensus 281 V~lvSa~kg~G---~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-~~~G~i~~-------------~~~ 342 (601)
+.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+ +++|.+.. .+.
T Consensus 260 l~~~~l~~~~~~~~~~~vl~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 260 LEVRNLTAWDPVNPHIKRVDDV-SFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred EEEecCccccccccccccccce-eeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 45666777773 35689999 99999997655 99999999999999999998 48885421 134
Q ss_pred ceeEeeecC----C-CCCc-eeeeeeec--cc------cc------hhhhhccCCCc-C-cCCccCCCCHHHHHHhcccc
Q 007511 343 IVSHLTEAP----V-PGTT-LGIVRVEG--VL------PA------QAKLFDTPGLL-H-PNQITTRLTREEQKLVNINK 400 (601)
Q Consensus 343 ~i~~v~qs~----~-pgtT-~~~i~~~~--~l------~~------~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iar 400 (601)
.++|++|.+ . ++.| .+++.+.. .+ .. ..++++.+|+. . .++.+..|||||||||+||+
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~ 418 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK 418 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHH
Confidence 589999984 2 5556 66664321 01 11 24678999996 3 68889999999999999999
Q ss_pred cc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 401 EL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 401 aL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+| +|++++| |+..+..+..+++....+ |.+++. +..+||++++|++|++.
T Consensus 419 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 419 CLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKLK 484 (506)
T ss_pred HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99 9999999 899999999999988765 667763 44689999999999974
No 233
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.71 E-value=1.2e-17 Score=206.45 Aligned_cols=181 Identities=14% Similarity=0.158 Sum_probs=145.4
Q ss_pred eEEEEEeEeecC--CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------cccccee
Q 007511 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G--~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~ 345 (601)
.+.+.++.+.|+ .+.+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.+|
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~l-sl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRL-NITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEee-EEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 467788888884 46799999 99999998765 999999999999999999999999541 2346799
Q ss_pred EeeecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
+++|.+. +.+| .+++.+...+.+ ..++++.+||.+ .++.+..||||||||+++|+|| +|++++|
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD 1086 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD 1086 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999875 6777 777765322211 146788999977 7888999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc--hHHHHHHHcCC
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN--ACTMVEKHFGR 463 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~--a~e~~~~~~g~ 463 (601)
|+..+..+.++++... + |.+++.++ .+||++++|++|++.. ..+.+++++|.
T Consensus 1087 EPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~ 1153 (2272)
T TIGR01257 1087 EPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGT 1153 (2272)
T ss_pred CCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCC
Confidence 8999999999999874 4 66776433 4799999999999833 34567777775
No 234
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.71 E-value=1e-17 Score=188.04 Aligned_cols=170 Identities=18% Similarity=0.216 Sum_probs=128.3
Q ss_pred EEEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc------------
Q 007511 281 LHFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG------------ 338 (601)
Q Consensus 281 V~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~------------ 338 (601)
+.+.++.+.|+. ..+++++ ++.+..|++++ +|+||||||||+++|+|+++| ++|.+.
T Consensus 6 l~~~~l~~~~~~~~~~~~~l~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 6 LAIENLSVAFRQQQTVRTVVNDV-SLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred EEEeceEEEecCCCCceeeeece-EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 445566667752 4699999 99999997655 999999999999999999986 577531
Q ss_pred ---cc-ccceeEeeecCC----CCCc-eeeeeeec----cccc------hhhhhccCCCcC----cCCccCCCCHHHHHH
Q 007511 339 ---EE-KNIVSHLTEAPV----PGTT-LGIVRVEG----VLPA------QAKLFDTPGLLH----PNQITTRLTREEQKL 395 (601)
Q Consensus 339 ---~~-~~~i~~v~qs~~----pgtT-~~~i~~~~----~l~~------~~~llDtpGL~~----~~~~~~~LSgGe~qr 395 (601)
.. ++.+++++|.+. +.+| .+++.+.. .... ..++++.+||.. .++.+.+|||||+||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 01 246999999862 4445 33332110 0111 146788899964 477899999999999
Q ss_pred hcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 396 VNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 396 v~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+||++| +|++++| |+..+..+.++++....+.+.+++.+ ..+||++++|++|++.
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 9999999 9999999 89999999999998866546677633 3579999999999873
No 235
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.71 E-value=3.5e-17 Score=156.13 Aligned_cols=141 Identities=21% Similarity=0.186 Sum_probs=106.1
Q ss_pred EEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcccc-ccceeEeeecCC-CCCc-e
Q 007511 283 FVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPV-PGTT-L 357 (601)
Q Consensus 283 lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~-~~~i~~v~qs~~-pgtT-~ 357 (601)
+.++.+.|+ .+.+++++ ++.+.+|++++ +|+||+|||||+++|+|+.++++|.+... .+.++|++|.+. +..| .
T Consensus 3 ~~~~~~~~~~~~~~l~~i-~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~ 81 (166)
T cd03223 3 LENLSLATPDGRVLLKDL-SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLR 81 (166)
T ss_pred EEEEEEEcCCCCeeeecC-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHH
Confidence 345556664 35689999 99999997655 99999999999999999999999976432 256899988764 3333 4
Q ss_pred eeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhc
Q 007511 358 GIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEES 428 (601)
Q Consensus 358 ~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~ 428 (601)
+++.+. ....||+||+||+++|+++ +|++++| |+.....+..+++..
T Consensus 82 ~nl~~~--------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---- 137 (166)
T cd03223 82 EQLIYP--------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---- 137 (166)
T ss_pred HHhhcc--------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----
Confidence 443320 3578999999999999999 9999999 788888888888754
Q ss_pred CceEEEE------EEeecCEEEeecc
Q 007511 429 SVESIYV------TVWASPYLPLHMG 448 (601)
Q Consensus 429 g~tii~~------~~~ad~vl~l~~G 448 (601)
+.+++.+ ..+||+++.++++
T Consensus 138 ~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 138 GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 3455522 2477888877654
No 236
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=2.5e-17 Score=162.73 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=118.5
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc---------cccceeEeeec
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE---------EKNIVSHLTEA 350 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~---------~~~~i~~v~qs 350 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.++++|.+.. .++.++++++.
T Consensus 3 l~~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGL-SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEeEEEEECCeEEEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 4566777888777899999 99999997665 9999999999999999999999996521 23457888765
Q ss_pred CC--CCCc-eeeeeeecccc-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccc
Q 007511 351 PV--PGTT-LGIVRVEGVLP-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAG 412 (601)
Q Consensus 351 ~~--pgtT-~~~i~~~~~l~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~ 412 (601)
.. +..| .+++.+..... ...++++.+|+.. .++.+..||+||+||+++|+++ +|++++| |+.
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 161 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 43 4455 66654321111 1256788889875 5778899999999999999999 9999999 788
Q ss_pred hHHHHHHHHHHHHHhcCceEEEEE
Q 007511 413 HSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 413 ~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
....+.++++....+ +.+++.++
T Consensus 162 ~~~~l~~~l~~~~~~-~~tiii~s 184 (207)
T PRK13539 162 AVALFAELIRAHLAQ-GGIVIAAT 184 (207)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEe
Confidence 899999999887655 66665443
No 237
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.70 E-value=2.7e-17 Score=163.80 Aligned_cols=168 Identities=17% Similarity=0.265 Sum_probs=123.8
Q ss_pred EEEEEeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------cccccee
Q 007511 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~ 345 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|..|.+. ..++.++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNI-SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEEEecCCCCcccccce-EEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 456677777753 3699999 99999998766 999999999999999999999999541 2356789
Q ss_pred EeeecCC--CCCceeeeeeecccc--chhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEE
Q 007511 346 HLTEAPV--PGTTLGIVRVEGVLP--AQAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTY 407 (601)
Q Consensus 346 ~v~qs~~--pgtT~~~i~~~~~l~--~~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~ll 407 (601)
+++|.+. +++..+++.+..... ...+.++..|+.. .++.+..||+||+||+++|++| +|+++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999876 443366665321111 1123344444432 2457889999999999999999 99999
Q ss_pred Ee-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 408 RI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 408 lL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
+| |+.....+..+++.... +.+++.++ ..||+++.|++|++.
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~d~i~~l~~g~~~ 216 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTIIDSDRILVLDKGRVV 216 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHhhCCEEEEEECCeEE
Confidence 99 88888999999987643 35555322 348999999999874
No 238
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.5e-17 Score=170.83 Aligned_cols=166 Identities=15% Similarity=0.187 Sum_probs=125.7
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------c
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------E 339 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~ 339 (601)
.+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+ |+.|.+. .
T Consensus 13 ~l~i~nl~~~~~~~~il~~i-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~ 91 (269)
T PRK14259 13 IISLQNVTISYGTFEAVKNV-FCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE 91 (269)
T ss_pred eEEEEeEEEEECCEEEEcce-EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHH
Confidence 36677888888877899999 99999997655 99999999999999999986 4777431 1
Q ss_pred cccceeEeeecCC--CCCceeeeeeecccc---c-----hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc--
Q 007511 340 EKNIVSHLTEAPV--PGTTLGIVRVEGVLP---A-----QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT~~~i~~~~~l~---~-----~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
.++.++|++|.+. +.+..+++.+..... . ...+++.+|+. . .++.+..||+||+||+++|++|
T Consensus 92 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 171 (269)
T PRK14259 92 VRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI 171 (269)
T ss_pred HhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 2346899999875 543367665432111 1 13456777663 2 5777899999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecc
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMG 448 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~G 448 (601)
+|++++| |+.....+.++++... + +.+++. +..+||++++|++|
T Consensus 172 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~ 229 (269)
T PRK14259 172 EPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAE 229 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEecc
Confidence 9999999 7888999999998774 3 456663 34589999999973
No 239
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.3e-17 Score=165.96 Aligned_cols=166 Identities=17% Similarity=0.201 Sum_probs=119.9
Q ss_pred EEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEee
Q 007511 283 FVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHLT 348 (601)
Q Consensus 283 lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v~ 348 (601)
+.++.+.|+ ...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.++|++
T Consensus 3 ~~~l~~~~~~~~~~l~~i-~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 81 (236)
T cd03253 3 FENVTFAYDPGRPVLKDV-SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVP 81 (236)
T ss_pred EEEEEEEeCCCCceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEEC
Confidence 345566664 45689999 99999997655 999999999999999999999999541 1234689999
Q ss_pred ecCC--CCCceeeeeeeccccc---hhhhhccC-----------CCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 349 EAPV--PGTTLGIVRVEGVLPA---QAKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 349 qs~~--pgtT~~~i~~~~~l~~---~~~llDtp-----------GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
|.+. +.+..+++.+...... ....++.. |+.. .++.+..||+||+||+++|++| +|++++|
T Consensus 82 q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llll 161 (236)
T cd03253 82 QDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLL 161 (236)
T ss_pred CCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8875 5443676654311111 01112222 3322 3455789999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
|+.....+..++..... +.+++.++ ..||+++.|++|++.
T Consensus 162 DEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~~~~d~~~~l~~g~i~ 214 (236)
T cd03253 162 DEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVNADKIIVLKDGRIV 214 (236)
T ss_pred eCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 78888899999987653 56666322 248999999999874
No 240
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.8e-17 Score=169.32 Aligned_cols=168 Identities=16% Similarity=0.172 Sum_probs=127.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc--C---CCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~--~---~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.. | ++|.+. ..
T Consensus 13 l~i~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 91 (259)
T PRK14274 13 YQINGMNLWYGQHHALKNI-NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91 (259)
T ss_pred EEEeeEEEEECCeeeEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHH
Confidence 5677888888877899999 99999997655 99999999999999999986 3 467431 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeeccc----cc------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVL----PA------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l----~~------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.++|++|.+. +.+..+++.+.... .. ..++++..|+.. .++.+..||+||+||+++|++|
T Consensus 92 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~ 171 (259)
T PRK14274 92 RKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALA 171 (259)
T ss_pred hhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHh
Confidence 456899999865 54336666542111 11 124566777742 4677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+.....+..+++.... +.+++.+ ..+||++++|++|++.
T Consensus 172 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 233 (259)
T PRK14274 172 TNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQQAARVSDQTAFFYMGELV 233 (259)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 78889999999988753 4566633 3478999999999984
No 241
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.70 E-value=5.4e-17 Score=184.51 Aligned_cols=168 Identities=14% Similarity=0.112 Sum_probs=124.2
Q ss_pred eEEEEEeEe-ecCCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------ccccccee
Q 007511 280 KLHFVSAVK-NWGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~k-g~G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~ 345 (601)
.|.+.++.. .++.+.+++++ ++.+++|+. ++||+||+|||||++.|+|++ |.+|.+ ...++.++
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i-~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~ 426 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPL-NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426 (588)
T ss_pred eEEEEeeEEeccCCCeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheE
Confidence 466667753 34456799999 999999865 559999999999999999999 889954 23467899
Q ss_pred EeeecCC--CCCceeeeeeecc-ccc--hhhhhccCCC-----------cC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 346 HLTEAPV--PGTTLGIVRVEGV-LPA--QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 346 ~v~qs~~--pgtT~~~i~~~~~-l~~--~~~llDtpGL-----------~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
+++|.++ .+|-++|+.+... ... ..+.++..|+ .. -......|||||+||++||||+ +|++
T Consensus 427 ~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~I 506 (588)
T PRK11174 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL 506 (588)
T ss_pred EecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998 6655999887421 111 1233333333 22 2223457999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++| |......+...++.... +.|++.++ ..||+++++++|++.
T Consensus 507 liLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 507 LLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecChHHHHhCCEEEEEeCCeEe
Confidence 999 77778888887776542 46666443 368999999999984
No 242
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.8e-17 Score=186.04 Aligned_cols=165 Identities=16% Similarity=0.249 Sum_probs=126.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcccc-ccceeEeeecCC--CCCc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPV--PGTT 356 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~-~~~i~~v~qs~~--pgtT 356 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|+.|.+... ...+++++|.+. +..|
T Consensus 2 l~i~~ls~~~~~~~il~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~t 80 (530)
T PRK15064 2 LSTANITMQFGAKPLFENI-SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFT 80 (530)
T ss_pred EEEEEEEEEeCCcEeEeCC-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCc
Confidence 3456777788877899999 99999997655 99999999999999999999999976432 346899999764 4444
Q ss_pred -eeeeeeecc-----------------------------------c------cchhhhhccCCCcC--cCCccCCCCHHH
Q 007511 357 -LGIVRVEGV-----------------------------------L------PAQAKLFDTPGLLH--PNQITTRLTREE 392 (601)
Q Consensus 357 -~~~i~~~~~-----------------------------------l------~~~~~llDtpGL~~--~~~~~~~LSgGe 392 (601)
.+++.+... . .....+++.+|+.. .++.+..|||||
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 444432100 0 00135788889865 356789999999
Q ss_pred HHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 393 QKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 393 ~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
+|||++|++| +|++++| |+..+..+..+++. . +.+++. +..+||+++.|++|++
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~-~~tiiivsHd~~~~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---R-NSTMIIISHDRHFLNSVCTHMADLDYGEL 230 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---C-CCeEEEEeCCHHHHHhhcceEEEEeCCEE
Confidence 9999999999 9999999 78888888888753 2 556663 3468999999999987
No 243
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.9e-17 Score=170.38 Aligned_cols=169 Identities=20% Similarity=0.180 Sum_probs=129.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+..+ .+|.+. ..
T Consensus 26 l~~~nl~~~~~~~~il~~v-s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~ 104 (272)
T PRK14236 26 LEVRNLNLFYGDKQALFDI-SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL 104 (272)
T ss_pred EEEEEEEEEECCeeEeeeE-EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence 5567788888777899999 99999997665 999999999999999999873 678431 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeecccc---c-------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVLP---A-------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l~---~-------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.++|++|.+. +.+..+++.+..... . ..++++..|+.. .++.+..||+||+||+++|+++
T Consensus 105 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 184 (272)
T PRK14236 105 RRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIA 184 (272)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 457899999864 553366665421111 0 134667777742 5677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++.... +.+++.+ ..+||++++|++|++..
T Consensus 185 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 247 (272)
T PRK14236 185 IEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVE 247 (272)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEe
Confidence 9999999 88889999999998754 4566533 35799999999999843
No 244
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.7e-17 Score=168.55 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=126.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc--C---CCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~--~---~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.. | ++|.+. ..
T Consensus 6 l~~~~l~~~~~~~~~l~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 6 LQVSDLSVYYNKKKALNSV-SLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred EEEEeeEEEECCeeeeeee-eEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 5567778888777899999 99999997555 99999999999999999853 5 367431 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeecc---cc-c------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGV---LP-A------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~---l~-~------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.+++++|.+. +.+..+++.+... .. . ...+++..|+. . .++.+..||+||+||+++|++|
T Consensus 85 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14239 85 RKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA 164 (252)
T ss_pred hhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 456899999875 4333676653211 11 1 12356777763 2 5678899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++.... +.+++.+ ..+||++++|++|++..
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 165 TSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 88889999999988753 3566633 35789999999999853
No 245
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2e-17 Score=174.48 Aligned_cols=172 Identities=19% Similarity=0.176 Sum_probs=129.3
Q ss_pred eEEEEEeEeecC--CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc-------------
Q 007511 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG------------- 338 (601)
Q Consensus 280 ~V~lvSa~kg~G--~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~------------- 338 (601)
.+.+.++...|. ...+++++ ++.+.+|++++ +|+||||||||+++|+|+.. |+.|.+.
T Consensus 80 ~i~~~nls~~y~~~~~~~L~~i-s~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 80 VFEIRNFNFWYMNRTKHVLHDL-NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred eEEEEeeEEEecCCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 366777777774 35689999 99999997555 99999999999999999986 4577531
Q ss_pred -ccccceeEeeecCC--CCCceeeeeeecccc---c-------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccc
Q 007511 339 -EEKNIVSHLTEAPV--PGTTLGIVRVEGVLP---A-------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINK 400 (601)
Q Consensus 339 -~~~~~i~~v~qs~~--pgtT~~~i~~~~~l~---~-------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iar 400 (601)
..++.+++++|.++ +++..+++.+..... . ...+++..++. . .++....|||||+||++|||
T Consensus 159 ~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR 238 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR 238 (329)
T ss_pred HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence 23567999999987 444478776432111 1 12345666653 1 46778999999999999999
Q ss_pred cc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecchH
Q 007511 401 EL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTENAC 454 (601)
Q Consensus 401 aL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~a~ 454 (601)
|| +|++++| |+.....+..+++.... +.|++.++ .+||++++|++|++....
T Consensus 239 Al~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 239 AIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99 9999999 78888889999987654 46666433 469999999999985543
No 246
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2.3e-17 Score=167.46 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=127.5
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc--------------c
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG--------------E 339 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~--------------~ 339 (601)
.+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.++ ++|.+. .
T Consensus 3 ~l~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKI-NLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEECCceeeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 35667888888777899999 99999997665 999999999999999998753 567431 1
Q ss_pred cccceeEeeecCC--CCCceeeeeeecccc----c------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc
Q 007511 340 EKNIVSHLTEAPV--PGTTLGIVRVEGVLP----A------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT~~~i~~~~~l~----~------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL 402 (601)
.++.+++++|.+. +.+..+++.+..... . ..++++..|+. . .++.+..||+||+||+++|++|
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 2456899999865 533366665421111 0 13456677763 2 4677899999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceecc
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+..+..+..+++... + +.+++. +..+||+++++++|++..
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 9999999 8888999999998874 3 456663 345789999999999853
No 247
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.70 E-value=1.6e-17 Score=160.76 Aligned_cols=142 Identities=16% Similarity=0.190 Sum_probs=106.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------ccccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~~~~i~~ 346 (601)
+.+.++.+.| +++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+. ..++.+++
T Consensus 5 l~~~~l~~~~----~l~~v-s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 5 LEVRGLSVKG----AVRDV-SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EEEeccEEEe----eecce-EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence 4455555665 88898 89999997655 999999999999999999999999541 12345788
Q ss_pred eeecC-----CCCCc-eeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------cc
Q 007511 347 LTEAP-----VPGTT-LGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KA 411 (601)
Q Consensus 347 v~qs~-----~pgtT-~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~ 411 (601)
++|.+ .+..| .+++.+. ..||+||+||+++|+++ +|++++| |+
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~----------------------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~ 137 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALS----------------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDV 137 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHH----------------------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCH
Confidence 87763 13333 3332211 01999999999999999 9999999 88
Q ss_pred chHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeeccee
Q 007511 412 GHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKT 450 (601)
Q Consensus 412 ~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki 450 (601)
..+..+..+++....+ +.+++.+ ..+||+++++++|++
T Consensus 138 ~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 138 GAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 8999999999987654 5666633 346899999988863
No 248
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.70 E-value=1.2e-17 Score=169.39 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=112.6
Q ss_pred cccCCcE-EEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCc-eeeeeeecc-cc----chhhhh
Q 007511 303 AGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTT-LGIVRVEGV-LP----AQAKLF 373 (601)
Q Consensus 303 ~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT-~~~i~~~~~-l~----~~~~ll 373 (601)
.+..|++ +++|+||||||||+++|+|+.+|++|.+......+++++|... +..| .+++..... .. ...+++
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l 100 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIA 100 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHH
Confidence 3456765 5599999999999999999999999987554457899999864 4445 555432111 11 125678
Q ss_pred ccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------
Q 007511 374 DTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------- 436 (601)
Q Consensus 374 DtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------- 436 (601)
+.+|+.. .++.+..|||||+||++||++| +|++++| |+..+..+..+++....+.+.+++.++
T Consensus 101 ~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~ 180 (246)
T cd03237 101 KPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMID 180 (246)
T ss_pred HHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 8889876 6788999999999999999999 9999999 888999999999988765466766433
Q ss_pred EeecCEEEeecc
Q 007511 437 VWASPYLPLHMG 448 (601)
Q Consensus 437 ~~ad~vl~l~~G 448 (601)
.+||++++|+.+
T Consensus 181 ~~~d~i~~l~~~ 192 (246)
T cd03237 181 YLADRLIVFEGE 192 (246)
T ss_pred HhCCEEEEEcCC
Confidence 478999988653
No 249
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.8e-17 Score=168.33 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=126.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+..+ ++|.+. ..
T Consensus 4 l~~~~l~~~~~~~~~l~~i-~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 4 IEIENFSAYYGEKKAVKNV-TMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred EEEEeeEEEeCCceeEeee-eEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 4566777788777899999 99999997655 999999999999999999873 677431 12
Q ss_pred ccceeEeeecCC--CCCc-eeeeeeeccc---cc-------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc
Q 007511 341 KNIVSHLTEAPV--PGTT-LGIVRVEGVL---PA-------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT-~~~i~~~~~l---~~-------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL 402 (601)
++.+++++|.+. + .| .+++.+.... .. ..++++..|+.. .++.+..||+||+||+++|+++
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 456899999865 4 45 6666542111 00 134567777742 5677899999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+.....+..+++.... +.+++. +..+||+++++++|++.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~G~i~ 224 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMYRGELI 224 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999 88888899999988753 456653 33578999999999984
No 250
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.70 E-value=2e-17 Score=161.86 Aligned_cols=150 Identities=25% Similarity=0.286 Sum_probs=115.1
Q ss_pred EEEEEeEeecCC------ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccc--cCCCCCcc---------cccc
Q 007511 281 LHFVSAVKNWGL------KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDG---------EEKN 342 (601)
Q Consensus 281 V~lvSa~kg~G~------~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~--~~~~G~i~---------~~~~ 342 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+. +|..|.+. ..++
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~-~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNV-SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecc-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 556677777764 5799999 99999997665 9999999999999999999 99999651 2345
Q ss_pred ceeEeeecCC--CCCc-eeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------c
Q 007511 343 IVSHLTEAPV--PGTT-LGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------K 410 (601)
Q Consensus 343 ~i~~v~qs~~--pgtT-~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D 410 (601)
.+++++|.+. ++.| .+++.+.. . ...||+||+||+++|++| +|++++| |
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~------~-------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD 143 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAA------K-------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHH------H-------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 6788887754 4445 44332210 0 117999999999999999 9999999 7
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEEE--------EeecCEEEeecceec
Q 007511 411 AGHSIHIAGLMRMDVEESSVESIYVT--------VWASPYLPLHMGKTE 451 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~~g~tii~~~--------~~ad~vl~l~~Gki~ 451 (601)
+..+..+..+++....+ +.+++.++ .+||++++|++|++.
T Consensus 144 ~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 144 SSSALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCEEE
Confidence 88899999999987655 66766332 358999999999864
No 251
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.70 E-value=3e-17 Score=161.30 Aligned_cols=147 Identities=21% Similarity=0.209 Sum_probs=110.6
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcc--ccCCCCCcc------------c-cccceeE
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDG------------E-EKNIVSH 346 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~--~~~~~G~i~------------~-~~~~i~~ 346 (601)
+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+ ..|+.|.+. . .+..+++
T Consensus 3 ~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (200)
T cd03217 3 IKDLHVSVGGKEILKGV-NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL 81 (200)
T ss_pred EEEEEEEeCCEEeeecc-ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE
Confidence 34556667666799999 99999997655 999999999999999999 478888541 0 1234778
Q ss_pred eeecCC--CCCceeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHH
Q 007511 347 LTEAPV--PGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSI 415 (601)
Q Consensus 347 v~qs~~--pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~ 415 (601)
++|.+. ++++..+ ++ +.....||+||+||+++|+++ +|++++| |+....
T Consensus 82 v~q~~~~~~~~~~~~------------~l--------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 141 (200)
T cd03217 82 AFQYPPEIPGVKNAD------------FL--------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALR 141 (200)
T ss_pred eecChhhccCccHHH------------HH--------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 877654 4444211 11 123357999999999999999 9999999 788888
Q ss_pred HHHHHHHHHHHhcCceEEEEE-------E-eecCEEEeecceec
Q 007511 416 HIAGLMRMDVEESSVESIYVT-------V-WASPYLPLHMGKTE 451 (601)
Q Consensus 416 ~l~~lir~~~~~~g~tii~~~-------~-~ad~vl~l~~Gki~ 451 (601)
.+..+++....+ +.+++.++ . +||+++.|++|++.
T Consensus 142 ~l~~~L~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 184 (200)
T cd03217 142 LVAEVINKLREE-GKSVLIITHYQRLLDYIKPDRVHVLYDGRIV 184 (200)
T ss_pred HHHHHHHHHHHC-CCEEEEEecCHHHHHHhhCCEEEEEECCEEE
Confidence 999999887654 56666333 4 69999999999874
No 252
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.70 E-value=2.1e-17 Score=184.26 Aligned_cols=169 Identities=20% Similarity=0.183 Sum_probs=130.6
Q ss_pred EEEEEeEeec---CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-CCCCcc-------------cccc
Q 007511 281 LHFVSAVKNW---GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-GRGGDG-------------EEKN 342 (601)
Q Consensus 281 V~lvSa~kg~---G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-~~G~i~-------------~~~~ 342 (601)
+.+.++.+.| +...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+| ++|.+. ..++
T Consensus 258 l~~~~l~~~~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 258 LEARNLTCWDVINPHRKRVDDV-SFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred EEEeCCcccccccccccccccc-eeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 4556666666 345689999 99999997655 999999999999999999985 788552 1135
Q ss_pred ceeEeeecC-----CCCCc-eeeeeeec--------cccc------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccc
Q 007511 343 IVSHLTEAP-----VPGTT-LGIVRVEG--------VLPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINK 400 (601)
Q Consensus 343 ~i~~v~qs~-----~pgtT-~~~i~~~~--------~l~~------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iar 400 (601)
.+++++|.+ .|..| .+++.+.. .... ..++++.+|+.. .++.+..|||||+||++||+
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~ 416 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK 416 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence 689999984 25555 56554421 0111 146788899963 68889999999999999999
Q ss_pred cc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 401 EL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 401 aL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+| +|++++| |+..+..+..+++....+ |.+++. +..+||+++++++|++.
T Consensus 417 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 417 MLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 99 9999999 889999999999988766 666663 44689999999999874
No 253
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.6e-17 Score=172.26 Aligned_cols=169 Identities=17% Similarity=0.150 Sum_probs=127.5
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.. |+.|.+. ..
T Consensus 40 l~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~ 118 (286)
T PRK14275 40 VVAKNFSIYYGEFEAVKKV-NADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL 118 (286)
T ss_pred EEEeeeEEEECCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHh
Confidence 5567778888777799999 99999998665 99999999999999999864 3777431 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeecc---ccc-------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGV---LPA-------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~---l~~-------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.++|++|.+. +.+..+++.+... ... ..++++.+|+. . .++.+..||+||+||+++|++|
T Consensus 119 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 198 (286)
T PRK14275 119 RKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLA 198 (286)
T ss_pred hhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHh
Confidence 456899999865 5433777654211 111 13566777763 2 5677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++.... +.+++.++ .+||++++|++|++..
T Consensus 199 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 199 VEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 78888899999987653 35666433 5799999999999843
No 254
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2.1e-17 Score=170.39 Aligned_cols=169 Identities=19% Similarity=0.237 Sum_probs=129.0
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc-------------ccc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG-------------EEK 341 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~-------------~~~ 341 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+| ++|.+. ..+
T Consensus 22 l~i~nl~~~~~~~~il~~v-s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (276)
T PRK14271 22 MAAVNLTLGFAGKTVLDQV-SMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFR 100 (276)
T ss_pred EEEeeEEEEECCEEEeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHh
Confidence 5677888889888899999 99999997655 999999999999999999985 577431 124
Q ss_pred cceeEeeecCC--CCCceeeeeeeccc----cc------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc--
Q 007511 342 NIVSHLTEAPV--PGTTLGIVRVEGVL----PA------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT~~~i~~~~~l----~~------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
+.++|++|.+. +.+..+++.+.... .. ..++++.+|+.. .++.+..||+||+||++||++|
T Consensus 101 ~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~ 180 (276)
T PRK14271 101 RRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAV 180 (276)
T ss_pred hheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 56899999865 53336666542111 11 134567778753 4567889999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++.... +.+++.+ ..+||++++|++|++..
T Consensus 181 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 181 NPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 78888889999887754 3566643 35799999999999843
No 255
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.7e-17 Score=168.39 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=126.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc-------------ccc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG-------------EEK 341 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~-------------~~~ 341 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.++ ++|.+. ..+
T Consensus 4 l~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 4 FNIENLDLFYGENQALKSI-NLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred EEEeccEEEECCeeeeecc-eEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 4456777778777899999 99999998766 999999999999999999886 467421 124
Q ss_pred cceeEeeecCC--CCCceeeeeeeccc---cc-------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc--
Q 007511 342 NIVSHLTEAPV--PGTTLGIVRVEGVL---PA-------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT~~~i~~~~~l---~~-------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
+.++|++|.+. +.+..+++.+.... .. ..++++..|+.. .++.+..||+||+||++||++|
T Consensus 83 ~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (249)
T PRK14253 83 IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM 162 (249)
T ss_pred hheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence 56899999875 53336666542111 10 123566667632 4667889999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+..+..+..+++.... +.+++.+ ..+||++++|++|++..
T Consensus 163 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~ 224 (249)
T PRK14253 163 EPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVE 224 (249)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 78888999999998754 3566633 35799999999999853
No 256
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=2.3e-17 Score=167.65 Aligned_cols=169 Identities=22% Similarity=0.236 Sum_probs=125.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC-----CCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~-----~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+..|. +|.+. ..
T Consensus 5 l~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 5 LSAQDVNIYYGDKQAVKNV-NLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEeeeEEEECCEEeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 4456777788777899999 99999997654 9999999999999999998764 57431 12
Q ss_pred ccceeEeeecCC--CCCc-eeeeeeeccc---cch-------hhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc
Q 007511 341 KNIVSHLTEAPV--PGTT-LGIVRVEGVL---PAQ-------AKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT-~~~i~~~~~l---~~~-------~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL 402 (601)
++.++|++|.+. ++.| .+++.+.... ... ..++...++. . .++.+..||+||+||+++|++|
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 346899999875 5555 6666432111 011 1234445442 2 4677899999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++... + +.+++.+ ..+||++++|++|++..
T Consensus 164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14272 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVE 227 (252)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 7888899999998875 3 4566633 34799999999999843
No 257
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.70 E-value=6.4e-17 Score=155.92 Aligned_cols=142 Identities=19% Similarity=0.241 Sum_probs=107.0
Q ss_pred EEEeEeecCCc--cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeEee
Q 007511 283 FVSAVKNWGLK--SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSHLT 348 (601)
Q Consensus 283 lvSa~kg~G~~--~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~v~ 348 (601)
+.++.+.|+.. .+++++ ++.+.+|++++ +|+||+|||||+++|+|+.++.+|.+. ..++.+++++
T Consensus 3 ~~~~~~~~~~~~~~~l~~i-~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 81 (178)
T cd03247 3 INNVSFSYPEQEQQVLKNL-SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLN 81 (178)
T ss_pred EEEEEEEeCCCCccceEEE-EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEc
Confidence 34555666543 689999 99999998665 999999999999999999999999652 1234567777
Q ss_pred ecCC-CCCc-eeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHH
Q 007511 349 EAPV-PGTT-LGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHI 417 (601)
Q Consensus 349 qs~~-pgtT-~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l 417 (601)
|.+. ...| .+++ +..||+||+||+++|+++ +|++++| |+.....+
T Consensus 82 q~~~~~~~tv~~~i------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l 137 (178)
T cd03247 82 QRPYLFDTTLRNNL------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQL 137 (178)
T ss_pred cCCeeecccHHHhh------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHH
Confidence 6543 1111 1111 678999999999999999 9999999 78888899
Q ss_pred HHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 418 AGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 418 ~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
..+++... + +.+++.++ ..||+++.+++|++.
T Consensus 138 ~~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~~l~~g~i~ 175 (178)
T cd03247 138 LSLIFEVL-K-DKTLIWITHHLTGIEHMDKILFLENGKII 175 (178)
T ss_pred HHHHHHHc-C-CCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99998774 3 56666332 358999999999874
No 258
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.70 E-value=3.8e-17 Score=166.02 Aligned_cols=169 Identities=17% Similarity=0.159 Sum_probs=125.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcc--ccCCCCCcc-------c----ccc--ce
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDG-------E----EKN--IV 344 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~--~~~~~G~i~-------~----~~~--~i 344 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+ .+|..|.+. . .+. .+
T Consensus 8 l~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 8 LEIKNLHASVNENEILKGL-NLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred EEEEeEEEEeCCEEeeecc-eeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence 5566777778767799999 99999997655 999999999999999998 568888541 0 111 36
Q ss_pred eEeeecCC--CCCc-eeeeeeecc----------cc------chhhhhccCCCcC--cCCccC-CCCHHHHHHhcccccc
Q 007511 345 SHLTEAPV--PGTT-LGIVRVEGV----------LP------AQAKLFDTPGLLH--PNQITT-RLTREEQKLVNINKEL 402 (601)
Q Consensus 345 ~~v~qs~~--pgtT-~~~i~~~~~----------l~------~~~~llDtpGL~~--~~~~~~-~LSgGe~qrv~iaraL 402 (601)
++++|.+. +++| .+++.+... .. ...++++..|+.. .++.+. .||+||+||++||++|
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 166 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA 166 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHH
Confidence 77888764 6555 444322110 00 0135678888863 466676 5999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------Ee-ecCEEEeecceec
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VW-ASPYLPLHMGKTE 451 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~-ad~vl~l~~Gki~ 451 (601)
+|++++| |+.....+..+++....+ +.+++.++ .+ ||++++|++|++.
T Consensus 167 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 167 LLDSELAILDETDSGLDIDALKIIAEGINKLMTS-ENSIILITHYQRLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhhCCEEEEEeCCEEE
Confidence 9999999 888899999999987654 66776443 34 7999999999874
No 259
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.69 E-value=1.5e-17 Score=186.65 Aligned_cols=169 Identities=15% Similarity=0.255 Sum_probs=130.7
Q ss_pred EEEEEeEeecC-----------CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc---------
Q 007511 281 LHFVSAVKNWG-----------LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE--------- 339 (601)
Q Consensus 281 V~lvSa~kg~G-----------~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~--------- 339 (601)
+.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+ .+|.+..
T Consensus 276 l~~~~l~~~~~~~~~~~~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNI-SFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred ccccCcEEEeecCccccccccccceeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 44556666664 34689999 99999998654 99999999999999999985 7785410
Q ss_pred ------cccceeEeeecC---C-CCCc-eeeeeeecc-----ccc------hhhhhccCCCc-C-cCCccCCCCHHHHHH
Q 007511 340 ------EKNIVSHLTEAP---V-PGTT-LGIVRVEGV-----LPA------QAKLFDTPGLL-H-PNQITTRLTREEQKL 395 (601)
Q Consensus 340 ------~~~~i~~v~qs~---~-pgtT-~~~i~~~~~-----l~~------~~~llDtpGL~-~-~~~~~~~LSgGe~qr 395 (601)
.++.++|++|.+ . +..| .+++.+... ... ..++++.+|+. . .++.+..||||||||
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr 433 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQR 433 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHH
Confidence 134689999986 2 5555 666654211 111 14678899996 3 688899999999999
Q ss_pred hcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 396 VNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 396 v~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
|+||++| +|++++| |+..+..+..+++....+.+.+++. +..+||++++|++|++.
T Consensus 434 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 505 (529)
T PRK15134 434 IAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV 505 (529)
T ss_pred HHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999 9999999 8999999999999887654667663 34589999999999984
No 260
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.69 E-value=4.9e-17 Score=188.06 Aligned_cols=168 Identities=17% Similarity=0.179 Sum_probs=128.0
Q ss_pred eEEEEEeEeecC--CccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G--~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|+ .+.+++++ ++.+++|+ ++++|+||||||||+++|+|++.|++|.+ ...++.+
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~i-sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDV-SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred eEEEEEEEEEcCCCCccceeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 578888888884 35699999 99999886 55599999999999999999999999955 2456789
Q ss_pred eEeeecCC--CCCceeeeeeeccccc--hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~--~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
++++|++. ++|-++|+.+...... ..+.++..|+.+ .......|||||+||+++|||+ +|++
T Consensus 530 ~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i 609 (686)
T TIGR03797 530 GVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609 (686)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999997 6666888876432111 134455555432 1122457999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
++| |+.....+.+.++.. +.|++.++ ..||++++|++|++..
T Consensus 610 LiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~~~D~Iivl~~G~iv~ 664 (686)
T TIGR03797 610 LLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIRNADRIYVLDAGRVVQ 664 (686)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHHcCCEEEEEECCEEEE
Confidence 999 777777887777654 34666333 4689999999999853
No 261
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=3.7e-17 Score=166.32 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=126.4
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCc--------------ccc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGD--------------GEE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i--------------~~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+..+ +.|.+ ...
T Consensus 7 i~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (253)
T PRK14261 7 LSTKNLNLWYGEKHALYDI-TISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL 85 (253)
T ss_pred EEEeeeEEEECCeeeeeee-EEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence 4566777788877899999 99999997655 999999999999999998753 36743 112
Q ss_pred ccceeEeeecCC--CCCceeeeeeeccc----cc------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVL----PA------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l----~~------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.+++++|.+. +.+..+++.+.... .. ..++++.+|+.. .++.+..||+||+||+++|+++
T Consensus 86 ~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14261 86 RRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA 165 (253)
T ss_pred hceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh
Confidence 456899999875 54336766543211 00 134556666632 5677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++.... +.+++. +..+||++++|++|++.
T Consensus 166 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~ 227 (253)
T PRK14261 166 VNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLI 227 (253)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 9999999 88889999999988754 356653 34589999999999974
No 262
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.69 E-value=3.5e-17 Score=162.80 Aligned_cols=164 Identities=15% Similarity=0.199 Sum_probs=117.1
Q ss_pred EEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc----------------ccccce
Q 007511 283 FVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG----------------EEKNIV 344 (601)
Q Consensus 283 lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~----------------~~~~~i 344 (601)
+.|....|+ ...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+. ..++.+
T Consensus 3 ~~~~~~~~~~~~~il~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 3 VTNGYFSWGSGLATLSNI-NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeEEecCCCCcceeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 456777786 45689999 89999997665 999999999999999999999999541 113568
Q ss_pred eEeeecCC--CCCceeeeeeeccccc--hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~--~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
+|++|.+. +.+..+++.+...... ...+++..|+.. .++.+..||+||+||++||+++ +|++
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999875 4333676654322211 134555555532 2356789999999999999999 9999
Q ss_pred EEe-------ccchHHHHHH--HHHHHHHhcCceEEEEE------EeecCEEEeecc
Q 007511 407 YRI-------KAGHSIHIAG--LMRMDVEESSVESIYVT------VWASPYLPLHMG 448 (601)
Q Consensus 407 llL-------D~~~~~~l~~--lir~~~~~~g~tii~~~------~~ad~vl~l~~G 448 (601)
++| |+.....+.. +++..... +.+++.++ ..||+++.+++|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~~~-~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQDD-KRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHhcC-CCEEEEEeCChHHHhhCCEEEEecCC
Confidence 999 7777777776 55554433 56666322 357888888766
No 263
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.9e-17 Score=167.72 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=130.0
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------------ccc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------------EEK 341 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------------~~~ 341 (601)
+.+.++.+.||...+++++ ++.+.+|+++. +|+||+|||||+++|+|+..|++|.+. ..+
T Consensus 11 i~~~~~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~ 89 (257)
T PRK14246 11 FNISRLYLYINDKAILKDI-TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLR 89 (257)
T ss_pred eeeeeEEEecCCceeEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHh
Confidence 4566777888888899999 89999997655 999999999999999999999886320 124
Q ss_pred cceeEeeecCC--CCCc-eeeeeeecc---c-cc------hhhhhccCCCc-----CcCCccCCCCHHHHHHhcccccc-
Q 007511 342 NIVSHLTEAPV--PGTT-LGIVRVEGV---L-PA------QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT-~~~i~~~~~---l-~~------~~~llDtpGL~-----~~~~~~~~LSgGe~qrv~iaraL- 402 (601)
..+++++|.+. ++.| .+++.+... . .. ..++++.+|+. ..++.+..||+||+||++||+++
T Consensus 90 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 169 (257)
T PRK14246 90 KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA 169 (257)
T ss_pred cceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 56899999875 6666 776654311 1 11 14567788884 24677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |......+..+++.... +.+++.+ ..+||+++++++|++..
T Consensus 170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVE 232 (257)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 78888889999987643 4566633 35789999999999843
No 264
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.5e-17 Score=170.71 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=127.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.. |+.|.+. ..
T Consensus 40 l~i~~l~~~~~~~~il~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~ 118 (285)
T PRK14254 40 IEARDLNVFYGDEQALDDV-SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL 118 (285)
T ss_pred EEEEEEEEEECCEeeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhh
Confidence 5677888888777899999 99999997655 99999999999999999986 5778441 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeeccc---c-----chhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc--C
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVL---P-----AQAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL--K 403 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l---~-----~~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL--~ 403 (601)
++.+++++|.+. +.+..+++.+.... . ...++++.+|+.. .++.+..||+||+||++||++| +
T Consensus 119 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~ 198 (285)
T PRK14254 119 RRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPD 198 (285)
T ss_pred hccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 456899999864 54336665432111 1 1145677788742 5677899999999999999999 9
Q ss_pred CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEE-Eeecceecc
Q 007511 404 PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYL-PLHMGKTEN 452 (601)
Q Consensus 404 P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl-~l~~Gki~~ 452 (601)
|++++| |+.....+..+++....+ .+++.+ ..+||+++ ++++|++..
T Consensus 199 p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~--~tiii~tH~~~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 199 PEVILMDEPASALDPVATSKIEDLIEELAEE--YTVVIVTHNMQQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE
Confidence 999999 888899999999987653 456533 35789865 569999743
No 265
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.69 E-value=3.4e-17 Score=184.73 Aligned_cols=165 Identities=21% Similarity=0.151 Sum_probs=126.6
Q ss_pred EEEEEeEeecC-CccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCccc-cccceeEeeecCC--CCC
Q 007511 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGE-EKNIVSHLTEAPV--PGT 355 (601)
Q Consensus 281 V~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~-~~~~i~~v~qs~~--pgt 355 (601)
+.+.++.+.|+ .+.+++++ ++.+..|+++ ++|+||||||||+++|+|+.+|+.|.+.. ....++|++|.+. +..
T Consensus 5 i~~~nls~~~~~~~~il~~i-s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~ 83 (552)
T TIGR03719 5 YTMNRVSKVVPPKKEILKDI-SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTK 83 (552)
T ss_pred EEEeeEEEecCCCCeeecCc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCC
Confidence 45667788887 66799999 9999999755 59999999999999999999999997643 2356999999875 555
Q ss_pred c-eeeeeeeccc------------------cc---------------------------hhhhhccCCCcCcCCccCCCC
Q 007511 356 T-LGIVRVEGVL------------------PA---------------------------QAKLFDTPGLLHPNQITTRLT 389 (601)
Q Consensus 356 T-~~~i~~~~~l------------------~~---------------------------~~~llDtpGL~~~~~~~~~LS 389 (601)
| .+++.+.... .. ..++++.+|+...++.+..||
T Consensus 84 tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LS 163 (552)
T TIGR03719 84 TVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLS 163 (552)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcC
Confidence 5 6665432100 00 023566677754677899999
Q ss_pred HHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 390 REEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 390 gGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
|||+|||+||++| +|++++| |+.....+..+++.. +.+++. +..+||+++.|++|++
T Consensus 164 gGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 9999999999999 9999999 788888888887754 235553 3457899999999985
No 266
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=4.4e-17 Score=166.68 Aligned_cols=171 Identities=17% Similarity=0.197 Sum_probs=128.9
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC-----CCCc-------c-------c
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG-----RGGD-------G-------E 339 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~-----~G~i-------~-------~ 339 (601)
.+.+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+++ .|.+ . .
T Consensus 7 ~l~~~nl~~~~~~~~il~~i-s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGV-SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred eEEEeeEEEEeCCeeEeece-EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 46678888888877899999 99999997665 9999999999999999999875 5532 0 1
Q ss_pred cccceeEeeecCC--CCCceeeeeeecc---c-cc------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc
Q 007511 340 EKNIVSHLTEAPV--PGTTLGIVRVEGV---L-PA------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT~~~i~~~~~---l-~~------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL 402 (601)
.++.+++++|.+. +.+..+++.+... . .. ..++++..|+.. .++.+..||+||+||+++|++|
T Consensus 86 ~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 86 LRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 2345889988754 5333666543210 0 11 135667777632 4677899999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeec-----ceec
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHM-----GKTE 451 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~-----Gki~ 451 (601)
+|++++| |+.....+..+++....+.+.+++. +..+||++++|++ |++.
T Consensus 166 ~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 9999999 8888899999998875543566663 3458999999998 8873
No 267
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.69 E-value=1e-16 Score=186.04 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=126.6
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|+. +.+++++ ++.+++|+ ++++|+||||||||+++|+|+++|++|.+ ...++.+
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~i-sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENF-SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred eEEEEEEEEecCCCCCCcccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 5778888888864 5799999 99999886 56699999999999999999999999955 2357889
Q ss_pred eEeeecCC--CCCceeeeeeecc-ccc--hhhhhccCCC-----------cC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGV-LPA--QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~-l~~--~~~llDtpGL-----------~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++++|++. ++|-++|+.+... ... ..+.++..|+ .. .......|||||+||+++||++ +|+
T Consensus 556 ~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ 635 (710)
T TIGR03796 556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS 635 (710)
T ss_pred eEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 99999987 6666898876321 111 1223333333 22 2223467999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
+++| |+.....+.+.++. . +.|++.++ ..||++++|++|++..
T Consensus 636 iliLDEptS~LD~~te~~i~~~l~~---~-~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 636 ILILDEATSALDPETEKIIDDNLRR---R-GCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred EEEEECccccCCHHHHHHHHHHHHh---c-CCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 9999 67777777777764 2 56666433 4689999999999853
No 268
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2.5e-17 Score=169.40 Aligned_cols=169 Identities=16% Similarity=0.178 Sum_probs=126.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+ |+.|.+. ..
T Consensus 25 l~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 103 (271)
T PRK14238 25 FDTQNLNLWYGEDHALKNI-NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEEL 103 (271)
T ss_pred EEEeeeEEEECCcceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHH
Confidence 5667788888777899999 89999997655 99999999999999999987 5788541 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeecc---ccch-------hhhhccCCC----cC-cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGV---LPAQ-------AKLFDTPGL----LH-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~---l~~~-------~~llDtpGL----~~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.++|++|.+. +.+..+++.+... .... .++++..++ .. .++.+..||+||+||+++|++|
T Consensus 104 ~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~ 183 (271)
T PRK14238 104 RTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLA 183 (271)
T ss_pred hhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHH
Confidence 456899999865 4433666653211 1110 233445543 22 5677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++.... +.+++.+ ..+||++++|++|++..
T Consensus 184 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 246 (271)
T PRK14238 184 IEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246 (271)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 88889999999987754 4566633 35789999999999843
No 269
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.69 E-value=5.9e-17 Score=159.39 Aligned_cols=169 Identities=20% Similarity=0.239 Sum_probs=125.4
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------------cccccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-------------GEEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-------------~~~~~~i~~ 346 (601)
|.+.++...++.+.+|++| ++.++.|+-|+ +|+|||||||||++++|...|.+|.+ .+.++.||+
T Consensus 32 i~l~~v~v~r~gk~iL~~i-sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~ 110 (257)
T COG1119 32 IELKNVSVRRNGKKILGDL-SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGL 110 (257)
T ss_pred EEecceEEEECCEeecccc-ceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCc
Confidence 5677888889999999999 99999986555 99999999999999999999987733 456777888
Q ss_pred eeecC---C-CCCc-eeeeeeec-----cc----c-----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 347 LTEAP---V-PGTT-LGIVRVEG-----VL----P-----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 347 v~qs~---~-pgtT-~~~i~~~~-----~l----~-----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+..+- + +..+ ++.+.-.+ .+ . ...++++.+|+.+ .+++...||-||||||.||||| +|
T Consensus 111 vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P 190 (257)
T COG1119 111 VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDP 190 (257)
T ss_pred cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCC
Confidence 74321 1 4444 33332211 01 0 1257899999987 8999999999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHh-cCceEEEEEEee-------cCEEEeeccee
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEE-SSVESIYVTVWA-------SPYLPLHMGKT 450 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~-~g~tii~~~~~a-------d~vl~l~~Gki 450 (601)
++++| |...+..+.+.+...... .+.++++++.++ ++.+.+.+|++
T Consensus 191 ~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v 251 (257)
T COG1119 191 ELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEV 251 (257)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCce
Confidence 99999 677777777777766543 355666665544 45566666665
No 270
>PRK13409 putative ATPase RIL; Provisional
Probab=99.68 E-value=3.1e-17 Score=185.43 Aligned_cols=164 Identities=16% Similarity=0.153 Sum_probs=127.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCc-
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTT- 356 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT- 356 (601)
+.+.++.+.|+.. .++.+ ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+... ..++|++|... +..|
T Consensus 341 l~~~~ls~~~~~~-~l~~~-s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv 417 (590)
T PRK13409 341 VEYPDLTKKLGDF-SLEVE-GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTV 417 (590)
T ss_pred EEEcceEEEECCE-EEEec-ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcH
Confidence 4455666777654 36777 78888897655 99999999999999999999999977433 46899999864 5555
Q ss_pred eeeeeeecc-cc---chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHH
Q 007511 357 LGIVRVEGV-LP---AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMR 422 (601)
Q Consensus 357 ~~~i~~~~~-l~---~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir 422 (601)
.+++.+... .. ...++++.+||.. .++.+..|||||+|||+||++| +|++|+| |+.++..+..+++
T Consensus 418 ~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~ 497 (590)
T PRK13409 418 EDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIR 497 (590)
T ss_pred HHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 565543211 11 1256788899976 7889999999999999999999 9999999 8899999999999
Q ss_pred HHHHhcCceEEE-------EEEeecCEEEeec
Q 007511 423 MDVEESSVESIY-------VTVWASPYLPLHM 447 (601)
Q Consensus 423 ~~~~~~g~tii~-------~~~~ad~vl~l~~ 447 (601)
....+.+.+++. +..+||++++++.
T Consensus 498 ~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 498 RIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 987765666663 3457899999974
No 271
>PRK12289 GTPase RsgA; Reviewed
Probab=99.68 E-value=2.2e-16 Score=167.17 Aligned_cols=188 Identities=23% Similarity=0.354 Sum_probs=122.0
Q ss_pred CceeccccccccccCccc----ccc------------cccCCCCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccH
Q 007511 152 KPVVCARCHALRHYGKVK----DVT------------VENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPR 215 (601)
Q Consensus 152 ~~~~C~RC~~l~hy~~~~----~~~------------~~~~lP~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~ 215 (601)
..+.|.+|.+++|++... ++. ++.++|+..... ..++..+|+|++|+|+.++..+ ..
T Consensus 35 ~~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR~~~L~------R~~~aNvD~vLlV~d~~~p~~~-~~ 107 (352)
T PRK12289 35 SLLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIAEVLPRKTELD------RPPVANADQILLVFALAEPPLD-PW 107 (352)
T ss_pred eEEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEEEEecccccee------chhhhcCCEEEEEEECCCCCCC-HH
Confidence 358899999999887531 111 112234433221 1235579999999999876533 23
Q ss_pred HHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccc
Q 007511 216 KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSL 295 (601)
Q Consensus 216 ~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~L 295 (601)
.+.+++..+ +..+ .++++|+||+||+.. ..+..|...+ +..| ..++.+|+..+.|...|
T Consensus 108 ~LdR~L~~a-------~~~~-----ip~ILVlNK~DLv~~----~~~~~~~~~~-~~~g----~~v~~iSA~tg~GI~eL 166 (352)
T PRK12289 108 QLSRFLVKA-------ESTG-----LEIVLCLNKADLVSP----TEQQQWQDRL-QQWG----YQPLFISVETGIGLEAL 166 (352)
T ss_pred HHHHHHHHH-------HHCC-----CCEEEEEEchhcCCh----HHHHHHHHHH-HhcC----CeEEEEEcCCCCCHHHH
Confidence 567776543 1122 379999999999843 3456775543 4445 25889999999999888
Q ss_pred cchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhcc
Q 007511 296 IDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDT 375 (601)
Q Consensus 296 L~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDt 375 (601)
++.+. ...++++|++|||||||||.|++......|.+.....+. -+||.....+. +.+...++||
T Consensus 167 ~~~L~-----~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rG--------rHTT~~~~l~~--l~~g~~liDT 231 (352)
T PRK12289 167 LEQLR-----NKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRG--------RHTTRHVELFE--LPNGGLLADT 231 (352)
T ss_pred hhhhc-----cceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCC--------CCcCceeEEEE--CCCCcEEEeC
Confidence 88772 224677999999999999999987766555432211111 23665544443 3333589999
Q ss_pred CCCcCcC
Q 007511 376 PGLLHPN 382 (601)
Q Consensus 376 pGL~~~~ 382 (601)
||+....
T Consensus 232 PG~~~~~ 238 (352)
T PRK12289 232 PGFNQPD 238 (352)
T ss_pred CCccccc
Confidence 9997644
No 272
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.68 E-value=1.5e-16 Score=180.96 Aligned_cols=170 Identities=18% Similarity=0.223 Sum_probs=128.7
Q ss_pred eEEEEEeEeecCC-ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------ccccccee
Q 007511 280 KLHFVSAVKNWGL-KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G~-~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~ 345 (601)
++.+.++...|+. ..+++++ ++.+++|+ ++++|+||+|||||+++|+|+++|++|.+ ...++.++
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i-~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNI-NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred eEEEEEEEEEeCCCCceeece-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 4777777777754 4699999 99999986 55599999999999999999999999954 23467899
Q ss_pred EeeecCC--CCCceeeeeeeccccc--hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEE
Q 007511 346 HLTEAPV--PGTTLGIVRVEGVLPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTY 407 (601)
Q Consensus 346 ~v~qs~~--pgtT~~~i~~~~~l~~--~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~ll 407 (601)
+++|.+. ++|-++|+.+...... ..++++..|+.+ .......|||||+||+++||+| +|+++
T Consensus 419 ~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998 7766888876432111 133444444432 1223456999999999999999 99999
Q ss_pred Ee-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 408 RI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 408 lL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
+| |+.....+.+.++.... +.|++.++ ..||++++|++|++..
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIVEADTILVLHRGQAVE 554 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 99 78888888888876543 35665333 4689999999999853
No 273
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.68 E-value=1.1e-16 Score=163.44 Aligned_cols=170 Identities=15% Similarity=0.125 Sum_probs=123.6
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i 344 (601)
.+.+.++...|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.++.+|.+. ..++.+
T Consensus 19 ~i~~~~l~~~~~~~~~~il~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i 97 (257)
T cd03288 19 EIKIHDLCVRYENNLKPVLKHV-KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred eEEEEEEEEEeCCCCCcceeEE-EEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence 4667778888865 4699999 99999997655 999999999999999999999999541 224568
Q ss_pred eEeeecCC--CCCceeeeeeeccccc--hh---------hhhccC--CCcC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA--QA---------KLFDTP--GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~--~~---------~llDtp--GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
++++|.+. +++..+++........ .. .+++.+ |+.. .+.....||+||+||+++|++| +|++
T Consensus 98 ~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 177 (257)
T cd03288 98 SIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI 177 (257)
T ss_pred EEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999875 4433555543211100 11 223332 4433 3445678999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
++| |+.....+..+++... + +.+++.++ ..||++++|++|++..
T Consensus 178 lllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~dri~~l~~G~i~~ 234 (257)
T cd03288 178 LIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVSTILDADLVLVLSRGILVE 234 (257)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHHHHhCCEEEEEECCEEEE
Confidence 999 7888888888887653 3 56666322 2489999999999843
No 274
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.68 E-value=3.6e-17 Score=187.23 Aligned_cols=174 Identities=13% Similarity=0.087 Sum_probs=132.0
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCccccc-cceeEeeecC--C-CCC
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAP--V-PGT 355 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~-~~i~~v~qs~--~-pgt 355 (601)
+.+.++.+.|+...+++++ ++.+.+|++ +++|+|||||||||++|+|+.+|++|.+.... -.++|++|.. . +..
T Consensus 320 l~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~ 398 (635)
T PRK11147 320 FEMENVNYQIDGKQLVKDF-SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEK 398 (635)
T ss_pred EEEeeeEEEECCeEEEcCc-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCC
Confidence 4567788889888899999 999999975 55999999999999999999999999774321 2589999864 2 665
Q ss_pred c-eeeeeeecc-c--cc----hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHH
Q 007511 356 T-LGIVRVEGV-L--PA----QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIH 416 (601)
Q Consensus 356 T-~~~i~~~~~-l--~~----~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~ 416 (601)
| .+++.+... . .. ...+++.+|+.. .++.+..|||||+|||+||++| +|++++| |+.....
T Consensus 399 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~ 478 (635)
T PRK11147 399 TVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLEL 478 (635)
T ss_pred CHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 6 666544211 1 11 245678888853 6788999999999999999999 9999999 7777777
Q ss_pred HHHHHHHHHHhcCceEEE-------EEEeecCEEEee-cceecchHHHHHH
Q 007511 417 IAGLMRMDVEESSVESIY-------VTVWASPYLPLH-MGKTENACTMVEK 459 (601)
Q Consensus 417 l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~-~Gki~~a~e~~~~ 459 (601)
+..+++.. +.+++. +..+||+++.++ +|++..+...|..
T Consensus 479 l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 479 LEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 77777654 235553 335899999997 8998665544443
No 275
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=7.6e-17 Score=154.44 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=100.0
Q ss_pred EEEeEeecCCc--cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc------------cccceeEe
Q 007511 283 FVSAVKNWGLK--SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE------------EKNIVSHL 347 (601)
Q Consensus 283 lvSa~kg~G~~--~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~------------~~~~i~~v 347 (601)
+.++.+.|+.. .+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|..|.+.. .++.++++
T Consensus 3 ~~~l~~~~~~~~~~~l~~i-~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (171)
T cd03228 3 FKNVSFSYPGRPKPVLKDV-SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYV 81 (171)
T ss_pred EEEEEEEcCCCCcccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEE
Confidence 45666677654 689999 89999997666 9999999999999999999999985421 12234555
Q ss_pred eecCCCCCceeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHH
Q 007511 348 TEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIA 418 (601)
Q Consensus 348 ~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~ 418 (601)
+|.+.. +. ..+.|-. ||+||+||+++|+++ +|++++| |+.....+.
T Consensus 82 ~~~~~~--------~~------~t~~e~l-----------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~ 136 (171)
T cd03228 82 PQDPFL--------FS------GTIRENI-----------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL 136 (171)
T ss_pred cCCchh--------cc------chHHHHh-----------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH
Confidence 444310 00 0011110 999999999999999 9999999 788889999
Q ss_pred HHHHHHHHhcCceEEEEE------EeecCEEEeecce
Q 007511 419 GLMRMDVEESSVESIYVT------VWASPYLPLHMGK 449 (601)
Q Consensus 419 ~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gk 449 (601)
.+++... + +.+++.++ ..||+++.|++|+
T Consensus 137 ~~l~~~~-~-~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 137 EALRALA-K-GKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred HHHHHhc-C-CCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9998774 3 45665322 2388888888764
No 276
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.68 E-value=3.1e-16 Score=147.76 Aligned_cols=141 Identities=29% Similarity=0.435 Sum_probs=99.7
Q ss_pred cEEEEEEeCCCCCCCccHHHHH-HHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCC
Q 007511 198 SVVLMVVDAADFDGSFPRKVAK-MVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGIS 276 (601)
Q Consensus 198 dvVv~VVDa~Df~~s~~~~i~~-~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~ 276 (601)
|+|++|+|++++.++.+..+.+ .+.. . + .|+++|+||+||+++ ..+..|+..+....
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~----------~----~-~p~IiVlNK~Dl~~~----~~~~~~~~~~~~~~--- 58 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE----------K----G-KKLILVLNKADLVPK----EVLRKWLAYLRHSY--- 58 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc----------C----C-CCEEEEEechhcCCH----HHHHHHHHHHHhhC---
Confidence 7899999999998887776662 3221 1 2 389999999999863 34667775543222
Q ss_pred ccceEEEEEeEeecCCccccchhhhh-------------cccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccc
Q 007511 277 KITKLHFVSAVKNWGLKSLIDDVVDL-------------AGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI 343 (601)
Q Consensus 277 ~~~~V~lvSa~kg~G~~~LL~~I~~l-------------~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~ 343 (601)
...++.+|+.++.|...+.+.+... ......++++|.+|+|||||+|+|++....
T Consensus 59 -~~~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~----------- 126 (155)
T cd01849 59 -PTIPFKISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKL----------- 126 (155)
T ss_pred -CceEEEEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccc-----------
Confidence 2568899999999998888766321 122336778999999999999999975421
Q ss_pred eeEeeecCCCCCceeeeeeeccccchhhhhccCCC
Q 007511 344 VSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (601)
Q Consensus 344 i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL 378 (601)
..+..|++|.+...+. +.....++||||+
T Consensus 127 ----~~~~~~~~t~~~~~~~--~~~~~~liDtPG~ 155 (155)
T cd01849 127 ----KVGNVPGTTTSQQEVK--LDNKIKLLDTPGI 155 (155)
T ss_pred ----cccCCCCcccceEEEE--ecCCEEEEECCCC
Confidence 1344578886665543 3345689999996
No 277
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=7.9e-17 Score=180.92 Aligned_cols=166 Identities=15% Similarity=0.138 Sum_probs=129.4
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcccc-ccceeEeeecCC----CC
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPV----PG 354 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~-~~~i~~v~qs~~----pg 354 (601)
+.+.++.+.|+.+.+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+... +..++|++|.+. +.
T Consensus 320 l~~~~l~~~~~~~~~l~~i-s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~ 398 (530)
T PRK15064 320 LEVENLTKGFDNGPLFKNL-NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFEND 398 (530)
T ss_pred EEEEeeEEeeCCceeecCc-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCC
Confidence 5677888888877899999 99999997655 99999999999999999999999977432 356899999752 34
Q ss_pred Cc-eeeeeeecc-cc---chhhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHH
Q 007511 355 TT-LGIVRVEGV-LP---AQAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIA 418 (601)
Q Consensus 355 tT-~~~i~~~~~-l~---~~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~ 418 (601)
+| .+++..... .. ....+++.+|+. . .++.+..|||||+||++||+++ +|++++| |+.....+.
T Consensus 399 ~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 478 (530)
T PRK15064 399 LTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLN 478 (530)
T ss_pred CcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 55 555432110 01 124678889984 3 6888999999999999999999 9999999 788888888
Q ss_pred HHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 419 GLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 419 ~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
.+++.. . + +++. +..+||++++|++|++.
T Consensus 479 ~~l~~~--~-~-tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 479 MALEKY--E-G-TLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHHC--C-C-EEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 888764 2 3 5653 33579999999999874
No 278
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=5.7e-17 Score=167.06 Aligned_cols=164 Identities=18% Similarity=0.132 Sum_probs=122.8
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc--------------c
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG--------------E 339 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~--------------~ 339 (601)
-+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+..+ ..|.+. .
T Consensus 20 ~l~~~nl~~~~~~~~~l~~v-s~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~ 98 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDV-HLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98 (274)
T ss_pred eEEEeeEEEEeCCeEEEeee-eeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHH
Confidence 35667888888877899999 99999997665 999999999999999999753 467431 1
Q ss_pred cccceeEeeecCC--CCCceeeeeeeccc---cc-----hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc--
Q 007511 340 EKNIVSHLTEAPV--PGTTLGIVRVEGVL---PA-----QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT~~~i~~~~~l---~~-----~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
.++.++|++|.+. +.+..+++.+.... .. ..++++..|+. . .++.+..||+||+||++||++|
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~ 178 (274)
T PRK14265 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM 178 (274)
T ss_pred HhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh
Confidence 2457899999865 44336665442111 00 13456666763 2 5677899999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEee
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLH 446 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~ 446 (601)
+|++++| |+..+..+..+++.... +.+++.+ ..+||++++|+
T Consensus 179 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~ 234 (274)
T PRK14265 179 KPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFN 234 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999 88899999999988753 4566633 35889999997
No 279
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.67 E-value=2.2e-16 Score=178.82 Aligned_cols=171 Identities=15% Similarity=0.241 Sum_probs=129.4
Q ss_pred ceEEEEEeEeecC-CccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 279 TKLHFVSAVKNWG-LKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 279 ~~V~lvSa~kg~G-~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+|.+.++..+|+ .+.+++++ ++.+++|+. ++||+||||||||+|.|++++.|.+|.+ ...++.+
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~i-s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDI-SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCc-eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhc
Confidence 4588999999998 57899999 998988864 5699999999999999999999999955 3457889
Q ss_pred eEeeecCC--CCCceeeeeeeccccch------------h-hhhccC-CCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPAQ------------A-KLFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~~------------~-~llDtp-GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++++|++. .+|-.+|+.+....... . .+...| |+.. -......||||||||++||||+ +|+
T Consensus 406 ~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred cEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999997 55558998875321111 1 122333 4443 2334567999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEEE------eecCEEEeecceecc
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVTV------WASPYLPLHMGKTEN 452 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~~------~ad~vl~l~~Gki~~ 452 (601)
+++| |..+...+...++... + +.|++.+.+ .||+++++++|++.+
T Consensus 486 ILILDEaTSalD~~tE~~I~~~l~~l~-~-~rT~iiIaHRlsti~~aD~IiVl~~G~i~e 543 (567)
T COG1132 486 ILILDEATSALDTETEALIQDALKKLL-K-GRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543 (567)
T ss_pred EEEEeccccccCHHhHHHHHHHHHHHh-c-CCEEEEEeccHhHHHhCCEEEEEECCEEEE
Confidence 9999 7777778888887554 3 345543332 389999999999733
No 280
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=6.6e-17 Score=164.36 Aligned_cols=169 Identities=18% Similarity=0.171 Sum_probs=125.5
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc--C---CCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD--A---GRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~--~---~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.. | ++|.+. ..
T Consensus 6 l~~~~l~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14255 6 ITSSDVHLFYGKFEALKGI-DLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL 84 (252)
T ss_pred EEEEeEEEEECCeeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence 5567778888877899999 89999997555 99999999999999999864 4 367431 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeeccc---cc-------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVL---PA-------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l---~~-------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.+++++|.+. +.+..+++.+.... .. ..+.++..|+. . .++.+..||+||+||++||++|
T Consensus 85 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~ 164 (252)
T PRK14255 85 RKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA 164 (252)
T ss_pred cCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence 356899999865 53336665532111 00 12345666653 2 5677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+..+++....+ .+++.+ ..+||+++.|++|++..
T Consensus 165 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14255 165 VKPDVILLDEPTSALDPISSTQIENMLLELRDQ--YTIILVTHSMHQASRISDKTAFFLTGNLIE 227 (252)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhC--CEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999 788889999999887543 456533 35799999999999854
No 281
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.67 E-value=6.1e-17 Score=180.15 Aligned_cols=172 Identities=14% Similarity=0.191 Sum_probs=129.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-CCCCcc-------------cccccee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-GRGGDG-------------EEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-~~G~i~-------------~~~~~i~ 345 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.++ ++|.+. ..++.++
T Consensus 261 l~~~~l~~~~~~~~il~~v-sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 339 (490)
T PRK10938 261 IVLNNGVVSYNDRPILHNL-SWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG 339 (490)
T ss_pred EEEeceEEEECCeeEEeec-eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhce
Confidence 5677888888877899999 99999997665 999999999999999998765 467431 1235689
Q ss_pred EeeecCC--C--CCcee-eeeeec-----c---ccc-----hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--C
Q 007511 346 HLTEAPV--P--GTTLG-IVRVEG-----V---LPA-----QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--K 403 (601)
Q Consensus 346 ~v~qs~~--p--gtT~~-~i~~~~-----~---l~~-----~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~ 403 (601)
+++|.+. + .++.. ++.... . ... ..++++.+|+.. .++.+..|||||+|||++|++| +
T Consensus 340 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 419 (490)
T PRK10938 340 YVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKH 419 (490)
T ss_pred EECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcC
Confidence 9998753 2 23432 221100 0 011 246788899974 6788999999999999999999 9
Q ss_pred CCEEEe-------ccchHHHHHHHHHHHHHhcCceEE-------EEEE-eecCEEEeecceecch
Q 007511 404 PRTYRI-------KAGHSIHIAGLMRMDVEESSVESI-------YVTV-WASPYLPLHMGKTENA 453 (601)
Q Consensus 404 P~lllL-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~-~ad~vl~l~~Gki~~a 453 (601)
|++++| |+..+..+..+++....+++.+++ ++.. +||++++|++|++..+
T Consensus 420 p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 420 PTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999 899999999999988766444455 2334 5899999999987543
No 282
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.4e-16 Score=163.37 Aligned_cols=171 Identities=18% Similarity=0.166 Sum_probs=129.3
Q ss_pred ceEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc--------------
Q 007511 279 TKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG-------------- 338 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~-------------- 338 (601)
..+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+..| ++|.+.
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNI-NMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred ceEEEEEEEEEECCeeeeeee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 356778888899877899999 99999997655 999999999999999999875 566431
Q ss_pred --ccccceeEeeecCC--CCCceeeeeeecccc----------chhhhhccCCCc----C-cCCccCCCCHHHHHHhccc
Q 007511 339 --EEKNIVSHLTEAPV--PGTTLGIVRVEGVLP----------AQAKLFDTPGLL----H-PNQITTRLTREEQKLVNIN 399 (601)
Q Consensus 339 --~~~~~i~~v~qs~~--pgtT~~~i~~~~~l~----------~~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~ia 399 (601)
..++.+++++|.+. +++..+++.+..... ....+++..|+. . .++.+..||+||+||++||
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 173 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIA 173 (265)
T ss_pred HHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHH
Confidence 12456899999865 553366665421110 113456666663 2 4677899999999999999
Q ss_pred ccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 400 KEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 400 raL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
++| +|++++| |+.....+..+++.... +.+++.++ .+||++++|++|++..
T Consensus 174 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 174 RALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999 9999999 78888999999987753 45666443 5899999999999843
No 283
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=6.4e-17 Score=165.76 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=121.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.. ++.|.+. ..
T Consensus 11 l~i~~v~~~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 11 LRTENLNVYYGSFLAVKNV-WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EEEeeeEEEECCEEEeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence 5567888888877899999 99999997655 99999999999999999875 3667431 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeecccc---c-----hhhhhccCCCc-----CcCCccCCCCHHHHHHhcccccc--C
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVLP---A-----QAKLFDTPGLL-----HPNQITTRLTREEQKLVNINKEL--K 403 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l~---~-----~~~llDtpGL~-----~~~~~~~~LSgGe~qrv~iaraL--~ 403 (601)
++.+++++|.+. +.+..+++.+..... . ...+++..|+. ..++.+..||+||+||++||++| +
T Consensus 90 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 169 (264)
T PRK14243 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQ 169 (264)
T ss_pred hhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 456899999865 443366655421111 0 12345666763 14677889999999999999999 9
Q ss_pred CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEee
Q 007511 404 PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLH 446 (601)
Q Consensus 404 P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~ 446 (601)
|++++| |+..+..+..+++.... +.+++. +..+||++++|+
T Consensus 170 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~ 224 (264)
T PRK14243 170 PEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFN 224 (264)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 999999 78888999999988754 346663 345889999998
No 284
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=2.1e-17 Score=159.06 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=121.4
Q ss_pred ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEeeecCC----CCC
Q 007511 293 KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHLTEAPV----PGT 355 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v~qs~~----pgt 355 (601)
+.+++.+ ++.+..|+ +.++|.||||||||+|+|+|...+++|.+ ......++.|||.|. |.+
T Consensus 19 k~~l~~~-sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 19 KRALNGL-SLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHhcC-ceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4678888 88888886 55699999999999999999999999955 123345788999997 666
Q ss_pred c-eeeeeeeccccc---------------hhhhhccC--CCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 356 T-LGIVRVEGVLPA---------------QAKLFDTP--GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 356 T-~~~i~~~~~l~~---------------~~~llDtp--GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
| .+|+.+...... ..+.+... |+.+ .+..+..|||||||-++++.|. .|++++|
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 7 566554321100 02233444 4444 6778999999999999999887 8899998
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
||..+.+++.+-.....+.+.|.+- +..|.+|.+++|.|++
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~I 227 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKI 227 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeE
Confidence 9999999999999888877777663 3468999999999997
No 285
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.67 E-value=1.3e-16 Score=184.77 Aligned_cols=170 Identities=15% Similarity=0.212 Sum_probs=128.8
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.|.+.++..+|+. +.+++++ ++.+++|+ ++++|+||+|||||+++|+|+++|.+|.+ ...++.+
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i-~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNV-SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred eEEEEEEEEEeCCCCccceeee-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 4778888888853 4699999 99999886 55599999999999999999999999954 2456789
Q ss_pred eEeeecCC--CCCceeeeeeeccccch---hhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPAQ---AKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~~---~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++++|++. ++|-++|+.+...-... .+.++..|+.+ .......|||||+||+++||++ +|+
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999988 66558888764221111 23344444321 1223457999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
+++| |+.....+...++.... +.|++.++ ..||++++|++|++..
T Consensus 622 iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~~~~D~iivl~~G~i~e 679 (694)
T TIGR03375 622 ILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLLDLVDRIIVMDNGRIVA 679 (694)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhCCEEEEEeCCEEEe
Confidence 9999 77788888888876543 45666433 4789999999999853
No 286
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.67 E-value=7.5e-17 Score=182.03 Aligned_cols=166 Identities=16% Similarity=0.158 Sum_probs=129.5
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccc-cceeEeeecC--C-CCC
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAP--V-PGT 355 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~-~~i~~v~qs~--~-pgt 355 (601)
+.+.++.+.|+.+.+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+.... ..++|++|.. . +..
T Consensus 325 l~~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~ 403 (556)
T PRK11819 325 IEAENLSKSFGDRLLIDDL-SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNK 403 (556)
T ss_pred EEEEeEEEEECCeeeecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCC
Confidence 5667888888888899999 99999997655 999999999999999999999999774321 2589999975 2 555
Q ss_pred c-eeeeeeeccc---cc----hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHH
Q 007511 356 T-LGIVRVEGVL---PA----QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIH 416 (601)
Q Consensus 356 T-~~~i~~~~~l---~~----~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~ 416 (601)
| .+++.+.... .. ...+++.+|+.. .++.+..|||||+||++||+++ +|++++| |+.....
T Consensus 404 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 483 (556)
T PRK11819 404 TVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRA 483 (556)
T ss_pred CHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 5 6665442111 11 135788899963 5888999999999999999999 9999999 7888888
Q ss_pred HHHHHHHHHHhcCceEEE-------EEEeecCEEEeec-ceec
Q 007511 417 IAGLMRMDVEESSVESIY-------VTVWASPYLPLHM-GKTE 451 (601)
Q Consensus 417 l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~-Gki~ 451 (601)
+..+++.. . + +++. +..+||+++++++ |++.
T Consensus 484 l~~~l~~~--~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 484 LEEALLEF--P-G-CAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred HHHHHHhC--C-C-eEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 88888865 2 3 4553 3357999999986 6664
No 287
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.67 E-value=8.2e-17 Score=181.59 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=129.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccc-cceeEeeecC--C-CCC
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAP--V-PGT 355 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~-~~i~~v~qs~--~-pgt 355 (601)
+.+.++.+.|+.+.+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+.... ..++|++|.+ . +..
T Consensus 323 l~~~~l~~~~~~~~~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~ 401 (552)
T TIGR03719 323 IEAENLSKGFGDKLLIDDL-SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNK 401 (552)
T ss_pred EEEeeEEEEECCeeeeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCC
Confidence 5566778888877899999 99999997655 999999999999999999999999774321 2589999974 2 555
Q ss_pred c-eeeeeeecc---ccc----hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHH
Q 007511 356 T-LGIVRVEGV---LPA----QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIH 416 (601)
Q Consensus 356 T-~~~i~~~~~---l~~----~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~ 416 (601)
| .+++.+... ... ...+++.+|+.. .++.+..|||||+|||++|++| +|++++| |+.....
T Consensus 402 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 481 (552)
T TIGR03719 402 TVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA 481 (552)
T ss_pred cHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Confidence 5 666654321 111 136789999963 5788999999999999999999 9999999 7888899
Q ss_pred HHHHHHHHHHhcCceEEE-------EEEeecCEEEeec-ceec
Q 007511 417 IAGLMRMDVEESSVESIY-------VTVWASPYLPLHM-GKTE 451 (601)
Q Consensus 417 l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~-Gki~ 451 (601)
+..+++... + +++. +..+||++++|++ |++.
T Consensus 482 l~~~l~~~~---~-~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 482 LEEALLEFA---G-CAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred HHHHHHHCC---C-eEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 998888752 3 4553 3357899999986 5654
No 288
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.67 E-value=1.2e-16 Score=161.99 Aligned_cols=169 Identities=18% Similarity=0.143 Sum_probs=120.5
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccc--cCCCCCcc------------c-cccce
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDG------------E-EKNIV 344 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~--~~~~G~i~------------~-~~~~i 344 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+. +|++|.+. . .+..+
T Consensus 2 i~~~nl~~~~~~~~~l~~i-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGL-NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeCCeeeeecc-eeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 3456777788777899999 89999997655 9999999999999999995 68888541 0 12458
Q ss_pred eEeeecCC--CCCc-eee-------eeeec---ccc--c----hhhhhccCCCcC--cCCccC-CCCHHHHHHhcccccc
Q 007511 345 SHLTEAPV--PGTT-LGI-------VRVEG---VLP--A----QAKLFDTPGLLH--PNQITT-RLTREEQKLVNINKEL 402 (601)
Q Consensus 345 ~~v~qs~~--pgtT-~~~-------i~~~~---~l~--~----~~~llDtpGL~~--~~~~~~-~LSgGe~qrv~iaraL 402 (601)
++++|.+. +..| ..+ +.... .+. . ..++++.+|+.. .++.+. .||+||+||++||+++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 88888764 3322 111 10000 001 0 134666677742 444554 7999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEEE-------e-ecCEEEeecceec
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVTV-------W-ASPYLPLHMGKTE 451 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~~-------~-ad~vl~l~~Gki~ 451 (601)
+|++++| |+.....+..+++..... +.+++.++. + +|+++.+++|++.
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~ 225 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 225 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhhhCCEEEEEECCeEE
Confidence 9999999 788888999998877654 566664432 3 7999999999874
No 289
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.5e-16 Score=173.22 Aligned_cols=169 Identities=18% Similarity=0.221 Sum_probs=126.6
Q ss_pred EEEEEeEeecCCc-cccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccceeE
Q 007511 281 LHFVSAVKNWGLK-SLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~-~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~ 346 (601)
+...+....|... .+++++ ++.+.+|+ +++||+||||||||++.|+|+.+|+.|++ ...++++++
T Consensus 321 i~~~~l~~~y~~g~~~l~~l-~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDL-NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeecceEEecCCCCcccCCc-eeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 3333666666543 889999 89999886 66699999999999999999999999965 234678999
Q ss_pred eeecCC--CCCceeeeeeeccccch---hhhhccCCCcC-------cCCcc----CCCCHHHHHHhcccccc--CCCEEE
Q 007511 347 LTEAPV--PGTTLGIVRVEGVLPAQ---AKLFDTPGLLH-------PNQIT----TRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 347 v~qs~~--pgtT~~~i~~~~~l~~~---~~llDtpGL~~-------~~~~~----~~LSgGe~qrv~iaraL--~P~lll 408 (601)
++|+++ ++|-++|+.+...-... .+++|..|+.+ .+..+ ..|||||+|||++|||+ ++++++
T Consensus 400 v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l 479 (559)
T COG4988 400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL 479 (559)
T ss_pred eCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 999998 78779998775321111 33444444432 13333 44999999999999999 778888
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEE------EEeecCEEEeecceecc
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYV------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~------~~~ad~vl~l~~Gki~~ 452 (601)
+ |......+.+.+....++ .|++.+ ..-+|++++|++|++..
T Consensus 480 lDEpTA~LD~etE~~i~~~l~~l~~~--ktvl~itHrl~~~~~~D~I~vld~G~l~~ 534 (559)
T COG4988 480 LDEPTAHLDAETEQIILQALQELAKQ--KTVLVITHRLEDAADADRIVVLDNGRLVE 534 (559)
T ss_pred ecCCccCCCHhHHHHHHHHHHHHHhC--CeEEEEEcChHHHhcCCEEEEecCCceec
Confidence 8 777788888888887765 455533 34789999999999844
No 290
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=1.4e-16 Score=155.83 Aligned_cols=151 Identities=16% Similarity=0.105 Sum_probs=111.8
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcccc--------ccceeEeeecCC
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE--------KNIVSHLTEAPV 352 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~--------~~~i~~v~qs~~ 352 (601)
.+.++.+.|+...+++ + ++.+.+|++++ +|+||+|||||+++|+|+.+|++|.+... .+.++++++...
T Consensus 3 ~~~~l~~~~~~~~l~~-v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (195)
T PRK13541 3 SLHQLQFNIEQKNLFD-L-SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG 80 (195)
T ss_pred EEEEeeEEECCcEEEE-E-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence 3456667776666666 7 89999997655 99999999999999999999999965211 234678877653
Q ss_pred --CCCc-eeeeeeecccc----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHH
Q 007511 353 --PGTT-LGIVRVEGVLP----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSI 415 (601)
Q Consensus 353 --pgtT-~~~i~~~~~l~----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~ 415 (601)
+..| .+++.+..... ....+++..|+.. .++.+..||+||+||+++|+++ +|++++| |+....
T Consensus 81 ~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~ 160 (195)
T PRK13541 81 LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRD 160 (195)
T ss_pred CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 4445 66665421111 1245678888865 6778899999999999999999 9999999 788888
Q ss_pred HHHHHHHHHHHhcCceEEEE
Q 007511 416 HIAGLMRMDVEESSVESIYV 435 (601)
Q Consensus 416 ~l~~lir~~~~~~g~tii~~ 435 (601)
.+..+++....+ +.+++.+
T Consensus 161 ~l~~~l~~~~~~-~~tiii~ 179 (195)
T PRK13541 161 LLNNLIVMKANS-GGIVLLS 179 (195)
T ss_pred HHHHHHHHHHhC-CCEEEEE
Confidence 999998765443 5665543
No 291
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.67 E-value=1.7e-16 Score=178.89 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=127.4
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|+. ..+++++ ++.+++|+. +++|+||+|||||+++|+|+++|.+|.+ ...++.+
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~-~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGI-SFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred eEEEEEEEEEcCCCCccccccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 4778888888853 5789999 999999965 5599999999999999999999999954 1245679
Q ss_pred eEeeecCC--CCCceeeeeeecc-ccch-----------hhhhccC--CCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGV-LPAQ-----------AKLFDTP--GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~-l~~~-----------~~llDtp--GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++++|.+. +++-++|+..... .... .++++.+ |+.. .+.....|||||+||+++||++ +|+
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474 (544)
T ss_pred EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999987 6655888764321 1111 1222222 3333 3344678999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
+++| |+.....+...++....+ +.|++.++ ..||+++++++|++..
T Consensus 475 ililDEpts~LD~~~~~~i~~~l~~~~~~-~~tvi~ith~~~~~~~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 475 LVVLDEPNSNLDEEGEQALANAIKALKAR-GITVVVITHRPSLLGCVDKILVLQDGRIAR 533 (544)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHhhC-CCEEEEEeCCHHHHHhCCEEEEEECCEEEe
Confidence 9999 777788888888776533 55666333 4689999999999743
No 292
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=99.67 E-value=8.7e-17 Score=171.81 Aligned_cols=229 Identities=26% Similarity=0.429 Sum_probs=159.1
Q ss_pred CCCCCCCC-CCCCCCCcCccccccCCCCCccccCCcchhhhhhhcccccccchhhhhhhhccCCceeecccccchhhhcC
Q 007511 72 GNYDEATP-KLTVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKH 150 (601)
Q Consensus 72 ~~~~~~~~-~~~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~ 150 (601)
|+.++..| +...|.|||+.+.+++...|||+|.. +|.. .++.. ..
T Consensus 27 ~~~~~~~p~~~v~c~~~~~~~~c~s~s~~~~~P~~-----~~~~-----~~d~d------------------------~~ 72 (572)
T KOG1249|consen 27 GTPDPRLPASSVNCSGCGAELHCQSASSPGYLPLE-----IFLR-----LSERD------------------------GF 72 (572)
T ss_pred CCCCcCCCCccceecCCCceEEEeccCCCCCCchH-----hhcc-----ccccc------------------------cc
Confidence 67777777 88899999999999999999998642 2221 01100 01
Q ss_pred CCceeccccccccccCcccccccccCCCCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhh
Q 007511 151 EKPVVCARCHALRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENER 230 (601)
Q Consensus 151 ~~~~~C~RC~~l~hy~~~~~~~~~~~lP~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~ 230 (601)
....+|+||+-|.||+......+ .|. .|.+.+. ...+...++.+|||..|++.++++.+...+..
T Consensus 73 ~~~~~cpgc~~l~~~~~~~~~~v---~~~-~y~k~~~----~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~------- 137 (572)
T KOG1249|consen 73 LAAIVCPGCGFLEHMRAALAVPV---VPG-EYKKEKS----EKQENPALARKVVDLSDEPCSIDPLLTNDVGS------- 137 (572)
T ss_pred cccccCCcchHHHHhhhhccCcc---Chh-hhhhhhh----hhhhcccceEEeeecccCccccccchhhcccC-------
Confidence 23689999999999997664322 233 3333222 22233578899999999999988887776642
Q ss_pred hhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHH-----HHHcCC------CccceEEEEEeEeecCCccccchh
Q 007511 231 AWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR-----AREDGI------SKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 231 ~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~-----~~~~g~------~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
+..++++||+|++|.+...-.... ++.. .+..+. ..|.++..++++.+||.++|+-.+
T Consensus 138 ----------~~~~v~~n~vdl~p~d~~~~~c~r-c~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~l 206 (572)
T KOG1249|consen 138 ----------PRLFVDGNKVDLLPKDSRPGYCQR-CHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVML 206 (572)
T ss_pred ----------CceEeeccccccccccccchHHHH-HHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHh
Confidence 247999999999998643222221 1111 111111 125567788999999999988777
Q ss_pred hhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeec
Q 007511 300 VDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEG 364 (601)
Q Consensus 300 ~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~ 364 (601)
....--+|.++.+|+.|+||||++|+|+..... ++. .-+.+-..+.+++|+||....+++.
T Consensus 207 vd~~df~Gdf~lvg~tnvgks~~fn~ll~sD~c-~~~---~p~lVd~aT~~dwpgTtlsllkfpv 267 (572)
T KOG1249|consen 207 VDIVDFRGDFYLVGATNVGKSTLFNALLESDLC-SVN---APKLVDRATISDWPGTTLSLLKFPV 267 (572)
T ss_pred hheeeccCceeeeeecccchhhHHHHHhhhccc-ccc---ccceeeeeecccCCccccchhhCcc
Confidence 666667899999999999999999999976643 221 2245667899999999988777753
No 293
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=7.1e-17 Score=157.62 Aligned_cols=150 Identities=22% Similarity=0.254 Sum_probs=112.7
Q ss_pred EEEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccc--cCCCCCcc--------cccccee
Q 007511 281 LHFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGDG--------EEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~--~~~~G~i~--------~~~~~i~ 345 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||+|||||+++|+|+. .++.|.+. ..++.++
T Consensus 4 l~~~~l~~~~~~~~~~~~~l~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 4 LTWKNLNYTVPVKGGKRQLLNNI-SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEeeeEEEecCCCCceEeEEcc-EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 445666666753 5689999 89999997665 9999999999999999986 37888542 1245688
Q ss_pred EeeecCC--CCCc-eeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccch
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGH 413 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~ 413 (601)
+++|.+. +++| .+++.+. ..+ ..||+||+||+++|+++ +|++++| |+..
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~-------~~~------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~ 143 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFS-------ALL------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143 (192)
T ss_pred EecccCccccCCcHHHHHHHH-------HHH------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHH
Confidence 8888654 5545 5554321 001 17999999999999999 9999998 8889
Q ss_pred HHHHHHHHHHHHHhcCceEEEE--------EEeecCEEEeec-ceec
Q 007511 414 SIHIAGLMRMDVEESSVESIYV--------TVWASPYLPLHM-GKTE 451 (601)
Q Consensus 414 ~~~l~~lir~~~~~~g~tii~~--------~~~ad~vl~l~~-Gki~ 451 (601)
...+..+++..... +.+++.+ ..+||+++.|++ |++.
T Consensus 144 ~~~l~~~l~~~~~~-~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 144 AYNIVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189 (192)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEE
Confidence 99999999987654 6666632 346899999988 8764
No 294
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.67 E-value=7.3e-17 Score=179.98 Aligned_cols=156 Identities=13% Similarity=0.189 Sum_probs=123.4
Q ss_pred cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-------------cccceeEeeecC-----CCC
Q 007511 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------------EKNIVSHLTEAP-----VPG 354 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------------~~~~i~~v~qs~-----~pg 354 (601)
.+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+.. .+..+++++|.+ .+.
T Consensus 267 ~~l~~i-sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPI-SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred Ccccce-eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 588999 89999997555 9999999999999999999999996521 124688999974 254
Q ss_pred Cc-eeeeeeecc---------cc------chhhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 355 TT-LGIVRVEGV---------LP------AQAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 355 tT-~~~i~~~~~---------l~------~~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
.| .+++.+... .. ...++++.+|+. . .++.+..|||||||||+||++| +|++++|
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 55 666543210 00 124678889994 3 7889999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++.+..+ |.+++. +..+||++++|.+|++.
T Consensus 426 ~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~~g~i~ 475 (501)
T PRK11288 426 GIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIA 475 (501)
T ss_pred CCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEECCEEE
Confidence 899999999999988766 667763 44689999999999874
No 295
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=9.6e-17 Score=162.95 Aligned_cols=168 Identities=16% Similarity=0.174 Sum_probs=125.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.. +++|.+. ..
T Consensus 4 l~~~~v~~~~~~~~~l~~~-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNV-NLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEeEEEEeCCeEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 4566777777777799999 99999997655 99999999999999999864 3677431 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeecccc----c------hhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVLP----A------QAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l~----~------~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.++|++|.+. +.+..+++.+..... . ..++++..|+.. .++.+..||+||+||+++|++|
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~ 162 (250)
T PRK14266 83 RKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIA 162 (250)
T ss_pred hhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 456899999865 544477765431111 1 134566777632 4677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+.....+..+++... + +.+++. +..++++++++++|++.
T Consensus 163 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~ 224 (250)
T PRK14266 163 VSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLNGEII 224 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEECCeEE
Confidence 9999999 7888899999998774 3 456663 34578889999999884
No 296
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.1e-16 Score=171.91 Aligned_cols=171 Identities=16% Similarity=0.191 Sum_probs=130.4
Q ss_pred ceEEEEEeEeecCCcc-ccchhhhhcccCC-cEEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 279 TKLHFVSAVKNWGLKS-LIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~~-LL~~I~~l~~~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
+.|.+.++...||.+. +++++ ++.+++| +|++||.|||||||+||+|+++.. .+|.+ .-.|+-|
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gv-sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGV-SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred CcEEEEeeEEEeCCCCceecce-eEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 4588899999999877 99999 9999988 588899999999999999999998 88854 3456789
Q ss_pred eEeeecCC--CCCceeeeeeeccccc---hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA---QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~---~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
|++||+.. .+|...|+.+.-.-.. ..++.+..|+.+ .+..-..|||||+|||+++|++ +|+
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 99999886 5555788776422111 134455555543 2234567999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEE------EEEeecCEEEeecceecch
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIY------VTVWASPYLPLHMGKTENA 453 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~------~~~~ad~vl~l~~Gki~~a 453 (601)
++++ |......+.+.++.. ..+.|++. ....||+++++.+|++...
T Consensus 508 Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 508 ILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred eEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 9999 555566777777662 34677773 3457899999999998543
No 297
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.67 E-value=5.8e-17 Score=164.60 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=117.9
Q ss_pred ccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEeeecCC--CCCc-ee
Q 007511 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHLTEAPV--PGTT-LG 358 (601)
Q Consensus 295 LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v~qs~~--pgtT-~~ 358 (601)
.++++ ++.+.+|++++ +|+||+|||||+++|+|+.+ .+|.+. ..++.++|++|.+. +..| .+
T Consensus 11 ~l~~v-sl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPL-SAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecce-EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 67888 88889998765 99999999999999999985 477441 12345899998753 4455 66
Q ss_pred eeeeeccc--cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc-C--------CCEEEe-------ccch
Q 007511 359 IVRVEGVL--PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL-K--------PRTYRI-------KAGH 413 (601)
Q Consensus 359 ~i~~~~~l--~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL-~--------P~lllL-------D~~~ 413 (601)
++.+.... .. ..++++.+|+.. .++.+..||+||+||+++|++| . |++++| |+..
T Consensus 89 nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~ 168 (248)
T PRK03695 89 YLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168 (248)
T ss_pred HHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHH
Confidence 65442111 11 146788889876 6788999999999999999999 3 489998 8888
Q ss_pred HHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 414 SIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 414 ~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+..+..+++....+ +.+++.+ ..+||++++|++|++.
T Consensus 169 ~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~ 212 (248)
T PRK03695 169 QAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212 (248)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999887655 6677633 3589999999999984
No 298
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.66 E-value=9.4e-17 Score=150.67 Aligned_cols=154 Identities=21% Similarity=0.310 Sum_probs=113.6
Q ss_pred hhcccCC-cEEEECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEeeecCC----CCCcee-eeee
Q 007511 301 DLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHLTEAPV----PGTTLG-IVRV 362 (601)
Q Consensus 301 ~l~~~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v~qs~~----pgtT~~-~i~~ 362 (601)
++...+| .++++|.||+|||||.++|+|.++|.+|.+ ....+.|.++||++. |..... .+..
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~ 112 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDF 112 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcc
Confidence 4445555 466799999999999999999999999965 234467889999876 332211 1111
Q ss_pred eccc----cc---hhhh---hccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHH
Q 007511 363 EGVL----PA---QAKL---FDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLM 421 (601)
Q Consensus 363 ~~~l----~~---~~~l---lDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~li 421 (601)
+..+ .. ...+ +...|+.. .+-+++.||.||+|||++|||| +|++++. |...+..+.++.
T Consensus 113 PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~ 192 (267)
T COG4167 113 PLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred hhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHH
Confidence 1111 11 1334 44567765 6778999999999999999998 9999997 677788888888
Q ss_pred HHHHHhcCceEEEE-------EEeecCEEEeecceecchH
Q 007511 422 RMDVEESSVESIYV-------TVWASPYLPLHMGKTENAC 454 (601)
Q Consensus 422 r~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~a~ 454 (601)
-.+.++.|..-+++ ..++|.+++||.|++.+..
T Consensus 193 LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G 232 (267)
T COG4167 193 LELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232 (267)
T ss_pred HHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecC
Confidence 88888778776644 4689999999999985543
No 299
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.66 E-value=9.6e-17 Score=182.22 Aligned_cols=170 Identities=13% Similarity=0.134 Sum_probs=127.4
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|+. ..+++++ ++.+++|+ ++++|+||+|||||+++|+|+++|++|.+ ...++.+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i-~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 419 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNI-NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQV 419 (582)
T ss_pred eEEEEEEEEecCCCCCccccCc-eEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhc
Confidence 5778888888854 5699999 99999886 55599999999999999999999999955 2345779
Q ss_pred eEeeecCC--CCCceeeeeeecc--ccc--hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGV--LPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~--l~~--~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+|++|++. ++|-++|+.+... ... ..+.++..|+.. .......|||||+||+++||+| +|
T Consensus 420 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 420 ALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred eEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 99999987 6655888876311 111 133344444321 1122356999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE------EEeecCEEEeecceecc
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~------~~~ad~vl~l~~Gki~~ 452 (601)
++++| |+.....+...+..... +.|++.+ ...||+++++++|++..
T Consensus 500 ~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e 558 (582)
T PRK11176 500 PILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIEKADEILVVEDGEIVE 558 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 99999 78888888888876533 4566633 34799999999999843
No 300
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.66 E-value=1.4e-16 Score=153.41 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=95.6
Q ss_pred EeEeecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeee
Q 007511 285 SAVKNWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVE 363 (601)
Q Consensus 285 Sa~kg~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~ 363 (601)
++.+.||...++.++ +.+.+|+++ ++|+||||||||+|+|+|+.+|++|.+......+++++|..
T Consensus 5 ~l~~~~~~~~~l~~~--~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~------------ 70 (177)
T cd03222 5 DCVKRYGVFFLLVEL--GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYI------------ 70 (177)
T ss_pred CeEEEECCEEEEccC--cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccC------------
Confidence 345667777777763 567778655 59999999999999999999999996532222233322211
Q ss_pred ccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE
Q 007511 364 GVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY 434 (601)
Q Consensus 364 ~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~ 434 (601)
.||+||+||+++|+++ +|++++| |+..+..+..+++....+.+.+++.
T Consensus 71 -----------------------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiii 127 (177)
T cd03222 71 -----------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127 (177)
T ss_pred -----------------------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 0999999999999999 9999999 7888889999998876654356663
Q ss_pred E-------EEeecCEEEeecce
Q 007511 435 V-------TVWASPYLPLHMGK 449 (601)
Q Consensus 435 ~-------~~~ad~vl~l~~Gk 449 (601)
+ ..+||++++++++.
T Consensus 128 vsH~~~~~~~~~d~i~~l~~~~ 149 (177)
T cd03222 128 VEHDLAVLDYLSDRIHVFEGEP 149 (177)
T ss_pred EECCHHHHHHhCCEEEEEcCCC
Confidence 3 34789999888654
No 301
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.66 E-value=1.6e-16 Score=184.31 Aligned_cols=169 Identities=14% Similarity=0.192 Sum_probs=127.9
Q ss_pred eEEEEEeEeecC-CccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------ccccccee
Q 007511 280 KLHFVSAVKNWG-LKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G-~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~ 345 (601)
.|.+.++...|+ ...+++++ ++.+++|+ ++++|+||||||||+++|+|++.|++|.+ ...++.++
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~i-sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDI-SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred cEEEEEEEEEcCCCCcceece-eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 477888888886 35799999 99999885 56699999999999999999999999965 24567899
Q ss_pred EeeecCC--CCCceeeeeeec-c-ccc--hhhhhccCCCc-----------C-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 346 HLTEAPV--PGTTLGIVRVEG-V-LPA--QAKLFDTPGLL-----------H-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 346 ~v~qs~~--pgtT~~~i~~~~-~-l~~--~~~llDtpGL~-----------~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
+++|++. ++|-++|+.+.. . ... ..+.++..|+. . .......|||||+||++||||+ +|+
T Consensus 552 ~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ 631 (708)
T TIGR01193 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK 631 (708)
T ss_pred EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 9999998 666589887641 1 111 12334444432 1 1223467999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
+++| |+.....+...++.. + +.|++.++ ..||++++|++|++..
T Consensus 632 iliLDE~Ts~LD~~te~~i~~~L~~~--~-~~T~IiitHr~~~~~~~D~i~~l~~G~i~~ 688 (708)
T TIGR01193 632 VLILDESTSNLDTITEKKIVNNLLNL--Q-DKTIIFVAHRLSVAKQSDKIIVLDHGKIIE 688 (708)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh--c-CCEEEEEecchHHHHcCCEEEEEECCEEEE
Confidence 9999 677777787777753 3 55666433 4789999999999843
No 302
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.66 E-value=3.2e-16 Score=178.19 Aligned_cols=170 Identities=15% Similarity=0.195 Sum_probs=127.6
Q ss_pred eEEEEEeEeecCC-ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------ccccccee
Q 007511 280 KLHFVSAVKNWGL-KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G~-~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~ 345 (601)
.+.+.++..+|+. ..+++++ ++.+++|+. +++|+||+|||||+++|+|+++|..|.+ ...++.++
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~i-nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDV-SFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred eEEEEEEEEEeCCCCceecce-eEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 4777788888854 5699999 999999975 5599999999999999999999999954 23457899
Q ss_pred EeeecCC--CCCceeeeeeecc-ccc--hhhhhccCCCc-----------C-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 346 HLTEAPV--PGTTLGIVRVEGV-LPA--QAKLFDTPGLL-----------H-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 346 ~v~qs~~--pgtT~~~i~~~~~-l~~--~~~llDtpGL~-----------~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
|++|++. ++|-++|+.+... ... ....++..|+. . .......|||||+||+++||++ +|++
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i 492 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492 (588)
T ss_pred EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999997 6666888876421 111 12233444432 1 1222456999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
++| |+.....+.+.++.... +.|++.++ ..||+++.|++|++..
T Consensus 493 liLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiitHr~~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 493 LILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLSTVRNADRILVFDNGRVVE 549 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEecHHHHHhCCEEEEEECCEEEE
Confidence 999 78888888888776532 46666444 4689999999999753
No 303
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=9.1e-17 Score=164.14 Aligned_cols=169 Identities=16% Similarity=0.194 Sum_probs=126.8
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCcc--------------c
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGDG--------------E 339 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i~--------------~ 339 (601)
.+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.++ ++|.+. .
T Consensus 7 ~l~~~~l~~~~~~~~il~~i-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGI-SMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred eEEEEEEEEEECCeEeecce-EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 35667788888877899999 99999997655 999999999999999999875 367331 1
Q ss_pred cccceeEeeecCC--CCCceeeeeeeccc----cc------hhhhhccCCCc----C-cCCccCCCCHHHHHHhcccccc
Q 007511 340 EKNIVSHLTEAPV--PGTTLGIVRVEGVL----PA------QAKLFDTPGLL----H-PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT~~~i~~~~~l----~~------~~~llDtpGL~----~-~~~~~~~LSgGe~qrv~iaraL 402 (601)
.+..+++++|.+. +.+..+++.+.... .. ..++++..|+. . .++.+..||+||+||++||++|
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 165 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 2346899999875 53336666532110 11 13567777773 2 5677899999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEee-----cceec
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLH-----MGKTE 451 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~-----~Gki~ 451 (601)
+|++++| |+.....+..+++.... +.+++.+ ..+||++++|+ +|++.
T Consensus 166 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~ 233 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMV 233 (259)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEE
Confidence 9999999 78889999999988753 3566633 35789999997 48873
No 304
>PLN03211 ABC transporter G-25; Provisional
Probab=99.66 E-value=7.8e-17 Score=184.39 Aligned_cols=163 Identities=19% Similarity=0.259 Sum_probs=126.6
Q ss_pred eEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC--CCCc--------cccccceeEeeecCC--
Q 007511 286 AVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG--RGGD--------GEEKNIVSHLTEAPV-- 352 (601)
Q Consensus 286 a~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~--~G~i--------~~~~~~i~~v~qs~~-- 352 (601)
..+.++.+.+++++ ++.+.+|++++ +|+||||||||+|+|+|..++. +|++ ...++.++|++|.+.
T Consensus 74 l~~~~~~~~iL~~v-s~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~ 152 (659)
T PLN03211 74 ETRQIQERTILNGV-TGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILY 152 (659)
T ss_pred ccccCCCCeeeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccC
Confidence 34566677899999 99999997655 9999999999999999998875 6754 123456899999876
Q ss_pred CCCc-eeeeeeeccc------cc------hhhhhccCCCcC-c-----CCccCCCCHHHHHHhcccccc--CCCEEEe--
Q 007511 353 PGTT-LGIVRVEGVL------PA------QAKLFDTPGLLH-P-----NQITTRLTREEQKLVNINKEL--KPRTYRI-- 409 (601)
Q Consensus 353 pgtT-~~~i~~~~~l------~~------~~~llDtpGL~~-~-----~~~~~~LSgGe~qrv~iaraL--~P~lllL-- 409 (601)
+..| .+++.+...+ .. ..++++.+||.+ . ++....||||||||++||++| +|++++|
T Consensus 153 ~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE 232 (659)
T PLN03211 153 PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 232 (659)
T ss_pred CcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC
Confidence 6666 7776543211 11 145788889965 2 445678999999999999999 9999999
Q ss_pred -----ccchHHHHHHHHHHHHHhcCceEEEE--------EEeecCEEEeeccee
Q 007511 410 -----KAGHSIHIAGLMRMDVEESSVESIYV--------TVWASPYLPLHMGKT 450 (601)
Q Consensus 410 -----D~~~~~~l~~lir~~~~~~g~tii~~--------~~~ad~vl~l~~Gki 450 (601)
|...+..+..+++....+ |.|++.. ..++|+++.|++|++
T Consensus 233 PtsgLD~~~~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~~G~i 285 (659)
T PLN03211 233 PTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSEGRC 285 (659)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEecCCcE
Confidence 888999999999988765 6777632 246899999999987
No 305
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.66 E-value=7e-17 Score=165.46 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=114.7
Q ss_pred ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCc-eeeeeeecc---
Q 007511 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTT-LGIVRVEGV--- 365 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT-~~~i~~~~~--- 365 (601)
..+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+... ..++++.+... +.+| .+++.+...
T Consensus 37 ~~il~~i-s~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~-g~~~~~~~~~~~~~~~tv~enl~~~~~~~~ 114 (264)
T PRK13546 37 FFALDDI-SLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN-GEVSVIAISAGLSGQLTGIENIEFKMLCMG 114 (264)
T ss_pred eEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC-CEEeEEecccCCCCCCcHHHHHHHHHHHcC
Confidence 3467788 88888887655 99999999999999999999999976322 12345544432 4455 555532110
Q ss_pred ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcC
Q 007511 366 LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESS 429 (601)
Q Consensus 366 l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g 429 (601)
... ...+++..|+.. .++.+..||+||+||+++|+++ +|++++| |+.....+..++.....+ +
T Consensus 115 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~-g 193 (264)
T PRK13546 115 FKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ-N 193 (264)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC-C
Confidence 111 134677778866 6778899999999999999999 9999999 777788888888877544 6
Q ss_pred ceEEEE-------EEeecCEEEeecceec
Q 007511 430 VESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 430 ~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
.+++.+ ..+||+++++++|++.
T Consensus 194 ~tiIiisH~~~~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 194 KTIFFVSHNLGQVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CEEEEEcCCHHHHHHHcCEEEEEECCEEE
Confidence 666633 3478999999999874
No 306
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1e-16 Score=183.43 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=127.6
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcccc-ccceeEeeecCC----CC
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPV----PG 354 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~-~~~i~~v~qs~~----pg 354 (601)
+.+.++.+.|+...+++++ ++.+.+|+++ ++|+||||||||+++|+|+.+|++|.+... ...++|++|... +.
T Consensus 313 l~~~~l~~~y~~~~il~~i-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~ 391 (638)
T PRK10636 313 LKMEKVSAGYGDRIILDSI-KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRAD 391 (638)
T ss_pred EEEEeeEEEeCCeeeeccc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCcc
Confidence 5567888889888899999 9999999755 599999999999999999999999987432 346899998642 22
Q ss_pred Cc-eeeeeeec-cc--cchhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHH
Q 007511 355 TT-LGIVRVEG-VL--PAQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAG 419 (601)
Q Consensus 355 tT-~~~i~~~~-~l--~~~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~ 419 (601)
.| .+.+.... .. .....+++.+|+.. .++.+..|||||+|||+||+++ +|++++| |+.....+..
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~ 471 (638)
T PRK10636 392 ESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE 471 (638)
T ss_pred chHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 23 22221000 00 01246788899853 6788999999999999999999 9999999 7888888888
Q ss_pred HHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 420 LMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 420 lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+++.. . + +++.+ ..+||++++|++|++.
T Consensus 472 ~L~~~--~-g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 472 ALIDF--E-G-ALVVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred HHHHc--C-C-eEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 88765 2 4 56643 3579999999999985
No 307
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.66 E-value=3.9e-16 Score=181.03 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=121.9
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------cccccc
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNI 343 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~ 343 (601)
.|.+.++...|.. ..+++++ ++.+++|+. ++||+||+|||||+++|+|+++|++|.+ ...++.
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~i-sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGL-TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCc-eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 4778888888853 4689999 999999965 5599999999999999999999999965 234678
Q ss_pred eeEeeecCC--CCCceeeeeeeccccch---hhhhccCCCc-----------C-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 344 VSHLTEAPV--PGTTLGIVRVEGVLPAQ---AKLFDTPGLL-----------H-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 344 i~~v~qs~~--pgtT~~~i~~~~~l~~~---~~llDtpGL~-----------~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+++++|.+. .+|-++|+.+....... .+.++..|+. . .......|||||+||++|||++ +|
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999998 66558988764221111 2233333332 2 2223457999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
++++| |+.....+.+ .....+.|++.++ ..||++++|++|++..
T Consensus 637 ~ILILDEpTSaLD~~te~~i~~----~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 637 RVLILDEATSALDAECEQLLQE----SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVE 693 (711)
T ss_pred CEEEEEccccccCHHHHHHHHH----hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999 4544444444 1122356766433 3689999999999853
No 308
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.66 E-value=7.8e-17 Score=179.77 Aligned_cols=156 Identities=18% Similarity=0.232 Sum_probs=123.3
Q ss_pred cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-------------cccceeEeeecC----C-CC
Q 007511 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------------EKNIVSHLTEAP----V-PG 354 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------------~~~~i~~v~qs~----~-pg 354 (601)
.+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+.. .++.++|++|.+ . +.
T Consensus 266 ~~l~~v-sl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 266 PGVNDV-SFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CCcccc-eEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 368888 88999997655 9999999999999999999999986521 134689999985 2 55
Q ss_pred Cc-eeeeeeec-----c----ccc------hhhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 355 TT-LGIVRVEG-----V----LPA------QAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 355 tT-~~~i~~~~-----~----l~~------~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
.| .+++.+.. . ... ..++++.+|+. . .++.+..|||||||||++|++| +|++++|
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~ 424 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR 424 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 56 66554321 0 111 14678889994 3 7888999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ |.+++. +..+||++++|++|++.
T Consensus 425 ~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 474 (501)
T PRK10762 425 GVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRIS 474 (501)
T ss_pred CCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 899999999999988765 667663 34589999999999874
No 309
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.66 E-value=1.7e-16 Score=179.80 Aligned_cols=170 Identities=16% Similarity=0.186 Sum_probs=129.0
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|+. +.+++++ ++.+++|+. +++|+||+|||||+++|+|+++|++|.+ ...++.+
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i-~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGL-SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred eEEEEEEEEECCCCCCcceecc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 5778888888854 4689999 999998865 5599999999999999999999999954 2346679
Q ss_pred eEeeecCC--CCCceeeeeeeccccc---hhhhhccCCCcC-----------cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA---QAKLFDTPGLLH-----------PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~---~~~llDtpGL~~-----------~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
++++|.+. +++-.+|+.+...-.. ..+.++..|+.+ .......|||||+||+++||++ +|++
T Consensus 417 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i 496 (574)
T PRK11160 417 SVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL 496 (574)
T ss_pred eEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999987 6655888876421111 134455555543 1123567999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
++| |+.....+...++.... +.|++.++ ..||+++++++|++..
T Consensus 497 lilDE~ts~lD~~t~~~i~~~l~~~~~--~~tviiitHr~~~~~~~d~i~~l~~G~i~~ 553 (574)
T PRK11160 497 LLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLEQFDRICVMDNGQIIE 553 (574)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecChhHHHhCCEEEEEeCCeEEE
Confidence 999 77788888888876642 45665332 3689999999999843
No 310
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1.5e-16 Score=162.83 Aligned_cols=167 Identities=14% Similarity=0.096 Sum_probs=125.1
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-----CCCCc-------c-------ccc
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-----GRGGD-------G-------EEK 341 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-----~~G~i-------~-------~~~ 341 (601)
.+...+..|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+..| ++|.+ . ..+
T Consensus 10 ~~~~~~~~~~~~~~l~~v-s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 88 (261)
T PRK14263 10 DCKLDKIFYGNFMAVRDS-HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR 88 (261)
T ss_pred EEEeEEEEeCCEEEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhh
Confidence 344455667777899999 99999997655 999999999999999999976 57743 1 124
Q ss_pred cceeEeeecCC-CCCc-eeeeeeeccc---c-----chhhhhccCCCcC-----cCCccCCCCHHHHHHhcccccc--CC
Q 007511 342 NIVSHLTEAPV-PGTT-LGIVRVEGVL---P-----AQAKLFDTPGLLH-----PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 342 ~~i~~v~qs~~-pgtT-~~~i~~~~~l---~-----~~~~llDtpGL~~-----~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+.+++++|.+. ...| .+++.+.... . ...++++..|+.. .++.+..||+||+||+++|++| +|
T Consensus 89 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p 168 (261)
T PRK14263 89 RYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168 (261)
T ss_pred hceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 56899999875 2344 6776543111 1 1246788888743 3456789999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEee--------cceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLH--------MGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~--------~Gki~ 451 (601)
++++| |+.....+..+++... + +.+++. +..+||++++|+ .|++.
T Consensus 169 ~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 169 EVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 99999 8889999999998874 3 456653 345889999995 78764
No 311
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.66 E-value=1.3e-16 Score=174.75 Aligned_cols=167 Identities=14% Similarity=0.163 Sum_probs=121.5
Q ss_pred EEEEEeEeecCC---ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeec--CCCC
Q 007511 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEA--PVPG 354 (601)
Q Consensus 281 V~lvSa~kg~G~---~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs--~~pg 354 (601)
+.+.++...++. +.+++++ ++.+.+|++++ +|+||+|||||+++|+|+.+|+.|.+...... .++... ..+.
T Consensus 22 L~lknL~~~~~~~~~~~IL~nV-SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~-~~i~~~~~l~~~ 99 (549)
T PRK13545 22 DKLKDLFFRSKDGEYHYALNNI-SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA-ALIAISSGLNGQ 99 (549)
T ss_pred eEEEEEEEecCCCccceEEeee-EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe-eeEEeccccCCC
Confidence 334455555554 3589999 99999997655 99999999999999999999999976322111 111111 1244
Q ss_pred Cc-eeeeeeecc---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchH
Q 007511 355 TT-LGIVRVEGV---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHS 414 (601)
Q Consensus 355 tT-~~~i~~~~~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~ 414 (601)
+| .+++.+... ... ...+++.+|+.. .++.+..|||||+||+++|++| +|++++| |+...
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr 179 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT 179 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 55 666543211 111 135778888876 6788999999999999999999 9999999 78888
Q ss_pred HHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeeccee
Q 007511 415 IHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKT 450 (601)
Q Consensus 415 ~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki 450 (601)
..+..+++....+ |.+++.++ .+||+++.|++|++
T Consensus 180 ~~LlelL~el~~~-G~TIIIVSHdl~~i~~l~DrIivL~~GkI 221 (549)
T PRK13545 180 KKCLDKMNEFKEQ-GKTIFFISHSLSQVKSFCTKALWLHYGQV 221 (549)
T ss_pred HHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8899999887654 66766433 47999999999987
No 312
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1.3e-16 Score=182.65 Aligned_cols=166 Identities=15% Similarity=0.178 Sum_probs=122.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCccccc-cceeEeeecCC-CCCc-
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAPV-PGTT- 356 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~-~~i~~v~qs~~-pgtT- 356 (601)
+.+.++.+.||.+.+++++ ++.+.+|++ ++||+|||||||||++|+|+..|++|.+.... ..+++++|... ...+
T Consensus 2 i~i~nls~~~g~~~~l~~v-s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNA-TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred EEEEEEEEEeCCceeecCc-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 4567888999998999999 999999965 55999999999999999999999999764322 24677777432 1111
Q ss_pred eeeee------------------------ee---cc---cc------chhhhhccCCCc--CcCCccCCCCHHHHHHhcc
Q 007511 357 LGIVR------------------------VE---GV---LP------AQAKLFDTPGLL--HPNQITTRLTREEQKLVNI 398 (601)
Q Consensus 357 ~~~i~------------------------~~---~~---l~------~~~~llDtpGL~--~~~~~~~~LSgGe~qrv~i 398 (601)
.+.+. +. .. .. ....+++.+|+. ..++.+..|||||+|||+|
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 22110 00 00 00 114578889996 2688899999999999999
Q ss_pred cccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 399 NKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 399 araL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
|++| +|++++| |+.....+..+++.. +.+++. +..+||+++.|++|++.
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 9999 9999999 777787777777653 335553 34579999999999873
No 313
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.65 E-value=2e-16 Score=151.69 Aligned_cols=147 Identities=30% Similarity=0.472 Sum_probs=95.9
Q ss_pred cEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCc
Q 007511 198 SVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISK 277 (601)
Q Consensus 198 dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~ 277 (601)
|+|++|+|++++.++.++.+.+++... . .+ .|+++|+||+||+++ ..+..|+.++.+......
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~---------~---~~-kp~IlVlNK~DL~~~----~~l~~~~~~~~~~~~~~~ 63 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQA---------G---GN-KKLVLVLNKIDLVPK----ENVEKWLKYLRREFPTVA 63 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhc---------c---CC-CCEEEEEehhhcCCH----HHHHHHHHHHHhhCCEEE
Confidence 789999999999999888888874210 0 12 389999999999864 467888887654421100
Q ss_pred c--------------------ceEEEEEeEeecCCccccchhhhhcccC-----CcEEEECCCCCchhHHHHHHhccccC
Q 007511 278 I--------------------TKLHFVSAVKNWGLKSLIDDVVDLAGKR-----GNVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 278 ~--------------------~~V~lvSa~kg~G~~~LL~~I~~l~~~~-----G~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
+ ....++++...+|.+.+++.+..+...+ ..++++|.+|+|||||||+|+|...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~- 142 (172)
T cd04178 64 FKASTQSQKKNLGQKSVKVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRA- 142 (172)
T ss_pred EEecccccccchhhcccccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCccc-
Confidence 0 0011223334444445544443332221 2678899999999999999997532
Q ss_pred CCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCC
Q 007511 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (601)
Q Consensus 333 ~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL 378 (601)
...++.||+|.....+. +.....++|+||+
T Consensus 143 --------------~~~~~~pg~T~~~~~~~--~~~~~~l~DtPGi 172 (172)
T cd04178 143 --------------CNVGATPGVTKSMQEVH--LDKKVKLLDSPGI 172 (172)
T ss_pred --------------ceecCCCCeEcceEEEE--eCCCEEEEECcCC
Confidence 23456699997665553 2344679999996
No 314
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.65 E-value=2.5e-16 Score=163.43 Aligned_cols=157 Identities=17% Similarity=0.280 Sum_probs=123.5
Q ss_pred cccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc---------------cccccceeEeeecCC----C
Q 007511 294 SLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD---------------GEEKNIVSHLTEAPV----P 353 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i---------------~~~~~~i~~v~qs~~----p 353 (601)
...+++ ++...+|+ +.+||.+|||||||=.+|++++.+. |.+ ...++.+..|||+|+ |
T Consensus 301 ~AVd~i-sl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP 378 (534)
T COG4172 301 RAVDGI-SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP 378 (534)
T ss_pred EEeccc-eeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence 356666 77777886 5569999999999999999999776 644 345778899999998 7
Q ss_pred CCceee-eeeeccccc-----------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------c
Q 007511 354 GTTLGI-VRVEGVLPA-----------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------K 410 (601)
Q Consensus 354 gtT~~~-i~~~~~l~~-----------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D 410 (601)
.+|.+. +........ ..+.+...|+.. .+++++++||||+||++||||+ +|++++| |
T Consensus 379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 788443 332221111 146788899987 8999999999999999999998 9999999 5
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 411 AGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
..-+..+.++++.+..+.+.+-+++. .+|+++++|++|++.+
T Consensus 459 ~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE 507 (534)
T COG4172 459 RSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE 507 (534)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEee
Confidence 55667889999998887777666443 5899999999999854
No 315
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.65 E-value=2e-16 Score=184.38 Aligned_cols=179 Identities=16% Similarity=0.215 Sum_probs=131.1
Q ss_pred ceEEEEEeEeecCCc---cccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------ccccc
Q 007511 279 TKLHFVSAVKNWGLK---SLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKN 342 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~---~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~ 342 (601)
.+|.+.++...|..+ .+++++ ++.++.|++ ++||+|||||||+++.|.+++.|..|.+ .+.+.
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~-sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGV-SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCe-EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 468888999999765 589999 899999975 5599999999999999999999999954 56778
Q ss_pred ceeEeeecCC-CCCc-eeeeeeeccccchh-------------hhhccC-CCcC-cCCccCCCCHHHHHHhcccccc--C
Q 007511 343 IVSHLTEAPV-PGTT-LGIVRVEGVLPAQA-------------KLFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--K 403 (601)
Q Consensus 343 ~i~~v~qs~~-pgtT-~~~i~~~~~l~~~~-------------~llDtp-GL~~-~~~~~~~LSgGe~qrv~iaraL--~ 403 (601)
.||.|.|.|. ..+| .+|+.+.-.-.... .+...| |+.. ....--+|||||+||++|||+| +
T Consensus 428 ~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~ 507 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRN 507 (1228)
T ss_pred hcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhC
Confidence 9999999998 5666 88888742111111 111222 2211 1122345999999999999999 9
Q ss_pred CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE------EEEeecCEEEeecceecc---hHHHHHHH
Q 007511 404 PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY------VTVWASPYLPLHMGKTEN---ACTMVEKH 460 (601)
Q Consensus 404 P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~------~~~~ad~vl~l~~Gki~~---a~e~~~~~ 460 (601)
|++|+| |+.....+...+..... |.|.+. ..+.||+++++|+|++.+ .+|+++..
T Consensus 508 P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 508 PKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred CCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc
Confidence 999999 67777777777766544 444442 224699999999999843 45666554
No 316
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.6e-16 Score=166.32 Aligned_cols=168 Identities=18% Similarity=0.178 Sum_probs=126.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-----CCCCCcc--------------cc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-----AGRGGDG--------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-----~~~G~i~--------------~~ 340 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||+|||||+++|+|+.. |..|.+. ..
T Consensus 46 l~i~nl~~~~~~~~iL~~i-s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~ 124 (305)
T PRK14264 46 LSVEDLDVYYGDDHALKGV-SMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVEL 124 (305)
T ss_pred EEEEEEEEEeCCeeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHH
Confidence 5677888888877899999 99999997655 99999999999999999986 5778431 12
Q ss_pred ccceeEeeecCC--CCCceeeeeeeccc---------------c--c-----hhhhhccCCCc----C-cCCccCCCCHH
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVL---------------P--A-----QAKLFDTPGLL----H-PNQITTRLTRE 391 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l---------------~--~-----~~~llDtpGL~----~-~~~~~~~LSgG 391 (601)
++.++|++|.+. +.+..+++.+.... . . ...+++.+|+. . .++.+..||+|
T Consensus 125 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 204 (305)
T PRK14264 125 RKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGG 204 (305)
T ss_pred hhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHH
Confidence 356899999865 54336665532110 0 0 13456667763 2 46678999999
Q ss_pred HHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCE-EEeecceec
Q 007511 392 EQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPY-LPLHMGKTE 451 (601)
Q Consensus 392 e~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~v-l~l~~Gki~ 451 (601)
|+||++||++| +|++++| |+..+..+..+++....+ .+++.+ ..+||++ +++++|++.
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~--~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE--YTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC--CEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 99999999999 9999999 888899999999987653 455533 3478986 567999874
No 317
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.65 E-value=4.8e-16 Score=175.23 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=124.8
Q ss_pred eEEEEEeEeecCC-ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------ccccccee
Q 007511 280 KLHFVSAVKNWGL-KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G~-~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~ 345 (601)
.+.+.++..+|+. ..+++++ ++.+++|+. +++|+||+|||||+++|+|+++|++|.+ ...++.++
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i-~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPI-NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 5778888888854 4589999 999999865 5599999999999999999999999954 13456799
Q ss_pred EeeecCC--CCCceeeeeeeccccchhhhhccCCCcC-c---CCc--cCCCCHHHHHHhcccccc--CCCEEEe------
Q 007511 346 HLTEAPV--PGTTLGIVRVEGVLPAQAKLFDTPGLLH-P---NQI--TTRLTREEQKLVNINKEL--KPRTYRI------ 409 (601)
Q Consensus 346 ~v~qs~~--pgtT~~~i~~~~~l~~~~~llDtpGL~~-~---~~~--~~~LSgGe~qrv~iaraL--~P~lllL------ 409 (601)
+++|++. ++|..++- .........++++..|+.. . +.. ...|||||+||+++||++ +|++++|
T Consensus 401 ~v~q~~~lf~~ti~~n~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~ 479 (547)
T PRK10522 401 AVFTDFHLFDQLLGPEG-KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAAD 479 (547)
T ss_pred EEecChhHHHHhhcccc-CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 9999886 55545541 1100111244666677654 1 111 357999999999999999 9999999
Q ss_pred -ccchHHHHHHHHHHHHHhcCceEEEEEE------eecCEEEeecceecc
Q 007511 410 -KAGHSIHIAGLMRMDVEESSVESIYVTV------WASPYLPLHMGKTEN 452 (601)
Q Consensus 410 -D~~~~~~l~~lir~~~~~~g~tii~~~~------~ad~vl~l~~Gki~~ 452 (601)
|+.....+...+.......+.|++.+++ .||+++++++|++..
T Consensus 480 LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 480 QDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 6767777776665443323567765443 689999999999853
No 318
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.65 E-value=4.6e-16 Score=175.62 Aligned_cols=171 Identities=13% Similarity=0.066 Sum_probs=123.7
Q ss_pred ceEEEEEeEeecCCc-----cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------ccc
Q 007511 279 TKLHFVSAVKNWGLK-----SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------GEE 340 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~-----~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~ 340 (601)
..+.+.++..+|+.+ .+++++ ++.+++|+++. +|+||+|||||+++|+|+++|++|.+ ...
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~v-s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPI-DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccc-eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 357778888888642 489999 99999997555 99999999999999999999999954 234
Q ss_pred ccceeEeeecCC--CCCceeeeeeeccccchhhhhccCCCcC-cC------CccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 341 KNIVSHLTEAPV--PGTTLGIVRVEGVLPAQAKLFDTPGLLH-PN------QITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT~~~i~~~~~l~~~~~llDtpGL~~-~~------~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
++.+++++|.+. .++..++..-........++++..|+.. .. .....|||||+||+++||++ +|++++|
T Consensus 415 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ilil 494 (555)
T TIGR01194 415 RDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLF 494 (555)
T ss_pred HhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 567899999876 5666665321111111245666677654 11 12367999999999999999 9999999
Q ss_pred -------ccchHHHHHHHH-HHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 410 -------KAGHSIHIAGLM-RMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -------D~~~~~~l~~li-r~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
|+.....+...+ +..... +.|++.++ ..||+++++++|++.
T Consensus 495 DE~ts~LD~~~~~~i~~~l~~~~~~~-~~tiiiisH~~~~~~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 495 DEWAADQDPAFKRFFYEELLPDLKRQ-GKTIIIISHDDQYFELADQIIKLAAGCIV 549 (555)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 677777776544 333233 56766443 368999999999874
No 319
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.65 E-value=6e-16 Score=159.62 Aligned_cols=153 Identities=28% Similarity=0.360 Sum_probs=111.4
Q ss_pred HHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHH
Q 007511 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (601)
Q Consensus 186 ~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w 265 (601)
..+++...++.+|+|++|+|++++.++.++.+.+++. + .|+++|+||+||.++ .....|
T Consensus 11 ~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~----------------~-kp~IiVlNK~DL~~~----~~~~~~ 69 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG----------------N-KPRLIVLNKADLADP----AVTKQW 69 (276)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC----------------C-CCEEEEEEccccCCH----HHHHHH
Confidence 3467778888999999999999998888877777653 1 279999999999753 345677
Q ss_pred HHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhccc-------------CCcEEEECCCCCchhHHHHHHhccccC
Q 007511 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK-------------RGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 266 ~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~-------------~G~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
...+ +..+ ..++.+|+.++.|...|++.+..+... ...++++|.+|+|||||||.|.+...
T Consensus 70 ~~~~-~~~~----~~vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~- 143 (276)
T TIGR03596 70 LKYF-EEKG----IKALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKV- 143 (276)
T ss_pred HHHH-HHcC----CeEEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCc-
Confidence 6554 3333 357889999999998887776443211 12478899999999999999986432
Q ss_pred CCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCc
Q 007511 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (601)
Q Consensus 333 ~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~ 381 (601)
...+..||+|.....+. +.....++||||+..+
T Consensus 144 --------------~~~~~~~g~T~~~~~~~--~~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 144 --------------AKVGNRPGVTKGQQWIK--LSDGLELLDTPGILWP 176 (276)
T ss_pred --------------cccCCCCCeecceEEEE--eCCCEEEEECCCcccC
Confidence 22345588886655443 3345689999999754
No 320
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.65 E-value=7.6e-17 Score=160.04 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=105.8
Q ss_pred ccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-ccccceeEeeecC-C-CCCc-eeeeeeeccccc-
Q 007511 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-EEKNIVSHLTEAP-V-PGTT-LGIVRVEGVLPA- 368 (601)
Q Consensus 295 LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-~~~~~i~~v~qs~-~-pgtT-~~~i~~~~~l~~- 368 (601)
+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. .....+ .+.+.+ . |++| .+++.+.....+
T Consensus 2 vl~~v-s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~~~~~~~l~~~ltv~enl~~~~~~~~~ 79 (213)
T PRK15177 2 VLDKT-DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-PLGANSFILPGLTGEENARMMASLYGL 79 (213)
T ss_pred eeeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-ccccccccCCcCcHHHHHHHHHHHcCC
Confidence 56778 88889997665 999999999999999999999999764 221111 111222 2 6666 666654321111
Q ss_pred -----hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEec-------cchHHHHHHHHHHHHHhcCceEE
Q 007511 369 -----QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIK-------AGHSIHIAGLMRMDVEESSVESI 433 (601)
Q Consensus 369 -----~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllLD-------~~~~~~l~~lir~~~~~~g~tii 433 (601)
...+.+..++.. .++.+..||+||+||+++|+++ +|++++|| +.....+..++.....+ .+++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~--~~ii 157 (213)
T PRK15177 80 DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ--KGLI 157 (213)
T ss_pred CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC--CcEE
Confidence 122335556654 5778899999999999999999 99999994 45555666655433333 3344
Q ss_pred E-------EEEeecCEEEeecceecch
Q 007511 434 Y-------VTVWASPYLPLHMGKTENA 453 (601)
Q Consensus 434 ~-------~~~~ad~vl~l~~Gki~~a 453 (601)
. +..+||++++|++|++...
T Consensus 158 ~vsH~~~~~~~~~d~i~~l~~G~i~~~ 184 (213)
T PRK15177 158 VLTHNPRLIKEHCHAFGVLLHGKITMC 184 (213)
T ss_pred EEECCHHHHHHhcCeeEEEECCeEEEe
Confidence 2 3357999999999997543
No 321
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.64 E-value=1.7e-16 Score=179.69 Aligned_cols=170 Identities=13% Similarity=0.153 Sum_probs=127.3
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|.. +.+++++ ++.+++|+ ++++|+||+|||||+++|+|+++|.+|.+ ...++.+
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~i-nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSI-SLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCe-eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence 5778888888753 4689999 99998886 55599999999999999999999999965 2345679
Q ss_pred eEeeecCC--CCCceeeeeeecc--ccc--hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGV--LPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~--l~~--~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+|++|++. .+|-++|+.+... ... ..+.++..|+.. ....-..|||||+||+++||++ +|
T Consensus 409 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~ 488 (571)
T TIGR02203 409 ALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA 488 (571)
T ss_pred eEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999998 4444888875421 111 133444544432 1112356999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEE------EEEeecCEEEeecceecc
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIY------VTVWASPYLPLHMGKTEN 452 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~------~~~~ad~vl~l~~Gki~~ 452 (601)
++++| |+.....+...++.... +.|++. ....||+++.+++|++..
T Consensus 489 ~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 489 PILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 99998 78888888888876543 456663 335799999999998753
No 322
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.64 E-value=3.1e-16 Score=146.10 Aligned_cols=124 Identities=23% Similarity=0.279 Sum_probs=94.6
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccc-cceeEeeecCCCCCceeee
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAPVPGTTLGIV 360 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~-~~i~~v~qs~~pgtT~~~i 360 (601)
+.++.+.|+...+++++ ++.+.+|+++. +|+||+|||||+++|+|+.++.+|.+.... ..++|++|
T Consensus 3 ~~~l~~~~~~~~~l~~~-~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~----------- 70 (144)
T cd03221 3 LENLSKTYGGKLLLKDI-SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ----------- 70 (144)
T ss_pred EEEEEEEECCceEEEee-EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-----------
Confidence 34556667666789999 89999998765 999999999999999999999888542110 11222211
Q ss_pred eeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCce
Q 007511 361 RVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVE 431 (601)
Q Consensus 361 ~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~t 431 (601)
||+||+||+++|+++ +|+++++ |+.....+..+++.. +.+
T Consensus 71 ---------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~t 119 (144)
T cd03221 71 ---------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGT 119 (144)
T ss_pred ---------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCE
Confidence 999999999999999 9999999 777888888888764 245
Q ss_pred EEEEE-------EeecCEEEeecce
Q 007511 432 SIYVT-------VWASPYLPLHMGK 449 (601)
Q Consensus 432 ii~~~-------~~ad~vl~l~~Gk 449 (601)
++.++ .+||+++++++|+
T Consensus 120 il~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 120 VILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEEECCHHHHHHhCCEEEEEeCCC
Confidence 55333 4689999888775
No 323
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.64 E-value=1.7e-16 Score=175.74 Aligned_cols=169 Identities=21% Similarity=0.297 Sum_probs=124.0
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCccccc-cceeEeeecCC--CCCc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK-NIVSHLTEAPV--PGTT 356 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~-~~i~~v~qs~~--pgtT 356 (601)
+.+.++.+.||.+.|++++ ++.+.+|+ +.+||+||+||||||++|+|...|+.|.+.... -.++|+.|.+. +..|
T Consensus 4 i~~~~ls~~~g~~~l~~~~-~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 4 ITLENLSLAYGDRPLLENV-SLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred EEEeeeEEeeCCceeecCC-cceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCcc
Confidence 5678889999999999999 88888885 666999999999999999999999999876544 37899999887 3323
Q ss_pred -eeeeeeecc---------------c------------------------cchhhhhccCCCcCcCCccCCCCHHHHHHh
Q 007511 357 -LGIVRVEGV---------------L------------------------PAQAKLFDTPGLLHPNQITTRLTREEQKLV 396 (601)
Q Consensus 357 -~~~i~~~~~---------------l------------------------~~~~~llDtpGL~~~~~~~~~LSgGe~qrv 396 (601)
.+.+..... + .....++.-+|+...++.+..|||||+.||
T Consensus 83 v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv 162 (530)
T COG0488 83 VLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRV 162 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHH
Confidence 433221100 0 001356667788766889999999999999
Q ss_pred cccccc--CCCEEEe-ccchHHHHHHHHHHH---HHhcCceEE-------EEEEeecCEEEeecceec
Q 007511 397 NINKEL--KPRTYRI-KAGHSIHIAGLMRMD---VEESSVESI-------YVTVWASPYLPLHMGKTE 451 (601)
Q Consensus 397 ~iaraL--~P~lllL-D~~~~~~l~~lir~~---~~~~g~tii-------~~~~~ad~vl~l~~Gki~ 451 (601)
+||++| +|++|+| .|.+.+.+..+.+.. ....| +++ ++...|++++.++.|++.
T Consensus 163 ~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 163 ALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 999999 9999999 344444444333321 12234 555 344588999999999873
No 324
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.64 E-value=1.6e-16 Score=158.68 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=110.2
Q ss_pred ccCCcE-EEECCCCCchhHHHHHHhccccCCCCCcc-------ccccceeEeeecCC----CCCc-eeeeeeec-----c
Q 007511 304 GKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDG-------EEKNIVSHLTEAPV----PGTT-LGIVRVEG-----V 365 (601)
Q Consensus 304 ~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~-------~~~~~i~~v~qs~~----pgtT-~~~i~~~~-----~ 365 (601)
+.+|++ +++|+||+|||||+++|+|+.++++|.+. ..++.++|++|.+. ...| .+++.+.. .
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~ 82 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHIGW 82 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccccc
Confidence 456765 45999999999999999999999999652 12456899999763 2234 44443210 0
Q ss_pred c--c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHh
Q 007511 366 L--P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEE 427 (601)
Q Consensus 366 l--~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~ 427 (601)
. . ...++++..|+.. .++.+..||+||+||+++|++| +|+++++ |+..+..+..+++....+
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~ 162 (223)
T TIGR03771 83 LRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162 (223)
T ss_pred ccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc
Confidence 0 0 1245788889876 6778899999999999999999 9999999 889999999999987655
Q ss_pred cCceEEEE-------EEeecCEEEeecceec
Q 007511 428 SSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 428 ~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
+.+++.+ ..+||+++++ +|++.
T Consensus 163 -~~tvii~sH~~~~~~~~~d~i~~l-~G~i~ 191 (223)
T TIGR03771 163 -GTAILMTTHDLAQAMATCDRVVLL-NGRVI 191 (223)
T ss_pred -CCEEEEEeCCHHHHHHhCCEEEEE-CCEEE
Confidence 6677633 3578999999 68874
No 325
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.64 E-value=2e-16 Score=176.85 Aligned_cols=155 Identities=18% Similarity=0.153 Sum_probs=120.8
Q ss_pred ccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCccc-------------cccceeEeeecC-----CCCC
Q 007511 295 LIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGE-------------EKNIVSHLTEAP-----VPGT 355 (601)
Q Consensus 295 LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~-------------~~~~i~~v~qs~-----~pgt 355 (601)
+++++ ++.+.+|+++ ++|+||||||||+++|+|+.+|++|.+.. .+..++|++|.+ .+..
T Consensus 278 ~l~~i-sl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 278 GFRNI-SLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred Cccce-eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 58888 8888999765 59999999999999999999999996521 124689999873 2544
Q ss_pred c-eeeeeee------cccc-c-----hhhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------cc
Q 007511 356 T-LGIVRVE------GVLP-A-----QAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KA 411 (601)
Q Consensus 356 T-~~~i~~~------~~l~-~-----~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~ 411 (601)
| .+++... .... . ..++++.+|+. . .++.+..||||||||++||++| +|++++| |+
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~ 436 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence 5 4544210 0001 1 13678889996 4 7888999999999999999999 9999999 89
Q ss_pred chHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 412 GHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 412 ~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
..+..+..+++.+..+ |.+++. +..+||++++|++|++.
T Consensus 437 ~~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~~G~i~ 482 (510)
T PRK15439 437 SARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEIS 482 (510)
T ss_pred hHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999988765 666663 44689999999999875
No 326
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.64 E-value=1e-15 Score=173.87 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=126.4
Q ss_pred eEEEEEeEeecCC-ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc------------ccccccee
Q 007511 280 KLHFVSAVKNWGL-KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G~-~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~ 345 (601)
.+.+.++...|+. +.+++++ ++.+++|+.+ ++|+||+|||||+++|+|+.+|++|.+ ...++.++
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i-~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDV-SFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred eEEEEEEEEECCCCCccccce-eEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 4777888888865 4689999 9999988755 499999999999999999999999965 12456799
Q ss_pred EeeecCC--CCCceeeeeeeccccch---hh----------hhccC-CCcC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 346 HLTEAPV--PGTTLGIVRVEGVLPAQ---AK----------LFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 346 ~v~qs~~--pgtT~~~i~~~~~l~~~---~~----------llDtp-GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
+++|++. ++|.++|+.+....... .. +.+.| |+.. .......|||||+||+++||+| +|++
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999987 55558888764211111 11 12233 3332 3344678999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++| |+.....+.+.++... + +.|++.++ ..||+++++++|++.
T Consensus 493 lilDEpts~LD~~~~~~i~~~l~~~~-~-~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 493 LVLDEATSALDVETEARVKNAIDALR-K-NRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 999 7778888888887653 2 56666333 368999999999974
No 327
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.64 E-value=8.7e-16 Score=177.86 Aligned_cols=170 Identities=14% Similarity=0.159 Sum_probs=127.5
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|+. +.+++++ ++.+++|+ ++++|+||+|||||+++|+|++.|++|.+ ...++.+
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i-~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNL-NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred eEEEEEEEEEcCCCCccccccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 4777888888853 4589999 99999886 55599999999999999999999999954 2346779
Q ss_pred eEeeecCC--CCCceeeeeeeccccch---hhhhccC-----------CCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPAQ---AKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~~---~~llDtp-----------GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++++|.+. ++|-++|+.+....... .+.++.. |+.. .......|||||+||+++||++ +|+
T Consensus 534 ~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ 613 (694)
T TIGR01846 534 GVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPR 613 (694)
T ss_pred eEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 99999987 66558888763211111 2223333 3332 2233567999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
+++| |+.....+.+.++... . +.|++.++ ..||+++++++|++..
T Consensus 614 ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~ii~l~~G~i~~ 671 (694)
T TIGR01846 614 ILIFDEATSALDYESEALIMRNMREIC-R-GRTVIIIAHRLSTVRACDRIIVLEKGQIAE 671 (694)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCChHHHHhCCEEEEEeCCEEEE
Confidence 9999 7778888888888763 2 56666332 3689999999999843
No 328
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.63 E-value=2.9e-15 Score=138.92 Aligned_cols=137 Identities=26% Similarity=0.408 Sum_probs=96.9
Q ss_pred HHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHH
Q 007511 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (601)
Q Consensus 189 ~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~ 268 (601)
.+..+++.+|+|++|+|++++..+.+..+.+++... .. + .|+++|+||+||+++ ..+..|...
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~--------~~----~-k~~iivlNK~DL~~~----~~~~~~~~~ 66 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV--------DP----R-KKNILLLNKADLLTE----EQRKAWAEY 66 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc--------cC----C-CcEEEEEechhcCCH----HHHHHHHHH
Confidence 455667789999999999999888887888877531 01 2 379999999999753 345566554
Q ss_pred HHHHcCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEee
Q 007511 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT 348 (601)
Q Consensus 269 ~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~ 348 (601)
+ +..+ ..++.+|+..+.+ .++++|.+|+|||||+|+|++... ..
T Consensus 67 ~-~~~~----~~ii~iSa~~~~~----------------~~~~~G~~~vGKstlin~l~~~~~---------------~~ 110 (141)
T cd01857 67 F-KKEG----IVVVFFSALKENA----------------TIGLVGYPNVGKSSLINALVGKKK---------------VS 110 (141)
T ss_pred H-HhcC----CeEEEEEecCCCc----------------EEEEECCCCCCHHHHHHHHhCCCc---------------ee
Confidence 3 3333 3578888876543 578899999999999999997432 12
Q ss_pred ecCCCCCceeeeeeeccccchhhhhccCCCcC
Q 007511 349 EAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (601)
Q Consensus 349 qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~ 380 (601)
.+..+|+|.....+. +.....++||||+..
T Consensus 111 ~~~~~~~~~~~~~~~--~~~~~~i~DtpG~~~ 140 (141)
T cd01857 111 VSATPGKTKHFQTIF--LTPTITLCDCPGLVF 140 (141)
T ss_pred eCCCCCcccceEEEE--eCCCEEEEECCCcCC
Confidence 344477775544432 334568999999863
No 329
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.63 E-value=9.3e-16 Score=172.24 Aligned_cols=162 Identities=17% Similarity=0.208 Sum_probs=119.6
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|+. +.+++++ ++.+++|+. +++|+||+|||||+|+|+|+++|+.|.+ ...++.+
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i-~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPV-SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCCCcccccce-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 5788888888865 3599999 999999965 5599999999999999999999999955 2346679
Q ss_pred eEeeecCC--CCCceeeeeeeccccc---hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA---QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~---~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++++|.+. ++|.++|+.+...... ..+.++..|+.+ .......|||||+||+++||++ +|+
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999987 6655888876422111 123344444422 2223567999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEEE------eecCEEE
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVTV------WASPYLP 444 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~~------~ad~vl~ 444 (601)
+++| |+.....+.+.++... .+.|++.+++ .||++++
T Consensus 479 ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~~ 528 (529)
T TIGR02857 479 LLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALAERADRIVV 528 (529)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHHHhCCEEEe
Confidence 9998 7888888888887654 2566664433 4555554
No 330
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.63 E-value=6.2e-16 Score=175.36 Aligned_cols=170 Identities=14% Similarity=0.199 Sum_probs=126.4
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccc
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNI 343 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~ 343 (601)
.+.+.++...|.. +.+++++ ++.+++|+ ++++|+||+|||||+++|+|+++|..|.+ ...++.
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~i-nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGL-NLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred eEEEEEEEEECCCCCCCccccce-eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 4777888888853 4589999 99999996 55599999999999999999999999965 223567
Q ss_pred eeEeeecCC--CCCceeeeeeeccccc---hhhhhccCCC-----------cC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 344 VSHLTEAPV--PGTTLGIVRVEGVLPA---QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 344 i~~v~qs~~--pgtT~~~i~~~~~l~~---~~~llDtpGL-----------~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+++++|.+. ++|-++|+.+...-.. ..+.++..|+ .. .......|||||+||+++||++ +|
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 999999998 6666888876321111 1223333333 22 1233567999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
++++| |+.....+...++... + +.|++.++ ..+|+++.+++|++..
T Consensus 496 ~ililDEpts~lD~~~~~~i~~~l~~~~-~-~~t~IiitH~~~~~~~~d~vi~l~~g~~~~ 554 (576)
T TIGR02204 496 PILLLDEATSALDAESEQLVQQALETLM-K-GRTTLIIAHRLATVLKADRIVVMDQGRIVA 554 (576)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHHh-C-CCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence 99999 7777777888777654 2 45666433 4789999999999753
No 331
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.63 E-value=1e-15 Score=158.19 Aligned_cols=166 Identities=17% Similarity=0.172 Sum_probs=116.5
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCc
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTT 356 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT 356 (601)
.+.+.++... ...+++++ ++.+.+|++++ +|+||+|||||+++|+|+++|.+|.+.. ...++|++|.+. +.+.
T Consensus 39 ~l~i~nls~~--~~~vL~~v-s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i-~g~i~yv~q~~~l~~~tv 114 (282)
T cd03291 39 NLFFSNLCLV--GAPVLKNI-NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH-SGRISFSSQFSWIMPGTI 114 (282)
T ss_pred eEEEEEEEEe--cccceeee-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-CCEEEEEeCcccccccCH
Confidence 3555555543 25689999 99999997655 9999999999999999999999997643 235899999876 5444
Q ss_pred eeeeeeeccccc--hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccch
Q 007511 357 LGIVRVEGVLPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGH 413 (601)
Q Consensus 357 ~~~i~~~~~l~~--~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~ 413 (601)
.+++.+...... ...+++..++.. .++.+..||+||+||+++|++| +|++++| |+..
T Consensus 115 ~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~ 194 (282)
T cd03291 115 KENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194 (282)
T ss_pred HHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 676654321111 122333334321 1233578999999999999999 9999999 7777
Q ss_pred HHHHHHHH-HHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 414 SIHIAGLM-RMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 414 ~~~l~~li-r~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
...+...+ +.. .+ +.+++.++ ..||++++|++|++.
T Consensus 195 ~~~l~~~ll~~~-~~-~~tIiiisH~~~~~~~~d~i~~l~~G~i~ 237 (282)
T cd03291 195 EKEIFESCVCKL-MA-NKTRILVTSKMEHLKKADKILILHEGSSY 237 (282)
T ss_pred HHHHHHHHHHHh-hC-CCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 77777654 333 33 45665222 368999999999973
No 332
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.63 E-value=3e-15 Score=155.25 Aligned_cols=152 Identities=28% Similarity=0.361 Sum_probs=110.9
Q ss_pred HHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHH
Q 007511 187 GRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV 266 (601)
Q Consensus 187 ~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~ 266 (601)
.+++...++.+|+|++|+|++++..+.++.+.+++. + .|+++|+||+||.+. ..+..|.
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----------------~-kp~iiVlNK~DL~~~----~~~~~~~ 73 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----------------N-KPRLLILNKSDLADP----EVTKKWI 73 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----------------C-CCEEEEEEchhcCCH----HHHHHHH
Confidence 456778888999999999999998888777766543 1 279999999999753 3456786
Q ss_pred HHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcc-------------cCCcEEEECCCCCchhHHHHHHhccccCC
Q 007511 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG-------------KRGNVWAIGAQNAGKSTLLNAIAKSVDAG 333 (601)
Q Consensus 267 ~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~-------------~~G~v~ivG~nGaGKSTLLn~L~g~~~~~ 333 (601)
..+ +..+ ..++.+|+.++.|...+++.+..+.. ..-.++++|.+|+|||||||+|.|...
T Consensus 74 ~~~-~~~~----~~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~-- 146 (287)
T PRK09563 74 EYF-EEQG----IKALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKI-- 146 (287)
T ss_pred HHH-HHcC----CeEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCc--
Confidence 654 2333 35788999999998888776644321 112577899999999999999997432
Q ss_pred CCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCc
Q 007511 334 RGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (601)
Q Consensus 334 ~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~ 381 (601)
+..++.||+|.....+. +.....++||||+..+
T Consensus 147 -------------~~~~~~~g~T~~~~~~~--~~~~~~l~DtPGi~~~ 179 (287)
T PRK09563 147 -------------AKTGNRPGVTKAQQWIK--LGKGLELLDTPGILWP 179 (287)
T ss_pred -------------cccCCCCCeEEEEEEEE--eCCcEEEEECCCcCCC
Confidence 23355689997665443 3445789999999754
No 333
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.63 E-value=3.8e-16 Score=173.82 Aligned_cols=167 Identities=15% Similarity=0.110 Sum_probs=124.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-------------cccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-------------EKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-------------~~~~i~~ 346 (601)
+.+.++.+.+ +.+++++ ++.+..|++++ +|+||||||||+++|+|+.+|++|.+.. .++.++|
T Consensus 251 i~~~~l~~~~--~~~l~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 327 (491)
T PRK10982 251 LEVRNLTSLR--QPSIRDV-SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFAL 327 (491)
T ss_pred EEEeCccccc--Cccccee-eEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEE
Confidence 3444554442 4589999 89999997655 9999999999999999999999996521 1234788
Q ss_pred eeecCC-----CCCc-e-----eeeeeecc----ccc------hhhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc-
Q 007511 347 LTEAPV-----PGTT-L-----GIVRVEGV----LPA------QAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 347 v~qs~~-----pgtT-~-----~~i~~~~~----l~~------~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++|.+. +..| . +++..... ... ..++++.+|+. . .++.+..|||||||||++|+++
T Consensus 328 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 407 (491)
T PRK10982 328 VTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLL 407 (491)
T ss_pred cCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHh
Confidence 888642 4333 2 21211100 111 14577888885 3 6889999999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++.+..+ +.+++. +..+||++++|++|++.
T Consensus 408 ~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 408 TQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred cCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 9999999 899999999999887766 667763 44689999999999874
No 334
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.63 E-value=7e-16 Score=173.24 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=113.7
Q ss_pred eEEEEEeEeecCC-ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeE
Q 007511 280 KLHFVSAVKNWGL-KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSH 346 (601)
Q Consensus 280 ~V~lvSa~kg~G~-~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~ 346 (601)
.|.+.++..+|+. +.+++++ ++.+++|+. ++||+||||||||+|.|+|+++|++|.+. ..++.+++
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~i-sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGV-SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred eEEEEEEEEecCCCCceeecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence 5778888888865 4689999 999999964 55999999999999999999999999652 23468999
Q ss_pred eeecCC--CCCceeeeeeeccccc---hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEE
Q 007511 347 LTEAPV--PGTTLGIVRVEGVLPA---QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTY 407 (601)
Q Consensus 347 v~qs~~--pgtT~~~i~~~~~l~~---~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~ll 407 (601)
++|++. ++|-++|+.+...-.. ..+.++..|+.+ -......|||||+||+++|||+ +|+++
T Consensus 413 V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il 492 (529)
T TIGR02868 413 FAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 492 (529)
T ss_pred EccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999998 6666999887421111 133455555432 1122356999999999999999 99999
Q ss_pred Ee-------ccchHHHHHHHHHHHHHhcCceEEEE
Q 007511 408 RI-------KAGHSIHIAGLMRMDVEESSVESIYV 435 (601)
Q Consensus 408 lL-------D~~~~~~l~~lir~~~~~~g~tii~~ 435 (601)
+| |+.....+...++... .+.|++.+
T Consensus 493 iLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiI 525 (529)
T TIGR02868 493 LLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVI 525 (529)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEE
Confidence 98 6777777777776542 24565543
No 335
>PLN03130 ABC transporter C family member; Provisional
Probab=99.62 E-value=1e-15 Score=189.96 Aligned_cols=170 Identities=16% Similarity=0.249 Sum_probs=128.8
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.|.+.++..+|.. ..+|+++ ++.+++|+ |++||+||||||||+++|+|++.|.+|.+ ...|+++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~i-s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGL-SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 5888888888854 3699999 99999885 67799999999999999999999999954 3457889
Q ss_pred eEeeecCC--CCCceeeeeeeccccc--hhhhhccCCC-----------cC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA--QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~--~~~llDtpGL-----------~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
++++|++. .||-++|+........ ..+.++..|+ .. .......||||||||++||||| +|++
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999997 7766888875322111 1233344333 22 2223457999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
++| |......+...++.... +.|++.++ ..||++++|++|++.+
T Consensus 1396 LILDEATSaLD~~Te~~Iq~~I~~~~~--~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE 1452 (1622)
T PLN03130 1396 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILVLDAGRVVE 1452 (1622)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 999 66666778888876643 46666333 3589999999999844
No 336
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.62 E-value=1.1e-15 Score=173.01 Aligned_cols=169 Identities=16% Similarity=0.185 Sum_probs=124.8
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|+. ..+++++ ++.+++|+.+ ++|+||+|||||+++|+|+++|++|.+ ...++.+
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i-~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENV-NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred cEEEEEEEEECCCCCCccccCe-eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 4666666677743 4689999 9999999755 599999999999999999999999965 1335679
Q ss_pred eEeeecCC--CCCceeeeeeeccccc---hhhhhccCCC-----------cC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA---QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~---~~~llDtpGL-----------~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++++|.+. ++|-++|+.+...-.. ....++..|+ .. .+.....|||||+||+++||++ +|+
T Consensus 392 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 392 AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471 (569)
T ss_pred EEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999987 5655888865421111 1223333333 21 2234567999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
+++| |+.....+...++... + +.|++.++ ..||+++++++|++.
T Consensus 472 illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tii~itH~~~~~~~~d~i~~l~~G~i~ 528 (569)
T PRK10789 472 ILILDDALSAVDGRTEHQILHNLRQWG-E-GRTVIISAHRLSALTEASEILVMQHGHIA 528 (569)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEecchhHHHcCCEEEEEeCCEEE
Confidence 9999 7778888888887654 3 56666333 368999999999974
No 337
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.62 E-value=4e-16 Score=159.07 Aligned_cols=160 Identities=20% Similarity=0.144 Sum_probs=112.8
Q ss_pred EeEeecCCc-cccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCcc-----------c-----------c
Q 007511 285 SAVKNWGLK-SLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDG-----------E-----------E 340 (601)
Q Consensus 285 Sa~kg~G~~-~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~-----------~ 340 (601)
++.+.|+.. .+++++ +. +.+|++ +++|+||||||||+++|+|+.+|++|.+. . .
T Consensus 5 ~~~~~y~~~~~~l~~i-~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 5 EPVHRYGPNSFKLHRL-PV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred CcceeecCcchhhhcC-CC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 445666654 478888 54 677765 55999999999999999999999999762 0 0
Q ss_pred c---cceeEeeecCC--CCCceeeeeeeccc----cchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 341 K---NIVSHLTEAPV--PGTTLGIVRVEGVL----PAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 341 ~---~~i~~v~qs~~--pgtT~~~i~~~~~l----~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
. ..+++++|... |.++.+++...... ....++++.+|+.. .++.+..||+||+||+++|+++ +|++++
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ill 162 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYF 162 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 0 12345554332 32222222211110 11256788889876 6778899999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHM 447 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~ 447 (601)
+ |+.....+..+++....+ +.+++.++ .+||+++.++.
T Consensus 163 lDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 163 FDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEECC
Confidence 9 788888899999987665 56666433 47899998863
No 338
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.61 E-value=5.8e-16 Score=177.37 Aligned_cols=165 Identities=20% Similarity=0.259 Sum_probs=120.4
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCcccccc-ceeEeeecCC--C-CC
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN-IVSHLTEAPV--P-GT 355 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~-~i~~v~qs~~--p-gt 355 (601)
+.+.++.+.|+...+++++ ++.+.+|++ +++|+|||||||||++|+|+..|++|.+..... .+++++|.+. . ++
T Consensus 4 l~i~~ls~~~~~~~il~~i-s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~ 82 (635)
T PRK11147 4 ISIHGAWLSFSDAPLLDNA-ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGT 82 (635)
T ss_pred EEEeeEEEEeCCceeEeCc-EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCC
Confidence 4567788888888899999 999999865 559999999999999999999999997643221 2456655432 1 11
Q ss_pred ceeeee------------------------------eecc-------c------cchhhhhccCCCcCcCCccCCCCHHH
Q 007511 356 TLGIVR------------------------------VEGV-------L------PAQAKLFDTPGLLHPNQITTRLTREE 392 (601)
Q Consensus 356 T~~~i~------------------------------~~~~-------l------~~~~~llDtpGL~~~~~~~~~LSgGe 392 (601)
..+.+. .... . .....+++.+|+. .++.+..|||||
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSgGe 161 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSGGW 161 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCHHH
Confidence 111100 0000 0 0114567788886 478899999999
Q ss_pred HHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 393 QKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 393 ~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+|||+||++| +|++++| |+.....+..+++.. . .+++. +..+||+++.|++|++.
T Consensus 162 kqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~--~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 162 LRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--Q--GSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--C--CEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999 9999999 788888888888765 2 35553 33578999999999874
No 339
>PLN03232 ABC transporter C family member; Provisional
Probab=99.61 E-value=1.5e-15 Score=188.10 Aligned_cols=170 Identities=15% Similarity=0.228 Sum_probs=128.7
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.|.+.++..+|.. ..+++++ ++.+++|+ +++||+||||||||+++|+|++.|++|.+ ...++.+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~i-sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGL-SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 5888888888843 4699999 99999885 66699999999999999999999999955 3457789
Q ss_pred eEeeecCC--CCCceeeeeeeccccc--hhhhhccCCCc-----------C-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA--QAKLFDTPGLL-----------H-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~--~~~llDtpGL~-----------~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
++++|++. +||-++|+........ ..+.++..|+. . .......||||||||++||||| +|++
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 99999998 7766888875322111 12334444442 2 2223457999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
++| |......+...++.... +.|++.++ ..||++++|++|++.+
T Consensus 1393 LILDEATSaLD~~Te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1393 LVLDEATASVDVRTDSLIQRTIREEFK--SCTMLVIAHRLNTIIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999 56666777777776543 46666333 3689999999999854
No 340
>PLN03232 ABC transporter C family member; Provisional
Probab=99.61 E-value=9e-16 Score=190.01 Aligned_cols=170 Identities=14% Similarity=0.214 Sum_probs=126.7
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--C
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--P 353 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--p 353 (601)
.|.+.++...|+. ..+++++ ++.+++|+ ++++|++|||||||+++|+|++++.+|++...+..++|++|.++ .
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~i-nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDI-NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence 4777888888864 4689999 99999996 55599999999999999999999999988778889999999998 6
Q ss_pred CCceeeeeeeccccch--hhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEEEe-------c
Q 007511 354 GTTLGIVRVEGVLPAQ--AKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTYRI-------K 410 (601)
Q Consensus 354 gtT~~~i~~~~~l~~~--~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D 410 (601)
+|-++|+.+....... .++++..++.. -...-..||||||||++||||+ +|++++| |
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 6559999875332221 33444444421 1122456999999999999999 9999999 5
Q ss_pred cchHHHHH-HHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 411 AGHSIHIA-GLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 411 ~~~~~~l~-~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
+....++. .+++.. .+ +.|++.++ ..||++++|++|++..
T Consensus 773 ~~t~~~I~~~~l~~~-l~-~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~ 819 (1495)
T PLN03232 773 AHVAHQVFDSCMKDE-LK-GKTRVLVTNQLHFLPLMDRIILVSEGMIKE 819 (1495)
T ss_pred HHHHHHHHHHHhhhh-hc-CCEEEEEECChhhHHhCCEEEEEeCCEEEE
Confidence 55555454 334332 22 56666433 4689999999999743
No 341
>PRK13409 putative ATPase RIL; Provisional
Probab=99.61 E-value=6e-16 Score=175.05 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=114.8
Q ss_pred eEeecCCc-cccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc-----------c-------------
Q 007511 286 AVKNWGLK-SLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG-----------E------------- 339 (601)
Q Consensus 286 a~kg~G~~-~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~------------- 339 (601)
..++||.+ .+|.++ + .+.+|+++ ++|+||+|||||+++|+|+++|+.|.+. .
T Consensus 79 ~~~~yg~~~~~L~~l-~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 79 PVHRYGVNGFKLYGL-P-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred ceEEecCCceeEecC-C-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 45677764 478888 5 57788765 4999999999999999999999999763 1
Q ss_pred -cccceeEeeecCC--C----CCceeeeeeeccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 340 -EKNIVSHLTEAPV--P----GTTLGIVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 340 -~~~~i~~v~qs~~--p----gtT~~~i~~~~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
....+++.+|... | ++..+++..........++++.+|+.. .++.+..|||||+||++||++| +|++|+|
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllL 236 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFF 236 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0112344444321 2 222343322100112357888999976 7889999999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeec
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHM 447 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~ 447 (601)
|+.++..+..+++.+.. +.+++.+ ..+||++++++.
T Consensus 237 DEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 237 DEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 88889999999998764 5666633 357899999976
No 342
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.61 E-value=5.2e-16 Score=177.09 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=124.5
Q ss_pred CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC---CCCc---------cccccceeEeeecCC--CCC
Q 007511 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---RGGD---------GEEKNIVSHLTEAPV--PGT 355 (601)
Q Consensus 291 G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~---~G~i---------~~~~~~i~~v~qs~~--pgt 355 (601)
+.+.+++++ ++.+.+|++++ +|+|||||||||++|+|..++. +|++ ...++.++|++|.+. |..
T Consensus 36 ~~~~iL~~v-s~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 36 PRKHLLKNV-SGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred CccccccCC-EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 356789999 99999997555 9999999999999999998774 4543 123457899999986 666
Q ss_pred c-eeeeeeecccc--c----------hhhhhccCCCcC-cCCccC------CCCHHHHHHhcccccc--CCCEEEe----
Q 007511 356 T-LGIVRVEGVLP--A----------QAKLFDTPGLLH-PNQITT------RLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 356 T-~~~i~~~~~l~--~----------~~~llDtpGL~~-~~~~~~------~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
| .+++.+...+. . ..++++.+|+.+ .+..++ .||||||||++||++| +|++++|
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 7 77776532211 1 256889999976 555554 5999999999999999 9999999
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEEE--------EEeecCEEEeecceec
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIYV--------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~~--------~~~ad~vl~l~~Gki~ 451 (601)
|...+..+...++....+ |.|++.. ..++|++++|++|++.
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v 246 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEGRVA 246 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeCCeEE
Confidence 888999999999988765 6676622 3478999999999873
No 343
>PLN03073 ABC transporter F family; Provisional
Probab=99.61 E-value=9.1e-16 Score=176.81 Aligned_cols=166 Identities=15% Similarity=0.127 Sum_probs=122.7
Q ss_pred EEEEEeEeecCC-ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCcccc-ccceeEeeecCCCCCc-
Q 007511 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPVPGTT- 356 (601)
Q Consensus 281 V~lvSa~kg~G~-~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~-~~~i~~v~qs~~pgtT- 356 (601)
+.+.++.+.|+. ..+++++ ++.+..|++ +++|+|||||||||++|+|+.+|+.|.+... +..++|++|...++.+
T Consensus 509 L~~~~ls~~y~~~~~il~~v-sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~ 587 (718)
T PLN03073 509 ISFSDASFGYPGGPLLFKNL-NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDL 587 (718)
T ss_pred EEEEeeEEEeCCCCeeEecc-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCc
Confidence 556778888853 4689999 999999865 5599999999999999999999999977432 3468999998654433
Q ss_pred eeeeeeec--ccc-----chhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHH
Q 007511 357 LGIVRVEG--VLP-----AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIA 418 (601)
Q Consensus 357 ~~~i~~~~--~l~-----~~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~ 418 (601)
..+..... ... ....+++.+|+.. .++.+..|||||+||++||+++ +|++++| |+.....+.
T Consensus 588 ~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~ 667 (718)
T PLN03073 588 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALI 667 (718)
T ss_pred chhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 22211100 010 1246788899963 5788999999999999999999 9999999 666666666
Q ss_pred HHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 419 GLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 419 ~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
..+... . + +++.+ ..+||+++++++|++.
T Consensus 668 ~~L~~~--~-g-tvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 668 QGLVLF--Q-G-GVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred HHHHHc--C-C-EEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 555432 2 4 56533 3478999999999875
No 344
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=3.9e-16 Score=153.79 Aligned_cols=159 Identities=18% Similarity=0.157 Sum_probs=117.7
Q ss_pred ecCCccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCccccccceeEe---eecCCCCCc-eeeeeee
Q 007511 289 NWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL---TEAPVPGTT-LGIVRVE 363 (601)
Q Consensus 289 g~G~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v---~qs~~pgtT-~~~i~~~ 363 (601)
......+|++| ++.+.+|+ +.+||.||||||||+++|+|.++|++|.+... .+++.+ .+...|.+| ++|+.+.
T Consensus 36 ~~~~~~aL~di-sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~-G~v~~li~lg~Gf~pelTGreNi~l~ 113 (249)
T COG1134 36 KVAEFWALKDI-SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVT-GKVAPLIELGAGFDPELTGRENIYLR 113 (249)
T ss_pred CcceEEEecCc-eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEc-ceEehhhhcccCCCcccchHHHHHHH
Confidence 33445689999 99999886 56699999999999999999999999975322 222222 123337888 8888765
Q ss_pred ccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHH
Q 007511 364 GVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMD 424 (601)
Q Consensus 364 ~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~ 424 (601)
+.+.+ ..+++|-.+|.+ .++++..+|.||+-|++.+-+. +|++|++ |+.-...-...+...
T Consensus 114 ~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 114 GLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 44332 156777777776 7889999999999999988887 9999999 444444445555555
Q ss_pred HHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 425 VEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 425 ~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
..+ +.+++. +..+||+.+.|+.|++
T Consensus 194 ~~~-~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i 225 (249)
T COG1134 194 VEK-NKTIVLVSHDLGAIKQYCDRAIWLEHGQI 225 (249)
T ss_pred HHc-CCEEEEEECCHHHHHHhcCeeEEEeCCEE
Confidence 455 566664 3469999999999987
No 345
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.60 E-value=1.2e-15 Score=158.43 Aligned_cols=163 Identities=17% Similarity=0.241 Sum_probs=125.2
Q ss_pred ecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCC-----CCCc----------------cccccceeE
Q 007511 289 NWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAG-----RGGD----------------GEEKNIVSH 346 (601)
Q Consensus 289 g~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~-----~G~i----------------~~~~~~i~~ 346 (601)
..+..+++++| ++.+..|++. +||.+|+|||-..++++++++.. +|.+ .....+|++
T Consensus 19 ~~~~~~aVk~i-sf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~M 97 (534)
T COG4172 19 EGGTVEAVKGI-SFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGM 97 (534)
T ss_pred CCcceEeeccc-eeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEE
Confidence 34567889999 9999999754 59999999999999999998541 2222 112357999
Q ss_pred eeecCC----CCCceee-eeeecc----ccc------hhhhhccCCCcC----cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 347 LTEAPV----PGTTLGI-VRVEGV----LPA------QAKLFDTPGLLH----PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 347 v~qs~~----pgtT~~~-i~~~~~----l~~------~~~llDtpGL~~----~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
+||.|+ |-.|.+. +..... +.. ..++++..||.. .+.++++|||||+|||+||.|| +|+
T Consensus 98 IFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~ 177 (534)
T COG4172 98 IFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPD 177 (534)
T ss_pred EecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCC
Confidence 999986 4334221 111111 111 157899999986 6789999999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
+++. |..-+..|.++++.+..+.|..+++++ .+||++.+|..|++.+
T Consensus 178 lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 178 LLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred eEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee
Confidence 9997 777788999999999988898888554 5999999999999844
No 346
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.60 E-value=2.4e-16 Score=149.58 Aligned_cols=167 Identities=18% Similarity=0.242 Sum_probs=132.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc--------------ccccccee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD--------------GEEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i--------------~~~~~~i~ 345 (601)
+.+.+++..+|.-..++++ ++.+..|+.-+ ||||||||||++.+|+|..+|+.|.+ ...+..||
T Consensus 6 L~~~~vsVsF~GF~Aln~l-s~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIG 84 (249)
T COG4674 6 LYLDGVSVSFGGFKALNDL-SFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIG 84 (249)
T ss_pred EEEeceEEEEcceeeeeee-EEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccC
Confidence 4456777889999999999 99999998755 99999999999999999999999854 23455688
Q ss_pred EeeecCC--CCCc-eeeeeeeccccc-----------------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVLPA-----------------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l~~-----------------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
.-||.|. ...| .+|+.+....+. ..+++.+.||.+ .++.+..||.||+|++.|...+
T Consensus 85 RKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q 164 (249)
T COG4674 85 RKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQ 164 (249)
T ss_pred ccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeecc
Confidence 8888875 6666 777665322111 157889999987 7888999999999999999998
Q ss_pred CCCEEEec-------cchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeeccee
Q 007511 403 KPRTYRIK-------AGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKT 450 (601)
Q Consensus 403 ~P~lllLD-------~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki 450 (601)
+|++++|| ...+...+.+++.++.. .+++ ++..+|+++-+||.|.+
T Consensus 165 ~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~--hsilVVEHDM~Fvr~~A~~VTVlh~G~V 224 (249)
T COG4674 165 DPKLLLLDEPVAGMTDAETEKTAELLKSLAGK--HSILVVEHDMGFVREIADKVTVLHEGSV 224 (249)
T ss_pred CCcEEEecCccCCCcHHHHHHHHHHHHHHhcC--ceEEEEeccHHHHHHhhheeEEEeccce
Confidence 99999994 34567778888887755 3444 45678999999999986
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.60 E-value=2.7e-15 Score=184.55 Aligned_cols=170 Identities=11% Similarity=0.170 Sum_probs=125.6
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccC-----------------------
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDA----------------------- 332 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~----------------------- 332 (601)
+|.+.++...|.. ..+++++ ++.+++|+ +++||+||||||||++.|+|++.|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~l-sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDL-TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCe-eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 5888899999952 4699999 99999986 555999999999999999999998
Q ss_pred -------------------------------CCCCc------------cccccceeEeeecCC--CCCceeeeeeecccc
Q 007511 333 -------------------------------GRGGD------------GEEKNIVSHLTEAPV--PGTTLGIVRVEGVLP 367 (601)
Q Consensus 333 -------------------------------~~G~i------------~~~~~~i~~v~qs~~--pgtT~~~i~~~~~l~ 367 (601)
+.|.+ ...++.+++|+|.+. ++|-++|+.+...-.
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~a 1323 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDA 1323 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCC
Confidence 46744 345778999999998 666699988752211
Q ss_pred ch---hhhhccCCCc-----------C-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHH
Q 007511 368 AQ---AKLFDTPGLL-----------H-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRM 423 (601)
Q Consensus 368 ~~---~~llDtpGL~-----------~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~ 423 (601)
.. .+.++..|+. . -......|||||+||++||||| +|++|+| |......+...+..
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 11 2233333332 1 1223456999999999999999 9999999 66666777777766
Q ss_pred HHHhcCceEEEEE------EeecCEEEeec----cee
Q 007511 424 DVEESSVESIYVT------VWASPYLPLHM----GKT 450 (601)
Q Consensus 424 ~~~~~g~tii~~~------~~ad~vl~l~~----Gki 450 (601)
.....+.|++.++ ..||++++|++ |++
T Consensus 1404 ~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~i 1440 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSF 1440 (1466)
T ss_pred HhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCE
Confidence 5422256666443 47899999998 873
No 348
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.5e-15 Score=163.23 Aligned_cols=170 Identities=19% Similarity=0.200 Sum_probs=128.9
Q ss_pred eEEEEEeEeecCCcc--ccchhhhhcccCC-cEEEECCCCCchhHHHHHHhccccCCCCCcc------------ccccce
Q 007511 280 KLHFVSAVKNWGLKS--LIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~--LL~~I~~l~~~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i 344 (601)
.+.+.+++..|..++ +++++ ++.+..| +|+++|++|||||||++.|.|...|+.|++. ..+..+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~-~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i 414 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNF-NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETI 414 (573)
T ss_pred eeeeccceeecCCCccchhhcc-ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHH
Confidence 356677777776654 99999 8888888 5888999999999999999999999999651 134578
Q ss_pred eEeeecCC-CCCc-eeeeeeeccccc---hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV-PGTT-LGIVRVEGVLPA---QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~-pgtT-~~~i~~~~~l~~---~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++++|+.. -..| ++|+.....-.. ..++++..|+.+ .+.--..|||||+||++|||+| +..
T Consensus 415 ~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap 494 (573)
T COG4987 415 SVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP 494 (573)
T ss_pred hhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence 88999887 3344 888876432211 134555555543 2333567999999999999999 888
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
+++| |+.....+..++..... +.|++.++ ..+|+++++.+|++..
T Consensus 495 l~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le~~drIivl~~Gkiie 552 (573)
T COG4987 495 LWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLERMDRIIVLDNGKIIE 552 (573)
T ss_pred eEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHhhcCEEEEEECCeeee
Confidence 9988 88888899988887654 56677544 4789999999999843
No 349
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.60 E-value=3e-15 Score=185.73 Aligned_cols=170 Identities=15% Similarity=0.194 Sum_probs=127.9
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.|.+.++...|.. ..+|+++ ++.+++|+ +++||++|||||||+++|+|++.|.+|.+ ...|+.+
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~i-s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHI-NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 5888888888854 4699999 99999885 66699999999999999999999999954 3457889
Q ss_pred eEeeecCC--CCCceeeeeeeccccc--hhhhhccCCCc-----------C-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA--QAKLFDTPGLL-----------H-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~--~~~llDtpGL~-----------~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
++++|++. +||-++|+........ ..+.++..|+. . -......||||||||++||||| +|++
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 99999998 7766888863222211 12334444432 1 1223356999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
++| |......+...++.... +.|++.++ ..+|++++|++|++.+
T Consensus 1443 LiLDEaTSalD~~Te~~Iq~~l~~~~~--~~TvI~IAHRl~ti~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1443 LVLDEATAAVDLETDNLIQSTIRTQFE--DCTVLTIAHRLNTIMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 999 56666677777776543 46666433 3689999999999854
No 350
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.60 E-value=7.6e-16 Score=164.11 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=118.7
Q ss_pred CccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEeeecCC--CCCc
Q 007511 292 LKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHLTEAPV--PGTT 356 (601)
Q Consensus 292 ~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v~qs~~--pgtT 356 (601)
.+.+++++ +|.+.+|+. .+|||+|+|||||.++|.|..+|.+|.+ +...+.|||++|+-. +||.
T Consensus 348 ~~pil~~i-sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTI 426 (580)
T COG4618 348 KKPILKGI-SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTI 426 (580)
T ss_pred CCcceecc-eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcH
Confidence 45789999 999999975 5599999999999999999999999965 345678999999886 9988
Q ss_pred eeeeeeeccccchh------------hh-hccC-CCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccc
Q 007511 357 LGIVRVEGVLPAQA------------KL-FDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAG 412 (601)
Q Consensus 357 ~~~i~~~~~l~~~~------------~l-lDtp-GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~ 412 (601)
.+|+.-...-.+.. ++ +..| |... -..--..||||||||+++|||+ +|.+++| |..
T Consensus 427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~ 506 (580)
T COG4618 427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506 (580)
T ss_pred HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence 88875322111111 22 1222 1111 1112356999999999999999 9999999 444
Q ss_pred hHHHHHHHHHHHHHhcCceEEE------EEEeecCEEEeecceecc---hHHHHHH
Q 007511 413 HSIHIAGLMRMDVEESSVESIY------VTVWASPYLPLHMGKTEN---ACTMVEK 459 (601)
Q Consensus 413 ~~~~l~~lir~~~~~~g~tii~------~~~~ad~vl~l~~Gki~~---a~e~~~~ 459 (601)
....+...+.....+ |.+++. +..-+|++++|++|++.. -++++.+
T Consensus 507 GE~AL~~Ai~~~k~r-G~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 507 GEAALAAAILAAKAR-GGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 455666666666666 445543 334789999999999843 3455554
No 351
>PTZ00243 ABC transporter; Provisional
Probab=99.59 E-value=2.5e-15 Score=186.20 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=127.1
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.|.+.++..+|.. ..+|+++ ++.+.+|+ |++||++|||||||+++|+|++.|.+|.+ ...++.+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~v-sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGV-SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 5778888888854 4589999 99998885 67799999999999999999999999954 3567889
Q ss_pred eEeeecCC--CCCceeeeeeeccccc--hhhhhccCCCcC--------cC----CccCCCCHHHHHHhcccccc--C-CC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA--QAKLFDTPGLLH--------PN----QITTRLTREEQKLVNINKEL--K-PR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~--~~~llDtpGL~~--------~~----~~~~~LSgGe~qrv~iaraL--~-P~ 405 (601)
++++|++. .||-++|+........ ..+.++..|+.+ .+ ..-..||||||||++||||| + |+
T Consensus 1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 99999998 7766888865211111 134455555532 12 22357999999999999999 4 79
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
+++| |......+...++.... +.|++.++ ..||++++|++|++.+
T Consensus 1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE 1524 (1560)
T PTZ00243 1467 FILMDEATANIDPALDRQIQATVMSAFS--AYTVITIAHRLHTVAQYDKIIVMDHGAVAE 1524 (1560)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHCC--CCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9999 55555677777776433 46666333 4689999999999854
No 352
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.59 E-value=1.7e-15 Score=186.41 Aligned_cols=169 Identities=12% Similarity=0.197 Sum_probs=126.5
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc-------------cccc
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EEKN 342 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~~~ 342 (601)
.+.+.++...|+. ..+++++ ++.+.+|+++ +||+||||||||+++|+|++.|++|.+. ..++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~i-sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~ 460 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDL-NFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRS 460 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccc-eEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHH
Confidence 5788889999974 2589999 9999999754 5999999999999999999999999541 2356
Q ss_pred ceeEeeecCC--CCCceeeeeeeccc------------------------------------------------------
Q 007511 343 IVSHLTEAPV--PGTTLGIVRVEGVL------------------------------------------------------ 366 (601)
Q Consensus 343 ~i~~v~qs~~--pgtT~~~i~~~~~l------------------------------------------------------ 366 (601)
.+++++|.+. ++|..+++.+....
T Consensus 461 ~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 461 KIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred hccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 7999999986 55447777653100
Q ss_pred ----c--chhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHH
Q 007511 367 ----P--AQAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAG 419 (601)
Q Consensus 367 ----~--~~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~ 419 (601)
. ...++++..|+.. .+.....|||||+||++||||| +|++++| |+.....+..
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 0 0012222333321 2345678999999999999999 9999999 7888888888
Q ss_pred HHHHHHHhcCceEEEEE------EeecCEEEeecce
Q 007511 420 LMRMDVEESSVESIYVT------VWASPYLPLHMGK 449 (601)
Q Consensus 420 lir~~~~~~g~tii~~~------~~ad~vl~l~~Gk 449 (601)
.++....+.+.|++.++ ..||++++|++|+
T Consensus 621 ~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 621 TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCc
Confidence 88877653366666333 4799999999985
No 353
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.59 E-value=1.8e-15 Score=173.73 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=119.5
Q ss_pred eEEEEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-cccceeEeeecCC--CC
Q 007511 280 KLHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-EKNIVSHLTEAPV--PG 354 (601)
Q Consensus 280 ~V~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-~~~~i~~v~qs~~--pg 354 (601)
.+.+.++...|. .+.+++++ ++.+.+|++++ +|+||||||||+++|+|+.++..|.+.. .++.+++++|.+. ++
T Consensus 451 ~i~~~nv~~~~~~~~~il~~i-sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~ 529 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESL-SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLG 529 (659)
T ss_pred eEEEEeeEEECCCCCeeeecc-eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCc
Confidence 466778887773 45799999 99999997655 9999999999999999999999887632 2567999999986 55
Q ss_pred Cceeeeeeecc--------cc--chhhhhccCCCcC-cCC---------ccCCCCHHHHHHhcccccc--CCCEEEe---
Q 007511 355 TTLGIVRVEGV--------LP--AQAKLFDTPGLLH-PNQ---------ITTRLTREEQKLVNINKEL--KPRTYRI--- 409 (601)
Q Consensus 355 tT~~~i~~~~~--------l~--~~~~llDtpGL~~-~~~---------~~~~LSgGe~qrv~iaraL--~P~lllL--- 409 (601)
+..+++.+... .. ...++++..|+.. .++ ....|||||+||+++||++ +|++++|
T Consensus 530 tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEp 609 (659)
T TIGR00954 530 TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDEC 609 (659)
T ss_pred CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44787765321 01 1135566677654 222 2368999999999999999 9999999
Q ss_pred ----ccchHHHHHHHHHHHHHhcCceEEEE------EEeecCEEEee
Q 007511 410 ----KAGHSIHIAGLMRMDVEESSVESIYV------TVWASPYLPLH 446 (601)
Q Consensus 410 ----D~~~~~~l~~lir~~~~~~g~tii~~------~~~ad~vl~l~ 446 (601)
|+.....+..+++. .+.|++.+ ..+||++++++
T Consensus 610 ts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 610 TSAVSVDVEGYMYRLCRE----FGITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred ccCCCHHHHHHHHHHHHH----cCCEEEEEeCchHHHHhCCEEEEEe
Confidence 67777777766654 25666633 25788888875
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.59 E-value=5.4e-15 Score=142.26 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=99.6
Q ss_pred ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhh
Q 007511 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAK 371 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~ 371 (601)
..+++++ ++.+.+|++++ +|+||||||||||++++ +.|.+... +. .+......+.+. ...+
T Consensus 8 ~~~l~~i-sl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~----~~-----~~~~~~~~~~~~----~q~~ 69 (176)
T cd03238 8 VHNLQNL-DVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLI----SF-----LPKFSRNKLIFI----DQLQ 69 (176)
T ss_pred eeeecce-EEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEEC----Cc-----ccccccccEEEE----hHHH
Confidence 4578888 89999997655 99999999999999974 35643210 00 000001111111 1156
Q ss_pred hhccCCCcC--cCCccCCCCHHHHHHhcccccc--C--CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE--
Q 007511 372 LFDTPGLLH--PNQITTRLTREEQKLVNINKEL--K--PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-- 436 (601)
Q Consensus 372 llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~--P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-- 436 (601)
+++.+|+.. .++.+..||+||+||+++|+++ + |++++| |+.....+..+++..... +.+++.++
T Consensus 70 ~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvIivSH~ 148 (176)
T cd03238 70 FLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEHN 148 (176)
T ss_pred HHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC
Confidence 788889864 6778999999999999999999 8 999998 788888999998877654 67776433
Q ss_pred ----EeecCEEEeeccee
Q 007511 437 ----VWASPYLPLHMGKT 450 (601)
Q Consensus 437 ----~~ad~vl~l~~Gki 450 (601)
.+||+++.|.+|+.
T Consensus 149 ~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 149 LDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHhCCEEEEECCCCC
Confidence 36888888877654
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.59 E-value=1e-14 Score=139.66 Aligned_cols=151 Identities=28% Similarity=0.385 Sum_probs=104.2
Q ss_pred HHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHH
Q 007511 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (601)
Q Consensus 186 ~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w 265 (601)
..+++...+..+|+|++|+|+.++..+.+..+.+.+. + .++++|+||+||+++ ..+..|
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~----------------~-k~~ilVlNK~Dl~~~----~~~~~~ 67 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILG----------------N-KPRIIVLNKADLADP----KKTKKW 67 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhc----------------C-CCEEEEEehhhcCCh----HHHHHH
Confidence 3456777788899999999999887765555444321 1 278999999999753 234556
Q ss_pred HHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcc-----------cCC-cEEEECCCCCchhHHHHHHhccccCC
Q 007511 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG-----------KRG-NVWAIGAQNAGKSTLLNAIAKSVDAG 333 (601)
Q Consensus 266 ~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~-----------~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~ 333 (601)
++.+ +..+ ..++.+|+..+.|.+.+.+.+..... ..+ .++++|.+|+|||||+|.|.+..
T Consensus 68 ~~~~-~~~~----~~vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~--- 139 (171)
T cd01856 68 LKYF-ESKG----EKVLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKK--- 139 (171)
T ss_pred HHHH-HhcC----CeEEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCC---
Confidence 5432 2222 46889999999999888877754310 111 57779999999999999999643
Q ss_pred CCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCc
Q 007511 334 RGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLL 379 (601)
Q Consensus 334 ~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~ 379 (601)
....+..|++|.....+.. .....++||||+.
T Consensus 140 ------------~~~~~~~~~~T~~~~~~~~--~~~~~~iDtpG~~ 171 (171)
T cd01856 140 ------------VAKVGNKPGVTKGIQWIKI--SPGIYLLDTPGIL 171 (171)
T ss_pred ------------ceeecCCCCEEeeeEEEEe--cCCEEEEECCCCC
Confidence 1234555778865544432 2346799999983
No 356
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.58 E-value=1.8e-15 Score=173.46 Aligned_cols=169 Identities=18% Similarity=0.207 Sum_probs=131.2
Q ss_pred EEEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------c-----c----
Q 007511 281 LHFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-------G-----E---- 339 (601)
Q Consensus 281 V~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-------~-----~---- 339 (601)
+.+.++.+.|+. ..+++++ ++.+.+|+++. +|+||+|||||+++|+|+.+|++|.+ . .
T Consensus 5 l~~~nl~~~y~~~~~~~~il~~v-s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 5 LELKDIRRSYPSGEEQVEVLKGI-SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEeeEEEEeCCCCCCeeeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 456677777742 4689999 99999997655 99999999999999999999999943 1 1
Q ss_pred cccceeEeeecCC--CCCc-eeeeeeeccc---c------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 340 EKNIVSHLTEAPV--PGTT-LGIVRVEGVL---P------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgtT-~~~i~~~~~l---~------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
.++.+++++|.+. ++.| .+++.+.... . ...++++.+|+.. .++.+..||+||+||+++|++| +|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P 163 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 1357899999876 6666 6665432111 1 1146788889876 6788999999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++++| |+..+..+..+++....+ +.+++.++ ..||+++.+++|++.
T Consensus 164 ~lLllDEP~~gLD~~s~~~l~~ll~~l~~~-g~tilivsH~~~~~~~~d~i~~l~~G~i~ 222 (648)
T PRK10535 164 QVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQVAAQAERVIEIRDGEIV 222 (648)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHhCCEEEEEECCEEE
Confidence 99999 889999999999887654 66666222 368999999999873
No 357
>PLN03130 ABC transporter C family member; Provisional
Probab=99.58 E-value=4.2e-15 Score=184.53 Aligned_cols=168 Identities=12% Similarity=0.228 Sum_probs=124.5
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCC-CCccccccceeEeeecCC--
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGR-GGDGEEKNIVSHLTEAPV-- 352 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~-G~i~~~~~~i~~v~qs~~-- 352 (601)
.|.+.++...|+. ..+++++ ++.+++|+. +++|++|||||||+++|+|.+++.+ |.+. .+..++|++|.++
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~i-nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~-l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNI-NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV-IRGTVAYVPQVSWIF 691 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeece-eEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE-EcCeEEEEcCccccC
Confidence 4778888888864 4589999 899999975 5599999999999999999999999 7654 5678999999998
Q ss_pred CCCceeeeeeeccccch--hhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 353 PGTTLGIVRVEGVLPAQ--AKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 353 pgtT~~~i~~~~~l~~~--~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
.+|-++|+.+....... .++++..++.. -......||||||||++||||+ +|++|+|
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSAL 771 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSAL 771 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 55559999875433221 33444444421 1223456999999999999999 9999999
Q ss_pred ccchHHHHH-HHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 410 KAGHSIHIA-GLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 D~~~~~~l~-~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
|+....++. .+++... + +.|++.++ ..||++++|++|++.
T Consensus 772 D~~~~~~I~~~~l~~~l-~-~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~ 818 (1622)
T PLN03130 772 DAHVGRQVFDKCIKDEL-R-GKTRVLVTNQLHFLSQVDRIILVHEGMIK 818 (1622)
T ss_pred CHHHHHHHHHHHhhHHh-c-CCEEEEEECCHhHHHhCCEEEEEeCCEEE
Confidence 554444443 3444332 2 56766443 468999999999984
No 358
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.57 E-value=5.7e-15 Score=182.73 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=127.9
Q ss_pred eEEEEEeEeecC--CccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G--~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.|.+.++...|. ...+|+++ ++.+++|+ +++||+||||||||+++|+|++. .+|.+ ...++.+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~i-s~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDL-SFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 577888888885 36799999 99999885 67799999999999999999986 67854 3467889
Q ss_pred eEeeecCC--CCCceeeeeeeccccc--hhhhhccCCCcC--------cCC----ccCCCCHHHHHHhcccccc--CCCE
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPA--QAKLFDTPGLLH--------PNQ----ITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~--~~~llDtpGL~~--------~~~----~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
++++|++. +||-++|+........ ....++..|+.. .+. .-..||+||+||++||||| +|++
T Consensus 1295 s~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I 1374 (1490)
T TIGR01271 1295 GVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374 (1490)
T ss_pred EEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE
Confidence 99999998 7776888864321111 134455555532 111 2346999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecch
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTENA 453 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~a 453 (601)
++| |......+...++.... +.|++.++ ..+|++++|++|++.+.
T Consensus 1375 LlLDEaTS~lD~~Te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~ 1432 (1490)
T TIGR01271 1375 LLLDEPSAHLDPVTLQIIRKTLKQSFS--NCTVILSEHRVEALLECQQFLVIEGSSVKQY 1432 (1490)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHhCCEEEEEECCEEEEe
Confidence 999 67677788888876543 46776443 36899999999998543
No 359
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.56 E-value=1.1e-15 Score=151.85 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=110.5
Q ss_pred ccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-----------cccceeEeeecC----CCCCcee
Q 007511 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-----------EKNIVSHLTEAP----VPGTTLG 358 (601)
Q Consensus 295 LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-----------~~~~i~~v~qs~----~pgtT~~ 358 (601)
...+| ++.+++|.+.. +|+|||||||+|++|+|++.|++|.+.. .-+.+++++-.. |.....+
T Consensus 39 AVqdi-sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 39 AVQDI-SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhee-eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 56677 88889997655 9999999999999999999999995521 112233322111 1000000
Q ss_pred ee---eeeccccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHH
Q 007511 359 IV---RVEGVLPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAG 419 (601)
Q Consensus 359 ~i---~~~~~l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~ 419 (601)
.+ ...+..+. ...+.+.+++.. .+.+++.||-|||.|+.+|.+| +|++++| |...+..+..
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~ 197 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence 00 00001111 134555666665 6678899999999999999998 8999998 7888999999
Q ss_pred HHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 420 LMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 420 lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+++....+.+.|+++ ++.+|+|++.|+.|++.
T Consensus 198 Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv 236 (325)
T COG4586 198 FLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV 236 (325)
T ss_pred HHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEe
Confidence 999998887888874 44688999999999984
No 360
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.56 E-value=5.1e-15 Score=172.76 Aligned_cols=172 Identities=14% Similarity=0.216 Sum_probs=125.1
Q ss_pred ceEEEEEeEeecCCc---cccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------ccccc
Q 007511 279 TKLHFVSAVKNWGLK---SLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKN 342 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~---~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~ 342 (601)
.+|.+.++...|-.+ .+++++ ++.+..|+ +++||++||||||.+-.|-.++.|+.|.+ ...|+
T Consensus 986 G~I~~~~V~F~YPsRP~~~Il~~l-~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~ 1064 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTRPDVPVLNNL-SLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRK 1064 (1228)
T ss_pred eEEEEeeeEeeCCCCCCchhhcCC-cEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHH
Confidence 468888999998654 589999 88999886 56699999999999999999999999954 46788
Q ss_pred ceeEeeecCC-CCCc-eeeeeeeccccchhhhhccC--------------CCcC-cCCccCCCCHHHHHHhcccccc--C
Q 007511 343 IVSHLTEAPV-PGTT-LGIVRVEGVLPAQAKLFDTP--------------GLLH-PNQITTRLTREEQKLVNINKEL--K 403 (601)
Q Consensus 343 ~i~~v~qs~~-pgtT-~~~i~~~~~l~~~~~llDtp--------------GL~~-~~~~~~~LSgGe~qrv~iaraL--~ 403 (601)
+++.|.|.|. -..| ++|+.+...--...++++.. |... -...-.+|||||+||++||||| +
T Consensus 1065 ~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRn 1144 (1228)
T KOG0055|consen 1065 QIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRN 1144 (1228)
T ss_pred hcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcC
Confidence 9999999998 5555 99998862111222332222 2211 2334578999999999999999 9
Q ss_pred CCEEEeccc-------hHHHHHHHHHHHHHhcCceEE------EEEEeecCEEEeecceecch
Q 007511 404 PRTYRIKAG-------HSIHIAGLMRMDVEESSVESI------YVTVWASPYLPLHMGKTENA 453 (601)
Q Consensus 404 P~lllLD~~-------~~~~l~~lir~~~~~~g~tii------~~~~~ad~vl~l~~Gki~~a 453 (601)
|++|+||+. ....+.+.+... .+ |.|.+ .....||.++++++|++.+.
T Consensus 1145 PkILLLDEATSALDseSErvVQeALd~a-~~-gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1145 PKILLLDEATSALDSESERVVQEALDRA-ME-GRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred CCeeeeeccchhhhhhhHHHHHHHHHHh-hc-CCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 999999543 333344444333 23 44544 23357899999999998543
No 361
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.56 E-value=3.1e-14 Score=144.33 Aligned_cols=152 Identities=22% Similarity=0.212 Sum_probs=103.4
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+|.+++|+|+.++..++. .+.+++.... .. + .++++|+||+||.+.. ....+|...+ +..
T Consensus 34 ~~n~D~viiV~d~~~p~~s~~-~l~r~l~~~~-------~~----~-i~~vIV~NK~DL~~~~---~~~~~~~~~~-~~~ 96 (245)
T TIGR00157 34 VANIDQIVIVSSAVLPELSLN-QLDRFLVVAE-------AQ----N-IEPIIVLNKIDLLDDE---DMEKEQLDIY-RNI 96 (245)
T ss_pred cccCCEEEEEEECCCCCCCHH-HHHHHHHHHH-------HC----C-CCEEEEEECcccCCCH---HHHHHHHHHH-HHC
Confidence 446899999999999887754 4667665321 11 2 3799999999997542 2223555443 334
Q ss_pred CCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCC
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVP 353 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~p 353 (601)
| ..++.+|++.+.|.+++++.+ .+..++++|++|||||||||.|++......|.+.... ..-.
T Consensus 97 g----~~v~~~SAktg~gi~eLf~~l-----~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~--------~~G~ 159 (245)
T TIGR00157 97 G----YQVLMTSSKNQDGLKELIEAL-----QNRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKL--------GLGK 159 (245)
T ss_pred C----CeEEEEecCCchhHHHHHhhh-----cCCEEEEECCCCCCHHHHHHHHhhhhhccccceeccC--------CCCC
Confidence 4 368899999999988888776 2235677999999999999999988766666432110 1115
Q ss_pred CCceeeeeeeccccchhhhhccCCCcCcC
Q 007511 354 GTTLGIVRVEGVLPAQAKLFDTPGLLHPN 382 (601)
Q Consensus 354 gtT~~~i~~~~~l~~~~~llDtpGL~~~~ 382 (601)
+||.....+.. ....++||||+....
T Consensus 160 hTT~~~~l~~l---~~~~liDtPG~~~~~ 185 (245)
T TIGR00157 160 HTTTHVELFHF---HGGLIADTPGFNEFG 185 (245)
T ss_pred CcCCceEEEEc---CCcEEEeCCCccccC
Confidence 57755554542 235899999998643
No 362
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.9e-14 Score=134.29 Aligned_cols=169 Identities=18% Similarity=0.241 Sum_probs=127.1
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------c------c
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------E------E 340 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~------~ 340 (601)
+...++.||...-.+++ +|...+|+|.. ||.+|+|||||+++|.+.+.|+.|.+. + .
T Consensus 9 V~~lsk~Yg~~~gc~~v-sF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~ 87 (258)
T COG4107 9 VSGLSKLYGPGKGCRDV-SFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLL 87 (258)
T ss_pred ehhhhhhhCCCcCcccc-ceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHh
Confidence 34556778888888888 89999998766 999999999999999999999999541 1 1
Q ss_pred ccceeEeeecCCCCCcee-----eeeee-----ccccc-----hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPVPGTTLG-----IVRVE-----GVLPA-----QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~pgtT~~-----~i~~~-----~~l~~-----~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL- 402 (601)
+..-|++.|+|..|.... |+-.. ....+ ...+++...|.. .+..+..+|||||||+.|||.|
T Consensus 88 RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLV 167 (258)
T COG4107 88 RTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLV 167 (258)
T ss_pred hhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhc
Confidence 223578888887664322 22110 00011 145677777764 5677899999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
.|+++++ |..-+..+.+++|-+..+.+.+++.++ ..++|.++|..|++.+
T Consensus 168 t~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 168 TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred cCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 9999998 677788999999999888777766443 3689999999998744
No 363
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.55 E-value=9.9e-15 Score=179.33 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=127.5
Q ss_pred EEEEeEeecC----CccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhcccc---CCCCCc--------ccccccee
Q 007511 282 HFVSAVKNWG----LKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVD---AGRGGD--------GEEKNIVS 345 (601)
Q Consensus 282 ~lvSa~kg~G----~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~---~~~G~i--------~~~~~~i~ 345 (601)
...++...++ .+.+++++ ++.+.+|++ +++|+||||||||+|+|+|..+ +.+|++ ...++.++
T Consensus 761 ~~~nl~~~~~~~~~~~~iL~~v-s~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~ 839 (1394)
T TIGR00956 761 HWRNLTYEVKIKKEKRVILNNV-DGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG 839 (1394)
T ss_pred EEEeeEEEecCCCCCcEeeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhccee
Confidence 4445555553 45799999 999999975 5599999999999999999987 566754 12456789
Q ss_pred EeeecCC--CCCc-eeeeeeecccc------c------hhhhhccCCCcC-cCCccC----CCCHHHHHHhcccccc--C
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVLP------A------QAKLFDTPGLLH-PNQITT----RLTREEQKLVNINKEL--K 403 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l~------~------~~~llDtpGL~~-~~~~~~----~LSgGe~qrv~iaraL--~ 403 (601)
|++|.+. +..| ++++.+...+. . ..++++.+|+.+ .++.++ .||||||||++||++| +
T Consensus 840 yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~ 919 (1394)
T TIGR00956 840 YVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAK 919 (1394)
T ss_pred eecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcC
Confidence 9999864 6666 77776532111 1 146889999976 666666 7999999999999999 9
Q ss_pred CC-EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE--------EeecCEEEeecc-ee
Q 007511 404 PR-TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT--------VWASPYLPLHMG-KT 450 (601)
Q Consensus 404 P~-lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~--------~~ad~vl~l~~G-ki 450 (601)
|+ +++| |......+..+++....+ |.+++... ..+|+++.|++| ++
T Consensus 920 P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~i 982 (1394)
T TIGR00956 920 PKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQT 982 (1394)
T ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCCEE
Confidence 97 8888 788899999999998765 67776322 357999999987 76
No 364
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.55 E-value=2.2e-14 Score=151.64 Aligned_cols=182 Identities=16% Similarity=0.237 Sum_probs=125.8
Q ss_pred ceEEEEEeEeecCC-ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 279 TKLHFVSAVKNWGL-KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 279 ~~V~lvSa~kg~G~-~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
..|.+.+++.+|.. +.++++| ++.+.+|++ ++||++|+||||+++.|..+....+|.+ ...|..|
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~di-sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDI-SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred CeEEEEEeEEecCCCCceeecc-eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 46888899999964 6799999 999988865 5599999999999999999999999965 2356778
Q ss_pred eEeeecCC--CCCceeeeeeeccccchh-------------hhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPAQA-------------KLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~~~-------------~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
|.|||+.. ..|-..|+++.-.-.... .++..|.=-. -...--.|||||+|||++||++ .|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 99999876 444477777643222222 2222221111 1223456999999999999999 888
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEE-----EEEEeecCEEEeecceec---chHHHHHHHcC
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESI-----YVTVWASPYLPLHMGKTE---NACTMVEKHFG 462 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii-----~~~~~ad~vl~l~~Gki~---~a~e~~~~~~g 462 (601)
+++| |......+...+...... ..+++ .....||.++++.+|++. +-+|++.+.-|
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca~-RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG 765 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCAN-RTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGG 765 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhcC-CceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCC
Confidence 8888 444445566555555543 23344 223468999999999983 34455554333
No 365
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.55 E-value=4.6e-14 Score=132.81 Aligned_cols=146 Identities=32% Similarity=0.493 Sum_probs=97.7
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
....++|+|++|+|+.+++.+.+..+.+++... + .|+++|+||+|+++. .....|. .+..
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~--------------~-~p~iiv~NK~Dl~~~----~~~~~~~-~~~~ 67 (156)
T cd01859 8 RIIKESDVVLEVLDARDPELTRSRKLERYVLEL--------------G-KKLLIVLNKADLVPK----EVLEKWK-SIKE 67 (156)
T ss_pred HHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhC--------------C-CcEEEEEEhHHhCCH----HHHHHHH-HHHH
Confidence 344568999999999998877766665554321 1 379999999999753 2334454 2222
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhhhccc---CCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEee
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK---RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLT 348 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~---~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~ 348 (601)
..+ ..++.+|+..+.|.+.+++.+..+... ...++++|.+|+|||||+|.+.+... ..
T Consensus 68 ~~~----~~~~~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~~---------------~~ 128 (156)
T cd01859 68 SEG----IPVVYVSAKERLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRHS---------------AS 128 (156)
T ss_pred hCC----CcEEEEEccccccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCCc---------------cc
Confidence 222 358899999999999888888554322 23677799999999999999985321 12
Q ss_pred ecCCCCCceeeeeeeccccchhhhhccCCC
Q 007511 349 EAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (601)
Q Consensus 349 qs~~pgtT~~~i~~~~~l~~~~~llDtpGL 378 (601)
.++.+|+|.....+. ......++||||+
T Consensus 129 ~~~~~~~t~~~~~~~--~~~~~~~~DtpGi 156 (156)
T cd01859 129 TSPSPGYTKGEQLVK--ITSKIYLLDTPGV 156 (156)
T ss_pred cCCCCCeeeeeEEEE--cCCCEEEEECcCC
Confidence 234466664433221 2334678999996
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.53 E-value=2.6e-14 Score=170.32 Aligned_cols=170 Identities=18% Similarity=0.242 Sum_probs=125.5
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--C
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--P 353 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--p 353 (601)
.+.+.++...|+. ...+++| ++.+++|+ +++||+.||||||||.+|+|.++..+|.+.. ...++|++|.++ .
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dI-n~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v-~gsiaYv~Q~pWI~n 595 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDI-NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAV-NGSVAYVPQQPWIQN 595 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccce-eEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEE-cCeEEEeccccHhhC
Confidence 4667788888865 3378999 89999996 5669999999999999999999999996543 345899999999 7
Q ss_pred CCceeeeeeeccccch--hhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEEEe-------c
Q 007511 354 GTTLGIVRVEGVLPAQ--AKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTYRI-------K 410 (601)
Q Consensus 354 gtT~~~i~~~~~l~~~--~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D 410 (601)
||-++||.+...++.. .++++..+|.. -...--.||||||||+++|||+ +.++|+| |
T Consensus 596 gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVD 675 (1381)
T KOG0054|consen 596 GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVD 675 (1381)
T ss_pred CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhh
Confidence 7779999887655442 34454444432 2334567999999999999999 9999999 3
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEE------EEeecCEEEeecceecc
Q 007511 411 AGHSIHIAGLMRMDVEESSVESIYV------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~~g~tii~~------~~~ad~vl~l~~Gki~~ 452 (601)
.....++.+-+-....+ +.|++.+ ...||.+++|++|++..
T Consensus 676 ahvg~~if~~ci~~~L~-~KT~ILVTHql~~L~~ad~Iivl~~G~I~~ 722 (1381)
T KOG0054|consen 676 AHVGKHIFEECIRGLLR-GKTVILVTHQLQFLPHADQIIVLKDGKIVE 722 (1381)
T ss_pred HhhhHHHHHHHHHhhhc-CCEEEEEeCchhhhhhCCEEEEecCCeEec
Confidence 33334443322222333 4667643 45799999999999843
No 367
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=2e-14 Score=135.59 Aligned_cols=137 Identities=26% Similarity=0.319 Sum_probs=92.5
Q ss_pred EeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeee
Q 007511 285 SAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVE 363 (601)
Q Consensus 285 Sa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~ 363 (601)
+..+.|....+++++ ++.+.+|++++ +|+||+|||||+++|+|.+.+..|.+......+ ...
T Consensus 4 ~~~~~~~~~~~l~~~-~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~--------~~~-------- 66 (157)
T cd00267 4 NLSFRYGGRTALDNV-SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDI--------AKL-------- 66 (157)
T ss_pred EEEEEeCCeeeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEc--------ccC--------
Confidence 344455555788888 89999987665 999999999999999999988887431100000 000
Q ss_pred ccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE
Q 007511 364 GVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY 434 (601)
Q Consensus 364 ~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~ 434 (601)
....+....++ ..+||+||+||+++++++ +|++++| |......+..+++..... +.+++.
T Consensus 67 ----~~~~~~~~i~~------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~ 135 (157)
T cd00267 67 ----PLEELRRRIGY------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVII 135 (157)
T ss_pred ----CHHHHHhceEE------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 00000000111 111999999999999999 9999999 777788888888877654 556653
Q ss_pred EE-------EeecCEEEeecce
Q 007511 435 VT-------VWASPYLPLHMGK 449 (601)
Q Consensus 435 ~~-------~~ad~vl~l~~Gk 449 (601)
++ .+||+++.+.+|+
T Consensus 136 ~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 136 VTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCHHHHHHhCCEEEEEeCcC
Confidence 33 3567777777653
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.52 E-value=2.1e-15 Score=138.44 Aligned_cols=111 Identities=24% Similarity=0.351 Sum_probs=83.5
Q ss_pred chhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEeeecCC--CCCc-eeee
Q 007511 297 DDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHLTEAPV--PGTT-LGIV 360 (601)
Q Consensus 297 ~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v~qs~~--pgtT-~~~i 360 (601)
+++ ++.+.+|++++ +|+||+|||||+++|+|..++..|.+ ...++.++++++... +++| .++
T Consensus 2 ~~v-~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 2 KNV-SLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEE-EEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred Cce-EEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 455 67778887655 99999999999999999999988854 234567899998855 6676 443
Q ss_pred eeeccccchhhhhccCCCcC-c----CCccCCCCHHHHHHhcccccc--CCCEEEeccc
Q 007511 361 RVEGVLPAQAKLFDTPGLLH-P----NQITTRLTREEQKLVNINKEL--KPRTYRIKAG 412 (601)
Q Consensus 361 ~~~~~l~~~~~llDtpGL~~-~----~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~ 412 (601)
. .-....++++.+++.. . ++....||+||+||+++|+++ +|++++||.-
T Consensus 80 ~---~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEP 135 (137)
T PF00005_consen 80 E---SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEP 135 (137)
T ss_dssp H---HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEEST
T ss_pred c---ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1 1112355667777654 3 334499999999999999999 9999999753
No 369
>PLN03140 ABC transporter G family member; Provisional
Probab=99.52 E-value=8.7e-15 Score=179.56 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=123.2
Q ss_pred CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC---CCCcc---------ccccceeEeeecCC--CCCc
Q 007511 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---RGGDG---------EEKNIVSHLTEAPV--PGTT 356 (601)
Q Consensus 292 ~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~---~G~i~---------~~~~~i~~v~qs~~--pgtT 356 (601)
...+|+++ ++.+.+|++++ +|+|||||||||++|+|...++ +|.+. ..++.++|++|... |.+|
T Consensus 177 ~~~IL~~v-s~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 177 KLTILKDA-SGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred cceeccCC-eEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 36789999 89999997655 9999999999999999999887 67541 12456899999865 6666
Q ss_pred -eeeeeeeccccc-------------------------------------------hhhhhccCCCcC------cCCccC
Q 007511 357 -LGIVRVEGVLPA-------------------------------------------QAKLFDTPGLLH------PNQITT 386 (601)
Q Consensus 357 -~~~i~~~~~l~~-------------------------------------------~~~llDtpGL~~------~~~~~~ 386 (601)
.+++.+.....+ ...+++.+||.+ .+..+.
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 676654321100 024677889975 255678
Q ss_pred CCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE--------EeecCEEEeecce
Q 007511 387 RLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT--------VWASPYLPLHMGK 449 (601)
Q Consensus 387 ~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~--------~~ad~vl~l~~Gk 449 (601)
.|||||||||.+|++| +|++++| |...+..+..+++......|.|++... .++|++++|.+|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999 9999998 889999999999998765566766332 4689999999998
Q ss_pred e
Q 007511 450 T 450 (601)
Q Consensus 450 i 450 (601)
+
T Consensus 416 i 416 (1470)
T PLN03140 416 I 416 (1470)
T ss_pred E
Confidence 7
No 370
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=8.8e-15 Score=138.51 Aligned_cols=140 Identities=16% Similarity=0.201 Sum_probs=106.5
Q ss_pred ecCCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCccccccceeEeee------------cCC-CC
Q 007511 289 NWGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTE------------APV-PG 354 (601)
Q Consensus 289 g~G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~q------------s~~-pg 354 (601)
..|.+.++.++ ++.+..|++ ++.|+||+||||||++|+|+.+|+.|.+......+..... ... +.
T Consensus 11 ~R~e~~lf~~L-~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~e 89 (209)
T COG4133 11 ERGERTLFSDL-SFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTE 89 (209)
T ss_pred ccCcceeecce-eEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccch
Confidence 34556788888 888888875 5599999999999999999999999977444333332221 112 44
Q ss_pred Cc-eeeeeeeccccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHH
Q 007511 355 TT-LGIVRVEGVLPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHI 417 (601)
Q Consensus 355 tT-~~~i~~~~~l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l 417 (601)
+| .+|+.|...+.+ ..+.++.+|+.. .+-++.+||-|||+||+|||-+ .+++.+| |......+
T Consensus 90 LTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l 169 (209)
T COG4133 90 LTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169 (209)
T ss_pred hhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHH
Confidence 56 778776433322 257788999987 7888999999999999999998 6677787 77788888
Q ss_pred HHHHHHHHHhcC
Q 007511 418 AGLMRMDVEESS 429 (601)
Q Consensus 418 ~~lir~~~~~~g 429 (601)
..++..-..++|
T Consensus 170 ~~l~~~H~~~GG 181 (209)
T COG4133 170 TALMAAHAAQGG 181 (209)
T ss_pred HHHHHHHhcCCC
Confidence 888888777766
No 371
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.52 E-value=5.6e-15 Score=181.49 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=121.7
Q ss_pred CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccc----cCCCCCcc-----------ccccceeEeeecCC--C
Q 007511 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV----DAGRGGDG-----------EEKNIVSHLTEAPV--P 353 (601)
Q Consensus 292 ~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~----~~~~G~i~-----------~~~~~i~~v~qs~~--p 353 (601)
.+.+++++ ++.+.+|++++ +|+||||||||||+|+|.. .+.+|.+. ..++.+++++|... |
T Consensus 73 ~~~iL~~v-s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 73 TFDILKPM-DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred cceeeeCC-EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 45689999 88899997655 9999999999999999986 45677541 12445899999865 7
Q ss_pred CCc-eeeeeeeccc----------cc-------hhhhhccCCCcC-cCC-----ccCCCCHHHHHHhcccccc--CCCEE
Q 007511 354 GTT-LGIVRVEGVL----------PA-------QAKLFDTPGLLH-PNQ-----ITTRLTREEQKLVNINKEL--KPRTY 407 (601)
Q Consensus 354 gtT-~~~i~~~~~l----------~~-------~~~llDtpGL~~-~~~-----~~~~LSgGe~qrv~iaraL--~P~ll 407 (601)
.+| .+++.+...+ .. ...+++.+||.+ .++ .+..|||||||||+||++| +|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 777 7766553211 00 024688899976 333 4578999999999999999 99999
Q ss_pred Ee-------ccchHHHHHHHHHHHHHhcCceEEEE--------EEeecCEEEeeccee
Q 007511 408 RI-------KAGHSIHIAGLMRMDVEESSVESIYV--------TVWASPYLPLHMGKT 450 (601)
Q Consensus 408 lL-------D~~~~~~l~~lir~~~~~~g~tii~~--------~~~ad~vl~l~~Gki 450 (601)
+| |+..+..+..+++....+.|.+++.. ..++|++++|++|++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~i 289 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQ 289 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeE
Confidence 99 88999999999999887556666632 236899999999987
No 372
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.52 E-value=2.7e-14 Score=177.31 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=124.4
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CC
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PG 354 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pg 354 (601)
.+.+.++...|+. ..+++++ ++.+++|+. +++|+||||||||+++|+|++++..|.+.. ...++|++|.++ ++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~i-sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~-~g~i~yv~Q~~~l~~~ 713 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGI-TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHM-KGSVAYVPQQAWIQND 713 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEE-CCEEEEEcCCccccCC
Confidence 4777888888864 4689999 999999975 559999999999999999999999997642 346899999987 44
Q ss_pred Cceeeeeeeccccch--hhhhccCCCc-----------C-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------cc
Q 007511 355 TTLGIVRVEGVLPAQ--AKLFDTPGLL-----------H-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KA 411 (601)
Q Consensus 355 tT~~~i~~~~~l~~~--~~llDtpGL~-----------~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~ 411 (601)
|.++|+.+....... .++++..++. . .+.....|||||+||++||||+ +|++++| |+
T Consensus 714 Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~ 793 (1522)
T TIGR00957 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 (1522)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 448888764322211 2233322221 1 2345678999999999999999 9999999 67
Q ss_pred chHHHHHHHHHHH--HHhcCceEEEEE------EeecCEEEeecceec
Q 007511 412 GHSIHIAGLMRMD--VEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 412 ~~~~~l~~lir~~--~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
.....+...+... ..+ +.|++.++ ..||++++|++|++.
T Consensus 794 ~~~~~i~~~l~~~~~~~~-~~tvIlvTH~~~~l~~~D~ii~l~~G~i~ 840 (1522)
T TIGR00957 794 HVGKHIFEHVIGPEGVLK-NKTRILVTHGISYLPQVDVIIVMSGGKIS 840 (1522)
T ss_pred HHHHHHHHHHhhhhhhhc-CCEEEEEeCChhhhhhCCEEEEecCCeEE
Confidence 7777777666532 222 45666332 358999999999974
No 373
>PTZ00243 ABC transporter; Provisional
Probab=99.51 E-value=3.2e-14 Score=176.40 Aligned_cols=158 Identities=19% Similarity=0.207 Sum_probs=114.2
Q ss_pred CCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCceeeeeeecccc
Q 007511 291 GLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTTLGIVRVEGVLP 367 (601)
Q Consensus 291 G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT~~~i~~~~~l~ 367 (601)
+.+.+++++ ++.+.+|+++ ++|+|||||||||++|+|+.++..|.+. ..+.++|++|.++ ++|..+++.+.....
T Consensus 671 ~~~~iL~~i-sl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~-~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~ 748 (1560)
T PTZ00243 671 EPKVLLRDV-SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW-AERSIAYVPQQAWIMNATVRGNILFFDEED 748 (1560)
T ss_pred CCceeEeee-EEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE-ECCeEEEEeCCCccCCCcHHHHHHcCChhh
Confidence 445689999 8999999755 4999999999999999999999999764 3467999999987 554488877632211
Q ss_pred c--hhh---------hhccC--CCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHH
Q 007511 368 A--QAK---------LFDTP--GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMD 424 (601)
Q Consensus 368 ~--~~~---------llDtp--GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~ 424 (601)
. ..+ .++.+ |+.. .+.....|||||+||++||||+ +|++++| |+.....+...+...
T Consensus 749 ~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~ 828 (1560)
T PTZ00243 749 AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG 828 (1560)
T ss_pred HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 1 111 22222 4433 4566889999999999999999 9999999 555555554422211
Q ss_pred HHhcCceEEEEE------EeecCEEEeecceec
Q 007511 425 VEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 425 ~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
..+ +.|++.++ .+||+++.|++|++.
T Consensus 829 ~~~-~~TvIlvTH~~~~~~~ad~ii~l~~G~i~ 860 (1560)
T PTZ00243 829 ALA-GKTRVLATHQVHVVPRADYVVALGDGRVE 860 (1560)
T ss_pred hhC-CCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 223 56766443 478999999999974
No 374
>PLN03140 ABC transporter G family member; Provisional
Probab=99.50 E-value=1.2e-14 Score=178.31 Aligned_cols=157 Identities=20% Similarity=0.216 Sum_probs=121.0
Q ss_pred CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC--CCCCcc---------ccccceeEeeecCC--CCCc-
Q 007511 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA--GRGGDG---------EEKNIVSHLTEAPV--PGTT- 356 (601)
Q Consensus 292 ~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~--~~G~i~---------~~~~~i~~v~qs~~--pgtT- 356 (601)
...+++++ ++.+.+|++++ +|+||||||||||+|+|...+ .+|++. ..++.++|++|.+. |..|
T Consensus 892 ~~~iL~~v-s~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV 970 (1470)
T PLN03140 892 RLQLLREV-TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTV 970 (1470)
T ss_pred CceEeeCc-EEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcH
Confidence 34699999 89999997655 999999999999999998753 456431 12456899999865 7667
Q ss_pred eeeeeeecccc------c------hhhhhccCCCcC-cCCcc-----CCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 357 LGIVRVEGVLP------A------QAKLFDTPGLLH-PNQIT-----TRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 357 ~~~i~~~~~l~------~------~~~llDtpGL~~-~~~~~-----~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
.+++.+...+. . ..++++.+||.+ .++.+ ..|||||||||+||++| +|++++|
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 77766532111 1 146889999976 55554 58999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEE--------EEeecCEEEeec-cee
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYV--------TVWASPYLPLHM-GKT 450 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~--------~~~ad~vl~l~~-Gki 450 (601)
|...+..+..+++....+ |.+++.. ..++|+++.|++ |++
T Consensus 1051 D~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 788899999999998766 6677622 246899999986 776
No 375
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=1e-14 Score=165.48 Aligned_cols=158 Identities=23% Similarity=0.330 Sum_probs=126.5
Q ss_pred CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC---CCCCc---------cccccceeEeeecCC--CCC
Q 007511 291 GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA---GRGGD---------GEEKNIVSHLTEAPV--PGT 355 (601)
Q Consensus 291 G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~---~~G~i---------~~~~~~i~~v~qs~~--pgt 355 (601)
..+.++++| +...++|++.+ +|++|||||||||+|+|.... .+|.+ ...++..+|++|+.. |..
T Consensus 41 ~~k~iL~~v-sg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 41 KTKTILKGV-SGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred ccceeeeCc-EEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccc
Confidence 468899999 88888898766 999999999999999998864 23432 234567899999987 888
Q ss_pred c-eeeeeeeccc--cc----------hhhhhccCCCcC-cCCccC-----CCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 356 T-LGIVRVEGVL--PA----------QAKLFDTPGLLH-PNQITT-----RLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 356 T-~~~i~~~~~l--~~----------~~~llDtpGL~~-~~~~~~-----~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
| .+.+.+.+.+ +. ..++++.+|+.+ .+..++ .+|||||+||++|..| +|.+++|
T Consensus 120 TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTS 199 (613)
T KOG0061|consen 120 TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTS 199 (613)
T ss_pred cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCC
Confidence 8 6666654322 21 157899999987 666665 5999999999999998 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEE--------EEEeecCEEEeeccee
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIY--------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~--------~~~~ad~vl~l~~Gki 450 (601)
|...+..+..+++.++.+ |.+++. +..+.|+++.|..|++
T Consensus 200 GLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~ 249 (613)
T KOG0061|consen 200 GLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEV 249 (613)
T ss_pred CcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcE
Confidence 788899999999999998 888872 3346799999998876
No 376
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.50 E-value=2.3e-13 Score=141.11 Aligned_cols=151 Identities=26% Similarity=0.254 Sum_probs=101.2
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
+..+|++++|+|+.++..+ ...+.+++.... .. + .|+++|+||+||.+. .....|.... ...
T Consensus 76 ~anvD~vllV~d~~~p~~s-~~~ldr~L~~~~-------~~----~-ip~iIVlNK~DL~~~----~~~~~~~~~~-~~~ 137 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFN-PRLLDRYLVAAE-------AA----G-IEPVIVLTKADLLDD----EEEELELVEA-LAL 137 (287)
T ss_pred EEeCCEEEEEEEcCCCCCC-HHHHHHHHHHHH-------Hc----C-CCEEEEEEHHHCCCh----HHHHHHHHHH-HhC
Confidence 5679999999999887633 235666665321 11 2 379999999999864 1223343322 333
Q ss_pred CCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCC
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVP 353 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~p 353 (601)
| ..++.+|+.++.|.+.|...+ .+..++++|+||||||||+|+|+|...+..|.+.. ..+.-.
T Consensus 138 g----~~v~~vSA~~g~gi~~L~~~L-----~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~--------~~~~g~ 200 (287)
T cd01854 138 G----YPVLAVSAKTGEGLDELREYL-----KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISE--------KLGRGR 200 (287)
T ss_pred C----CeEEEEECCCCccHHHHHhhh-----ccceEEEECCCCCCHHHHHHHHhchhhccccceec--------cCCCCC
Confidence 4 368899999999988777766 23457779999999999999999998887774321 111224
Q ss_pred CCceeeeeeeccccchhhhhccCCCcCc
Q 007511 354 GTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (601)
Q Consensus 354 gtT~~~i~~~~~l~~~~~llDtpGL~~~ 381 (601)
+||.....+. +.....++|+||+...
T Consensus 201 ~tT~~~~~~~--~~~~~~liDtPG~~~~ 226 (287)
T cd01854 201 HTTTHRELFP--LPGGGLLIDTPGFREF 226 (287)
T ss_pred cccceEEEEE--cCCCCEEEECCCCCcc
Confidence 5665444442 3334579999999753
No 377
>PRK00098 GTPase RsgA; Reviewed
Probab=99.50 E-value=2.3e-13 Score=141.89 Aligned_cols=152 Identities=25% Similarity=0.249 Sum_probs=100.2
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
+..+|++++|+|+.++... ...+.+++.... .. + .|+++|+||+||.+. ......|... ++..
T Consensus 78 aaniD~vllV~d~~~p~~~-~~~idr~L~~~~-------~~----~-ip~iIVlNK~DL~~~---~~~~~~~~~~-~~~~ 140 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS-TDLLDRFLVLAE-------AN----G-IKPIIVLNKIDLLDD---LEEARELLAL-YRAI 140 (298)
T ss_pred eecCCEEEEEEECCCCCCC-HHHHHHHHHHHH-------HC----C-CCEEEEEEhHHcCCC---HHHHHHHHHH-HHHC
Confidence 4679999999999876433 334566654321 11 2 379999999999742 2344555543 3344
Q ss_pred CCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCC
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVP 353 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~p 353 (601)
| ..++.+|+.++.|...+++.+ .+..++++|+||||||||+|+|+|...+..|.+.....+ --
T Consensus 141 g----~~v~~vSA~~g~gi~~L~~~l-----~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~--------G~ 203 (298)
T PRK00098 141 G----YDVLELSAKEGEGLDELKPLL-----AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGR--------GK 203 (298)
T ss_pred C----CeEEEEeCCCCccHHHHHhhc-----cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCC--------CC
Confidence 4 368899999999988887776 222456699999999999999999888777754321111 02
Q ss_pred CCceeeeeeeccccchhhhhccCCCcCc
Q 007511 354 GTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (601)
Q Consensus 354 gtT~~~i~~~~~l~~~~~llDtpGL~~~ 381 (601)
+||.....+. +.+...++||||+...
T Consensus 204 htT~~~~~~~--~~~~~~~~DtpG~~~~ 229 (298)
T PRK00098 204 HTTTHVELYD--LPGGGLLIDTPGFSSF 229 (298)
T ss_pred cccccEEEEE--cCCCcEEEECCCcCcc
Confidence 3553333322 2334589999999763
No 378
>PLN03073 ABC transporter F family; Provisional
Probab=99.49 E-value=4.5e-14 Score=162.89 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=113.9
Q ss_pred cceEEEEEeEeecCCccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccc---cCCCCCccccccceeEeeecCC-
Q 007511 278 ITKLHFVSAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSV---DAGRGGDGEEKNIVSHLTEAPV- 352 (601)
Q Consensus 278 ~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~---~~~~G~i~~~~~~i~~v~qs~~- 352 (601)
...|.+.++.+.|+...+++++ ++.+..|+ +++||+|||||||||++|+|.. .|..|. |.++.|...
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~i-sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~-------I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDA-SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQ-------ILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECC-EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCE-------EEEEeccCCC
Confidence 4567788899999888899999 99999996 5559999999999999999864 244442 334433211
Q ss_pred CCCc-ee---------------------------------eeeee--cccc-------------------------chhh
Q 007511 353 PGTT-LG---------------------------------IVRVE--GVLP-------------------------AQAK 371 (601)
Q Consensus 353 pgtT-~~---------------------------------~i~~~--~~l~-------------------------~~~~ 371 (601)
..+| .+ +.... .... ....
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~ 326 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAAS 326 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 1111 00 00000 0000 0124
Q ss_pred hhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE------
Q 007511 372 LFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY------ 434 (601)
Q Consensus 372 llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~------ 434 (601)
+++.+|+.. .++.+..|||||+||++||++| +|++++| |+.....+..+++.. +.+++.
T Consensus 327 ~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~ 402 (718)
T PLN03073 327 ILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHARE 402 (718)
T ss_pred HHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHH
Confidence 566777753 5778899999999999999999 9999999 788888888888764 345553
Q ss_pred -EEEeecCEEEeecceec
Q 007511 435 -VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 435 -~~~~ad~vl~l~~Gki~ 451 (601)
+..+||+++.|++|++.
T Consensus 403 ~l~~~~d~i~~l~~g~i~ 420 (718)
T PLN03073 403 FLNTVVTDILHLHGQKLV 420 (718)
T ss_pred HHHHhCCEEEEEECCEEE
Confidence 34578999999999874
No 379
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=8.1e-14 Score=135.97 Aligned_cols=168 Identities=20% Similarity=0.185 Sum_probs=121.3
Q ss_pred EEEeEeecCC-ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccc--cCCCCCc-------------ccccccee
Q 007511 283 FVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRGGD-------------GEEKNIVS 345 (601)
Q Consensus 283 lvSa~kg~G~-~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~--~~~~G~i-------------~~~~~~i~ 345 (601)
+.+.+...+. +++|+.+ ++.+..|++.+ +||||||||||.++|+|.- ..+.|.+ ...+..+.
T Consensus 6 I~dLhv~v~~~keILkgv-nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gif 84 (251)
T COG0396 6 IKDLHVEVEGKKEILKGV-NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIF 84 (251)
T ss_pred EeeeEEEecCchhhhcCc-ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCE
Confidence 3445555555 4999999 99999999877 9999999999999999976 4566744 34556678
Q ss_pred EeeecCC--CCCc-eeeeeeeccc------------cchhhhhccCCCcC--cCCccC-CCCHHHHHHhcccccc--CCC
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVL------------PAQAKLFDTPGLLH--PNQITT-RLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l------------~~~~~llDtpGL~~--~~~~~~-~LSgGe~qrv~iaraL--~P~ 405 (601)
..+|.|. ||.+ .++++..... ....+.++.+++.. .+|.++ -+||||++|..|+..+ +|+
T Consensus 85 LafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePk 164 (251)
T COG0396 85 LAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPK 164 (251)
T ss_pred EeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCC
Confidence 8899997 9987 5554432111 01145677888876 556554 5999999999999887 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEEE------ee--cCEEEeecceecc
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVTV------WA--SPYLPLHMGKTEN 452 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~~------~a--d~vl~l~~Gki~~ 452 (601)
+.+| |...-..+...+..+..+ +.+++.+++ |. |.+.+|-+|++..
T Consensus 165 l~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhvl~~GrIv~ 225 (251)
T COG0396 165 LAILDEPDSGLDIDALKIVAEGINALREE-GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225 (251)
T ss_pred EEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEEEECCEEEe
Confidence 9999 455556666777777666 555554443 23 7888888998844
No 380
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.48 E-value=9.2e-14 Score=172.10 Aligned_cols=155 Identities=16% Similarity=0.185 Sum_probs=114.0
Q ss_pred ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCceeeeeeeccccc-
Q 007511 293 KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTTLGIVRVEGVLPA- 368 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT~~~i~~~~~l~~- 368 (601)
+.+++++ ++.+.+|++ +++|+|||||||||++|+|+.++..|.+. ....++|++|.++ ++|.++|+.+......
T Consensus 439 ~~~l~~i-~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~-~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~ 516 (1490)
T TIGR01271 439 TPVLKNI-SFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK-HSGRISFSPQTSWIMPGTIKDNIIFGLSYDEY 516 (1490)
T ss_pred Ccceeee-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEEEEEeCCCccCCccHHHHHHhccccchH
Confidence 4578898 899999975 45999999999999999999999999765 3346899999987 6644888876432221
Q ss_pred -hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHH-HHHHH
Q 007511 369 -QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGL-MRMDV 425 (601)
Q Consensus 369 -~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~l-ir~~~ 425 (601)
..++++..++.. .......||||||||++||||+ +|++++| |+.....+... +....
T Consensus 517 ~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~ 596 (1490)
T TIGR01271 517 RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM 596 (1490)
T ss_pred HHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh
Confidence 122333333211 2334678999999999999999 9999999 77777777764 44332
Q ss_pred HhcCceEEEEE------EeecCEEEeecceec
Q 007511 426 EESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 426 ~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
+ +.|++.++ ..||+++.|++|++.
T Consensus 597 -~-~~tvilvtH~~~~~~~ad~ii~l~~g~i~ 626 (1490)
T TIGR01271 597 -S-NKTRILVTSKLEHLKKADKILLLHEGVCY 626 (1490)
T ss_pred -c-CCeEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 3 56776433 358999999999873
No 381
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=9.9e-14 Score=165.48 Aligned_cols=176 Identities=16% Similarity=0.225 Sum_probs=132.2
Q ss_pred ceEEEEEeEeec--CCccccchhhhhcccCC-cEEEECCCCCchhHHHHHHhccccCCCCCc------------cccccc
Q 007511 279 TKLHFVSAVKNW--GLKSLIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNI 343 (601)
Q Consensus 279 ~~V~lvSa~kg~--G~~~LL~~I~~l~~~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~ 343 (601)
++|.+.+..-+| +...+|++| ++.+.+| +|.+||.+|||||||+++|.++..+..|.+ ...|++
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~i-s~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGI-SFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCc-eEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc
Confidence 357777776666 456899999 8888887 688899999999999999999999999954 457889
Q ss_pred eeEeeecCC--CCCceeeeeeeccccch--hhhhccCCCcC--------cC----CccCCCCHHHHHHhcccccc--CCC
Q 007511 344 VSHLTEAPV--PGTTLGIVRVEGVLPAQ--AKLFDTPGLLH--------PN----QITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 344 i~~v~qs~~--pgtT~~~i~~~~~l~~~--~~llDtpGL~~--------~~----~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++.+||+|. .||-+.|+.-.....+. .+.+|..++.. .+ .--..+|-||||.+++|||| +.+
T Consensus 1216 lsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred CeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence 999999998 88888777643222221 23344433321 11 12356999999999999999 899
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecchHHHH
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTENACTMV 457 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~a~e~~ 457 (601)
+++| |+..-..|...+|....+ .|++.+. .-+|++++|++|++.+.+...
T Consensus 1296 ILvLDEATAsVD~~TD~lIQ~tIR~~F~d--cTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPETDALIQKTIREEFKD--CTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPA 1358 (1381)
T ss_pred EEEEecccccCChHHHHHHHHHHHHHhcC--CeEEEEeeccchhhhcCeEEEeeCCeEeecCChH
Confidence 9999 666667778888887754 5666322 357999999999997766443
No 382
>PRK12288 GTPase RsgA; Reviewed
Probab=99.47 E-value=1.9e-13 Score=144.96 Aligned_cols=153 Identities=20% Similarity=0.239 Sum_probs=98.7
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcC
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g 274 (601)
...|.+++|.+. +++.++ ..+.+++..+ +..+ .++++|+||+||++.. ....+..|...+ +..|
T Consensus 119 ANvD~vlIV~s~-~p~~s~-~~Ldr~L~~a-------~~~~-----i~~VIVlNK~DL~~~~-~~~~~~~~~~~y-~~~g 182 (347)
T PRK12288 119 ANIDQIVIVSAV-LPELSL-NIIDRYLVAC-------ETLG-----IEPLIVLNKIDLLDDE-GRAFVNEQLDIY-RNIG 182 (347)
T ss_pred EEccEEEEEEeC-CCCCCH-HHHHHHHHHH-------HhcC-----CCEEEEEECccCCCcH-HHHHHHHHHHHH-HhCC
Confidence 347887777664 455443 4567776532 1112 2788999999998642 112355565543 3444
Q ss_pred CCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCC
Q 007511 275 ISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPG 354 (601)
Q Consensus 275 ~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pg 354 (601)
..++.+|+.++.|...|++.+. ...++++|.+|||||||||+|+|......|.+.....+. -+
T Consensus 183 ----~~v~~vSA~tg~GideL~~~L~-----~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rG--------rH 245 (347)
T PRK12288 183 ----YRVLMVSSHTGEGLEELEAALT-----GRISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLG--------QH 245 (347)
T ss_pred ----CeEEEEeCCCCcCHHHHHHHHh-----hCCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCC--------cC
Confidence 3688999999999988887772 235677999999999999999988766666443211111 33
Q ss_pred CceeeeeeeccccchhhhhccCCCcCcC
Q 007511 355 TTLGIVRVEGVLPAQAKLFDTPGLLHPN 382 (601)
Q Consensus 355 tT~~~i~~~~~l~~~~~llDtpGL~~~~ 382 (601)
||.....+. +.+...++||||+....
T Consensus 246 TT~~~~l~~--l~~~~~liDTPGir~~~ 271 (347)
T PRK12288 246 TTTAARLYH--FPHGGDLIDSPGVREFG 271 (347)
T ss_pred ceeeEEEEE--ecCCCEEEECCCCCccc
Confidence 553333332 23345699999998744
No 383
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.47 E-value=3.1e-13 Score=138.04 Aligned_cols=161 Identities=24% Similarity=0.286 Sum_probs=106.2
Q ss_pred CCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCC
Q 007511 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI 275 (601)
Q Consensus 196 ~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~ 275 (601)
..|-+++||.+.+++.+ ...|.|+|..+ +.. +. ..++|+||+||++.... ...++. ..++..|
T Consensus 79 n~d~~iiIvs~~~P~~~-~~~ldR~Lv~a-------e~~----gi-~pvIvlnK~DL~~~~~~--~~~~~~-~~y~~~g- 141 (301)
T COG1162 79 NNDQAIIVVSLVDPDFN-TNLLDRYLVLA-------EAG----GI-EPVIVLNKIDLLDDEEA--AVKELL-REYEDIG- 141 (301)
T ss_pred ccceEEEEEeccCCCCC-HHHHHHHHHHH-------HHc----CC-cEEEEEEccccCcchHH--HHHHHH-HHHHhCC-
Confidence 47778889999998877 34677877643 222 23 46788999999975311 112333 2344555
Q ss_pred CccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCC
Q 007511 276 SKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGT 355 (601)
Q Consensus 276 ~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgt 355 (601)
..++.+|+..+.+...+...+ .++.++++|+||+|||||+|.|.+......|++++...+. -+|
T Consensus 142 ---y~v~~~s~~~~~~~~~l~~~l-----~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rG--------kHT 205 (301)
T COG1162 142 ---YPVLFVSAKNGDGLEELAELL-----AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRG--------RHT 205 (301)
T ss_pred ---eeEEEecCcCcccHHHHHHHh-----cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCC--------CCc
Confidence 578899999888887777666 3345566999999999999999987766666554332221 335
Q ss_pred ceeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHH
Q 007511 356 TLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQ 393 (601)
Q Consensus 356 T~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~ 393 (601)
|.....+. +.+...++||||+...+ ...++..+.
T Consensus 206 Tt~~~l~~--l~~gG~iiDTPGf~~~~--l~~~~~e~l 239 (301)
T COG1162 206 TTHVELFP--LPGGGWIIDTPGFRSLG--LAHLEPEDL 239 (301)
T ss_pred cceEEEEE--cCCCCEEEeCCCCCccC--cccCCHHHH
Confidence 54333332 44567899999998754 234555553
No 384
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.47 E-value=2.5e-13 Score=124.02 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=109.9
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCC---CC----------ccccccceeEee
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR---GG----------DGEEKNIVSHLT 348 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~---G~----------i~~~~~~i~~v~ 348 (601)
+.++.-+.+..-++.++ ++.+.+|+|+- +||+|||||||+.-+.|.+.+.- |. ....++.+|+++
T Consensus 5 l~nvsl~l~g~cLLa~~-n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLF 83 (213)
T COG4136 5 LKNVSLRLPGSCLLANV-NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILF 83 (213)
T ss_pred eeeeeecCCCceEEEee-eEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeee
Confidence 34455566777788888 88899998655 99999999999999999886542 32 144578899999
Q ss_pred ecCC--CCCc-eeeeeeecc--ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEeccc--
Q 007511 349 EAPV--PGTT-LGIVRVEGV--LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKAG-- 412 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~--l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~-- 412 (601)
|+++ |+.. .+|+.+... +.+ ....++..|+.. .++.+.+|||||+-||++.|+| .|+.++||+-
T Consensus 84 QD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 84 QDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred cccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 9998 8887 677666422 222 146788889987 7888999999999999999999 9999999533
Q ss_pred -----hHHHHHHHHHHHHHhcCceEE
Q 007511 413 -----HSIHIAGLMRMDVEESSVESI 433 (601)
Q Consensus 413 -----~~~~l~~lir~~~~~~g~tii 433 (601)
.+..+.+.+-......|..++
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv 189 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTV 189 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 333444444444444454443
No 385
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.44 E-value=3.4e-14 Score=167.87 Aligned_cols=184 Identities=14% Similarity=0.182 Sum_probs=149.5
Q ss_pred ceEEEEEeEeecCCcc-ccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc-------------cccccc
Q 007511 279 TKLHFVSAVKNWGLKS-LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD-------------GEEKNI 343 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~~-LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i-------------~~~~~~ 343 (601)
..++.-+..+.|+... +.+++ ++.+++|++.. .|+|||||||++|+|+|...|++|.+ ....+.
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~l-s~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~ 641 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGL-SFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQ 641 (885)
T ss_pred ceEEEcceeeeecchhhhhcce-EEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhh
Confidence 4567778888898877 88888 88888888766 99999999999999999999999954 125567
Q ss_pred eeEeeecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 344 VSHLTEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 344 i~~v~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
+||.||... +.+| ++.+.+.+.+.+ ..++++.+|+.. .++.+..+|||+++|+..|.++ +|++++
T Consensus 642 iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~ 721 (885)
T KOG0059|consen 642 LGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVIL 721 (885)
T ss_pred cccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence 999999876 6777 887777655544 167899999987 7888999999999999999998 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeecceecc--hHHHHHHHcCCc
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKTEN--ACTMVEKHFGRQ 464 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki~~--a~e~~~~~~g~~ 464 (601)
| ||..+.+++.+++...+++. .++ ++...|+|+..|.+|++.- ..+-++.++|..
T Consensus 722 LDEPstGmDP~arr~lW~ii~~~~k~g~-aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~g 792 (885)
T KOG0059|consen 722 LDEPSTGLDPKARRHLWDIIARLRKNGK-AIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRYGSG 792 (885)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhcCC-EEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhcCCc
Confidence 9 89999999999999887643 555 4556899999999999733 234455666653
No 386
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.44 E-value=4.2e-13 Score=139.53 Aligned_cols=154 Identities=30% Similarity=0.468 Sum_probs=106.4
Q ss_pred HHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHH
Q 007511 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (601)
Q Consensus 188 ~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~ 267 (601)
+.+.+.++..|||++|+||+|+.++..+.+.+.+..+ .||+ ..|+|+||+||+|. +.+.+|+.
T Consensus 138 ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~------------~gnK-kLILVLNK~DLVPr----Ev~e~Wl~ 200 (435)
T KOG2484|consen 138 KEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA------------HGNK-KLILVLNKIDLVPR----EVVEKWLV 200 (435)
T ss_pred HHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc------------cCCc-eEEEEeehhccCCH----HHHHHHHH
Confidence 4445556679999999999999999999999988643 1343 79999999999996 57899998
Q ss_pred HHHHHcCCCccceEEEEEeEeec-------------CCccccchhhhhcccCC-----cEEEECCCCCchhHHHHHHhcc
Q 007511 268 QRAREDGISKITKLHFVSAVKNW-------------GLKSLIDDVVDLAGKRG-----NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 268 ~~~~~~g~~~~~~V~lvSa~kg~-------------G~~~LL~~I~~l~~~~G-----~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
++.++. ..|.+...+... |...+++-+.++.-.++ .+.+||-.|+|||++||.|..-
T Consensus 201 YLr~~~-----ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~ 275 (435)
T KOG2484|consen 201 YLRREG-----PTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRR 275 (435)
T ss_pred HHHhhC-----CcceeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHh
Confidence 865443 234343333222 22333333323322211 4677999999999999999854
Q ss_pred ccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcC
Q 007511 330 VDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (601)
Q Consensus 330 ~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~ 380 (601)
-- ....+.||+|.....+. ++....++|.||+..
T Consensus 276 k~---------------C~vg~~pGvT~smqeV~--Ldk~i~llDsPgiv~ 309 (435)
T KOG2484|consen 276 KA---------------CNVGNVPGVTRSMQEVK--LDKKIRLLDSPGIVP 309 (435)
T ss_pred cc---------------ccCCCCccchhhhhhee--ccCCceeccCCceee
Confidence 32 34445689986665553 556688999999975
No 387
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.41 E-value=1.7e-13 Score=151.96 Aligned_cols=167 Identities=18% Similarity=0.160 Sum_probs=118.4
Q ss_pred EEEEEeEeecCC-ccccchhhhhcccCC-cEEEECCCCCchhHHHHHHhccccCCCCCccc-cccceeEeeecCC---CC
Q 007511 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGE-EKNIVSHLTEAPV---PG 354 (601)
Q Consensus 281 V~lvSa~kg~G~-~~LL~~I~~l~~~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~-~~~~i~~v~qs~~---pg 354 (601)
+.+.++.++|+. +.+++++ ++.+.+| +|++||+||+||||||++|+|...+.+|.+.. ..-.+||..|... +.
T Consensus 322 l~~~~~~~~y~~~~~l~~~~-s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~ 400 (530)
T COG0488 322 LEFENVSKGYDGGRLLLKDL-SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPD 400 (530)
T ss_pred EEEeccccccCCCceeecCc-eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCcc
Confidence 446788888865 5899999 8888777 58889999999999999999999999887642 2356899988763 33
Q ss_pred Cc-eeeeeeeccc---cchhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHH
Q 007511 355 TT-LGIVRVEGVL---PAQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAG 419 (601)
Q Consensus 355 tT-~~~i~~~~~l---~~~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~ 419 (601)
.| .+.+.-...- .....++..+|+.. ..+.+..||||||.|+++|+.+ +|.+|+| |......+..
T Consensus 401 ~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~ 480 (530)
T COG0488 401 KTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEE 480 (530)
T ss_pred CcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHH
Confidence 34 4443322110 11246788888876 6778999999999999999998 8999999 3333333333
Q ss_pred HHHHHHHhcCceEE-------EEEEeecCEEEeecceecch
Q 007511 420 LMRMDVEESSVESI-------YVTVWASPYLPLHMGKTENA 453 (601)
Q Consensus 420 lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki~~a 453 (601)
.+... ..+++ ++..+|++++.+.. .+...
T Consensus 481 aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~ 516 (530)
T COG0488 481 ALLDF----EGTVLLVSHDRYFLDRVATRIWLVED-KVEEF 516 (530)
T ss_pred HHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEc
Confidence 33322 33455 44567888888886 55443
No 388
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.38 E-value=1.5e-12 Score=130.55 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=98.3
Q ss_pred ccccchhhhhcccCCcEEE-ECCCCCchhHHH-HHHhcccc--------C----CCCCc--cc---cc-cceeEeeecCC
Q 007511 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLL-NAIAKSVD--------A----GRGGD--GE---EK-NIVSHLTEAPV 352 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLL-n~L~g~~~--------~----~~G~i--~~---~~-~~i~~v~qs~~ 352 (601)
..+++++ ++.+.+|+++. +|+||||||||+ ..+...-. + ..|.. .+ .+ ....+..+.+.
T Consensus 8 ~~~l~~v-sl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 8 EHNLKNV-DVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhccccc-eeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence 3578888 89999998766 999999999995 44331000 0 00000 00 00 11122222221
Q ss_pred ----CCCceeee----ee-e--cc---ccchhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CC--CEEEe---
Q 007511 353 ----PGTTLGIV----RV-E--GV---LPAQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KP--RTYRI--- 409 (601)
Q Consensus 353 ----pgtT~~~i----~~-~--~~---l~~~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P--~lllL--- 409 (601)
|..+...+ .+ . .. .....++++.+|+.. .++.+..||+||+||+++|++| +| ++++|
T Consensus 87 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 87 TSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 22121000 00 0 00 001145678888864 6888999999999999999999 76 59988
Q ss_pred ----ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEe------ecceec
Q 007511 410 ----KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPL------HMGKTE 451 (601)
Q Consensus 410 ----D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l------~~Gki~ 451 (601)
|+.....+..+++....+ |.+++.++ .+||++++| ++|++.
T Consensus 167 t~gLD~~~~~~l~~~l~~~~~~-g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv 223 (226)
T cd03270 167 SIGLHPRDNDRLIETLKRLRDL-GNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIV 223 (226)
T ss_pred ccCCCHHHHHHHHHHHHHHHhC-CCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEE
Confidence 788889999999887655 66766333 479999999 777764
No 389
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.38 E-value=1.2e-11 Score=135.45 Aligned_cols=158 Identities=25% Similarity=0.289 Sum_probs=109.8
Q ss_pred hhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH
Q 007511 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (601)
Q Consensus 182 ~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~ 261 (601)
+.+.+..+...++..+|+|++|+|+.+.....+..+.+++.+. + .|+++|+||+|+..... .
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~----------~-----~piilVvNK~D~~~~~~---~ 125 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKS----------G-----KPVILVANKIDGKKEDA---V 125 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh----------C-----CCEEEEEECccCCcccc---c
Confidence 4455556666777889999999999987666666677776531 2 38999999999975431 1
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcccC----------CcEEEECCCCCchhHHHHHHhcccc
Q 007511 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR----------GNVWAIGAQNAGKSTLLNAIAKSVD 331 (601)
Q Consensus 262 l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~----------G~v~ivG~nGaGKSTLLn~L~g~~~ 331 (601)
..+ +...| +.+++.+|+.++.|...+++.+....... -.++++|..|+|||||+|.|+|..
T Consensus 126 ~~~-----~~~lg---~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~- 196 (429)
T TIGR03594 126 AAE-----FYSLG---FGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE- 196 (429)
T ss_pred HHH-----HHhcC---CCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC-
Confidence 111 12333 46789999999999998888875443211 147789999999999999999743
Q ss_pred CCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcC
Q 007511 332 AGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (601)
Q Consensus 332 ~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~ 380 (601)
....+..|+||.+.+.......+ ...++||||+..
T Consensus 197 --------------~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~ 232 (429)
T TIGR03594 197 --------------RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRR 232 (429)
T ss_pred --------------eeecCCCCCceECcEeEEEEECCcEEEEEECCCccc
Confidence 12334568888766544322222 357899999975
No 390
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=1.2e-11 Score=137.05 Aligned_cols=158 Identities=27% Similarity=0.287 Sum_probs=103.0
Q ss_pred hhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH
Q 007511 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (601)
Q Consensus 182 ~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~ 261 (601)
+.+.+..+...++..+|+|++|+|+.+.....+..+.+++... + .|+++|+||+|+.... ..
T Consensus 103 ~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~--------------~-~piilV~NK~Dl~~~~---~~ 164 (472)
T PRK03003 103 LQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRS--------------G-KPVILAANKVDDERGE---AD 164 (472)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--------------C-CCEEEEEECccCCccc---hh
Confidence 3334445555667789999999999987654445555555421 1 3899999999986432 11
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhccc----------CCcEEEECCCCCchhHHHHHHhcccc
Q 007511 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK----------RGNVWAIGAQNAGKSTLLNAIAKSVD 331 (601)
Q Consensus 262 l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~----------~G~v~ivG~nGaGKSTLLn~L~g~~~ 331 (601)
..+ . ...| +...+.+||.++.|..++++.+...... .-.++++|.+|||||||+|.|++..
T Consensus 165 ~~~----~-~~~g---~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~- 235 (472)
T PRK03003 165 AAA----L-WSLG---LGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEE- 235 (472)
T ss_pred hHH----H-HhcC---CCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCC-
Confidence 111 1 1223 3456789999999999888776433211 1257889999999999999999743
Q ss_pred CCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcC
Q 007511 332 AGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (601)
Q Consensus 332 ~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~ 380 (601)
+...++.|+||.+.+.......+ ...++||+|+..
T Consensus 236 --------------~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 236 --------------RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRR 271 (472)
T ss_pred --------------cccccCCCCccCCcceEEEEECCEEEEEEECCCccc
Confidence 12234568888765443222222 246899999864
No 391
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=2.4e-13 Score=126.61 Aligned_cols=138 Identities=18% Similarity=0.219 Sum_probs=101.2
Q ss_pred cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc--------------------cccccceeEeeecCC
Q 007511 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD--------------------GEEKNIVSHLTEAPV 352 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i--------------------~~~~~~i~~v~qs~~ 352 (601)
.+++++ ++.+..|++.+ -|++|+||||||++|.+.+.|++|.+ ...++.+||+.|.-.
T Consensus 25 pV~~~v-slsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 25 PVLRNV-SLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeece-eEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 478888 88888887655 89999999999999999999999965 112345677766432
Q ss_pred --CCCc-eeeeeeecccc---------chhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 353 --PGTT-LGIVRVEGVLP---------AQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 353 --pgtT-~~~i~~~~~l~---------~~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
|... ++.+..+..-. ....++..+.+.. .+-.+..+||||||||.|||.+ +-.+++|
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 4433 44333221111 1146788888876 4556889999999999999998 7778887
Q ss_pred ccchHHHHHHHHHHHHHhcCceEE
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESI 433 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii 433 (601)
|..++..+.++++..... |.+++
T Consensus 184 Da~Nr~vVveli~e~Ka~-GaAlv 206 (235)
T COG4778 184 DATNRAVVVELIREAKAR-GAALV 206 (235)
T ss_pred cccchHHHHHHHHHHHhc-CceEE
Confidence 788899999999987665 65554
No 392
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.36 E-value=1.5e-11 Score=134.83 Aligned_cols=158 Identities=23% Similarity=0.289 Sum_probs=107.7
Q ss_pred hhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH
Q 007511 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (601)
Q Consensus 182 ~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~ 261 (601)
+...+..+...++..+|+|++|+|+.+.....+..+.+++... + .|+++|+||+|+.... ..
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~----------~-----~piilv~NK~D~~~~~---~~ 127 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS----------N-----KPVILVVNKVDGPDEE---AD 127 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------C-----CcEEEEEECccCccch---hh
Confidence 4444555556667789999999999987666566666666531 2 3899999999965321 12
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcc---------cCCcEEEECCCCCchhHHHHHHhccccC
Q 007511 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG---------KRGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 262 l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~---------~~G~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
..++ ...| +.+++.+|+.++.|...+++.+..... ..-.++++|.+|+|||||+|+|+|..
T Consensus 128 ~~~~-----~~lg---~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~-- 197 (435)
T PRK00093 128 AYEF-----YSLG---LGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE-- 197 (435)
T ss_pred HHHH-----HhcC---CCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCC--
Confidence 2222 1233 346788999999999998888744111 11257889999999999999999753
Q ss_pred CCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcC
Q 007511 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (601)
Q Consensus 333 ~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~ 380 (601)
.+..++.||+|.+.+.......+ ...++||||+..
T Consensus 198 -------------~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~ 233 (435)
T PRK00093 198 -------------RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRR 233 (435)
T ss_pred -------------ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCC
Confidence 22345568899777654332222 357899999965
No 393
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.35 E-value=1.3e-12 Score=137.95 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=103.8
Q ss_pred CCcEE-EECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC---CCCceeeeeeecc--ccc---hhhhhccC
Q 007511 306 RGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV---PGTTLGIVRVEGV--LPA---QAKLFDTP 376 (601)
Q Consensus 306 ~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~---pgtT~~~i~~~~~--l~~---~~~llDtp 376 (601)
.|+|. ++|+||.|||||++.|+|.+.|++|. ...-+++|-||.-. ++|..+.+.-... +.. ..++++-+
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl 443 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL 443 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhccccCCCCC--CccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCcc
Confidence 45554 49999999999999999999999997 44556788887554 3433333322110 111 25678888
Q ss_pred CCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEE-------EEEEee
Q 007511 377 GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWA 439 (601)
Q Consensus 377 GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~a 439 (601)
.|.. .++.+..|||||.|||+||.+| ++++|+| |..++..+...||......+.+.+ .+..++
T Consensus 444 ~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvs 523 (591)
T COG1245 444 NLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVS 523 (591)
T ss_pred chHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhh
Confidence 8877 7889999999999999999999 8899999 788899999999998877665544 233456
Q ss_pred cCEEEee
Q 007511 440 SPYLPLH 446 (601)
Q Consensus 440 d~vl~l~ 446 (601)
|+++++.
T Consensus 524 Dr~ivF~ 530 (591)
T COG1245 524 DRLIVFE 530 (591)
T ss_pred ceEEEEe
Confidence 7777664
No 394
>PRK01889 GTPase RsgA; Reviewed
Probab=99.33 E-value=7.3e-12 Score=133.68 Aligned_cols=148 Identities=28% Similarity=0.348 Sum_probs=95.6
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
+...|.|++|+++. ++.+ ...+.++|..+ +..| . ++++|+||+||++. .....+|+... ..
T Consensus 110 aANvD~vliV~s~~-p~~~-~~~ldr~L~~a-------~~~~----i-~piIVLNK~DL~~~---~~~~~~~~~~~--~~ 170 (356)
T PRK01889 110 AANVDTVFIVCSLN-HDFN-LRRIERYLALA-------WESG----A-EPVIVLTKADLCED---AEEKIAEVEAL--AP 170 (356)
T ss_pred EEeCCEEEEEEecC-CCCC-hhHHHHHHHHH-------HHcC----C-CEEEEEEChhcCCC---HHHHHHHHHHh--CC
Confidence 34689999999984 3322 23677776643 2222 2 57889999999864 12223444333 22
Q ss_pred CCCccceEEEEEeEeecCCccccchhhhhcccCC-cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV 352 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~ 352 (601)
| ..|+.+|+.++.|...|...+ .+| .++++|.+|+|||||+|+|+|...+..|.+..... ..
T Consensus 171 g----~~Vi~vSa~~g~gl~~L~~~L-----~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~--------~g 233 (356)
T PRK01889 171 G----VPVLAVSALDGEGLDVLAAWL-----SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDS--------KG 233 (356)
T ss_pred C----CcEEEEECCCCccHHHHHHHh-----hcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCC--------CC
Confidence 2 478999999999988777766 345 56779999999999999999999888885432111 11
Q ss_pred CCCc-eeeeeeeccccchhhhhccCCCcC
Q 007511 353 PGTT-LGIVRVEGVLPAQAKLFDTPGLLH 380 (601)
Q Consensus 353 pgtT-~~~i~~~~~l~~~~~llDtpGL~~ 380 (601)
.++| ...+.. +.....++|+||+..
T Consensus 234 ~~tt~~~~l~~---l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 234 RHTTTHRELHP---LPSGGLLIDTPGMRE 259 (356)
T ss_pred cchhhhccEEE---ecCCCeecCCCchhh
Confidence 2234 222221 233457899999975
No 395
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.8e-12 Score=134.49 Aligned_cols=170 Identities=15% Similarity=0.199 Sum_probs=114.4
Q ss_pred ceEEEEEeEeecCC-ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 279 TKLHFVSAVKNWGL-KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 279 ~~V~lvSa~kg~G~-~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
..|.+.++...|+. +.++.++ ++.+..|. +++||++|+||||+++.|..++.+.+|.+ ...++.|
T Consensus 261 g~v~F~~V~F~y~~~r~iL~~i-sf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aI 339 (497)
T COG5265 261 GAVAFINVSFAYDPRRPILNGI-SFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred ceEEEEEEEeeccccchhhcCc-cccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence 45778888888865 5789999 88888775 67799999999999999999999999965 2356678
Q ss_pred eEeeecCC-CCCc-eeeeeeeccccch---hh----------hhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV-PGTT-LGIVRVEGVLPAQ---AK----------LFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~-pgtT-~~~i~~~~~l~~~---~~----------llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
|.+||... ..-| ..++.+...-... .. +-..|...+ -....-.|||||+|||++||++ +|+
T Consensus 340 g~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~ 419 (497)
T COG5265 340 GIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPP 419 (497)
T ss_pred CcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCC
Confidence 88888765 2222 4444443211111 11 111221111 1222345999999999999999 999
Q ss_pred EEEecc-------chHHHHHHHHHHHHHhcCceEE-E-----EEEeecCEEEeecceec
Q 007511 406 TYRIKA-------GHSIHIAGLMRMDVEESSVESI-Y-----VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 406 lllLD~-------~~~~~l~~lir~~~~~~g~tii-~-----~~~~ad~vl~l~~Gki~ 451 (601)
++++|+ .....+...++.... |.|.+ . ...-||.++++++|++.
T Consensus 420 il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrlsti~~adeiivl~~g~i~ 476 (497)
T COG5265 420 ILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTIIDADEIIVLDNGRIV 476 (497)
T ss_pred EEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhhhccCCceEEEeeCCEEE
Confidence 999954 344455555555442 44444 2 22357999999999984
No 396
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.31 E-value=1.2e-11 Score=132.26 Aligned_cols=156 Identities=26% Similarity=0.360 Sum_probs=107.4
Q ss_pred HHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHH
Q 007511 187 GRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWV 266 (601)
Q Consensus 187 ~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~ 266 (601)
=++++..++..|+||.||||+++..-+.+.+.+++.... .++ ..+|++||+||+|+ .....|.
T Consensus 165 WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d------------~~K-~~~LLvNKaDLl~~----~qr~aWa 227 (562)
T KOG1424|consen 165 WRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD------------PSK-ANVLLVNKADLLPP----EQRVAWA 227 (562)
T ss_pred HHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccc------------ccc-ceEEEEehhhcCCH----HHHHHHH
Confidence 478999999999999999999999999999999987531 122 47899999999985 4667887
Q ss_pred HHHHHHcCCCccceEEEEEeEeec----------------CCccccc------------h----------hhhh------
Q 007511 267 RQRAREDGISKITKLHFVSAVKNW----------------GLKSLID------------D----------VVDL------ 302 (601)
Q Consensus 267 ~~~~~~~g~~~~~~V~lvSa~kg~----------------G~~~LL~------------~----------I~~l------ 302 (601)
.++-+ .+ -.+++.||.-.. +...... . +...
T Consensus 228 ~YF~~-~n----i~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~ 302 (562)
T KOG1424|consen 228 EYFRQ-NN----IPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAM 302 (562)
T ss_pred HHHHh-cC----ceEEEEecccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhcc
Confidence 76643 32 235555554410 0000000 0 0000
Q ss_pred ----ccc--C--CcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhc
Q 007511 303 ----AGK--R--GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFD 374 (601)
Q Consensus 303 ----~~~--~--G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llD 374 (601)
... + -.|.+||-+|||||++||+|.|.- .|.+|..||-|..+..+. +.....++|
T Consensus 303 ~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~K---------------kVsVS~TPGkTKHFQTi~--ls~~v~LCD 365 (562)
T KOG1424|consen 303 EPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRK---------------KVSVSSTPGKTKHFQTIF--LSPSVCLCD 365 (562)
T ss_pred ccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCc---------------eeeeecCCCCcceeEEEE--cCCCceecC
Confidence 000 0 135559999999999999999743 456677899998777764 555678999
Q ss_pred cCCCcCc
Q 007511 375 TPGLLHP 381 (601)
Q Consensus 375 tpGL~~~ 381 (601)
.|||.-+
T Consensus 366 CPGLVfP 372 (562)
T KOG1424|consen 366 CPGLVFP 372 (562)
T ss_pred CCCcccc
Confidence 9999754
No 397
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.29 E-value=5.4e-11 Score=138.06 Aligned_cols=158 Identities=25% Similarity=0.266 Sum_probs=105.3
Q ss_pred hhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH
Q 007511 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (601)
Q Consensus 182 ~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~ 261 (601)
+...+..+...++..+|+|++|+|+.+.....+..+.+++... + .|+++|+||+|+.... ..
T Consensus 340 ~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~--------------~-~pvIlV~NK~D~~~~~---~~ 401 (712)
T PRK09518 340 IDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA--------------G-KPVVLAVNKIDDQASE---YD 401 (712)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc--------------C-CCEEEEEECcccccch---hh
Confidence 4444555666677889999999999987666666666665421 2 3899999999986421 11
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhccc----------C--CcEEEECCCCCchhHHHHHHhcc
Q 007511 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK----------R--GNVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 262 l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~----------~--G~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.. .+ ...| +..++.+|+.++.|+.++++.+...... . -.++++|.+|||||||+|.|++.
T Consensus 402 ~~----~~-~~lg---~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~ 473 (712)
T PRK09518 402 AA----EF-WKLG---LGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHE 473 (712)
T ss_pred HH----HH-HHcC---CCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence 11 11 1223 3456789999999999888776433211 1 25788999999999999999974
Q ss_pred ccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcC
Q 007511 330 VDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (601)
Q Consensus 330 ~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~ 380 (601)
. ....+..|+||.+.+.......+ ...++||+|+..
T Consensus 474 ~---------------~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~ 510 (712)
T PRK09518 474 E---------------RAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKR 510 (712)
T ss_pred c---------------ccccCCCCCCCcCcceeEEEECCCEEEEEECCCccc
Confidence 3 11234568888766543222222 245899999865
No 398
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.29 E-value=6.8e-12 Score=123.12 Aligned_cols=137 Identities=14% Similarity=0.111 Sum_probs=93.2
Q ss_pred hhcccCCcEEEECCCCCchhHHHHHHhccccCCCC---------Cc---------cccccceeEeeecCCCCCceeeeee
Q 007511 301 DLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG---------GD---------GEEKNIVSHLTEAPVPGTTLGIVRV 362 (601)
Q Consensus 301 ~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G---------~i---------~~~~~~i~~v~qs~~pgtT~~~i~~ 362 (601)
++.+.+|.++++|+||+|||||+++|.|+..+..| .+ ....+.+++++|.+.......
T Consensus 17 ~l~~~~g~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~---- 92 (197)
T cd03278 17 TIPFPPGLTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII---- 92 (197)
T ss_pred eeecCCCcEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE----
Confidence 44556676677999999999999999998755422 11 112456889998875321110
Q ss_pred eccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc------CCCEEEe-------ccchHHHHHHHHHHHHHhcC
Q 007511 363 EGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL------KPRTYRI-------KAGHSIHIAGLMRMDVEESS 429 (601)
Q Consensus 363 ~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL------~P~lllL-------D~~~~~~l~~lir~~~~~~g 429 (601)
......++++..+. .++.+..||+||+||+++|+++ .|++++| |+.....+..+++.... +
T Consensus 93 --~~~~~~~~l~~~~~--~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~ 166 (197)
T cd03278 93 --SQGDVSEIIEAPGK--KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--E 166 (197)
T ss_pred --ehhhHHHHHhCCCc--cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--C
Confidence 11223566666322 5677899999999999999986 3488888 78888889998887653 3
Q ss_pred ceEEEE------EEeecCEEEeec
Q 007511 430 VESIYV------TVWASPYLPLHM 447 (601)
Q Consensus 430 ~tii~~------~~~ad~vl~l~~ 447 (601)
.+++.+ ..+||+++.++.
T Consensus 167 ~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 167 TQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CEEEEEECCHHHHhhcceEEEEEe
Confidence 455522 246777777764
No 399
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.28 E-value=8.1e-12 Score=138.51 Aligned_cols=138 Identities=20% Similarity=0.297 Sum_probs=105.4
Q ss_pred ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCcccc-ccceeEeeecCC-CCCc-eeeeeeecccc-
Q 007511 293 KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPV-PGTT-LGIVRVEGVLP- 367 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~-~~~i~~v~qs~~-pgtT-~~~i~~~~~l~- 367 (601)
..+++++ ++.+.+|+ +.+.|+||||||||+++|+|+.+..+|.+... ...+-+++|.|+ |.-| ++.+.++....
T Consensus 406 ~~ll~~l-~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~ 484 (604)
T COG4178 406 QTLLSEL-NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPD 484 (604)
T ss_pred Ceeeccc-eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCC
Confidence 4788888 88888885 67799999999999999999999999976433 445789999998 4445 77777764331
Q ss_pred -c---hhhhhccCCCcC-------cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHh
Q 007511 368 -A---QAKLFDTPGLLH-------PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEE 427 (601)
Q Consensus 368 -~---~~~llDtpGL~~-------~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~ 427 (601)
+ ..+++...||.+ .++--..||+|||||+++||.| +|+.++| |+.....+.++++....
T Consensus 485 ~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp- 563 (604)
T COG4178 485 FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP- 563 (604)
T ss_pred CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCC-
Confidence 1 145667777754 3344567999999999999999 9999999 77777888888876543
Q ss_pred cCceEE
Q 007511 428 SSVESI 433 (601)
Q Consensus 428 ~g~tii 433 (601)
+.++|
T Consensus 564 -~~tvI 568 (604)
T COG4178 564 -DATVI 568 (604)
T ss_pred -CCEEE
Confidence 34444
No 400
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.27 E-value=5.5e-12 Score=125.19 Aligned_cols=157 Identities=12% Similarity=0.125 Sum_probs=101.2
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCc-ccc-ccceeEeeecCC--CCC
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGD-GEE-KNIVSHLTEAPV--PGT 355 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i-~~~-~~~i~~v~qs~~--pgt 355 (601)
.+.+.+.+ .|+...+++++ ++ .-++++|+|||||||||++|.... |.. ... .+.++++++... |.+
T Consensus 5 ~l~l~nfk-~~~~~~~l~~~-~~----~i~~ivGpNGaGKSTll~~i~~~~----G~~~~~~~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 5 KLVLENFK-SYAGEQVIGPF-HK----SFSAIVGPNGSGKSNVIDSMLFVF----GFRASKMRQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred EEEEECcc-cCCCCeeeccC-CC----CeEEEECCCCCCHHHHHHHHHHHh----ccCHHHhhhhhHHHHhcCCCCCCCC
Confidence 44555554 67777777776 33 345669999999999999998432 211 111 235666666543 444
Q ss_pred c-eeeeeeecccc-------------c------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--C----CCEEE
Q 007511 356 T-LGIVRVEGVLP-------------A------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--K----PRTYR 408 (601)
Q Consensus 356 T-~~~i~~~~~l~-------------~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~----P~lll 408 (601)
| .+...+..... . ..++.+..++.. .++.+..||+||+||+++|+++ . |++++
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ili 154 (212)
T cd03274 75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYV 154 (212)
T ss_pred ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence 4 44433322110 0 023445566654 5667889999999999999977 2 68998
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEE------EEEeecCEEEeecc
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIY------VTVWASPYLPLHMG 448 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~------~~~~ad~vl~l~~G 448 (601)
+ |+.....+..+++.... +.+++. +..+||+++.++..
T Consensus 155 lDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~~~~~~~d~v~~~~~~ 205 (212)
T cd03274 155 MDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRNNMFELADRLVGIYKT 205 (212)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcHHHHHhCCEEEEEEec
Confidence 8 88889999999998643 334442 34578888887643
No 401
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.27 E-value=9.7e-12 Score=128.65 Aligned_cols=152 Identities=30% Similarity=0.447 Sum_probs=109.8
Q ss_pred HhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHH
Q 007511 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (601)
Q Consensus 190 l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~ 269 (601)
+...+...||||+|+||+|+.|+....|.++|.+. +. .+ .+|+|+|||||+|.. ....|++.+
T Consensus 207 LyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke--------~p----hK-Hli~vLNKvDLVPtw----vt~~Wv~~l 269 (572)
T KOG2423|consen 207 LYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKE--------KP----HK-HLIYVLNKVDLVPTW----VTAKWVRHL 269 (572)
T ss_pred HHHhhcccceeEEeeeccCCcccccHHHHHHHhhc--------CC----cc-eeEEEeeccccccHH----HHHHHHHHH
Confidence 44556779999999999999999999999998752 11 22 699999999999975 357899887
Q ss_pred HHHcCCCccceEEEEEeEeecCCccccchhhhhc---ccCC--cEEEECCCCCchhHHHHHHhccccCCCCCccccccce
Q 007511 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVDLA---GKRG--NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIV 344 (601)
Q Consensus 270 ~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~---~~~G--~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i 344 (601)
.++.. .-.+..|..+.||...+++.+..+. ..+. .|.+||-+|+|||++||+|-...
T Consensus 270 SkeyP----TiAfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~Kk-------------- 331 (572)
T KOG2423|consen 270 SKEYP----TIAFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKK-------------- 331 (572)
T ss_pred hhhCc----ceeeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcc--------------
Confidence 66543 2245567888888877666654442 2233 45669999999999999997432
Q ss_pred eEeeecCCCCCc--eeeeeeeccccchhhhhccCCCcCc
Q 007511 345 SHLTEAPVPGTT--LGIVRVEGVLPAQAKLFDTPGLLHP 381 (601)
Q Consensus 345 ~~v~qs~~pgtT--~~~i~~~~~l~~~~~llDtpGL~~~ 381 (601)
..-..|.||-| ..++. +.....++|.||+..+
T Consensus 332 -VCkvAPIpGETKVWQYIt----LmkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 332 -VCKVAPIPGETKVWQYIT----LMKRIFLIDCPGVVYP 365 (572)
T ss_pred -cccccCCCCcchHHHHHH----HHhceeEecCCCccCC
Confidence 33456778877 33332 3345679999999863
No 402
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.23 E-value=3.7e-12 Score=119.28 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=95.9
Q ss_pred hcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEeeecCCCCCcee---eeeeecc
Q 007511 302 LAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHLTEAPVPGTTLG---IVRVEGV 365 (601)
Q Consensus 302 l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v~qs~~pgtT~~---~i~~~~~ 365 (601)
..+..|+++ +|||||||||||+-.|+|+. |.+|++ .+..+.-+|+.|...|-.-.- ++.....
T Consensus 20 ~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP 98 (248)
T COG4138 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQP 98 (248)
T ss_pred cccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCc
Confidence 344556654 49999999999999999987 455654 233444466666554332211 1111100
Q ss_pred cc----chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc-------CC--CEEEe-------ccchHHHHHHHHHHH
Q 007511 366 LP----AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL-------KP--RTYRI-------KAGHSIHIAGLMRMD 424 (601)
Q Consensus 366 l~----~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL-------~P--~lllL-------D~~~~~~l~~lir~~ 424 (601)
-. ...++.+.+++.+ ..+.+++|||||.|||-+|... +| +++++ |..+...+..++...
T Consensus 99 ~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~ 178 (248)
T COG4138 99 DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178 (248)
T ss_pred hHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHH
Confidence 00 1146778888887 7889999999999999998765 44 45666 666777777777777
Q ss_pred HHhcCceEEE-------EEEeecCEEEeeccee
Q 007511 425 VEESSVESIY-------VTVWASPYLPLHMGKT 450 (601)
Q Consensus 425 ~~~~g~tii~-------~~~~ad~vl~l~~Gki 450 (601)
... |.+++. ..+.||+++.+.+|++
T Consensus 179 c~~-G~~vims~HDLNhTLrhA~~~wLL~rG~l 210 (248)
T COG4138 179 CQQ-GLAIVMSSHDLNHTLRHAHRAWLLKRGKL 210 (248)
T ss_pred HhC-CcEEEEeccchhhHHHHHHHHHHHhcCeE
Confidence 766 766652 2345666666666665
No 403
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.7e-11 Score=133.58 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=122.7
Q ss_pred ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------ccccceeEeeecCC-----C
Q 007511 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EEKNIVSHLTEAPV-----P 353 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~~~~i~~v~qs~~-----p 353 (601)
...++++ +|.+.+|+|.. .|--|+|+|-|+++|.|..++..|++. ..+..++|++.+.- +
T Consensus 272 ~~~~~dv-Sf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 272 GGKVRDV-SFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred CCceeCc-eeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 3357788 79999998766 999999999999999998888888551 23346888887654 3
Q ss_pred CCc-eeeeeeec--------cccc------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 354 GTT-LGIVRVEG--------VLPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 354 gtT-~~~i~~~~--------~l~~------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
..+ .+|+.+.. .+.. ...+++.+++.. .++.+..||||.||+|.|||.| +|++++|
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTR 430 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTR 430 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCc
Confidence 344 45554430 0111 145677777765 6788999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeecceec
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki~ 451 (601)
|.+....+..+++.++.+ |.+++ ++..+|||+++|++|++.
T Consensus 431 GIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~ 480 (500)
T COG1129 431 GIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIV 480 (500)
T ss_pred CcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEE
Confidence 899999999999999988 67776 455699999999999973
No 404
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.19 E-value=5.9e-11 Score=119.92 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=47.6
Q ss_pred CCccCCCCHHHHHHhcccccc------CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEE------EEEEeecCE
Q 007511 382 NQITTRLTREEQKLVNINKEL------KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESI------YVTVWASPY 442 (601)
Q Consensus 382 ~~~~~~LSgGe~qrv~iaraL------~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii------~~~~~ad~v 442 (601)
+..+..||+||+||+++|+++ .|+++++ |+.....+...++.... +.+++ .+..+||++
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~~~~~~d~i 230 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPELLEVADKF 230 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHhhCCEE
Confidence 457889999999999999998 3789998 78888888888887643 44444 223467777
Q ss_pred EEee
Q 007511 443 LPLH 446 (601)
Q Consensus 443 l~l~ 446 (601)
+.+.
T Consensus 231 ~~l~ 234 (243)
T cd03272 231 YGVK 234 (243)
T ss_pred EEEE
Confidence 7664
No 405
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.19 E-value=5.4e-11 Score=118.09 Aligned_cols=137 Identities=16% Similarity=0.078 Sum_probs=85.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc-cCCCCCc-----------cccccceeEeeecCCCCCceeeeeeeccccchhhh---
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV-DAGRGGD-----------GEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKL--- 372 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~-~~~~G~i-----------~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~l--- 372 (601)
.+.++|+||+|||||+++|.+.+ ....+.. ......+++++|... ......+.. .+.. ..+
T Consensus 30 ~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~--~~~~~~r~~-gl~~-~~~~~~ 105 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGG--KKYRVERSR-GLDY-DQFTRI 105 (213)
T ss_pred EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECC--eEEEEEEec-CCCH-HHHHHh
Confidence 45669999999999999999543 1221111 112234566665542 222222221 1111 111
Q ss_pred --hccCCCcC-cCCccCCCCHHHHHHhcccccc--C----------CCEEEe-------ccchHHHHHHHHHHHHHhcCc
Q 007511 373 --FDTPGLLH-PNQITTRLTREEQKLVNINKEL--K----------PRTYRI-------KAGHSIHIAGLMRMDVEESSV 430 (601)
Q Consensus 373 --lDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~----------P~lllL-------D~~~~~~l~~lir~~~~~~g~ 430 (601)
+...++.. .++.+..||+||+||+++|+++ . |++++| |+.....+..++.....+ +.
T Consensus 106 ~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~ 184 (213)
T cd03279 106 VLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTE-NR 184 (213)
T ss_pred hhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CC
Confidence 22233433 5777899999999999999999 3 578888 677888888888877654 56
Q ss_pred eEEE-------EEEeecCEEEeecce
Q 007511 431 ESIY-------VTVWASPYLPLHMGK 449 (601)
Q Consensus 431 tii~-------~~~~ad~vl~l~~Gk 449 (601)
+++. +..++++++++++|-
T Consensus 185 tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 185 MVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred EEEEEECchHHHHhhCcEEEEEecCC
Confidence 6663 345677888777663
No 406
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.17 E-value=8.5e-11 Score=119.60 Aligned_cols=139 Identities=19% Similarity=0.180 Sum_probs=91.9
Q ss_pred cCCcEEEECCCCCchhHHHHHHhccccCCCC-Cc---------c------ccccceeEeeecCC-----------CCCc-
Q 007511 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG-GD---------G------EEKNIVSHLTEAPV-----------PGTT- 356 (601)
Q Consensus 305 ~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G-~i---------~------~~~~~i~~v~qs~~-----------pgtT- 356 (601)
.++.+++||+||||||||+++|++++.+..| .+ . .....+++++|.+. |..|
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4567888999999999999999998765432 11 0 11236788888742 3344
Q ss_pred eeeeeeecc----ccc-------hhhhhccCCCc--------------------C-cCCccCCCCHHHHHHhcccccc--
Q 007511 357 LGIVRVEGV----LPA-------QAKLFDTPGLL--------------------H-PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 357 ~~~i~~~~~----l~~-------~~~llDtpGL~--------------------~-~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
.+++..... +.+ ...+++.+|+. . .+..+..||+||+||+++|++|
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 333322110 111 14577888875 1 2467889999999999999976
Q ss_pred ----CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEe
Q 007511 403 ----KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPL 445 (601)
Q Consensus 403 ----~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l 445 (601)
.|+++++ |+.....+..+++... + |.+++.++ ..||+++-+
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~~~~~~~d~v~~~ 241 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKEGMFNNANVLFRT 241 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHHHHhCCEEEEE
Confidence 4689988 6777888888888764 3 55565333 345665544
No 407
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.14 E-value=9e-11 Score=115.83 Aligned_cols=136 Identities=16% Similarity=0.123 Sum_probs=88.1
Q ss_pred cccCCcEEEECCCCCchhHHHHHHh----ccccCCCCCc---------cccccceeEeeecCC-CCCc-------eeeee
Q 007511 303 AGKRGNVWAIGAQNAGKSTLLNAIA----KSVDAGRGGD---------GEEKNIVSHLTEAPV-PGTT-------LGIVR 361 (601)
Q Consensus 303 ~~~~G~v~ivG~nGaGKSTLLn~L~----g~~~~~~G~i---------~~~~~~i~~v~qs~~-pgtT-------~~~i~ 361 (601)
.+..|.+.++|+||+|||||+++|. |...+..|.+ ...+..++++++.+. ...+ .+++.
T Consensus 19 ~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~ 98 (204)
T cd03240 19 EFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVI 98 (204)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhcee
Confidence 3455667779999999999999994 8887766532 223446777887762 2222 22221
Q ss_pred eeccccchhhhhccCCCcCcCCccCCCCHHHHHH------hcccccc--CCCEEEe-------ccchHH-HHHHHHHHHH
Q 007511 362 VEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKL------VNINKEL--KPRTYRI-------KAGHSI-HIAGLMRMDV 425 (601)
Q Consensus 362 ~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qr------v~iaraL--~P~lllL-------D~~~~~-~l~~lir~~~ 425 (601)
+. ...++-+. .++.+..||+||+|| +++++++ +|+++++ |+.... .+.++++...
T Consensus 99 ~~----~~~~~~~~-----~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~ 169 (204)
T cd03240 99 FC----HQGESNWP-----LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERK 169 (204)
T ss_pred ee----chHHHHHH-----HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHH
Confidence 11 01111000 256788999999996 6788888 9999999 677778 8888888776
Q ss_pred HhcCceEEEEE------EeecCEEEeec
Q 007511 426 EESSVESIYVT------VWASPYLPLHM 447 (601)
Q Consensus 426 ~~~g~tii~~~------~~ad~vl~l~~ 447 (601)
.+.+.+++.++ ..||+++.+.+
T Consensus 170 ~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 170 SQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred hccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 54355555322 35677776643
No 408
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.13 E-value=2.3e-11 Score=126.57 Aligned_cols=168 Identities=14% Similarity=0.095 Sum_probs=102.5
Q ss_pred ceEEEEEeEeecCCcc-ccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccce
Q 007511 279 TKLHFVSAVKNWGLKS-LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIV 344 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~~-LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i 344 (601)
..+.+.++...|-... =+.-| ++.+.+|++++ +|.||||||||+..|+|+.+|++|++. ..|+-+
T Consensus 321 ~~lelrnvrfay~~~~FhvgPi-Nl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPI-NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred cceeeeeeeeccCcccceecce-eeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 4556666666664332 23445 67788898666 999999999999999999999999762 122223
Q ss_pred eEeeecCC--CCCc-eeeeeeeccccchhhhhccCCC------cCcCCccCCCCHHHHHHhcccccc--CCCEEEe----
Q 007511 345 SHLTEAPV--PGTT-LGIVRVEGVLPAQAKLFDTPGL------LHPNQITTRLTREEQKLVNINKEL--KPRTYRI---- 409 (601)
Q Consensus 345 ~~v~qs~~--pgtT-~~~i~~~~~l~~~~~llDtpGL------~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL---- 409 (601)
+-++.+.+ +.+- .+... ........++.+.+ .+.+-..-.||.||++|+++--|+ +.+++++
T Consensus 400 SavFsDyhLF~~ll~~e~~a---s~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWA 476 (546)
T COG4615 400 SAVFSDYHLFDQLLGPEGKA---SPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWA 476 (546)
T ss_pred HHHhhhHhhhHhhhCCccCC---ChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhh
Confidence 33333332 1111 11100 00011223333333 233334567999999999999998 7788888
Q ss_pred ---ccchHHHHHHHHHHHHHhcCceEEEEEE------eecCEEEeeccee
Q 007511 410 ---KAGHSIHIAGLMRMDVEESSVESIYVTV------WASPYLPLHMGKT 450 (601)
Q Consensus 410 ---D~~~~~~l~~lir~~~~~~g~tii~~~~------~ad~vl~l~~Gki 450 (601)
||.-+..+...+--+..+.|.|++.++. .|||.+.+.+|++
T Consensus 477 ADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~ 526 (546)
T COG4615 477 ADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQL 526 (546)
T ss_pred ccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCce
Confidence 7888888876655555555888764331 3455555555554
No 409
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.12 E-value=1.1e-11 Score=145.29 Aligned_cols=141 Identities=20% Similarity=0.278 Sum_probs=108.2
Q ss_pred CCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccC--CCCCc---------cccccceeEeeecCC--CCCc
Q 007511 291 GLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDA--GRGGD---------GEEKNIVSHLTEAPV--PGTT 356 (601)
Q Consensus 291 G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~--~~G~i---------~~~~~~i~~v~qs~~--pgtT 356 (601)
+.++||+++ +=.+.+|.. +++|.||||||||||.|+|...- -+|++ ...+|.+||+.|.+. |..|
T Consensus 802 ~~~qLL~~V-~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNV-SGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcC-ceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 667899999 666777854 55999999999999999987521 01221 234678999999887 8888
Q ss_pred -eeeeeeeccccc------------hhhhhccCCCcC-cCCccCC----CCHHHHHHhcccccc--CCCE-EEe------
Q 007511 357 -LGIVRVEGVLPA------------QAKLFDTPGLLH-PNQITTR----LTREEQKLVNINKEL--KPRT-YRI------ 409 (601)
Q Consensus 357 -~~~i~~~~~l~~------------~~~llDtpGL~~-~~~~~~~----LSgGe~qrv~iaraL--~P~l-llL------ 409 (601)
++-+++.+.++- ..++++.++|.. .+..++. ||.+||+|+.|+-+| +|.. ++|
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 777776554431 157888999986 5556666 999999999999999 9954 455
Q ss_pred -ccchHHHHHHHHHHHHHhcCceEE
Q 007511 410 -KAGHSIHIAGLMRMDVEESSVESI 433 (601)
Q Consensus 410 -D~~~~~~l~~lir~~~~~~g~tii 433 (601)
|...+..+..++|.++.. |.+|+
T Consensus 961 LDsqaA~~i~~~lrkla~t-GqtIl 984 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADT-GQTIL 984 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhc-CCeEE
Confidence 788889999999999986 77765
No 410
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1.3e-11 Score=132.08 Aligned_cols=166 Identities=20% Similarity=0.285 Sum_probs=104.5
Q ss_pred ceEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcccc--ccce--eEee--ecC
Q 007511 279 TKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE--KNIV--SHLT--EAP 351 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~--~~~i--~~v~--qs~ 351 (601)
.+|+..+..-.||.+.||..- ++....|+-|. ||+||+||||||++|+. |.+... ...+ .++. ++.
T Consensus 79 ~Di~~~~fdLa~G~k~LL~~a-~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~ 151 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGGKILLNKA-NLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSV 151 (582)
T ss_pred cceeeeeeeeeecchhhhcCC-ceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhh
Confidence 578888888889999999998 88888886655 99999999999999986 211000 0000 0000 000
Q ss_pred C-CCCc-eeeeeeecccc---chhh----hhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-ccchHHHH
Q 007511 352 V-PGTT-LGIVRVEGVLP---AQAK----LFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-KAGHSIHI 417 (601)
Q Consensus 352 ~-pgtT-~~~i~~~~~l~---~~~~----llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-D~~~~~~l 417 (601)
. -.+. .+.+.-...+. ...+ ++.-+|+.. ..+.+..||||.|-|+++|||| +|++|+| .|.+.+.+
T Consensus 152 l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchh
Confidence 0 1111 11111110000 1122 555788876 6778999999999999999999 9999999 46666666
Q ss_pred HHHHHHHH--HhcCceEE-------EEEEeecCEEEeecceec
Q 007511 418 AGLMRMDV--EESSVESI-------YVTVWASPYLPLHMGKTE 451 (601)
Q Consensus 418 ~~lir~~~--~~~g~tii-------~~~~~ad~vl~l~~Gki~ 451 (601)
..+.+... ..-+.|++ ++-..|..++-+|.-++.
T Consensus 232 ~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~kL~ 274 (582)
T KOG0062|consen 232 VAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLKLD 274 (582)
T ss_pred HHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhhhh
Confidence 66666431 22234554 344566667777766653
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=1e-10 Score=122.62 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=89.6
Q ss_pred EEEeEeec-CCccccchhhhhcccC-CcEEEECCCCCchhHHHHHHhccccCCCCCccc-cccceeEeeecCCCCCc---
Q 007511 283 FVSAVKNW-GLKSLIDDVVDLAGKR-GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGE-EKNIVSHLTEAPVPGTT--- 356 (601)
Q Consensus 283 lvSa~kg~-G~~~LL~~I~~l~~~~-G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~-~~~~i~~v~qs~~pgtT--- 356 (601)
+-++..+| |.+.|+..+ +|-+.- .+|++|||||+||||||+.|+|.+.|..|..+. .+-+||+.-|.....++
T Consensus 589 lH~VtFgy~gqkpLFkkl-dFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Ee 667 (807)
T KOG0066|consen 589 LHDVTFGYPGQKPLFKKL-DFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEE 667 (807)
T ss_pred cccccccCCCCCchhhcc-cccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhcccc
Confidence 34667778 667788888 665542 379999999999999999999999999997643 33457776665542222
Q ss_pred --eeeeeeeccc--cchhhhhccCCCcC-cC-CccCCCCHHHHHHhcccc-cc-CCCEEEe
Q 007511 357 --LGIVRVEGVL--PAQAKLFDTPGLLH-PN-QITTRLTREEQKLVNINK-EL-KPRTYRI 409 (601)
Q Consensus 357 --~~~i~~~~~l--~~~~~llDtpGL~~-~~-~~~~~LSgGe~qrv~iar-aL-~P~lllL 409 (601)
.+++.-.+.+ ......+-++||.. .+ -.+..|||||+-||++|. ++ .|++++|
T Consensus 668 tp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlIL 728 (807)
T KOG0066|consen 668 TPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLIL 728 (807)
T ss_pred CHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEe
Confidence 3332211112 22357788999975 33 346789999999999996 45 9999999
No 412
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.07 E-value=6e-10 Score=113.77 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=63.3
Q ss_pred hhhccCCCcC--cCCccCCCCHHHHHHhcccccc--C---CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 371 KLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--K---PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 371 ~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~---P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
++++.+||.. .++.+..|||||+||+.+|++| + |++++| |+.....+..+++....+ |.+++.++
T Consensus 151 ~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiit 229 (261)
T cd03271 151 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIE 229 (261)
T ss_pred HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Confidence 4567788875 6888999999999999999999 4 689998 788888999999887655 66776333
Q ss_pred ------EeecCEEEe------ecceec
Q 007511 437 ------VWASPYLPL------HMGKTE 451 (601)
Q Consensus 437 ------~~ad~vl~l------~~Gki~ 451 (601)
..||+++.| +.|++.
T Consensus 230 H~~~~i~~aD~ii~Lgp~~g~~~G~iv 256 (261)
T cd03271 230 HNLDVIKCADWIIDLGPEGGDGGGQVV 256 (261)
T ss_pred CCHHHHHhCCEEEEecCCcCCCCCEEE
Confidence 367888888 566653
No 413
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.06 E-value=5.2e-11 Score=128.33 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=86.6
Q ss_pred EEEEEeEeecCCc-cccchhhhhcccCC-cEEEECCCCCchhHHHHHHhccccCCCCCccc-cccceeEeeecCC--CCC
Q 007511 281 LHFVSAVKNWGLK-SLIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGE-EKNIVSHLTEAPV--PGT 355 (601)
Q Consensus 281 V~lvSa~kg~G~~-~LL~~I~~l~~~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~-~~~~i~~v~qs~~--pgt 355 (601)
+.+.++..+|..+ .++..+ ++.+..+ .+.+||||||||||||++++|.+.|..|.+.. ...++++.-|.-. -++
T Consensus 390 i~~~nv~F~y~~~~~iy~~l-~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl 468 (614)
T KOG0927|consen 390 IMVQNVSFGYSDNPMIYKKL-NFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDL 468 (614)
T ss_pred EEEeccccCCCCcchhhhhh-hcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCc
Confidence 4455667777654 577777 6766665 68889999999999999999999999996532 2222232222111 011
Q ss_pred c---eeeeeeec----cccchhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEec
Q 007511 356 T---LGIVRVEG----VLPAQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (601)
Q Consensus 356 T---~~~i~~~~----~l~~~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllLD 410 (601)
. .+++.-.+ .......++..+||.. ......+||+|||.||..|+.+ .|.+++||
T Consensus 469 ~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 469 DKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred chhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEec
Confidence 1 11111000 0111256788999985 6778899999999999999988 89999993
No 414
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.05 E-value=8.4e-10 Score=119.95 Aligned_cols=145 Identities=18% Similarity=0.189 Sum_probs=99.8
Q ss_pred eecCCccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCccccc----cceeEeeecCC--CCCceeee
Q 007511 288 KNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK----NIVSHLTEAPV--PGTTLGIV 360 (601)
Q Consensus 288 kg~G~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~----~~i~~v~qs~~--pgtT~~~i 360 (601)
.-.+...+.+++ ++.+..|. +.+.|+||+|||+|++.|.|+.+...|.+.... ..+-++||-|+ -||-++.+
T Consensus 443 tPt~g~~lie~L-s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQv 521 (659)
T KOG0060|consen 443 TPTNGDLLIENL-SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQV 521 (659)
T ss_pred CCCCCceeeeee-eeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhhee
Confidence 333455677778 88888885 666999999999999999999988888663222 34779999998 45447777
Q ss_pred eeecccc-----c-----hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEEEeccchHH-
Q 007511 361 RVEGVLP-----A-----QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTYRIKAGHSI- 415 (601)
Q Consensus 361 ~~~~~l~-----~-----~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~~~~- 415 (601)
.++..-. . ...+++..++.+ ...-.+.||+||+||+++||.+ +|+.-+||+..+.
T Consensus 522 IYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv 601 (659)
T KOG0060|consen 522 IYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAV 601 (659)
T ss_pred eccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhc
Confidence 7652110 0 123344443322 1233577999999999999999 9999999765543
Q ss_pred --HHHHHHHHHHHhcCceEE
Q 007511 416 --HIAGLMRMDVEESSVESI 433 (601)
Q Consensus 416 --~l~~lir~~~~~~g~tii 433 (601)
.+.+.+.....+.|.|.+
T Consensus 602 ~~dvE~~~Yr~~r~~giT~i 621 (659)
T KOG0060|consen 602 TEDVEGALYRKCREMGITFI 621 (659)
T ss_pred cHHHHHHHHHHHHHcCCeEE
Confidence 455555555556576544
No 415
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.05 E-value=1.1e-09 Score=105.25 Aligned_cols=170 Identities=18% Similarity=0.211 Sum_probs=108.0
Q ss_pred eEEEEEeEeecC-CccccchhhhhcccCC-cEEEECCCCCchhHHHHHHhccccCCCCCcccc------------cccee
Q 007511 280 KLHFVSAVKNWG-LKSLIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEE------------KNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G-~~~LL~~I~~l~~~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~------------~~~i~ 345 (601)
.|.+-+....|. ...++-++ ++..+.| ++.+||.|||||||||++|.|..-...|-+... .....
T Consensus 13 aievsgl~f~y~~~dP~~~Df-nldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~ 91 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDF-NLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLS 91 (291)
T ss_pred eEEEeccEEecccCCceEEEE-eeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCcee
Confidence 355555666664 35677777 7777777 567799999999999999999764433322100 01112
Q ss_pred EeeecCC--CCCceeeeeeeccc--------------cchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc-CC-CEE
Q 007511 346 HLTEAPV--PGTTLGIVRVEGVL--------------PAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL-KP-RTY 407 (601)
Q Consensus 346 ~v~qs~~--pgtT~~~i~~~~~l--------------~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL-~P-~ll 407 (601)
|+-.+.. ++... .+.+.+.+ .....+++.+.|.-.. ..+.+|.||++||.|+..| +| +++
T Consensus 92 YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~W-RmHkvSDGqrRRVQicMGLL~PfkVL 169 (291)
T KOG2355|consen 92 YLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRW-RMHKVSDGQRRRVQICMGLLKPFKVL 169 (291)
T ss_pred Eecccccccccccc-cccccccccHHHHHhhccCCChhHhhhhhhheeccceE-EEeeccccchhhhHHHHhcccceeEE
Confidence 2211110 11101 00000000 0124667766665432 3678999999999999998 87 566
Q ss_pred Ee-------ccchHHHHHHHHHHHHHhcCceEEEEEEe-------ecCEEEeecceecc
Q 007511 408 RI-------KAGHSIHIAGLMRMDVEESSVESIYVTVW-------ASPYLPLHMGKTEN 452 (601)
Q Consensus 408 lL-------D~~~~~~l~~lir~~~~~~g~tii~~~~~-------ad~vl~l~~Gki~~ 452 (601)
+| |.-.+..+..+++...++.|.|+++++.+ +++++.+..|++..
T Consensus 170 LLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 170 LLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred EeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 66 67778888999999998889999977654 45677888888744
No 416
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.97 E-value=4.6e-10 Score=120.42 Aligned_cols=139 Identities=15% Similarity=0.197 Sum_probs=94.6
Q ss_pred cccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc-cccccceeEeeecCC--CCCceeeeeeeccccc-
Q 007511 294 SLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD-GEEKNIVSHLTEAPV--PGTTLGIVRVEGVLPA- 368 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i-~~~~~~i~~v~qs~~--pgtT~~~i~~~~~l~~- 368 (601)
.+...+ ++.++.|. +.+.||||||||+|+++|.|+.+...|.. .....++-|+||-|+ -||-+|.+.++.....
T Consensus 496 vvv~~L-tf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~ 574 (728)
T KOG0064|consen 496 VLVPKL-TFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQM 574 (728)
T ss_pred eeecce-eEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHH
Confidence 355555 67777774 56699999999999999999998887754 233445889999988 3444777766532111
Q ss_pred ---------hhhhhccCCCcC----------cCCccCCCCHHHHHHhcccccc--CCCEEEeccch---HHHHHHHHHHH
Q 007511 369 ---------QAKLFDTPGLLH----------PNQITTRLTREEQKLVNINKEL--KPRTYRIKAGH---SIHIAGLMRMD 424 (601)
Q Consensus 369 ---------~~~llDtpGL~~----------~~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~~---~~~l~~lir~~ 424 (601)
-..+++.+.+.+ ....-+.|||||+||+.+||.+ +|+..+||.-. +..+.+-+.+.
T Consensus 575 ~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ 654 (728)
T KOG0064|consen 575 KRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQA 654 (728)
T ss_pred HhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHH
Confidence 123444443322 1223467999999999999999 99999986433 34566666666
Q ss_pred HHhcCceEE
Q 007511 425 VEESSVESI 433 (601)
Q Consensus 425 ~~~~g~tii 433 (601)
+...|.+.+
T Consensus 655 ak~~gi~ll 663 (728)
T KOG0064|consen 655 AKDAGISLL 663 (728)
T ss_pred HHhcCceEE
Confidence 666565544
No 417
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.96 E-value=1.5e-09 Score=110.32 Aligned_cols=159 Identities=19% Similarity=0.254 Sum_probs=98.2
Q ss_pred HHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHH
Q 007511 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (601)
Q Consensus 188 ~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~ 267 (601)
+++.+.+...|.|+.|-||+-+..|.++.+.+++.. ++-|+|+||+||++.... ..+.++++
T Consensus 38 r~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~-----------------k~riiVlNK~DLad~~~~-k~~iq~~~ 99 (335)
T KOG2485|consen 38 RAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPP-----------------KPRIIVLNKMDLADPKEQ-KKIIQYLE 99 (335)
T ss_pred HHHHhhcccccEEEEeeccccCCccccHHHHHhcCC-----------------CceEEEEecccccCchhh-hHHHHHHH
Confidence 556666778999999999999999999888887642 267899999999985322 23333333
Q ss_pred HHHHHcCCCccceEEEEEeEeecC--Cccccchhh-------hhcc---cCCcEEEECCCCCchhHHHHHHhccccCCCC
Q 007511 268 QRAREDGISKITKLHFVSAVKNWG--LKSLIDDVV-------DLAG---KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 268 ~~~~~~g~~~~~~V~lvSa~kg~G--~~~LL~~I~-------~l~~---~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
.. + .......+..+..+ ...++..+. .+.. ..-.+++||.+|+|||||||++....-
T Consensus 100 ~~----~---~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~L---- 168 (335)
T KOG2485|consen 100 WQ----N---LESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHL---- 168 (335)
T ss_pred hh----c---ccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHh----
Confidence 32 1 12233333333322 333333321 1111 112688899999999999998864331
Q ss_pred CccccccceeEeeecCCCCCceeeee-eeccccchhhhhccCCCcCc
Q 007511 336 GDGEEKNIVSHLTEAPVPGTTLGIVR-VEGVLPAQAKLFDTPGLLHP 381 (601)
Q Consensus 336 ~i~~~~~~i~~v~qs~~pgtT~~~i~-~~~~l~~~~~llDtpGL~~~ 381 (601)
+.. +.+.+.+.||.|...-. +...-.....++||||+..+
T Consensus 169 -----rk~-k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485|consen 169 -----RKK-KAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred -----hhc-cceeccCCCCceeeehhheEeccCCceEEecCCCcCCC
Confidence 111 34556677998854422 21122334789999999865
No 418
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.95 E-value=4.5e-10 Score=118.96 Aligned_cols=128 Identities=19% Similarity=0.239 Sum_probs=88.9
Q ss_pred cCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc----------cc-------------cce--eEeeec--CC----
Q 007511 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE----------EK-------------NIV--SHLTEA--PV---- 352 (601)
Q Consensus 305 ~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~----------~~-------------~~i--~~v~qs--~~---- 352 (601)
..|.|.. +|+||.||||-+++|+|.+.|.-|.... .+ ..+ .+-+|. ..
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 4566554 9999999999999999999998874210 00 000 000110 00
Q ss_pred CCCceeeeeeeccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHH
Q 007511 353 PGTTLGIVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMR 422 (601)
Q Consensus 353 pgtT~~~i~~~~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir 422 (601)
-|++.+.+.-....+...++++.++|.+ .++-+++|||||.||++||.++ +.++|++ |..+++.+..++|
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Ir 257 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIR 257 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHH
Confidence 2222222221111122368899999988 8889999999999999999998 8999998 8889999999999
Q ss_pred HHHHhcCceEE
Q 007511 423 MDVEESSVESI 433 (601)
Q Consensus 423 ~~~~~~g~tii 433 (601)
.+... +..++
T Consensus 258 el~~~-~k~Vi 267 (591)
T COG1245 258 ELAED-GKYVI 267 (591)
T ss_pred HHhcc-CCeEE
Confidence 98875 45555
No 419
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.95 E-value=3.6e-09 Score=107.51 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=86.9
Q ss_pred CcEEEECCCCCchhHHHHHHhccccCCCCCccc-----------c------ccceeEeeecCCCCC-c-eeeeee---ec
Q 007511 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGE-----------E------KNIVSHLTEAPVPGT-T-LGIVRV---EG 364 (601)
Q Consensus 307 G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~-----------~------~~~i~~v~qs~~pgt-T-~~~i~~---~~ 364 (601)
+-++++|+||+|||||+.+|.+...+..|.... . ...+...++...+.. + ...+.- ..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 456779999999999999999888654442210 0 112333333322111 1 110000 00
Q ss_pred cccc-------hhhhhccCCCcC-----------------------cCCccCCCCHHHHHHhcccccc--C----CCEEE
Q 007511 365 VLPA-------QAKLFDTPGLLH-----------------------PNQITTRLTREEQKLVNINKEL--K----PRTYR 408 (601)
Q Consensus 365 ~l~~-------~~~llDtpGL~~-----------------------~~~~~~~LSgGe~qrv~iaraL--~----P~lll 408 (601)
.+.+ ..++++..|+.. .++.+..||+||+||+++++++ . |++++
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 0111 135666677631 1233488999999999999998 3 88999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHM 447 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~ 447 (601)
+ |+.....+.++++....+ |.+++.++ .+||+++.+..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHHHhhCCeEEEEEe
Confidence 8 777888888988887654 56666443 57888887764
No 420
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.95 E-value=5.4e-10 Score=120.57 Aligned_cols=163 Identities=20% Similarity=0.194 Sum_probs=105.6
Q ss_pred ceEEEEEeEeecCCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCC--CC
Q 007511 279 TKLHFVSAVKNWGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVP--GT 355 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~p--gt 355 (601)
.+|.+.|.+..+....++++. .+.+.+|+= +++|+||+||||+|++|.|...|..-.+. +-.+.+...| .+
T Consensus 74 ~dvk~~sls~s~~g~~l~kd~-~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-----~y~ls~e~~ps~~~ 147 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGVELIKDV-TLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-----FYLLSREIEPSEKQ 147 (614)
T ss_pred ccceeeeeeeccCCceeeeee-eEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-----hhhhcccCCCchHH
Confidence 357888999999889999998 888888865 55999999999999999998876443210 0001111111 11
Q ss_pred ceeeeeeec----------------------------------ccc------chhhhhccCCCcC--cCCccCCCCHHHH
Q 007511 356 TLGIVRVEG----------------------------------VLP------AQAKLFDTPGLLH--PNQITTRLTREEQ 393 (601)
Q Consensus 356 T~~~i~~~~----------------------------------~l~------~~~~llDtpGL~~--~~~~~~~LSgGe~ 393 (601)
+...+.... .++ ....++--.|... .++.+..||||++
T Consensus 148 av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 148 AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence 111110000 000 0023444455554 5677899999999
Q ss_pred HHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeeccee
Q 007511 394 KLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKT 450 (601)
Q Consensus 394 qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki 450 (601)
.|+++||+| +|.+++| |...+..+.+.+...- ..+++ ++-.+|.+++.++.+++
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~~lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RIILVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---CceEEEEecchhhhhhHhhhhheecccce
Confidence 999999999 9999999 5566666666655432 11233 45568889988887774
No 421
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.93 E-value=1.1e-09 Score=117.67 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=124.9
Q ss_pred EEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------ccccceeEee
Q 007511 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIVSHLT 348 (601)
Q Consensus 284 vSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i~~v~ 348 (601)
.++....+ ...+++| ++.+..|+|+. .|-.|-|-+-|+.+|+|+.++..|.+. ..+..++|+|
T Consensus 263 L~v~~~~~-~~~v~~v-s~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VP 340 (501)
T COG3845 263 LSVKDRRG-VTAVKDV-SFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVP 340 (501)
T ss_pred eEeecCCC-Cceeeee-eeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCC
Confidence 33444333 3456778 99999998766 999999999999999999987778541 1234578898
Q ss_pred ecCC-----CCCc-eeeeeeecc----------ccc------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--
Q 007511 349 EAPV-----PGTT-LGIVRVEGV----------LPA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 349 qs~~-----pgtT-~~~i~~~~~----------l~~------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
.+.. +.++ .+|+.+... +.. ..++++.+++.. +...+..||||++|++.+||.|
T Consensus 341 edR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~ 420 (501)
T COG3845 341 EDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELAR 420 (501)
T ss_pred hhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhcc
Confidence 8774 5555 455433211 000 156888888875 6777899999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeecceec
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKTE 451 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki~ 451 (601)
+|+++++ |.+...++...+...... |..++ ++..+||++.+|++|++.
T Consensus 421 ~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 421 RPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred CCCEEEEcCCCccccHHHHHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhhheeeeeeCCcee
Confidence 9999998 999999999999888776 66666 345689999999999974
No 422
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.86 E-value=8.9e-09 Score=101.15 Aligned_cols=120 Identities=12% Similarity=0.108 Sum_probs=71.0
Q ss_pred hcccCCcEEEECCCCCchhHHHHHHhccccCCC-----CCc-------cccccceeEeeecCC-CCCceeeeeeeccccc
Q 007511 302 LAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGR-----GGD-------GEEKNIVSHLTEAPV-PGTTLGIVRVEGVLPA 368 (601)
Q Consensus 302 l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~-----G~i-------~~~~~~i~~v~qs~~-pgtT~~~i~~~~~l~~ 368 (601)
+.+..|-.+++|+||+||||||.+|........ |.. ......+...++... +. ..... .....
T Consensus 17 l~f~~gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~---~~~~~-~~~~~ 92 (198)
T cd03276 17 IEFGPRVNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA---NPLCV-LSQDM 92 (198)
T ss_pred EecCCCeEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC---CcCCH-HHHHH
Confidence 344556567899999999999999874332111 110 001112333333221 10 00000 00001
Q ss_pred hhhhhccCCCcCcCCccCCCCHHHHHHhcccccc------CCCEEEe-------ccchHHHHHHHHHHHHHh
Q 007511 369 QAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL------KPRTYRI-------KAGHSIHIAGLMRMDVEE 427 (601)
Q Consensus 369 ~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL------~P~lllL-------D~~~~~~l~~lir~~~~~ 427 (601)
..++++. -...++.+..||+||+||+++|+++ +|++++| |+.....+..+++....+
T Consensus 93 ~~~~l~~--~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~ 162 (198)
T cd03276 93 ARSFLTS--NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKK 162 (198)
T ss_pred HHHHhcc--ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhc
Confidence 1345555 1125678899999999999999876 8999999 777888888888776543
No 423
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.77 E-value=8.2e-09 Score=108.32 Aligned_cols=142 Identities=23% Similarity=0.316 Sum_probs=95.5
Q ss_pred ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccc--------cCCCCCccccccce-eEeeecCCCCCc----ee
Q 007511 293 KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSV--------DAGRGGDGEEKNIV-SHLTEAPVPGTT----LG 358 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~--------~~~~G~i~~~~~~i-~~v~qs~~pgtT----~~ 358 (601)
..+++++ ++.+..|++ +++|+||+||||||++|+|.. +|++|.+......+ +.++-+..|..+ .+
T Consensus 396 ryvlr~v-NL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 396 RYVLRNL-NLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeece-eeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 3467777 788888875 459999999999999999864 56677442221112 223322223333 12
Q ss_pred eeee-eccccchhhhhccCCCcC---cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHH
Q 007511 359 IVRV-EGVLPAQAKLFDTPGLLH---PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDV 425 (601)
Q Consensus 359 ~i~~-~~~l~~~~~llDtpGL~~---~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~ 425 (601)
.+.- .+.+....+++...|+.+ ..+..++||.||+.|+-||+++ .|.+++. |+.....+..-+..++
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela 554 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 1111 111112468899999987 4567899999999999999999 8888876 7777777777777777
Q ss_pred HhcCceEEEE
Q 007511 426 EESSVESIYV 435 (601)
Q Consensus 426 ~~~g~tii~~ 435 (601)
.+.|.|.+.+
T Consensus 555 Re~giTlivv 564 (593)
T COG2401 555 REAGITLIVV 564 (593)
T ss_pred HHhCCeEEEE
Confidence 7767766533
No 424
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.76 E-value=6e-09 Score=100.46 Aligned_cols=166 Identities=20% Similarity=0.207 Sum_probs=116.9
Q ss_pred EEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCC---------CCCc-------cc----ccc
Q 007511 284 VSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAG---------RGGD-------GE----EKN 342 (601)
Q Consensus 284 vSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~---------~G~i-------~~----~~~ 342 (601)
+......|.-.+.+.+ ++....|++-. ||.+|+|||-.-++|+|..+-. -+++ .+ ..+
T Consensus 11 IE~~TsqG~vK~VD~v-~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~ 89 (330)
T COG4170 11 IEFKTSQGWVKAVDRV-SMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGH 89 (330)
T ss_pred EEEecCCCceEeeeee-eeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhcc
Confidence 3445556666778888 88888898866 9999999999999999875321 1111 11 123
Q ss_pred ceeEeeecCC----C-------------CCceee-eeeecccc--chhhhhccCCCcC----cCCccCCCCHHHHHHhcc
Q 007511 343 IVSHLTEAPV----P-------------GTTLGI-VRVEGVLP--AQAKLFDTPGLLH----PNQITTRLTREEQKLVNI 398 (601)
Q Consensus 343 ~i~~v~qs~~----p-------------gtT~~~-i~~~~~l~--~~~~llDtpGL~~----~~~~~~~LSgGe~qrv~i 398 (601)
.++++||.+. | +.|... .+-.+.+. ...+++...|+.+ ...++.+|..||-|+|+|
T Consensus 90 ~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMI 169 (330)
T COG4170 90 NVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMI 169 (330)
T ss_pred chhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeee
Confidence 4678888774 2 222111 00000011 1257889999976 567899999999999999
Q ss_pred cccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEEEeeccee
Q 007511 399 NKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYLPLHMGKT 450 (601)
Q Consensus 399 araL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl~l~~Gki 450 (601)
|.|+ +|++++. ++.....+..++.......+.+++ .+..+||++-++..|+.
T Consensus 170 A~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 170 AIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQT 237 (330)
T ss_pred ehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEeccc
Confidence 9999 9999998 577778888888777666566665 24569999999998876
No 425
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.73 E-value=8.6e-09 Score=101.31 Aligned_cols=130 Identities=15% Similarity=0.185 Sum_probs=76.7
Q ss_pred hhcccCC-c-EEEECCCCCchhHHHHHHh-ccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCC
Q 007511 301 DLAGKRG-N-VWAIGAQNAGKSTLLNAIA-KSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPG 377 (601)
Q Consensus 301 ~l~~~~G-~-v~ivG~nGaGKSTLLn~L~-g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpG 377 (601)
++.+.+| + +.+.|+||+|||||+++|. ...-+..|. +++... ..+... + ..++...|
T Consensus 21 ~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~---------~vp~~~--~~~~~~------~---~~~~~~lg 80 (200)
T cd03280 21 DIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGL---------PIPAAE--GSSLPV------F---ENIFADIG 80 (200)
T ss_pred eEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCC---------Cccccc--cccCcC------c---cEEEEecC
Confidence 4455555 4 6669999999999999988 222122221 111110 000000 0 11222333
Q ss_pred CcC-cCCccCCCCHHHHHHhcccccc-CCCEEEe-------ccchHHHHH-HHHHHHHHhcCceEEEE------EEeecC
Q 007511 378 LLH-PNQITTRLTREEQKLVNINKEL-KPRTYRI-------KAGHSIHIA-GLMRMDVEESSVESIYV------TVWASP 441 (601)
Q Consensus 378 L~~-~~~~~~~LSgGe~qrv~iaraL-~P~lllL-------D~~~~~~l~-~lir~~~~~~g~tii~~------~~~ad~ 441 (601)
... .....+.+|+|++|++.+++++ +|+++++ |+.....+. .+++..... +.+++.+ ..++|+
T Consensus 81 ~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~-~~~vi~~tH~~~l~~~~d~ 159 (200)
T cd03280 81 DEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLER-GALVIATTHYGELKAYAYK 159 (200)
T ss_pred chhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEECCHHHHHHHHhc
Confidence 322 3455788999999999999888 8999999 566666664 456655443 5555532 245667
Q ss_pred EEEeecceec
Q 007511 442 YLPLHMGKTE 451 (601)
Q Consensus 442 vl~l~~Gki~ 451 (601)
++.+++|++.
T Consensus 160 ~~~l~~g~l~ 169 (200)
T cd03280 160 REGVENASME 169 (200)
T ss_pred CCCeEEEEEE
Confidence 7777776663
No 426
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.67 E-value=8.6e-09 Score=97.31 Aligned_cols=99 Identities=25% Similarity=0.291 Sum_probs=56.5
Q ss_pred HHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccc
Q 007511 264 HWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNI 343 (601)
Q Consensus 264 ~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~ 343 (601)
+|+.. +++.| .+|+.+|+..+.|...|.+.+ ....++++|++|||||||+|.|.+......|.+.....+
T Consensus 3 ~~~~~-y~~~g----y~v~~~S~~~~~g~~~l~~~l-----~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~r 72 (161)
T PF03193_consen 3 ELLEQ-YEKLG----YPVFFISAKTGEGIEELKELL-----KGKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGR 72 (161)
T ss_dssp HHHHH-HHHTT----SEEEE-BTTTTTTHHHHHHHH-----TTSEEEEECSTTSSHHHHHHHHHTSS----S--------
T ss_pred HHHHH-HHHcC----CcEEEEeCCCCcCHHHHHHHh-----cCCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCC
Confidence 34433 45666 579999999888888777776 223456699999999999999999876666654332222
Q ss_pred eeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCcC
Q 007511 344 VSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPN 382 (601)
Q Consensus 344 i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~~ 382 (601)
. -+||.....+ .+.....++||||+...+
T Consensus 73 G--------kHTTt~~~l~--~l~~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 73 G--------KHTTTHRELF--PLPDGGYIIDTPGFRSFG 101 (161)
T ss_dssp --------------SEEEE--EETTSEEEECSHHHHT--
T ss_pred C--------cccCCCeeEE--ecCCCcEEEECCCCCccc
Confidence 1 2244222222 234457899999998643
No 427
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.64 E-value=1.4e-07 Score=93.76 Aligned_cols=69 Identities=6% Similarity=0.009 Sum_probs=48.9
Q ss_pred cCCccCCCCHHHHHHhccccc------cCCCEEEe-------ccchHHHHHHHHHHHHHh-cCceEEEEE-------Eee
Q 007511 381 PNQITTRLTREEQKLVNINKE------LKPRTYRI-------KAGHSIHIAGLMRMDVEE-SSVESIYVT-------VWA 439 (601)
Q Consensus 381 ~~~~~~~LSgGe~qrv~iara------L~P~lllL-------D~~~~~~l~~lir~~~~~-~g~tii~~~-------~~a 439 (601)
.+..+..||+||+|++.++.+ .+|+++++ |+.....+..+++....+ ++.+++.++ .++
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~ 199 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYH 199 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCccc
Confidence 345678999999999887654 28999998 788888999999887655 334455333 344
Q ss_pred c--CEEEeecce
Q 007511 440 S--PYLPLHMGK 449 (601)
Q Consensus 440 d--~vl~l~~Gk 449 (601)
+ +++++++|+
T Consensus 200 ~~~~v~~l~~g~ 211 (213)
T cd03277 200 EKMTVLCVYNGP 211 (213)
T ss_pred CceEEEEEecCc
Confidence 4 566777765
No 428
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.64 E-value=3.9e-08 Score=90.91 Aligned_cols=124 Identities=25% Similarity=0.348 Sum_probs=88.2
Q ss_pred CCceeccccc-cccccCcccccccccC---CCCchhh-HHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhh
Q 007511 151 EKPVVCARCH-ALRHYGKVKDVTVENL---LPDFDFD-HTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTA 225 (601)
Q Consensus 151 ~~~~~C~RC~-~l~hy~~~~~~~~~~~---lP~~~~~-~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~ 225 (601)
.|+.+||+-. .-.+|.+.+.....+. .|.+.+. .++.+.+...+.++|+|++|.|+.+....+++.+.+.+.
T Consensus 13 GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f~--- 89 (143)
T PF10662_consen 13 GKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMFN--- 89 (143)
T ss_pred CHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhcccC---
Confidence 4566777733 3336766544332211 2666555 556777888888999999999999999999999877653
Q ss_pred hhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchh
Q 007511 226 EENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 226 ~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
+|+|-|+||+|+...+.+.++..+| ++..| +.+++.+|+..+.|.++|.+.+
T Consensus 90 ---------------~pvIGVITK~Dl~~~~~~i~~a~~~----L~~aG---~~~if~vS~~~~eGi~eL~~~L 141 (143)
T PF10662_consen 90 ---------------KPVIGVITKIDLPSDDANIERAKKW----LKNAG---VKEIFEVSAVTGEGIEELKDYL 141 (143)
T ss_pred ---------------CCEEEEEECccCccchhhHHHHHHH----HHHcC---CCCeEEEECCCCcCHHHHHHHH
Confidence 2899999999998433233344444 55556 4678999999999999888766
No 429
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=7.3e-08 Score=113.91 Aligned_cols=157 Identities=21% Similarity=0.209 Sum_probs=115.6
Q ss_pred ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCC---CCc---------cccccceeEeeecCC--CCCc-
Q 007511 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGR---GGD---------GEEKNIVSHLTEAPV--PGTT- 356 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~---G~i---------~~~~~~i~~v~qs~~--pgtT- 356 (601)
..+++++ +..+++|+..+ +|++|+|||||+++|+|...-.. |.+ -..++.++|..|... |.+|
T Consensus 128 ~~il~~~-sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 128 IQILKDI-SGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred ceeecCc-ceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 3577887 66677787655 99999999999999999764321 211 112456788888876 8888
Q ss_pred eeeeeeeccccc-----------------hhhhhccCCCcC------cCCccCCCCHHHHHHhcccccc--CCCEEEe--
Q 007511 357 LGIVRVEGVLPA-----------------QAKLFDTPGLLH------PNQITTRLTREEQKLVNINKEL--KPRTYRI-- 409 (601)
Q Consensus 357 ~~~i~~~~~l~~-----------------~~~llDtpGL~~------~~~~~~~LSgGe~qrv~iaraL--~P~lllL-- 409 (601)
++.+.+.++..+ ...++.++|+.. .+....-+|||||+||.++.++ .++++.+
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 666655332111 136788999976 5667788999999999999999 7777777
Q ss_pred -----ccchHHHHHHHHHHHHHhcCceEE--------EEEEeecCEEEeeccee
Q 007511 410 -----KAGHSIHIAGLMRMDVEESSVESI--------YVTVWASPYLPLHMGKT 450 (601)
Q Consensus 410 -----D~~~~~~l~~lir~~~~~~g~tii--------~~~~~ad~vl~l~~Gki 450 (601)
|...+..+...++..+...+.|.+ ......|.+++|.+|++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~ 340 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQ 340 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccce
Confidence 788889999999988776555554 23356789999999886
No 430
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.60 E-value=1.1e-07 Score=89.57 Aligned_cols=110 Identities=26% Similarity=0.225 Sum_probs=66.4
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccc-cchhhhhccCCCcCcCCccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHPNQITT 386 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l-~~~~~llDtpGL~~~~~~~~ 386 (601)
+|+++|.+|||||||||+|+|.. ...+.+||+|.+...-...+ .....++|+||+... +
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~----------------~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl----~ 61 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK----------------QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSL----S 61 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----------------EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSS----S
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccC----C
Confidence 47889999999999999999854 22456799997654432222 234789999999653 3
Q ss_pred CCCHHHHHHhcccccc--CCCEEEe--ccchHHHHHHHHHHHHHhcCceEEEEEEeec
Q 007511 387 RLTREEQKLVNINKEL--KPRTYRI--KAGHSIHIAGLMRMDVEESSVESIYVTVWAS 440 (601)
Q Consensus 387 ~LSgGe~qrv~iaraL--~P~lllL--D~~~~~~l~~lir~~~~~~g~tii~~~~~ad 440 (601)
..|..| +++....+ +|+++++ |..+-..=..+..++... |..++.+...+|
T Consensus 62 ~~s~ee--~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e~-g~P~vvvlN~~D 116 (156)
T PF02421_consen 62 SKSEEE--RVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLEL-GIPVVVVLNKMD 116 (156)
T ss_dssp SSSHHH--HHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHHT-TSSEEEEEETHH
T ss_pred CCCcHH--HHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHHc-CCCEEEEEeCHH
Confidence 356666 33322222 7887765 777655555555555544 555555544444
No 431
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.59 E-value=9e-08 Score=118.20 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=61.9
Q ss_pred hhhccCCCcC--cCCccCCCCHHHHHHhcccccc-----CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 371 KLFDTPGLLH--PNQITTRLTREEQKLVNINKEL-----KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 371 ~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL-----~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
++++.+|+.. .++.+..||+||+||+.||++| +|++++| |+.....+..+++.+..+ |.+++.++
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVIiIs 869 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVIIE 869 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 4567788875 5888999999999999999999 6999999 788888999999887765 66776332
Q ss_pred ------EeecCEEEee
Q 007511 437 ------VWASPYLPLH 446 (601)
Q Consensus 437 ------~~ad~vl~l~ 446 (601)
.+||+++.|.
T Consensus 870 Hdl~~i~~aDrVi~L~ 885 (1809)
T PRK00635 870 HNMHVVKVADYVLELG 885 (1809)
T ss_pred CCHHHHHhCCEEEEEc
Confidence 5889999995
No 432
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=5.3e-08 Score=104.95 Aligned_cols=172 Identities=14% Similarity=0.169 Sum_probs=112.2
Q ss_pred eEEEEEeEeecCCcc--ccchhhhhcccC-CcEEEECCCCCchhHHHHHHhccccCCCCCc-cccccceeEeeecCCCCC
Q 007511 280 KLHFVSAVKNWGLKS--LIDDVVDLAGKR-GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGD-GEEKNIVSHLTEAPVPGT 355 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~--LL~~I~~l~~~~-G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i-~~~~~~i~~v~qs~~pgt 355 (601)
.+.+..+...|...+ ++..+ .+...- .++..||+||+||||+++++.+...|.+|-+ ...+.++++.+|......
T Consensus 362 ~l~i~~V~f~y~p~~y~~~~~~-~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l 440 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEYQWRKQL-GLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFL 440 (582)
T ss_pred eeEEEeeeccCCCcchhhhhcc-CCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHH
Confidence 455556666666544 55555 332222 2688899999999999999999999888854 345567888877654221
Q ss_pred c--eeeeeeecc-ccc-----hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEec-cch---HHHHHH
Q 007511 356 T--LGIVRVEGV-LPA-----QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRIK-AGH---SIHIAG 419 (601)
Q Consensus 356 T--~~~i~~~~~-l~~-----~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllLD-~~~---~~~l~~ 419 (601)
. ...+.+... ..+ ...-+..+||.. ..+.+..|||||+-||++|... +|-+|+|| |.+ ...++.
T Consensus 441 ~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~A 520 (582)
T KOG0062|consen 441 DKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGA 520 (582)
T ss_pred HHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHH
Confidence 1 111111000 111 134577788876 4445788999999999999876 99999994 333 345566
Q ss_pred HHHHHHH-hcCceEE-----EEEEeecCEEEeecceecc
Q 007511 420 LMRMDVE-ESSVESI-----YVTVWASPYLPLHMGKTEN 452 (601)
Q Consensus 420 lir~~~~-~~g~tii-----~~~~~ad~vl~l~~Gki~~ 452 (601)
|.+-+.. ++|..++ ++...|..+++..+|++..
T Consensus 521 L~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 521 LAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 6665544 3343333 4566889999999998754
No 433
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.55 E-value=4.1e-08 Score=103.52 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=86.8
Q ss_pred EEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCc---eeeeeeec---cccc--hhhhhccCCCcC
Q 007511 309 VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT---LGIVRVEG---VLPA--QAKLFDTPGLLH 380 (601)
Q Consensus 309 v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT---~~~i~~~~---~l~~--~~~llDtpGL~~ 380 (601)
+.++|.||.||||||++++|.+.|+.|+-- ..-.++|-+|...|..+ +..+.-.. ..+. ...++.-+.+.+
T Consensus 370 ivmlgEngtgkTTfi~mlag~~~pd~~~e~-p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~ 448 (592)
T KOG0063|consen 370 IVMLGENGTGKTTFIRMLAGRLKPDEGGEI-PVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIEN 448 (592)
T ss_pred EEEEccCCcchhHHHHHHhcCCCCCccCcc-cccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHH
Confidence 344999999999999999999999888421 11134444554443222 11111000 0000 123444444444
Q ss_pred -cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEE-------EEEEeecCEE
Q 007511 381 -PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESI-------YVTVWASPYL 443 (601)
Q Consensus 381 -~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii-------~~~~~ad~vl 443 (601)
.++-+..|||||+||++++..| .+++|++ |..+++.....++......+.|-. -.+..||+++
T Consensus 449 i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvi 528 (592)
T KOG0063|consen 449 IIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVI 528 (592)
T ss_pred HHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeE
Confidence 5677889999999999999999 5578877 777787777777776554333322 2345788888
Q ss_pred Eeec
Q 007511 444 PLHM 447 (601)
Q Consensus 444 ~l~~ 447 (601)
++..
T Consensus 529 vf~G 532 (592)
T KOG0063|consen 529 VFEG 532 (592)
T ss_pred EEec
Confidence 7753
No 434
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.53 E-value=2.6e-07 Score=89.28 Aligned_cols=127 Identities=13% Similarity=0.158 Sum_probs=71.3
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccc--cceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCcCCcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEK--NIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQIT 385 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~--~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~~~ 385 (601)
-.+++|+||+|||++|.+|.-... |.....+ ...-.......++.+...+.+.+.. . + -+.......
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~--~--~----~~~~~~~~~ 92 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG---GKAAKLRRGSLLFLAGGGVKAGINSASVEITFDK--S--Y----FLVLQGKVE 92 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC---cccccccCcchhhhcccccCCCCceEEEEEEEEC--c--e----EEecCCcCc
Confidence 456799999999999999864331 1100000 0000001111133333333332111 1 0 011111222
Q ss_pred CCCCHHHHHHhcccccc------CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEee
Q 007511 386 TRLTREEQKLVNINKEL------KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLH 446 (601)
Q Consensus 386 ~~LSgGe~qrv~iaraL------~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~ 446 (601)
.-||+||+||+++++++ +|+++++ |+.....+..+++..... +.+++.++ ..+|+++.+.
T Consensus 93 ~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~~adrvi~i~ 171 (178)
T cd03239 93 QILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMFENADKLIGVL 171 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHhhCCeEEEEE
Confidence 23999999999999976 6899998 777788888888877654 55665322 3566666664
No 435
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.52 E-value=2e-07 Score=110.08 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=62.4
Q ss_pred hhhccCCCcC--cCCccCCCCHHHHHHhcccccc-C----CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 371 KLFDTPGLLH--PNQITTRLTREEQKLVNINKEL-K----PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 371 ~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL-~----P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
.+++.+||.. .++.+..||+||+||+.+|++| . |++|+| |+.....+..+++.+..+ |.+++.++
T Consensus 810 ~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVIvi~ 888 (924)
T TIGR00630 810 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVVVIE 888 (924)
T ss_pred HHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Confidence 3456678764 5788999999999999999999 3 789998 788888999999887755 66666322
Q ss_pred ------EeecCEEEe------ecceec
Q 007511 437 ------VWASPYLPL------HMGKTE 451 (601)
Q Consensus 437 ------~~ad~vl~l------~~Gki~ 451 (601)
..||+++.| +.|++.
T Consensus 889 H~~~~i~~aD~ii~Lgp~~G~~gG~iv 915 (924)
T TIGR00630 889 HNLDVIKTADYIIDLGPEGGDGGGTIV 915 (924)
T ss_pred CCHHHHHhCCEEEEecCCccCCCCEEE
Confidence 368899988 567663
No 436
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.51 E-value=2.9e-07 Score=108.90 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=63.7
Q ss_pred hhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CC---CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 371 KLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KP---RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 371 ~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P---~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
++++.+||.. .++.+..|||||+||+.+|++| +| ++|+| |+.....+..+++.+..+ |.+++.++
T Consensus 812 ~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G~TVIiit 890 (943)
T PRK00349 812 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-GNTVVVIE 890 (943)
T ss_pred HHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Confidence 4566678864 5788999999999999999999 77 88888 788888999999887655 66776332
Q ss_pred ------EeecCEEEe------ecceec
Q 007511 437 ------VWASPYLPL------HMGKTE 451 (601)
Q Consensus 437 ------~~ad~vl~l------~~Gki~ 451 (601)
..||+++.| +.|++.
T Consensus 891 H~~~~i~~aD~ii~Lgp~~G~~~G~Iv 917 (943)
T PRK00349 891 HNLDVIKTADWIIDLGPEGGDGGGEIV 917 (943)
T ss_pred cCHHHHHhCCEEEEecCCcCCCCCEEE
Confidence 368999999 677763
No 437
>COG1159 Era GTPase [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=89.34 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=78.7
Q ss_pred CCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCC
Q 007511 178 PDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL 257 (601)
Q Consensus 178 P~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~ 257 (601)
|...+.+.|++.+.+++.++|+|++|||+.+..+..+..+.+.+... +.|+++++||+|....+.
T Consensus 67 pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~---------------~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 67 PKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT---------------KTPVILVVNKIDKVKPKT 131 (298)
T ss_pred cchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhc---------------CCCeEEEEEccccCCcHH
Confidence 77889999999999999999999999999998888787777766531 138999999999997532
Q ss_pred ChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhh
Q 007511 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 258 ~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
.+....... .... .+.+++.+||.++.+...+++.+..+
T Consensus 132 ---~l~~~~~~~-~~~~--~f~~ivpiSA~~g~n~~~L~~~i~~~ 170 (298)
T COG1159 132 ---VLLKLIAFL-KKLL--PFKEIVPISALKGDNVDTLLEIIKEY 170 (298)
T ss_pred ---HHHHHHHHH-HhhC--CcceEEEeeccccCCHHHHHHHHHHh
Confidence 133333222 2222 46789999999988887777777433
No 438
>COG1159 Era GTPase [General function prediction only]
Probab=98.17 E-value=8.9e-07 Score=90.33 Aligned_cols=62 Identities=42% Similarity=0.508 Sum_probs=45.4
Q ss_pred CCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcCcC
Q 007511 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHPN 382 (601)
Q Consensus 306 ~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~~~ 382 (601)
.|.|++||.+|||||||+|.|+|.- ++ -.|+-|.||+..+.-..... ...-++||||+..+.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~K-------------is--IvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQK-------------IS--IVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCc-------------eE--eecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 4678899999999999999999742 33 45777999977665432222 235679999998753
No 439
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.15 E-value=2.6e-06 Score=80.95 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=65.8
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecC-CCCCceeeeeeeccccchhhhhccCCCcCcCCccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP-VPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITT 386 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~-~pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~~~~ 386 (601)
.+.++|+||+||||+++++....-...+.... .+. ..+......... + +. ...
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~---------~~~~~~g~~~~~~~~~--~-----------i~----~~~ 76 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRR---------RSGVKAGCIVAAVSAE--L-----------IF----TRL 76 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhc---------cCcccCCCcceeeEEE--E-----------eh----hee
Confidence 56679999999999999977554332221110 000 011111111110 0 10 112
Q ss_pred CCCHHHHHHhcccccc------CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEee
Q 007511 387 RLTREEQKLVNINKEL------KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLH 446 (601)
Q Consensus 387 ~LSgGe~qrv~iaraL------~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~ 446 (601)
.||+||+|++.++++| +|+++++ |+.....+...+.....+ +.+++.++ ..+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHhhhhEEEEE
Confidence 3999999999999998 4688888 677777888877776555 55555332 2345555443
No 440
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.06 E-value=4.1e-06 Score=90.25 Aligned_cols=60 Identities=32% Similarity=0.422 Sum_probs=48.4
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccch-hhhhccCCCcCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQ-AKLFDTPGLLHPN 382 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~-~~llDtpGL~~~~ 382 (601)
.++++|++|||||||||+|++... +. ++..||||+|.+.....+.+. ..++||.||...+
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~-------------AI--VTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~ 279 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDR-------------AI--VTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD 279 (454)
T ss_pred eEEEECCCCCcHHHHHHHHhcCCc-------------eE--ecCCCCCccceEEEEEEECCEEEEEEecCCcccCc
Confidence 688899999999999999998652 23 456799999998876666553 6899999998643
No 441
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.03 E-value=3.3e-06 Score=83.09 Aligned_cols=103 Identities=18% Similarity=0.190 Sum_probs=55.8
Q ss_pred cEEEECCCCCchhHHHHHHhccc-cCCCCCccccccceeEeeecCCCCCc-eeeeeeeccccchhhhhccCCCcC-cCCc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV-DAGRGGDGEEKNIVSHLTEAPVPGTT-LGIVRVEGVLPAQAKLFDTPGLLH-PNQI 384 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~-~~~~G~i~~~~~~i~~v~qs~~pgtT-~~~i~~~~~l~~~~~llDtpGL~~-~~~~ 384 (601)
.++++|+||+|||||+++|++.. ....|. +++.... ... .+. ++...+... ....
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~~~~~~~~g~---------~~~~~~~-~i~~~dq------------i~~~~~~~d~i~~~ 88 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGLAVLLAQIGC---------FVPAESA-SIPLVDR------------IFTRIGAEDSISDG 88 (202)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHHcCC---------Ccccccc-ccCCcCE------------EEEEecCcccccCC
Confidence 46669999999999999999533 222231 2211110 000 111 111112111 2334
Q ss_pred cCCCCHHHHHHhcccccc-CCCEEEe-------ccchHHHHH-HHHHHHHHhcCceEE
Q 007511 385 TTRLTREEQKLVNINKEL-KPRTYRI-------KAGHSIHIA-GLMRMDVEESSVESI 433 (601)
Q Consensus 385 ~~~LSgGe~qrv~iaraL-~P~lllL-------D~~~~~~l~-~lir~~~~~~g~tii 433 (601)
.+.++.+++|...+...+ +|+++++ |+.....+. .+++..... +.+++
T Consensus 89 ~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~-~~~vi 145 (202)
T cd03243 89 RSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEK-GCRTL 145 (202)
T ss_pred ceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-CCeEE
Confidence 566788888877776655 8999999 444555443 445544433 54544
No 442
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.03 E-value=3.8e-06 Score=74.74 Aligned_cols=58 Identities=36% Similarity=0.383 Sum_probs=37.7
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~ 380 (601)
+|+++|.+|||||||+|+|++... ...+..+++|.........+. ....++|+||+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~---------------~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~ 59 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKL---------------AKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGIND 59 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTS---------------SEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSS
T ss_pred CEEEECCCCCCHHHHHHHHhcccc---------------ccccccccceeeeeeeeeeeceeeEEEEeCCCCcc
Confidence 478899999999999999997421 113344667744422111122 2246999999975
No 443
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.00 E-value=9.4e-06 Score=83.50 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=27.0
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i 337 (601)
.+.++|+||+|||||+++|+|...+..|.+
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~~~G~i 142 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILSTGISQL 142 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCCCCceE
Confidence 467799999999999999999999988854
No 444
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.99 E-value=1.9e-05 Score=85.07 Aligned_cols=94 Identities=24% Similarity=0.425 Sum_probs=72.6
Q ss_pred hhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHH
Q 007511 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (601)
Q Consensus 191 ~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~ 270 (601)
..++..+++|++|+||.+.....+.++..++... |+ ++++|+||+|++.++ .....++.++.-
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~----------g~-----~~vIvvNKWDl~~~~--~~~~~~~k~~i~ 317 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA----------GR-----GIVIVVNKWDLVEED--EATMEEFKKKLR 317 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc----------CC-----CeEEEEEccccCCch--hhHHHHHHHHHH
Confidence 3566789999999999999988888888877642 32 799999999999752 234555555444
Q ss_pred HHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+......+..++++||.++++...+++.+..
T Consensus 318 ~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~ 348 (444)
T COG1160 318 RKLPFLDFAPIVFISALTGQGLDKLFEAIKE 348 (444)
T ss_pred HHhccccCCeEEEEEecCCCChHHHHHHHHH
Confidence 4445456789999999999999999998843
No 445
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.98 E-value=2e-05 Score=81.09 Aligned_cols=60 Identities=32% Similarity=0.347 Sum_probs=41.2
Q ss_pred CcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccc-cchhhhhccCCCcCc
Q 007511 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHP 381 (601)
Q Consensus 307 G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l-~~~~~llDtpGL~~~ 381 (601)
|.|+++|.+|||||||+|+|+|.. ....++.|+||++.+.-.... .....++||||+...
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~---------------~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQK---------------ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc---------------EeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 568899999999999999999742 223456688886654321111 122567999999753
No 446
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=1.2e-06 Score=92.62 Aligned_cols=81 Identities=11% Similarity=0.238 Sum_probs=55.7
Q ss_pred hhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCCEEEe-ccchHHHHHHHHHHHH-Hhc-CceEE-------EE
Q 007511 370 AKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPRTYRI-KAGHSIHIAGLMRMDV-EES-SVESI-------YV 435 (601)
Q Consensus 370 ~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~lllL-D~~~~~~l~~lir~~~-~~~-g~tii-------~~ 435 (601)
..++.-+|+.. .+++...+|||.+-||.+|||| .|.+++| .|.+.+.+-.+|+.+. .++ ..|.+ ++
T Consensus 393 RRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFL 472 (807)
T KOG0066|consen 393 RRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFL 472 (807)
T ss_pred HHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchH
Confidence 46777888876 6788999999999999999999 9999988 3555555555554432 121 12233 34
Q ss_pred EEeecCEEEeeccee
Q 007511 436 TVWASPYLPLHMGKT 450 (601)
Q Consensus 436 ~~~ad~vl~l~~Gki 450 (601)
...|..++-+.+.++
T Consensus 473 D~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 473 DSVCTDIIHLDNQKL 487 (807)
T ss_pred HHHHHHHhhhhhhhh
Confidence 457777777776655
No 447
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.94 E-value=7.1e-05 Score=77.39 Aligned_cols=62 Identities=10% Similarity=0.005 Sum_probs=46.5
Q ss_pred CCCCHHHHHHhccccc--c----CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEee
Q 007511 386 TRLTREEQKLVNINKE--L----KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLH 446 (601)
Q Consensus 386 ~~LSgGe~qrv~iara--L----~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~ 446 (601)
..||+||+||+++|++ + +|+++++ |+.....+..+++.... +.+++.++ .+||+++.+.
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHHHhcCcEEEEE
Confidence 4599999999999974 3 8899998 77777888888876643 45565333 4788888887
Q ss_pred cce
Q 007511 447 MGK 449 (601)
Q Consensus 447 ~Gk 449 (601)
++.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
No 448
>PRK09866 hypothetical protein; Provisional
Probab=97.93 E-value=3.4e-05 Score=86.48 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=68.3
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-CChhHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRA 270 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-~~~~~l~~w~~~~~ 270 (601)
.++.++|+|++|||+....+..+..+.+.+.+. ++ + .|+++|+||+|+.... ...+.+..++...+
T Consensus 254 eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~----------~K--~-~PVILVVNKIDl~dreeddkE~Lle~V~~~L 320 (741)
T PRK09866 254 QQLARASAVLAVLDYTQLKSISDEEVREAILAV----------GQ--S-VPLYVLVNKFDQQDRNSDDADQVRALISGTL 320 (741)
T ss_pred HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc----------CC--C-CCEEEEEEcccCCCcccchHHHHHHHHHHHH
Confidence 356789999999999987666666676666532 11 1 2799999999997432 12355666665544
Q ss_pred HHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
...+. .+.+|+.+|+.+++|.+.+++.|..
T Consensus 321 ~q~~i-~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 321 MKGCI-TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HhcCC-CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 33332 4678999999999999999988843
No 449
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.92 E-value=1.4e-05 Score=99.29 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=55.6
Q ss_pred hhhccCCCcC--cCCccCCCCHHHHHHhcccccc-C----CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 371 KLFDTPGLLH--PNQITTRLTREEQKLVNINKEL-K----PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 371 ~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL-~----P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
+++...||.. ..|....|||||.||+-+|+.| + +.+|+| ++.....+.++++.+... |.|++.+.
T Consensus 1681 ~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~-g~tvivie 1759 (1809)
T PRK00635 1681 QALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVIYID 1759 (1809)
T ss_pred HHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEe
Confidence 4566678865 7899999999999999999999 3 468888 566677788888887766 66766332
Q ss_pred ------EeecCEEEe
Q 007511 437 ------VWASPYLPL 445 (601)
Q Consensus 437 ------~~ad~vl~l 445 (601)
..||.++-|
T Consensus 1760 H~~~~i~~aD~iidl 1774 (1809)
T PRK00635 1760 HDPALLKQADYLIEM 1774 (1809)
T ss_pred CCHHHHHhCCEEEEc
Confidence 346666655
No 450
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.90 E-value=1e-05 Score=78.38 Aligned_cols=57 Identities=30% Similarity=0.390 Sum_probs=43.2
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~ 380 (601)
+|+++|.||||||||||+|+|.- ..+.+|..||.|.....+. ..+...+.|.||.--
T Consensus 26 EIaF~GRSNVGKSSlIN~l~~~k--------------~LArtSktPGrTq~iNff~--~~~~~~lVDlPGYGy 82 (200)
T COG0218 26 EIAFAGRSNVGKSSLINALTNQK--------------NLARTSKTPGRTQLINFFE--VDDELRLVDLPGYGY 82 (200)
T ss_pred EEEEEccCcccHHHHHHHHhCCc--------------ceeecCCCCCccceeEEEE--ecCcEEEEeCCCccc
Confidence 79999999999999999999743 2455677799995544442 334467899999864
No 451
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.86 E-value=7.8e-05 Score=84.84 Aligned_cols=72 Identities=22% Similarity=0.157 Sum_probs=50.1
Q ss_pred hccCCCcC--cCCccCCCCHHHHHHhcccccc-----CCCEEEec-------cchHHHHHHHHHHHHHhcCceEE-----
Q 007511 373 FDTPGLLH--PNQITTRLTREEQKLVNINKEL-----KPRTYRIK-------AGHSIHIAGLMRMDVEESSVESI----- 433 (601)
Q Consensus 373 lDtpGL~~--~~~~~~~LSgGe~qrv~iaraL-----~P~lllLD-------~~~~~~l~~lir~~~~~~g~tii----- 433 (601)
+-.+||.. ..|....|||||.|||-+|..| ...+|+|| ......+..++..+... |.|++
T Consensus 806 L~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~-GnTViVIEHN 884 (935)
T COG0178 806 LVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIVIEHN 884 (935)
T ss_pred HHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecc
Confidence 33457754 7889999999999999999999 23688884 23344555566666665 66766
Q ss_pred -EEEEeecCEEEe
Q 007511 434 -YVTVWASPYLPL 445 (601)
Q Consensus 434 -~~~~~ad~vl~l 445 (601)
.+...||.++-|
T Consensus 885 LdVIk~AD~IIDL 897 (935)
T COG0178 885 LDVIKTADWIIDL 897 (935)
T ss_pred cceEeecCEEEEc
Confidence 345566766655
No 452
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.84 E-value=2.9e-05 Score=83.83 Aligned_cols=100 Identities=26% Similarity=0.360 Sum_probs=66.1
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccch-hhhhccCCCcC-cCCcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQ-AKLFDTPGLLH-PNQIT 385 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~-~~llDtpGL~~-~~~~~ 385 (601)
.++++|++|+|||||+|+|+... ..-.++.||||+|.+.......+. ..+.||.|+.. .+..+
T Consensus 270 ~iaIvGrPNvGKSSLlNaL~~~d---------------rsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~i 334 (531)
T KOG1191|consen 270 QIAIVGRPNVGKSSLLNALSRED---------------RSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGI 334 (531)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC---------------ceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChh
Confidence 78899999999999999999643 234678899999988776554443 67899999987 55555
Q ss_pred CCCCHHHHHHhcccccc-CCCEEEe--cc--chHHHHHHHHHHHHHh
Q 007511 386 TRLTREEQKLVNINKEL-KPRTYRI--KA--GHSIHIAGLMRMDVEE 427 (601)
Q Consensus 386 ~~LSgGe~qrv~iaraL-~P~lllL--D~--~~~~~l~~lir~~~~~ 427 (601)
..++-..-+ +++ +.+++++ |+ .....-..+.+.+...
T Consensus 335 E~~gI~rA~-----k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~ 376 (531)
T KOG1191|consen 335 EALGIERAR-----KRIERADVILLVVDAEESDTESDLKIARILETE 376 (531)
T ss_pred HHHhHHHHH-----HHHhhcCEEEEEecccccccccchHHHHHHHHh
Confidence 555443322 123 6676665 65 2333333444444433
No 453
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.81 E-value=9.3e-05 Score=76.22 Aligned_cols=98 Identities=18% Similarity=0.183 Sum_probs=64.5
Q ss_pred hhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH
Q 007511 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (601)
Q Consensus 182 ~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~ 261 (601)
+.+.|.+.+..++..+|+|++|+|+.+.... ...+...+.. . + .|+++|+||+|+..+ ..
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~----------~----~-~p~ilV~NK~Dl~~~----~~ 124 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGD-GEFVLTKLQN----------L----K-RPVVLTRNKLDNKFK----DK 124 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCch-HHHHHHHHHh----------c----C-CCEEEEEECeeCCCH----HH
Confidence 4445556666777889999999999986432 2334343321 1 1 379999999999743 23
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhh
Q 007511 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 262 l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
+..+...+.... .+..++.+||..+.|.+.+++.+...
T Consensus 125 ~~~~~~~~~~~~---~~~~v~~iSA~~g~gi~~L~~~l~~~ 162 (270)
T TIGR00436 125 LLPLIDKYAILE---DFKDIVPISALTGDNTSFLAAFIEVH 162 (270)
T ss_pred HHHHHHHHHhhc---CCCceEEEecCCCCCHHHHHHHHHHh
Confidence 333333333222 24578999999999999888887443
No 454
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.80 E-value=3e-05 Score=75.20 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=61.8
Q ss_pred HhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHH
Q 007511 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (601)
Q Consensus 190 l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~ 269 (601)
....+..+|.+++|||+.+..........+++... +. |+++|+||+|++..+ -...+.++...+
T Consensus 87 ~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~--------------~~-p~ivvlNK~D~~~~~-~~~~~~~~~~~l 150 (188)
T PF00009_consen 87 MIRGLRQADIAILVVDANDGIQPQTEEHLKILREL--------------GI-PIIVVLNKMDLIEKE-LEEIIEEIKEKL 150 (188)
T ss_dssp HHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT--------------T--SEEEEEETCTSSHHH-HHHHHHHHHHHH
T ss_pred ccceecccccceeeeeccccccccccccccccccc--------------cc-ceEEeeeeccchhhh-HHHHHHHHHHHh
Confidence 33456679999999999988665555555544321 22 699999999998321 011223333344
Q ss_pred HHHcCCCc--cceEEEEEeEeecCCccccchhhh
Q 007511 270 AREDGISK--ITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 270 ~~~~g~~~--~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
++..+... ...++++|+.+++|...|++.+..
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~ 184 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVE 184 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHH
Confidence 45544321 356899999999999888877743
No 455
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.79 E-value=2.5e-05 Score=80.74 Aligned_cols=86 Identities=24% Similarity=0.260 Sum_probs=55.3
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcCcCCccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLHPNQITT 386 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~~~~~~~ 386 (601)
.+.+.|.+|||||||+++|++-. .-..++|.||.+...-.+..+. ..+++|||||.+ +...
T Consensus 170 TivVaG~PNVGKSSlv~~lT~Ak----------------pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLD--RPl~ 231 (346)
T COG1084 170 TIVVAGYPNVGKSSLVRKLTTAK----------------PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLD--RPLE 231 (346)
T ss_pred eEEEecCCCCcHHHHHHHHhcCC----------------CccCCCCccccceeEeeeecCCceEEEecCCcccC--CChH
Confidence 57779999999999999999743 1234568888554322212222 468999999964 4555
Q ss_pred CCCHHHHHHhcccccc-CCCEEEecc
Q 007511 387 RLTREEQKLVNINKEL-KPRTYRIKA 411 (601)
Q Consensus 387 ~LSgGe~qrv~iaraL-~P~lllLD~ 411 (601)
+...=|+|-+.-.+-| .--++++|+
T Consensus 232 ErN~IE~qAi~AL~hl~~~IlF~~D~ 257 (346)
T COG1084 232 ERNEIERQAILALRHLAGVILFLFDP 257 (346)
T ss_pred HhcHHHHHHHHHHHHhcCeEEEEEcC
Confidence 5556677766544555 444445554
No 456
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.79 E-value=7.7e-05 Score=68.34 Aligned_cols=82 Identities=27% Similarity=0.406 Sum_probs=55.0
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
....+|++++|+|+.+........+.+.+ . .|+++|+||+||.+.....+...+|.+ .
T Consensus 59 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~-----------------~-~p~ilv~NK~Dl~~~~~~~~~~~~~~~----~ 116 (142)
T TIGR02528 59 TAADADVIALVQSATDPESRFPPGFASIF-----------------V-KPVIGLVTKIDLAEADVDIERAKELLE----T 116 (142)
T ss_pred HhhcCCEEEEEecCCCCCcCCChhHHHhc-----------------c-CCeEEEEEeeccCCcccCHHHHHHHHH----H
Confidence 46789999999999998765443332211 1 278999999999764333333444433 3
Q ss_pred cCCCccceEEEEEeEeecCCccccchh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
.+ ...++.+|++.+.|.+++++.+
T Consensus 117 ~~---~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 117 AG---AEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred cC---CCcEEEEecCCCCCHHHHHHHH
Confidence 33 2357889999999988887665
No 457
>PRK13695 putative NTPase; Provisional
Probab=97.75 E-value=3.9e-05 Score=73.54 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=72.0
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCc-eeeeeeeccccchhhhhccCCC-c--Cc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTT-LGIVRVEGVLPAQAKLFDTPGL-L--HP 381 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT-~~~i~~~~~l~~~~~llDtpGL-~--~~ 381 (601)
.++++|++|+|||||++.|++.... .|- ...+++.+... ...+ .+.... ..+....+...+. . ..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~-----~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 72 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGY-----KVGGFYTEEVREGGKRIGFKIIDL---DTGEEGILARVGFPSRPRV 72 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCC-----eEEEEEcHHHHhcCCccceEEEEc---CCCCeEEccccCCCCCCce
Confidence 3678999999999999999876543 231 12345544321 1111 221111 1111122232332 1 12
Q ss_pred CCccCCCCHHHHHHhcccccc--CCCEEEecc-----chHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecc
Q 007511 382 NQITTRLTREEQKLVNINKEL--KPRTYRIKA-----GHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMG 448 (601)
Q Consensus 382 ~~~~~~LSgGe~qrv~iaraL--~P~lllLD~-----~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~G 448 (601)
.+....+|++++-.+.+++.. +|+++++|. .....+...+...... +.+++.+. .+++++..+++|
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~-~~~~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDS-EKPVIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhC-CCeEEEEECchhhHHHHHHHhccCCc
Confidence 344556999998888776654 899999984 2233445556555543 55554322 245555555555
Q ss_pred ee
Q 007511 449 KT 450 (601)
Q Consensus 449 ki 450 (601)
++
T Consensus 152 ~i 153 (174)
T PRK13695 152 RV 153 (174)
T ss_pred EE
Confidence 54
No 458
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.73 E-value=4.8e-05 Score=75.16 Aligned_cols=96 Identities=15% Similarity=0.076 Sum_probs=56.8
Q ss_pred cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcccccccee-EeeecCCCCCceeeeeeeccccchhh
Q 007511 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-HLTEAPVPGTTLGIVRVEGVLPAQAK 371 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~-~v~qs~~pgtT~~~i~~~~~l~~~~~ 371 (601)
.+.+++ ++....|++++ +|+||+|||||++++.+..-. .++| +++.. .+..+ -...
T Consensus 17 ~v~~~~-~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l---------a~~G~~vpa~-~~~l~-----------~~d~ 74 (204)
T cd03282 17 FIPNDI-YLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM---------AQIGCFVPAE-YATLP-----------IFNR 74 (204)
T ss_pred EEEeee-EEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH---------HHcCCCcchh-hcCcc-----------Chhh
Confidence 455566 56666666555 999999999999999865411 0111 11111 01122 0122
Q ss_pred hhccCCCcC-cCCccCCCCHHHHHHhcccccc-CCCEEEecc
Q 007511 372 LFDTPGLLH-PNQITTRLTREEQKLVNINKEL-KPRTYRIKA 411 (601)
Q Consensus 372 llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL-~P~lllLD~ 411 (601)
++...+..+ ..+..+.+|.|++|+..+.... +|++++||+
T Consensus 75 I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE 116 (204)
T cd03282 75 LLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDE 116 (204)
T ss_pred eeEecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEecc
Confidence 333444433 4556778999998876655544 888888865
No 459
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.72 E-value=5.3e-05 Score=73.58 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=60.1
Q ss_pred EEEECCCCCchhHHHHHHh-ccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcC-cCCccC
Q 007511 309 VWAIGAQNAGKSTLLNAIA-KSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH-PNQITT 386 (601)
Q Consensus 309 v~ivG~nGaGKSTLLn~L~-g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~-~~~~~~ 386 (601)
+.+.|+||+|||||++++. ...-+..|. +++ ... ..+. ....++...+..+ .++..+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~---------~v~-----a~~---~~~~----~~d~il~~~~~~d~~~~~~s 60 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGS---------FVP-----AES---AELP----VFDRIFTRIGASDSLAQGLS 60 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCC---------Cee-----ehh---eEec----ccceEEEEeCCCCchhcccc
Confidence 4569999999999999997 322222231 221 111 1110 0123344455544 455678
Q ss_pred CCCHHHHHHhcccccc-CCCEEEe-------ccchHHHH-HHHHHHHHHhcCceEE
Q 007511 387 RLTREEQKLVNINKEL-KPRTYRI-------KAGHSIHI-AGLMRMDVEESSVESI 433 (601)
Q Consensus 387 ~LSgGe~qrv~iaraL-~P~lllL-------D~~~~~~l-~~lir~~~~~~g~tii 433 (601)
.+|+|++|...+.... +|+++++ |+.....+ ..+++....+.+.+++
T Consensus 61 ~fs~~~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~ii 116 (185)
T smart00534 61 TFMVEMKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTL 116 (185)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 8999999877777666 8999998 44444444 4555554432244443
No 460
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.69 E-value=5.1e-05 Score=82.17 Aligned_cols=104 Identities=24% Similarity=0.176 Sum_probs=0.0
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc--hhhhhccCCCcC-----
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA--QAKLFDTPGLLH----- 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~--~~~llDtpGL~~----- 380 (601)
+|.+||.+|||||||||+|++ ...-.++.|+||+..+........ ...++|+||+..
T Consensus 161 dValVG~PNaGKSTLln~Lt~----------------~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~ 224 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSA----------------AKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG 224 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhC----------------CcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch
Q ss_pred ---------------------------cCCccCCCCHHHHHHhcccccc--CCCEEEe---ccchHHHHHHHHHHHHHh
Q 007511 381 ---------------------------PNQITTRLTREEQKLVNINKEL--KPRTYRI---KAGHSIHIAGLMRMDVEE 427 (601)
Q Consensus 381 ---------------------------~~~~~~~LSgGe~qrv~iaraL--~P~lllL---D~~~~~~l~~lir~~~~~ 427 (601)
.......++...++....+..+ .|.++++ |......+...+..+...
T Consensus 225 ~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~ 303 (390)
T PRK12298 225 AGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA 303 (390)
T ss_pred hhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH
No 461
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.69 E-value=8.1e-05 Score=72.71 Aligned_cols=60 Identities=23% Similarity=0.262 Sum_probs=36.8
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcCc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLHP 381 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~~ 381 (601)
+|++||.+|||||||+|+|+|......+ ...++.|........... ....++||||+...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~--------------~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~ 62 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESK--------------LSASSVTKTCQKESAVWDGRRVNVIDTPGLFDT 62 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccc--------------cCCCCcccccceeeEEECCeEEEEEECcCCCCc
Confidence 4788999999999999999986432221 011334432222111112 23578999999864
No 462
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.69 E-value=2.7e-05 Score=77.92 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=55.3
Q ss_pred cccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcccccccee-EeeecCCCCCceeeeeeeccccchhh
Q 007511 294 SLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-HLTEAPVPGTTLGIVRVEGVLPAQAK 371 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~-~v~qs~~pgtT~~~i~~~~~l~~~~~ 371 (601)
.+.+++ ++....++++ +.|+||+|||||+++++-.. .-..+| +++... ..+. ....
T Consensus 18 ~v~~~~-~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------~la~~g~~vpa~~--------~~~~----~~~~ 75 (222)
T cd03285 18 FIPNDV-TLTRGKSRFLIITGPNMGGKSTYIRQIGVIV---------LMAQIGCFVPCDS--------ADIP----IVDC 75 (222)
T ss_pred eEEeeE-EEeecCCeEEEEECCCCCChHHHHHHHHHHH---------HHHHhCCCcCccc--------EEEe----ccce
Confidence 345555 5555455654 49999999999999987321 001112 222111 1111 1134
Q ss_pred hhccCCCcCcCCccCCCCHHHHHHhcccccc----CCCEEEeccc
Q 007511 372 LFDTPGLLHPNQITTRLTREEQKLVNINKEL----KPRTYRIKAG 412 (601)
Q Consensus 372 llDtpGL~~~~~~~~~LSgGe~qrv~iaraL----~P~lllLD~~ 412 (601)
+++..|+.+ .....+|.++++++.+++++ +|.+++||+-
T Consensus 76 il~~~~l~d--~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp 118 (222)
T cd03285 76 ILARVGASD--SQLKGVSTFMAEMLETAAILKSATENSLIIIDEL 118 (222)
T ss_pred eEeeecccc--chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 556666653 23567888888777776666 7889999654
No 463
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.66 E-value=3.4e-05 Score=67.98 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=41.8
Q ss_pred cccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccceeEeeecCCCCCceeee
Q 007511 294 SLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVSHLTEAPVPGTTLGIV 360 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~~v~qs~~pgtT~~~i 360 (601)
..++++ ++.+.+|+ ++++|+||+|||||++++. .|.+ ....+.+++++|.-+.++-++|+
T Consensus 3 ~aL~~v-sl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~lf~~ti~~Ni 75 (107)
T cd00820 3 TSLHGV-LVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPELGLEIRLRLNI 75 (107)
T ss_pred eEEEee-EEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechhcchhhHHhhc
Confidence 356666 67777776 5569999999999999987 2322 22344466777774455557776
Q ss_pred ee
Q 007511 361 RV 362 (601)
Q Consensus 361 ~~ 362 (601)
.+
T Consensus 76 ~~ 77 (107)
T cd00820 76 FL 77 (107)
T ss_pred ee
Confidence 65
No 464
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.00013 Score=81.99 Aligned_cols=106 Identities=21% Similarity=0.232 Sum_probs=67.2
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcCcCCccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLHPNQITT 386 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~~~~~~~ 386 (601)
.++++|.+|+|||||+|+|+|.. .....+||+|.|.-.-.....+ ..+++|.||+.....
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~----------------q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~--- 65 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGAN----------------QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTA--- 65 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccC----------------ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCC---
Confidence 47889999999999999999754 3456789999665433222222 357999999976432
Q ss_pred CCCHHHHHHhcccccc----CCCEEEe--ccchHHHHHHHHHHHHHhcCceEEEEEEe
Q 007511 387 RLTREEQKLVNINKEL----KPRTYRI--KAGHSIHIAGLMRMDVEESSVESIYVTVW 438 (601)
Q Consensus 387 ~LSgGe~qrv~iaraL----~P~lllL--D~~~~~~l~~lir~~~~~~g~tii~~~~~ 438 (601)
.|.+|+ +||.. +|++++- |..+-..=.-+--++.+ -|..++.+...
T Consensus 66 -~S~DE~----Var~~ll~~~~D~ivnVvDAtnLeRnLyltlQLlE-~g~p~ilaLNm 117 (653)
T COG0370 66 -YSEDEK----VARDFLLEGKPDLIVNVVDATNLERNLYLTLQLLE-LGIPMILALNM 117 (653)
T ss_pred -CCchHH----HHHHHHhcCCCCEEEEEcccchHHHHHHHHHHHHH-cCCCeEEEecc
Confidence 377774 34443 7787765 76665444434333333 34444443333
No 465
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.65 E-value=0.00025 Score=69.58 Aligned_cols=91 Identities=21% Similarity=0.206 Sum_probs=58.0
Q ss_pred HHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHH
Q 007511 189 KLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (601)
Q Consensus 189 ~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~ 268 (601)
.....+..+|.+++|||+.+........+.+++... | .+++++|+||+|+.......+.+.+.+++
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~----------~----~~~iIvviNK~D~~~~~~~~~~~~~~i~~ 146 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV----------G----VPYIVVFLNKADMVDDEELLELVEMEVRE 146 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc----------C----CCcEEEEEeCCCCCCcHHHHHHHHHHHHH
Confidence 344556679999999999987665555555554421 2 23478999999997432112234455666
Q ss_pred HHHHcCCC-ccceEEEEEeEeecCCc
Q 007511 269 RAREDGIS-KITKLHFVSAVKNWGLK 293 (601)
Q Consensus 269 ~~~~~g~~-~~~~V~lvSa~kg~G~~ 293 (601)
+++..|.. ....++++|+.++++..
T Consensus 147 ~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 147 LLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHhcccccCCeEEEeeCccccCCC
Confidence 66665531 12468899999988753
No 466
>PRK00089 era GTPase Era; Reviewed
Probab=97.62 E-value=0.00027 Score=73.51 Aligned_cols=99 Identities=20% Similarity=0.255 Sum_probs=64.1
Q ss_pred hhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH
Q 007511 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (601)
Q Consensus 182 ~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~ 261 (601)
+.+.+.+....++..+|+|++|+|+.+........+.+.+.. ...|+++|+||+|++.. ...
T Consensus 70 l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~---------------~~~pvilVlNKiDl~~~---~~~ 131 (292)
T PRK00089 70 LNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK---------------VKTPVILVLNKIDLVKD---KEE 131 (292)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh---------------cCCCEEEEEECCcCCCC---HHH
Confidence 444455566667788999999999998444333444444331 11389999999999842 133
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 262 l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+...+..+.+.. ++.+++.+|+.++.|...+++.+..
T Consensus 132 l~~~~~~l~~~~---~~~~i~~iSA~~~~gv~~L~~~L~~ 168 (292)
T PRK00089 132 LLPLLEELSELM---DFAEIVPISALKGDNVDELLDVIAK 168 (292)
T ss_pred HHHHHHHHHhhC---CCCeEEEecCCCCCCHHHHHHHHHH
Confidence 444444433322 2467889999988888877777643
No 467
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.61 E-value=0.00024 Score=70.50 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=29.1
Q ss_pred CCCHHHHHHhcccccc------CCCEEEe-------ccchHHHHHHHHHHHHH
Q 007511 387 RLTREEQKLVNINKEL------KPRTYRI-------KAGHSIHIAGLMRMDVE 426 (601)
Q Consensus 387 ~LSgGe~qrv~iaraL------~P~lllL-------D~~~~~~l~~lir~~~~ 426 (601)
.|||||+.+++||-.| ...+++| |..++..+..+++....
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~ 188 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK 188 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999988544 4567777 78888899999987653
No 468
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.57 E-value=0.00043 Score=67.77 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=24.3
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
+++++|.+|||||||+|+|+|...+..|
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~ 30 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEG 30 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 4788999999999999999997766555
No 469
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.57 E-value=0.00027 Score=82.75 Aligned_cols=115 Identities=20% Similarity=0.160 Sum_probs=65.4
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcCcCCccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLHPNQITT 386 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~~~~~~~ 386 (601)
.++++|.+|||||||+|.|+|... ..+++||+|.+.........+ ...++|+||+........
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~~----------------~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~ 68 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGARQ----------------RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISS 68 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccc
Confidence 578899999999999999987531 124558888665432222222 367999999976433223
Q ss_pred CCCHHHHHHhcccccc--CCCEEEe--ccchHHHHHHHHHHHHHhcCceEEEEEEeecC
Q 007511 387 RLTREEQKLVNINKEL--KPRTYRI--KAGHSIHIAGLMRMDVEESSVESIYVTVWASP 441 (601)
Q Consensus 387 ~LSgGe~qrv~iaraL--~P~lllL--D~~~~~~l~~lir~~~~~~g~tii~~~~~ad~ 441 (601)
..|.+|+ ++-...+ +++++++ |..+...-..+..+.. +.+..++.+...+|.
T Consensus 69 ~~s~~E~--i~~~~l~~~~aD~vI~VvDat~ler~l~l~~ql~-e~giPvIvVlNK~Dl 124 (772)
T PRK09554 69 QTSLDEQ--IACHYILSGDADLLINVVDASNLERNLYLTLQLL-ELGIPCIVALNMLDI 124 (772)
T ss_pred cccHHHH--HHHHHHhccCCCEEEEEecCCcchhhHHHHHHHH-HcCCCEEEEEEchhh
Confidence 3455554 2111111 6676654 6554333333333332 335555555555553
No 470
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00013 Score=65.36 Aligned_cols=124 Identities=26% Similarity=0.352 Sum_probs=82.7
Q ss_pred Cceeccc-cccccccCcccccccccC----CCCchhhHH-HHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhh
Q 007511 152 KPVVCAR-CHALRHYGKVKDVTVENL----LPDFDFDHT-VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTA 225 (601)
Q Consensus 152 ~~~~C~R-C~~l~hy~~~~~~~~~~~----lP~~~~~~~-~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~ 225 (601)
+..+|+- --...+|.+.+.++..+- -|.+.|.+. ....+.-.+.++|++++|-.+.|....|++.+..+..
T Consensus 14 KTtL~q~L~G~~~lykKTQAve~~d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~--- 90 (148)
T COG4917 14 KTTLFQSLYGNDTLYKKTQAVEFNDKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGV--- 90 (148)
T ss_pred chhHHHHhhcchhhhcccceeeccCccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcccccccc---
Confidence 3444444 223345655544332110 256666644 3445556677899999999999999888888766432
Q ss_pred hhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 226 EENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 226 ~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+ ++|-|+||+||... .+....+.|++ +.| ..+|+.+|+....|+++|++.+.+
T Consensus 91 --------------k-~vIgvVTK~DLaed-~dI~~~~~~L~----eaG---a~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 91 --------------K-KVIGVVTKADLAED-ADISLVKRWLR----EAG---AEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred --------------c-ceEEEEecccccch-HhHHHHHHHHH----HcC---CcceEEEeccCcccHHHHHHHHHh
Confidence 2 59999999999842 23456667754 445 368999999999999998887744
No 471
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.50 E-value=8.3e-05 Score=75.73 Aligned_cols=58 Identities=29% Similarity=0.500 Sum_probs=36.7
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~ 380 (601)
.|+++|.+|||||||+|+|+|..... .+..+++|.....+..... ....++||||+..
T Consensus 33 ~IllvG~tGvGKSSliNaLlg~~~~~---------------v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 33 TILVLGKTGVGKSSTINSIFGERKAA---------------TSAFQSETLRVREVSGTVDGFKLNIIDTPGLLE 91 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcc---------------cCCCCCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 68889999999999999999864221 1223333332222221111 2357899999975
No 472
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.50 E-value=0.00052 Score=65.43 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=60.4
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
..+..+|.+++|+|+.+........+...+.. . + .|+++|+||+|+.... .......++++.++
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~----------~----~-~~i~iv~nK~D~~~~~-~~~~~~~~~~~~~~ 144 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIARE----------G----G-LPIIVAINKIDRVGEE-DLEEVLREIKELLG 144 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH----------C----C-CCeEEEEECCCCcchh-cHHHHHHHHHHHHc
Confidence 33456899999999988654333333222221 1 2 3899999999998632 22344555555554
Q ss_pred HcCC----------CccceEEEEEeEeecCCccccchhhh
Q 007511 272 EDGI----------SKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 272 ~~g~----------~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..+. ....+++.+|+.+++|...+++.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 145 LIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred cccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 4331 12467889999999999988877743
No 473
>PRK00089 era GTPase Era; Reviewed
Probab=97.49 E-value=8.7e-05 Score=77.17 Aligned_cols=60 Identities=38% Similarity=0.402 Sum_probs=39.5
Q ss_pred CCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcC
Q 007511 306 RGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (601)
Q Consensus 306 ~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~ 380 (601)
.|.|+++|.+|||||||+|.|+|.. ....++.|+||...+....... ....++||||+..
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~---------------~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQK---------------ISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHK 65 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCc---------------eeecCCCCCcccccEEEEEEcCCceEEEEECCCCCC
Confidence 3578889999999999999999742 1223455677755433211111 2356789999865
No 474
>PRK15494 era GTPase Era; Provisional
Probab=97.47 E-value=0.00039 Score=74.10 Aligned_cols=98 Identities=14% Similarity=0.244 Sum_probs=61.6
Q ss_pred hhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH
Q 007511 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (601)
Q Consensus 182 ~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~ 261 (601)
+...|.+....++..+|+|++|+|+.+........+.+.+... +. ++++|+||+|+... ....
T Consensus 117 l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~--------------~~-p~IlViNKiDl~~~--~~~~ 179 (339)
T PRK15494 117 LEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL--------------NI-VPIFLLNKIDIESK--YLND 179 (339)
T ss_pred HHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc--------------CC-CEEEEEEhhcCccc--cHHH
Confidence 4445556666667889999999999875544333343333210 12 67889999998643 1223
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhh
Q 007511 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 262 l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
+.+++ ...+ ....++.+||.++.|...+++.+...
T Consensus 180 ~~~~l----~~~~--~~~~i~~iSAktg~gv~eL~~~L~~~ 214 (339)
T PRK15494 180 IKAFL----TENH--PDSLLFPISALSGKNIDGLLEYITSK 214 (339)
T ss_pred HHHHH----HhcC--CCcEEEEEeccCccCHHHHHHHHHHh
Confidence 33332 2222 23568899999999988888777443
No 475
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.47 E-value=0.00018 Score=70.78 Aligned_cols=33 Identities=33% Similarity=0.561 Sum_probs=24.0
Q ss_pred ccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccc
Q 007511 295 LIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 295 LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+.+++ ++ ..|++ .++|+||+|||||+++|+|..
T Consensus 16 v~n~i-~l--~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 16 VANDI-DM--EKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ecceE-EE--cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 44444 33 33454 559999999999999998765
No 476
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.46 E-value=0.00041 Score=63.93 Aligned_cols=88 Identities=23% Similarity=0.260 Sum_probs=58.8
Q ss_pred HHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHH
Q 007511 186 VGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW 265 (601)
Q Consensus 186 ~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w 265 (601)
+.+........+|++++|+|+.+........+.+++... + .|+++|+||+|+.... ..
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--------------~-~piiiv~nK~D~~~~~----~~--- 123 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKS--------------K-KPVILVVNKVDNIKEE----DE--- 123 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhc--------------C-CCEEEEEECcccCChH----HH---
Confidence 333334445679999999999886655555555555421 1 3899999999998642 11
Q ss_pred HHHHHHHcCCCccceEEEEEeEeecCCccccchh
Q 007511 266 VRQRAREDGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 266 ~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
...+...+ ...++.+|+..+.|...+++.+
T Consensus 124 -~~~~~~~~---~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 124 -AAEFYSLG---FGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred -HHHHHhcC---CCCeEEEecccCCCHHHHHHHH
Confidence 11122233 3467899999999998888776
No 477
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.43 E-value=0.00057 Score=63.55 Aligned_cols=92 Identities=23% Similarity=0.211 Sum_probs=53.3
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
..+..+|++++|+|+.+...........++.. . +.+|+++|+||+|+.... ........+.+.++
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~----------~----~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~ 134 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILEL----------L----GIKRGLVVLTKADLVDED-WLELVEEEIRELLA 134 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHH----------h----CCCcEEEEEECccccCHH-HHHHHHHHHHHHHH
Confidence 44567999999999987432211121122111 0 113799999999997531 11122222333333
Q ss_pred HcCCCccceEEEEEeEeecCCccccchh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
..+. ....++.+|+..+.|.+++++.+
T Consensus 135 ~~~~-~~~~~~~~Sa~~~~~v~~l~~~l 161 (164)
T cd04171 135 GTFL-ADAPIFPVSAVTGEGIEELKEYL 161 (164)
T ss_pred hcCc-CCCcEEEEeCCCCcCHHHHHHHH
Confidence 3211 12468899999999998888766
No 478
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=97.42 E-value=0.00021 Score=83.67 Aligned_cols=104 Identities=9% Similarity=0.115 Sum_probs=62.6
Q ss_pred cEEEECCCCCchhHHHHHHhcc-ccCCCCCccccccceeEeeecCCCCCc-eeeeeeeccccchhhhhccCCCcC-cCCc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS-VDAGRGGDGEEKNIVSHLTEAPVPGTT-LGIVRVEGVLPAQAKLFDTPGLLH-PNQI 384 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~-~~~~~G~i~~~~~~i~~v~qs~~pgtT-~~~i~~~~~l~~~~~llDtpGL~~-~~~~ 384 (601)
.+.+.||||+||||||++|++. +-+..| .+++......+. .+. ++...|... ..+.
T Consensus 324 ~liItGpNg~GKSTlLK~i~~~~l~aq~G---------~~Vpa~~~~~~~~~d~------------i~~~i~~~~si~~~ 382 (771)
T TIGR01069 324 VLAITGPNTGGKTVTLKTLGLLALMFQSG---------IPIPANEHSEIPYFEE------------IFADIGDEQSIEQN 382 (771)
T ss_pred EEEEECCCCCCchHHHHHHHHHHHHHHhC---------CCccCCccccccchhh------------eeeecChHhHHhhh
Confidence 4555999999999999999987 333333 133322210000 111 111111111 2334
Q ss_pred cCCCCHHHHHHhcccccc-CCCEEEe-------ccchHHHH-HHHHHHHHHhcCceEE
Q 007511 385 TTRLTREEQKLVNINKEL-KPRTYRI-------KAGHSIHI-AGLMRMDVEESSVESI 433 (601)
Q Consensus 385 ~~~LSgGe~qrv~iaraL-~P~lllL-------D~~~~~~l-~~lir~~~~~~g~tii 433 (601)
.+.+|+|+++++.+.+.+ .|.++++ |+.....+ ..++..+... +.+++
T Consensus 383 LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~-g~~vi 439 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQ-NAQVL 439 (771)
T ss_pred hhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEE
Confidence 678999999999998888 7888888 66666666 4566665544 55554
No 479
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00092 Score=68.87 Aligned_cols=63 Identities=6% Similarity=0.049 Sum_probs=41.7
Q ss_pred ccCCCCHHHHHHhcccccc-----------CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEE------EEEEee
Q 007511 384 ITTRLTREEQKLVNINKEL-----------KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESI------YVTVWA 439 (601)
Q Consensus 384 ~~~~LSgGe~qrv~iaraL-----------~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii------~~~~~a 439 (601)
..+.+|+||+|++.++++| +|+++++ |+.....+...++.. +.+++ .+..+|
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----VQTFVTTTDLADFDALW 255 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----CCEEEEeCCchhccchh
Confidence 3566899999999999873 8899998 566666666666532 22233 222344
Q ss_pred ---cCEEEeeccee
Q 007511 440 ---SPYLPLHMGKT 450 (601)
Q Consensus 440 ---d~vl~l~~Gki 450 (601)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 56677777764
No 480
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.35 E-value=0.0003 Score=83.75 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=67.2
Q ss_pred hhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CC--CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 370 AKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KP--RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 370 ~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P--~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
.++++.+||.. .++.+..|||||+|||.||++| +| .+|+| |+.....+..+++.+... |.|++.++
T Consensus 470 l~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~-G~TVIvVe 548 (943)
T PRK00349 470 LKFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDL-GNTLIVVE 548 (943)
T ss_pred HHHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEe
Confidence 35788899974 6899999999999999999999 55 88988 788999999999988765 67777332
Q ss_pred ------EeecCEEEe------ecceec
Q 007511 437 ------VWASPYLPL------HMGKTE 451 (601)
Q Consensus 437 ------~~ad~vl~l------~~Gki~ 451 (601)
..||++++| +.|++.
T Consensus 549 H~~~~i~~aD~vi~LgpgaG~~~G~iv 575 (943)
T PRK00349 549 HDEDTIRAADYIVDIGPGAGVHGGEVV 575 (943)
T ss_pred CCHHHHHhCCEEEEeccccCCCCCEEe
Confidence 358999999 888873
No 481
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.34 E-value=0.0013 Score=61.42 Aligned_cols=90 Identities=24% Similarity=0.373 Sum_probs=55.9
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
....+|++++|+|+.+........+.+.+.. . + .|+++|+||+|+.... ......+.....+.
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~----------~----~-~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~ 143 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILE----------E----G-KALVIVVNKWDLVEKD--SKTMKEFKKEIRRK 143 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHh----------c----C-CCEEEEEeccccCCcc--HHHHHHHHHHHHhh
Confidence 3456899999999998765433333333221 1 1 3899999999998652 12233333333222
Q ss_pred cCCCccceEEEEEeEeecCCccccchh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
.+......++.+|+..+.|...+++.+
T Consensus 144 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l 170 (174)
T cd01895 144 LPFLDYAPIVFISALTGQGVDKLFDAI 170 (174)
T ss_pred cccccCCceEEEeccCCCCHHHHHHHH
Confidence 222123468899999999988887766
No 482
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.31 E-value=0.00037 Score=82.86 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=66.5
Q ss_pred hhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CC--CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 370 AKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KP--RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 370 ~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P--~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
.++++.+||.. .++.+.+|||||+|||.||++| +| .+|+| |+.....+..+++.+..+ |.+++.++
T Consensus 468 l~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~-G~TVIvVe 546 (924)
T TIGR00630 468 LGFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL-GNTVIVVE 546 (924)
T ss_pred HHhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEE
Confidence 35577788874 5889999999999999999999 54 78888 788899999999988766 67777332
Q ss_pred ------EeecCEEEe------ecceec
Q 007511 437 ------VWASPYLPL------HMGKTE 451 (601)
Q Consensus 437 ------~~ad~vl~l------~~Gki~ 451 (601)
.+||+++.| ++|++.
T Consensus 547 Hd~~~i~~aD~vi~LgpgaG~~~G~Iv 573 (924)
T TIGR00630 547 HDEETIRAADYVIDIGPGAGIHGGEVV 573 (924)
T ss_pred CCHHHHhhCCEEEEecccccCCCCEEe
Confidence 379999999 888874
No 483
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.31 E-value=0.00024 Score=65.37 Aligned_cols=58 Identities=31% Similarity=0.430 Sum_probs=37.8
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~ 380 (601)
.++++|++|+|||||+|.|.+.. .......|++|.+.........+ ...++|+||+..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 61 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRD---------------RAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRE 61 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc---------------eEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCC
Confidence 57889999999999999998643 12223346666544332222222 356899999865
No 484
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.30 E-value=0.00015 Score=77.18 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=78.6
Q ss_pred CCcEEE-ECCCCCchhHHHHHHhccccCCCCCc---cccccceeEeeecCC-CCCc---eeeeeeec-------------
Q 007511 306 RGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD---GEEKNIVSHLTEAPV-PGTT---LGIVRVEG------------- 364 (601)
Q Consensus 306 ~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i---~~~~~~i~~v~qs~~-pgtT---~~~i~~~~------------- 364 (601)
.|++.. ||.||.||||-+++++|..+|.-|.. ..+...+++..-+.. .+.| .+++....
T Consensus 99 pg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~k 178 (592)
T KOG0063|consen 99 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAVK 178 (592)
T ss_pred cchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHHH
Confidence 466655 99999999999999999999988842 111112222211111 1111 12211100
Q ss_pred -----------cccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHH
Q 007511 365 -----------VLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRM 423 (601)
Q Consensus 365 -----------~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~ 423 (601)
......++++...|.. .++-...|||||.||.++|.+. +.+++++ |..+++.....+|.
T Consensus 179 ~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRs 258 (592)
T KOG0063|consen 179 GTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRS 258 (592)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHH
Confidence 0001245666666665 6677899999999999999887 8899987 67777777788887
Q ss_pred HHHh
Q 007511 424 DVEE 427 (601)
Q Consensus 424 ~~~~ 427 (601)
+...
T Consensus 259 l~~p 262 (592)
T KOG0063|consen 259 LINP 262 (592)
T ss_pred hhCC
Confidence 7654
No 485
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.30 E-value=0.00061 Score=68.69 Aligned_cols=57 Identities=32% Similarity=0.352 Sum_probs=35.7
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~ 380 (601)
+++++|.+|||||||+|+|+|.... ...+|++|.+...-..... ....++|+||+..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~----------------v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~ 59 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE----------------VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIE 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc----------------ccCCCCccccceEEEEEECCeEEEEEECCCccc
Confidence 5788999999999999999975411 1223555533322111111 1246789999865
No 486
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.29 E-value=0.00055 Score=67.97 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.3
Q ss_pred cEEEECCCCCchhHHHHHHhccccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
+|+++|.+||||||++|+|+|....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f 26 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVF 26 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-S
T ss_pred EEEEECCCCCCHHHHHHHHhcccce
Confidence 4788999999999999999987643
No 487
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.28 E-value=0.00052 Score=75.67 Aligned_cols=58 Identities=34% Similarity=0.436 Sum_probs=41.2
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~ 380 (601)
+++++|.+|||||||+|.|++... ...+..|+||.+.+.....+.+ ...++||+|+..
T Consensus 205 kVvIvG~~nvGKSSLiN~L~~~~~---------------aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 205 KLAIVGSPNVGKSSLLNALLKQDR---------------AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE 263 (442)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC---------------cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence 688899999999999999997431 1234558888776544333322 247899999864
No 488
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.25 E-value=0.0018 Score=59.74 Aligned_cols=87 Identities=23% Similarity=0.325 Sum_probs=59.4
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
......|.+++|+|+.+........+.+.+... + .|+++|+||+|+... ...+.++......
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~--------------~-~~~iiv~nK~Dl~~~---~~~~~~~~~~~~~ 139 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS--------------K-TPVILVLNKIDLVKD---KEDLLPLLEKLKE 139 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh--------------C-CCEEEEEEchhcccc---HHHHHHHHHHHHh
Confidence 345678999999999987554444554544321 1 279999999999842 2345555555443
Q ss_pred HcCCCccceEEEEEeEeecCCccccchh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
..+ ...++.+|+..+.|...+++.+
T Consensus 140 ~~~---~~~~~~~s~~~~~~~~~l~~~l 164 (168)
T cd04163 140 LGP---FAEIFPISALKGENVDELLEEI 164 (168)
T ss_pred ccC---CCceEEEEeccCCChHHHHHHH
Confidence 322 3578889999999988887776
No 489
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.24 E-value=0.0013 Score=64.77 Aligned_cols=97 Identities=12% Similarity=0.178 Sum_probs=54.6
Q ss_pred HHhhhccCCcEEEEEEeCCCC-CCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHH
Q 007511 189 KLMSASGARSVVLMVVDAADF-DGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (601)
Q Consensus 189 ~l~~~~~~~dvVv~VVDa~Df-~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~ 267 (601)
.....+..+|.+++|+|+.+. +..........+.. . +.+++++|+||+|+..+. ......+.++
T Consensus 99 ~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~----------~----~~~~iiivvNK~Dl~~~~-~~~~~~~~i~ 163 (203)
T cd01888 99 TMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI----------M----GLKHIIIVQNKIDLVKEE-QALENYEQIK 163 (203)
T ss_pred HHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH----------c----CCCcEEEEEEchhccCHH-HHHHHHHHHH
Confidence 334445568999999999974 22222222222211 1 123689999999997531 1111112222
Q ss_pred HHHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 268 ~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..+..... ....++.+|+..+.|...+++.+..
T Consensus 164 ~~~~~~~~-~~~~i~~vSA~~g~gi~~L~~~l~~ 196 (203)
T cd01888 164 KFVKGTIA-ENAPIIPISAQLKYNIDVLLEYIVK 196 (203)
T ss_pred HHHhcccc-CCCcEEEEeCCCCCCHHHHHHHHHH
Confidence 22222111 1235888999999999888887743
No 490
>PTZ00258 GTP-binding protein; Provisional
Probab=97.23 E-value=0.00024 Score=76.62 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.2
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.+.+||.+|||||||||+|++.
T Consensus 23 kvgIVG~PNvGKSTLfnaLt~~ 44 (390)
T PTZ00258 23 KMGIVGLPNVGKSTTFNALCKQ 44 (390)
T ss_pred EEEEECCCCCChHHHHHHHhcC
Confidence 6888999999999999999864
No 491
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.22 E-value=0.00017 Score=74.43 Aligned_cols=22 Identities=45% Similarity=0.631 Sum_probs=19.6
Q ss_pred EEEECCCCCchhHHHHHHhccc
Q 007511 309 VWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 309 v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+++||.+|||||||+|+|++..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~ 22 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG 22 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC
Confidence 4679999999999999999854
No 492
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.21 E-value=0.0012 Score=72.49 Aligned_cols=93 Identities=25% Similarity=0.372 Sum_probs=59.7
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
..+..+|++++|+|+.+.....+..+.+.+.. .+ .|+++|+||+||+.. ......+......
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~----------~~-----~~iiiv~NK~Dl~~~---~~~~~~~~~~~~~ 311 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRIAGLILE----------AG-----KALVIVVNKWDLVKD---EKTREEFKKELRR 311 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----------cC-----CcEEEEEECcccCCC---HHHHHHHHHHHHH
Confidence 45567999999999998755444444443321 12 379999999999821 2233333333222
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
.........++.+||..++|...+++.+...
T Consensus 312 ~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 312 KLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred hcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 2222223578899999999999998887443
No 493
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.19 E-value=0.0004 Score=64.40 Aligned_cols=55 Identities=29% Similarity=0.394 Sum_probs=0.0
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGL 378 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL 378 (601)
+|+++|.+|||||||+|.|++.. .....++.++.|.....+ .......++|+||+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~--------------~~~~~~~~~~~t~~~~~~--~~~~~~~~~D~~g~ 55 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRK--------------KLARTSKTPGKTQLINFF--NVNDKFRLVDLPGY 55 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--------------ceeeecCCCCcceeEEEE--EccCeEEEecCCCc
No 494
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.19 E-value=0.0027 Score=62.73 Aligned_cols=91 Identities=20% Similarity=0.127 Sum_probs=54.2
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCC-hhHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS-PTRFEHWVRQRA 270 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~-~~~l~~w~~~~~ 270 (601)
..+..+|++++|+|+.+........+..++.. . +.+++++|+||+|+...... ...+..-++.++
T Consensus 96 ~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~----------~----~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~ 161 (208)
T cd04166 96 TGASTADLAILLVDARKGVLEQTRRHSYILSL----------L----GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFA 161 (208)
T ss_pred HhhhhCCEEEEEEECCCCccHhHHHHHHHHHH----------c----CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHH
Confidence 34567999999999998654433333333321 1 12357889999999753210 112223333444
Q ss_pred HHcCCCccceEEEEEeEeecCCccccc
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLID 297 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~ 297 (601)
+..+. ....++.+|+.++.|..+...
T Consensus 162 ~~~~~-~~~~ii~iSA~~g~ni~~~~~ 187 (208)
T cd04166 162 AKLGI-EDITFIPISALDGDNVVSRSE 187 (208)
T ss_pred HHcCC-CCceEEEEeCCCCCCCccCCC
Confidence 45553 123588999999998875543
No 495
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.18 E-value=0.001 Score=61.52 Aligned_cols=111 Identities=16% Similarity=0.128 Sum_probs=0.0
Q ss_pred EECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccch-hhhhccCCCcCcCCccCCCC
Q 007511 311 AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQ-AKLFDTPGLLHPNQITTRLT 389 (601)
Q Consensus 311 ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~-~~llDtpGL~~~~~~~~~LS 389 (601)
++|.+|+|||||+|.++| .....+..|++|.+.......+.+. ..++||||+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~----------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG----------------ARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS--ED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHhc----------------CcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCC--hh
Q ss_pred HHHHHHhccccccCCCEEEeccchHHHHHHHHHHHHHhcCceEEEEEEeec
Q 007511 390 REEQKLVNINKELKPRTYRIKAGHSIHIAGLMRMDVEESSVESIYVTVWAS 440 (601)
Q Consensus 390 gGe~qrv~iaraL~P~lllLD~~~~~~l~~lir~~~~~~g~tii~~~~~ad 440 (601)
.+...........+--++++|..........+...... +..++.+..-+|
T Consensus 63 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-~~~~iiv~NK~D 112 (158)
T cd01879 63 EKVARDFLLGEKPDLIVNVVDATNLERNLYLTLQLLEL-GLPVVVALNMID 112 (158)
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCcchhHHHHHHHHHHc-CCCEEEEEehhh
No 496
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.16 E-value=0.00029 Score=66.22 Aligned_cols=55 Identities=40% Similarity=0.409 Sum_probs=0.0
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCc-eeeeeeeccccc-hhhhhccCCC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT-LGIVRVEGVLPA-QAKLFDTPGL 378 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT-~~~i~~~~~l~~-~~~llDtpGL 378 (601)
+|++||.+|||||||+|+|.+ .....+..|++| ...+.....-.. ...++||||+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~----------------~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 58 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN----------------AKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGL 58 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhc----------------CCccccCCCccccCCcceEEEcCCCCeEEEEecCcc
No 497
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.16 E-value=0.0012 Score=66.07 Aligned_cols=45 Identities=29% Similarity=0.277 Sum_probs=34.0
Q ss_pred CCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC
Q 007511 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (601)
Q Consensus 196 ~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~ 255 (601)
..|++++|||+.......+..+..++... + .|+++|+||+|++++
T Consensus 109 ~~D~~llVvda~~g~~~~d~~~l~~l~~~----------~-----ip~ivvvNK~D~~~~ 153 (224)
T cd04165 109 APDYAMLVVAANAGIIGMTKEHLGLALAL----------N-----IPVFVVVTKIDLAPA 153 (224)
T ss_pred CCCEEEEEEECCCCCcHHHHHHHHHHHHc----------C-----CCEEEEEECccccCH
Confidence 58999999999987766666666655431 2 279999999999854
No 498
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.15 E-value=0.00036 Score=72.79 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=21.4
Q ss_pred CcEEEECCCCCchhHHHHHHhccc
Q 007511 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 307 G~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
-.|+++|.+|+|||||+|+|+|..
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368889999999999999999864
No 499
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.14 E-value=0.00036 Score=72.07 Aligned_cols=86 Identities=24% Similarity=0.270 Sum_probs=49.7
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcCcCCccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLHPNQITT 386 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~~~~~~~ 386 (601)
.+++||.+++|||||||.|++... .. ..+|.||+..+.-.+.+.+ ..+++|.|||.....
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~s-ev---------------a~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas--- 125 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKS-EV---------------ADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGAS--- 125 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCc-cc---------------cccCceecccccceEeecCceEEEEcCcccccCcc---
Confidence 688899999999999999997541 11 1224455444332222222 367999999976210
Q ss_pred CCCHH-HHHHhccccccCCCEEEeccch
Q 007511 387 RLTRE-EQKLVNINKELKPRTYRIKAGH 413 (601)
Q Consensus 387 ~LSgG-e~qrv~iaraL~P~lllLD~~~ 413 (601)
.+.| =+|-++.+|.-+--++++|...
T Consensus 126 -~g~grG~~vlsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 126 -SGRGRGRQVLSVARNADLIIIVLDVFE 152 (365)
T ss_pred -cCCCCcceeeeeeccCCEEEEEEecCC
Confidence 0111 2566666555444445555443
No 500
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.13 E-value=0.00047 Score=63.66 Aligned_cols=23 Identities=52% Similarity=0.667 Sum_probs=20.6
Q ss_pred CcEEEECCCCCchhHHHHHHhcc
Q 007511 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 307 G~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+.++++|++|||||||+|.|+|.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46788999999999999999975
Done!